RAM_35670 3d0be3038493a3053d0db96a8d7ecd32 172 SUPERFAMILY SSF50475 36 164 6.55E-22 T 13-10-2018 RAM_35670 3d0be3038493a3053d0db96a8d7ecd32 172 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 36 107 7.9E-13 T 13-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RAM_35670 3d0be3038493a3053d0db96a8d7ecd32 172 Gene3D G3DSA:2.30.110.10 21 165 7.9E-23 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_13085 f4177a00e56198f7640613573469ace9 205 SUPERFAMILY SSF109604 17 185 1.49E-24 T 13-10-2018 RAM_13085 f4177a00e56198f7640613573469ace9 205 Gene3D G3DSA:1.10.3210.10 15 157 3.8E-10 T 13-10-2018 RAM_13085 f4177a00e56198f7640613573469ace9 205 PIRSF PIRSF035170 13 199 8.1E-42 T 13-10-2018 IPR009218 Predicted HD phosphohydrolase RAM_22005 40a0c906656cf4224aa13d6d1fb0d7ea 594 Pfam PF01590 GAF domain 71 201 2.3E-5 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_22005 40a0c906656cf4224aa13d6d1fb0d7ea 594 Gene3D G3DSA:3.40.50.300 326 465 8.7E-6 T 13-10-2018 RAM_22005 40a0c906656cf4224aa13d6d1fb0d7ea 594 Gene3D G3DSA:1.10.10.60 546 589 1.3E-16 T 13-10-2018 RAM_22005 40a0c906656cf4224aa13d6d1fb0d7ea 594 SUPERFAMILY SSF46689 546 589 1.88E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_22005 40a0c906656cf4224aa13d6d1fb0d7ea 594 Pfam PF02954 Bacterial regulatory protein, Fis family 548 587 3.8E-13 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RAM_22005 40a0c906656cf4224aa13d6d1fb0d7ea 594 Gene3D G3DSA:3.30.450.40 23 204 2.4E-40 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_22005 40a0c906656cf4224aa13d6d1fb0d7ea 594 SUPERFAMILY SSF52540 326 533 3.45E-14 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_22005 40a0c906656cf4224aa13d6d1fb0d7ea 594 Gene3D G3DSA:1.10.8.60 466 540 4.5E-8 T 13-10-2018 RAM_22005 40a0c906656cf4224aa13d6d1fb0d7ea 594 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 553 570 2.0E-10 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RAM_22005 40a0c906656cf4224aa13d6d1fb0d7ea 594 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 570 590 2.0E-10 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RAM_44565 bbabadb6946ef8608df20556db8c8603 435 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 1 431 4.3E-121 T 13-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 RAM_44565 bbabadb6946ef8608df20556db8c8603 435 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 35 44 1.0E-22 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RAM_44565 bbabadb6946ef8608df20556db8c8603 435 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 193 214 1.0E-22 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RAM_44565 bbabadb6946ef8608df20556db8c8603 435 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 162 180 1.0E-22 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RAM_44565 bbabadb6946ef8608df20556db8c8603 435 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 1 433 31.267 T 13-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 RAM_44565 bbabadb6946ef8608df20556db8c8603 435 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 1 283 1.3E-112 T 13-10-2018 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 RAM_44565 bbabadb6946ef8608df20556db8c8603 435 SMART SM00840 310 371 1.3E-11 T 13-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 RAM_44565 bbabadb6946ef8608df20556db8c8603 435 Gene3D G3DSA:1.20.120.640 276 433 1.1E-34 T 13-10-2018 RAM_44565 bbabadb6946ef8608df20556db8c8603 435 Gene3D G3DSA:3.40.50.620 1 275 1.8E-109 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAM_44565 bbabadb6946ef8608df20556db8c8603 435 Pfam PF09190 DALR domain 310 363 3.3E-10 T 13-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 RAM_44565 bbabadb6946ef8608df20556db8c8603 435 SUPERFAMILY SSF47323 297 432 4.84E-31 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 RAM_44565 bbabadb6946ef8608df20556db8c8603 435 SUPERFAMILY SSF52374 1 281 6.17E-82 T 13-10-2018 RAM_42955 813392c4373ffbbeceefb2ebf206296c 131 SUPERFAMILY SSF55298 2 129 3.93E-29 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 RAM_42955 813392c4373ffbbeceefb2ebf206296c 131 Gene3D G3DSA:3.30.1330.40 1 130 4.8E-31 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 RAM_42955 813392c4373ffbbeceefb2ebf206296c 131 Pfam PF01042 Endoribonuclease L-PSP 14 127 1.7E-19 T 13-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 RAM_19540 45b40d1a75479d2eb155a704fcb9ec08 390 Gene3D G3DSA:3.40.47.10 1 389 1.1E-127 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_19540 45b40d1a75479d2eb155a704fcb9ec08 390 PIRSF PIRSF000429 1 390 5.9E-112 T 13-10-2018 IPR002155 Thiolase GO:0016747 RAM_19540 45b40d1a75479d2eb155a704fcb9ec08 390 SUPERFAMILY SSF53901 267 388 5.6E-41 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_19540 45b40d1a75479d2eb155a704fcb9ec08 390 ProSitePatterns PS00737 Thiolases signature 2. 335 351 - T 13-10-2018 IPR020613 Thiolase, conserved site GO:0016747 RAM_19540 45b40d1a75479d2eb155a704fcb9ec08 390 Pfam PF02803 Thiolase, C-terminal domain 267 388 3.8E-39 T 13-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 RAM_19540 45b40d1a75479d2eb155a704fcb9ec08 390 Pfam PF00108 Thiolase, N-terminal domain 2 259 3.1E-56 T 13-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 RAM_19540 45b40d1a75479d2eb155a704fcb9ec08 390 SUPERFAMILY SSF53901 2 266 1.08E-59 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_19540 45b40d1a75479d2eb155a704fcb9ec08 390 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 4 387 4.0E-117 T 13-10-2018 IPR002155 Thiolase GO:0016747 RAM_19540 45b40d1a75479d2eb155a704fcb9ec08 390 ProSitePatterns PS00099 Thiolases active site. 370 383 - T 13-10-2018 IPR020610 Thiolase, active site GO:0016747 RAM_10230 828cdff832934dcfaa496e9a6bfdc683 74 Pfam PF01381 Helix-turn-helix 21 66 7.6E-15 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_10230 828cdff832934dcfaa496e9a6bfdc683 74 SMART SM00530 10 66 2.4E-13 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_10230 828cdff832934dcfaa496e9a6bfdc683 74 Gene3D G3DSA:1.10.260.40 7 72 9.5E-28 T 13-10-2018 RAM_10230 828cdff832934dcfaa496e9a6bfdc683 74 SUPERFAMILY SSF47413 7 72 1.35E-17 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_21050 6cca08d1666af8d264bd4cbe8f08b465 254 SUPERFAMILY SSF52091 10 117 4.51E-7 T 13-10-2018 IPR036513 STAS domain superfamily RAM_21050 6cca08d1666af8d264bd4cbe8f08b465 254 SUPERFAMILY SSF55874 150 241 5.42E-5 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_21050 6cca08d1666af8d264bd4cbe8f08b465 254 Gene3D G3DSA:3.30.750.24 2 119 2.9E-11 T 13-10-2018 IPR036513 STAS domain superfamily RAM_21050 6cca08d1666af8d264bd4cbe8f08b465 254 Gene3D G3DSA:3.30.565.10 123 248 1.7E-15 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_14390 3928238d6eeb777f72b6be83784f8ead 256 SMART SM00382 32 225 3.2E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_14390 3928238d6eeb777f72b6be83784f8ead 256 SUPERFAMILY SSF52540 4 233 1.18E-40 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_14390 3928238d6eeb777f72b6be83784f8ead 256 Pfam PF00005 ABC transporter 23 174 1.7E-22 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_14390 3928238d6eeb777f72b6be83784f8ead 256 TIGRFAM TIGR01978 sufC: FeS assembly ATPase SufC 4 246 8.1E-105 T 13-10-2018 IPR010230 FeS cluster assembly SUF system, ATPase SufC GO:0005524 RAM_14390 3928238d6eeb777f72b6be83784f8ead 256 Gene3D G3DSA:3.40.50.300 3 248 5.4E-52 T 13-10-2018 RAM_11905 efbab2415026ea2a220a046469e84277 342 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 35 323 1.1E-92 T 13-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 RAM_11905 efbab2415026ea2a220a046469e84277 342 Gene3D G3DSA:3.40.718.10 1 329 5.6E-120 T 13-10-2018 RAM_11905 efbab2415026ea2a220a046469e84277 342 SUPERFAMILY SSF53659 5 328 3.68E-97 T 13-10-2018 RAM_11905 efbab2415026ea2a220a046469e84277 342 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 7 327 6.9E-98 T 13-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 RAM_13220 8f3a1553c709f64e094918d5f0beac7d 255 Pfam PF00480 ROK family 10 168 4.3E-14 T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 RAM_13220 8f3a1553c709f64e094918d5f0beac7d 255 Gene3D G3DSA:3.30.420.40 125 253 2.0E-33 T 13-10-2018 RAM_13220 8f3a1553c709f64e094918d5f0beac7d 255 SUPERFAMILY SSF53067 9 251 3.09E-30 T 13-10-2018 RAM_13220 8f3a1553c709f64e094918d5f0beac7d 255 Gene3D G3DSA:3.30.420.40 2 112 3.0E-21 T 13-10-2018 RAM_36025 f93a36ba24fd392c430827bbc7e2cdcd 65 Pfam PF13370 4Fe-4S single cluster domain of Ferredoxin I 5 61 2.5E-12 T 13-10-2018 RAM_36025 f93a36ba24fd392c430827bbc7e2cdcd 65 PRINTS PR00352 3Fe-4S ferredoxin signature 5 16 2.9E-5 T 13-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 RAM_36025 f93a36ba24fd392c430827bbc7e2cdcd 65 PRINTS PR00352 3Fe-4S ferredoxin signature 48 60 2.9E-5 T 13-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 RAM_36025 f93a36ba24fd392c430827bbc7e2cdcd 65 PRINTS PR00352 3Fe-4S ferredoxin signature 16 26 2.9E-5 T 13-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 RAM_36025 f93a36ba24fd392c430827bbc7e2cdcd 65 Gene3D G3DSA:3.30.70.20 1 63 1.2E-18 T 13-10-2018 RAM_36025 f93a36ba24fd392c430827bbc7e2cdcd 65 SUPERFAMILY SSF54862 2 62 5.35E-11 T 13-10-2018 RAM_37210 775f92283eb7b955273b9e5323704c80 212 SUPERFAMILY SSF51735 1 208 1.88E-38 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_37210 775f92283eb7b955273b9e5323704c80 212 Gene3D G3DSA:3.40.50.720 1 212 2.8E-46 T 13-10-2018 RAM_37210 775f92283eb7b955273b9e5323704c80 212 Pfam PF13460 NAD(P)H-binding 7 200 7.6E-44 T 13-10-2018 IPR016040 NAD(P)-binding domain RAM_10055 ab2cb7b7ddb163517125acd95fb845f2 94 Gene3D G3DSA:1.10.3470.10 1 93 2.0E-20 T 13-10-2018 IPR037294 ABC transporter, BtuC-like RAM_10055 ab2cb7b7ddb163517125acd95fb845f2 94 Pfam PF01032 FecCD transport family 1 86 1.2E-15 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 RAM_10055 ab2cb7b7ddb163517125acd95fb845f2 94 SUPERFAMILY SSF81345 1 85 2.22E-13 T 13-10-2018 IPR037294 ABC transporter, BtuC-like RAM_31760 ce2684e8feb6a77d41384045d199b3e4 386 Gene3D G3DSA:3.30.565.10 251 372 1.1E-23 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_31760 ce2684e8feb6a77d41384045d199b3e4 386 Pfam PF07730 Histidine kinase 175 242 6.6E-12 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_31760 ce2684e8feb6a77d41384045d199b3e4 386 SUPERFAMILY SSF55874 252 372 1.74E-11 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_13075 99d31c749d38b96bb6f788c6cce2dd2a 290 Pfam PF00294 pfkB family carbohydrate kinase 2 288 1.0E-55 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB RAM_13075 99d31c749d38b96bb6f788c6cce2dd2a 290 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 245 258 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RAM_13075 99d31c749d38b96bb6f788c6cce2dd2a 290 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 37 61 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RAM_13075 99d31c749d38b96bb6f788c6cce2dd2a 290 Gene3D G3DSA:3.40.1190.20 3 290 2.7E-72 T 13-10-2018 IPR029056 Ribokinase-like RAM_13075 99d31c749d38b96bb6f788c6cce2dd2a 290 SUPERFAMILY SSF53613 1 289 2.65E-70 T 13-10-2018 IPR029056 Ribokinase-like RAM_27740 65e5daa2fd645deceb81b703b20a51a7 521 Pfam PF01494 FAD binding domain 6 371 8.6E-89 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_27740 65e5daa2fd645deceb81b703b20a51a7 521 Gene3D G3DSA:3.40.30.120 405 463 1.3E-6 T 13-10-2018 RAM_27740 65e5daa2fd645deceb81b703b20a51a7 521 Gene3D G3DSA:3.40.30.120 464 516 2.3E-7 T 13-10-2018 RAM_27740 65e5daa2fd645deceb81b703b20a51a7 521 Gene3D G3DSA:3.50.50.60 7 369 1.0E-109 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_27740 65e5daa2fd645deceb81b703b20a51a7 521 Gene3D G3DSA:3.30.9.50 73 307 1.0E-109 T 13-10-2018 RAM_27740 65e5daa2fd645deceb81b703b20a51a7 521 SUPERFAMILY SSF51905 6 379 2.29E-55 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_27740 65e5daa2fd645deceb81b703b20a51a7 521 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 7 29 1.2E-41 T 13-10-2018 RAM_27740 65e5daa2fd645deceb81b703b20a51a7 521 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 343 361 1.2E-41 T 13-10-2018 RAM_27740 65e5daa2fd645deceb81b703b20a51a7 521 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 361 377 1.2E-41 T 13-10-2018 RAM_27740 65e5daa2fd645deceb81b703b20a51a7 521 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 167 182 1.2E-41 T 13-10-2018 RAM_27740 65e5daa2fd645deceb81b703b20a51a7 521 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 310 325 1.2E-41 T 13-10-2018 RAM_27740 65e5daa2fd645deceb81b703b20a51a7 521 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 325 341 1.2E-41 T 13-10-2018 RAM_20715 3839bf60b2780855bee1d2d6326f413b 2562 SUPERFAMILY SSF52777 1762 2000 1.48E-38 T 13-10-2018 RAM_20715 3839bf60b2780855bee1d2d6326f413b 2562 TIGRFAM TIGR01720 NRPS-para261: non-ribosomal peptide synthase domain TIGR01720 1875 2024 2.9E-33 T 13-10-2018 IPR010060 Non-ribosomal peptide synthase RAM_20715 3839bf60b2780855bee1d2d6326f413b 2562 ProSitePatterns PS00455 Putative AMP-binding domain signature. 141 152 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_20715 3839bf60b2780855bee1d2d6326f413b 2562 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1159 1170 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_20715 3839bf60b2780855bee1d2d6326f413b 2562 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1543 1558 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_20715 3839bf60b2780855bee1d2d6326f413b 2562 Gene3D G3DSA:3.30.559.30 745 990 1.1E-152 T 13-10-2018 RAM_20715 3839bf60b2780855bee1d2d6326f413b 2562 SUPERFAMILY SSF52777 577 741 5.78E-48 T 13-10-2018 RAM_20715 3839bf60b2780855bee1d2d6326f413b 2562 SUPERFAMILY SSF56801 1006 1532 1.09E-147 T 13-10-2018 RAM_20715 3839bf60b2780855bee1d2d6326f413b 2562 Gene3D G3DSA:3.40.50.12780 1 382 1.5E-107 T 13-10-2018 RAM_20715 3839bf60b2780855bee1d2d6326f413b 2562 Gene3D G3DSA:3.40.50.12780 1013 1407 8.2E-137 T 13-10-2018 RAM_20715 3839bf60b2780855bee1d2d6326f413b 2562 Gene3D G3DSA:3.30.559.10 576 934 1.1E-152 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_20715 3839bf60b2780855bee1d2d6326f413b 2562 SUPERFAMILY SSF52777 1597 1773 1.67E-33 T 13-10-2018 RAM_20715 3839bf60b2780855bee1d2d6326f413b 2562 Gene3D G3DSA:3.30.559.10 2037 2390 1.2E-109 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_20715 3839bf60b2780855bee1d2d6326f413b 2562 ProSitePatterns PS00012 Phosphopantetheine attachment site. 2497 2512 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_20715 3839bf60b2780855bee1d2d6326f413b 2562 SUPERFAMILY SSF56801 2 505 2.75E-126 T 13-10-2018 RAM_20715 3839bf60b2780855bee1d2d6326f413b 2562 SMART SM00823 Phosphopantetheine attachment site 2473 2542 6.8E-4 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_20715 3839bf60b2780855bee1d2d6326f413b 2562 SMART SM00823 Phosphopantetheine attachment site 492 561 1.2E-10 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_20715 3839bf60b2780855bee1d2d6326f413b 2562 SMART SM00823 Phosphopantetheine attachment site 1519 1587 4.0E-4 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_20715 3839bf60b2780855bee1d2d6326f413b 2562 SUPERFAMILY SSF52777 2030 2215 3.11E-40 T 13-10-2018 RAM_20715 3839bf60b2780855bee1d2d6326f413b 2562 SUPERFAMILY SSF47336 2465 2538 6.02E-20 T 13-10-2018 IPR036736 ACP-like superfamily RAM_20715 3839bf60b2780855bee1d2d6326f413b 2562 Gene3D G3DSA:3.30.559.30 2201 2439 1.2E-109 T 13-10-2018 RAM_20715 3839bf60b2780855bee1d2d6326f413b 2562 Pfam PF00550 Phosphopantetheine attachment site 495 557 2.0E-14 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_20715 3839bf60b2780855bee1d2d6326f413b 2562 Pfam PF00550 Phosphopantetheine attachment site 2475 2536 7.2E-15 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_20715 3839bf60b2780855bee1d2d6326f413b 2562 Pfam PF00550 Phosphopantetheine attachment site 1521 1581 2.1E-10 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_20715 3839bf60b2780855bee1d2d6326f413b 2562 Pfam PF00668 Condensation domain 1598 2004 1.1E-53 T 13-10-2018 IPR001242 Condensation domain RAM_20715 3839bf60b2780855bee1d2d6326f413b 2562 Pfam PF00668 Condensation domain 2031 2441 4.7E-64 T 13-10-2018 IPR001242 Condensation domain RAM_20715 3839bf60b2780855bee1d2d6326f413b 2562 Pfam PF00668 Condensation domain 575 1005 2.9E-97 T 13-10-2018 IPR001242 Condensation domain RAM_20715 3839bf60b2780855bee1d2d6326f413b 2562 ProSitePatterns PS00012 Phosphopantetheine attachment site. 516 531 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_20715 3839bf60b2780855bee1d2d6326f413b 2562 Gene3D G3DSA:3.30.300.30 1408 1505 2.3E-34 T 13-10-2018 RAM_20715 3839bf60b2780855bee1d2d6326f413b 2562 SUPERFAMILY SSF52777 747 993 2.56E-63 T 13-10-2018 RAM_20715 3839bf60b2780855bee1d2d6326f413b 2562 SUPERFAMILY SSF47336 1513 1581 6.41E-17 T 13-10-2018 IPR036736 ACP-like superfamily RAM_20715 3839bf60b2780855bee1d2d6326f413b 2562 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 26 412 7.2E-98 T 13-10-2018 IPR010071 Amino acid adenylation domain RAM_20715 3839bf60b2780855bee1d2d6326f413b 2562 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1044 1437 4.7E-128 T 13-10-2018 IPR010071 Amino acid adenylation domain RAM_20715 3839bf60b2780855bee1d2d6326f413b 2562 Gene3D G3DSA:1.10.1200.10 1506 1587 3.5E-24 T 13-10-2018 IPR036736 ACP-like superfamily RAM_20715 3839bf60b2780855bee1d2d6326f413b 2562 Gene3D G3DSA:1.10.1200.10 478 564 2.3E-26 T 13-10-2018 IPR036736 ACP-like superfamily RAM_20715 3839bf60b2780855bee1d2d6326f413b 2562 Pfam PF13193 AMP-binding enzyme C-terminal domain 1421 1494 1.1E-12 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_20715 3839bf60b2780855bee1d2d6326f413b 2562 Pfam PF13193 AMP-binding enzyme C-terminal domain 398 468 3.1E-12 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_20715 3839bf60b2780855bee1d2d6326f413b 2562 Pfam PF00501 AMP-binding enzyme 1023 1413 5.0E-89 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_20715 3839bf60b2780855bee1d2d6326f413b 2562 Pfam PF00501 AMP-binding enzyme 6 388 1.7E-75 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_20715 3839bf60b2780855bee1d2d6326f413b 2562 SMART SM01294 493 557 2.4E-4 T 13-10-2018 RAM_20715 3839bf60b2780855bee1d2d6326f413b 2562 SUPERFAMILY SSF47336 486 557 2.62E-19 T 13-10-2018 IPR036736 ACP-like superfamily RAM_20715 3839bf60b2780855bee1d2d6326f413b 2562 Gene3D G3DSA:1.10.1200.10 2461 2542 1.0E-27 T 13-10-2018 IPR036736 ACP-like superfamily RAM_20715 3839bf60b2780855bee1d2d6326f413b 2562 Gene3D G3DSA:3.30.559.10 1588 1745 3.9E-41 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_20715 3839bf60b2780855bee1d2d6326f413b 2562 Gene3D G3DSA:3.30.559.30 1746 2001 2.5E-73 T 13-10-2018 RAM_20715 3839bf60b2780855bee1d2d6326f413b 2562 Gene3D G3DSA:3.30.300.30 383 477 1.1E-28 T 13-10-2018 RAM_20715 3839bf60b2780855bee1d2d6326f413b 2562 SUPERFAMILY SSF52777 2201 2442 2.28E-51 T 13-10-2018 RAM_45480 81a3129ca2735d58b2e7e20fa9f4c9fc 413 Pfam PF13535 ATP-grasp domain 147 288 1.8E-11 T 13-10-2018 RAM_45480 81a3129ca2735d58b2e7e20fa9f4c9fc 413 Gene3D G3DSA:3.40.50.20 5 126 3.2E-16 T 13-10-2018 RAM_45480 81a3129ca2735d58b2e7e20fa9f4c9fc 413 Gene3D G3DSA:3.30.1490.20 136 193 2.1E-6 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 RAM_45480 81a3129ca2735d58b2e7e20fa9f4c9fc 413 Gene3D G3DSA:3.30.470.20 194 403 2.1E-34 T 13-10-2018 RAM_45480 81a3129ca2735d58b2e7e20fa9f4c9fc 413 SUPERFAMILY SSF56059 101 314 1.22E-31 T 13-10-2018 RAM_27680 5900493cecc4b73edf52f32ffa52cb65 244 SUPERFAMILY SSF51735 6 243 3.1E-81 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_27680 5900493cecc4b73edf52f32ffa52cb65 244 Gene3D G3DSA:3.40.50.720 1 243 3.9E-80 T 13-10-2018 RAM_27680 5900493cecc4b73edf52f32ffa52cb65 244 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_27680 5900493cecc4b73edf52f32ffa52cb65 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 1.8E-36 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_27680 5900493cecc4b73edf52f32ffa52cb65 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 1.8E-36 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_27680 5900493cecc4b73edf52f32ffa52cb65 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 1.8E-36 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_27680 5900493cecc4b73edf52f32ffa52cb65 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.8E-36 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_27680 5900493cecc4b73edf52f32ffa52cb65 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 1.8E-36 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_27680 5900493cecc4b73edf52f32ffa52cb65 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 3.1E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_27680 5900493cecc4b73edf52f32ffa52cb65 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 3.1E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_27680 5900493cecc4b73edf52f32ffa52cb65 244 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 191 2.2E-5 T 13-10-2018 RAM_27680 5900493cecc4b73edf52f32ffa52cb65 244 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 244 1.8E-64 T 13-10-2018 RAM_24435 4423d24235ed1db1785263104e0f4281 2390 Gene3D G3DSA:3.30.559.10 1079 1448 6.4E-133 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_24435 4423d24235ed1db1785263104e0f4281 2390 SUPERFAMILY SSF52777 1076 1275 2.89E-47 T 13-10-2018 RAM_24435 4423d24235ed1db1785263104e0f4281 2390 SUPERFAMILY SSF52777 221 462 4.89E-58 T 13-10-2018 RAM_24435 4423d24235ed1db1785263104e0f4281 2390 Gene3D G3DSA:3.30.559.30 1260 1504 6.4E-133 T 13-10-2018 RAM_24435 4423d24235ed1db1785263104e0f4281 2390 SUPERFAMILY SSF52777 1263 1506 1.45E-59 T 13-10-2018 RAM_24435 4423d24235ed1db1785263104e0f4281 2390 ProSitePatterns PS00455 Putative AMP-binding domain signature. 633 644 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_24435 4423d24235ed1db1785263104e0f4281 2390 Gene3D G3DSA:3.30.300.30 1928 2029 6.8E-28 T 13-10-2018 RAM_24435 4423d24235ed1db1785263104e0f4281 2390 Pfam PF13193 AMP-binding enzyme C-terminal domain 1943 2016 1.2E-9 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_24435 4423d24235ed1db1785263104e0f4281 2390 Pfam PF13193 AMP-binding enzyme C-terminal domain 892 964 2.3E-11 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_24435 4423d24235ed1db1785263104e0f4281 2390 ProSitePatterns PS00012 Phosphopantetheine attachment site. 2069 2084 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_24435 4423d24235ed1db1785263104e0f4281 2390 Gene3D G3DSA:3.30.300.30 879 976 1.7E-29 T 13-10-2018 RAM_24435 4423d24235ed1db1785263104e0f4281 2390 SMART SM00824 Thioesterase 2141 2378 7.6E-5 T 13-10-2018 IPR020802 Polyketide synthase, thioesterase domain GO:0009058|GO:0016788 RAM_24435 4423d24235ed1db1785263104e0f4281 2390 Gene3D G3DSA:3.40.50.12780 480 878 1.1E-133 T 13-10-2018 RAM_24435 4423d24235ed1db1785263104e0f4281 2390 SUPERFAMILY SSF56801 1511 2056 9.68E-136 T 13-10-2018 RAM_24435 4423d24235ed1db1785263104e0f4281 2390 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1014 1029 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_24435 4423d24235ed1db1785263104e0f4281 2390 SMART SM00823 Phosphopantetheine attachment site 2045 2114 0.004 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_24435 4423d24235ed1db1785263104e0f4281 2390 SMART SM00823 Phosphopantetheine attachment site 990 1059 1.1E-9 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_24435 4423d24235ed1db1785263104e0f4281 2390 SUPERFAMILY SSF56801 455 1003 2.22E-152 T 13-10-2018 RAM_24435 4423d24235ed1db1785263104e0f4281 2390 Pfam PF00501 AMP-binding enzyme 497 884 8.8E-98 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_24435 4423d24235ed1db1785263104e0f4281 2390 Pfam PF00501 AMP-binding enzyme 1532 1935 1.1E-83 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_24435 4423d24235ed1db1785263104e0f4281 2390 Gene3D G3DSA:3.40.50.1820 2118 2386 3.7E-60 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_24435 4423d24235ed1db1785263104e0f4281 2390 Pfam PF00668 Condensation domain 38 475 1.5E-87 T 13-10-2018 IPR001242 Condensation domain RAM_24435 4423d24235ed1db1785263104e0f4281 2390 Pfam PF00668 Condensation domain 1076 1508 6.4E-89 T 13-10-2018 IPR001242 Condensation domain RAM_24435 4423d24235ed1db1785263104e0f4281 2390 SUPERFAMILY SSF52777 39 213 8.89E-45 T 13-10-2018 RAM_24435 4423d24235ed1db1785263104e0f4281 2390 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1674 1685 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_24435 4423d24235ed1db1785263104e0f4281 2390 SUPERFAMILY SSF47336 2038 2111 3.01E-16 T 13-10-2018 IPR036736 ACP-like superfamily RAM_24435 4423d24235ed1db1785263104e0f4281 2390 Gene3D G3DSA:1.10.1200.10 2034 2113 7.7E-23 T 13-10-2018 IPR036736 ACP-like superfamily RAM_24435 4423d24235ed1db1785263104e0f4281 2390 PRINTS PR00154 AMP-binding signature 628 639 6.1E-5 T 13-10-2018 IPR020459 AMP-binding RAM_24435 4423d24235ed1db1785263104e0f4281 2390 PRINTS PR00154 AMP-binding signature 640 648 6.1E-5 T 13-10-2018 IPR020459 AMP-binding RAM_24435 4423d24235ed1db1785263104e0f4281 2390 Gene3D G3DSA:3.30.559.10 39 406 4.6E-132 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_24435 4423d24235ed1db1785263104e0f4281 2390 Pfam PF00975 Thioesterase domain 2130 2374 6.3E-32 T 13-10-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 RAM_24435 4423d24235ed1db1785263104e0f4281 2390 Gene3D G3DSA:3.40.50.12780 1522 1927 9.5E-123 T 13-10-2018 RAM_24435 4423d24235ed1db1785263104e0f4281 2390 SUPERFAMILY SSF47336 983 1056 9.42E-20 T 13-10-2018 IPR036736 ACP-like superfamily RAM_24435 4423d24235ed1db1785263104e0f4281 2390 Gene3D G3DSA:1.10.1200.10 977 1061 4.2E-27 T 13-10-2018 IPR036736 ACP-like superfamily RAM_24435 4423d24235ed1db1785263104e0f4281 2390 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1552 1959 1.2E-118 T 13-10-2018 IPR010071 Amino acid adenylation domain RAM_24435 4423d24235ed1db1785263104e0f4281 2390 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 516 907 1.6E-131 T 13-10-2018 IPR010071 Amino acid adenylation domain RAM_24435 4423d24235ed1db1785263104e0f4281 2390 Gene3D G3DSA:3.30.559.30 217 461 4.6E-132 T 13-10-2018 RAM_24435 4423d24235ed1db1785263104e0f4281 2390 SUPERFAMILY SSF53474 2116 2378 7.6E-55 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_24435 4423d24235ed1db1785263104e0f4281 2390 Pfam PF00550 Phosphopantetheine attachment site 992 1054 3.0E-13 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_24435 4423d24235ed1db1785263104e0f4281 2390 Pfam PF00550 Phosphopantetheine attachment site 2050 2109 8.0E-11 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_25595 51a3b22d355edcf49d14e6a15f1d70da 155 Gene3D G3DSA:1.20.120.450 2 154 1.0E-28 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_25595 51a3b22d355edcf49d14e6a15f1d70da 155 SUPERFAMILY SSF109854 3 150 1.83E-34 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_25595 51a3b22d355edcf49d14e6a15f1d70da 155 Pfam PF04978 Protein of unknown function (DUF664) 9 151 9.9E-36 T 13-10-2018 IPR007061 Protein of unknown function DUF664 RAM_21185 53ff9462286589a226d772c4334d98e9 299 Gene3D G3DSA:1.10.10.10 5 94 2.0E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_21185 53ff9462286589a226d772c4334d98e9 299 SUPERFAMILY SSF46785 5 114 3.47E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_21185 53ff9462286589a226d772c4334d98e9 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 4.4E-16 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_21185 53ff9462286589a226d772c4334d98e9 299 Gene3D G3DSA:3.40.190.290 95 298 8.2E-37 T 13-10-2018 RAM_21185 53ff9462286589a226d772c4334d98e9 299 Pfam PF03466 LysR substrate binding domain 92 294 9.5E-45 T 13-10-2018 IPR005119 LysR, substrate-binding RAM_21185 53ff9462286589a226d772c4334d98e9 299 SUPERFAMILY SSF53850 95 295 1.0E-40 T 13-10-2018 RAM_25910 13f21e5d181dd35f0a0e431ebd6d5e96 376 Gene3D G3DSA:3.40.50.1820 123 375 4.0E-54 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_25910 13f21e5d181dd35f0a0e431ebd6d5e96 376 Gene3D G3DSA:1.20.1440.110 9 122 1.1E-12 T 13-10-2018 RAM_25910 13f21e5d181dd35f0a0e431ebd6d5e96 376 SUPERFAMILY SSF53474 8 374 3.91E-55 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_25910 13f21e5d181dd35f0a0e431ebd6d5e96 376 Pfam PF00326 Prolyl oligopeptidase family 204 333 9.2E-9 T 13-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 RAM_02510 a7ced95c4df64a537745d463b67a911f 428 Gene3D G3DSA:2.40.420.20 313 379 8.5E-14 T 13-10-2018 RAM_02510 a7ced95c4df64a537745d463b67a911f 428 Gene3D G3DSA:2.40.50.100 62 127 8.4E-10 T 13-10-2018 RAM_02510 a7ced95c4df64a537745d463b67a911f 428 Pfam PF13533 Biotin-lipoyl like 65 105 2.6E-9 T 13-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain RAM_02510 a7ced95c4df64a537745d463b67a911f 428 Pfam PF13437 HlyD family secretion protein 226 306 1.5E-7 T 13-10-2018 RAM_02510 a7ced95c4df64a537745d463b67a911f 428 SUPERFAMILY SSF111369 63 187 2.75E-9 T 13-10-2018 RAM_02510 a7ced95c4df64a537745d463b67a911f 428 Gene3D G3DSA:2.40.30.170 229 312 3.0E-17 T 13-10-2018 RAM_33070 aac7c43f28b2361947e77169e4d68e95 247 Pfam PF00296 Luciferase-like monooxygenase 6 176 8.2E-27 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_33070 aac7c43f28b2361947e77169e4d68e95 247 Gene3D G3DSA:3.20.20.30 3 235 1.1E-39 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_33070 aac7c43f28b2361947e77169e4d68e95 247 SUPERFAMILY SSF51679 10 237 2.5E-36 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_15765 f5a52bc5883c8a67a4169613cb2da164 470 SUPERFAMILY SSF53474 71 442 2.16E-24 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_15765 f5a52bc5883c8a67a4169613cb2da164 470 Pfam PF00561 alpha/beta hydrolase fold 94 444 1.0E-26 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_17010 d2bb9a2505332b42001297638bd395fa 193 Gene3D G3DSA:1.10.10.60 3 55 3.3E-18 T 13-10-2018 RAM_17010 d2bb9a2505332b42001297638bd395fa 193 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 59 3.1E-13 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_17010 d2bb9a2505332b42001297638bd395fa 193 SUPERFAMILY SSF48498 75 191 1.74E-11 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_17010 d2bb9a2505332b42001297638bd395fa 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 3.6E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_17010 d2bb9a2505332b42001297638bd395fa 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 3.6E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_17010 d2bb9a2505332b42001297638bd395fa 193 Gene3D G3DSA:1.10.357.10 56 193 7.0E-21 T 13-10-2018 RAM_17010 d2bb9a2505332b42001297638bd395fa 193 Pfam PF16859 Bacterial transcriptional repressor C-terminal 74 186 6.0E-22 T 13-10-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RAM_17010 d2bb9a2505332b42001297638bd395fa 193 SUPERFAMILY SSF46689 5 71 1.8E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_08380 d04e7115017108978f068906d8c87f2b 501 Gene3D G3DSA:3.20.110.10 2 387 1.3E-103 T 13-10-2018 IPR027291 Glycoside hydrolase 38, N-terminal domain superfamily RAM_08380 d04e7115017108978f068906d8c87f2b 501 Gene3D G3DSA:1.20.1430.10 395 501 3.7E-15 T 13-10-2018 IPR037090 Glycoside hydrolase families 57, central domain KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 RAM_08380 d04e7115017108978f068906d8c87f2b 501 Pfam PF09210 Domain of unknown function (DUF1957) 403 496 1.5E-19 T 13-10-2018 IPR015293 Domain of unknown function DUF1957 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 RAM_08380 d04e7115017108978f068906d8c87f2b 501 SUPERFAMILY SSF88688 382 498 4.58E-18 T 13-10-2018 IPR028995 Glycoside hydrolase families 57/38, central domain superfamily RAM_08380 d04e7115017108978f068906d8c87f2b 501 SUPERFAMILY SSF88713 4 387 2.31E-89 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RAM_08380 d04e7115017108978f068906d8c87f2b 501 Pfam PF03065 Glycosyl hydrolase family 57 8 337 3.2E-23 T 13-10-2018 IPR004300 Glycoside hydrolase family 57, N-terminal domain GO:0003824|GO:0005975 RAM_29125 0838854164e79184d3bb6b534a5f6922 263 Gene3D G3DSA:3.40.50.720 1 261 1.6E-59 T 13-10-2018 RAM_29125 0838854164e79184d3bb6b534a5f6922 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 2.4E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_29125 0838854164e79184d3bb6b534a5f6922 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 222 242 2.4E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_29125 0838854164e79184d3bb6b534a5f6922 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 2.4E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_29125 0838854164e79184d3bb6b534a5f6922 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 2.4E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_29125 0838854164e79184d3bb6b534a5f6922 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 13 30 2.4E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_29125 0838854164e79184d3bb6b534a5f6922 263 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 19 258 3.8E-44 T 13-10-2018 RAM_29125 0838854164e79184d3bb6b534a5f6922 263 SUPERFAMILY SSF51735 11 259 1.01E-62 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_45205 3e428a1e04b254e51ec0d92dc1d25911 576 SUPERFAMILY SSF56601 71 406 1.76E-82 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_45205 3e428a1e04b254e51ec0d92dc1d25911 576 Pfam PF05547 Immune inhibitor A peptidase M6 421 557 1.2E-7 T 13-10-2018 IPR008757 Peptidase M6-like, domain GO:0006508|GO:0008233 RAM_45205 3e428a1e04b254e51ec0d92dc1d25911 576 Gene3D G3DSA:3.40.710.10 33 415 4.3E-89 T 13-10-2018 RAM_45205 3e428a1e04b254e51ec0d92dc1d25911 576 Pfam PF00144 Beta-lactamase 77 405 4.7E-73 T 13-10-2018 IPR001466 Beta-lactamase-related RAM_22275 2968148b7846d1a5bc6567b0c71a3ac6 476 Pfam PF09362 Domain of unknown function (DUF1996) 318 454 7.3E-17 T 13-10-2018 IPR018535 Domain of unknown function DUF1996 RAM_22345 c5c3472e5d6ec113c300dd00ce69c36d 1370 PRINTS PR00742 Glycosyl hydrolase family 35 signature 132 151 1.5E-24 T 13-10-2018 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_22345 c5c3472e5d6ec113c300dd00ce69c36d 1370 PRINTS PR00742 Glycosyl hydrolase family 35 signature 341 357 1.5E-24 T 13-10-2018 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_22345 c5c3472e5d6ec113c300dd00ce69c36d 1370 PRINTS PR00742 Glycosyl hydrolase family 35 signature 77 95 1.5E-24 T 13-10-2018 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_22345 c5c3472e5d6ec113c300dd00ce69c36d 1370 PRINTS PR00742 Glycosyl hydrolase family 35 signature 55 72 1.5E-24 T 13-10-2018 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_22345 c5c3472e5d6ec113c300dd00ce69c36d 1370 PRINTS PR00742 Glycosyl hydrolase family 35 signature 280 295 1.5E-24 T 13-10-2018 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_22345 c5c3472e5d6ec113c300dd00ce69c36d 1370 PRINTS PR00742 Glycosyl hydrolase family 35 signature 322 337 1.5E-24 T 13-10-2018 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_22345 c5c3472e5d6ec113c300dd00ce69c36d 1370 PRINTS PR00742 Glycosyl hydrolase family 35 signature 187 202 1.5E-24 T 13-10-2018 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_22345 c5c3472e5d6ec113c300dd00ce69c36d 1370 Pfam PF08305 NPCBM/NEW2 domain 1225 1363 5.4E-44 T 13-10-2018 IPR013222 Glycosyl hydrolase family 98, putative carbohydrate-binding module RAM_22345 c5c3472e5d6ec113c300dd00ce69c36d 1370 Pfam PF01301 Glycosyl hydrolases family 35 51 367 2.1E-92 T 13-10-2018 IPR031330 Glycoside hydrolase 35, catalytic domain KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_22345 c5c3472e5d6ec113c300dd00ce69c36d 1370 SUPERFAMILY SSF49785 945 1087 1.11E-38 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_22345 c5c3472e5d6ec113c300dd00ce69c36d 1370 Gene3D G3DSA:2.60.120.260 953 1104 2.5E-52 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_22345 c5c3472e5d6ec113c300dd00ce69c36d 1370 SMART SM00776 1219 1364 2.9E-53 T 13-10-2018 IPR013222 Glycosyl hydrolase family 98, putative carbohydrate-binding module RAM_22345 c5c3472e5d6ec113c300dd00ce69c36d 1370 SUPERFAMILY SSF117100 690 769 6.02E-13 T 13-10-2018 IPR036833 Beta-galactosidase, domain 3 superfamily KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_22345 c5c3472e5d6ec113c300dd00ce69c36d 1370 Pfam PF10435 Beta-galactosidase, domain 2 574 698 3.2E-23 T 13-10-2018 IPR018954 Beta-galactosidase, domain 2 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_22345 c5c3472e5d6ec113c300dd00ce69c36d 1370 SUPERFAMILY SSF49785 1222 1362 3.36E-39 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_22345 c5c3472e5d6ec113c300dd00ce69c36d 1370 Pfam PF13364 Beta-galactosidase jelly roll domain 795 903 6.6E-25 T 13-10-2018 IPR025300 Beta-galactosidase jelly roll domain KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024096|Reactome: R-HSA-2206308|Reactome: R-HSA-4085001|Reactome: R-HSA-6798695 RAM_22345 c5c3472e5d6ec113c300dd00ce69c36d 1370 Pfam PF13364 Beta-galactosidase jelly roll domain 958 1066 2.5E-32 T 13-10-2018 IPR025300 Beta-galactosidase jelly roll domain KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024096|Reactome: R-HSA-2206308|Reactome: R-HSA-4085001|Reactome: R-HSA-6798695 RAM_22345 c5c3472e5d6ec113c300dd00ce69c36d 1370 Pfam PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase 1123 1189 3.1E-8 T 13-10-2018 IPR018905 Alpha-galactosidase, NEW3 domain RAM_22345 c5c3472e5d6ec113c300dd00ce69c36d 1370 SMART SM01029 517 698 6.3E-35 T 13-10-2018 IPR018954 Beta-galactosidase, domain 2 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_22345 c5c3472e5d6ec113c300dd00ce69c36d 1370 Gene3D G3DSA:2.60.120.1060 1219 1363 6.9E-42 T 13-10-2018 IPR038637 NPCBM domain superfamily RAM_22345 c5c3472e5d6ec113c300dd00ce69c36d 1370 SUPERFAMILY SSF49785 773 942 5.95E-32 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_22345 c5c3472e5d6ec113c300dd00ce69c36d 1370 Gene3D G3DSA:3.20.20.80 38 378 8.2E-130 T 13-10-2018 RAM_22345 c5c3472e5d6ec113c300dd00ce69c36d 1370 Gene3D G3DSA:2.102.20.10 518 698 1.5E-27 T 13-10-2018 IPR037110 Beta-galactosidase, domain 2 superfamily KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_22345 c5c3472e5d6ec113c300dd00ce69c36d 1370 SUPERFAMILY SSF51445 42 365 8.52E-94 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_22345 c5c3472e5d6ec113c300dd00ce69c36d 1370 Gene3D G3DSA:2.60.120.260 788 952 2.8E-53 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_22345 c5c3472e5d6ec113c300dd00ce69c36d 1370 SUPERFAMILY SSF51011 542 686 3.67E-25 T 13-10-2018 RAM_22345 c5c3472e5d6ec113c300dd00ce69c36d 1370 Pfam PF13363 Beta-galactosidase, domain 3 704 764 2.2E-8 T 13-10-2018 IPR025972 Beta-galactosidase, domain 3 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_44470 ab009d3390b1b2ba52728018d4be54de 229 Gene3D G3DSA:1.10.1660.10 116 229 7.5E-19 T 13-10-2018 RAM_44470 ab009d3390b1b2ba52728018d4be54de 229 Pfam PF13411 MerR HTH family regulatory protein 119 186 7.5E-15 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_44470 ab009d3390b1b2ba52728018d4be54de 229 ProSitePatterns PS00552 MerR-type HTH domain signature. 121 143 - T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_44470 ab009d3390b1b2ba52728018d4be54de 229 Gene3D G3DSA:1.10.1660.10 4 115 6.0E-13 T 13-10-2018 RAM_44470 ab009d3390b1b2ba52728018d4be54de 229 Pfam PF00376 MerR family regulatory protein 4 39 3.8E-12 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_44470 ab009d3390b1b2ba52728018d4be54de 229 SMART SM00422 1 72 0.002 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_44470 ab009d3390b1b2ba52728018d4be54de 229 SMART SM00422 118 187 6.2E-9 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_44470 ab009d3390b1b2ba52728018d4be54de 229 SUPERFAMILY SSF46955 118 224 4.03E-17 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily RAM_44470 ab009d3390b1b2ba52728018d4be54de 229 SUPERFAMILY SSF46955 4 105 1.97E-12 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily RAM_18540 411fb2553821fb16c8c8a661e9ebc431 651 Gene3D G3DSA:2.60.120.1060 506 650 1.2E-39 T 13-10-2018 IPR038637 NPCBM domain superfamily RAM_18540 411fb2553821fb16c8c8a661e9ebc431 651 Pfam PF17450 Alpha galactosidase A C-terminal beta sandwich domain 304 352 5.5E-7 T 13-10-2018 IPR035373 Alpha galactosidase A, C-terminal beta-sandwich domain RAM_18540 411fb2553821fb16c8c8a661e9ebc431 651 Gene3D G3DSA:2.60.40.1180 304 390 1.3E-24 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta RAM_18540 411fb2553821fb16c8c8a661e9ebc431 651 Gene3D G3DSA:3.20.20.70 30 302 7.0E-125 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_18540 411fb2553821fb16c8c8a661e9ebc431 651 SUPERFAMILY SSF51011 296 388 2.59E-21 T 13-10-2018 RAM_18540 411fb2553821fb16c8c8a661e9ebc431 651 Pfam PF16499 Alpha galactosidase A 37 301 9.0E-81 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_18540 411fb2553821fb16c8c8a661e9ebc431 651 PRINTS PR00740 Glycosyl hydrolase family 27 signature 67 82 5.3E-63 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_18540 411fb2553821fb16c8c8a661e9ebc431 651 PRINTS PR00740 Glycosyl hydrolase family 27 signature 170 188 5.3E-63 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_18540 411fb2553821fb16c8c8a661e9ebc431 651 PRINTS PR00740 Glycosyl hydrolase family 27 signature 143 160 5.3E-63 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_18540 411fb2553821fb16c8c8a661e9ebc431 651 PRINTS PR00740 Glycosyl hydrolase family 27 signature 31 50 5.3E-63 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_18540 411fb2553821fb16c8c8a661e9ebc431 651 PRINTS PR00740 Glycosyl hydrolase family 27 signature 257 278 5.3E-63 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_18540 411fb2553821fb16c8c8a661e9ebc431 651 PRINTS PR00740 Glycosyl hydrolase family 27 signature 236 255 5.3E-63 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_18540 411fb2553821fb16c8c8a661e9ebc431 651 PRINTS PR00740 Glycosyl hydrolase family 27 signature 108 129 5.3E-63 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_18540 411fb2553821fb16c8c8a661e9ebc431 651 SUPERFAMILY SSF51445 32 301 5.15E-96 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_18540 411fb2553821fb16c8c8a661e9ebc431 651 Pfam PF08305 NPCBM/NEW2 domain 510 649 1.3E-41 T 13-10-2018 IPR013222 Glycosyl hydrolase family 98, putative carbohydrate-binding module RAM_18540 411fb2553821fb16c8c8a661e9ebc431 651 SUPERFAMILY SSF49785 510 649 6.38E-36 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_18540 411fb2553821fb16c8c8a661e9ebc431 651 Pfam PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase 411 469 4.8E-6 T 13-10-2018 IPR018905 Alpha-galactosidase, NEW3 domain RAM_18540 411fb2553821fb16c8c8a661e9ebc431 651 SMART SM00776 507 651 1.2E-51 T 13-10-2018 IPR013222 Glycosyl hydrolase family 98, putative carbohydrate-binding module RAM_47210 c87134f165fb44ee2100aeb3d19a8f92 160 Gene3D G3DSA:3.30.530.20 9 159 4.6E-35 T 13-10-2018 IPR023393 START-like domain superfamily RAM_47210 c87134f165fb44ee2100aeb3d19a8f92 160 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 10 157 1.9E-15 T 13-10-2018 IPR019587 Polyketide cyclase/dehydrase RAM_47210 c87134f165fb44ee2100aeb3d19a8f92 160 SUPERFAMILY SSF55961 11 158 5.3E-18 T 13-10-2018 RAM_46440 e6e3a2653ffa93826573ea81625fb551 331 Gene3D G3DSA:1.10.10.10 258 326 3.5E-11 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_46440 e6e3a2653ffa93826573ea81625fb551 331 SMART SM00418 260 331 1.5E-4 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_46440 e6e3a2653ffa93826573ea81625fb551 331 Pfam PF01022 Bacterial regulatory protein, arsR family 274 306 3.2E-5 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_46440 e6e3a2653ffa93826573ea81625fb551 331 SUPERFAMILY SSF46785 264 327 1.91E-11 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_32865 88e51150655954dc92096b3376755bb5 185 Gene3D G3DSA:1.10.357.10 2 184 2.5E-44 T 13-10-2018 RAM_32865 88e51150655954dc92096b3376755bb5 185 SUPERFAMILY SSF46689 3 78 3.85E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_32865 88e51150655954dc92096b3376755bb5 185 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 7 20 3.0E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_32865 88e51150655954dc92096b3376755bb5 185 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 51 3.0E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_32865 88e51150655954dc92096b3376755bb5 185 Pfam PF00440 Bacterial regulatory proteins, tetR family 8 53 4.4E-12 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_32865 88e51150655954dc92096b3376755bb5 185 SUPERFAMILY SSF48498 74 182 2.11E-21 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_32865 88e51150655954dc92096b3376755bb5 185 Pfam PF16925 Bacterial transcriptional repressor C-terminal 88 180 2.1E-7 T 13-10-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RAM_47605 0b07f8cc3744edaa5f97082a5446ab54 172 Pfam PF04542 Sigma-70 region 2 18 78 7.0E-6 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_47605 0b07f8cc3744edaa5f97082a5446ab54 172 SUPERFAMILY SSF88946 14 94 1.77E-12 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_47605 0b07f8cc3744edaa5f97082a5446ab54 172 Gene3D G3DSA:1.10.10.10 79 167 1.6E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_47605 0b07f8cc3744edaa5f97082a5446ab54 172 SUPERFAMILY SSF88659 101 165 6.76E-16 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_47605 0b07f8cc3744edaa5f97082a5446ab54 172 Pfam PF08281 Sigma-70, region 4 108 160 8.7E-15 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_47605 0b07f8cc3744edaa5f97082a5446ab54 172 Gene3D G3DSA:1.10.1740.10 6 78 1.8E-10 T 13-10-2018 RAM_47605 0b07f8cc3744edaa5f97082a5446ab54 172 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 16 164 1.1E-23 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_30180 140763afff0906bbff3674ac9daef456 239 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 77 88 2.6E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_30180 140763afff0906bbff3674ac9daef456 239 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 138 2.6E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_30180 140763afff0906bbff3674ac9daef456 239 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 169 2.6E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_30180 140763afff0906bbff3674ac9daef456 239 Gene3D G3DSA:3.40.50.720 1 237 8.2E-67 T 13-10-2018 RAM_30180 140763afff0906bbff3674ac9daef456 239 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 137 165 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_30180 140763afff0906bbff3674ac9daef456 239 SUPERFAMILY SSF51735 2 226 2.86E-62 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_30180 140763afff0906bbff3674ac9daef456 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 6.1E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_30180 140763afff0906bbff3674ac9daef456 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 170 187 6.1E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_30180 140763afff0906bbff3674ac9daef456 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 6.1E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_30180 140763afff0906bbff3674ac9daef456 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 124 140 6.1E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_30180 140763afff0906bbff3674ac9daef456 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 169 6.1E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_30180 140763afff0906bbff3674ac9daef456 239 Pfam PF00106 short chain dehydrogenase 2 191 6.0E-49 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_09875 d5a021bc39b2f08ef324c018add75327 434 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 259 428 4.6E-49 T 13-10-2018 IPR000160 GGDEF domain RAM_09875 d5a021bc39b2f08ef324c018add75327 434 SMART SM00267 252 430 1.3E-55 T 13-10-2018 IPR000160 GGDEF domain RAM_09875 d5a021bc39b2f08ef324c018add75327 434 SUPERFAMILY SSF55073 269 428 4.08E-45 T 13-10-2018 IPR029787 Nucleotide cyclase RAM_09875 d5a021bc39b2f08ef324c018add75327 434 Pfam PF00990 Diguanylate cyclase, GGDEF domain 263 426 6.6E-43 T 13-10-2018 IPR000160 GGDEF domain RAM_09875 d5a021bc39b2f08ef324c018add75327 434 Gene3D G3DSA:3.30.70.270 257 431 1.6E-54 T 13-10-2018 RAM_28055 b720f9e4e4a91fe1f4b68cecf88a2cea 125 Gene3D G3DSA:3.10.450.50 2 125 5.9E-42 T 13-10-2018 RAM_28055 b720f9e4e4a91fe1f4b68cecf88a2cea 125 SUPERFAMILY SSF54427 5 115 8.01E-28 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_28055 b720f9e4e4a91fe1f4b68cecf88a2cea 125 Pfam PF12680 SnoaL-like domain 10 107 1.8E-14 T 13-10-2018 IPR037401 SnoaL-like domain RAM_19565 60dc2630d32567221931ff585e81ebf0 689 Gene3D G3DSA:3.40.50.720 6 133 2.9E-36 T 13-10-2018 RAM_19565 60dc2630d32567221931ff585e81ebf0 689 Gene3D G3DSA:3.30.1490.20 491 564 2.5E-50 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 RAM_19565 60dc2630d32567221931ff585e81ebf0 689 Pfam PF13549 ATP-grasp domain 471 681 4.3E-45 T 13-10-2018 RAM_19565 60dc2630d32567221931ff585e81ebf0 689 Gene3D G3DSA:3.40.50.261 135 297 2.8E-34 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RAM_19565 60dc2630d32567221931ff585e81ebf0 689 SUPERFAMILY SSF56059 473 681 9.71E-25 T 13-10-2018 RAM_19565 60dc2630d32567221931ff585e81ebf0 689 SUPERFAMILY SSF52210 308 456 2.75E-17 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RAM_19565 60dc2630d32567221931ff585e81ebf0 689 SUPERFAMILY SSF52210 136 299 1.44E-28 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RAM_19565 60dc2630d32567221931ff585e81ebf0 689 Pfam PF13380 CoA binding domain 13 138 1.4E-22 T 13-10-2018 IPR003781 CoA-binding GO:0048037 RAM_19565 60dc2630d32567221931ff585e81ebf0 689 Gene3D G3DSA:3.30.470.20 473 679 2.5E-50 T 13-10-2018 RAM_19565 60dc2630d32567221931ff585e81ebf0 689 Gene3D G3DSA:3.40.50.261 306 458 4.6E-15 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RAM_19565 60dc2630d32567221931ff585e81ebf0 689 SUPERFAMILY SSF51735 4 143 5.76E-33 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_19565 60dc2630d32567221931ff585e81ebf0 689 SMART SM00881 9 104 3.6E-28 T 13-10-2018 IPR003781 CoA-binding GO:0048037 RAM_19565 60dc2630d32567221931ff585e81ebf0 689 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 159 292 1.7E-31 T 13-10-2018 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain RAM_06850 757457f1541c5901aff415796a96f914 268 Pfam PF13365 Trypsin-like peptidase domain 95 236 2.1E-7 T 13-10-2018 RAM_06850 757457f1541c5901aff415796a96f914 268 Gene3D G3DSA:2.40.10.10 71 172 7.1E-24 T 13-10-2018 RAM_06850 757457f1541c5901aff415796a96f914 268 Gene3D G3DSA:2.40.10.10 174 268 2.5E-6 T 13-10-2018 RAM_06850 757457f1541c5901aff415796a96f914 268 SUPERFAMILY SSF50494 58 252 5.56E-21 T 13-10-2018 IPR009003 Peptidase S1, PA clan RAM_06850 757457f1541c5901aff415796a96f914 268 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 104 109 - T 13-10-2018 IPR018114 Serine proteases, trypsin family, histidine active site GO:0004252|GO:0006508 RAM_18755 5d096ad57032e3ddda2664ffef9a28f1 953 Gene3D G3DSA:3.30.559.10 15 373 1.5E-95 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_18755 5d096ad57032e3ddda2664ffef9a28f1 953 Gene3D G3DSA:3.30.559.30 184 429 1.5E-95 T 13-10-2018 RAM_18755 5d096ad57032e3ddda2664ffef9a28f1 953 Pfam PF00550 Phosphopantetheine attachment site 469 508 1.3E-4 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_18755 5d096ad57032e3ddda2664ffef9a28f1 953 SUPERFAMILY SSF47336 461 538 1.07E-7 T 13-10-2018 IPR036736 ACP-like superfamily RAM_18755 5d096ad57032e3ddda2664ffef9a28f1 953 SUPERFAMILY SSF52777 717 946 1.67E-35 T 13-10-2018 RAM_18755 5d096ad57032e3ddda2664ffef9a28f1 953 SUPERFAMILY SSF52777 217 429 2.11E-41 T 13-10-2018 RAM_18755 5d096ad57032e3ddda2664ffef9a28f1 953 SUPERFAMILY SSF52777 546 702 8.89E-29 T 13-10-2018 RAM_18755 5d096ad57032e3ddda2664ffef9a28f1 953 Gene3D G3DSA:1.10.1200.10 446 533 7.9E-10 T 13-10-2018 IPR036736 ACP-like superfamily RAM_18755 5d096ad57032e3ddda2664ffef9a28f1 953 Pfam PF00668 Condensation domain 12 434 3.8E-60 T 13-10-2018 IPR001242 Condensation domain RAM_18755 5d096ad57032e3ddda2664ffef9a28f1 953 Pfam PF00668 Condensation domain 722 951 2.1E-24 T 13-10-2018 IPR001242 Condensation domain RAM_18755 5d096ad57032e3ddda2664ffef9a28f1 953 Pfam PF00668 Condensation domain 545 698 5.7E-24 T 13-10-2018 IPR001242 Condensation domain RAM_18755 5d096ad57032e3ddda2664ffef9a28f1 953 Gene3D G3DSA:3.30.559.10 546 892 7.0E-79 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_18755 5d096ad57032e3ddda2664ffef9a28f1 953 SUPERFAMILY SSF52777 15 180 6.45E-36 T 13-10-2018 RAM_18755 5d096ad57032e3ddda2664ffef9a28f1 953 Gene3D G3DSA:3.30.559.30 707 947 7.0E-79 T 13-10-2018 RAM_30675 1094386dc5f873c1540689356412448b 329 Pfam PF07730 Histidine kinase 136 198 6.0E-8 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_30675 1094386dc5f873c1540689356412448b 329 Gene3D G3DSA:3.30.565.10 195 317 1.5E-17 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_30675 1094386dc5f873c1540689356412448b 329 SUPERFAMILY SSF55874 193 316 1.5E-5 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_33945 773031ea4c6986b33ba6d547d1e7c05f 169 Pfam PF04505 Interferon-induced transmembrane protein 90 154 2.2E-11 T 13-10-2018 IPR007593 CD225/Dispanin family GO:0016021 RAM_07785 860873e9bf810c36791365a7b561bbcb 409 Gene3D G3DSA:1.50.10.10 3 404 1.5E-110 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 RAM_07785 860873e9bf810c36791365a7b561bbcb 409 SUPERFAMILY SSF48208 19 406 2.72E-75 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_07785 860873e9bf810c36791365a7b561bbcb 409 Pfam PF01204 Trehalase 222 371 3.5E-7 T 13-10-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 RAM_42820 22018a6229bcc95bbb58015bc8cc5158 424 SUPERFAMILY SSF103473 3 416 5.23E-61 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_42820 22018a6229bcc95bbb58015bc8cc5158 424 PRINTS PR01036 Tetracycline resistance protein TetB signature 7 31 5.8E-9 T 13-10-2018 RAM_42820 22018a6229bcc95bbb58015bc8cc5158 424 PRINTS PR01036 Tetracycline resistance protein TetB signature 95 115 5.8E-9 T 13-10-2018 RAM_42820 22018a6229bcc95bbb58015bc8cc5158 424 PRINTS PR01036 Tetracycline resistance protein TetB signature 125 149 5.8E-9 T 13-10-2018 RAM_42820 22018a6229bcc95bbb58015bc8cc5158 424 PRINTS PR01036 Tetracycline resistance protein TetB signature 209 227 5.8E-9 T 13-10-2018 RAM_42820 22018a6229bcc95bbb58015bc8cc5158 424 PRINTS PR01036 Tetracycline resistance protein TetB signature 242 267 5.8E-9 T 13-10-2018 RAM_42820 22018a6229bcc95bbb58015bc8cc5158 424 PRINTS PR01036 Tetracycline resistance protein TetB signature 372 391 5.8E-9 T 13-10-2018 RAM_42820 22018a6229bcc95bbb58015bc8cc5158 424 Gene3D G3DSA:1.20.1720.10 4 227 3.1E-35 T 13-10-2018 RAM_42820 22018a6229bcc95bbb58015bc8cc5158 424 Gene3D G3DSA:1.20.1250.20 230 421 5.9E-22 T 13-10-2018 RAM_42820 22018a6229bcc95bbb58015bc8cc5158 424 Pfam PF07690 Major Facilitator Superfamily 8 381 3.7E-49 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_02950 a76b8a4d3280116aa67fac35e14cc125 293 Gene3D G3DSA:3.90.550.10 1 291 4.8E-73 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_02950 a76b8a4d3280116aa67fac35e14cc125 293 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 2 285 1.7E-133 T 13-10-2018 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|KEGG: 00525+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 RAM_02950 a76b8a4d3280116aa67fac35e14cc125 293 Pfam PF00483 Nucleotidyl transferase 2 237 2.8E-61 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 RAM_02950 a76b8a4d3280116aa67fac35e14cc125 293 SUPERFAMILY SSF53448 1 283 3.83E-81 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_25175 7255b97479625ecc268088aed5bf7816 314 Gene3D G3DSA:3.40.190.10 34 310 4.8E-63 T 13-10-2018 RAM_25175 7255b97479625ecc268088aed5bf7816 314 SUPERFAMILY SSF53850 28 310 1.26E-45 T 13-10-2018 RAM_25175 7255b97479625ecc268088aed5bf7816 314 Gene3D G3DSA:3.40.190.10 116 249 4.8E-63 T 13-10-2018 RAM_25175 7255b97479625ecc268088aed5bf7816 314 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 5 310 5.6E-54 T 13-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family RAM_25175 7255b97479625ecc268088aed5bf7816 314 Pfam PF16868 NMT1-like family 34 310 1.5E-43 T 13-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family RAM_12565 66ec30a917e30707c13cf9fc6cb6319e 300 Gene3D G3DSA:1.10.260.40 3 83 4.1E-8 T 13-10-2018 RAM_12565 66ec30a917e30707c13cf9fc6cb6319e 300 Pfam PF13560 Helix-turn-helix domain 13 74 7.2E-14 T 13-10-2018 RAM_12565 66ec30a917e30707c13cf9fc6cb6319e 300 SMART SM00530 17 72 7.1E-8 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_12565 66ec30a917e30707c13cf9fc6cb6319e 300 SUPERFAMILY SSF47413 11 67 7.7E-8 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_11330 95e20eaee38d165240e438abdd964a26 525 Gene3D G3DSA:1.20.58.100 410 508 3.0E-13 T 13-10-2018 RAM_11330 95e20eaee38d165240e438abdd964a26 525 SUPERFAMILY SSF56425 220 337 7.78E-31 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_11330 95e20eaee38d165240e438abdd964a26 525 Pfam PF00890 FAD binding domain 1 377 1.2E-82 T 13-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_11330 95e20eaee38d165240e438abdd964a26 525 Gene3D G3DSA:3.90.700.10 230 332 6.9E-130 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_11330 95e20eaee38d165240e438abdd964a26 525 TIGRFAM TIGR00551 nadB: L-aspartate oxidase 1 493 1.6E-151 T 13-10-2018 IPR005288 L-aspartate oxidase GO:0005737|GO:0008734|GO:0009435|GO:0055114 KEGG: 00250+1.4.3.16|KEGG: 00760+1.4.3.16|MetaCyc: PWY-5316|MetaCyc: PWY-7342 RAM_11330 95e20eaee38d165240e438abdd964a26 525 Pfam PF02910 Fumarate reductase flavoprotein C-term 419 505 1.7E-9 T 13-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_11330 95e20eaee38d165240e438abdd964a26 525 SUPERFAMILY SSF46977 415 511 1.96E-21 T 13-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_11330 95e20eaee38d165240e438abdd964a26 525 SUPERFAMILY SSF51905 1 393 1.12E-55 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_11330 95e20eaee38d165240e438abdd964a26 525 Gene3D G3DSA:3.50.50.60 1 387 6.9E-130 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_37230 0a828f5a43f90977925d9047b882ba71 323 SUPERFAMILY SSF56281 66 279 6.36E-38 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_37230 0a828f5a43f90977925d9047b882ba71 323 Gene3D G3DSA:3.60.15.10 64 307 1.5E-56 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_37230 0a828f5a43f90977925d9047b882ba71 323 SMART SM00849 84 265 1.0E-20 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_37230 0a828f5a43f90977925d9047b882ba71 323 Pfam PF00753 Metallo-beta-lactamase superfamily 85 205 9.7E-20 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_26125 5849f30a0f360856dccc165bdc196f89 371 SUPERFAMILY SSF51905 4 354 2.39E-45 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_26125 5849f30a0f360856dccc165bdc196f89 371 Gene3D G3DSA:3.50.50.60 1 361 1.4E-104 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_26125 5849f30a0f360856dccc165bdc196f89 371 Pfam PF01494 FAD binding domain 4 68 7.7E-5 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_26125 5849f30a0f360856dccc165bdc196f89 371 Pfam PF01494 FAD binding domain 125 339 7.1E-14 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_26125 5849f30a0f360856dccc165bdc196f89 371 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 293 309 4.0E-20 T 13-10-2018 RAM_26125 5849f30a0f360856dccc165bdc196f89 371 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 278 293 4.0E-20 T 13-10-2018 RAM_26125 5849f30a0f360856dccc165bdc196f89 371 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 4 26 4.0E-20 T 13-10-2018 RAM_26125 5849f30a0f360856dccc165bdc196f89 371 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 143 158 4.0E-20 T 13-10-2018 RAM_45240 fdb1c49dd7c2d7643d748e1552d3053d 660 Gene3D G3DSA:3.40.50.12780 58 524 3.0E-104 T 13-10-2018 RAM_45240 fdb1c49dd7c2d7643d748e1552d3053d 660 Pfam PF00501 AMP-binding enzyme 92 531 8.7E-92 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_45240 fdb1c49dd7c2d7643d748e1552d3053d 660 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 27 650 8.4E-288 T 13-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 RAM_45240 fdb1c49dd7c2d7643d748e1552d3053d 660 SUPERFAMILY SSF56801 29 649 5.1E-171 T 13-10-2018 RAM_45240 fdb1c49dd7c2d7643d748e1552d3053d 660 Pfam PF13193 AMP-binding enzyme C-terminal domain 540 619 1.3E-26 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_45240 fdb1c49dd7c2d7643d748e1552d3053d 660 Hamap MF_01123 Acetyl-coenzyme A synthetase [acs]. 13 653 50.319 T 13-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 RAM_45240 fdb1c49dd7c2d7643d748e1552d3053d 660 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 33 85 1.4E-22 T 13-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 RAM_45240 fdb1c49dd7c2d7643d748e1552d3053d 660 ProSitePatterns PS00455 Putative AMP-binding domain signature. 267 278 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_45240 fdb1c49dd7c2d7643d748e1552d3053d 660 Gene3D G3DSA:3.30.300.30 527 656 2.0E-29 T 13-10-2018 RAM_26010 bf026cf638ffbdce836d199d7f4e8b0e 857 Pfam PF00535 Glycosyl transferase family 2 445 593 8.3E-23 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RAM_26010 bf026cf638ffbdce836d199d7f4e8b0e 857 Gene3D G3DSA:3.90.550.10 439 679 7.4E-33 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_26010 bf026cf638ffbdce836d199d7f4e8b0e 857 Gene3D G3DSA:3.40.50.2000 225 412 1.9E-17 T 13-10-2018 RAM_26010 bf026cf638ffbdce836d199d7f4e8b0e 857 SUPERFAMILY SSF53756 10 429 6.67E-21 T 13-10-2018 RAM_26010 bf026cf638ffbdce836d199d7f4e8b0e 857 Pfam PF00534 Glycosyl transferases group 1 237 408 2.6E-9 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 RAM_26010 bf026cf638ffbdce836d199d7f4e8b0e 857 SUPERFAMILY SSF53448 434 674 2.44E-35 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_17125 df6d7a8b5233578994410a620095ff1b 2197 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 626 906 7.5E-76 T 13-10-2018 IPR020801 Polyketide synthase, acyl transferase domain RAM_17125 df6d7a8b5233578994410a620095ff1b 2197 Pfam PF00698 Acyl transferase domain 624 894 1.1E-68 T 13-10-2018 IPR014043 Acyl transferase RAM_17125 df6d7a8b5233578994410a620095ff1b 2197 SUPERFAMILY SSF55048 746 805 4.32E-9 T 13-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding RAM_17125 df6d7a8b5233578994410a620095ff1b 2197 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1722 1737 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_17125 df6d7a8b5233578994410a620095ff1b 2197 Gene3D G3DSA:3.30.70.250 745 806 5.4E-112 T 13-10-2018 RAM_17125 df6d7a8b5233578994410a620095ff1b 2197 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 1438 1610 4.1E-35 T 13-10-2018 RAM_17125 df6d7a8b5233578994410a620095ff1b 2197 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 86 329 4.1E-87 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal RAM_17125 df6d7a8b5233578994410a620095ff1b 2197 SUPERFAMILY SSF47336 1691 1772 7.98E-13 T 13-10-2018 IPR036736 ACP-like superfamily RAM_17125 df6d7a8b5233578994410a620095ff1b 2197 SUPERFAMILY SSF53474 1936 2193 7.1E-53 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_17125 df6d7a8b5233578994410a620095ff1b 2197 Pfam PF00550 Phosphopantetheine attachment site 17 69 6.8E-5 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_17125 df6d7a8b5233578994410a620095ff1b 2197 Pfam PF00550 Phosphopantetheine attachment site 1701 1763 1.6E-10 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_17125 df6d7a8b5233578994410a620095ff1b 2197 Pfam PF08659 KR domain 1438 1608 1.8E-50 T 13-10-2018 IPR013968 Polyketide synthase, ketoreductase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_17125 df6d7a8b5233578994410a620095ff1b 2197 SUPERFAMILY SSF53901 84 502 4.44E-100 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_17125 df6d7a8b5233578994410a620095ff1b 2197 Pfam PF14765 Polyketide synthase dehydratase 982 1231 3.1E-47 T 13-10-2018 IPR020807 Polyketide synthase, dehydratase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_17125 df6d7a8b5233578994410a620095ff1b 2197 SUPERFAMILY SSF51735 1436 1667 2.4E-36 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_17125 df6d7a8b5233578994410a620095ff1b 2197 Pfam PF00975 Thioesterase domain 1950 2181 2.0E-24 T 13-10-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 RAM_17125 df6d7a8b5233578994410a620095ff1b 2197 Gene3D G3DSA:1.10.1200.10 1 73 2.7E-14 T 13-10-2018 IPR036736 ACP-like superfamily RAM_17125 df6d7a8b5233578994410a620095ff1b 2197 SUPERFAMILY SSF47336 1860 1927 9.71E-6 T 13-10-2018 IPR036736 ACP-like superfamily RAM_17125 df6d7a8b5233578994410a620095ff1b 2197 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 243 259 - T 13-10-2018 IPR018201 Beta-ketoacyl synthase, active site RAM_17125 df6d7a8b5233578994410a620095ff1b 2197 Gene3D G3DSA:3.40.50.1820 1938 2197 1.7E-54 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_17125 df6d7a8b5233578994410a620095ff1b 2197 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 338 455 2.0E-44 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal RAM_17125 df6d7a8b5233578994410a620095ff1b 2197 Gene3D G3DSA:3.40.50.720 1229 1680 6.2E-97 T 13-10-2018 RAM_17125 df6d7a8b5233578994410a620095ff1b 2197 SUPERFAMILY SSF52151 623 893 1.28E-52 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RAM_17125 df6d7a8b5233578994410a620095ff1b 2197 Gene3D G3DSA:1.10.1200.10 1856 1933 7.6E-9 T 13-10-2018 IPR036736 ACP-like superfamily RAM_17125 df6d7a8b5233578994410a620095ff1b 2197 Gene3D G3DSA:1.10.1200.10 1688 1768 6.8E-14 T 13-10-2018 IPR036736 ACP-like superfamily RAM_17125 df6d7a8b5233578994410a620095ff1b 2197 Gene3D G3DSA:3.40.366.20 524 924 5.4E-112 T 13-10-2018 RAM_17125 df6d7a8b5233578994410a620095ff1b 2197 Gene3D G3DSA:3.10.129.110 981 1228 2.4E-53 T 13-10-2018 RAM_17125 df6d7a8b5233578994410a620095ff1b 2197 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 458 570 5.1E-20 T 13-10-2018 IPR032821 Ketoacyl-synthetase, C-terminal extension Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_17125 df6d7a8b5233578994410a620095ff1b 2197 SUPERFAMILY SSF51735 1232 1426 2.4E-24 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_17125 df6d7a8b5233578994410a620095ff1b 2197 SUPERFAMILY SSF47336 17 101 1.83E-10 T 13-10-2018 IPR036736 ACP-like superfamily RAM_17125 df6d7a8b5233578994410a620095ff1b 2197 Gene3D G3DSA:3.40.47.10 81 523 1.9E-188 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_17125 df6d7a8b5233578994410a620095ff1b 2197 SMART SM00825 Beta-ketoacyl synthase 88 506 6.9E-212 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RAM_17125 df6d7a8b5233578994410a620095ff1b 2197 SMART SM00823 Phosphopantetheine attachment site 1698 1767 7.0E-11 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_17125 df6d7a8b5233578994410a620095ff1b 2197 SMART SM00823 Phosphopantetheine attachment site 6 73 7.5E-5 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_17125 df6d7a8b5233578994410a620095ff1b 2197 SMART SM00826 982 1121 2.5E-36 T 13-10-2018 IPR020807 Polyketide synthase, dehydratase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_04280 af2ff54ddf8618874c1b317d8c07c3d1 278 SUPERFAMILY SSF56219 5 267 1.57E-68 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily RAM_04280 af2ff54ddf8618874c1b317d8c07c3d1 278 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 8 265 9.4E-65 T 13-10-2018 RAM_04280 af2ff54ddf8618874c1b317d8c07c3d1 278 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 7 266 1.2E-66 T 13-10-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 RAM_04280 af2ff54ddf8618874c1b317d8c07c3d1 278 Gene3D G3DSA:3.60.10.10 4 270 1.9E-73 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily RAM_04280 af2ff54ddf8618874c1b317d8c07c3d1 278 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 9 259 2.8E-17 T 13-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF47336 1005 1077 9.16E-18 T 13-10-2018 IPR036736 ACP-like superfamily RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF47336 3568 3636 4.58E-18 T 13-10-2018 IPR036736 ACP-like superfamily RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF52777 228 491 3.67E-59 T 13-10-2018 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF52777 1088 1265 3.48E-38 T 13-10-2018 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF00550 Phosphopantetheine attachment site 1015 1076 3.3E-12 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF00550 Phosphopantetheine attachment site 5060 5123 8.1E-16 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF00550 Phosphopantetheine attachment site 2541 2604 1.9E-15 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF00550 Phosphopantetheine attachment site 6117 6176 3.5E-12 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF00550 Phosphopantetheine attachment site 3577 3636 4.7E-13 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1037 1052 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF56801 2004 2552 2.49E-158 T 13-10-2018 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:3.30.559.30 225 470 9.5E-145 T 13-10-2018 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF00668 Condensation domain 6194 6641 2.5E-68 T 13-10-2018 IPR001242 Condensation domain RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF00668 Condensation domain 4095 4536 2.2E-80 T 13-10-2018 IPR001242 Condensation domain RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF00668 Condensation domain 1598 2024 2.3E-78 T 13-10-2018 IPR001242 Condensation domain RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF00668 Condensation domain 3654 4074 1.2E-64 T 13-10-2018 IPR001242 Condensation domain RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF00668 Condensation domain 40 484 6.1E-106 T 13-10-2018 IPR001242 Condensation domain RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF00668 Condensation domain 2624 3064 1.3E-101 T 13-10-2018 IPR001242 Condensation domain RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF00668 Condensation domain 1093 1538 1.5E-61 T 13-10-2018 IPR001242 Condensation domain RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF00668 Condensation domain 5141 5576 4.0E-101 T 13-10-2018 IPR001242 Condensation domain RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:3.30.559.10 1565 1955 9.3E-127 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:3.30.559.30 1765 2019 9.3E-127 T 13-10-2018 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:3.30.559.10 44 414 9.5E-145 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF52777 38 241 3.45E-51 T 13-10-2018 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 ProSitePatterns PS00012 Phosphopantetheine attachment site. 6139 6154 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF52777 1559 1779 1.33E-38 T 13-10-2018 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF52777 6190 6369 1.22E-37 T 13-10-2018 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:3.30.559.30 5319 5564 6.9E-153 T 13-10-2018 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:1.10.1200.10 6108 6178 9.5E-25 T 13-10-2018 IPR036736 ACP-like superfamily RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:3.30.559.30 3812 4065 9.1E-80 T 13-10-2018 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:3.30.559.30 6365 6641 8.1E-79 T 13-10-2018 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:3.30.559.30 1261 1529 9.3E-81 T 13-10-2018 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 ProSitePatterns PS00455 Putative AMP-binding domain signature. 2163 2174 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF56801 4517 5071 1.44E-150 T 13-10-2018 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF47336 2532 2637 8.64E-21 T 13-10-2018 IPR036736 ACP-like superfamily RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF47336 6108 6176 1.44E-18 T 13-10-2018 IPR036736 ACP-like superfamily RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF52777 2811 3073 3.93E-64 T 13-10-2018 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:1.10.1200.10 3565 3643 1.6E-24 T 13-10-2018 IPR036736 ACP-like superfamily RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 5618 6027 6.3E-131 T 13-10-2018 IPR010071 Amino acid adenylation domain RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 525 927 9.2E-116 T 13-10-2018 IPR010071 Amino acid adenylation domain RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 3107 3490 1.9E-115 T 13-10-2018 IPR010071 Amino acid adenylation domain RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 2061 2452 1.3E-127 T 13-10-2018 IPR010071 Amino acid adenylation domain RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 4578 4972 2.0E-127 T 13-10-2018 IPR010071 Amino acid adenylation domain RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 ProSitePatterns PS00012 Phosphopantetheine attachment site. 3599 3614 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:1.10.1200.10 1003 1081 3.2E-23 T 13-10-2018 IPR036736 ACP-like superfamily RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 ProSitePatterns PS00012 Phosphopantetheine attachment site. 5082 5097 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF47336 5051 5123 6.02E-19 T 13-10-2018 IPR036736 ACP-like superfamily RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF56801 5557 6128 4.32E-159 T 13-10-2018 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:3.30.559.30 2807 3052 1.2E-153 T 13-10-2018 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 TIGRFAM TIGR01720 NRPS-para261: non-ribosomal peptide synthase domain TIGR01720 3945 4087 5.3E-31 T 13-10-2018 IPR010060 Non-ribosomal peptide synthase RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 TIGRFAM TIGR01720 NRPS-para261: non-ribosomal peptide synthase domain TIGR01720 6505 6640 1.2E-25 T 13-10-2018 IPR010060 Non-ribosomal peptide synthase RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 TIGRFAM TIGR01720 NRPS-para261: non-ribosomal peptide synthase domain TIGR01720 1398 1552 3.6E-38 T 13-10-2018 IPR010060 Non-ribosomal peptide synthase RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:3.40.50.12780 491 897 1.5E-123 T 13-10-2018 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:3.40.50.12780 5586 5998 5.3E-136 T 13-10-2018 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:3.40.50.12780 3075 3460 8.9E-129 T 13-10-2018 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:3.40.50.12780 4546 4941 2.0E-135 T 13-10-2018 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:3.40.50.12780 2026 2422 1.8E-142 T 13-10-2018 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF52777 4280 4525 1.48E-56 T 13-10-2018 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF56801 464 1025 1.83E-148 T 13-10-2018 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:3.30.559.10 5144 5508 6.9E-153 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:3.30.559.10 2626 2996 1.2E-153 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF56801 3045 3588 3.79E-151 T 13-10-2018 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF52777 3824 4064 2.0E-44 T 13-10-2018 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF52777 3652 3837 2.22E-41 T 13-10-2018 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 SMART SM01294 2540 2604 1.0E-4 T 13-10-2018 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 ProSitePatterns PS00455 Putative AMP-binding domain signature. 4694 4705 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF52777 6381 6638 4.78E-41 T 13-10-2018 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 ProSitePatterns PS00455 Putative AMP-binding domain signature. 5757 5768 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF52777 1277 1528 6.56E-43 T 13-10-2018 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF52777 5323 5586 6.34E-64 T 13-10-2018 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:3.30.559.30 4280 4534 1.9E-135 T 13-10-2018 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF00501 AMP-binding enzyme 5600 6004 7.6E-100 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF00501 AMP-binding enzyme 2040 2428 8.4E-93 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF00501 AMP-binding enzyme 4557 4948 6.1E-97 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF00501 AMP-binding enzyme 3086 3466 3.2E-90 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF00501 AMP-binding enzyme 504 903 3.9E-89 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF13193 AMP-binding enzyme C-terminal domain 4956 5031 1.9E-13 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF13193 AMP-binding enzyme C-terminal domain 911 986 3.4E-12 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF13193 AMP-binding enzyme C-terminal domain 6012 6088 5.7E-8 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF13193 AMP-binding enzyme C-terminal domain 2436 2512 9.6E-15 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF13193 AMP-binding enzyme C-terminal domain 3474 3548 3.9E-11 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF52777 4101 4278 1.22E-41 T 13-10-2018 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 ProSitePatterns PS00455 Putative AMP-binding domain signature. 649 660 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:3.30.300.30 4942 5045 1.6E-33 T 13-10-2018 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:1.10.1200.10 5046 5129 3.4E-26 T 13-10-2018 IPR036736 ACP-like superfamily RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:1.10.1200.10 2525 2611 1.4E-25 T 13-10-2018 IPR036736 ACP-like superfamily RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:3.30.559.10 4101 4469 1.9E-135 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF52777 5138 5335 4.56E-51 T 13-10-2018 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:3.30.300.30 898 1002 2.1E-35 T 13-10-2018 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:3.30.300.30 2423 2524 1.2E-36 T 13-10-2018 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:3.30.300.30 3461 3562 3.5E-35 T 13-10-2018 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:3.30.300.30 5999 6104 6.4E-31 T 13-10-2018 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF52777 1765 2015 3.78E-54 T 13-10-2018 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:3.30.559.10 1082 1259 4.3E-48 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:3.30.559.10 6181 6364 1.3E-54 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:3.30.559.10 3644 3809 1.9E-45 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF52777 2627 2803 7.56E-49 T 13-10-2018 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 SMART SM00823 Phosphopantetheine attachment site 3575 3643 6.9E-7 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 SMART SM00823 Phosphopantetheine attachment site 1013 1081 0.0048 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 SMART SM00823 Phosphopantetheine attachment site 2536 2608 2.7E-12 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 SMART SM00823 Phosphopantetheine attachment site 6115 6183 1.8E-4 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_15790 867ac20eb5f13fcc190e094fdce177dc 6646 SMART SM00823 Phosphopantetheine attachment site 5058 5127 5.2E-10 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_33980 31aa719eb3c1fdec884c139848e46ac2 447 SUPERFAMILY SSF54631 185 322 1.26E-32 T 13-10-2018 RAM_33980 31aa719eb3c1fdec884c139848e46ac2 447 Pfam PF01595 Domain of unknown function DUF21 6 183 5.5E-34 T 13-10-2018 IPR002550 CNNM, transmembrane domain RAM_33980 31aa719eb3c1fdec884c139848e46ac2 447 Gene3D G3DSA:3.10.580.10 177 326 6.3E-54 T 13-10-2018 RAM_33980 31aa719eb3c1fdec884c139848e46ac2 447 Pfam PF03471 Transporter associated domain 336 412 3.7E-12 T 13-10-2018 IPR005170 Transporter-associated domain RAM_33980 31aa719eb3c1fdec884c139848e46ac2 447 SUPERFAMILY SSF56176 330 413 2.73E-14 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RAM_33980 31aa719eb3c1fdec884c139848e46ac2 447 Pfam PF00571 CBS domain 266 319 5.6E-5 T 13-10-2018 IPR000644 CBS domain RAM_33980 31aa719eb3c1fdec884c139848e46ac2 447 Pfam PF00571 CBS domain 200 252 1.7E-5 T 13-10-2018 IPR000644 CBS domain RAM_33980 31aa719eb3c1fdec884c139848e46ac2 447 Gene3D G3DSA:3.30.465.10 327 414 1.8E-18 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 RAM_33980 31aa719eb3c1fdec884c139848e46ac2 447 SMART SM01091 335 417 1.5E-18 T 13-10-2018 IPR005170 Transporter-associated domain RAM_30750 deb8a04cfece062a7558b410ccb0663a 1298 SMART SM00823 Phosphopantetheine attachment site 518 586 4.5E-4 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_30750 deb8a04cfece062a7558b410ccb0663a 1298 SUPERFAMILY SSF51161 875 1057 2.63E-9 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily RAM_30750 deb8a04cfece062a7558b410ccb0663a 1298 SUPERFAMILY SSF47336 514 582 2.88E-13 T 13-10-2018 IPR036736 ACP-like superfamily RAM_30750 deb8a04cfece062a7558b410ccb0663a 1298 SUPERFAMILY SSF51161 718 818 1.21E-21 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily RAM_30750 deb8a04cfece062a7558b410ccb0663a 1298 Pfam PF13193 AMP-binding enzyme C-terminal domain 423 496 2.8E-5 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_30750 deb8a04cfece062a7558b410ccb0663a 1298 Pfam PF00550 Phosphopantetheine attachment site 520 582 3.5E-10 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_30750 deb8a04cfece062a7558b410ccb0663a 1298 SUPERFAMILY SSF56801 34 531 2.22E-107 T 13-10-2018 RAM_30750 deb8a04cfece062a7558b410ccb0663a 1298 Gene3D G3DSA:3.30.300.30 409 511 4.7E-22 T 13-10-2018 RAM_30750 deb8a04cfece062a7558b410ccb0663a 1298 TIGRFAM TIGR02353 NRPS_term_dom: non-ribosomal peptide synthetase terminal domain of unknown function 604 1292 3.8E-215 T 13-10-2018 IPR012728 Non-ribosomal peptide synthetase, C-terminal RAM_30750 deb8a04cfece062a7558b410ccb0663a 1298 Pfam PF00501 AMP-binding enzyme 159 414 2.3E-49 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_30750 deb8a04cfece062a7558b410ccb0663a 1298 Pfam PF00501 AMP-binding enzyme 46 146 4.4E-16 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_30750 deb8a04cfece062a7558b410ccb0663a 1298 ProSitePatterns PS00455 Putative AMP-binding domain signature. 167 178 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_30750 deb8a04cfece062a7558b410ccb0663a 1298 Gene3D G3DSA:3.40.50.1820 512 644 6.2E-17 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_30750 deb8a04cfece062a7558b410ccb0663a 1298 Gene3D G3DSA:3.40.50.12780 34 408 1.9E-91 T 13-10-2018 RAM_30750 deb8a04cfece062a7558b410ccb0663a 1298 Gene3D G3DSA:2.160.10.10 703 827 5.4E-17 T 13-10-2018 RAM_30750 deb8a04cfece062a7558b410ccb0663a 1298 Gene3D G3DSA:2.160.10.10 1190 1296 1.3E-12 T 13-10-2018 RAM_30750 deb8a04cfece062a7558b410ccb0663a 1298 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 776 804 - T 13-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 RAM_30750 deb8a04cfece062a7558b410ccb0663a 1298 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 768 800 1.1E-5 T 13-10-2018 IPR001451 Hexapeptide repeat RAM_30750 deb8a04cfece062a7558b410ccb0663a 1298 SUPERFAMILY SSF51161 1188 1292 3.05E-18 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily RAM_30750 deb8a04cfece062a7558b410ccb0663a 1298 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 65 438 1.1E-95 T 13-10-2018 IPR010071 Amino acid adenylation domain RAM_10025 05d0f41897ed334e764fa46f88b23751 185 Gene3D G3DSA:3.30.1360.40 31 105 2.1E-67 T 13-10-2018 RAM_10025 05d0f41897ed334e764fa46f88b23751 185 Gene3D G3DSA:1.10.132.20 12 182 2.1E-67 T 13-10-2018 RAM_10025 05d0f41897ed334e764fa46f88b23751 185 Pfam PF01765 Ribosome recycling factor 21 183 3.9E-63 T 13-10-2018 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 RAM_10025 05d0f41897ed334e764fa46f88b23751 185 Hamap MF_00040 Ribosome-recycling factor [frr]. 3 185 27.108 T 13-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 RAM_10025 05d0f41897ed334e764fa46f88b23751 185 TIGRFAM TIGR00496 frr: ribosome recycling factor 10 185 1.3E-65 T 13-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 RAM_10025 05d0f41897ed334e764fa46f88b23751 185 SUPERFAMILY SSF55194 3 184 3.66E-70 T 13-10-2018 IPR036191 RRF superfamily Reactome: R-HSA-5419276 RAM_14165 ebdb1d16178321c6bcfd26ff5f80b02e 877 SUPERFAMILY SSF49265 188 370 9.79E-30 T 13-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 RAM_14165 ebdb1d16178321c6bcfd26ff5f80b02e 877 SUPERFAMILY SSF50952 391 689 3.14E-30 T 13-10-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 RAM_14165 ebdb1d16178321c6bcfd26ff5f80b02e 877 SMART SM00060 285 359 5.5E-12 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 RAM_14165 ebdb1d16178321c6bcfd26ff5f80b02e 877 SMART SM00060 190 265 7.2E-11 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 RAM_14165 ebdb1d16178321c6bcfd26ff5f80b02e 877 Pfam PF03422 Carbohydrate binding module (family 6) 71 170 3.3E-12 T 13-10-2018 IPR005084 Carbohydrate binding module family 6 GO:0030246 RAM_14165 ebdb1d16178321c6bcfd26ff5f80b02e 877 Gene3D G3DSA:2.60.40.10 279 362 2.4E-13 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_14165 ebdb1d16178321c6bcfd26ff5f80b02e 877 Gene3D G3DSA:2.120.10.30 363 708 5.5E-106 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RAM_14165 ebdb1d16178321c6bcfd26ff5f80b02e 877 SUPERFAMILY SSF49785 59 177 6.68E-25 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_14165 ebdb1d16178321c6bcfd26ff5f80b02e 877 Gene3D G3DSA:3.90.280.10 711 874 1.9E-32 T 13-10-2018 IPR036610 PEBP-like superfamily RAM_14165 ebdb1d16178321c6bcfd26ff5f80b02e 877 SMART SM00606 48 183 0.0092 T 13-10-2018 IPR006584 Cellulose binding, type IV GO:0030246 RAM_14165 ebdb1d16178321c6bcfd26ff5f80b02e 877 Gene3D G3DSA:2.60.40.10 188 276 5.8E-21 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_14165 ebdb1d16178321c6bcfd26ff5f80b02e 877 Pfam PF00041 Fibronectin type III domain 192 264 1.6E-9 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 RAM_14165 ebdb1d16178321c6bcfd26ff5f80b02e 877 Pfam PF00041 Fibronectin type III domain 287 357 4.6E-10 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 RAM_14165 ebdb1d16178321c6bcfd26ff5f80b02e 877 Pfam PF01161 Phosphatidylethanolamine-binding protein 730 871 4.6E-21 T 13-10-2018 IPR008914 Phosphatidylethanolamine-binding protein RAM_14165 ebdb1d16178321c6bcfd26ff5f80b02e 877 Pfam PF07995 Glucose / Sorbosone dehydrogenase 392 690 9.4E-72 T 13-10-2018 IPR012938 Glucose/Sorbosone dehydrogenase RAM_14165 ebdb1d16178321c6bcfd26ff5f80b02e 877 SUPERFAMILY SSF49777 717 869 6.41E-23 T 13-10-2018 IPR036610 PEBP-like superfamily RAM_14165 ebdb1d16178321c6bcfd26ff5f80b02e 877 Gene3D G3DSA:2.60.120.260 54 184 4.4E-39 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_47840 c231484715603a107b426f8976f107d5 946 Gene3D G3DSA:3.10.20.590 887 946 6.6E-20 T 13-10-2018 RAM_47840 c231484715603a107b426f8976f107d5 946 PRINTS PR00985 Leucyl-tRNA synthetase signature 285 304 4.5E-54 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 RAM_47840 c231484715603a107b426f8976f107d5 946 PRINTS PR00985 Leucyl-tRNA synthetase signature 256 269 4.5E-54 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 RAM_47840 c231484715603a107b426f8976f107d5 946 PRINTS PR00985 Leucyl-tRNA synthetase signature 223 239 4.5E-54 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 RAM_47840 c231484715603a107b426f8976f107d5 946 PRINTS PR00985 Leucyl-tRNA synthetase signature 580 598 4.5E-54 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 RAM_47840 c231484715603a107b426f8976f107d5 946 PRINTS PR00985 Leucyl-tRNA synthetase signature 150 167 4.5E-54 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 RAM_47840 c231484715603a107b426f8976f107d5 946 PRINTS PR00985 Leucyl-tRNA synthetase signature 632 654 4.5E-54 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 RAM_47840 c231484715603a107b426f8976f107d5 946 PRINTS PR00985 Leucyl-tRNA synthetase signature 665 675 4.5E-54 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 RAM_47840 c231484715603a107b426f8976f107d5 946 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 16 946 21.407 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 RAM_47840 c231484715603a107b426f8976f107d5 946 SUPERFAMILY SSF47323 758 945 4.67E-34 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 RAM_47840 c231484715603a107b426f8976f107d5 946 Pfam PF08264 Anticodon-binding domain of tRNA 795 910 4.7E-15 T 13-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 RAM_47840 c231484715603a107b426f8976f107d5 946 Pfam PF09334 tRNA synthetases class I (M) 62 166 5.9E-13 T 13-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 RAM_47840 c231484715603a107b426f8976f107d5 946 SUPERFAMILY SSF50677 296 495 1.03E-46 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 RAM_47840 c231484715603a107b426f8976f107d5 946 SUPERFAMILY SSF52374 21 763 1.15E-111 T 13-10-2018 RAM_47840 c231484715603a107b426f8976f107d5 946 Gene3D G3DSA:1.10.730.10 725 878 1.0E-197 T 13-10-2018 RAM_47840 c231484715603a107b426f8976f107d5 946 Gene3D G3DSA:3.10.330.110 675 724 1.0E-197 T 13-10-2018 RAM_47840 c231484715603a107b426f8976f107d5 946 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 291 483 2.0E-59 T 13-10-2018 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 RAM_47840 c231484715603a107b426f8976f107d5 946 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 217 946 1.2E-219 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 RAM_47840 c231484715603a107b426f8976f107d5 946 Gene3D G3DSA:3.90.740.10 297 494 1.0E-197 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 RAM_47840 c231484715603a107b426f8976f107d5 946 Gene3D G3DSA:3.40.50.620 54 177 9.4E-41 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAM_47840 c231484715603a107b426f8976f107d5 946 Gene3D G3DSA:3.40.50.620 216 674 1.0E-197 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAM_40640 24f010ccddfde7a997208c143f0941ce 305 Gene3D G3DSA:3.30.420.10 155 300 9.3E-7 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RAM_40640 24f010ccddfde7a997208c143f0941ce 305 Pfam PF00665 Integrase core domain 145 256 1.3E-20 T 13-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RAM_40640 24f010ccddfde7a997208c143f0941ce 305 SUPERFAMILY SSF53098 136 299 4.4E-32 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily RAM_40640 24f010ccddfde7a997208c143f0941ce 305 Pfam PF13276 HTH-like domain 60 114 1.8E-12 T 13-10-2018 IPR025948 HTH-like domain RAM_40140 24f010ccddfde7a997208c143f0941ce 305 Gene3D G3DSA:3.30.420.10 155 300 9.3E-7 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RAM_40140 24f010ccddfde7a997208c143f0941ce 305 Pfam PF00665 Integrase core domain 145 256 1.3E-20 T 13-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RAM_40140 24f010ccddfde7a997208c143f0941ce 305 SUPERFAMILY SSF53098 136 299 4.4E-32 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily RAM_40140 24f010ccddfde7a997208c143f0941ce 305 Pfam PF13276 HTH-like domain 60 114 1.8E-12 T 13-10-2018 IPR025948 HTH-like domain RAM_07315 24f010ccddfde7a997208c143f0941ce 305 Gene3D G3DSA:3.30.420.10 155 300 9.3E-7 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RAM_07315 24f010ccddfde7a997208c143f0941ce 305 Pfam PF00665 Integrase core domain 145 256 1.3E-20 T 13-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RAM_07315 24f010ccddfde7a997208c143f0941ce 305 SUPERFAMILY SSF53098 136 299 4.4E-32 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily RAM_07315 24f010ccddfde7a997208c143f0941ce 305 Pfam PF13276 HTH-like domain 60 114 1.8E-12 T 13-10-2018 IPR025948 HTH-like domain RAM_07365 24f010ccddfde7a997208c143f0941ce 305 Gene3D G3DSA:3.30.420.10 155 300 9.3E-7 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RAM_07365 24f010ccddfde7a997208c143f0941ce 305 Pfam PF00665 Integrase core domain 145 256 1.3E-20 T 13-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RAM_07365 24f010ccddfde7a997208c143f0941ce 305 SUPERFAMILY SSF53098 136 299 4.4E-32 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily RAM_07365 24f010ccddfde7a997208c143f0941ce 305 Pfam PF13276 HTH-like domain 60 114 1.8E-12 T 13-10-2018 IPR025948 HTH-like domain RAM_37650 24f010ccddfde7a997208c143f0941ce 305 Gene3D G3DSA:3.30.420.10 155 300 9.3E-7 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RAM_37650 24f010ccddfde7a997208c143f0941ce 305 Pfam PF00665 Integrase core domain 145 256 1.3E-20 T 13-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RAM_37650 24f010ccddfde7a997208c143f0941ce 305 SUPERFAMILY SSF53098 136 299 4.4E-32 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily RAM_37650 24f010ccddfde7a997208c143f0941ce 305 Pfam PF13276 HTH-like domain 60 114 1.8E-12 T 13-10-2018 IPR025948 HTH-like domain RAM_29805 24f010ccddfde7a997208c143f0941ce 305 Gene3D G3DSA:3.30.420.10 155 300 9.3E-7 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RAM_29805 24f010ccddfde7a997208c143f0941ce 305 Pfam PF00665 Integrase core domain 145 256 1.3E-20 T 13-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RAM_29805 24f010ccddfde7a997208c143f0941ce 305 SUPERFAMILY SSF53098 136 299 4.4E-32 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily RAM_29805 24f010ccddfde7a997208c143f0941ce 305 Pfam PF13276 HTH-like domain 60 114 1.8E-12 T 13-10-2018 IPR025948 HTH-like domain RAM_28135 24f010ccddfde7a997208c143f0941ce 305 Gene3D G3DSA:3.30.420.10 155 300 9.3E-7 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RAM_28135 24f010ccddfde7a997208c143f0941ce 305 Pfam PF00665 Integrase core domain 145 256 1.3E-20 T 13-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RAM_28135 24f010ccddfde7a997208c143f0941ce 305 SUPERFAMILY SSF53098 136 299 4.4E-32 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily RAM_28135 24f010ccddfde7a997208c143f0941ce 305 Pfam PF13276 HTH-like domain 60 114 1.8E-12 T 13-10-2018 IPR025948 HTH-like domain RAM_28720 55ca0b321f28a9b4a19d28200c73253a 435 Pfam PF00553 Cellulose binding domain 337 423 2.6E-18 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_28720 55ca0b321f28a9b4a19d28200c73253a 435 ProSitePatterns PS00109 Tyrosine protein kinases specific active-site signature. 129 141 - T 13-10-2018 IPR008266 Tyrosine-protein kinase, active site GO:0004672|GO:0006468 RAM_28720 55ca0b321f28a9b4a19d28200c73253a 435 SMART SM00637 337 432 8.8E-20 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_28720 55ca0b321f28a9b4a19d28200c73253a 435 Gene3D G3DSA:3.30.200.20 2 90 8.4E-23 T 13-10-2018 RAM_28720 55ca0b321f28a9b4a19d28200c73253a 435 SUPERFAMILY SSF56112 22 263 1.07E-61 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_28720 55ca0b321f28a9b4a19d28200c73253a 435 Gene3D G3DSA:1.10.510.10 93 277 3.4E-41 T 13-10-2018 RAM_28720 55ca0b321f28a9b4a19d28200c73253a 435 Gene3D G3DSA:2.60.40.290 331 433 1.8E-20 T 13-10-2018 IPR012291 CBM2, carbohydrate-binding domain superfamily GO:0004553|GO:0030247 RAM_28720 55ca0b321f28a9b4a19d28200c73253a 435 Pfam PF00069 Protein kinase domain 23 255 4.3E-41 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_28720 55ca0b321f28a9b4a19d28200c73253a 435 PIRSF PIRSF000654 23 266 8.2E-19 T 13-10-2018 RAM_28720 55ca0b321f28a9b4a19d28200c73253a 435 SUPERFAMILY SSF49384 332 425 7.67E-22 T 13-10-2018 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily GO:0030246 RAM_41160 ecb796c26aeb90028879de7a3ce6293e 975 Gene3D G3DSA:1.10.10.10 1 92 6.5E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_41160 ecb796c26aeb90028879de7a3ce6293e 975 Gene3D G3DSA:3.40.50.300 252 401 8.6E-28 T 13-10-2018 RAM_41160 ecb796c26aeb90028879de7a3ce6293e 975 SUPERFAMILY SSF48452 843 966 1.08E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_41160 ecb796c26aeb90028879de7a3ce6293e 975 Pfam PF00931 NB-ARC domain 281 509 2.9E-13 T 13-10-2018 IPR002182 NB-ARC GO:0043531 Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-6798695|Reactome: R-HSA-6803207|Reactome: R-HSA-8953750 RAM_41160 ecb796c26aeb90028879de7a3ce6293e 975 SUPERFAMILY SSF48452 91 256 3.41E-32 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_41160 ecb796c26aeb90028879de7a3ce6293e 975 SMART SM00862 17 89 6.0E-9 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_41160 ecb796c26aeb90028879de7a3ce6293e 975 Gene3D G3DSA:1.25.40.10 799 955 1.7E-10 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_41160 ecb796c26aeb90028879de7a3ce6293e 975 Gene3D G3DSA:1.25.40.10 649 798 7.3E-10 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_41160 ecb796c26aeb90028879de7a3ce6293e 975 Gene3D G3DSA:1.25.40.10 94 250 1.7E-46 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_41160 ecb796c26aeb90028879de7a3ce6293e 975 PRINTS PR00364 Disease resistance protein signature 357 371 2.2E-9 T 13-10-2018 RAM_41160 ecb796c26aeb90028879de7a3ce6293e 975 PRINTS PR00364 Disease resistance protein signature 441 455 2.2E-9 T 13-10-2018 RAM_41160 ecb796c26aeb90028879de7a3ce6293e 975 PRINTS PR00364 Disease resistance protein signature 285 300 2.2E-9 T 13-10-2018 RAM_41160 ecb796c26aeb90028879de7a3ce6293e 975 SUPERFAMILY SSF52540 249 509 2.74E-29 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_41160 ecb796c26aeb90028879de7a3ce6293e 975 SMART SM01043 96 237 4.5E-48 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_41160 ecb796c26aeb90028879de7a3ce6293e 975 SUPERFAMILY SSF46894 3 89 1.53E-12 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_41160 ecb796c26aeb90028879de7a3ce6293e 975 Pfam PF03704 Bacterial transcriptional activator domain 96 237 1.7E-39 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_41160 ecb796c26aeb90028879de7a3ce6293e 975 SUPERFAMILY SSF48452 647 834 1.47E-11 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_41160 ecb796c26aeb90028879de7a3ce6293e 975 Pfam PF00486 Transcriptional regulatory protein, C terminal 25 77 4.1E-7 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_24085 9c67975ff6d1630ca113767f1360bbbb 255 SUPERFAMILY SSF53448 14 233 4.13E-44 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_24085 9c67975ff6d1630ca113767f1360bbbb 255 Pfam PF00535 Glycosyl transferase family 2 16 180 1.9E-30 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RAM_24085 9c67975ff6d1630ca113767f1360bbbb 255 Gene3D G3DSA:3.90.550.10 3 253 8.6E-48 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_00415 38604fde3466d08fa0bd99eae012849a 431 Gene3D G3DSA:3.30.70.2520 299 391 2.1E-24 T 13-10-2018 RAM_00415 38604fde3466d08fa0bd99eae012849a 431 SUPERFAMILY SSF56176 2 180 4.07E-47 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RAM_00415 38604fde3466d08fa0bd99eae012849a 431 Pfam PF01565 FAD binding domain 15 150 3.6E-26 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RAM_00415 38604fde3466d08fa0bd99eae012849a 431 Gene3D G3DSA:1.10.45.10 392 429 3.3E-10 T 13-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 RAM_00415 38604fde3466d08fa0bd99eae012849a 431 PIRSF PIRSF000136 1 431 2.3E-117 T 13-10-2018 IPR010031 L-gulonolactone/D-arabinono-1,4-lactone oxidase GO:0016899|GO:0055114 RAM_00415 38604fde3466d08fa0bd99eae012849a 431 Gene3D G3DSA:3.30.43.10 1 66 1.8E-17 T 13-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 RAM_00415 38604fde3466d08fa0bd99eae012849a 431 TIGRFAM TIGR01679 bact_FAD_ox: FAD-linked oxidoreductase 4 429 1.6E-120 T 13-10-2018 RAM_00415 38604fde3466d08fa0bd99eae012849a 431 ProSitePatterns PS00862 Oxygen oxidoreductases covalent FAD-binding site. 15 48 - T 13-10-2018 IPR006093 Oxygen oxidoreductase covalent FAD-binding site GO:0016491|GO:0055114 RAM_00415 38604fde3466d08fa0bd99eae012849a 431 Pfam PF04030 D-arabinono-1,4-lactone oxidase 174 427 6.1E-75 T 13-10-2018 IPR007173 D-arabinono-1,4-lactone oxidase GO:0003885|GO:0016020|GO:0055114 RAM_00415 38604fde3466d08fa0bd99eae012849a 431 Gene3D G3DSA:3.30.465.10 69 191 2.1E-40 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 RAM_09515 2fdb27d996373ed6ed763dcb1a19bcbe 355 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 172 190 5.4E-10 T 13-10-2018 RAM_09515 2fdb27d996373ed6ed763dcb1a19bcbe 355 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 281 297 5.4E-10 T 13-10-2018 RAM_09515 2fdb27d996373ed6ed763dcb1a19bcbe 355 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 10 29 5.4E-10 T 13-10-2018 RAM_09515 2fdb27d996373ed6ed763dcb1a19bcbe 355 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 129 137 6.4E-16 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAM_09515 2fdb27d996373ed6ed763dcb1a19bcbe 355 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 168 192 6.4E-16 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAM_09515 2fdb27d996373ed6ed763dcb1a19bcbe 355 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 9 31 6.4E-16 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAM_09515 2fdb27d996373ed6ed763dcb1a19bcbe 355 SUPERFAMILY SSF51905 9 351 1.88E-38 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_09515 2fdb27d996373ed6ed763dcb1a19bcbe 355 Gene3D G3DSA:3.50.50.60 2 354 1.9E-107 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_09515 2fdb27d996373ed6ed763dcb1a19bcbe 355 Pfam PF13738 Pyridine nucleotide-disulphide oxidoreductase 11 205 4.6E-23 T 13-10-2018 RAM_33820 919dd5979a8db242c3cde33682d99946 149 Gene3D G3DSA:1.10.10.10 2 147 1.1E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_33820 919dd5979a8db242c3cde33682d99946 149 SMART SM00347 31 133 7.4E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_33820 919dd5979a8db242c3cde33682d99946 149 SUPERFAMILY SSF46785 12 145 4.46E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_33820 919dd5979a8db242c3cde33682d99946 149 Pfam PF12802 MarR family 45 97 1.9E-9 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_26055 e85136542a7c5146b0dbd8280d1eeb19 574 SUPERFAMILY SSF50447 171 258 1.49E-17 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RAM_26055 e85136542a7c5146b0dbd8280d1eeb19 574 SUPERFAMILY SSF52540 2 189 1.09E-36 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_26055 e85136542a7c5146b0dbd8280d1eeb19 574 Gene3D G3DSA:3.40.50.300 3 164 1.1E-38 T 13-10-2018 RAM_26055 e85136542a7c5146b0dbd8280d1eeb19 574 TIGRFAM TIGR00475 selB: selenocysteine-specific translation elongation factor 3 338 1.0E-72 T 13-10-2018 IPR004535 Translation elongation factor, selenocysteine-specific GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 RAM_26055 e85136542a7c5146b0dbd8280d1eeb19 574 Gene3D G3DSA:2.40.30.10 170 283 9.8E-24 T 13-10-2018 RAM_26055 e85136542a7c5146b0dbd8280d1eeb19 574 Pfam PF00009 Elongation factor Tu GTP binding domain 2 125 2.9E-22 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_26055 e85136542a7c5146b0dbd8280d1eeb19 574 Gene3D G3DSA:1.10.10.10 517 573 3.5E-10 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_26055 e85136542a7c5146b0dbd8280d1eeb19 574 Pfam PF09107 Elongation factor SelB, winged helix 525 568 4.0E-10 T 13-10-2018 IPR015191 Translation elongation factor SelB, winged helix, type 3 GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 RAM_40915 2f21ff83a6ea6429b1263bc3ea7dd796 393 Pfam PF03949 Malic enzyme, NAD binding domain 169 386 2.3E-19 T 13-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 RAM_40915 2f21ff83a6ea6429b1263bc3ea7dd796 393 Gene3D G3DSA:3.40.50.720 165 393 2.3E-70 T 13-10-2018 RAM_40915 2f21ff83a6ea6429b1263bc3ea7dd796 393 Pfam PF00390 Malic enzyme, N-terminal domain 24 155 9.4E-25 T 13-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RAM_40915 2f21ff83a6ea6429b1263bc3ea7dd796 393 Gene3D G3DSA:3.40.50.10380 12 164 2.6E-61 T 13-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 RAM_40915 2f21ff83a6ea6429b1263bc3ea7dd796 393 PIRSF PIRSF000106 12 393 5.6E-68 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RAM_40915 2f21ff83a6ea6429b1263bc3ea7dd796 393 SMART SM01274 22 155 1.9E-70 T 13-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RAM_40915 2f21ff83a6ea6429b1263bc3ea7dd796 393 SMART SM00919 167 387 9.0E-105 T 13-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 RAM_40915 2f21ff83a6ea6429b1263bc3ea7dd796 393 SUPERFAMILY SSF51735 167 392 4.13E-65 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_40915 2f21ff83a6ea6429b1263bc3ea7dd796 393 SUPERFAMILY SSF53223 17 165 1.58E-49 T 13-10-2018 RAM_32125 c010578e795a4e4740d7c776d8c1f70e 243 Pfam PF14011 EspG family 5 236 2.8E-60 T 13-10-2018 IPR025734 EspG family RAM_15450 bd539283b2c69f4b96644d3e6ce8ff6e 425 SUPERFAMILY SSF55874 321 424 2.74E-13 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_15450 bd539283b2c69f4b96644d3e6ce8ff6e 425 Gene3D G3DSA:3.30.565.10 297 425 1.7E-20 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_15450 bd539283b2c69f4b96644d3e6ce8ff6e 425 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 337 424 1.6E-8 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_17850 5a1340244b6b6bc066f3b4cd89ffae31 755 SUPERFAMILY SSF55008 9 80 2.62E-19 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 RAM_17850 5a1340244b6b6bc066f3b4cd89ffae31 755 Gene3D G3DSA:3.40.1110.10 451 571 1.0E-91 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 RAM_17850 5a1340244b6b6bc066f3b4cd89ffae31 755 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 214 720 4.7E-84 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RAM_17850 5a1340244b6b6bc066f3b4cd89ffae31 755 Pfam PF00403 Heavy-metal-associated domain 16 74 1.4E-12 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 RAM_17850 5a1340244b6b6bc066f3b4cd89ffae31 755 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 662 674 2.5E-25 T 13-10-2018 RAM_17850 5a1340244b6b6bc066f3b4cd89ffae31 755 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 586 596 2.5E-25 T 13-10-2018 RAM_17850 5a1340244b6b6bc066f3b4cd89ffae31 755 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 290 304 2.5E-25 T 13-10-2018 RAM_17850 5a1340244b6b6bc066f3b4cd89ffae31 755 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 639 658 2.5E-25 T 13-10-2018 RAM_17850 5a1340244b6b6bc066f3b4cd89ffae31 755 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 440 454 2.5E-25 T 13-10-2018 RAM_17850 5a1340244b6b6bc066f3b4cd89ffae31 755 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 159 741 8.9E-178 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 RAM_17850 5a1340244b6b6bc066f3b4cd89ffae31 755 Pfam PF00702 haloacid dehalogenase-like hydrolase 436 653 1.4E-45 T 13-10-2018 RAM_17850 5a1340244b6b6bc066f3b4cd89ffae31 755 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 205 742 3.5E-154 T 13-10-2018 RAM_17850 5a1340244b6b6bc066f3b4cd89ffae31 755 SUPERFAMILY SSF81665 207 713 1.44E-11 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 RAM_17850 5a1340244b6b6bc066f3b4cd89ffae31 755 Gene3D G3DSA:3.30.70.100 14 78 7.3E-20 T 13-10-2018 RAM_17850 5a1340244b6b6bc066f3b4cd89ffae31 755 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 442 448 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 RAM_17850 5a1340244b6b6bc066f3b4cd89ffae31 755 SUPERFAMILY SSF56784 438 739 9.35E-60 T 13-10-2018 IPR036412 HAD-like superfamily RAM_17850 5a1340244b6b6bc066f3b4cd89ffae31 755 ProSitePatterns PS01047 Heavy-metal-associated domain. 18 46 - T 13-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 RAM_17850 5a1340244b6b6bc066f3b4cd89ffae31 755 Pfam PF00122 E1-E2 ATPase 242 418 2.4E-50 T 13-10-2018 RAM_17850 5a1340244b6b6bc066f3b4cd89ffae31 755 Gene3D G3DSA:3.40.50.1000 421 691 1.0E-91 T 13-10-2018 IPR023214 HAD superfamily RAM_17850 5a1340244b6b6bc066f3b4cd89ffae31 755 SUPERFAMILY SSF81653 245 340 1.83E-23 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 RAM_17850 5a1340244b6b6bc066f3b4cd89ffae31 755 PRINTS PR00943 Copper-transporting ATPase signature 423 438 4.3E-7 T 13-10-2018 RAM_17850 5a1340244b6b6bc066f3b4cd89ffae31 755 PRINTS PR00943 Copper-transporting ATPase signature 673 687 4.3E-7 T 13-10-2018 RAM_17850 5a1340244b6b6bc066f3b4cd89ffae31 755 PRINTS PR00943 Copper-transporting ATPase signature 363 377 4.3E-7 T 13-10-2018 RAM_17850 5a1340244b6b6bc066f3b4cd89ffae31 755 PRINTS PR00943 Copper-transporting ATPase signature 210 229 4.3E-7 T 13-10-2018 RAM_17850 5a1340244b6b6bc066f3b4cd89ffae31 755 PRINTS PR00943 Copper-transporting ATPase signature 616 633 4.3E-7 T 13-10-2018 RAM_17850 5a1340244b6b6bc066f3b4cd89ffae31 755 Gene3D G3DSA:2.70.150.20 233 345 1.4E-33 T 13-10-2018 RAM_43690 fd055962ea59e5d9e90c9c29113ccc00 255 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 60 242 4.8E-16 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_43690 fd055962ea59e5d9e90c9c29113ccc00 255 SUPERFAMILY SSF161098 3 245 8.13E-49 T 13-10-2018 IPR035906 MetI-like superfamily RAM_43690 fd055962ea59e5d9e90c9c29113ccc00 255 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 43 245 4.8E-63 T 13-10-2018 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 RAM_43690 fd055962ea59e5d9e90c9c29113ccc00 255 TIGRFAM TIGR01581 Mo_ABC_porter: NifC-like ABC-type porter 20 242 8.9E-72 T 13-10-2018 IPR006469 NifC-like ABC-type porter GO:0005215|GO:0016020|GO:0055085 RAM_43690 fd055962ea59e5d9e90c9c29113ccc00 255 Gene3D G3DSA:1.10.3720.10 1 251 3.6E-61 T 13-10-2018 IPR035906 MetI-like superfamily RAM_08795 6818b202c8ea42e81f7083c58c2d0278 159 Pfam PF05995 Cysteine dioxygenase type I 28 148 2.4E-20 T 13-10-2018 IPR010300 Cysteine dioxygenase type I GO:0005506|GO:0016702|GO:0055114 KEGG: 00270+1.13.11.20|KEGG: 00430+1.13.11.20|MetaCyc: PWY-5331|Reactome: R-HSA-1614558 RAM_08795 6818b202c8ea42e81f7083c58c2d0278 159 SUPERFAMILY SSF51182 12 155 1.08E-27 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RAM_08795 6818b202c8ea42e81f7083c58c2d0278 159 Gene3D G3DSA:2.60.120.10 6 152 5.1E-22 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_42190 5afd1ec45a239b125a16660c6e461729 310 TIGRFAM TIGR00444 mazG: MazG family protein 89 234 4.3E-44 T 13-10-2018 IPR011551 NTP pyrophosphohydrolase MazG RAM_42190 5afd1ec45a239b125a16660c6e461729 310 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 105 180 2.2E-26 T 13-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core RAM_42190 5afd1ec45a239b125a16660c6e461729 310 Gene3D G3DSA:1.10.287.1080 245 308 4.8E-5 T 13-10-2018 RAM_42190 5afd1ec45a239b125a16660c6e461729 310 Gene3D G3DSA:1.10.287.1080 81 206 9.1E-42 T 13-10-2018 RAM_42190 5afd1ec45a239b125a16660c6e461729 310 SUPERFAMILY SSF101386 86 184 9.45E-24 T 13-10-2018 RAM_32060 ad41beff2c1e17c8d4588c9c5beec1a4 465 Gene3D G3DSA:3.40.1190.10 101 317 7.6E-66 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RAM_32060 ad41beff2c1e17c8d4588c9c5beec1a4 465 SUPERFAMILY SSF53244 319 460 1.05E-43 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 RAM_32060 ad41beff2c1e17c8d4588c9c5beec1a4 465 SUPERFAMILY SSF53623 98 318 1.49E-55 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RAM_32060 ad41beff2c1e17c8d4588c9c5beec1a4 465 SUPERFAMILY SSF51984 9 100 5.49E-23 T 13-10-2018 RAM_32060 ad41beff2c1e17c8d4588c9c5beec1a4 465 Pfam PF08245 Mur ligase middle domain 117 299 4.3E-27 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 RAM_32060 ad41beff2c1e17c8d4588c9c5beec1a4 465 Pfam PF02875 Mur ligase family, glutamate ligase domain 320 406 2.9E-24 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 RAM_32060 ad41beff2c1e17c8d4588c9c5beec1a4 465 Gene3D G3DSA:3.40.50.720 9 100 1.3E-28 T 13-10-2018 RAM_32060 ad41beff2c1e17c8d4588c9c5beec1a4 465 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 8 464 37.749 T 13-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RAM_32060 ad41beff2c1e17c8d4588c9c5beec1a4 465 Pfam PF01225 Mur ligase family, catalytic domain 12 113 4.5E-26 T 13-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 RAM_32060 ad41beff2c1e17c8d4588c9c5beec1a4 465 Gene3D G3DSA:3.90.190.20 318 465 9.6E-52 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 RAM_32060 ad41beff2c1e17c8d4588c9c5beec1a4 465 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 11 458 6.4E-142 T 13-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RAM_44815 cb30f0a3976b575d13d60fd3eb65baf7 503 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 22 503 35.273 T 13-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RAM_44815 cb30f0a3976b575d13d60fd3eb65baf7 503 SUPERFAMILY SSF50249 15 155 6.37E-35 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_44815 cb30f0a3976b575d13d60fd3eb65baf7 503 SUPERFAMILY SSF55681 163 501 1.49E-100 T 13-10-2018 RAM_44815 cb30f0a3976b575d13d60fd3eb65baf7 503 PRINTS PR00982 Lysyl-tRNA synthetase signature 244 257 2.5E-32 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RAM_44815 cb30f0a3976b575d13d60fd3eb65baf7 503 PRINTS PR00982 Lysyl-tRNA synthetase signature 386 402 2.5E-32 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RAM_44815 cb30f0a3976b575d13d60fd3eb65baf7 503 PRINTS PR00982 Lysyl-tRNA synthetase signature 215 231 2.5E-32 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RAM_44815 cb30f0a3976b575d13d60fd3eb65baf7 503 PRINTS PR00982 Lysyl-tRNA synthetase signature 199 209 2.5E-32 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RAM_44815 cb30f0a3976b575d13d60fd3eb65baf7 503 PRINTS PR00982 Lysyl-tRNA synthetase signature 262 279 2.5E-32 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RAM_44815 cb30f0a3976b575d13d60fd3eb65baf7 503 Gene3D G3DSA:3.30.930.10 161 503 3.6E-111 T 13-10-2018 RAM_44815 cb30f0a3976b575d13d60fd3eb65baf7 503 Pfam PF00152 tRNA synthetases class II (D, K and N) 163 500 3.4E-69 T 13-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 RAM_44815 cb30f0a3976b575d13d60fd3eb65baf7 503 Pfam PF01336 OB-fold nucleic acid binding domain 70 145 2.1E-8 T 13-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 RAM_44815 cb30f0a3976b575d13d60fd3eb65baf7 503 Gene3D G3DSA:2.40.50.140 17 155 1.9E-38 T 13-10-2018 RAM_44815 cb30f0a3976b575d13d60fd3eb65baf7 503 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 17 502 8.8E-142 T 13-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RAM_09755 b68463f9bf973d5b3429ce8ed545ebdb 525 Pfam PF16499 Alpha galactosidase A 31 297 6.7E-78 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_09755 b68463f9bf973d5b3429ce8ed545ebdb 525 SUPERFAMILY SSF50370 394 522 1.01E-31 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_09755 b68463f9bf973d5b3429ce8ed545ebdb 525 Gene3D G3DSA:2.60.40.1180 300 386 3.0E-21 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta RAM_09755 b68463f9bf973d5b3429ce8ed545ebdb 525 ProSitePatterns PS00512 Alpha-galactosidase signature. 67 83 - T 13-10-2018 IPR000111 Glycoside hydrolase family 27/36, conserved site GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_09755 b68463f9bf973d5b3429ce8ed545ebdb 525 PRINTS PR00740 Glycosyl hydrolase family 27 signature 62 77 3.2E-52 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_09755 b68463f9bf973d5b3429ce8ed545ebdb 525 PRINTS PR00740 Glycosyl hydrolase family 27 signature 103 124 3.2E-52 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_09755 b68463f9bf973d5b3429ce8ed545ebdb 525 PRINTS PR00740 Glycosyl hydrolase family 27 signature 253 274 3.2E-52 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_09755 b68463f9bf973d5b3429ce8ed545ebdb 525 PRINTS PR00740 Glycosyl hydrolase family 27 signature 26 45 3.2E-52 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_09755 b68463f9bf973d5b3429ce8ed545ebdb 525 PRINTS PR00740 Glycosyl hydrolase family 27 signature 168 186 3.2E-52 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_09755 b68463f9bf973d5b3429ce8ed545ebdb 525 PRINTS PR00740 Glycosyl hydrolase family 27 signature 137 154 3.2E-52 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_09755 b68463f9bf973d5b3429ce8ed545ebdb 525 Pfam PF00652 Ricin-type beta-trefoil lectin domain 396 520 5.8E-22 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_09755 b68463f9bf973d5b3429ce8ed545ebdb 525 SUPERFAMILY SSF51011 299 385 3.84E-19 T 13-10-2018 RAM_09755 b68463f9bf973d5b3429ce8ed545ebdb 525 SUPERFAMILY SSF51445 23 297 1.74E-98 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_09755 b68463f9bf973d5b3429ce8ed545ebdb 525 Gene3D G3DSA:2.80.10.50 484 523 2.8E-7 T 13-10-2018 RAM_09755 b68463f9bf973d5b3429ce8ed545ebdb 525 Gene3D G3DSA:3.20.20.70 24 298 4.6E-122 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_09755 b68463f9bf973d5b3429ce8ed545ebdb 525 SMART SM00458 394 523 1.5E-24 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_09755 b68463f9bf973d5b3429ce8ed545ebdb 525 Gene3D G3DSA:2.80.10.50 387 483 2.4E-23 T 13-10-2018 RAM_07615 d74bf761b0c1ad7b1531146d921a133a 315 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 95 108 - T 13-10-2018 IPR018313 Solute-binding protein family 3, conserved site RAM_07615 d74bf761b0c1ad7b1531146d921a133a 315 Gene3D G3DSA:3.40.190.10 81 297 2.4E-62 T 13-10-2018 RAM_07615 d74bf761b0c1ad7b1531146d921a133a 315 Gene3D G3DSA:3.40.190.10 157 263 2.4E-62 T 13-10-2018 RAM_07615 d74bf761b0c1ad7b1531146d921a133a 315 SMART SM00062 71 303 5.7E-41 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RAM_07615 d74bf761b0c1ad7b1531146d921a133a 315 SUPERFAMILY SSF53850 11 300 6.84E-51 T 13-10-2018 RAM_07615 d74bf761b0c1ad7b1531146d921a133a 315 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 74 300 3.5E-58 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RAM_22145 d5b65319406d6bc4629a5a00c08bc092 975 Gene3D G3DSA:3.20.20.300 46 741 2.3E-189 T 13-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 RAM_22145 d5b65319406d6bc4629a5a00c08bc092 975 PRINTS PR00133 Glycosyl hydrolase family 3 signature 194 210 2.7E-7 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_22145 d5b65319406d6bc4629a5a00c08bc092 975 PRINTS PR00133 Glycosyl hydrolase family 3 signature 105 124 2.7E-7 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_22145 d5b65319406d6bc4629a5a00c08bc092 975 SUPERFAMILY SSF51445 31 385 1.16E-74 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_22145 d5b65319406d6bc4629a5a00c08bc092 975 Pfam PF14310 Fibronectin type III-like domain 772 834 1.9E-14 T 13-10-2018 IPR026891 Fibronectin type III-like domain RAM_22145 d5b65319406d6bc4629a5a00c08bc092 975 Pfam PF03422 Carbohydrate binding module (family 6) 861 974 2.0E-20 T 13-10-2018 IPR005084 Carbohydrate binding module family 6 GO:0030246 RAM_22145 d5b65319406d6bc4629a5a00c08bc092 975 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 387 738 9.1E-59 T 13-10-2018 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 RAM_22145 d5b65319406d6bc4629a5a00c08bc092 975 Gene3D G3DSA:2.60.40.10 744 842 3.0E-23 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_22145 d5b65319406d6bc4629a5a00c08bc092 975 SUPERFAMILY SSF49785 853 974 4.93E-22 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_22145 d5b65319406d6bc4629a5a00c08bc092 975 Gene3D G3DSA:3.40.50.1700 380 705 2.3E-189 T 13-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 RAM_22145 d5b65319406d6bc4629a5a00c08bc092 975 SMART SM01217 771 835 4.6E-17 T 13-10-2018 IPR026891 Fibronectin type III-like domain RAM_22145 d5b65319406d6bc4629a5a00c08bc092 975 SUPERFAMILY SSF52279 387 741 1.57E-46 T 13-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 RAM_22145 d5b65319406d6bc4629a5a00c08bc092 975 Gene3D G3DSA:2.60.120.380 468 598 2.3E-189 T 13-10-2018 RAM_22145 d5b65319406d6bc4629a5a00c08bc092 975 Gene3D G3DSA:2.60.120.260 843 975 3.4E-28 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_22145 d5b65319406d6bc4629a5a00c08bc092 975 SUPERFAMILY SSF50405 453 526 6.76E-9 T 13-10-2018 IPR008999 Actin-crosslinking RAM_22145 d5b65319406d6bc4629a5a00c08bc092 975 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 87 347 1.0E-38 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_22145 d5b65319406d6bc4629a5a00c08bc092 975 SMART SM00606 853 975 4.0E-22 T 13-10-2018 IPR006584 Cellulose binding, type IV GO:0030246 RAM_20495 2b6784a9e9cab3b8cd99c1951b3792e6 1034 SUPERFAMILY SSF48452 915 1011 4.07E-12 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_20495 2b6784a9e9cab3b8cd99c1951b3792e6 1034 Pfam PF13560 Helix-turn-helix domain 21 74 2.1E-9 T 13-10-2018 RAM_20495 2b6784a9e9cab3b8cd99c1951b3792e6 1034 SMART SM00862 99 173 1.2E-4 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_20495 2b6784a9e9cab3b8cd99c1951b3792e6 1034 SUPERFAMILY SSF52540 340 597 8.9E-27 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_20495 2b6784a9e9cab3b8cd99c1951b3792e6 1034 Pfam PF00931 NB-ARC domain 365 601 1.4E-9 T 13-10-2018 IPR002182 NB-ARC GO:0043531 Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-6798695|Reactome: R-HSA-6803207|Reactome: R-HSA-8953750 RAM_20495 2b6784a9e9cab3b8cd99c1951b3792e6 1034 Gene3D G3DSA:3.40.50.300 339 491 2.3E-27 T 13-10-2018 RAM_20495 2b6784a9e9cab3b8cd99c1951b3792e6 1034 SUPERFAMILY SSF48452 774 898 1.9E-17 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_20495 2b6784a9e9cab3b8cd99c1951b3792e6 1034 Pfam PF13176 Tetratricopeptide repeat 785 813 0.032 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_20495 2b6784a9e9cab3b8cd99c1951b3792e6 1034 PRINTS PR00364 Disease resistance protein signature 367 382 5.1E-9 T 13-10-2018 RAM_20495 2b6784a9e9cab3b8cd99c1951b3792e6 1034 PRINTS PR00364 Disease resistance protein signature 529 543 5.1E-9 T 13-10-2018 RAM_20495 2b6784a9e9cab3b8cd99c1951b3792e6 1034 PRINTS PR00364 Disease resistance protein signature 445 459 5.1E-9 T 13-10-2018 RAM_20495 2b6784a9e9cab3b8cd99c1951b3792e6 1034 Gene3D G3DSA:1.25.40.10 177 338 5.7E-38 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_20495 2b6784a9e9cab3b8cd99c1951b3792e6 1034 SUPERFAMILY SSF46894 86 173 1.02E-8 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_20495 2b6784a9e9cab3b8cd99c1951b3792e6 1034 Pfam PF03704 Bacterial transcriptional activator domain 180 323 1.2E-31 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_20495 2b6784a9e9cab3b8cd99c1951b3792e6 1034 SMART SM00028 820 853 2.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_20495 2b6784a9e9cab3b8cd99c1951b3792e6 1034 SMART SM00028 976 1009 7.9 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_20495 2b6784a9e9cab3b8cd99c1951b3792e6 1034 SMART SM00028 860 893 17.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_20495 2b6784a9e9cab3b8cd99c1951b3792e6 1034 SMART SM00028 780 813 0.011 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_20495 2b6784a9e9cab3b8cd99c1951b3792e6 1034 SMART SM00028 936 969 1.1 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_20495 2b6784a9e9cab3b8cd99c1951b3792e6 1034 Gene3D G3DSA:1.25.40.10 745 906 2.1E-30 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_20495 2b6784a9e9cab3b8cd99c1951b3792e6 1034 Gene3D G3DSA:1.25.40.10 909 1031 4.7E-24 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_20495 2b6784a9e9cab3b8cd99c1951b3792e6 1034 SUPERFAMILY SSF47413 21 76 5.63E-10 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_20495 2b6784a9e9cab3b8cd99c1951b3792e6 1034 SMART SM01043 180 324 9.1E-36 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_20495 2b6784a9e9cab3b8cd99c1951b3792e6 1034 Gene3D G3DSA:1.10.10.10 82 174 3.8E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_20495 2b6784a9e9cab3b8cd99c1951b3792e6 1034 SUPERFAMILY SSF48452 177 339 3.21E-29 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_20495 2b6784a9e9cab3b8cd99c1951b3792e6 1034 Gene3D G3DSA:1.10.260.40 18 81 9.4E-12 T 13-10-2018 RAM_20495 2b6784a9e9cab3b8cd99c1951b3792e6 1034 Pfam PF12862 Anaphase-promoting complex subunit 5 937 971 2.4 T 13-10-2018 IPR026000 Anaphase-promoting complex subunit 5 domain Reactome: R-HSA-141430|Reactome: R-HSA-174048|Reactome: R-HSA-174084|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-176407|Reactome: R-HSA-176408|Reactome: R-HSA-176409|Reactome: R-HSA-176412|Reactome: R-HSA-179409|Reactome: R-HSA-2467813|Reactome: R-HSA-2559582|Reactome: R-HSA-69017|Reactome: R-HSA-983168 RAM_20495 2b6784a9e9cab3b8cd99c1951b3792e6 1034 Pfam PF13374 Tetratricopeptide repeat 980 1008 0.0064 T 13-10-2018 RAM_20495 2b6784a9e9cab3b8cd99c1951b3792e6 1034 SMART SM00530 24 80 1.1E-7 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_20495 2b6784a9e9cab3b8cd99c1951b3792e6 1034 Pfam PF13424 Tetratricopeptide repeat 820 892 6.5E-11 T 13-10-2018 RAM_38565 95680958fc244e292bd05b9520911ed0 161 Gene3D G3DSA:1.20.1290.10 17 153 5.4E-26 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_38565 95680958fc244e292bd05b9520911ed0 161 SUPERFAMILY SSF69118 21 151 1.92E-26 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_38565 95680958fc244e292bd05b9520911ed0 161 Pfam PF02627 Carboxymuconolactone decarboxylase family 28 102 5.7E-5 T 13-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RAM_41515 a1abcad2622468081d495dbac1f975cc 457 Gene3D G3DSA:2.160.20.10 38 457 4.8E-110 T 13-10-2018 IPR012334 Pectin lyase fold RAM_41515 a1abcad2622468081d495dbac1f975cc 457 Pfam PF00295 Glycosyl hydrolases family 28 207 442 2.9E-17 T 13-10-2018 IPR000743 Glycoside hydrolase, family 28 GO:0004650|GO:0005975 RAM_41515 a1abcad2622468081d495dbac1f975cc 457 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 5 29 4.3E-5 T 13-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal RAM_41515 a1abcad2622468081d495dbac1f975cc 457 Pfam PF12708 Pectate lyase superfamily protein 62 127 1.9E-9 T 13-10-2018 IPR024535 Pectate lyase superfamily protein RAM_41515 a1abcad2622468081d495dbac1f975cc 457 SUPERFAMILY SSF51126 52 429 8.77E-73 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor RAM_35540 8531a001b3abc5a7fd48cfd767ca324f 444 SUPERFAMILY SSF50974 51 244 5.49E-5 T 13-10-2018 IPR011045 Nitrous oxide reductase, N-terminal Reactome: R-HSA-114608 RAM_35540 8531a001b3abc5a7fd48cfd767ca324f 444 Pfam PF08309 LVIVD repeat 425 438 2.4 T 13-10-2018 IPR013211 LVIVD RAM_36695 b3f547e73ee0e780d5a9d114f55b7fab 139 Pfam PF02627 Carboxymuconolactone decarboxylase family 54 127 7.7E-22 T 13-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RAM_36695 b3f547e73ee0e780d5a9d114f55b7fab 139 Gene3D G3DSA:1.20.1290.10 16 132 2.8E-27 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_36695 b3f547e73ee0e780d5a9d114f55b7fab 139 SUPERFAMILY SSF69118 52 129 2.36E-25 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_15415 de40266c9bbd0ce5228124336e2e7543 107 Pfam PF12840 Helix-turn-helix domain 22 73 6.2E-9 T 13-10-2018 RAM_15415 de40266c9bbd0ce5228124336e2e7543 107 Gene3D G3DSA:1.10.10.10 13 93 2.8E-13 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_15415 de40266c9bbd0ce5228124336e2e7543 107 SUPERFAMILY SSF46785 9 98 7.9E-14 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_15415 de40266c9bbd0ce5228124336e2e7543 107 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 54 69 8.2E-6 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_15415 de40266c9bbd0ce5228124336e2e7543 107 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 23 38 8.2E-6 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_15415 de40266c9bbd0ce5228124336e2e7543 107 SMART SM00418 21 98 8.5E-5 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_27930 b03f4ab27d096ee980f02be9ba53dbcf 203 SUPERFAMILY SSF54631 1 131 4.04E-32 T 13-10-2018 RAM_27930 b03f4ab27d096ee980f02be9ba53dbcf 203 SMART SM00116 10 58 1.5E-12 T 13-10-2018 IPR000644 CBS domain RAM_27930 b03f4ab27d096ee980f02be9ba53dbcf 203 SMART SM00116 85 132 1.3E-8 T 13-10-2018 IPR000644 CBS domain RAM_27930 b03f4ab27d096ee980f02be9ba53dbcf 203 Pfam PF00571 CBS domain 3 55 7.0E-16 T 13-10-2018 IPR000644 CBS domain RAM_27930 b03f4ab27d096ee980f02be9ba53dbcf 203 Pfam PF00571 CBS domain 78 132 2.2E-10 T 13-10-2018 IPR000644 CBS domain RAM_27930 b03f4ab27d096ee980f02be9ba53dbcf 203 Gene3D G3DSA:3.10.580.10 1 154 6.9E-37 T 13-10-2018 RAM_45715 4093d75fbc23845f0f7fb7dbf9ebf2c1 198 SUPERFAMILY SSF111304 3 198 5.1E-70 T 13-10-2018 IPR023627 Recombination protein RecR RAM_45715 4093d75fbc23845f0f7fb7dbf9ebf2c1 198 Pfam PF13662 Toprim domain 80 171 2.8E-25 T 13-10-2018 IPR006171 TOPRIM domain RAM_45715 4093d75fbc23845f0f7fb7dbf9ebf2c1 198 ProSitePatterns PS01300 RecR protein signature. 56 77 - T 13-10-2018 IPR015967 Recombination protein RecR, conserved site GO:0006281|GO:0006310 RAM_45715 4093d75fbc23845f0f7fb7dbf9ebf2c1 198 Gene3D G3DSA:1.10.8.420 2 51 2.0E-17 T 13-10-2018 RAM_45715 4093d75fbc23845f0f7fb7dbf9ebf2c1 198 Pfam PF02132 RecR protein 39 77 5.8E-14 T 13-10-2018 IPR023628 Recombination protein RecR, C4-type zinc finger RAM_45715 4093d75fbc23845f0f7fb7dbf9ebf2c1 198 Gene3D G3DSA:3.40.1360.10 76 198 2.6E-45 T 13-10-2018 RAM_45715 4093d75fbc23845f0f7fb7dbf9ebf2c1 198 TIGRFAM TIGR00615 recR: recombination protein RecR 2 196 1.8E-82 T 13-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 RAM_45715 4093d75fbc23845f0f7fb7dbf9ebf2c1 198 Pfam PF00633 Helix-hairpin-helix motif 2 27 5.4E-6 T 13-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 RAM_45715 4093d75fbc23845f0f7fb7dbf9ebf2c1 198 Hamap MF_00017 Recombination protein RecR [recR]. 1 198 99.921 T 13-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 RAM_45715 4093d75fbc23845f0f7fb7dbf9ebf2c1 198 SMART SM00493 79 164 1.3E-17 T 13-10-2018 IPR006171 TOPRIM domain RAM_34775 0d2fd2a46a0368fc0c8647eec9e752f6 277 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 41 58 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 RAM_34775 0d2fd2a46a0368fc0c8647eec9e752f6 277 Pfam PF00248 Aldo/keto reductase family 24 194 1.3E-39 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain RAM_34775 0d2fd2a46a0368fc0c8647eec9e752f6 277 Pfam PF00248 Aldo/keto reductase family 202 259 1.7E-8 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain RAM_34775 0d2fd2a46a0368fc0c8647eec9e752f6 277 PIRSF PIRSF000097 2 274 2.9E-89 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_34775 0d2fd2a46a0368fc0c8647eec9e752f6 277 Gene3D G3DSA:3.20.20.100 1 277 6.2E-118 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_34775 0d2fd2a46a0368fc0c8647eec9e752f6 277 SUPERFAMILY SSF51430 7 269 1.57E-95 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_34775 0d2fd2a46a0368fc0c8647eec9e752f6 277 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 125 142 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 RAM_34775 0d2fd2a46a0368fc0c8647eec9e752f6 277 PRINTS PR00069 Aldo-keto reductase signature 93 111 8.3E-50 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_34775 0d2fd2a46a0368fc0c8647eec9e752f6 277 PRINTS PR00069 Aldo-keto reductase signature 125 142 8.3E-50 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_34775 0d2fd2a46a0368fc0c8647eec9e752f6 277 PRINTS PR00069 Aldo-keto reductase signature 37 61 8.3E-50 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_34775 0d2fd2a46a0368fc0c8647eec9e752f6 277 PRINTS PR00069 Aldo-keto reductase signature 197 221 8.3E-50 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_34775 0d2fd2a46a0368fc0c8647eec9e752f6 277 PRINTS PR00069 Aldo-keto reductase signature 159 188 8.3E-50 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_34775 0d2fd2a46a0368fc0c8647eec9e752f6 277 ProSitePatterns PS00063 Aldo/keto reductase family putative active site signature. 230 245 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 SUPERFAMILY SSF56801 1595 2486 2.62E-164 T 13-10-2018 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 Gene3D G3DSA:3.30.559.10 2559 2927 4.5E-155 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 SUPERFAMILY SSF52777 2741 2981 2.22E-63 T 13-10-2018 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 SUPERFAMILY SSF52777 2560 2728 4.0E-48 T 13-10-2018 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1771 1782 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 ProSitePatterns PS00012 Phosphopantetheine attachment site. 2497 2512 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 SUPERFAMILY SSF52777 4983 5184 1.11E-47 T 13-10-2018 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 Gene3D G3DSA:1.10.1200.10 1085 1168 7.1E-30 T 13-10-2018 IPR036736 ACP-like superfamily RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 Gene3D G3DSA:1.10.1200.10 4896 4974 1.7E-28 T 13-10-2018 IPR036736 ACP-like superfamily RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 Gene3D G3DSA:1.10.1200.10 3879 3961 4.7E-30 T 13-10-2018 IPR036736 ACP-like superfamily RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 Gene3D G3DSA:1.10.1200.10 2461 2544 1.3E-29 T 13-10-2018 IPR036736 ACP-like superfamily RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1120 1135 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 SUPERFAMILY SSF53335 682 879 2.81E-22 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 SUPERFAMILY SSF52777 3979 4149 2.22E-50 T 13-10-2018 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 SUPERFAMILY SSF47336 5934 6004 7.85E-17 T 13-10-2018 IPR036736 ACP-like superfamily RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 Pfam PF08241 Methyltransferase domain 2136 2238 8.8E-11 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 Gene3D G3DSA:3.40.50.12780 216 604 6.9E-142 T 13-10-2018 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 SUPERFAMILY SSF53335 3480 3675 1.05E-23 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 SUPERFAMILY SSF52777 13 212 7.23E-23 T 13-10-2018 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 Gene3D G3DSA:3.30.559.30 1357 1602 3.5E-158 T 13-10-2018 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 Gene3D G3DSA:3.30.559.30 4153 4402 9.5E-160 T 13-10-2018 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 SUPERFAMILY SSF47336 2467 2571 3.14E-20 T 13-10-2018 IPR036736 ACP-like superfamily RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 SUPERFAMILY SSF56801 183 1109 1.83E-155 T 13-10-2018 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 ProSitePatterns PS00455 Putative AMP-binding domain signature. 4561 4572 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 SUPERFAMILY SSF53335 2096 2242 6.96E-25 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 Gene3D G3DSA:3.30.300.30 2020 2091 4.0E-16 T 13-10-2018 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 Gene3D G3DSA:3.30.300.30 606 677 4.2E-12 T 13-10-2018 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 SUPERFAMILY SSF52777 1185 1353 2.45E-50 T 13-10-2018 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 Pfam PF13193 AMP-binding enzyme C-terminal domain 5848 5918 5.1E-13 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 Pfam PF13193 AMP-binding enzyme C-terminal domain 4816 4882 2.0E-8 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 ProSitePatterns PS00455 Putative AMP-binding domain signature. 5581 5592 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 Pfam PF00501 AMP-binding enzyme 4433 4808 3.5E-83 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 Pfam PF00501 AMP-binding enzyme 224 612 7.5E-93 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 Pfam PF00501 AMP-binding enzyme 3017 3408 3.1E-94 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 Pfam PF00501 AMP-binding enzyme 5452 5840 4.5E-86 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 Pfam PF00501 AMP-binding enzyme 1636 2025 2.4E-100 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 ProSitePatterns PS00012 Phosphopantetheine attachment site. 4929 4944 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 Gene3D G3DSA:3.30.559.10 3978 4343 9.5E-160 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 SUPERFAMILY SSF47336 1089 1162 1.44E-21 T 13-10-2018 IPR036736 ACP-like superfamily RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 ProSitePatterns PS00012 Phosphopantetheine attachment site. 3914 3929 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 Gene3D G3DSA:3.30.559.30 12 211 2.3E-27 T 13-10-2018 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 Pfam PF00550 Phosphopantetheine attachment site 3892 3955 7.3E-15 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 Pfam PF00550 Phosphopantetheine attachment site 5942 6004 1.2E-11 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 Pfam PF00550 Phosphopantetheine attachment site 4906 4970 2.7E-15 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 Pfam PF00550 Phosphopantetheine attachment site 2474 2536 7.0E-14 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 Pfam PF00550 Phosphopantetheine attachment site 1098 1161 4.3E-16 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 ProSitePatterns PS00455 Putative AMP-binding domain signature. 361 372 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 Gene3D G3DSA:3.40.50.12780 5439 5834 5.7E-125 T 13-10-2018 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 Gene3D G3DSA:3.40.50.12780 4424 4802 3.0E-122 T 13-10-2018 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 Gene3D G3DSA:3.40.50.12780 1622 2019 1.2E-150 T 13-10-2018 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 Gene3D G3DSA:3.40.50.12780 3004 3402 1.5E-136 T 13-10-2018 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 SUPERFAMILY SSF52777 5173 5432 1.67E-57 T 13-10-2018 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 Gene3D G3DSA:3.30.300.30 2361 2460 4.5E-14 T 13-10-2018 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 Gene3D G3DSA:3.30.300.30 3403 3483 8.7E-14 T 13-10-2018 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 Gene3D G3DSA:3.30.300.30 4803 4895 2.9E-28 T 13-10-2018 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 Gene3D G3DSA:3.30.300.30 5835 5931 3.2E-34 T 13-10-2018 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 Gene3D G3DSA:3.30.559.30 5168 5414 3.3E-150 T 13-10-2018 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 SUPERFAMILY SSF56801 5407 5954 5.23E-142 T 13-10-2018 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 Gene3D G3DSA:3.30.559.10 1184 1546 3.5E-158 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 3038 3432 3.5E-129 T 13-10-2018 IPR010071 Amino acid adenylation domain RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 5470 5864 2.2E-115 T 13-10-2018 IPR010071 Amino acid adenylation domain RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1657 2049 1.7E-135 T 13-10-2018 IPR010071 Amino acid adenylation domain RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 245 636 1.7E-130 T 13-10-2018 IPR010071 Amino acid adenylation domain RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 4454 4832 6.5E-110 T 13-10-2018 IPR010071 Amino acid adenylation domain RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 SUPERFAMILY SSF47336 4899 4970 4.71E-20 T 13-10-2018 IPR036736 ACP-like superfamily RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 Pfam PF08242 Methyltransferase domain 720 818 6.2E-9 T 13-10-2018 IPR013217 Methyltransferase type 12 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 Pfam PF08242 Methyltransferase domain 3518 3615 8.8E-11 T 13-10-2018 IPR013217 Methyltransferase type 12 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 SMART SM00823 Phosphopantetheine attachment site 4905 4974 1.4E-10 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 SMART SM00823 Phosphopantetheine attachment site 1096 1165 7.0E-16 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 SMART SM00823 Phosphopantetheine attachment site 3890 3959 4.2E-8 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 SMART SM00823 Phosphopantetheine attachment site 5941 6010 8.7E-5 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 SMART SM00823 Phosphopantetheine attachment site 2473 2542 4.5E-7 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 Gene3D G3DSA:3.40.50.150 2102 2275 1.0E-33 T 13-10-2018 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 Gene3D G3DSA:3.40.50.150 680 857 1.7E-28 T 13-10-2018 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 Gene3D G3DSA:3.40.50.150 3484 3655 1.6E-29 T 13-10-2018 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 ProSitePatterns PS00455 Putative AMP-binding domain signature. 3156 3167 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 SUPERFAMILY SSF56801 4396 4918 6.15E-136 T 13-10-2018 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 SUPERFAMILY SSF56801 2977 3897 7.94E-144 T 13-10-2018 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 Gene3D G3DSA:3.40.50.1820 5932 6011 4.5E-25 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 SUPERFAMILY SSF52777 4157 4400 8.15E-61 T 13-10-2018 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 Gene3D G3DSA:3.30.559.10 4990 5358 3.3E-150 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 SUPERFAMILY SSF52777 1360 1605 6.23E-67 T 13-10-2018 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 Pfam PF00668 Condensation domain 1183 1616 1.9E-95 T 13-10-2018 IPR001242 Condensation domain RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 Pfam PF00668 Condensation domain 3975 4416 1.5E-92 T 13-10-2018 IPR001242 Condensation domain RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 Pfam PF00668 Condensation domain 4987 5428 1.5E-85 T 13-10-2018 IPR001242 Condensation domain RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 Pfam PF00668 Condensation domain 2558 2995 1.2E-91 T 13-10-2018 IPR001242 Condensation domain RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 Gene3D G3DSA:3.30.559.30 2737 2983 4.5E-155 T 13-10-2018 RAM_25630 fe3c4968ac3a50666ddb26190daa844a 6011 SUPERFAMILY SSF47336 3883 3955 6.54E-21 T 13-10-2018 IPR036736 ACP-like superfamily RAM_36795 684e7c593c572b64179f827c928e11ed 243 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 126 154 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_36795 684e7c593c572b64179f827c928e11ed 243 Gene3D G3DSA:3.40.50.720 1 241 1.2E-57 T 13-10-2018 RAM_36795 684e7c593c572b64179f827c928e11ed 243 SUPERFAMILY SSF51735 1 240 4.05E-58 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_36795 684e7c593c572b64179f827c928e11ed 243 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 5 238 8.5E-43 T 13-10-2018 RAM_36795 684e7c593c572b64179f827c928e11ed 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 67 78 5.4E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36795 684e7c593c572b64179f827c928e11ed 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 113 129 5.4E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36795 684e7c593c572b64179f827c928e11ed 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 139 158 5.4E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36795 684e7c593c572b64179f827c928e11ed 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 177 5.4E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36795 684e7c593c572b64179f827c928e11ed 243 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 139 158 7.9E-6 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36795 684e7c593c572b64179f827c928e11ed 243 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 67 78 7.9E-6 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36795 684e7c593c572b64179f827c928e11ed 243 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 119 127 7.9E-6 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_14045 506ca7dbd841c7894f05efcb52545e62 598 Gene3D G3DSA:3.60.20.40 407 591 1.9E-53 T 13-10-2018 RAM_14045 506ca7dbd841c7894f05efcb52545e62 598 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 139 157 5.4E-71 T 13-10-2018 RAM_14045 506ca7dbd841c7894f05efcb52545e62 598 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 467 482 5.4E-71 T 13-10-2018 RAM_14045 506ca7dbd841c7894f05efcb52545e62 598 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 431 449 5.4E-71 T 13-10-2018 RAM_14045 506ca7dbd841c7894f05efcb52545e62 598 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 157 176 5.4E-71 T 13-10-2018 RAM_14045 506ca7dbd841c7894f05efcb52545e62 598 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 266 282 5.4E-71 T 13-10-2018 RAM_14045 506ca7dbd841c7894f05efcb52545e62 598 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 65 90 5.4E-71 T 13-10-2018 RAM_14045 506ca7dbd841c7894f05efcb52545e62 598 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 296 315 5.4E-71 T 13-10-2018 RAM_14045 506ca7dbd841c7894f05efcb52545e62 598 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 407 425 5.4E-71 T 13-10-2018 RAM_14045 506ca7dbd841c7894f05efcb52545e62 598 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 491 508 5.4E-71 T 13-10-2018 RAM_14045 506ca7dbd841c7894f05efcb52545e62 598 Gene3D G3DSA:1.10.246.130 282 400 1.2E-33 T 13-10-2018 RAM_14045 506ca7dbd841c7894f05efcb52545e62 598 Pfam PF01019 Gamma-glutamyltranspeptidase 58 586 7.4E-153 T 13-10-2018 RAM_14045 506ca7dbd841c7894f05efcb52545e62 598 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 45 580 2.4E-127 T 13-10-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-4061|MetaCyc: PWY-5826|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7559 RAM_14045 506ca7dbd841c7894f05efcb52545e62 598 SUPERFAMILY SSF56235 35 589 8.3E-154 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RAM_46230 9e3680db6c636a4dbef5417f47198745 103 Pfam PF07210 Protein of unknown function (DUF1416) 7 102 5.1E-39 T 13-10-2018 IPR010814 Protein of unknown function DUF1416 RAM_46230 9e3680db6c636a4dbef5417f47198745 103 SUPERFAMILY SSF49478 28 80 8.63E-7 T 13-10-2018 RAM_32500 9442d179cded9e7b46c5d0a8b615a236 1004 Gene3D G3DSA:1.10.10.2480 3 62 7.2E-14 T 13-10-2018 RAM_32500 9442d179cded9e7b46c5d0a8b615a236 1004 SUPERFAMILY SSF52540 500 666 7.46E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_32500 9442d179cded9e7b46c5d0a8b615a236 1004 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 3 52 1.7E-14 T 13-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal RAM_32500 9442d179cded9e7b46c5d0a8b615a236 1004 PRINTS PR00315 GTP-binding elongation factor signature 503 516 2.5E-9 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_32500 9442d179cded9e7b46c5d0a8b615a236 1004 PRINTS PR00315 GTP-binding elongation factor signature 555 565 2.5E-9 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_32500 9442d179cded9e7b46c5d0a8b615a236 1004 PRINTS PR00315 GTP-binding elongation factor signature 571 582 2.5E-9 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_32500 9442d179cded9e7b46c5d0a8b615a236 1004 PRINTS PR00315 GTP-binding elongation factor signature 607 616 2.5E-9 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_32500 9442d179cded9e7b46c5d0a8b615a236 1004 Gene3D G3DSA:3.40.50.10050 798 905 1.3E-34 T 13-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily RAM_32500 9442d179cded9e7b46c5d0a8b615a236 1004 Gene3D G3DSA:2.40.30.10 906 1004 1.8E-29 T 13-10-2018 RAM_32500 9442d179cded9e7b46c5d0a8b615a236 1004 ProSitePatterns PS01176 Initiation factor 2 signature. 956 978 - T 13-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 RAM_32500 9442d179cded9e7b46c5d0a8b615a236 1004 Pfam PF00009 Elongation factor Tu GTP binding domain 504 664 1.0E-33 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_32500 9442d179cded9e7b46c5d0a8b615a236 1004 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 4 1003 16.785 T 13-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 RAM_32500 9442d179cded9e7b46c5d0a8b615a236 1004 Gene3D G3DSA:2.40.30.10 676 794 1.4E-38 T 13-10-2018 RAM_32500 9442d179cded9e7b46c5d0a8b615a236 1004 SUPERFAMILY SSF50447 677 760 5.3E-23 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RAM_32500 9442d179cded9e7b46c5d0a8b615a236 1004 Gene3D G3DSA:3.40.50.300 496 675 5.3E-67 T 13-10-2018 RAM_32500 9442d179cded9e7b46c5d0a8b615a236 1004 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 411 1002 4.5E-226 T 13-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 RAM_32500 9442d179cded9e7b46c5d0a8b615a236 1004 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 502 661 1.1E-32 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 RAM_32500 9442d179cded9e7b46c5d0a8b615a236 1004 Pfam PF11987 Translation-initiation factor 2 792 894 2.6E-33 T 13-10-2018 IPR023115 Translation initiation factor IF- 2, domain 3 RAM_32500 9442d179cded9e7b46c5d0a8b615a236 1004 SUPERFAMILY SSF50447 905 1003 5.11E-27 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RAM_32500 9442d179cded9e7b46c5d0a8b615a236 1004 SUPERFAMILY SSF52156 783 911 8.37E-36 T 13-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily RAM_28180 34a876e31f610c211af5afdb8cea355e 149 Pfam PF01019 Gamma-glutamyltranspeptidase 27 148 2.9E-31 T 13-10-2018 RAM_28180 34a876e31f610c211af5afdb8cea355e 149 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 34 59 1.1E-13 T 13-10-2018 RAM_28180 34a876e31f610c211af5afdb8cea355e 149 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 104 122 1.1E-13 T 13-10-2018 RAM_28180 34a876e31f610c211af5afdb8cea355e 149 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 122 141 1.1E-13 T 13-10-2018 RAM_28180 34a876e31f610c211af5afdb8cea355e 149 SUPERFAMILY SSF56235 3 146 1.66E-42 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RAM_25010 21cd2e0e36b0c163e50e5b0d420a95fc 281 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 2 182 5.3E-51 T 13-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 RAM_25010 21cd2e0e36b0c163e50e5b0d420a95fc 281 Hamap MF_00079 ATP phosphoribosyltransferase [hisG]. 1 281 31.391 T 13-10-2018 IPR020621 ATP phosphoribosyltransferase HisG, long form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17 RAM_25010 21cd2e0e36b0c163e50e5b0d420a95fc 281 TIGRFAM TIGR03455 HisG_C-term: ATP phosphoribosyltransferase, C-terminal domain 189 280 1.3E-29 T 13-10-2018 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 RAM_25010 21cd2e0e36b0c163e50e5b0d420a95fc 281 Gene3D G3DSA:3.40.190.10 1 91 1.2E-26 T 13-10-2018 RAM_25010 21cd2e0e36b0c163e50e5b0d420a95fc 281 SUPERFAMILY SSF53850 1 207 1.47E-62 T 13-10-2018 RAM_25010 21cd2e0e36b0c163e50e5b0d420a95fc 281 Pfam PF01634 ATP phosphoribosyltransferase 49 202 1.4E-40 T 13-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 RAM_25010 21cd2e0e36b0c163e50e5b0d420a95fc 281 Gene3D G3DSA:3.30.70.120 209 275 4.0E-29 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal RAM_25010 21cd2e0e36b0c163e50e5b0d420a95fc 281 Gene3D G3DSA:3.40.190.10 92 176 1.0E-30 T 13-10-2018 RAM_25010 21cd2e0e36b0c163e50e5b0d420a95fc 281 Pfam PF08029 HisG, C-terminal domain 206 277 7.7E-26 T 13-10-2018 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 RAM_25010 21cd2e0e36b0c163e50e5b0d420a95fc 281 SUPERFAMILY SSF54913 208 280 3.34E-21 T 13-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta RAM_47765 3ab793985514a8f1ddfb9d8c320d5371 477 Gene3D G3DSA:1.20.1250.20 276 471 1.4E-11 T 13-10-2018 RAM_47765 3ab793985514a8f1ddfb9d8c320d5371 477 Pfam PF07690 Major Facilitator Superfamily 39 426 6.4E-41 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_47765 3ab793985514a8f1ddfb9d8c320d5371 477 PRINTS PR01035 Tetracycline resistance protein signature 157 179 2.4E-5 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RAM_47765 3ab793985514a8f1ddfb9d8c320d5371 477 PRINTS PR01035 Tetracycline resistance protein signature 74 93 2.4E-5 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RAM_47765 3ab793985514a8f1ddfb9d8c320d5371 477 PRINTS PR01035 Tetracycline resistance protein signature 44 60 2.4E-5 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RAM_47765 3ab793985514a8f1ddfb9d8c320d5371 477 SUPERFAMILY SSF103473 22 468 7.98E-55 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_47765 3ab793985514a8f1ddfb9d8c320d5371 477 Gene3D G3DSA:1.20.1720.10 32 264 1.3E-37 T 13-10-2018 RAM_38640 1e822ffca5cdf965724f1dc79fd0d83a 397 SMART SM00636 29 383 3.5E-103 T 13-10-2018 IPR011583 Chitinase II GO:0008061 RAM_38640 1e822ffca5cdf965724f1dc79fd0d83a 397 ProSitePatterns PS01095 Chitinases family 18 active site. 164 172 - T 13-10-2018 IPR001579 Glycoside hydrolase, chitinase active site GO:0004553|GO:0005975 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 RAM_38640 1e822ffca5cdf965724f1dc79fd0d83a 397 Gene3D G3DSA:3.10.50.10 298 358 1.0E-131 T 13-10-2018 IPR029070 Chitinase insertion domain superfamily RAM_38640 1e822ffca5cdf965724f1dc79fd0d83a 397 SUPERFAMILY SSF51445 25 390 4.57E-77 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_38640 1e822ffca5cdf965724f1dc79fd0d83a 397 SUPERFAMILY SSF54556 295 354 5.34E-14 T 13-10-2018 IPR029070 Chitinase insertion domain superfamily RAM_38640 1e822ffca5cdf965724f1dc79fd0d83a 397 Pfam PF00704 Glycosyl hydrolases family 18 30 383 5.5E-70 T 13-10-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 RAM_38640 1e822ffca5cdf965724f1dc79fd0d83a 397 Gene3D G3DSA:3.20.20.80 33 384 1.0E-131 T 13-10-2018 RAM_16440 1e057ba4f7e653956df5c6b7e055206c 88 Gene3D G3DSA:3.10.20.440 1 88 7.2E-20 T 13-10-2018 RAM_16440 1e057ba4f7e653956df5c6b7e055206c 88 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 4 83 8.6E-24 T 13-10-2018 RAM_16440 1e057ba4f7e653956df5c6b7e055206c 88 SUPERFAMILY SSF54292 6 84 7.69E-16 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RAM_23455 a214bd5f0e94141c467631d330af08ac 268 PRINTS PR00111 Alpha/beta hydrolase fold signature 55 70 1.0E-6 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_23455 a214bd5f0e94141c467631d330af08ac 268 PRINTS PR00111 Alpha/beta hydrolase fold signature 100 113 1.0E-6 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_23455 a214bd5f0e94141c467631d330af08ac 268 PRINTS PR00111 Alpha/beta hydrolase fold signature 114 127 1.0E-6 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_23455 a214bd5f0e94141c467631d330af08ac 268 Gene3D G3DSA:3.40.50.1820 8 265 1.1E-45 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_23455 a214bd5f0e94141c467631d330af08ac 268 SUPERFAMILY SSF53474 6 258 5.0E-44 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_23455 a214bd5f0e94141c467631d330af08ac 268 Pfam PF00561 alpha/beta hydrolase fold 27 155 1.1E-21 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_47285 33f06d2cd57117a8048aa323cb1a93ae 648 SUPERFAMILY SSF52540 389 638 1.98E-78 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_47285 33f06d2cd57117a8048aa323cb1a93ae 648 Gene3D G3DSA:1.20.1560.10 42 383 2.6E-23 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RAM_47285 33f06d2cd57117a8048aa323cb1a93ae 648 SMART SM00382 423 620 5.4E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_47285 33f06d2cd57117a8048aa323cb1a93ae 648 SUPERFAMILY SSF90123 60 360 2.62E-32 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RAM_47285 33f06d2cd57117a8048aa323cb1a93ae 648 Gene3D G3DSA:3.40.50.300 388 645 1.5E-87 T 13-10-2018 RAM_47285 33f06d2cd57117a8048aa323cb1a93ae 648 Pfam PF00005 ABC transporter 414 568 1.4E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_47285 33f06d2cd57117a8048aa323cb1a93ae 648 Pfam PF00664 ABC transporter transmembrane region 74 349 7.8E-8 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 RAM_47285 33f06d2cd57117a8048aa323cb1a93ae 648 ProSitePatterns PS00211 ABC transporters family signature. 540 554 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_43080 8effefebbdfa257103bd8efc0c6e9597 208 Gene3D G3DSA:2.60.120.590 9 207 4.9E-51 T 13-10-2018 IPR037151 Alpha-ketoglutarate-dependent dioxygenase AlkB-like superfamily RAM_43080 8effefebbdfa257103bd8efc0c6e9597 208 Pfam PF13532 2OG-Fe(II) oxygenase superfamily 15 204 3.8E-45 T 13-10-2018 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like RAM_43080 8effefebbdfa257103bd8efc0c6e9597 208 SUPERFAMILY SSF51197 12 205 1.65E-45 T 13-10-2018 RAM_41930 9657ec4ca97285158a2e868c90e5fb2e 373 Pfam PF13353 4Fe-4S single cluster domain 20 137 4.1E-5 T 13-10-2018 RAM_41930 9657ec4ca97285158a2e868c90e5fb2e 373 Pfam PF04055 Radical SAM superfamily 21 169 6.2E-9 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RAM_41930 9657ec4ca97285158a2e868c90e5fb2e 373 Gene3D G3DSA:3.20.20.70 11 367 8.4E-63 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_41930 9657ec4ca97285158a2e868c90e5fb2e 373 SUPERFAMILY SSF102114 16 329 2.62E-24 T 13-10-2018 RAM_41930 9657ec4ca97285158a2e868c90e5fb2e 373 TIGRFAM TIGR04269 SAM_SPASM_FxsB: radical SAM/SPASM domain protein, FxsB family 12 359 1.2E-122 T 13-10-2018 IPR026335 Radical SAM/SPASM domain, FxsB family RAM_33670 4f37545a6d33f4cb0b63f4abd3b0b733 372 Pfam PF03022 Major royal jelly protein 85 353 5.4E-38 T 13-10-2018 IPR017996 Major royal jelly protein/protein yellow RAM_33670 4f37545a6d33f4cb0b63f4abd3b0b733 372 Gene3D G3DSA:2.120.10.30 13 370 1.6E-122 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RAM_33670 4f37545a6d33f4cb0b63f4abd3b0b733 372 SUPERFAMILY SSF63829 24 341 2.35E-24 T 13-10-2018 RAM_08440 25236cc29c8cd677e64926921281b2bf 353 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 1 349 2.4E-85 T 13-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 RAM_08440 25236cc29c8cd677e64926921281b2bf 353 Pfam PF03054 tRNA methyl transferase 1 349 3.1E-109 T 13-10-2018 RAM_08440 25236cc29c8cd677e64926921281b2bf 353 SUPERFAMILY SSF52402 1 233 1.4E-41 T 13-10-2018 RAM_08440 25236cc29c8cd677e64926921281b2bf 353 Gene3D G3DSA:2.40.30.10 269 353 1.1E-12 T 13-10-2018 RAM_08440 25236cc29c8cd677e64926921281b2bf 353 Gene3D G3DSA:2.30.30.280 202 266 1.3E-10 T 13-10-2018 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 RAM_08440 25236cc29c8cd677e64926921281b2bf 353 Gene3D G3DSA:3.40.50.620 1 200 2.1E-67 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAM_08440 25236cc29c8cd677e64926921281b2bf 353 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 1 350 32.818 T 13-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 RAM_22655 62047e133ce199102c74cb9149f49a18 156 Pfam PF07963 Prokaryotic N-terminal methylation motif 15 37 8.7E-5 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site RAM_03535 223c270e17f0d2a91d960e47fda71fee 179 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 177 2.9E-73 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RAM_03535 223c270e17f0d2a91d960e47fda71fee 179 PIRSF PIRSF002162 1 178 3.5E-48 T 13-10-2018 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_03535 223c270e17f0d2a91d960e47fda71fee 179 SUPERFAMILY SSF56053 1 83 3.93E-25 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_03535 223c270e17f0d2a91d960e47fda71fee 179 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 177 38.175 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RAM_03535 223c270e17f0d2a91d960e47fda71fee 179 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 155 163 - T 13-10-2018 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_03535 223c270e17f0d2a91d960e47fda71fee 179 Gene3D G3DSA:3.90.930.12 1 83 1.6E-30 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_03535 223c270e17f0d2a91d960e47fda71fee 179 PRINTS PR00059 Ribosomal protein L6 signature 100 116 2.4E-31 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RAM_03535 223c270e17f0d2a91d960e47fda71fee 179 PRINTS PR00059 Ribosomal protein L6 signature 72 97 2.4E-31 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RAM_03535 223c270e17f0d2a91d960e47fda71fee 179 PRINTS PR00059 Ribosomal protein L6 signature 142 163 2.4E-31 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RAM_03535 223c270e17f0d2a91d960e47fda71fee 179 SUPERFAMILY SSF56053 84 178 3.8E-34 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_03535 223c270e17f0d2a91d960e47fda71fee 179 Pfam PF00347 Ribosomal protein L6 92 165 2.5E-19 T 13-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_03535 223c270e17f0d2a91d960e47fda71fee 179 Pfam PF00347 Ribosomal protein L6 11 83 1.2E-17 T 13-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_03535 223c270e17f0d2a91d960e47fda71fee 179 Gene3D G3DSA:3.90.930.12 84 179 2.4E-39 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_05245 2277bafa3e57870b98d067b0d25590de 327 Gene3D G3DSA:2.160.10.10 161 327 2.4E-65 T 13-10-2018 RAM_05245 2277bafa3e57870b98d067b0d25590de 327 Pfam PF14789 Tetrahydrodipicolinate N-succinyltransferase middle 121 160 8.4E-21 T 13-10-2018 IPR032784 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, middle domain KEGG: 00300+2.3.1.117 RAM_05245 2277bafa3e57870b98d067b0d25590de 327 TIGRFAM TIGR03535 DapD_actino: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 12 326 1.6E-155 T 13-10-2018 IPR019875 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, actinobacteria KEGG: 00300+2.3.1.117 RAM_05245 2277bafa3e57870b98d067b0d25590de 327 Hamap MF_02122 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [dapD]. 10 324 43.229 T 13-10-2018 IPR026586 Type 2 tetrahydrodipicolinate N-succinyltransferase family GO:0008666 KEGG: 00300+2.3.1.117 RAM_05245 2277bafa3e57870b98d067b0d25590de 327 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 242 274 1.1E-12 T 13-10-2018 IPR001451 Hexapeptide repeat RAM_05245 2277bafa3e57870b98d067b0d25590de 327 Gene3D G3DSA:3.30.70.2010 6 120 2.4E-41 T 13-10-2018 RAM_05245 2277bafa3e57870b98d067b0d25590de 327 Gene3D G3DSA:3.30.60.70 121 160 1.8E-24 T 13-10-2018 IPR038361 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, middle domain superfamily KEGG: 00300+2.3.1.117 RAM_05245 2277bafa3e57870b98d067b0d25590de 327 SUPERFAMILY SSF51161 91 300 1.83E-36 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily RAM_43410 83607217e26fe603ecf9b38b95c07d70 385 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 307 384 2.6E-5 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_43410 83607217e26fe603ecf9b38b95c07d70 385 Gene3D G3DSA:3.30.565.10 260 385 1.1E-30 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_43410 83607217e26fe603ecf9b38b95c07d70 385 PRINTS PR00344 Bacterial sensor protein C-terminal signature 371 384 2.3E-5 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_43410 83607217e26fe603ecf9b38b95c07d70 385 PRINTS PR00344 Bacterial sensor protein C-terminal signature 348 366 2.3E-5 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_43410 83607217e26fe603ecf9b38b95c07d70 385 PRINTS PR00344 Bacterial sensor protein C-terminal signature 333 347 2.3E-5 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_43410 83607217e26fe603ecf9b38b95c07d70 385 SUPERFAMILY SSF55874 263 384 6.02E-19 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_43410 83607217e26fe603ecf9b38b95c07d70 385 PIRSF PIRSF037434 2 385 6.7E-78 T 13-10-2018 IPR017205 Signal transduction histidine kinase, ChrS RAM_43410 83607217e26fe603ecf9b38b95c07d70 385 SMART SM00387 297 385 2.6E-7 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_43410 83607217e26fe603ecf9b38b95c07d70 385 Pfam PF07730 Histidine kinase 192 259 3.1E-16 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_19085 2aa3f3fca33a1c30d0306309c751db57 366 Gene3D G3DSA:2.80.10.50 238 285 1.0E-14 T 13-10-2018 RAM_19085 2aa3f3fca33a1c30d0306309c751db57 366 Pfam PF00652 Ricin-type beta-trefoil lectin domain 243 363 1.6E-30 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_19085 2aa3f3fca33a1c30d0306309c751db57 366 SMART SM00458 237 366 1.8E-32 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_19085 2aa3f3fca33a1c30d0306309c751db57 366 SUPERFAMILY SSF52266 16 228 6.11E-31 T 13-10-2018 RAM_19085 2aa3f3fca33a1c30d0306309c751db57 366 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 35 213 1.3E-15 T 13-10-2018 IPR013830 SGNH hydrolase-type esterase domain RAM_19085 2aa3f3fca33a1c30d0306309c751db57 366 SUPERFAMILY SSF50370 242 364 1.39E-40 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_19085 2aa3f3fca33a1c30d0306309c751db57 366 Gene3D G3DSA:2.80.10.50 286 366 2.2E-26 T 13-10-2018 RAM_19085 2aa3f3fca33a1c30d0306309c751db57 366 Gene3D G3DSA:3.40.50.1110 31 233 2.5E-61 T 13-10-2018 IPR036514 SGNH hydrolase superfamily RAM_34435 89d5060a4f3294146fd9a2e432e2cfad 237 Pfam PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain 21 132 1.9E-18 T 13-10-2018 IPR024344 Mycothiol-dependent maleylpyruvate isomerase, metal-binding domain GO:0046872 RAM_34435 89d5060a4f3294146fd9a2e432e2cfad 237 Gene3D G3DSA:1.20.120.450 6 137 4.8E-7 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_34435 89d5060a4f3294146fd9a2e432e2cfad 237 Pfam PF07398 MDMPI C-terminal domain 141 228 1.4E-9 T 13-10-2018 IPR010872 MDMPI C-terminal RAM_34435 89d5060a4f3294146fd9a2e432e2cfad 237 SUPERFAMILY SSF109854 2 134 1.5E-11 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_34435 89d5060a4f3294146fd9a2e432e2cfad 237 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 16 215 1.9E-25 T 13-10-2018 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type RAM_41695 2c2283dc46049a0333ce13e292f571d5 200 SUPERFAMILY SSF46894 128 199 2.48E-17 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_41695 2c2283dc46049a0333ce13e292f571d5 200 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 154 170 2.6E-7 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_41695 2c2283dc46049a0333ce13e292f571d5 200 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 140 154 2.6E-7 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_41695 2c2283dc46049a0333ce13e292f571d5 200 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 170 182 2.6E-7 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_41695 2c2283dc46049a0333ce13e292f571d5 200 SMART SM00421 137 194 2.7E-19 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_41695 2c2283dc46049a0333ce13e292f571d5 200 Gene3D G3DSA:1.10.10.10 86 200 8.9E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_41695 2c2283dc46049a0333ce13e292f571d5 200 Pfam PF00196 Bacterial regulatory proteins, luxR family 140 194 5.1E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_27085 11b84190764610d7dc17817fcebe0268 702 SMART SM00889 495 613 1.8E-56 T 13-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 RAM_27085 11b84190764610d7dc17817fcebe0268 702 Pfam PF03764 Elongation factor G, domain IV 495 611 2.8E-39 T 13-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 RAM_27085 11b84190764610d7dc17817fcebe0268 702 PRINTS PR00315 GTP-binding elongation factor signature 107 118 5.2E-5 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_27085 11b84190764610d7dc17817fcebe0268 702 PRINTS PR00315 GTP-binding elongation factor signature 25 38 5.2E-5 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_27085 11b84190764610d7dc17817fcebe0268 702 PRINTS PR00315 GTP-binding elongation factor signature 91 101 5.2E-5 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_27085 11b84190764610d7dc17817fcebe0268 702 Gene3D G3DSA:2.40.30.10 310 420 3.0E-25 T 13-10-2018 RAM_27085 11b84190764610d7dc17817fcebe0268 702 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 23 156 5.3E-14 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 RAM_27085 11b84190764610d7dc17817fcebe0268 702 Gene3D G3DSA:3.30.230.10 499 698 1.0E-73 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RAM_27085 11b84190764610d7dc17817fcebe0268 702 Pfam PF00679 Elongation factor G C-terminus 616 697 1.3E-21 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like RAM_27085 11b84190764610d7dc17817fcebe0268 702 Gene3D G3DSA:3.40.50.300 15 293 6.8E-57 T 13-10-2018 RAM_27085 11b84190764610d7dc17817fcebe0268 702 SMART SM00838 615 701 8.4E-23 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like RAM_27085 11b84190764610d7dc17817fcebe0268 702 SUPERFAMILY SSF50447 255 417 1.72E-23 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RAM_27085 11b84190764610d7dc17817fcebe0268 702 SUPERFAMILY SSF54211 496 611 4.8E-34 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RAM_27085 11b84190764610d7dc17817fcebe0268 702 Pfam PF00009 Elongation factor Tu GTP binding domain 22 288 6.6E-32 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_27085 11b84190764610d7dc17817fcebe0268 702 Gene3D G3DSA:3.30.70.240 619 690 1.0E-73 T 13-10-2018 RAM_27085 11b84190764610d7dc17817fcebe0268 702 SUPERFAMILY SSF54980 618 699 6.62E-22 T 13-10-2018 IPR035647 EF-G domain III/V-like RAM_27085 11b84190764610d7dc17817fcebe0268 702 SUPERFAMILY SSF54980 419 489 1.83E-14 T 13-10-2018 IPR035647 EF-G domain III/V-like RAM_27085 11b84190764610d7dc17817fcebe0268 702 Gene3D G3DSA:3.30.70.870 421 493 1.7E-17 T 13-10-2018 RAM_27085 11b84190764610d7dc17817fcebe0268 702 Pfam PF14492 Elongation Factor G, domain II 420 490 2.7E-20 T 13-10-2018 RAM_27085 11b84190764610d7dc17817fcebe0268 702 SUPERFAMILY SSF52540 19 288 1.31E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_27085 11b84190764610d7dc17817fcebe0268 702 Pfam PF03144 Elongation factor Tu domain 2 330 406 9.6E-8 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 RAM_20210 3df0589f84da464eee083409e91527b8 189 SUPERFAMILY SSF48498 79 186 2.0E-19 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_20210 3df0589f84da464eee083409e91527b8 189 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 1.5E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_20210 3df0589f84da464eee083409e91527b8 189 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 1.5E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_20210 3df0589f84da464eee083409e91527b8 189 Gene3D G3DSA:1.10.357.10 65 188 5.2E-25 T 13-10-2018 RAM_20210 3df0589f84da464eee083409e91527b8 189 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 63 3.4E-18 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_20210 3df0589f84da464eee083409e91527b8 189 SUPERFAMILY SSF46689 2 65 8.21E-19 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_20210 3df0589f84da464eee083409e91527b8 189 Gene3D G3DSA:1.10.10.60 2 64 1.1E-21 T 13-10-2018 RAM_36560 4e954093cdc311445fef32133e057e08 382 PIRSF PIRSF016578 5 192 2.9E-8 T 13-10-2018 RAM_36560 4e954093cdc311445fef32133e057e08 382 PIRSF PIRSF016578 238 381 2.6E-5 T 13-10-2018 RAM_36560 4e954093cdc311445fef32133e057e08 382 SUPERFAMILY SSF47203 228 381 2.39E-57 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_36560 4e954093cdc311445fef32133e057e08 382 Gene3D G3DSA:1.10.540.10 1 120 5.9E-39 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_36560 4e954093cdc311445fef32133e057e08 382 Gene3D G3DSA:2.40.110.10 121 236 9.0E-36 T 13-10-2018 RAM_36560 4e954093cdc311445fef32133e057e08 382 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 230 379 1.6E-51 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_36560 4e954093cdc311445fef32133e057e08 382 SUPERFAMILY SSF56645 1 242 3.01E-76 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_36560 4e954093cdc311445fef32133e057e08 382 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 124 136 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RAM_36560 4e954093cdc311445fef32133e057e08 382 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 337 356 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RAM_36560 4e954093cdc311445fef32133e057e08 382 Gene3D G3DSA:1.20.140.10 237 382 2.9E-55 T 13-10-2018 RAM_36560 4e954093cdc311445fef32133e057e08 382 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 122 218 3.0E-22 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RAM_36560 4e954093cdc311445fef32133e057e08 382 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 117 1.1E-32 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_35590 60f014cbd586251f8781ebe64990b5bf 346 Pfam PF00356 Bacterial regulatory proteins, lacI family 8 53 4.9E-17 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_35590 60f014cbd586251f8781ebe64990b5bf 346 SUPERFAMILY SSF53822 65 344 7.46E-64 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_35590 60f014cbd586251f8781ebe64990b5bf 346 SMART SM00354 6 76 3.8E-27 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_35590 60f014cbd586251f8781ebe64990b5bf 346 Gene3D G3DSA:3.40.50.2300 66 318 1.8E-70 T 13-10-2018 RAM_35590 60f014cbd586251f8781ebe64990b5bf 346 SUPERFAMILY SSF47413 6 62 2.05E-15 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_35590 60f014cbd586251f8781ebe64990b5bf 346 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 8 18 5.4E-5 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_35590 60f014cbd586251f8781ebe64990b5bf 346 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 18 28 5.4E-5 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_35590 60f014cbd586251f8781ebe64990b5bf 346 Gene3D G3DSA:1.10.260.40 5 64 9.0E-21 T 13-10-2018 RAM_35590 60f014cbd586251f8781ebe64990b5bf 346 ProSitePatterns PS00356 LacI-type HTH domain signature. 9 27 - T 13-10-2018 RAM_35590 60f014cbd586251f8781ebe64990b5bf 346 Gene3D G3DSA:3.40.50.2300 172 303 1.8E-70 T 13-10-2018 RAM_35590 60f014cbd586251f8781ebe64990b5bf 346 Pfam PF13377 Periplasmic binding protein-like domain 181 341 1.8E-35 T 13-10-2018 RAM_41395 a5c65c95a84ff26065677e456994de11 415 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 19 409 1.7E-111 T 13-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 RAM_41395 a5c65c95a84ff26065677e456994de11 415 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 11 411 23.425 T 13-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 RAM_41395 a5c65c95a84ff26065677e456994de11 415 Pfam PF02601 Exonuclease VII, large subunit 135 353 6.4E-60 T 13-10-2018 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 RAM_41395 a5c65c95a84ff26065677e456994de11 415 Pfam PF02601 Exonuclease VII, large subunit 335 408 7.1E-8 T 13-10-2018 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 RAM_41395 a5c65c95a84ff26065677e456994de11 415 Pfam PF13742 OB-fold nucleic acid binding domain 18 112 1.7E-13 T 13-10-2018 IPR025824 OB-fold nucleic acid binding domain GO:0003676 RAM_34080 b43bafa5cde0dbb51bd275ebdf83ce0a 232 SUPERFAMILY SSF52172 3 130 6.55E-40 T 13-10-2018 IPR011006 CheY-like superfamily RAM_34080 b43bafa5cde0dbb51bd275ebdf83ce0a 232 Pfam PF00486 Transcriptional regulatory protein, C terminal 157 228 3.3E-19 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_34080 b43bafa5cde0dbb51bd275ebdf83ce0a 232 SMART SM00862 154 228 2.8E-21 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_34080 b43bafa5cde0dbb51bd275ebdf83ce0a 232 SMART SM00448 8 118 4.4E-38 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_34080 b43bafa5cde0dbb51bd275ebdf83ce0a 232 Gene3D G3DSA:3.40.50.2300 4 131 3.3E-34 T 13-10-2018 RAM_34080 b43bafa5cde0dbb51bd275ebdf83ce0a 232 Gene3D G3DSA:1.10.10.10 132 232 1.2E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_34080 b43bafa5cde0dbb51bd275ebdf83ce0a 232 SUPERFAMILY SSF46894 127 229 1.13E-24 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_34080 b43bafa5cde0dbb51bd275ebdf83ce0a 232 Pfam PF00072 Response regulator receiver domain 10 118 3.9E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_18895 7d57322b8ce7505442855fc7c24244f6 167 SMART SM00347 33 136 2.3E-15 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_18895 7d57322b8ce7505442855fc7c24244f6 167 Pfam PF12802 MarR family 40 99 7.1E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_18895 7d57322b8ce7505442855fc7c24244f6 167 SUPERFAMILY SSF46785 6 150 9.6E-28 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_18895 7d57322b8ce7505442855fc7c24244f6 167 Gene3D G3DSA:1.10.10.10 8 163 8.1E-33 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_06960 d8c26efd088e5c1b293eafa159dc2c8c 256 SMART SM00345 24 85 0.0033 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_06960 d8c26efd088e5c1b293eafa159dc2c8c 256 SUPERFAMILY SSF64288 73 252 3.14E-46 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RAM_06960 d8c26efd088e5c1b293eafa159dc2c8c 256 SMART SM00866 105 245 1.8E-37 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RAM_06960 d8c26efd088e5c1b293eafa159dc2c8c 256 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 45 59 9.0E-7 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_06960 d8c26efd088e5c1b293eafa159dc2c8c 256 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 59 75 9.0E-7 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_06960 d8c26efd088e5c1b293eafa159dc2c8c 256 Pfam PF00392 Bacterial regulatory proteins, gntR family 37 84 4.6E-10 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_06960 d8c26efd088e5c1b293eafa159dc2c8c 256 SUPERFAMILY SSF46785 22 89 7.08E-11 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_06960 d8c26efd088e5c1b293eafa159dc2c8c 256 Gene3D G3DSA:1.10.10.10 16 86 5.0E-13 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_06960 d8c26efd088e5c1b293eafa159dc2c8c 256 Pfam PF07702 UTRA domain 105 244 8.9E-40 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RAM_06960 d8c26efd088e5c1b293eafa159dc2c8c 256 Gene3D G3DSA:3.40.1410.10 87 253 1.7E-50 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RAM_18715 51e58b1dd25303ee97be828a7206c54a 984 Pfam PF15979 Glycosyl hydrolase family 115 202 553 3.1E-128 T 13-10-2018 IPR031924 Glycosyl hydrolase family 115 RAM_18715 51e58b1dd25303ee97be828a7206c54a 984 Gene3D G3DSA:3.30.379.10 42 205 5.0E-55 T 13-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 RAM_18715 51e58b1dd25303ee97be828a7206c54a 984 Gene3D G3DSA:3.20.20.520 206 510 3.9E-114 T 13-10-2018 RAM_18715 51e58b1dd25303ee97be828a7206c54a 984 Gene3D G3DSA:1.20.58.2150 517 674 1.3E-33 T 13-10-2018 RAM_18715 51e58b1dd25303ee97be828a7206c54a 984 Gene3D G3DSA:2.60.120.1620 795 976 9.8E-40 T 13-10-2018 RAM_41925 2718dee1ce544dce493ba09fb65424e6 1247 Gene3D G3DSA:3.40.50.300 433 576 5.4E-18 T 13-10-2018 RAM_41925 2718dee1ce544dce493ba09fb65424e6 1247 Pfam PF06564 Cellulose biosynthesis protein BcsQ 9 42 1.5E-4 T 13-10-2018 IPR017746 Cellulose synthase operon protein BcsQ RAM_41925 2718dee1ce544dce493ba09fb65424e6 1247 SUPERFAMILY SSF52540 434 630 9.35E-18 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_41925 2718dee1ce544dce493ba09fb65424e6 1247 Gene3D G3DSA:3.40.50.300 1 227 1.4E-18 T 13-10-2018 RAM_41925 2718dee1ce544dce493ba09fb65424e6 1247 SUPERFAMILY SSF52540 1 222 1.52E-15 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_41925 2718dee1ce544dce493ba09fb65424e6 1247 Gene3D G3DSA:1.25.40.10 1045 1237 3.9E-15 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_41925 2718dee1ce544dce493ba09fb65424e6 1247 Gene3D G3DSA:1.25.40.10 836 1041 1.8E-16 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_41925 2718dee1ce544dce493ba09fb65424e6 1247 SUPERFAMILY SSF48452 1063 1237 7.59E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_35910 67684ef9bdab5ac914ceb2c92630f357 450 TIGRFAM TIGR01415 trpB_rel: pyridoxal-phosphate dependent TrpB-like enzyme 14 429 4.6E-190 T 13-10-2018 IPR006316 Tryptophan synthase, beta chain-like GO:0000162|GO:0004834|GO:0030170 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 RAM_35910 67684ef9bdab5ac914ceb2c92630f357 450 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 78 415 6.9E-43 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RAM_35910 67684ef9bdab5ac914ceb2c92630f357 450 PIRSF PIRSF500824 2 437 2.6E-199 T 13-10-2018 IPR006316 Tryptophan synthase, beta chain-like GO:0000162|GO:0004834|GO:0030170 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 RAM_35910 67684ef9bdab5ac914ceb2c92630f357 450 SUPERFAMILY SSF53686 28 426 1.7E-108 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RAM_35910 67684ef9bdab5ac914ceb2c92630f357 450 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 22 428 39.59 T 13-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 RAM_35910 67684ef9bdab5ac914ceb2c92630f357 450 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 106 120 - T 13-10-2018 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 RAM_35910 67684ef9bdab5ac914ceb2c92630f357 450 Gene3D G3DSA:3.40.50.1100 14 421 1.1E-168 T 13-10-2018 RAM_35910 67684ef9bdab5ac914ceb2c92630f357 450 PIRSF PIRSF001413 10 434 1.2E-115 T 13-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 RAM_35910 67684ef9bdab5ac914ceb2c92630f357 450 Gene3D G3DSA:3.40.50.1100 15 239 1.1E-168 T 13-10-2018 RAM_16325 329ca24994535656d1faabc696348d36 192 Pfam PF07883 Cupin domain 119 177 3.7E-11 T 13-10-2018 IPR013096 Cupin 2, conserved barrel RAM_16325 329ca24994535656d1faabc696348d36 192 Gene3D G3DSA:1.10.260.40 9 81 1.5E-18 T 13-10-2018 RAM_16325 329ca24994535656d1faabc696348d36 192 SUPERFAMILY SSF47413 6 75 9.57E-19 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_16325 329ca24994535656d1faabc696348d36 192 SUPERFAMILY SSF51182 66 176 1.98E-21 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RAM_16325 329ca24994535656d1faabc696348d36 192 Gene3D G3DSA:2.60.120.10 85 178 1.1E-11 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_16325 329ca24994535656d1faabc696348d36 192 Pfam PF13560 Helix-turn-helix domain 12 70 2.8E-16 T 13-10-2018 RAM_16325 329ca24994535656d1faabc696348d36 192 SMART SM00530 15 70 4.9E-18 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_38235 92a550179bcf11f766f45be5ed433f63 144 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 18 76 9.0E-7 T 13-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RAM_38235 92a550179bcf11f766f45be5ed433f63 144 SUPERFAMILY SSF50475 16 116 4.86E-16 T 13-10-2018 RAM_38235 92a550179bcf11f766f45be5ed433f63 144 Gene3D G3DSA:2.30.110.10 13 131 5.5E-15 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_10140 715f8254a80b9b850c37c863b98650e3 310 Pfam PF00175 Oxidoreductase NAD-binding domain 107 195 1.5E-4 T 13-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 RAM_10140 715f8254a80b9b850c37c863b98650e3 310 Gene3D G3DSA:3.10.20.30 216 310 2.6E-24 T 13-10-2018 IPR012675 Beta-grasp domain superfamily RAM_10140 715f8254a80b9b850c37c863b98650e3 310 Gene3D G3DSA:3.40.50.80 100 212 2.1E-23 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RAM_10140 715f8254a80b9b850c37c863b98650e3 310 PRINTS PR00409 Phthalate dioxygenase reductase family signature 131 140 8.4E-23 T 13-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RAM_10140 715f8254a80b9b850c37c863b98650e3 310 PRINTS PR00409 Phthalate dioxygenase reductase family signature 182 190 8.4E-23 T 13-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RAM_10140 715f8254a80b9b850c37c863b98650e3 310 PRINTS PR00409 Phthalate dioxygenase reductase family signature 71 85 8.4E-23 T 13-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RAM_10140 715f8254a80b9b850c37c863b98650e3 310 PRINTS PR00409 Phthalate dioxygenase reductase family signature 26 36 8.4E-23 T 13-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RAM_10140 715f8254a80b9b850c37c863b98650e3 310 PRINTS PR00409 Phthalate dioxygenase reductase family signature 106 125 8.4E-23 T 13-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RAM_10140 715f8254a80b9b850c37c863b98650e3 310 PRINTS PR00409 Phthalate dioxygenase reductase family signature 36 48 8.4E-23 T 13-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RAM_10140 715f8254a80b9b850c37c863b98650e3 310 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 235 300 1.5E-10 T 13-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RAM_10140 715f8254a80b9b850c37c863b98650e3 310 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 259 267 - T 13-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RAM_10140 715f8254a80b9b850c37c863b98650e3 310 Pfam PF00970 Oxidoreductase FAD-binding domain 19 99 2.5E-4 T 13-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 RAM_10140 715f8254a80b9b850c37c863b98650e3 310 Gene3D G3DSA:2.40.30.10 1 95 2.5E-22 T 13-10-2018 RAM_10140 715f8254a80b9b850c37c863b98650e3 310 SUPERFAMILY SSF52343 93 219 1.57E-25 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RAM_10140 715f8254a80b9b850c37c863b98650e3 310 SUPERFAMILY SSF63380 2 94 5.21E-21 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RAM_10140 715f8254a80b9b850c37c863b98650e3 310 SUPERFAMILY SSF54292 202 308 5.24E-26 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RAM_32390 213a039ff83f05fe4823eab11d3e460a 246 PIRSF PIRSF000161 1 246 2.2E-66 T 13-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RAM_32390 213a039ff83f05fe4823eab11d3e460a 246 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 45 245 3.8E-56 T 13-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RAM_32390 213a039ff83f05fe4823eab11d3e460a 246 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 108 244 4.1E-31 T 13-10-2018 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RAM_32390 213a039ff83f05fe4823eab11d3e460a 246 SUPERFAMILY SSF51735 3 132 1.01E-36 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_32390 213a039ff83f05fe4823eab11d3e460a 246 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 3 245 29.817 T 13-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RAM_32390 213a039ff83f05fe4823eab11d3e460a 246 SUPERFAMILY SSF55347 106 216 6.1E-37 T 13-10-2018 RAM_32390 213a039ff83f05fe4823eab11d3e460a 246 Gene3D G3DSA:3.30.360.10 106 214 4.2E-82 T 13-10-2018 RAM_32390 213a039ff83f05fe4823eab11d3e460a 246 Gene3D G3DSA:3.40.50.720 5 234 4.2E-82 T 13-10-2018 RAM_32390 213a039ff83f05fe4823eab11d3e460a 246 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 127 144 - T 13-10-2018 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RAM_32390 213a039ff83f05fe4823eab11d3e460a 246 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 3 105 3.3E-25 T 13-10-2018 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RAM_08940 3f3334ef69243e28db8593c1127e8d4b 1125 SUPERFAMILY SSF52440 1 112 2.01E-41 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RAM_08940 3f3334ef69243e28db8593c1127e8d4b 1125 SUPERFAMILY SSF51569 517 829 9.71E-76 T 13-10-2018 RAM_08940 3f3334ef69243e28db8593c1127e8d4b 1125 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 4.5E-40 T 13-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RAM_08940 3f3334ef69243e28db8593c1127e8d4b 1125 TIGRFAM TIGR01235 pyruv_carbox: pyruvate carboxylase 4 1125 0.0 T 13-10-2018 IPR005930 Pyruvate carboxylase GO:0004736|GO:0005524|GO:0006090|GO:0006094|GO:0009374 KEGG: 00020+6.4.1.1|KEGG: 00620+6.4.1.1|KEGG: 00720+6.4.1.1|MetaCyc: PWY-5750|MetaCyc: PWY-6142|MetaCyc: PWY-6146|Reactome: R-HSA-196780|Reactome: R-HSA-3371599|Reactome: R-HSA-70263 RAM_08940 3f3334ef69243e28db8593c1127e8d4b 1125 SUPERFAMILY SSF89000 826 991 5.89E-41 T 13-10-2018 RAM_08940 3f3334ef69243e28db8593c1127e8d4b 1125 Pfam PF00364 Biotin-requiring enzyme 1066 1124 3.4E-11 T 13-10-2018 IPR000089 Biotin/lipoyl attachment RAM_08940 3f3334ef69243e28db8593c1127e8d4b 1125 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RAM_08940 3f3334ef69243e28db8593c1127e8d4b 1125 SUPERFAMILY SSF56059 84 358 1.63E-69 T 13-10-2018 RAM_08940 3f3334ef69243e28db8593c1127e8d4b 1125 Pfam PF02436 Conserved carboxylase domain 821 1008 1.2E-55 T 13-10-2018 IPR003379 Carboxylase, conserved domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599|Reactome: R-HSA-70263 RAM_08940 3f3334ef69243e28db8593c1127e8d4b 1125 SUPERFAMILY SSF51246 334 451 3.3E-37 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 RAM_08940 3f3334ef69243e28db8593c1127e8d4b 1125 Pfam PF02785 Biotin carboxylase C-terminal domain 339 447 8.6E-34 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RAM_08940 3f3334ef69243e28db8593c1127e8d4b 1125 Pfam PF00682 HMGL-like 527 796 1.1E-28 T 13-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 RAM_08940 3f3334ef69243e28db8593c1127e8d4b 1125 Gene3D G3DSA:3.20.20.70 476 989 1.0E-234 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_08940 3f3334ef69243e28db8593c1127e8d4b 1125 Gene3D G3DSA:3.10.600.10 459 1040 1.0E-234 T 13-10-2018 RAM_08940 3f3334ef69243e28db8593c1127e8d4b 1125 SMART SM00878 339 446 1.0E-54 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RAM_08940 3f3334ef69243e28db8593c1127e8d4b 1125 Gene3D G3DSA:3.30.470.130 1 454 8.4E-186 T 13-10-2018 RAM_08940 3f3334ef69243e28db8593c1127e8d4b 1125 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 117 323 3.2E-71 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RAM_08940 3f3334ef69243e28db8593c1127e8d4b 1125 PIRSF PIRSF001594 1 1125 0.0 T 13-10-2018 IPR005930 Pyruvate carboxylase GO:0004736|GO:0005524|GO:0006090|GO:0006094|GO:0009374 KEGG: 00020+6.4.1.1|KEGG: 00620+6.4.1.1|KEGG: 00720+6.4.1.1|MetaCyc: PWY-5750|MetaCyc: PWY-6142|MetaCyc: PWY-6146|Reactome: R-HSA-196780|Reactome: R-HSA-3371599|Reactome: R-HSA-70263 RAM_08940 3f3334ef69243e28db8593c1127e8d4b 1125 SUPERFAMILY SSF51230 1048 1125 8.25E-16 T 13-10-2018 IPR011053 Single hybrid motif RAM_08940 3f3334ef69243e28db8593c1127e8d4b 1125 Gene3D G3DSA:2.40.50.100 1049 1124 2.0E-17 T 13-10-2018 RAM_44640 3a7abd5ac6c6312d1d1d6c6912013df8 345 SUPERFAMILY SSF47413 1 47 1.97E-7 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_44640 3a7abd5ac6c6312d1d1d6c6912013df8 345 SUPERFAMILY SSF53822 62 326 2.72E-41 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_44640 3a7abd5ac6c6312d1d1d6c6912013df8 345 Gene3D G3DSA:1.10.260.40 1 44 7.4E-12 T 13-10-2018 RAM_44640 3a7abd5ac6c6312d1d1d6c6912013df8 345 Pfam PF13377 Periplasmic binding protein-like domain 157 331 1.8E-26 T 13-10-2018 RAM_44640 3a7abd5ac6c6312d1d1d6c6912013df8 345 SMART SM00354 1 60 3.8E-6 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_44640 3a7abd5ac6c6312d1d1d6c6912013df8 345 Gene3D G3DSA:3.40.50.2300 45 310 9.3E-54 T 13-10-2018 RAM_44640 3a7abd5ac6c6312d1d1d6c6912013df8 345 Gene3D G3DSA:3.40.50.2300 149 294 9.3E-54 T 13-10-2018 RAM_08030 1b1a2fefd2aace5d15bc99ba6380e847 460 SMART SM00345 25 84 5.9E-15 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_08030 1b1a2fefd2aace5d15bc99ba6380e847 460 Pfam PF00155 Aminotransferase class I and II 121 378 2.8E-13 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RAM_08030 1b1a2fefd2aace5d15bc99ba6380e847 460 Gene3D G3DSA:3.40.640.10 96 449 2.5E-98 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_08030 1b1a2fefd2aace5d15bc99ba6380e847 460 Gene3D G3DSA:1.10.10.10 20 87 5.2E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_08030 1b1a2fefd2aace5d15bc99ba6380e847 460 Pfam PF00392 Bacterial regulatory proteins, gntR family 25 84 1.2E-12 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_08030 1b1a2fefd2aace5d15bc99ba6380e847 460 SUPERFAMILY SSF46785 25 94 2.24E-14 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_08030 1b1a2fefd2aace5d15bc99ba6380e847 460 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 58 74 5.3E-5 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_08030 1b1a2fefd2aace5d15bc99ba6380e847 460 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 44 58 5.3E-5 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_08030 1b1a2fefd2aace5d15bc99ba6380e847 460 SUPERFAMILY SSF53383 101 457 2.09E-70 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_45475 8f840cd010d44c371dc5e14f87704e59 268 SUPERFAMILY SSF53448 1 143 2.91E-16 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_45475 8f840cd010d44c371dc5e14f87704e59 268 Gene3D G3DSA:3.90.550.10 1 174 2.1E-12 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_45475 8f840cd010d44c371dc5e14f87704e59 268 Pfam PF00535 Glycosyl transferase family 2 1 106 6.8E-13 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RAM_00345 3dabf71543e125002742e27476228a80 268 Gene3D G3DSA:1.10.3720.10 54 261 1.1E-21 T 13-10-2018 IPR035906 MetI-like superfamily RAM_00345 3dabf71543e125002742e27476228a80 268 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 82 264 3.4E-31 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_00345 3dabf71543e125002742e27476228a80 268 SUPERFAMILY SSF161098 59 246 2.75E-26 T 13-10-2018 IPR035906 MetI-like superfamily RAM_34095 a2485dadc1c8b79833c1fc9a7288a9ba 460 SUPERFAMILY SSF51338 358 454 3.24E-33 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_34095 a2485dadc1c8b79833c1fc9a7288a9ba 460 SUPERFAMILY SSF51338 1 65 1.83E-11 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_34095 a2485dadc1c8b79833c1fc9a7288a9ba 460 SUPERFAMILY SSF51556 53 381 6.81E-108 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_34095 a2485dadc1c8b79833c1fc9a7288a9ba 460 Gene3D G3DSA:2.30.40.10 6 451 3.1E-177 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_34095 a2485dadc1c8b79833c1fc9a7288a9ba 460 TIGRFAM TIGR02033 D-hydantoinase: dihydropyrimidinase 4 453 3.4E-178 T 13-10-2018 IPR011778 Hydantoinase/dihydropyrimidinase GO:0005737 Reactome: R-HSA-399956 RAM_34095 a2485dadc1c8b79833c1fc9a7288a9ba 460 Pfam PF01979 Amidohydrolase family 49 435 1.3E-29 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RAM_34095 a2485dadc1c8b79833c1fc9a7288a9ba 460 Gene3D G3DSA:3.20.20.140 53 378 3.1E-177 T 13-10-2018 RAM_04860 4eb80e225b53bc4d0a3415edcb1be794 396 SUPERFAMILY SSF51905 5 373 8.8E-59 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_04860 4eb80e225b53bc4d0a3415edcb1be794 396 Gene3D G3DSA:3.50.50.60 8 339 1.6E-74 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_04860 4eb80e225b53bc4d0a3415edcb1be794 396 Pfam PF01494 FAD binding domain 5 336 1.0E-23 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_04860 4eb80e225b53bc4d0a3415edcb1be794 396 Gene3D G3DSA:3.30.9.50 41 267 1.6E-74 T 13-10-2018 RAM_04860 4eb80e225b53bc4d0a3415edcb1be794 396 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 144 159 2.5E-15 T 13-10-2018 RAM_04860 4eb80e225b53bc4d0a3415edcb1be794 396 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 2.5E-15 T 13-10-2018 RAM_04860 4eb80e225b53bc4d0a3415edcb1be794 396 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 277 292 2.5E-15 T 13-10-2018 RAM_04860 4eb80e225b53bc4d0a3415edcb1be794 396 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 292 308 2.5E-15 T 13-10-2018 RAM_07955 1a5a425f018509425289a548776a89ce 285 SUPERFAMILY SSF47240 44 279 9.73E-60 T 13-10-2018 IPR009078 Ferritin-like superfamily RAM_07955 1a5a425f018509425289a548776a89ce 285 Pfam PF05138 Phenylacetic acid catabolic protein 43 285 2.0E-75 T 13-10-2018 IPR007814 1,2-phenylacetyl-CoA epoxidase, subunit A/C GO:0010124 RAM_07955 1a5a425f018509425289a548776a89ce 285 Gene3D G3DSA:1.20.1260.10 37 285 2.1E-88 T 13-10-2018 IPR012347 Ferritin-like RAM_07955 1a5a425f018509425289a548776a89ce 285 TIGRFAM TIGR02158 PA_CoA_Oxy3: phenylacetate-CoA oxygenase, PaaI subunit 51 285 8.6E-67 T 13-10-2018 IPR011882 1,2-phenylacetyl-CoA epoxidase, subunit C GO:0010124 RAM_38575 41a3a8a50d86fb2b03e5e73c671a5fd6 117 Pfam PF01479 S4 domain 2 45 3.3E-9 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_38575 41a3a8a50d86fb2b03e5e73c671a5fd6 117 PIRSF PIRSF016821 1 117 7.3E-43 T 13-10-2018 IPR025708 Heat shock protein 15 GO:0003677|GO:0003727|GO:0034605|GO:0043023 RAM_38575 41a3a8a50d86fb2b03e5e73c671a5fd6 117 SUPERFAMILY SSF55174 1 80 1.96E-19 T 13-10-2018 RAM_38575 41a3a8a50d86fb2b03e5e73c671a5fd6 117 SMART SM00363 1 64 0.0074 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_38575 41a3a8a50d86fb2b03e5e73c671a5fd6 117 Gene3D G3DSA:3.10.290.10 1 96 2.6E-26 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 RAM_13215 7eea8f73a9485ef3279cc60c50a93ee5 467 Gene3D G3DSA:1.10.10.10 390 467 2.6E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_13215 7eea8f73a9485ef3279cc60c50a93ee5 467 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 28 467 33.03 T 13-10-2018 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 RAM_13215 7eea8f73a9485ef3279cc60c50a93ee5 467 Pfam PF04545 Sigma-70, region 4 402 455 1.4E-18 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 RAM_13215 7eea8f73a9485ef3279cc60c50a93ee5 467 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 258 271 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RAM_13215 7eea8f73a9485ef3279cc60c50a93ee5 467 Gene3D G3DSA:1.10.10.10 307 382 2.5E-32 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_13215 7eea8f73a9485ef3279cc60c50a93ee5 467 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 230 455 2.5E-35 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_13215 7eea8f73a9485ef3279cc60c50a93ee5 467 SUPERFAMILY SSF88659 366 466 2.62E-26 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_13215 7eea8f73a9485ef3279cc60c50a93ee5 467 PRINTS PR00046 Major sigma-70 factor signature 282 290 2.7E-29 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RAM_13215 7eea8f73a9485ef3279cc60c50a93ee5 467 PRINTS PR00046 Major sigma-70 factor signature 258 271 2.7E-29 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RAM_13215 7eea8f73a9485ef3279cc60c50a93ee5 467 PRINTS PR00046 Major sigma-70 factor signature 442 453 2.7E-29 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RAM_13215 7eea8f73a9485ef3279cc60c50a93ee5 467 PRINTS PR00046 Major sigma-70 factor signature 406 418 2.7E-29 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RAM_13215 7eea8f73a9485ef3279cc60c50a93ee5 467 PRINTS PR00046 Major sigma-70 factor signature 427 442 2.7E-29 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RAM_13215 7eea8f73a9485ef3279cc60c50a93ee5 467 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 427 453 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RAM_13215 7eea8f73a9485ef3279cc60c50a93ee5 467 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 230 466 7.2E-114 T 13-10-2018 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 RAM_13215 7eea8f73a9485ef3279cc60c50a93ee5 467 SUPERFAMILY SSF88946 162 304 1.05E-54 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_13215 7eea8f73a9485ef3279cc60c50a93ee5 467 Pfam PF04542 Sigma-70 region 2 234 303 1.7E-22 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_13215 7eea8f73a9485ef3279cc60c50a93ee5 467 Pfam PF04539 Sigma-70 region 3 313 388 1.5E-28 T 13-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 RAM_13215 7eea8f73a9485ef3279cc60c50a93ee5 467 SUPERFAMILY SSF88659 307 380 1.11E-22 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_13215 7eea8f73a9485ef3279cc60c50a93ee5 467 Pfam PF00140 Sigma-70 factor, region 1.2 165 198 4.0E-16 T 13-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_13215 7eea8f73a9485ef3279cc60c50a93ee5 467 Gene3D G3DSA:1.10.601.10 202 306 6.8E-52 T 13-10-2018 RAM_13215 7eea8f73a9485ef3279cc60c50a93ee5 467 Gene3D G3DSA:1.10.601.10 163 201 2.9E-9 T 13-10-2018 RAM_11475 cb03110883068a797a900f54a3619372 199 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 161 173 - T 13-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 RAM_11475 cb03110883068a797a900f54a3619372 199 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 32 179 5.7E-59 T 13-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 RAM_11475 cb03110883068a797a900f54a3619372 199 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 62 75 - T 13-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 RAM_11475 cb03110883068a797a900f54a3619372 199 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 3 199 41.091 T 13-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 RAM_11475 cb03110883068a797a900f54a3619372 199 Gene3D G3DSA:3.30.230.40 1 90 3.7E-36 T 13-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 RAM_11475 cb03110883068a797a900f54a3619372 199 Gene3D G3DSA:3.30.230.40 91 199 4.4E-35 T 13-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 RAM_11475 cb03110883068a797a900f54a3619372 199 SUPERFAMILY SSF54211 88 184 2.91E-28 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RAM_11475 cb03110883068a797a900f54a3619372 199 SUPERFAMILY SSF54211 3 86 3.67E-32 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RAM_29710 654ee456c322c192e84c5de830e04ce3 117 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 12 85 1.6E-22 T 13-10-2018 IPR025161 Putative transposase IS4/IS5 family RAM_23030 654ee456c322c192e84c5de830e04ce3 117 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 12 85 1.6E-22 T 13-10-2018 IPR025161 Putative transposase IS4/IS5 family RAM_19365 654ee456c322c192e84c5de830e04ce3 117 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 12 85 1.6E-22 T 13-10-2018 IPR025161 Putative transposase IS4/IS5 family RAM_44050 14c2e89c6d5a3f0ec38f6c0747d1b209 506 Gene3D G3DSA:1.20.1250.20 265 464 1.7E-20 T 13-10-2018 RAM_44050 14c2e89c6d5a3f0ec38f6c0747d1b209 506 Gene3D G3DSA:1.20.1720.10 19 256 6.1E-52 T 13-10-2018 RAM_44050 14c2e89c6d5a3f0ec38f6c0747d1b209 506 Pfam PF07690 Major Facilitator Superfamily 24 416 1.9E-53 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_44050 14c2e89c6d5a3f0ec38f6c0747d1b209 506 SUPERFAMILY SSF103473 11 463 1.44E-68 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_44050 14c2e89c6d5a3f0ec38f6c0747d1b209 506 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 21 418 4.4E-77 T 13-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 RAM_07875 40e419bda162d505c87c9784fb9b147f 793 SMART SM00732 327 426 8.1E-40 T 13-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 RAM_07875 40e419bda162d505c87c9784fb9b147f 793 Gene3D G3DSA:3.30.420.140 326 453 1.5E-150 T 13-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 RAM_07875 40e419bda162d505c87c9784fb9b147f 793 SUPERFAMILY SSF47781 562 633 5.56E-19 T 13-10-2018 IPR010994 RuvA domain 2-like RAM_07875 40e419bda162d505c87c9784fb9b147f 793 Gene3D G3DSA:1.10.10.650 2 109 4.7E-38 T 13-10-2018 IPR023319 Tex-like protein, HTH domain superfamily RAM_07875 40e419bda162d505c87c9784fb9b147f 793 Pfam PF16921 Tex protein YqgF-like domain 328 453 9.2E-53 T 13-10-2018 IPR032639 Tex protein, YqgF-like domain RAM_07875 40e419bda162d505c87c9784fb9b147f 793 SUPERFAMILY SSF50249 640 724 1.04E-22 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_07875 40e419bda162d505c87c9784fb9b147f 793 SUPERFAMILY SSF158832 4 322 1.31E-115 T 13-10-2018 RAM_07875 40e419bda162d505c87c9784fb9b147f 793 SUPERFAMILY SSF53098 323 471 1.14E-51 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily RAM_07875 40e419bda162d505c87c9784fb9b147f 793 Pfam PF12836 Helix-hairpin-helix motif 493 557 7.0E-27 T 13-10-2018 RAM_07875 40e419bda162d505c87c9784fb9b147f 793 Gene3D G3DSA:1.10.150.310 501 632 3.6E-48 T 13-10-2018 RAM_07875 40e419bda162d505c87c9784fb9b147f 793 Gene3D G3DSA:1.10.3500.10 112 500 1.5E-150 T 13-10-2018 IPR023323 Tex-like domain superfamily RAM_07875 40e419bda162d505c87c9784fb9b147f 793 Gene3D G3DSA:2.40.50.140 633 727 8.8E-26 T 13-10-2018 RAM_07875 40e419bda162d505c87c9784fb9b147f 793 Pfam PF09371 Tex-like protein N-terminal domain 9 193 2.5E-66 T 13-10-2018 IPR018974 Tex-like protein, N-terminal RAM_07875 40e419bda162d505c87c9784fb9b147f 793 SUPERFAMILY SSF47781 472 560 8.0E-26 T 13-10-2018 IPR010994 RuvA domain 2-like RAM_07875 40e419bda162d505c87c9784fb9b147f 793 Pfam PF00575 S1 RNA binding domain 651 722 1.5E-17 T 13-10-2018 IPR003029 S1 domain GO:0003676 RAM_07875 40e419bda162d505c87c9784fb9b147f 793 SMART SM00316 651 722 9.3E-25 T 13-10-2018 IPR022967 RNA-binding domain, S1 RAM_46975 c5095d61a84245744c8a37ccd2926cc5 364 Gene3D G3DSA:3.40.50.80 235 363 7.4E-28 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RAM_46975 c5095d61a84245744c8a37ccd2926cc5 364 Pfam PF00970 Oxidoreductase FAD-binding domain 137 225 4.6E-10 T 13-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 RAM_46975 c5095d61a84245744c8a37ccd2926cc5 364 SUPERFAMILY SSF46458 1 125 2.21E-30 T 13-10-2018 IPR009050 Globin-like superfamily RAM_46975 c5095d61a84245744c8a37ccd2926cc5 364 Pfam PF00175 Oxidoreductase NAD-binding domain 242 342 6.6E-16 T 13-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 RAM_46975 c5095d61a84245744c8a37ccd2926cc5 364 Gene3D G3DSA:1.10.490.10 1 130 9.3E-34 T 13-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 RAM_46975 c5095d61a84245744c8a37ccd2926cc5 364 SUPERFAMILY SSF52343 236 362 1.44E-28 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RAM_46975 c5095d61a84245744c8a37ccd2926cc5 364 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 162 172 1.2E-5 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RAM_46975 c5095d61a84245744c8a37ccd2926cc5 364 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 241 260 1.2E-5 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RAM_46975 c5095d61a84245744c8a37ccd2926cc5 364 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 266 275 1.2E-5 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RAM_46975 c5095d61a84245744c8a37ccd2926cc5 364 SUPERFAMILY SSF63380 135 227 3.58E-19 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RAM_46975 c5095d61a84245744c8a37ccd2926cc5 364 Pfam PF00042 Globin 1 91 1.2E-7 T 13-10-2018 IPR000971 Globin GO:0020037 RAM_46975 c5095d61a84245744c8a37ccd2926cc5 364 PRINTS PR00410 Phenol hydroxylase reductase family signature 266 275 1.9E-9 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RAM_46975 c5095d61a84245744c8a37ccd2926cc5 364 PRINTS PR00410 Phenol hydroxylase reductase family signature 162 174 1.9E-9 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RAM_46975 c5095d61a84245744c8a37ccd2926cc5 364 PRINTS PR00410 Phenol hydroxylase reductase family signature 241 260 1.9E-9 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RAM_46975 c5095d61a84245744c8a37ccd2926cc5 364 Gene3D G3DSA:2.40.30.10 131 227 1.7E-18 T 13-10-2018 RAM_08230 744fc78b7f3b16a55c1d3907dc56c461 295 SUPERFAMILY SSF46785 6 72 1.15E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_08230 744fc78b7f3b16a55c1d3907dc56c461 295 SMART SM00345 9 68 4.2E-14 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_08230 744fc78b7f3b16a55c1d3907dc56c461 295 Gene3D G3DSA:1.10.357.10 137 293 1.7E-39 T 13-10-2018 RAM_08230 744fc78b7f3b16a55c1d3907dc56c461 295 Gene3D G3DSA:1.10.10.10 5 75 1.6E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_08230 744fc78b7f3b16a55c1d3907dc56c461 295 SUPERFAMILY SSF48498 146 293 3.0E-21 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_08230 744fc78b7f3b16a55c1d3907dc56c461 295 SUPERFAMILY SSF46689 73 135 6.16E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_08230 744fc78b7f3b16a55c1d3907dc56c461 295 Pfam PF02909 Tetracyclin repressor, C-terminal all-alpha domain 139 291 1.7E-19 T 13-10-2018 IPR004111 Tetracycline transcriptional regulator, TetR, C-terminal GO:0045892 RAM_08230 744fc78b7f3b16a55c1d3907dc56c461 295 Pfam PF00392 Bacterial regulatory proteins, gntR family 5 68 1.9E-14 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_08230 744fc78b7f3b16a55c1d3907dc56c461 295 PRINTS PR00400 Tetracycline repressor protein signature 95 118 8.2E-5 T 13-10-2018 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 RAM_08230 744fc78b7f3b16a55c1d3907dc56c461 295 PRINTS PR00400 Tetracycline repressor protein signature 274 288 8.2E-5 T 13-10-2018 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 RAM_08230 744fc78b7f3b16a55c1d3907dc56c461 295 Pfam PF00440 Bacterial regulatory proteins, tetR family 83 127 1.5E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_08230 744fc78b7f3b16a55c1d3907dc56c461 295 Gene3D G3DSA:1.10.10.60 76 136 2.1E-27 T 13-10-2018 RAM_06580 298d747e52db8b862ad35a26ea28869c 828 SUPERFAMILY SSF101904 524 788 7.59E-41 T 13-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal RAM_06580 298d747e52db8b862ad35a26ea28869c 828 Gene3D G3DSA:3.30.1360.40 250 350 7.3E-187 T 13-10-2018 RAM_06580 298d747e52db8b862ad35a26ea28869c 828 Gene3D G3DSA:2.120.10.90 524 788 5.0E-47 T 13-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal RAM_06580 298d747e52db8b862ad35a26ea28869c 828 Gene3D G3DSA:3.90.199.10 47 503 7.3E-187 T 13-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 RAM_06580 298d747e52db8b862ad35a26ea28869c 828 Gene3D G3DSA:1.10.268.10 387 475 7.3E-187 T 13-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 RAM_06580 298d747e52db8b862ad35a26ea28869c 828 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 686 727 5.8 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RAM_06580 298d747e52db8b862ad35a26ea28869c 828 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 750 778 9.0E-4 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RAM_06580 298d747e52db8b862ad35a26ea28869c 828 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 47 485 4.5E-144 T 13-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RAM_06580 298d747e52db8b862ad35a26ea28869c 828 SUPERFAMILY SSF56719 46 504 1.31E-156 T 13-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 RAM_06580 298d747e52db8b862ad35a26ea28869c 828 SMART SM00434 26 482 4.3E-237 T 13-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RAM_13980 93bdc180f92ed550f3ea6fa02c46975a 390 Gene3D G3DSA:3.40.50.300 5 135 2.3E-15 T 13-10-2018 RAM_13980 93bdc180f92ed550f3ea6fa02c46975a 390 SUPERFAMILY SSF52540 7 345 2.85E-22 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_13980 93bdc180f92ed550f3ea6fa02c46975a 390 Gene3D G3DSA:3.40.50.300 187 354 7.0E-6 T 13-10-2018 RAM_13980 93bdc180f92ed550f3ea6fa02c46975a 390 PIRSF PIRSF029347 5 354 3.9E-29 T 13-10-2018 IPR014555 RecF-like RAM_13980 93bdc180f92ed550f3ea6fa02c46975a 390 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 29 104 6.0E-9 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RAM_13980 93bdc180f92ed550f3ea6fa02c46975a 390 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 223 329 1.1E-11 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RAM_02920 6e89c049aa364d6715d2cb07a8989ae8 122 Pfam PF10823 Protein of unknown function (DUF2568) 19 107 7.2E-23 T 13-10-2018 IPR021214 Protein of unknown function DUF2568 RAM_09565 dc3c5291f2dec97e5bd397dbd3548215 259 Pfam PF00005 ABC transporter 19 173 5.1E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_09565 dc3c5291f2dec97e5bd397dbd3548215 259 SMART SM00382 28 221 1.4E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_09565 dc3c5291f2dec97e5bd397dbd3548215 259 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_09565 dc3c5291f2dec97e5bd397dbd3548215 259 Gene3D G3DSA:3.40.50.300 1 240 2.3E-53 T 13-10-2018 RAM_09565 dc3c5291f2dec97e5bd397dbd3548215 259 SUPERFAMILY SSF52540 3 223 2.77E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_34335 0a10b49c211af18725aa1d8e724fcf4c 204 Gene3D G3DSA:3.40.50.1240 1 203 3.8E-68 T 13-10-2018 IPR029033 Histidine phosphatase superfamily RAM_34335 0a10b49c211af18725aa1d8e724fcf4c 204 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 6 199 1.7E-54 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 RAM_34335 0a10b49c211af18725aa1d8e724fcf4c 204 SMART SM00855 5 160 1.2E-18 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 RAM_34335 0a10b49c211af18725aa1d8e724fcf4c 204 SUPERFAMILY SSF53254 3 201 2.13E-58 T 13-10-2018 IPR029033 Histidine phosphatase superfamily RAM_34335 0a10b49c211af18725aa1d8e724fcf4c 204 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 8 17 - T 13-10-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824 RAM_34335 0a10b49c211af18725aa1d8e724fcf4c 204 PIRSF PIRSF000709 1 177 4.9E-16 T 13-10-2018 RAM_25020 5d9097a14219f817f78f2e26c40a9d71 161 SUPERFAMILY SSF53155 4 81 1.18E-18 T 13-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 RAM_25020 5d9097a14219f817f78f2e26c40a9d71 161 Gene3D G3DSA:1.10.10.10 74 158 1.1E-36 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_25020 5d9097a14219f817f78f2e26c40a9d71 161 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 77 156 2.0E-35 T 13-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 RAM_25020 5d9097a14219f817f78f2e26c40a9d71 161 Gene3D G3DSA:3.30.160.70 1 72 1.2E-21 T 13-10-2018 RAM_25020 5d9097a14219f817f78f2e26c40a9d71 161 Pfam PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain 5 74 8.6E-6 T 13-10-2018 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 RAM_25020 5d9097a14219f817f78f2e26c40a9d71 161 SUPERFAMILY SSF46767 76 157 1.14E-32 T 13-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 RAM_25020 5d9097a14219f817f78f2e26c40a9d71 161 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 78 157 6.2E-33 T 13-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 RAM_25020 5d9097a14219f817f78f2e26c40a9d71 161 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 127 133 - T 13-10-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 RAM_25020 5d9097a14219f817f78f2e26c40a9d71 161 Hamap MF_00772 Methylated-DNA--protein-cysteine methyltransferase [ogt]. 6 157 43.249 T 13-10-2018 IPR023546 Methylated-DNA--protein-cysteine methyltransferase GO:0003824|GO:0006281 RAM_31100 d4c9b3c5a5258dcfd9655ee8b6a9e2aa 375 Gene3D G3DSA:2.130.10.10 41 375 7.6E-91 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RAM_31100 d4c9b3c5a5258dcfd9655ee8b6a9e2aa 375 SUPERFAMILY SSF51004 65 355 5.36E-46 T 13-10-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily RAM_31100 d4c9b3c5a5258dcfd9655ee8b6a9e2aa 375 Pfam PF10282 Lactonase, 7-bladed beta-propeller 44 374 8.5E-88 T 13-10-2018 IPR019405 Lactonase, 7-bladed beta propeller RAM_09395 f3d696d6fe699bc6d94c9f130e7169c3 698 Gene3D G3DSA:2.70.98.60 3 284 8.9E-72 T 13-10-2018 IPR038417 Alpha-galactosidase, N-terminal domain superfamily KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_09395 f3d696d6fe699bc6d94c9f130e7169c3 698 SUPERFAMILY SSF51445 299 625 2.18E-99 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_09395 f3d696d6fe699bc6d94c9f130e7169c3 698 PRINTS PR00743 Glycosyl hydrolase family 36 signature 267 287 7.4E-52 T 13-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_09395 f3d696d6fe699bc6d94c9f130e7169c3 698 PRINTS PR00743 Glycosyl hydrolase family 36 signature 439 454 7.4E-52 T 13-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_09395 f3d696d6fe699bc6d94c9f130e7169c3 698 PRINTS PR00743 Glycosyl hydrolase family 36 signature 517 533 7.4E-52 T 13-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_09395 f3d696d6fe699bc6d94c9f130e7169c3 698 PRINTS PR00743 Glycosyl hydrolase family 36 signature 303 317 7.4E-52 T 13-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_09395 f3d696d6fe699bc6d94c9f130e7169c3 698 PRINTS PR00743 Glycosyl hydrolase family 36 signature 216 231 7.4E-52 T 13-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_09395 f3d696d6fe699bc6d94c9f130e7169c3 698 PRINTS PR00743 Glycosyl hydrolase family 36 signature 331 346 7.4E-52 T 13-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_09395 f3d696d6fe699bc6d94c9f130e7169c3 698 PRINTS PR00743 Glycosyl hydrolase family 36 signature 381 403 7.4E-52 T 13-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_09395 f3d696d6fe699bc6d94c9f130e7169c3 698 PRINTS PR00743 Glycosyl hydrolase family 36 signature 492 508 7.4E-52 T 13-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_09395 f3d696d6fe699bc6d94c9f130e7169c3 698 Pfam PF02065 Melibiase 264 607 1.8E-119 T 13-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_09395 f3d696d6fe699bc6d94c9f130e7169c3 698 Gene3D G3DSA:3.20.20.70 286 604 3.1E-123 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_09395 f3d696d6fe699bc6d94c9f130e7169c3 698 Pfam PF16875 Glycosyl hydrolase family 36 N-terminal domain 31 260 6.0E-53 T 13-10-2018 IPR031704 Glycosyl hydrolase family 36, N-terminal KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_09395 f3d696d6fe699bc6d94c9f130e7169c3 698 PIRSF PIRSF005536 2 697 2.7E-180 T 13-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_09395 f3d696d6fe699bc6d94c9f130e7169c3 698 Gene3D G3DSA:2.60.40.1180 605 698 5.8E-7 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta RAM_14215 ec3bbd5eb4dacc79683a7a70ffde4f6e 393 Pfam PF06224 Winged helix DNA-binding domain 31 373 2.0E-59 T 13-10-2018 IPR009351 Protein of unknown function DUF1006 RAM_30485 f5a12f6c394f044a0aa2db463d9ef86a 403 Gene3D G3DSA:1.20.1250.20 202 398 1.4E-12 T 13-10-2018 RAM_30485 f5a12f6c394f044a0aa2db463d9ef86a 403 Pfam PF07690 Major Facilitator Superfamily 255 399 1.4E-8 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_30485 f5a12f6c394f044a0aa2db463d9ef86a 403 Pfam PF07690 Major Facilitator Superfamily 20 238 4.7E-20 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_30485 f5a12f6c394f044a0aa2db463d9ef86a 403 Gene3D G3DSA:1.20.1250.20 8 201 1.2E-19 T 13-10-2018 RAM_30485 f5a12f6c394f044a0aa2db463d9ef86a 403 SUPERFAMILY SSF103473 12 397 2.35E-42 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_07690 2a24ab52aca6656b780a0dbbbcb4eab2 512 SUPERFAMILY SSF52540 274 487 1.81E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_07690 2a24ab52aca6656b780a0dbbbcb4eab2 512 Gene3D G3DSA:3.40.50.300 2 264 8.8E-54 T 13-10-2018 RAM_07690 2a24ab52aca6656b780a0dbbbcb4eab2 512 SMART SM00382 32 232 5.7E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_07690 2a24ab52aca6656b780a0dbbbcb4eab2 512 SMART SM00382 283 477 4.5E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_07690 2a24ab52aca6656b780a0dbbbcb4eab2 512 Pfam PF00005 ABC transporter 23 176 5.8E-26 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_07690 2a24ab52aca6656b780a0dbbbcb4eab2 512 Gene3D G3DSA:3.40.50.300 268 501 3.2E-48 T 13-10-2018 RAM_07690 2a24ab52aca6656b780a0dbbbcb4eab2 512 ProSitePatterns PS00211 ABC transporters family signature. 401 415 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_07690 2a24ab52aca6656b780a0dbbbcb4eab2 512 SUPERFAMILY SSF52540 4 233 1.38E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_07690 2a24ab52aca6656b780a0dbbbcb4eab2 512 Pfam PF00005 ABC transporter 276 428 2.9E-21 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_38825 0b15f432489e7150252aa15c9e2fc48c 373 SUPERFAMILY SSF50022 12 150 6.68E-43 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RAM_38825 0b15f432489e7150252aa15c9e2fc48c 373 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 51 66 2.1E-21 T 13-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 RAM_38825 0b15f432489e7150252aa15c9e2fc48c 373 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 94 114 2.1E-21 T 13-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 RAM_38825 0b15f432489e7150252aa15c9e2fc48c 373 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 21 46 2.1E-21 T 13-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 RAM_38825 0b15f432489e7150252aa15c9e2fc48c 373 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 72 92 2.1E-21 T 13-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 RAM_38825 0b15f432489e7150252aa15c9e2fc48c 373 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 179 201 2.1E-21 T 13-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 RAM_38825 0b15f432489e7150252aa15c9e2fc48c 373 SUPERFAMILY SSF55961 171 369 1.18E-43 T 13-10-2018 RAM_38825 0b15f432489e7150252aa15c9e2fc48c 373 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 181 371 1.1E-43 T 13-10-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0044237|GO:0051537|GO:0055114 RAM_38825 0b15f432489e7150252aa15c9e2fc48c 373 Gene3D G3DSA:3.90.380.10 221 373 1.8E-31 T 13-10-2018 RAM_38825 0b15f432489e7150252aa15c9e2fc48c 373 Gene3D G3DSA:2.102.10.10 35 160 4.6E-36 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RAM_38825 0b15f432489e7150252aa15c9e2fc48c 373 Pfam PF00355 Rieske [2Fe-2S] domain 37 119 8.7E-19 T 13-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RAM_17105 f6f081f01f6bd5932619933108797ee8 415 Pfam PF13556 PucR C-terminal helix-turn-helix domain 344 401 4.5E-18 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain RAM_17105 f6f081f01f6bd5932619933108797ee8 415 Gene3D G3DSA:1.10.10.2840 276 406 7.8E-19 T 13-10-2018 RAM_08025 ba370200d930b973a00b86b6300081b5 241 Gene3D G3DSA:2.40.100.10 58 231 1.5E-38 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily RAM_08025 ba370200d930b973a00b86b6300081b5 241 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 69 214 2.5E-24 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 RAM_08025 ba370200d930b973a00b86b6300081b5 241 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 161 176 5.7E-7 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 RAM_08025 ba370200d930b973a00b86b6300081b5 241 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 81 96 5.7E-7 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 RAM_08025 ba370200d930b973a00b86b6300081b5 241 SUPERFAMILY SSF50891 68 215 6.43E-33 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily RAM_17360 e5f75f3ffe6e50b525faeea0496d1d45 740 SUPERFAMILY SSF49785 620 739 1.91E-17 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_17360 e5f75f3ffe6e50b525faeea0496d1d45 740 Pfam PF07944 Beta-L-arabinofuranosidase, GH127 52 554 1.1E-145 T 13-10-2018 IPR012878 Beta-L-arabinofuranosidase, GH127 RAM_17360 e5f75f3ffe6e50b525faeea0496d1d45 740 Gene3D G3DSA:2.60.120.260 613 740 5.6E-34 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_17360 e5f75f3ffe6e50b525faeea0496d1d45 740 SUPERFAMILY SSF48208 108 392 2.18E-15 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_15325 b51fd40a55f71ec6ed3ecb66e30fa14a 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 150 226 2.6E-25 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_15325 b51fd40a55f71ec6ed3ecb66e30fa14a 229 SMART SM00862 150 226 3.3E-24 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_15325 b51fd40a55f71ec6ed3ecb66e30fa14a 229 Gene3D G3DSA:1.10.10.10 131 227 4.6E-32 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_15325 b51fd40a55f71ec6ed3ecb66e30fa14a 229 Pfam PF00072 Response regulator receiver domain 4 112 5.8E-30 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_15325 b51fd40a55f71ec6ed3ecb66e30fa14a 229 SMART SM00448 2 112 1.4E-44 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_15325 b51fd40a55f71ec6ed3ecb66e30fa14a 229 SUPERFAMILY SSF52172 4 177 2.13E-42 T 13-10-2018 IPR011006 CheY-like superfamily RAM_15325 b51fd40a55f71ec6ed3ecb66e30fa14a 229 Gene3D G3DSA:3.40.50.2300 2 130 2.5E-39 T 13-10-2018 RAM_23200 0235233dea0e9506b18e57b1ff81e10b 116 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 9 112 5.2E-5 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RAM_23200 0235233dea0e9506b18e57b1ff81e10b 116 Gene3D G3DSA:3.10.180.10 2 116 1.4E-26 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_23200 0235233dea0e9506b18e57b1ff81e10b 116 SUPERFAMILY SSF54593 5 116 5.77E-19 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_46030 878f97eb460a0a76afe3af97599205c5 397 Gene3D G3DSA:3.40.190.10 1 144 7.6E-6 T 13-10-2018 RAM_46030 878f97eb460a0a76afe3af97599205c5 397 Pfam PF13416 Bacterial extracellular solute-binding protein 54 344 2.6E-27 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein RAM_46030 878f97eb460a0a76afe3af97599205c5 397 SUPERFAMILY SSF53850 37 364 5.67E-26 T 13-10-2018 RAM_46030 878f97eb460a0a76afe3af97599205c5 397 Gene3D G3DSA:3.40.190.10 160 307 2.5E-7 T 13-10-2018 RAM_42340 6acc872e08318fc15f7a9115c61c72f9 588 Gene3D G3DSA:3.40.50.300 262 518 2.1E-57 T 13-10-2018 RAM_42340 6acc872e08318fc15f7a9115c61c72f9 588 Gene3D G3DSA:3.40.50.300 1 234 8.0E-57 T 13-10-2018 RAM_42340 6acc872e08318fc15f7a9115c61c72f9 588 SMART SM00382 29 205 4.4E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_42340 6acc872e08318fc15f7a9115c61c72f9 588 SMART SM00382 309 478 1.0E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_42340 6acc872e08318fc15f7a9115c61c72f9 588 SUPERFAMILY SSF52540 273 484 4.36E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_42340 6acc872e08318fc15f7a9115c61c72f9 588 Pfam PF16326 ABC transporter C-terminal domain 524 585 1.9E-8 T 13-10-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 RAM_42340 6acc872e08318fc15f7a9115c61c72f9 588 SUPERFAMILY SSF52540 5 202 1.63E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_42340 6acc872e08318fc15f7a9115c61c72f9 588 ProSitePatterns PS00211 ABC transporters family signature. 406 420 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_42340 6acc872e08318fc15f7a9115c61c72f9 588 Pfam PF00005 ABC transporter 20 153 6.8E-23 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_42340 6acc872e08318fc15f7a9115c61c72f9 588 Pfam PF00005 ABC transporter 300 434 3.9E-21 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_42340 6acc872e08318fc15f7a9115c61c72f9 588 ProSitePatterns PS00211 ABC transporters family signature. 125 139 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_42340 6acc872e08318fc15f7a9115c61c72f9 588 Pfam PF12848 ABC transporter 192 266 1.6E-7 T 13-10-2018 IPR032781 ABC-transporter extension domain RAM_13540 342146301599407bd39a1ec59633a184 123 ProSitePatterns PS00194 Thioredoxin family active site. 22 40 - T 13-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 RAM_13540 342146301599407bd39a1ec59633a184 123 TIGRFAM TIGR01068 thioredoxin: thioredoxin 7 102 8.9E-29 T 13-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 RAM_13540 342146301599407bd39a1ec59633a184 123 PRINTS PR00421 Thioredoxin family signature 29 38 1.5E-7 T 13-10-2018 RAM_13540 342146301599407bd39a1ec59633a184 123 PRINTS PR00421 Thioredoxin family signature 21 29 1.5E-7 T 13-10-2018 RAM_13540 342146301599407bd39a1ec59633a184 123 PRINTS PR00421 Thioredoxin family signature 68 79 1.5E-7 T 13-10-2018 RAM_13540 342146301599407bd39a1ec59633a184 123 Gene3D G3DSA:3.40.30.10 1 118 3.2E-33 T 13-10-2018 RAM_13540 342146301599407bd39a1ec59633a184 123 Pfam PF00085 Thioredoxin 3 102 2.9E-28 T 13-10-2018 IPR013766 Thioredoxin domain GO:0045454 RAM_13540 342146301599407bd39a1ec59633a184 123 PIRSF PIRSF000077 1 104 3.0E-27 T 13-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 RAM_13540 342146301599407bd39a1ec59633a184 123 SUPERFAMILY SSF52833 3 103 5.79E-34 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RAM_36230 8ef5f0958bc8b0cdc4ff81122a971d2d 495 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 8 22 - T 13-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RAM_36230 8ef5f0958bc8b0cdc4ff81122a971d2d 495 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 101 133 - T 13-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RAM_36230 8ef5f0958bc8b0cdc4ff81122a971d2d 495 Gene3D G3DSA:3.40.1010.10 251 366 1.1E-27 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 RAM_36230 8ef5f0958bc8b0cdc4ff81122a971d2d 495 SUPERFAMILY SSF53790 1 236 1.57E-46 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 RAM_36230 8ef5f0958bc8b0cdc4ff81122a971d2d 495 SUPERFAMILY SSF53790 255 495 3.14E-53 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 RAM_36230 8ef5f0958bc8b0cdc4ff81122a971d2d 495 TIGRFAM TIGR01466 cobJ_cbiH: precorrin-3B C17-methyltransferase 258 495 4.3E-85 T 13-10-2018 IPR006363 Precorrin-3B C17-methyltransferase domain GO:0008168|GO:0009236 RAM_36230 8ef5f0958bc8b0cdc4ff81122a971d2d 495 TIGRFAM TIGR01467 cobI_cbiL: precorrin-2 C(20)-methyltransferase 3 234 4.6E-62 T 13-10-2018 IPR006364 Precorrin-2 C(20)-methyltransferase domain GO:0008757|GO:0009236 RAM_36230 8ef5f0958bc8b0cdc4ff81122a971d2d 495 Gene3D G3DSA:3.40.1010.10 2 134 3.9E-33 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 RAM_36230 8ef5f0958bc8b0cdc4ff81122a971d2d 495 Gene3D G3DSA:3.30.950.10 136 237 7.4E-14 T 13-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 RAM_36230 8ef5f0958bc8b0cdc4ff81122a971d2d 495 Gene3D G3DSA:3.30.950.10 367 495 2.0E-52 T 13-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 RAM_36230 8ef5f0958bc8b0cdc4ff81122a971d2d 495 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 4 216 3.1E-46 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 RAM_36230 8ef5f0958bc8b0cdc4ff81122a971d2d 495 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 258 465 2.7E-38 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 RAM_33865 4e5c1dc42cca6ec98b831cc23d180ce0 201 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 141 155 9.2E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_33865 4e5c1dc42cca6ec98b831cc23d180ce0 201 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 171 183 9.2E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_33865 4e5c1dc42cca6ec98b831cc23d180ce0 201 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 155 171 9.2E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_33865 4e5c1dc42cca6ec98b831cc23d180ce0 201 SUPERFAMILY SSF46894 131 201 1.97E-17 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_33865 4e5c1dc42cca6ec98b831cc23d180ce0 201 SUPERFAMILY SSF52172 2 129 1.08E-32 T 13-10-2018 IPR011006 CheY-like superfamily RAM_33865 4e5c1dc42cca6ec98b831cc23d180ce0 201 SMART SM00448 2 115 1.2E-30 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_33865 4e5c1dc42cca6ec98b831cc23d180ce0 201 Gene3D G3DSA:3.40.50.12740 2 200 4.6E-60 T 13-10-2018 RAM_33865 4e5c1dc42cca6ec98b831cc23d180ce0 201 SMART SM00421 138 195 2.1E-18 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_33865 4e5c1dc42cca6ec98b831cc23d180ce0 201 Pfam PF00196 Bacterial regulatory proteins, luxR family 140 195 6.6E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_33865 4e5c1dc42cca6ec98b831cc23d180ce0 201 Pfam PF00072 Response regulator receiver domain 4 116 4.5E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_33865 4e5c1dc42cca6ec98b831cc23d180ce0 201 ProSitePatterns PS00622 LuxR-type HTH domain signature. 155 182 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_16430 0526e86657cae57b223415f3ae063f83 204 Pfam PF01381 Helix-turn-helix 21 75 3.3E-11 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_16430 0526e86657cae57b223415f3ae063f83 204 Gene3D G3DSA:1.10.260.40 5 80 2.8E-16 T 13-10-2018 RAM_16430 0526e86657cae57b223415f3ae063f83 204 SUPERFAMILY SSF47413 15 78 3.66E-14 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_16430 0526e86657cae57b223415f3ae063f83 204 Gene3D G3DSA:2.60.120.10 108 196 6.2E-13 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_16430 0526e86657cae57b223415f3ae063f83 204 SUPERFAMILY SSF51182 26 184 2.0E-13 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RAM_16430 0526e86657cae57b223415f3ae063f83 204 Pfam PF07883 Cupin domain 130 177 1.8E-8 T 13-10-2018 IPR013096 Cupin 2, conserved barrel RAM_16430 0526e86657cae57b223415f3ae063f83 204 SMART SM00530 20 75 4.9E-13 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_41060 c2fac739a75ce1b5cf04962b57cc3079 578 SMART SM00909 211 299 1.4E-7 T 13-10-2018 IPR019606 GerMN domain RAM_41060 c2fac739a75ce1b5cf04962b57cc3079 578 Pfam PF10647 Lipoprotein LpqB beta-propeller domain 334 577 2.0E-54 T 13-10-2018 IPR018910 Lipoprotein LpqB, beta-propeller domain, C-terminal RAM_41060 c2fac739a75ce1b5cf04962b57cc3079 578 SUPERFAMILY SSF82171 336 550 2.94E-6 T 13-10-2018 RAM_02270 f052cfecf07214e910a3ffa03998a93c 335 Gene3D G3DSA:3.40.50.720 125 302 1.9E-133 T 13-10-2018 RAM_02270 f052cfecf07214e910a3ffa03998a93c 335 SMART SM00829 18 331 1.3E-8 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_02270 f052cfecf07214e910a3ffa03998a93c 335 Pfam PF16884 N-terminal domain of oxidoreductase 6 111 8.4E-40 T 13-10-2018 RAM_02270 f052cfecf07214e910a3ffa03998a93c 335 Gene3D G3DSA:3.90.180.10 9 331 1.9E-133 T 13-10-2018 RAM_02270 f052cfecf07214e910a3ffa03998a93c 335 SUPERFAMILY SSF51735 122 298 3.29E-51 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_02270 f052cfecf07214e910a3ffa03998a93c 335 Pfam PF00107 Zinc-binding dehydrogenase 157 285 2.1E-24 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RAM_02270 f052cfecf07214e910a3ffa03998a93c 335 SUPERFAMILY SSF50129 2 139 2.97E-40 T 13-10-2018 IPR011032 GroES-like superfamily RAM_25925 ec27630dcf1a89b1a42fa2972d93d42c 312 Gene3D G3DSA:3.10.180.10 4 123 8.9E-40 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_25925 ec27630dcf1a89b1a42fa2972d93d42c 312 Gene3D G3DSA:3.10.180.10 135 291 2.6E-41 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_25925 ec27630dcf1a89b1a42fa2972d93d42c 312 SUPERFAMILY SSF54593 6 291 6.98E-41 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_25925 ec27630dcf1a89b1a42fa2972d93d42c 312 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 9 120 9.8E-5 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RAM_25925 ec27630dcf1a89b1a42fa2972d93d42c 312 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 142 256 1.8E-16 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RAM_47565 80292a7f185079983b61d149df6a3258 435 SUPERFAMILY SSF51556 58 354 1.0E-84 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_47565 80292a7f185079983b61d149df6a3258 435 SUPERFAMILY SSF51338 22 77 1.03E-5 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_47565 80292a7f185079983b61d149df6a3258 435 SUPERFAMILY SSF51338 317 434 6.14E-21 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_47565 80292a7f185079983b61d149df6a3258 435 Gene3D G3DSA:2.30.40.10 10 424 8.1E-122 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_47565 80292a7f185079983b61d149df6a3258 435 Gene3D G3DSA:3.20.20.140 59 348 8.1E-122 T 13-10-2018 RAM_47565 80292a7f185079983b61d149df6a3258 435 Pfam PF01979 Amidohydrolase family 55 408 2.5E-59 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RAM_41070 bbdc7866e7d1b602014aff2b01639148 225 SMART SM00448 3 113 2.6E-46 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_41070 bbdc7866e7d1b602014aff2b01639148 225 Gene3D G3DSA:3.40.50.2300 1 125 2.8E-39 T 13-10-2018 RAM_41070 bbdc7866e7d1b602014aff2b01639148 225 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 221 6.4E-26 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_41070 bbdc7866e7d1b602014aff2b01639148 225 Pfam PF00072 Response regulator receiver domain 5 114 1.3E-30 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_41070 bbdc7866e7d1b602014aff2b01639148 225 SMART SM00862 146 222 1.1E-24 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_41070 bbdc7866e7d1b602014aff2b01639148 225 SUPERFAMILY SSF52172 3 179 9.39E-45 T 13-10-2018 IPR011006 CheY-like superfamily RAM_41070 bbdc7866e7d1b602014aff2b01639148 225 Gene3D G3DSA:1.10.10.10 126 225 3.6E-39 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_16735 044be6e82500da3846cea01b8fca9942 361 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 37 213 3.2E-18 T 13-10-2018 IPR013830 SGNH hydrolase-type esterase domain RAM_16735 044be6e82500da3846cea01b8fca9942 361 Pfam PF00652 Ricin-type beta-trefoil lectin domain 240 355 1.2E-21 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_16735 044be6e82500da3846cea01b8fca9942 361 SUPERFAMILY SSF50370 240 357 5.35E-30 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_16735 044be6e82500da3846cea01b8fca9942 361 SMART SM00458 236 358 3.2E-19 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_16735 044be6e82500da3846cea01b8fca9942 361 Gene3D G3DSA:2.80.10.50 240 357 4.8E-30 T 13-10-2018 RAM_16735 044be6e82500da3846cea01b8fca9942 361 Gene3D G3DSA:3.40.50.1110 28 237 9.0E-71 T 13-10-2018 IPR036514 SGNH hydrolase superfamily RAM_16735 044be6e82500da3846cea01b8fca9942 361 SUPERFAMILY SSF52266 23 223 2.11E-32 T 13-10-2018 RAM_34020 79d5fa467b9198690af7341e1a1f0e5c 129 Gene3D G3DSA:3.30.1310.10 1 97 8.7E-8 T 13-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily RAM_34020 79d5fa467b9198690af7341e1a1f0e5c 129 SUPERFAMILY SSF82607 3 84 6.15E-8 T 13-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily RAM_34020 79d5fa467b9198690af7341e1a1f0e5c 129 Pfam PF02575 YbaB/EbfC DNA-binding family 3 84 2.9E-11 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family RAM_33510 1701a895b6c7b966605da902f3ee456f 256 Gene3D G3DSA:3.40.50.300 3 246 3.9E-66 T 13-10-2018 RAM_33510 1701a895b6c7b966605da902f3ee456f 256 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_33510 1701a895b6c7b966605da902f3ee456f 256 SUPERFAMILY SSF52540 3 226 1.33E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_33510 1701a895b6c7b966605da902f3ee456f 256 Pfam PF00005 ABC transporter 19 167 3.9E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_33510 1701a895b6c7b966605da902f3ee456f 256 SMART SM00382 27 212 2.5E-19 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_25045 a333959341ce0c000e76620450323e7d 301 Pfam PF09754 PAC2 family 27 245 3.6E-53 T 13-10-2018 IPR019151 Proteasome assembly chaperone 2 RAM_25045 a333959341ce0c000e76620450323e7d 301 Gene3D G3DSA:3.40.50.10900 21 225 2.2E-92 T 13-10-2018 IPR038389 Proteasome assembly chaperone 2 superfamily RAM_25045 a333959341ce0c000e76620450323e7d 301 PIRSF PIRSF028754 5 298 1.2E-109 T 13-10-2018 IPR008492 Protein of unknown function DUF774 RAM_25045 a333959341ce0c000e76620450323e7d 301 Gene3D G3DSA:1.10.287.100 226 264 2.2E-92 T 13-10-2018 RAM_25045 a333959341ce0c000e76620450323e7d 301 SUPERFAMILY SSF159659 14 266 1.57E-89 T 13-10-2018 RAM_28940 04a5195b913eadb8b9cf1236d55991a3 231 Gene3D G3DSA:1.10.10.10 134 230 1.0E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_28940 04a5195b913eadb8b9cf1236d55991a3 231 Pfam PF00072 Response regulator receiver domain 4 117 3.6E-30 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_28940 04a5195b913eadb8b9cf1236d55991a3 231 SMART SM00862 154 227 1.7E-25 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_28940 04a5195b913eadb8b9cf1236d55991a3 231 Pfam PF00486 Transcriptional regulatory protein, C terminal 154 227 1.8E-21 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_28940 04a5195b913eadb8b9cf1236d55991a3 231 SMART SM00448 1 116 4.0E-46 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_28940 04a5195b913eadb8b9cf1236d55991a3 231 SUPERFAMILY SSF52172 1 180 7.97E-43 T 13-10-2018 IPR011006 CheY-like superfamily RAM_28940 04a5195b913eadb8b9cf1236d55991a3 231 Gene3D G3DSA:3.40.50.2300 1 128 2.8E-39 T 13-10-2018 RAM_00390 4c4c3c8744e0910e483f6c4a977a6dae 287 PIRSF PIRSF015582 1 287 1.8E-85 T 13-10-2018 IPR011206 Citrate lyase beta subunit-like RAM_00390 4c4c3c8744e0910e483f6c4a977a6dae 287 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 8 222 5.9E-49 T 13-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 RAM_00390 4c4c3c8744e0910e483f6c4a977a6dae 287 Gene3D G3DSA:3.20.20.60 1 287 1.0E-99 T 13-10-2018 RAM_00390 4c4c3c8744e0910e483f6c4a977a6dae 287 SUPERFAMILY SSF51621 5 232 2.86E-69 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 RAM_00835 7a2427e745251451df6ab791cb5e3f45 1057 SUPERFAMILY SSF90123 549 840 9.81E-28 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RAM_00835 7a2427e745251451df6ab791cb5e3f45 1057 Pfam PF00005 ABC transporter 871 1003 8.0E-22 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_00835 7a2427e745251451df6ab791cb5e3f45 1057 ProSitePatterns PS00211 ABC transporters family signature. 973 987 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_00835 7a2427e745251451df6ab791cb5e3f45 1057 Gene3D G3DSA:3.40.50.300 332 520 1.3E-40 T 13-10-2018 RAM_00835 7a2427e745251451df6ab791cb5e3f45 1057 Gene3D G3DSA:1.20.1560.10 545 842 2.4E-17 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RAM_00835 7a2427e745251451df6ab791cb5e3f45 1057 Pfam PF00664 ABC transporter transmembrane region 26 272 5.9E-23 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 RAM_00835 7a2427e745251451df6ab791cb5e3f45 1057 SUPERFAMILY SSF52540 847 1052 2.89E-47 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_00835 7a2427e745251451df6ab791cb5e3f45 1057 Pfam PF00005 ABC transporter 355 483 1.3E-20 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_00835 7a2427e745251451df6ab791cb5e3f45 1057 SUPERFAMILY SSF52540 329 515 6.36E-37 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_00835 7a2427e745251451df6ab791cb5e3f45 1057 SUPERFAMILY SSF90123 20 322 1.05E-44 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RAM_00835 7a2427e745251451df6ab791cb5e3f45 1057 TIGRFAM TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit 549 1032 4.7E-125 T 13-10-2018 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC GO:0016021|GO:0034775|GO:0042626|GO:0045454 RAM_00835 7a2427e745251451df6ab791cb5e3f45 1057 SMART SM00382 880 1049 3.8E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_00835 7a2427e745251451df6ab791cb5e3f45 1057 SMART SM00382 360 521 6.6E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_00835 7a2427e745251451df6ab791cb5e3f45 1057 ProSitePatterns PS00211 ABC transporters family signature. 452 466 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_00835 7a2427e745251451df6ab791cb5e3f45 1057 Gene3D G3DSA:1.20.1560.10 4 325 8.6E-41 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RAM_00835 7a2427e745251451df6ab791cb5e3f45 1057 Gene3D G3DSA:3.40.50.300 844 1057 3.0E-54 T 13-10-2018 RAM_23795 da45a7b8f5df3b9bede1879cbc03de86 445 Pfam PF00083 Sugar (and other) transporter 25 236 3.7E-23 T 13-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 RAM_23795 da45a7b8f5df3b9bede1879cbc03de86 445 Pfam PF07690 Major Facilitator Superfamily 297 431 2.2E-9 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_23795 da45a7b8f5df3b9bede1879cbc03de86 445 SUPERFAMILY SSF103473 21 434 3.92E-61 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_23795 da45a7b8f5df3b9bede1879cbc03de86 445 Gene3D G3DSA:1.20.1250.20 21 443 1.8E-61 T 13-10-2018 RAM_23795 da45a7b8f5df3b9bede1879cbc03de86 445 ProSitePatterns PS00217 Sugar transport proteins signature 2. 134 159 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RAM_13735 c0ad8d571a4aa9bfcf8a99dd9c3572d2 591 Gene3D G3DSA:3.30.930.10 117 581 7.9E-179 T 13-10-2018 RAM_13735 c0ad8d571a4aa9bfcf8a99dd9c3572d2 591 Gene3D G3DSA:3.30.1360.30 272 411 7.9E-179 T 13-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 RAM_13735 c0ad8d571a4aa9bfcf8a99dd9c3572d2 591 PRINTS PR01042 Aspartyl-tRNA synthetase signature 474 490 3.3E-25 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 RAM_13735 c0ad8d571a4aa9bfcf8a99dd9c3572d2 591 PRINTS PR01042 Aspartyl-tRNA synthetase signature 208 221 3.3E-25 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 RAM_13735 c0ad8d571a4aa9bfcf8a99dd9c3572d2 591 PRINTS PR01042 Aspartyl-tRNA synthetase signature 518 532 3.3E-25 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 RAM_13735 c0ad8d571a4aa9bfcf8a99dd9c3572d2 591 PRINTS PR01042 Aspartyl-tRNA synthetase signature 191 203 3.3E-25 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 RAM_13735 c0ad8d571a4aa9bfcf8a99dd9c3572d2 591 Pfam PF01336 OB-fold nucleic acid binding domain 19 101 5.1E-16 T 13-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 RAM_13735 c0ad8d571a4aa9bfcf8a99dd9c3572d2 591 Gene3D G3DSA:2.40.50.140 1 107 5.7E-33 T 13-10-2018 RAM_13735 c0ad8d571a4aa9bfcf8a99dd9c3572d2 591 Pfam PF02938 GAD domain 313 393 4.0E-13 T 13-10-2018 IPR029351 GAD domain Reactome: R-HSA-379726 RAM_13735 c0ad8d571a4aa9bfcf8a99dd9c3572d2 591 Pfam PF00152 tRNA synthetases class II (D, K and N) 119 557 7.9E-99 T 13-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 RAM_13735 c0ad8d571a4aa9bfcf8a99dd9c3572d2 591 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 3 581 1.7E-208 T 13-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 RAM_13735 c0ad8d571a4aa9bfcf8a99dd9c3572d2 591 SUPERFAMILY SSF55261 289 411 2.83E-33 T 13-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 RAM_13735 c0ad8d571a4aa9bfcf8a99dd9c3572d2 591 SUPERFAMILY SSF50249 2 104 6.67E-29 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_13735 c0ad8d571a4aa9bfcf8a99dd9c3572d2 591 SUPERFAMILY SSF55681 113 583 3.32E-100 T 13-10-2018 RAM_13735 c0ad8d571a4aa9bfcf8a99dd9c3572d2 591 Hamap MF_00044 Aspartate--tRNA(Asp/Asn) ligase [aspS]. 2 584 31.888 T 13-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 RAM_00795 bb85645947a90b4b273d83ecefb924fc 390 Pfam PF04209 homogentisate 1,2-dioxygenase 114 371 6.4E-16 T 13-10-2018 IPR005708 Homogentisate 1,2-dioxygenase GO:0004411|GO:0006559|GO:0006570|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5|Reactome: R-HSA-71182 RAM_00795 bb85645947a90b4b273d83ecefb924fc 390 SUPERFAMILY SSF51182 6 384 9.88E-93 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RAM_00795 bb85645947a90b4b273d83ecefb924fc 390 Gene3D G3DSA:2.60.120.10 85 172 4.2E-8 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_00795 bb85645947a90b4b273d83ecefb924fc 390 Gene3D G3DSA:2.60.120.10 266 363 7.5E-7 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_35385 355601828e2bf4ec91dea4f04e7bde77 698 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 414 420 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 RAM_35385 355601828e2bf4ec91dea4f04e7bde77 698 Gene3D G3DSA:2.70.150.20 205 317 2.4E-36 T 13-10-2018 RAM_35385 355601828e2bf4ec91dea4f04e7bde77 698 Pfam PF00122 E1-E2 ATPase 215 390 1.5E-52 T 13-10-2018 RAM_35385 355601828e2bf4ec91dea4f04e7bde77 698 Gene3D G3DSA:3.30.70.100 3 79 6.1E-19 T 13-10-2018 RAM_35385 355601828e2bf4ec91dea4f04e7bde77 698 Gene3D G3DSA:3.40.50.1000 393 644 1.8E-76 T 13-10-2018 IPR023214 HAD superfamily RAM_35385 355601828e2bf4ec91dea4f04e7bde77 698 SUPERFAMILY SSF56784 410 692 1.04E-51 T 13-10-2018 IPR036412 HAD-like superfamily RAM_35385 355601828e2bf4ec91dea4f04e7bde77 698 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 131 695 7.0E-157 T 13-10-2018 RAM_35385 355601828e2bf4ec91dea4f04e7bde77 698 Pfam PF00403 Heavy-metal-associated domain 14 71 1.1E-11 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 RAM_35385 355601828e2bf4ec91dea4f04e7bde77 698 SUPERFAMILY SSF55008 10 78 1.96E-18 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 RAM_35385 355601828e2bf4ec91dea4f04e7bde77 698 Gene3D G3DSA:3.40.1110.10 423 524 1.8E-76 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 RAM_35385 355601828e2bf4ec91dea4f04e7bde77 698 Pfam PF00702 haloacid dehalogenase-like hydrolase 408 606 1.3E-40 T 13-10-2018 RAM_35385 355601828e2bf4ec91dea4f04e7bde77 698 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 187 672 1.3E-87 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RAM_35385 355601828e2bf4ec91dea4f04e7bde77 698 ProSitePatterns PS01229 Hypothetical cof family signature 2. 592 614 - T 13-10-2018 RAM_35385 355601828e2bf4ec91dea4f04e7bde77 698 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 592 611 1.9E-23 T 13-10-2018 RAM_35385 355601828e2bf4ec91dea4f04e7bde77 698 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 412 426 1.9E-23 T 13-10-2018 RAM_35385 355601828e2bf4ec91dea4f04e7bde77 698 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 262 276 1.9E-23 T 13-10-2018 RAM_35385 355601828e2bf4ec91dea4f04e7bde77 698 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 539 549 1.9E-23 T 13-10-2018 RAM_35385 355601828e2bf4ec91dea4f04e7bde77 698 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 615 627 1.9E-23 T 13-10-2018 RAM_35385 355601828e2bf4ec91dea4f04e7bde77 698 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 623 648 5.4E-8 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RAM_35385 355601828e2bf4ec91dea4f04e7bde77 698 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 592 608 5.4E-8 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RAM_35385 355601828e2bf4ec91dea4f04e7bde77 698 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 564 580 5.4E-8 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RAM_35385 355601828e2bf4ec91dea4f04e7bde77 698 SUPERFAMILY SSF81665 162 670 8.5E-12 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 RAM_35385 355601828e2bf4ec91dea4f04e7bde77 698 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 149 694 2.3E-166 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 RAM_35385 355601828e2bf4ec91dea4f04e7bde77 698 ProSitePatterns PS01047 Heavy-metal-associated domain. 16 44 - T 13-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 RAM_35385 355601828e2bf4ec91dea4f04e7bde77 698 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 171 695 2.0E-112 T 13-10-2018 RAM_35385 355601828e2bf4ec91dea4f04e7bde77 698 SUPERFAMILY SSF81653 218 312 5.89E-26 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 RAM_47775 3f99695f642e040d5b79c1896bb6e0c0 245 SUPERFAMILY SSF110849 92 132 3.4E-5 T 13-10-2018 IPR036086 ParB/Sulfiredoxin superfamily RAM_38385 0219e7a9fe085e580bba7c230720ccbc 731 SUPERFAMILY SSF55874 455 564 3.93E-13 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_38385 0219e7a9fe085e580bba7c230720ccbc 731 SMART SM00387 452 567 5.7E-8 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_38385 0219e7a9fe085e580bba7c230720ccbc 731 Pfam PF00672 HAMP domain 270 336 2.1E-9 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_38385 0219e7a9fe085e580bba7c230720ccbc 731 Gene3D G3DSA:3.30.565.10 416 564 1.3E-10 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_38385 0219e7a9fe085e580bba7c230720ccbc 731 SMART SM00304 270 339 4.4E-5 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_38385 0219e7a9fe085e580bba7c230720ccbc 731 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 457 561 4.7E-7 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_14020 8945cb92b1afb1f097afd15e09fc0c7b 387 PIRSF PIRSF000497 1 386 1.2E-156 T 13-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 RAM_14020 8945cb92b1afb1f097afd15e09fc0c7b 387 SUPERFAMILY SSF55973 110 234 3.73E-44 T 13-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 RAM_14020 8945cb92b1afb1f097afd15e09fc0c7b 387 Gene3D G3DSA:3.30.300.10 1 272 1.5E-161 T 13-10-2018 RAM_14020 8945cb92b1afb1f097afd15e09fc0c7b 387 Gene3D G3DSA:3.30.300.10 92 375 1.5E-161 T 13-10-2018 RAM_14020 8945cb92b1afb1f097afd15e09fc0c7b 387 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 1 384 6.4E-161 T 13-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 RAM_14020 8945cb92b1afb1f097afd15e09fc0c7b 387 Gene3D G3DSA:3.30.300.10 137 235 1.5E-161 T 13-10-2018 RAM_14020 8945cb92b1afb1f097afd15e09fc0c7b 387 SUPERFAMILY SSF55973 1 99 7.85E-40 T 13-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 RAM_14020 8945cb92b1afb1f097afd15e09fc0c7b 387 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 235 373 1.0E-65 T 13-10-2018 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 RAM_14020 8945cb92b1afb1f097afd15e09fc0c7b 387 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 261 269 - T 13-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 RAM_14020 8945cb92b1afb1f097afd15e09fc0c7b 387 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 1 385 52.695 T 13-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 RAM_14020 8945cb92b1afb1f097afd15e09fc0c7b 387 SUPERFAMILY SSF55973 235 384 1.69E-65 T 13-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 RAM_14020 8945cb92b1afb1f097afd15e09fc0c7b 387 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 116 126 - T 13-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 RAM_14020 8945cb92b1afb1f097afd15e09fc0c7b 387 Pfam PF02772 S-adenosylmethionine synthetase, central domain 115 233 2.3E-41 T 13-10-2018 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 RAM_14020 8945cb92b1afb1f097afd15e09fc0c7b 387 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 1 91 6.3E-35 T 13-10-2018 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 RAM_32970 8151315c1f9809da1beb68f095f8f462 782 Gene3D G3DSA:3.20.20.80 31 444 3.7E-159 T 13-10-2018 RAM_32970 8151315c1f9809da1beb68f095f8f462 782 Gene3D G3DSA:2.80.10.50 652 781 1.9E-41 T 13-10-2018 RAM_32970 8151315c1f9809da1beb68f095f8f462 782 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 540 622 2.1E-6 T 13-10-2018 RAM_32970 8151315c1f9809da1beb68f095f8f462 782 SUPERFAMILY SSF49899 517 624 1.19E-6 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily RAM_32970 8151315c1f9809da1beb68f095f8f462 782 SUPERFAMILY SSF51445 34 335 1.1E-32 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_32970 8151315c1f9809da1beb68f095f8f462 782 Pfam PF02057 Glycosyl hydrolase family 59 34 334 3.0E-79 T 13-10-2018 IPR001286 Glycoside hydrolase, family 59 GO:0004336|GO:0006683 KEGG: 00600+3.2.1.46|Reactome: R-HSA-1660662 RAM_32970 8151315c1f9809da1beb68f095f8f462 782 Gene3D G3DSA:3.20.20.70 76 253 3.7E-159 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_32970 8151315c1f9809da1beb68f095f8f462 782 Gene3D G3DSA:2.60.120.560 453 647 9.1E-52 T 13-10-2018 RAM_32970 8151315c1f9809da1beb68f095f8f462 782 SMART SM00458 654 782 1.8E-30 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_32970 8151315c1f9809da1beb68f095f8f462 782 Pfam PF00652 Ricin-type beta-trefoil lectin domain 658 779 4.7E-28 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_32970 8151315c1f9809da1beb68f095f8f462 782 SUPERFAMILY SSF50370 656 780 3.38E-38 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_41795 8ebc44c75285cfb821461c92c741ece4 275 Pfam PF12833 Helix-turn-helix domain 191 268 9.9E-21 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_41795 8ebc44c75285cfb821461c92c741ece4 275 SMART SM00342 184 267 6.8E-26 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_41795 8ebc44c75285cfb821461c92c741ece4 275 Pfam PF02311 AraC-like ligand binding domain 31 135 6.6E-6 T 13-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 RAM_41795 8ebc44c75285cfb821461c92c741ece4 275 SUPERFAMILY SSF46689 221 269 2.11E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_41795 8ebc44c75285cfb821461c92c741ece4 275 Gene3D G3DSA:1.10.10.60 176 272 2.6E-23 T 13-10-2018 RAM_41795 8ebc44c75285cfb821461c92c741ece4 275 Gene3D G3DSA:2.60.120.10 14 133 1.5E-5 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_41795 8ebc44c75285cfb821461c92c741ece4 275 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 251 267 3.3E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RAM_41795 8ebc44c75285cfb821461c92c741ece4 275 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 236 251 3.3E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RAM_41795 8ebc44c75285cfb821461c92c741ece4 275 SUPERFAMILY SSF51215 29 154 8.11E-14 T 13-10-2018 IPR037923 Transcription regulator HTH-like RAM_27845 ebf675276a802ac67257ec7216efa8a9 168 PRINTS PR01438 Universal stress protein signature 119 141 1.4E-13 T 13-10-2018 IPR006015 Universal stress protein A RAM_27845 ebf675276a802ac67257ec7216efa8a9 168 PRINTS PR01438 Universal stress protein signature 101 113 1.4E-13 T 13-10-2018 IPR006015 Universal stress protein A RAM_27845 ebf675276a802ac67257ec7216efa8a9 168 PRINTS PR01438 Universal stress protein signature 4 22 1.4E-13 T 13-10-2018 IPR006015 Universal stress protein A RAM_27845 ebf675276a802ac67257ec7216efa8a9 168 Pfam PF00582 Universal stress protein family 7 141 6.1E-24 T 13-10-2018 IPR006016 UspA RAM_27845 ebf675276a802ac67257ec7216efa8a9 168 Gene3D G3DSA:3.40.50.620 1 151 1.5E-36 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAM_27845 ebf675276a802ac67257ec7216efa8a9 168 SUPERFAMILY SSF52402 6 148 8.37E-30 T 13-10-2018 RAM_06825 9c86c9c196ee4a0963407fb599caa75a 390 PIRSF PIRSF000185 2 390 1.1E-81 T 13-10-2018 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 RAM_06825 9c86c9c196ee4a0963407fb599caa75a 390 SUPERFAMILY SSF53223 9 129 2.4E-20 T 13-10-2018 RAM_06825 9c86c9c196ee4a0963407fb599caa75a 390 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 18 111 1.4E-9 T 13-10-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RAM_06825 9c86c9c196ee4a0963407fb599caa75a 390 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 69 82 - T 13-10-2018 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RAM_06825 9c86c9c196ee4a0963407fb599caa75a 390 SMART SM00839 159 390 2.6E-57 T 13-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RAM_06825 9c86c9c196ee4a0963407fb599caa75a 390 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 158 383 6.3E-33 T 13-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RAM_06825 9c86c9c196ee4a0963407fb599caa75a 390 SUPERFAMILY SSF51735 158 387 6.57E-41 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_06825 9c86c9c196ee4a0963407fb599caa75a 390 Gene3D G3DSA:3.40.50.720 158 390 1.1E-48 T 13-10-2018 RAM_06825 9c86c9c196ee4a0963407fb599caa75a 390 Gene3D G3DSA:3.40.50.10860 6 133 1.1E-19 T 13-10-2018 RAM_08295 23559c7bcc2239827361eb675a275859 189 TIGRFAM TIGR02464 ribofla_fusion: conserved hypothetical protein 27 185 2.2E-48 T 13-10-2018 IPR012816 NADAR RAM_08295 23559c7bcc2239827361eb675a275859 189 Gene3D G3DSA:1.10.357.40 11 189 1.2E-42 T 13-10-2018 IPR037238 YbiA-like superfamily RAM_08295 23559c7bcc2239827361eb675a275859 189 SUPERFAMILY SSF143990 18 187 5.89E-52 T 13-10-2018 IPR037238 YbiA-like superfamily RAM_08295 23559c7bcc2239827361eb675a275859 189 Pfam PF08719 Domain of unknown function (DUF1768) 40 186 2.4E-51 T 13-10-2018 IPR012816 NADAR RAM_47685 d02c0fcdf879d37f40200feeb4e65d23 154 SUPERFAMILY SSF55658 3 57 1.74E-16 T 13-10-2018 IPR009027 Ribosomal protein L9/RNase H1, N-terminal RAM_47685 d02c0fcdf879d37f40200feeb4e65d23 154 ProSitePatterns PS00651 Ribosomal protein L9 signature. 14 41 - T 13-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_47685 d02c0fcdf879d37f40200feeb4e65d23 154 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 2 151 24.031 T 13-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_47685 d02c0fcdf879d37f40200feeb4e65d23 154 TIGRFAM TIGR00158 L9: ribosomal protein bL9 3 150 1.5E-32 T 13-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_47685 d02c0fcdf879d37f40200feeb4e65d23 154 Gene3D G3DSA:3.40.5.10 2 60 5.1E-21 T 13-10-2018 IPR036935 Ribosomal protein L9, N-terminal domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_47685 d02c0fcdf879d37f40200feeb4e65d23 154 SUPERFAMILY SSF55653 58 148 3.27E-20 T 13-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily RAM_47685 d02c0fcdf879d37f40200feeb4e65d23 154 Pfam PF01281 Ribosomal protein L9, N-terminal domain 3 47 7.3E-20 T 13-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_47685 d02c0fcdf879d37f40200feeb4e65d23 154 Pfam PF03948 Ribosomal protein L9, C-terminal domain 65 150 1.3E-22 T 13-10-2018 IPR020069 Ribosomal protein L9, C-terminal RAM_47685 d02c0fcdf879d37f40200feeb4e65d23 154 Gene3D G3DSA:3.10.430.100 61 150 3.8E-21 T 13-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily RAM_21770 c77f6e0e2ce51dc5fabedaae8b85a5bd 308 Gene3D G3DSA:3.40.50.720 1 289 4.3E-99 T 13-10-2018 RAM_21770 c77f6e0e2ce51dc5fabedaae8b85a5bd 308 Gene3D G3DSA:3.90.25.10 181 302 4.3E-99 T 13-10-2018 RAM_21770 c77f6e0e2ce51dc5fabedaae8b85a5bd 308 SUPERFAMILY SSF51735 1 305 8.78E-88 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_21770 c77f6e0e2ce51dc5fabedaae8b85a5bd 308 Pfam PF16363 GDP-mannose 4,6 dehydratase 2 298 5.8E-52 T 13-10-2018 IPR016040 NAD(P)-binding domain RAM_26630 4b40497f144c3437bafc3a977083ce83 783 Gene3D G3DSA:2.60.40.1180 693 783 2.5E-7 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta RAM_26630 4b40497f144c3437bafc3a977083ce83 783 Pfam PF01120 Alpha-L-fucosidase 346 689 1.5E-97 T 13-10-2018 IPR000933 Glycoside hydrolase, family 29 GO:0004560|GO:0005975 KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 RAM_26630 4b40497f144c3437bafc3a977083ce83 783 SMART SM00812 345 733 9.5E-129 T 13-10-2018 IPR000933 Glycoside hydrolase, family 29 GO:0004560|GO:0005975 KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 RAM_26630 4b40497f144c3437bafc3a977083ce83 783 PRINTS PR00741 Glycosyl hydrolase family 29 signature 445 461 5.5E-26 T 13-10-2018 IPR016286 Alpha-L-fucosidase, metazoa-type GO:0004560|GO:0006004 KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 RAM_26630 4b40497f144c3437bafc3a977083ce83 783 PRINTS PR00741 Glycosyl hydrolase family 29 signature 492 511 5.5E-26 T 13-10-2018 IPR016286 Alpha-L-fucosidase, metazoa-type GO:0004560|GO:0006004 KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 RAM_26630 4b40497f144c3437bafc3a977083ce83 783 PRINTS PR00741 Glycosyl hydrolase family 29 signature 406 421 5.5E-26 T 13-10-2018 IPR016286 Alpha-L-fucosidase, metazoa-type GO:0004560|GO:0006004 KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 RAM_26630 4b40497f144c3437bafc3a977083ce83 783 PRINTS PR00741 Glycosyl hydrolase family 29 signature 642 663 5.5E-26 T 13-10-2018 IPR016286 Alpha-L-fucosidase, metazoa-type GO:0004560|GO:0006004 KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 RAM_26630 4b40497f144c3437bafc3a977083ce83 783 PRINTS PR00741 Glycosyl hydrolase family 29 signature 675 697 5.5E-26 T 13-10-2018 IPR016286 Alpha-L-fucosidase, metazoa-type GO:0004560|GO:0006004 KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 RAM_26630 4b40497f144c3437bafc3a977083ce83 783 Gene3D G3DSA:3.20.20.80 342 692 2.4E-120 T 13-10-2018 RAM_26630 4b40497f144c3437bafc3a977083ce83 783 SUPERFAMILY SSF51445 346 692 9.26E-99 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_26630 4b40497f144c3437bafc3a977083ce83 783 Pfam PF16757 Alpha-L-fucosidase C-terminal domain 705 780 1.1E-6 T 13-10-2018 IPR031919 Alpha-L-fucosidase, C-terminal KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 RAM_37715 a36a0ec7c59b1f21843b2709e9a5d8cc 249 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 248 3.9E-56 T 13-10-2018 RAM_37715 a36a0ec7c59b1f21843b2709e9a5d8cc 249 Gene3D G3DSA:3.40.50.720 1 249 5.1E-72 T 13-10-2018 RAM_37715 a36a0ec7c59b1f21843b2709e9a5d8cc 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 4.4E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_37715 a36a0ec7c59b1f21843b2709e9a5d8cc 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 4.4E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_37715 a36a0ec7c59b1f21843b2709e9a5d8cc 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 4.4E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_37715 a36a0ec7c59b1f21843b2709e9a5d8cc 249 SUPERFAMILY SSF51735 4 248 2.76E-69 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_37715 a36a0ec7c59b1f21843b2709e9a5d8cc 249 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 176 1.4E-4 T 13-10-2018 RAM_37715 a36a0ec7c59b1f21843b2709e9a5d8cc 249 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_37715 a36a0ec7c59b1f21843b2709e9a5d8cc 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 6.0E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_37715 a36a0ec7c59b1f21843b2709e9a5d8cc 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 6.0E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_37715 a36a0ec7c59b1f21843b2709e9a5d8cc 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 6.0E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_37715 a36a0ec7c59b1f21843b2709e9a5d8cc 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 6.0E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_37715 a36a0ec7c59b1f21843b2709e9a5d8cc 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 6.0E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_37715 a36a0ec7c59b1f21843b2709e9a5d8cc 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 6.0E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_35880 7cb4679daa48f0da4bd9e791d48e7bbe 570 SUPERFAMILY SSF52016 375 558 2.2E-59 T 13-10-2018 RAM_35880 7cb4679daa48f0da4bd9e791d48e7bbe 570 SUPERFAMILY SSF143975 2 374 1.06E-123 T 13-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RAM_35880 7cb4679daa48f0da4bd9e791d48e7bbe 570 Pfam PF00920 Dehydratase family 40 553 1.2E-177 T 13-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RAM_35880 7cb4679daa48f0da4bd9e791d48e7bbe 570 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 123 133 - T 13-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RAM_35880 7cb4679daa48f0da4bd9e791d48e7bbe 570 Gene3D G3DSA:3.50.30.80 375 527 1.3E-51 T 13-10-2018 RAM_25880 ba6cda3374edeb862a2334b0edef4b73 289 PRINTS PR00412 Epoxide hydrolase signature 39 57 6.1E-9 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_25880 ba6cda3374edeb862a2334b0edef4b73 289 PRINTS PR00412 Epoxide hydrolase signature 116 129 6.1E-9 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_25880 ba6cda3374edeb862a2334b0edef4b73 289 PRINTS PR00412 Epoxide hydrolase signature 262 284 6.1E-9 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_25880 ba6cda3374edeb862a2334b0edef4b73 289 Pfam PF00561 alpha/beta hydrolase fold 34 131 1.8E-15 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_25880 ba6cda3374edeb862a2334b0edef4b73 289 Gene3D G3DSA:3.40.50.1820 10 285 4.5E-68 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_25880 ba6cda3374edeb862a2334b0edef4b73 289 SUPERFAMILY SSF53474 6 284 2.27E-57 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_46200 06318076a0f836807e68c641c18bb8db 301 SUPERFAMILY SSF55729 9 299 5.77E-48 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_46200 06318076a0f836807e68c641c18bb8db 301 TIGRFAM TIGR03448 mycothiol_MshD: mycothiol synthase 6 299 1.2E-94 T 13-10-2018 IPR017813 Mycothiol acetyltransferase GO:0016747 RAM_46200 06318076a0f836807e68c641c18bb8db 301 Hamap MF_01698 Mycothiol acetyltransferase [mshD]. 5 301 33.55 T 13-10-2018 IPR017813 Mycothiol acetyltransferase GO:0016747 RAM_46200 06318076a0f836807e68c641c18bb8db 301 PIRSF PIRSF021524 3 301 1.1E-105 T 13-10-2018 IPR017813 Mycothiol acetyltransferase GO:0016747 RAM_46200 06318076a0f836807e68c641c18bb8db 301 Gene3D G3DSA:3.40.630.30 3 301 7.6E-89 T 13-10-2018 RAM_46200 06318076a0f836807e68c641c18bb8db 301 Pfam PF00583 Acetyltransferase (GNAT) family 44 120 2.8E-9 T 13-10-2018 IPR000182 GNAT domain RAM_46200 06318076a0f836807e68c641c18bb8db 301 Pfam PF00583 Acetyltransferase (GNAT) family 190 290 1.6E-16 T 13-10-2018 IPR000182 GNAT domain RAM_40545 d7193d28aa9e430f8b2984876de88f6b 221 SMART SM00448 2 116 3.7E-33 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_40545 d7193d28aa9e430f8b2984876de88f6b 221 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 154 168 2.1E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_40545 d7193d28aa9e430f8b2984876de88f6b 221 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 184 196 2.1E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_40545 d7193d28aa9e430f8b2984876de88f6b 221 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 168 184 2.1E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_40545 d7193d28aa9e430f8b2984876de88f6b 221 SMART SM00421 151 208 1.7E-26 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_40545 d7193d28aa9e430f8b2984876de88f6b 221 SUPERFAMILY SSF52172 1 134 2.85E-36 T 13-10-2018 IPR011006 CheY-like superfamily RAM_40545 d7193d28aa9e430f8b2984876de88f6b 221 Gene3D G3DSA:3.40.50.12740 2 214 2.3E-72 T 13-10-2018 RAM_40545 d7193d28aa9e430f8b2984876de88f6b 221 SUPERFAMILY SSF46894 144 214 7.48E-23 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_40545 d7193d28aa9e430f8b2984876de88f6b 221 Pfam PF00072 Response regulator receiver domain 4 117 1.1E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_40545 d7193d28aa9e430f8b2984876de88f6b 221 Pfam PF00196 Bacterial regulatory proteins, luxR family 153 208 4.2E-19 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_02465 95e870ea9571294ab268369e0e4277bf 435 SUPERFAMILY SSF69075 317 418 9.15E-16 T 13-10-2018 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 RAM_02465 95e870ea9571294ab268369e0e4277bf 435 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 2 415 25.608 T 13-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 RAM_02465 95e870ea9571294ab268369e0e4277bf 435 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 3 416 9.4E-118 T 13-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 RAM_02465 95e870ea9571294ab268369e0e4277bf 435 SUPERFAMILY SSF51735 165 299 1.18E-22 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_02465 95e870ea9571294ab268369e0e4277bf 435 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 318 416 1.7E-20 T 13-10-2018 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 RAM_02465 95e870ea9571294ab268369e0e4277bf 435 PIRSF PIRSF000445 1 429 3.0E-129 T 13-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 RAM_02465 95e870ea9571294ab268369e0e4277bf 435 ProSitePatterns PS00747 Glutamyl-tRNA reductase signature. 99 122 - T 13-10-2018 IPR018214 Glutamyl-tRNA reductase, conserved site GO:0008883|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 RAM_02465 95e870ea9571294ab268369e0e4277bf 435 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 6 156 1.2E-44 T 13-10-2018 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 RAM_02465 95e870ea9571294ab268369e0e4277bf 435 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 170 299 6.4E-26 T 13-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase RAM_02465 95e870ea9571294ab268369e0e4277bf 435 Gene3D G3DSA:3.40.50.720 161 308 3.4E-35 T 13-10-2018 RAM_02465 95e870ea9571294ab268369e0e4277bf 435 SUPERFAMILY SSF69742 1 158 1.83E-43 T 13-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 RAM_02465 95e870ea9571294ab268369e0e4277bf 435 Gene3D G3DSA:3.30.460.30 1 158 6.7E-55 T 13-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 RAM_35220 c9621a2de25e4260fed76d17819105e7 1915 Gene3D G3DSA:3.40.50.720 1012 1418 1.9E-66 T 13-10-2018 RAM_35220 c9621a2de25e4260fed76d17819105e7 1915 Gene3D G3DSA:1.10.1200.10 896 996 2.5E-11 T 13-10-2018 IPR036736 ACP-like superfamily RAM_35220 c9621a2de25e4260fed76d17819105e7 1915 SUPERFAMILY SSF51735 1185 1431 3.47E-31 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_35220 c9621a2de25e4260fed76d17819105e7 1915 SMART SM00826 1433 1592 8.1E-4 T 13-10-2018 IPR020807 Polyketide synthase, dehydratase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_35220 c9621a2de25e4260fed76d17819105e7 1915 Pfam PF08659 KR domain 1188 1367 3.1E-28 T 13-10-2018 IPR013968 Polyketide synthase, ketoreductase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_35220 c9621a2de25e4260fed76d17819105e7 1915 SUPERFAMILY SSF53901 3 384 2.6E-52 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_35220 c9621a2de25e4260fed76d17819105e7 1915 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 558 840 1.0E-30 T 13-10-2018 IPR020801 Polyketide synthase, acyl transferase domain RAM_35220 c9621a2de25e4260fed76d17819105e7 1915 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 2 263 1.3E-44 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal RAM_35220 c9621a2de25e4260fed76d17819105e7 1915 Gene3D G3DSA:3.40.366.20 458 860 1.9E-88 T 13-10-2018 RAM_35220 c9621a2de25e4260fed76d17819105e7 1915 Gene3D G3DSA:3.40.47.10 1 445 7.7E-112 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_35220 c9621a2de25e4260fed76d17819105e7 1915 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 271 384 9.3E-30 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal RAM_35220 c9621a2de25e4260fed76d17819105e7 1915 Pfam PF00698 Acyl transferase domain 563 811 2.2E-30 T 13-10-2018 IPR014043 Acyl transferase RAM_35220 c9621a2de25e4260fed76d17819105e7 1915 SUPERFAMILY SSF47336 914 990 2.02E-5 T 13-10-2018 IPR036736 ACP-like superfamily RAM_35220 c9621a2de25e4260fed76d17819105e7 1915 Pfam PF14765 Polyketide synthase dehydratase 1437 1711 2.8E-43 T 13-10-2018 IPR020807 Polyketide synthase, dehydratase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_35220 c9621a2de25e4260fed76d17819105e7 1915 SUPERFAMILY SSF52151 554 831 3.4E-43 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RAM_35220 c9621a2de25e4260fed76d17819105e7 1915 SUPERFAMILY SSF55048 665 728 3.79E-11 T 13-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding RAM_35220 c9621a2de25e4260fed76d17819105e7 1915 Gene3D G3DSA:3.10.129.110 1453 1711 3.8E-31 T 13-10-2018 RAM_35220 c9621a2de25e4260fed76d17819105e7 1915 SMART SM00825 Beta-ketoacyl synthase 2 439 6.8E-41 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RAM_35220 c9621a2de25e4260fed76d17819105e7 1915 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 1186 1369 3.4E-11 T 13-10-2018 RAM_02005 548e61890bb631003183e73ff790c876 404 SUPERFAMILY SSF51905 144 304 3.35E-29 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_02005 548e61890bb631003183e73ff790c876 404 Gene3D G3DSA:3.30.390.30 315 399 5.0E-29 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RAM_02005 548e61890bb631003183e73ff790c876 404 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 251 273 8.5E-25 T 13-10-2018 RAM_02005 548e61890bb631003183e73ff790c876 404 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 8.5E-25 T 13-10-2018 RAM_02005 548e61890bb631003183e73ff790c876 404 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 226 242 8.5E-25 T 13-10-2018 RAM_02005 548e61890bb631003183e73ff790c876 404 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 144 162 8.5E-25 T 13-10-2018 RAM_02005 548e61890bb631003183e73ff790c876 404 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 99 117 8.5E-25 T 13-10-2018 RAM_02005 548e61890bb631003183e73ff790c876 404 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 144 169 3.2E-13 T 13-10-2018 RAM_02005 548e61890bb631003183e73ff790c876 404 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 266 273 3.2E-13 T 13-10-2018 RAM_02005 548e61890bb631003183e73ff790c876 404 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 3 25 3.2E-13 T 13-10-2018 RAM_02005 548e61890bb631003183e73ff790c876 404 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 227 241 3.2E-13 T 13-10-2018 RAM_02005 548e61890bb631003183e73ff790c876 404 Gene3D G3DSA:3.50.50.60 112 233 6.6E-108 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_02005 548e61890bb631003183e73ff790c876 404 SUPERFAMILY SSF55424 308 401 7.55E-26 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RAM_02005 548e61890bb631003183e73ff790c876 404 Pfam PF14759 Reductase C-terminal 315 397 1.1E-24 T 13-10-2018 IPR028202 Reductase, C-terminal RAM_02005 548e61890bb631003183e73ff790c876 404 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 296 1.2E-60 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAM_02005 548e61890bb631003183e73ff790c876 404 Gene3D G3DSA:3.50.50.60 5 304 6.6E-108 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_02005 548e61890bb631003183e73ff790c876 404 SUPERFAMILY SSF51905 2 186 5.3E-46 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_20890 4a3bda48866210f84964d03e5ca57227 899 SMART SM00331 432 644 6.9E-28 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_20890 4a3bda48866210f84964d03e5ca57227 899 SUPERFAMILY SSF81606 450 644 3.92E-9 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_20890 4a3bda48866210f84964d03e5ca57227 899 SUPERFAMILY SSF52091 799 885 2.16E-10 T 13-10-2018 IPR036513 STAS domain superfamily RAM_20890 4a3bda48866210f84964d03e5ca57227 899 SMART SM00065 138 288 5.8E-14 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_20890 4a3bda48866210f84964d03e5ca57227 899 Gene3D G3DSA:3.30.750.24 791 891 1.0E-12 T 13-10-2018 IPR036513 STAS domain superfamily RAM_20890 4a3bda48866210f84964d03e5ca57227 899 Gene3D G3DSA:3.30.450.40 113 304 4.5E-25 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_20890 4a3bda48866210f84964d03e5ca57227 899 Gene3D G3DSA:3.30.565.10 646 773 1.8E-29 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_20890 4a3bda48866210f84964d03e5ca57227 899 Pfam PF13581 Histidine kinase-like ATPase domain 654 767 2.8E-15 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_20890 4a3bda48866210f84964d03e5ca57227 899 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 288 405 1.5E-21 T 13-10-2018 IPR000014 PAS domain RAM_20890 4a3bda48866210f84964d03e5ca57227 899 SUPERFAMILY SSF55781 119 283 6.11E-23 T 13-10-2018 RAM_20890 4a3bda48866210f84964d03e5ca57227 899 Pfam PF00989 PAS fold 295 343 7.6E-10 T 13-10-2018 IPR013767 PAS fold GO:0006355 RAM_20890 4a3bda48866210f84964d03e5ca57227 899 SUPERFAMILY SSF55785 279 397 2.69E-21 T 13-10-2018 IPR035965 PAS domain superfamily RAM_20890 4a3bda48866210f84964d03e5ca57227 899 SUPERFAMILY SSF55785 7 100 9.95E-10 T 13-10-2018 IPR035965 PAS domain superfamily RAM_20890 4a3bda48866210f84964d03e5ca57227 899 Pfam PF08447 PAS fold 29 99 1.4E-9 T 13-10-2018 IPR013655 PAS fold-3 GO:0005515 RAM_20890 4a3bda48866210f84964d03e5ca57227 899 Pfam PF01590 GAF domain 139 274 1.5E-12 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_20890 4a3bda48866210f84964d03e5ca57227 899 Pfam PF13466 STAS domain 803 884 1.6E-11 T 13-10-2018 IPR002645 STAS domain RAM_20890 4a3bda48866210f84964d03e5ca57227 899 Gene3D G3DSA:3.30.450.20 2 112 7.6E-16 T 13-10-2018 RAM_20890 4a3bda48866210f84964d03e5ca57227 899 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 462 644 1.8E-43 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_20890 4a3bda48866210f84964d03e5ca57227 899 SMART SM00091 4 73 0.0061 T 13-10-2018 IPR000014 PAS domain RAM_20890 4a3bda48866210f84964d03e5ca57227 899 SMART SM00091 292 358 1.4E-13 T 13-10-2018 IPR000014 PAS domain RAM_20890 4a3bda48866210f84964d03e5ca57227 899 SUPERFAMILY SSF55874 677 770 2.02E-7 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_20890 4a3bda48866210f84964d03e5ca57227 899 Gene3D G3DSA:3.30.450.20 305 404 7.9E-19 T 13-10-2018 RAM_20890 4a3bda48866210f84964d03e5ca57227 899 Gene3D G3DSA:3.60.40.10 405 644 5.4E-59 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_45810 9c10f0a4ae6da2ae238871581ff0eadb 246 SUPERFAMILY SSF52172 17 140 1.71E-41 T 13-10-2018 IPR011006 CheY-like superfamily RAM_45810 9c10f0a4ae6da2ae238871581ff0eadb 246 SMART SM00448 21 132 2.8E-42 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_45810 9c10f0a4ae6da2ae238871581ff0eadb 246 SUPERFAMILY SSF46894 145 243 1.81E-29 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_45810 9c10f0a4ae6da2ae238871581ff0eadb 246 Pfam PF00486 Transcriptional regulatory protein, C terminal 170 242 1.1E-24 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_45810 9c10f0a4ae6da2ae238871581ff0eadb 246 Gene3D G3DSA:3.40.50.2300 8 142 3.8E-37 T 13-10-2018 RAM_45810 9c10f0a4ae6da2ae238871581ff0eadb 246 SMART SM00862 168 242 1.2E-25 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_45810 9c10f0a4ae6da2ae238871581ff0eadb 246 Pfam PF00072 Response regulator receiver domain 23 131 7.8E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_45810 9c10f0a4ae6da2ae238871581ff0eadb 246 Gene3D G3DSA:1.10.10.10 146 246 1.8E-33 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_07285 2859c0696d27f5ea8d508854b98aeae0 300 SUPERFAMILY SSF53850 89 268 1.12E-30 T 13-10-2018 RAM_07285 2859c0696d27f5ea8d508854b98aeae0 300 Pfam PF03466 LysR substrate binding domain 88 273 1.0E-35 T 13-10-2018 IPR005119 LysR, substrate-binding RAM_07285 2859c0696d27f5ea8d508854b98aeae0 300 Gene3D G3DSA:3.40.190.10 91 271 2.8E-34 T 13-10-2018 RAM_07285 2859c0696d27f5ea8d508854b98aeae0 300 SUPERFAMILY SSF46785 1 111 3.63E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_07285 2859c0696d27f5ea8d508854b98aeae0 300 Gene3D G3DSA:3.40.190.10 165 265 2.8E-34 T 13-10-2018 RAM_07285 2859c0696d27f5ea8d508854b98aeae0 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 1.3E-21 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_07285 2859c0696d27f5ea8d508854b98aeae0 300 Gene3D G3DSA:1.10.10.10 1 87 2.8E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_07285 2859c0696d27f5ea8d508854b98aeae0 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 6.8E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_07285 2859c0696d27f5ea8d508854b98aeae0 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 6.8E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_07285 2859c0696d27f5ea8d508854b98aeae0 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 6.8E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_24215 07e7f42675efdcafaa03d2fe634fffe0 375 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 229 370 4.3E-32 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_24215 07e7f42675efdcafaa03d2fe634fffe0 375 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 118 208 1.3E-19 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RAM_24215 07e7f42675efdcafaa03d2fe634fffe0 375 SUPERFAMILY SSF47203 229 371 2.26E-35 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_24215 07e7f42675efdcafaa03d2fe634fffe0 375 SUPERFAMILY SSF56645 16 219 2.62E-52 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_24215 07e7f42675efdcafaa03d2fe634fffe0 375 Gene3D G3DSA:1.20.140.10 226 374 5.7E-37 T 13-10-2018 RAM_24215 07e7f42675efdcafaa03d2fe634fffe0 375 Gene3D G3DSA:2.40.110.10 117 221 1.4E-26 T 13-10-2018 RAM_24215 07e7f42675efdcafaa03d2fe634fffe0 375 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 14 114 5.1E-15 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_24215 07e7f42675efdcafaa03d2fe634fffe0 375 Gene3D G3DSA:1.10.540.10 12 116 1.7E-22 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_26120 6ee6e2a84b780be05329acfb1536594b 220 Gene3D G3DSA:3.40.50.1820 128 219 1.7E-20 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_26120 6ee6e2a84b780be05329acfb1536594b 220 SUPERFAMILY SSF53474 9 220 1.13E-39 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_26120 6ee6e2a84b780be05329acfb1536594b 220 Gene3D G3DSA:3.40.50.1820 1 127 5.4E-20 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_26120 6ee6e2a84b780be05329acfb1536594b 220 Pfam PF12697 Alpha/beta hydrolase family 15 136 3.4E-10 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_38265 4b006817a376dc298020834748c4671d 598 Gene3D G3DSA:2.60.40.1180 367 463 1.2E-12 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta RAM_38265 4b006817a376dc298020834748c4671d 598 SUPERFAMILY SSF51445 44 315 1.37E-40 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_38265 4b006817a376dc298020834748c4671d 598 SUPERFAMILY SSF49265 469 565 1.0E-12 T 13-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 RAM_38265 4b006817a376dc298020834748c4671d 598 Gene3D G3DSA:2.60.40.10 465 566 1.7E-12 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_38265 4b006817a376dc298020834748c4671d 598 SMART SM00060 472 549 4.6E-5 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 RAM_38265 4b006817a376dc298020834748c4671d 598 Gene3D G3DSA:3.20.20.80 36 329 6.5E-62 T 13-10-2018 RAM_38265 4b006817a376dc298020834748c4671d 598 Pfam PF03662 Glycosyl hydrolase family 79, N-terminal domain 119 262 5.9E-5 T 13-10-2018 IPR005199 Glycoside hydrolase, family 79 GO:0016020|GO:0016798 Reactome: R-HSA-2024096 RAM_38265 4b006817a376dc298020834748c4671d 598 Pfam PF00041 Fibronectin type III domain 475 548 1.8E-8 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 RAM_03325 02b34094e8698519fdb60cb0ade82745 230 Gene3D G3DSA:3.40.50.970 2 222 4.0E-54 T 13-10-2018 RAM_03325 02b34094e8698519fdb60cb0ade82745 230 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 24 208 2.5E-26 T 13-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 RAM_03325 02b34094e8698519fdb60cb0ade82745 230 SUPERFAMILY SSF52518 25 219 2.13E-49 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_21160 b30606a519746798a2cde411f40f7cd6 348 SUPERFAMILY SSF56512 7 335 1.05E-148 T 13-10-2018 IPR036119 Nitric oxide synthase, N-terminal domain superfamily GO:0004517|GO:0006809|GO:0055114 Reactome: R-HSA-1222556|Reactome: R-HSA-392154 RAM_21160 b30606a519746798a2cde411f40f7cd6 348 Pfam PF02898 Nitric oxide synthase, oxygenase domain 4 335 8.9E-144 T 13-10-2018 IPR004030 Nitric oxide synthase, N-terminal GO:0004517|GO:0006809|GO:0055114 Reactome: R-HSA-1222556|Reactome: R-HSA-392154 RAM_21160 b30606a519746798a2cde411f40f7cd6 348 ProSitePatterns PS60001 Nitric oxide synthase (NOS) signature. 50 57 - T 13-10-2018 IPR004030 Nitric oxide synthase, N-terminal GO:0004517|GO:0006809|GO:0055114 Reactome: R-HSA-1222556|Reactome: R-HSA-392154 RAM_21160 b30606a519746798a2cde411f40f7cd6 348 Gene3D G3DSA:3.90.340.10 6 334 1.3E-143 T 13-10-2018 RAM_21160 b30606a519746798a2cde411f40f7cd6 348 Gene3D G3DSA:3.90.440.10 67 180 1.3E-143 T 13-10-2018 RAM_21160 b30606a519746798a2cde411f40f7cd6 348 Gene3D G3DSA:3.90.1230.10 181 287 1.3E-143 T 13-10-2018 RAM_21160 b30606a519746798a2cde411f40f7cd6 348 PIRSF PIRSF037219 1 347 6.0E-147 T 13-10-2018 IPR017142 Nitric oxide synthase, oxygenase subunit GO:0004517|GO:0006809|GO:0020037 KEGG: 00220+1.14.14.47|KEGG: 00330+1.14.14.47 RAM_16895 006d0f48f4dcfc8d69345b5e3a3d7bd6 384 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 121 215 9.6E-23 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RAM_16895 006d0f48f4dcfc8d69345b5e3a3d7bd6 384 SUPERFAMILY SSF47203 227 381 1.61E-54 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_16895 006d0f48f4dcfc8d69345b5e3a3d7bd6 384 PIRSF PIRSF016578 232 382 5.5E-10 T 13-10-2018 RAM_16895 006d0f48f4dcfc8d69345b5e3a3d7bd6 384 PIRSF PIRSF016578 12 188 4.7E-6 T 13-10-2018 RAM_16895 006d0f48f4dcfc8d69345b5e3a3d7bd6 384 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 122 134 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RAM_16895 006d0f48f4dcfc8d69345b5e3a3d7bd6 384 Gene3D G3DSA:1.20.140.10 235 382 3.0E-50 T 13-10-2018 RAM_16895 006d0f48f4dcfc8d69345b5e3a3d7bd6 384 Gene3D G3DSA:2.40.110.10 119 234 2.2E-36 T 13-10-2018 RAM_16895 006d0f48f4dcfc8d69345b5e3a3d7bd6 384 SUPERFAMILY SSF56645 4 240 2.23E-68 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_16895 006d0f48f4dcfc8d69345b5e3a3d7bd6 384 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 5 116 4.5E-29 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_16895 006d0f48f4dcfc8d69345b5e3a3d7bd6 384 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 229 377 6.1E-45 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_16895 006d0f48f4dcfc8d69345b5e3a3d7bd6 384 Gene3D G3DSA:1.10.540.10 2 118 2.6E-34 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_32365 e0c7890a02d00bfc7b82dd7c56bf0c01 250 Pfam PF01381 Helix-turn-helix 2 40 4.3E-5 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_32365 e0c7890a02d00bfc7b82dd7c56bf0c01 250 SUPERFAMILY SSF47413 2 41 2.96E-5 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_32365 e0c7890a02d00bfc7b82dd7c56bf0c01 250 Gene3D G3DSA:1.10.260.40 1 46 4.7E-5 T 13-10-2018 RAM_34340 8d1cef41fbd5653c1f02cb36af34286d 131 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 7 109 23.335 T 13-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS RAM_34340 8d1cef41fbd5653c1f02cb36af34286d 131 Gene3D G3DSA:3.30.460.10 1 112 8.1E-40 T 13-10-2018 RAM_34340 8d1cef41fbd5653c1f02cb36af34286d 131 SUPERFAMILY SSF81301 7 117 3.11E-38 T 13-10-2018 RAM_34340 8d1cef41fbd5653c1f02cb36af34286d 131 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 14 108 4.1E-32 T 13-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS RAM_34340 8d1cef41fbd5653c1f02cb36af34286d 131 Pfam PF02410 Ribosomal silencing factor during starvation 15 108 1.1E-23 T 13-10-2018 RAM_28860 30345e18a28d9ec591a38ca04331ba15 100 SMART SM00421 25 70 2.3E-4 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_28860 30345e18a28d9ec591a38ca04331ba15 100 SUPERFAMILY SSF46894 25 67 2.31E-9 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_28860 30345e18a28d9ec591a38ca04331ba15 100 Gene3D G3DSA:1.10.10.10 8 87 5.4E-11 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_28860 30345e18a28d9ec591a38ca04331ba15 100 Pfam PF00196 Bacterial regulatory proteins, luxR family 26 66 2.9E-7 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_10090 4128ac06afb42a558893769d10300279 2084 Gene3D G3DSA:2.180.10.10 1389 1677 3.9E-6 T 13-10-2018 RAM_10090 4128ac06afb42a558893769d10300279 2084 Gene3D G3DSA:2.180.10.10 1787 1912 6.9E-7 T 13-10-2018 RAM_10090 4128ac06afb42a558893769d10300279 2084 Gene3D G3DSA:3.90.182.10 1121 1301 7.2E-15 T 13-10-2018 RAM_10090 4128ac06afb42a558893769d10300279 2084 Gene3D G3DSA:3.90.182.10 597 807 5.5E-18 T 13-10-2018 RAM_10090 4128ac06afb42a558893769d10300279 2084 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 1846 1912 1.6E-11 T 13-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 RAM_10090 4128ac06afb42a558893769d10300279 2084 SUPERFAMILY SSF56988 1127 1273 7.19E-23 T 13-10-2018 RAM_10090 4128ac06afb42a558893769d10300279 2084 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1034 1062 0.001 T 13-10-2018 IPR006530 YD repeat RAM_10090 4128ac06afb42a558893769d10300279 2084 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1043 1082 2.1E-4 T 13-10-2018 IPR006530 YD repeat RAM_10090 4128ac06afb42a558893769d10300279 2084 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1685 1714 0.0027 T 13-10-2018 IPR006530 YD repeat RAM_10090 4128ac06afb42a558893769d10300279 2084 Pfam PF07691 PA14 domain 609 748 2.5E-18 T 13-10-2018 IPR011658 PA14 domain RAM_10090 4128ac06afb42a558893769d10300279 2084 Pfam PF07691 PA14 domain 1128 1261 2.6E-18 T 13-10-2018 IPR011658 PA14 domain RAM_10090 4128ac06afb42a558893769d10300279 2084 SMART SM00758 1126 1268 1.4E-20 T 13-10-2018 IPR011658 PA14 domain RAM_10090 4128ac06afb42a558893769d10300279 2084 SMART SM00758 607 751 1.7E-14 T 13-10-2018 IPR011658 PA14 domain RAM_10090 4128ac06afb42a558893769d10300279 2084 SUPERFAMILY SSF56988 608 785 2.48E-29 T 13-10-2018 RAM_20550 0bc7e643e05ed1da873bda59b72e0ec7 407 SUPERFAMILY SSF56645 5 237 6.54E-39 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_20550 0bc7e643e05ed1da873bda59b72e0ec7 407 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 132 226 1.3E-18 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RAM_20550 0bc7e643e05ed1da873bda59b72e0ec7 407 Gene3D G3DSA:2.40.110.10 131 236 3.6E-23 T 13-10-2018 RAM_20550 0bc7e643e05ed1da873bda59b72e0ec7 407 Gene3D G3DSA:1.20.140.10 247 386 2.5E-13 T 13-10-2018 RAM_20550 0bc7e643e05ed1da873bda59b72e0ec7 407 SUPERFAMILY SSF47203 243 382 3.7E-16 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_20550 0bc7e643e05ed1da873bda59b72e0ec7 407 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 50 122 4.3E-5 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_20550 0bc7e643e05ed1da873bda59b72e0ec7 407 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 243 379 2.1E-12 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_20550 0bc7e643e05ed1da873bda59b72e0ec7 407 Gene3D G3DSA:1.10.540.10 6 129 6.6E-9 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_07455 62c026e6553578126900e5274d303442 720 Gene3D G3DSA:2.80.10.50 14 66 5.5E-13 T 13-10-2018 RAM_07455 62c026e6553578126900e5274d303442 720 SUPERFAMILY SSF51126 431 689 4.87E-6 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor RAM_07455 62c026e6553578126900e5274d303442 720 SMART SM00458 28 164 1.3E-13 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_07455 62c026e6553578126900e5274d303442 720 SUPERFAMILY SSF50370 25 165 7.54E-37 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_07455 62c026e6553578126900e5274d303442 720 Gene3D G3DSA:2.80.10.50 118 177 1.3E-12 T 13-10-2018 RAM_07455 62c026e6553578126900e5274d303442 720 Gene3D G3DSA:2.80.10.50 67 117 5.5E-12 T 13-10-2018 RAM_07455 62c026e6553578126900e5274d303442 720 Pfam PF00652 Ricin-type beta-trefoil lectin domain 31 161 1.2E-19 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_11890 913399f603064e636b26fc0fe8cfae38 1561 Gene3D G3DSA:3.40.50.300 309 458 3.4E-26 T 13-10-2018 RAM_11890 913399f603064e636b26fc0fe8cfae38 1561 SMART SM00487 28 245 3.0E-35 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RAM_11890 913399f603064e636b26fc0fe8cfae38 1561 SUPERFAMILY SSF52540 42 446 1.32E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_11890 913399f603064e636b26fc0fe8cfae38 1561 Pfam PF08494 DEAD/H associated 705 898 1.5E-74 T 13-10-2018 IPR013701 DEAD/H associated GO:0005524|GO:0016818 RAM_11890 913399f603064e636b26fc0fe8cfae38 1561 SMART SM00382 45 429 0.0042 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_11890 913399f603064e636b26fc0fe8cfae38 1561 SMART SM00490 336 442 2.4E-13 T 13-10-2018 IPR001650 Helicase, C-terminal RAM_11890 913399f603064e636b26fc0fe8cfae38 1561 Pfam PF00270 DEAD/DEAH box helicase 33 216 3.2E-23 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RAM_11890 913399f603064e636b26fc0fe8cfae38 1561 Pfam PF00271 Helicase conserved C-terminal domain 320 442 1.8E-13 T 13-10-2018 IPR001650 Helicase, C-terminal RAM_11890 913399f603064e636b26fc0fe8cfae38 1561 Gene3D G3DSA:3.40.50.300 15 232 1.2E-55 T 13-10-2018 RAM_01775 3e7fc71e8a845c479bd819a4b73927f3 546 SUPERFAMILY SSF56112 267 479 7.11E-41 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_01775 3e7fc71e8a845c479bd819a4b73927f3 546 Gene3D G3DSA:3.30.200.20 228 363 6.8E-90 T 13-10-2018 RAM_01775 3e7fc71e8a845c479bd819a4b73927f3 546 Pfam PF00069 Protein kinase domain 276 488 1.5E-27 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_01775 3e7fc71e8a845c479bd819a4b73927f3 546 Gene3D G3DSA:1.10.510.10 364 492 6.8E-90 T 13-10-2018 RAM_01775 3e7fc71e8a845c479bd819a4b73927f3 546 SMART SM00220 276 524 3.9E-12 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_01775 3e7fc71e8a845c479bd819a4b73927f3 546 Pfam PF16919 Protein kinase G rubredoxin domain 183 275 4.8E-32 T 13-10-2018 IPR031634 Protein kinase G, rubredoxin domain KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 RAM_01775 3e7fc71e8a845c479bd819a4b73927f3 546 PRINTS PR01217 Proline rich extensin signature 59 80 1.2E-10 T 13-10-2018 RAM_01775 3e7fc71e8a845c479bd819a4b73927f3 546 PRINTS PR01217 Proline rich extensin signature 134 159 1.2E-10 T 13-10-2018 RAM_01775 3e7fc71e8a845c479bd819a4b73927f3 546 PRINTS PR01217 Proline rich extensin signature 21 37 1.2E-10 T 13-10-2018 RAM_01775 3e7fc71e8a845c479bd819a4b73927f3 546 PRINTS PR01217 Proline rich extensin signature 112 129 1.2E-10 T 13-10-2018 RAM_01775 3e7fc71e8a845c479bd819a4b73927f3 546 PRINTS PR01217 Proline rich extensin signature 93 109 1.2E-10 T 13-10-2018 RAM_34915 2dc9987a8d021586ce8cd6d0958277ab 522 SUPERFAMILY SSF51011 307 393 5.9E-16 T 13-10-2018 RAM_34915 2dc9987a8d021586ce8cd6d0958277ab 522 Gene3D G3DSA:3.20.20.70 31 307 2.3E-126 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_34915 2dc9987a8d021586ce8cd6d0958277ab 522 SMART SM00606 397 522 0.0083 T 13-10-2018 IPR006584 Cellulose binding, type IV GO:0030246 RAM_34915 2dc9987a8d021586ce8cd6d0958277ab 522 SUPERFAMILY SSF51445 30 306 2.0E-100 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_34915 2dc9987a8d021586ce8cd6d0958277ab 522 Gene3D G3DSA:2.60.120.260 396 522 1.0E-34 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_34915 2dc9987a8d021586ce8cd6d0958277ab 522 Pfam PF03422 Carbohydrate binding module (family 6) 402 521 7.9E-13 T 13-10-2018 IPR005084 Carbohydrate binding module family 6 GO:0030246 RAM_34915 2dc9987a8d021586ce8cd6d0958277ab 522 Pfam PF16499 Alpha galactosidase A 38 305 2.0E-82 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_34915 2dc9987a8d021586ce8cd6d0958277ab 522 Gene3D G3DSA:2.60.40.1180 308 393 6.5E-19 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta RAM_34915 2dc9987a8d021586ce8cd6d0958277ab 522 ProSitePatterns PS00512 Alpha-galactosidase signature. 76 92 - T 13-10-2018 IPR000111 Glycoside hydrolase family 27/36, conserved site GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_34915 2dc9987a8d021586ce8cd6d0958277ab 522 SUPERFAMILY SSF49785 399 522 1.7E-23 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_34915 2dc9987a8d021586ce8cd6d0958277ab 522 PRINTS PR00740 Glycosyl hydrolase family 27 signature 240 259 1.2E-63 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_34915 2dc9987a8d021586ce8cd6d0958277ab 522 PRINTS PR00740 Glycosyl hydrolase family 27 signature 148 165 1.2E-63 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_34915 2dc9987a8d021586ce8cd6d0958277ab 522 PRINTS PR00740 Glycosyl hydrolase family 27 signature 175 193 1.2E-63 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_34915 2dc9987a8d021586ce8cd6d0958277ab 522 PRINTS PR00740 Glycosyl hydrolase family 27 signature 33 52 1.2E-63 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_34915 2dc9987a8d021586ce8cd6d0958277ab 522 PRINTS PR00740 Glycosyl hydrolase family 27 signature 71 86 1.2E-63 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_34915 2dc9987a8d021586ce8cd6d0958277ab 522 PRINTS PR00740 Glycosyl hydrolase family 27 signature 112 133 1.2E-63 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_34915 2dc9987a8d021586ce8cd6d0958277ab 522 PRINTS PR00740 Glycosyl hydrolase family 27 signature 261 282 1.2E-63 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_20605 5edd829aaad10855bf3509dec8be0858 369 SUPERFAMILY SSF53901 215 337 1.84E-9 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_20605 5edd829aaad10855bf3509dec8be0858 369 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 10 229 6.1E-19 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal RAM_20605 5edd829aaad10855bf3509dec8be0858 369 Gene3D G3DSA:3.40.47.10 5 232 4.1E-37 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_20605 5edd829aaad10855bf3509dec8be0858 369 SUPERFAMILY SSF53901 10 230 4.14E-39 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_08745 2ae4c9435a5dfe6785be44ce42f7e768 220 SUPERFAMILY SSF55781 63 220 6.47E-37 T 13-10-2018 RAM_08745 2ae4c9435a5dfe6785be44ce42f7e768 220 Gene3D G3DSA:3.30.450.40 60 219 1.2E-37 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_08745 2ae4c9435a5dfe6785be44ce42f7e768 220 Gene3D G3DSA:1.10.10.10 1 59 5.2E-12 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_08745 2ae4c9435a5dfe6785be44ce42f7e768 220 SUPERFAMILY SSF46785 3 59 1.77E-9 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_08745 2ae4c9435a5dfe6785be44ce42f7e768 220 Pfam PF01614 Bacterial transcriptional regulator 111 217 3.2E-17 T 13-10-2018 IPR014757 Transcription regulator IclR, C-terminal RAM_08745 2ae4c9435a5dfe6785be44ce42f7e768 220 SMART SM00346 1 79 1.4E-15 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RAM_08745 2ae4c9435a5dfe6785be44ce42f7e768 220 Pfam PF09339 IclR helix-turn-helix domain 2 43 1.8E-9 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RAM_27880 e11591f0c7a190f0450c97b6026da1d1 361 SUPERFAMILY SSF53067 119 354 7.22E-65 T 13-10-2018 RAM_27880 e11591f0c7a190f0450c97b6026da1d1 361 PRINTS PR00471 Acetate kinase family signature 3 14 1.9E-23 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RAM_27880 e11591f0c7a190f0450c97b6026da1d1 361 PRINTS PR00471 Acetate kinase family signature 262 275 1.9E-23 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RAM_27880 e11591f0c7a190f0450c97b6026da1d1 361 PRINTS PR00471 Acetate kinase family signature 336 348 1.9E-23 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RAM_27880 e11591f0c7a190f0450c97b6026da1d1 361 PRINTS PR00471 Acetate kinase family signature 284 300 1.9E-23 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RAM_27880 e11591f0c7a190f0450c97b6026da1d1 361 PRINTS PR00471 Acetate kinase family signature 165 186 1.9E-23 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RAM_27880 e11591f0c7a190f0450c97b6026da1d1 361 Hamap MF_00020 Acetate kinase [ackA]. 1 361 107.715 T 13-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RAM_27880 e11591f0c7a190f0450c97b6026da1d1 361 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 165 182 - T 13-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RAM_27880 e11591f0c7a190f0450c97b6026da1d1 361 Gene3D G3DSA:3.30.420.40 158 360 1.9E-56 T 13-10-2018 RAM_27880 e11591f0c7a190f0450c97b6026da1d1 361 SUPERFAMILY SSF53067 2 157 2.91E-40 T 13-10-2018 RAM_27880 e11591f0c7a190f0450c97b6026da1d1 361 PIRSF PIRSF000722 22 358 4.7E-95 T 13-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RAM_27880 e11591f0c7a190f0450c97b6026da1d1 361 PIRSF PIRSF000722 1 30 1.6 T 13-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RAM_27880 e11591f0c7a190f0450c97b6026da1d1 361 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 3 14 - T 13-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RAM_27880 e11591f0c7a190f0450c97b6026da1d1 361 Pfam PF00871 Acetokinase family 41 348 5.4E-88 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RAM_27880 e11591f0c7a190f0450c97b6026da1d1 361 Gene3D G3DSA:3.30.420.40 1 157 2.5E-41 T 13-10-2018 RAM_20670 5af10b8c1d22617e3f82f14ffcf90815 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 2.9E-15 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_20670 5af10b8c1d22617e3f82f14ffcf90815 299 SUPERFAMILY SSF46785 3 80 3.37E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_20670 5af10b8c1d22617e3f82f14ffcf90815 299 Gene3D G3DSA:3.40.190.10 92 288 9.0E-50 T 13-10-2018 RAM_20670 5af10b8c1d22617e3f82f14ffcf90815 299 Gene3D G3DSA:1.10.10.10 1 83 1.2E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_20670 5af10b8c1d22617e3f82f14ffcf90815 299 Pfam PF03466 LysR substrate binding domain 91 293 7.7E-27 T 13-10-2018 IPR005119 LysR, substrate-binding RAM_20670 5af10b8c1d22617e3f82f14ffcf90815 299 SUPERFAMILY SSF53850 91 291 1.39E-37 T 13-10-2018 RAM_20670 5af10b8c1d22617e3f82f14ffcf90815 299 Gene3D G3DSA:3.40.190.10 167 264 9.0E-50 T 13-10-2018 RAM_09335 9a9085750481dc25f0890215dd607ade 337 Pfam PF02653 Branched-chain amino acid transport system / permease component 52 325 1.1E-42 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 RAM_34160 615bacbd6f91699a25980027e0195cd8 231 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 41 206 6.6E-41 T 13-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 RAM_34160 615bacbd6f91699a25980027e0195cd8 231 TIGRFAM TIGR00434 cysH: phosophoadenylyl-sulfate reductase 23 230 8.5E-61 T 13-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 RAM_34160 615bacbd6f91699a25980027e0195cd8 231 Gene3D G3DSA:3.40.50.620 2 231 6.5E-65 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAM_34160 615bacbd6f91699a25980027e0195cd8 231 SUPERFAMILY SSF52402 14 195 2.57E-41 T 13-10-2018 RAM_34160 615bacbd6f91699a25980027e0195cd8 231 PIRSF PIRSF000857 2 231 1.0E-88 T 13-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 RAM_34160 615bacbd6f91699a25980027e0195cd8 231 TIGRFAM TIGR02055 APS_reductase: adenylylsulfate reductase, thioredoxin dependent 42 229 8.2E-71 T 13-10-2018 IPR011798 Adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019344|GO:0055114 KEGG: 00920+1.8.4.8 RAM_00920 b03de7f00394110425d91e81a05681b7 302 Pfam PF01842 ACT domain 196 255 4.2E-9 T 13-10-2018 IPR002912 ACT domain RAM_00920 b03de7f00394110425d91e81a05681b7 302 Gene3D G3DSA:3.40.190.10 1 88 8.5E-29 T 13-10-2018 RAM_00920 b03de7f00394110425d91e81a05681b7 302 PIRSF PIRSF001500 1 271 7.3E-62 T 13-10-2018 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 RAM_00920 b03de7f00394110425d91e81a05681b7 302 SUPERFAMILY SSF53850 3 184 3.8E-49 T 13-10-2018 RAM_00920 b03de7f00394110425d91e81a05681b7 302 SUPERFAMILY SSF55021 172 269 6.7E-21 T 13-10-2018 RAM_00920 b03de7f00394110425d91e81a05681b7 302 Gene3D G3DSA:3.30.70.260 180 276 3.9E-28 T 13-10-2018 RAM_00920 b03de7f00394110425d91e81a05681b7 302 ProSitePatterns PS00857 Prephenate dehydratase signature 1. 153 175 - T 13-10-2018 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 RAM_00920 b03de7f00394110425d91e81a05681b7 302 Gene3D G3DSA:3.40.190.10 89 167 8.2E-23 T 13-10-2018 RAM_00920 b03de7f00394110425d91e81a05681b7 302 Pfam PF00800 Prephenate dehydratase 4 178 1.4E-50 T 13-10-2018 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 RAM_20855 7a337a1e749fd8b001657645f13f4a83 442 SMART SM00637 346 439 3.6E-27 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_20855 7a337a1e749fd8b001657645f13f4a83 442 Pfam PF00553 Cellulose binding domain 346 432 3.2E-19 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_20855 7a337a1e749fd8b001657645f13f4a83 442 SUPERFAMILY SSF50685 39 230 6.63E-8 T 13-10-2018 IPR036908 RlpA-like domain superfamily RAM_20855 7a337a1e749fd8b001657645f13f4a83 442 Gene3D G3DSA:2.60.40.290 344 441 9.4E-23 T 13-10-2018 IPR012291 CBM2, carbohydrate-binding domain superfamily GO:0004553|GO:0030247 RAM_20855 7a337a1e749fd8b001657645f13f4a83 442 SUPERFAMILY SSF49384 341 438 2.09E-24 T 13-10-2018 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily GO:0030246 RAM_22805 9c4fb7b379b8848851a0bf804ce03c70 399 Gene3D G3DSA:3.50.50.60 3 333 1.6E-54 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_22805 9c4fb7b379b8848851a0bf804ce03c70 399 Gene3D G3DSA:3.30.9.50 43 268 1.6E-54 T 13-10-2018 RAM_22805 9c4fb7b379b8848851a0bf804ce03c70 399 Pfam PF01494 FAD binding domain 1 314 7.9E-40 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_22805 9c4fb7b379b8848851a0bf804ce03c70 399 SUPERFAMILY SSF51905 2 348 1.8E-50 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_22805 9c4fb7b379b8848851a0bf804ce03c70 399 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 291 307 4.8E-18 T 13-10-2018 RAM_22805 9c4fb7b379b8848851a0bf804ce03c70 399 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 2 24 4.8E-18 T 13-10-2018 RAM_22805 9c4fb7b379b8848851a0bf804ce03c70 399 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 148 163 4.8E-18 T 13-10-2018 RAM_22805 9c4fb7b379b8848851a0bf804ce03c70 399 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 276 291 4.8E-18 T 13-10-2018 RAM_00970 4f73803fd875f17cb3b412c7e4461cc8 301 Pfam PF00561 alpha/beta hydrolase fold 47 163 2.6E-21 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_00970 4f73803fd875f17cb3b412c7e4461cc8 301 PRINTS PR00111 Alpha/beta hydrolase fold signature 134 147 3.4E-9 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_00970 4f73803fd875f17cb3b412c7e4461cc8 301 PRINTS PR00111 Alpha/beta hydrolase fold signature 120 133 3.4E-9 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_00970 4f73803fd875f17cb3b412c7e4461cc8 301 PRINTS PR00111 Alpha/beta hydrolase fold signature 73 88 3.4E-9 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_00970 4f73803fd875f17cb3b412c7e4461cc8 301 SUPERFAMILY SSF53474 15 300 2.4E-54 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_00970 4f73803fd875f17cb3b412c7e4461cc8 301 Gene3D G3DSA:3.40.50.1820 2 300 7.9E-80 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_00970 4f73803fd875f17cb3b412c7e4461cc8 301 PRINTS PR00412 Epoxide hydrolase signature 120 133 1.0E-16 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_00970 4f73803fd875f17cb3b412c7e4461cc8 301 PRINTS PR00412 Epoxide hydrolase signature 73 88 1.0E-16 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_00970 4f73803fd875f17cb3b412c7e4461cc8 301 PRINTS PR00412 Epoxide hydrolase signature 276 298 1.0E-16 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_00970 4f73803fd875f17cb3b412c7e4461cc8 301 PRINTS PR00412 Epoxide hydrolase signature 53 71 1.0E-16 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_43905 ff9fac0496aed59807601246fb64174e 542 PRINTS PR00298 60kDa chaperonin signature 348 373 2.6E-70 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RAM_43905 ff9fac0496aed59807601246fb64174e 542 PRINTS PR00298 60kDa chaperonin signature 266 289 2.6E-70 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RAM_43905 ff9fac0496aed59807601246fb64174e 542 PRINTS PR00298 60kDa chaperonin signature 82 109 2.6E-70 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RAM_43905 ff9fac0496aed59807601246fb64174e 542 PRINTS PR00298 60kDa chaperonin signature 26 52 2.6E-70 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RAM_43905 ff9fac0496aed59807601246fb64174e 542 PRINTS PR00298 60kDa chaperonin signature 396 417 2.6E-70 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RAM_43905 ff9fac0496aed59807601246fb64174e 542 Hamap MF_00600 60 kDa chaperonin [groL]. 1 540 40.945 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RAM_43905 ff9fac0496aed59807601246fb64174e 542 Gene3D G3DSA:1.10.560.10 7 519 1.1E-220 T 13-10-2018 IPR027413 GroEL-like equatorial domain superfamily RAM_43905 ff9fac0496aed59807601246fb64174e 542 SUPERFAMILY SSF48592 6 519 1.45E-71 T 13-10-2018 IPR027413 GroEL-like equatorial domain superfamily RAM_43905 ff9fac0496aed59807601246fb64174e 542 ProSitePatterns PS00296 Chaperonins cpn60 signature. 403 414 - T 13-10-2018 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RAM_43905 ff9fac0496aed59807601246fb64174e 542 Pfam PF00118 TCP-1/cpn60 chaperonin family 22 523 6.3E-93 T 13-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 RAM_43905 ff9fac0496aed59807601246fb64174e 542 TIGRFAM TIGR02348 GroEL: chaperonin GroL 2 525 2.1E-246 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RAM_43905 ff9fac0496aed59807601246fb64174e 542 Gene3D G3DSA:3.30.260.10 135 408 1.1E-220 T 13-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily RAM_43905 ff9fac0496aed59807601246fb64174e 542 SUPERFAMILY SSF54849 137 201 6.64E-25 T 13-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily RAM_43905 ff9fac0496aed59807601246fb64174e 542 Gene3D G3DSA:3.50.7.10 190 370 1.1E-220 T 13-10-2018 IPR027409 GroEL-like apical domain superfamily RAM_43905 ff9fac0496aed59807601246fb64174e 542 SUPERFAMILY SSF52029 184 374 3.29E-82 T 13-10-2018 IPR027409 GroEL-like apical domain superfamily RAM_22020 b9192fda58847141d68b316a9afca54e 342 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 238 247 4.5E-7 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RAM_22020 b9192fda58847141d68b316a9afca54e 342 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 153 160 4.5E-7 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RAM_22020 b9192fda58847141d68b316a9afca54e 342 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 213 232 4.5E-7 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RAM_22020 b9192fda58847141d68b316a9afca54e 342 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 304 312 4.5E-7 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RAM_22020 b9192fda58847141d68b316a9afca54e 342 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 250 261 4.5E-7 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RAM_22020 b9192fda58847141d68b316a9afca54e 342 SUPERFAMILY SSF52343 193 334 7.99E-41 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RAM_22020 b9192fda58847141d68b316a9afca54e 342 SUPERFAMILY SSF54292 4 102 1.97E-22 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RAM_22020 b9192fda58847141d68b316a9afca54e 342 SUPERFAMILY SSF63380 103 207 1.53E-25 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RAM_22020 b9192fda58847141d68b316a9afca54e 342 Pfam PF00970 Oxidoreductase FAD-binding domain 111 202 1.2E-17 T 13-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 RAM_22020 b9192fda58847141d68b316a9afca54e 342 Pfam PF00175 Oxidoreductase NAD-binding domain 214 317 2.9E-22 T 13-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 RAM_22020 b9192fda58847141d68b316a9afca54e 342 PRINTS PR00410 Phenol hydroxylase reductase family signature 197 206 2.4E-25 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RAM_22020 b9192fda58847141d68b316a9afca54e 342 PRINTS PR00410 Phenol hydroxylase reductase family signature 213 232 2.4E-25 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RAM_22020 b9192fda58847141d68b316a9afca54e 342 PRINTS PR00410 Phenol hydroxylase reductase family signature 153 160 2.4E-25 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RAM_22020 b9192fda58847141d68b316a9afca54e 342 PRINTS PR00410 Phenol hydroxylase reductase family signature 238 247 2.4E-25 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RAM_22020 b9192fda58847141d68b316a9afca54e 342 PRINTS PR00410 Phenol hydroxylase reductase family signature 136 148 2.4E-25 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RAM_22020 b9192fda58847141d68b316a9afca54e 342 PRINTS PR00410 Phenol hydroxylase reductase family signature 304 312 2.4E-25 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RAM_22020 b9192fda58847141d68b316a9afca54e 342 Gene3D G3DSA:3.10.20.30 2 97 8.0E-19 T 13-10-2018 IPR012675 Beta-grasp domain superfamily RAM_22020 b9192fda58847141d68b316a9afca54e 342 Gene3D G3DSA:3.40.50.80 202 341 8.2E-38 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RAM_22020 b9192fda58847141d68b316a9afca54e 342 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 10 83 1.6E-9 T 13-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RAM_22020 b9192fda58847141d68b316a9afca54e 342 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 39 47 - T 13-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RAM_22020 b9192fda58847141d68b316a9afca54e 342 Gene3D G3DSA:2.40.30.10 102 200 4.4E-25 T 13-10-2018 RAM_31510 08947f8ff7d6f5c2777cfe726d6672f6 204 Pfam PF03861 ANTAR domain 148 199 2.3E-22 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 RAM_31510 08947f8ff7d6f5c2777cfe726d6672f6 204 Pfam PF00072 Response regulator receiver domain 19 128 1.5E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_31510 08947f8ff7d6f5c2777cfe726d6672f6 204 SMART SM01012 144 199 1.6E-26 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 RAM_31510 08947f8ff7d6f5c2777cfe726d6672f6 204 Gene3D G3DSA:1.10.10.10 146 204 4.1E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_31510 08947f8ff7d6f5c2777cfe726d6672f6 204 SMART SM00448 17 128 2.4E-35 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_31510 08947f8ff7d6f5c2777cfe726d6672f6 204 SUPERFAMILY SSF52172 15 199 3.56E-58 T 13-10-2018 IPR011006 CheY-like superfamily RAM_31510 08947f8ff7d6f5c2777cfe726d6672f6 204 Gene3D G3DSA:3.40.50.2300 6 145 1.3E-36 T 13-10-2018 RAM_31510 08947f8ff7d6f5c2777cfe726d6672f6 204 PIRSF PIRSF036382 6 204 7.4E-72 T 13-10-2018 IPR008327 Signal transduction response regulator, antiterminator RAM_25025 521035b145522c5fdcbd6af73c9ee0ef 479 Pfam PF06029 AlkA N-terminal domain 190 305 1.2E-29 T 13-10-2018 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal RAM_25025 521035b145522c5fdcbd6af73c9ee0ef 479 SUPERFAMILY SSF57884 2 74 1.2E-28 T 13-10-2018 IPR035451 Ada-like domain superfamily RAM_25025 521035b145522c5fdcbd6af73c9ee0ef 479 Gene3D G3DSA:1.10.10.60 75 181 3.1E-15 T 13-10-2018 RAM_25025 521035b145522c5fdcbd6af73c9ee0ef 479 Gene3D G3DSA:1.10.340.30 308 420 5.7E-29 T 13-10-2018 RAM_25025 521035b145522c5fdcbd6af73c9ee0ef 479 SUPERFAMILY SSF46689 129 178 7.62E-7 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_25025 521035b145522c5fdcbd6af73c9ee0ef 479 Gene3D G3DSA:3.40.10.10 1 65 3.5E-27 T 13-10-2018 IPR035451 Ada-like domain superfamily RAM_25025 521035b145522c5fdcbd6af73c9ee0ef 479 SMART SM00478 315 470 1.8E-23 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 RAM_25025 521035b145522c5fdcbd6af73c9ee0ef 479 Pfam PF02805 Metal binding domain of Ada 2 63 8.0E-28 T 13-10-2018 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 RAM_25025 521035b145522c5fdcbd6af73c9ee0ef 479 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 129 171 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RAM_25025 521035b145522c5fdcbd6af73c9ee0ef 479 SMART SM01009 190 305 1.1E-44 T 13-10-2018 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal RAM_25025 521035b145522c5fdcbd6af73c9ee0ef 479 Gene3D G3DSA:3.30.310.20 190 305 8.0E-23 T 13-10-2018 IPR037046 DNA-3-methyladenine glycosylase AlkA, N-terminal domain superfamily RAM_25025 521035b145522c5fdcbd6af73c9ee0ef 479 SUPERFAMILY SSF48150 296 467 1.48E-38 T 13-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 RAM_25025 521035b145522c5fdcbd6af73c9ee0ef 479 SMART SM00342 92 175 1.1E-14 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_25025 521035b145522c5fdcbd6af73c9ee0ef 479 Pfam PF12833 Helix-turn-helix domain 98 177 3.4E-16 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_25025 521035b145522c5fdcbd6af73c9ee0ef 479 Gene3D G3DSA:1.10.1670.10 422 474 9.0E-15 T 13-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 RAM_25025 521035b145522c5fdcbd6af73c9ee0ef 479 SUPERFAMILY SSF55945 190 286 2.82E-25 T 13-10-2018 RAM_03545 e1f2cecede1cb5decfd50cea0476a81a 215 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 49 200 5.6E-67 T 13-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 RAM_03545 e1f2cecede1cb5decfd50cea0476a81a 215 Gene3D G3DSA:3.30.230.10 113 203 5.1E-34 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RAM_03545 e1f2cecede1cb5decfd50cea0476a81a 215 Pfam PF03719 Ribosomal protein S5, C-terminal domain 123 194 1.5E-27 T 13-10-2018 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 RAM_03545 e1f2cecede1cb5decfd50cea0476a81a 215 Gene3D G3DSA:3.30.160.20 44 109 4.6E-29 T 13-10-2018 RAM_03545 e1f2cecede1cb5decfd50cea0476a81a 215 Pfam PF00333 Ribosomal protein S5, N-terminal domain 50 112 1.0E-27 T 13-10-2018 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 RAM_03545 e1f2cecede1cb5decfd50cea0476a81a 215 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 24 200 34.262 T 13-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 RAM_03545 e1f2cecede1cb5decfd50cea0476a81a 215 SUPERFAMILY SSF54768 48 113 2.93E-22 T 13-10-2018 RAM_03545 e1f2cecede1cb5decfd50cea0476a81a 215 SUPERFAMILY SSF54211 116 195 2.53E-24 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RAM_03545 e1f2cecede1cb5decfd50cea0476a81a 215 ProSitePatterns PS00585 Ribosomal protein S5 signature. 65 97 - T 13-10-2018 IPR018192 Ribosomal protein S5, N-terminal, conserved site RAM_23905 7084a16eed485dc8cff0f6654f8f4170 311 SUPERFAMILY SSF46689 260 310 5.73E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_23905 7084a16eed485dc8cff0f6654f8f4170 311 Gene3D G3DSA:1.10.10.60 266 311 2.9E-12 T 13-10-2018 RAM_23905 7084a16eed485dc8cff0f6654f8f4170 311 SMART SM00342 224 308 7.0E-31 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_23905 7084a16eed485dc8cff0f6654f8f4170 311 Pfam PF12852 Cupin 2 192 6.2E-51 T 13-10-2018 IPR032783 AraC-type transcription regulator, ligand-binding domain RAM_23905 7084a16eed485dc8cff0f6654f8f4170 311 Pfam PF12833 Helix-turn-helix domain 230 310 1.1E-20 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_23905 7084a16eed485dc8cff0f6654f8f4170 311 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 261 304 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RAM_23905 7084a16eed485dc8cff0f6654f8f4170 311 Gene3D G3DSA:1.10.10.60 205 265 1.2E-13 T 13-10-2018 RAM_23905 7084a16eed485dc8cff0f6654f8f4170 311 SUPERFAMILY SSF46689 207 258 7.17E-9 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_40705 a659a1503a13298c54900359c634bb93 439 SUPERFAMILY SSF158414 90 146 2.75E-5 T 13-10-2018 IPR029013 HP0062-like domain superfamily RAM_16060 49ddc3ef90a7ef054df7dc67f9b9639a 482 Gene3D G3DSA:3.30.565.10 356 479 2.1E-36 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_16060 49ddc3ef90a7ef054df7dc67f9b9639a 482 SUPERFAMILY SSF158472 190 238 3.27E-8 T 13-10-2018 RAM_16060 49ddc3ef90a7ef054df7dc67f9b9639a 482 SUPERFAMILY SSF55874 308 477 5.63E-37 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_16060 49ddc3ef90a7ef054df7dc67f9b9639a 482 SMART SM00304 187 241 2.4E-13 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_16060 49ddc3ef90a7ef054df7dc67f9b9639a 482 SMART SM00387 366 479 3.4E-33 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_16060 49ddc3ef90a7ef054df7dc67f9b9639a 482 PRINTS PR00344 Bacterial sensor protein C-terminal signature 421 431 6.3E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_16060 49ddc3ef90a7ef054df7dc67f9b9639a 482 PRINTS PR00344 Bacterial sensor protein C-terminal signature 463 476 6.3E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_16060 49ddc3ef90a7ef054df7dc67f9b9639a 482 PRINTS PR00344 Bacterial sensor protein C-terminal signature 439 457 6.3E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_16060 49ddc3ef90a7ef054df7dc67f9b9639a 482 PRINTS PR00344 Bacterial sensor protein C-terminal signature 403 417 6.3E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_16060 49ddc3ef90a7ef054df7dc67f9b9639a 482 Gene3D G3DSA:1.20.1480.50 148 244 2.8E-9 T 13-10-2018 RAM_16060 49ddc3ef90a7ef054df7dc67f9b9639a 482 Pfam PF00512 His Kinase A (phospho-acceptor) domain 250 315 9.4E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_16060 49ddc3ef90a7ef054df7dc67f9b9639a 482 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 367 477 1.0E-21 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_16060 49ddc3ef90a7ef054df7dc67f9b9639a 482 Gene3D G3DSA:1.10.287.130 245 316 8.1E-19 T 13-10-2018 RAM_16060 49ddc3ef90a7ef054df7dc67f9b9639a 482 SMART SM00388 249 316 3.3E-15 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_16060 49ddc3ef90a7ef054df7dc67f9b9639a 482 SUPERFAMILY SSF47384 235 314 1.35E-15 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RAM_16060 49ddc3ef90a7ef054df7dc67f9b9639a 482 Pfam PF00672 HAMP domain 188 238 2.2E-11 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_29000 6d8bca8d5cb1b272033663240e98083f 278 PRINTS PR00412 Epoxide hydrolase signature 248 270 7.6E-9 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_29000 6d8bca8d5cb1b272033663240e98083f 278 PRINTS PR00412 Epoxide hydrolase signature 104 117 7.6E-9 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_29000 6d8bca8d5cb1b272033663240e98083f 278 PRINTS PR00412 Epoxide hydrolase signature 27 45 7.6E-9 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_29000 6d8bca8d5cb1b272033663240e98083f 278 PRINTS PR00412 Epoxide hydrolase signature 47 62 7.6E-9 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_29000 6d8bca8d5cb1b272033663240e98083f 278 SUPERFAMILY SSF53474 5 273 1.88E-49 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_29000 6d8bca8d5cb1b272033663240e98083f 278 Pfam PF12697 Alpha/beta hydrolase family 23 265 1.1E-22 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_29000 6d8bca8d5cb1b272033663240e98083f 278 Gene3D G3DSA:3.40.50.1820 2 274 3.5E-50 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_32740 587e5531d1ade3624b783d566e2b77ed 263 SUPERFAMILY SSF55961 117 260 2.24E-28 T 13-10-2018 RAM_32740 587e5531d1ade3624b783d566e2b77ed 263 SUPERFAMILY SSF46785 1 149 3.35E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_32740 587e5531d1ade3624b783d566e2b77ed 263 Gene3D G3DSA:1.10.10.10 1 91 1.5E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_32740 587e5531d1ade3624b783d566e2b77ed 263 SMART SM00418 3 80 9.3E-13 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_32740 587e5531d1ade3624b783d566e2b77ed 263 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 128 258 3.8E-18 T 13-10-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like RAM_32740 587e5531d1ade3624b783d566e2b77ed 263 Gene3D G3DSA:3.30.530.20 107 262 1.0E-31 T 13-10-2018 IPR023393 START-like domain superfamily RAM_32740 587e5531d1ade3624b783d566e2b77ed 263 Pfam PF12840 Helix-turn-helix domain 2 56 2.3E-11 T 13-10-2018 RAM_03490 26e19a08090438d88ef10b892143d308 279 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 206 37.738 T 13-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 RAM_03490 26e19a08090438d88ef10b892143d308 279 Gene3D G3DSA:3.30.300.20 17 106 8.3E-32 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta RAM_03490 26e19a08090438d88ef10b892143d308 279 Pfam PF00189 Ribosomal protein S3, C-terminal domain 119 202 4.4E-35 T 13-10-2018 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_03490 26e19a08090438d88ef10b892143d308 279 Pfam PF07650 KH domain 37 109 3.0E-19 T 13-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_03490 26e19a08090438d88ef10b892143d308 279 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 208 1.5E-92 T 13-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 RAM_03490 26e19a08090438d88ef10b892143d308 279 Gene3D G3DSA:3.30.1140.32 107 208 4.4E-38 T 13-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_03490 26e19a08090438d88ef10b892143d308 279 SMART SM00322 59 124 4.0E-8 T 13-10-2018 IPR004087 K Homology domain GO:0003676 RAM_03490 26e19a08090438d88ef10b892143d308 279 SUPERFAMILY SSF54814 2 105 1.23E-36 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 RAM_03490 26e19a08090438d88ef10b892143d308 279 ProSitePatterns PS00548 Ribosomal protein S3 signature. 163 197 - T 13-10-2018 IPR018280 Ribosomal protein S3, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_03490 26e19a08090438d88ef10b892143d308 279 SUPERFAMILY SSF54821 106 206 1.09E-35 T 13-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_12600 e0ca70c644b3aeb961c0badeca86a6e4 383 SUPERFAMILY SSF56645 10 247 2.36E-85 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_12600 e0ca70c644b3aeb961c0badeca86a6e4 383 Gene3D G3DSA:2.40.110.10 126 239 1.7E-43 T 13-10-2018 RAM_12600 e0ca70c644b3aeb961c0badeca86a6e4 383 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 127 222 2.6E-28 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RAM_12600 e0ca70c644b3aeb961c0badeca86a6e4 383 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 235 383 2.3E-43 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_12600 e0ca70c644b3aeb961c0badeca86a6e4 383 Gene3D G3DSA:1.20.140.10 240 383 3.2E-44 T 13-10-2018 RAM_12600 e0ca70c644b3aeb961c0badeca86a6e4 383 PIRSF PIRSF016578 7 373 8.0E-16 T 13-10-2018 RAM_12600 e0ca70c644b3aeb961c0badeca86a6e4 383 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 12 123 3.2E-31 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_12600 e0ca70c644b3aeb961c0badeca86a6e4 383 SUPERFAMILY SSF47203 234 383 4.51E-48 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_12600 e0ca70c644b3aeb961c0badeca86a6e4 383 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 342 361 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RAM_12600 e0ca70c644b3aeb961c0badeca86a6e4 383 Gene3D G3DSA:1.10.540.10 8 125 5.5E-33 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_16360 036f1c3e4e38b3b204e7b96776980916 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 1.1E-23 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_16360 036f1c3e4e38b3b204e7b96776980916 311 Gene3D G3DSA:3.40.190.290 90 292 1.3E-48 T 13-10-2018 RAM_16360 036f1c3e4e38b3b204e7b96776980916 311 Gene3D G3DSA:1.10.10.10 1 84 3.4E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_16360 036f1c3e4e38b3b204e7b96776980916 311 Pfam PF03466 LysR substrate binding domain 88 286 1.1E-44 T 13-10-2018 IPR005119 LysR, substrate-binding RAM_16360 036f1c3e4e38b3b204e7b96776980916 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 6.8E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_16360 036f1c3e4e38b3b204e7b96776980916 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 6.8E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_16360 036f1c3e4e38b3b204e7b96776980916 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 6.8E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_16360 036f1c3e4e38b3b204e7b96776980916 311 SUPERFAMILY SSF46785 1 111 7.13E-25 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_16360 036f1c3e4e38b3b204e7b96776980916 311 SUPERFAMILY SSF53850 90 293 2.79E-42 T 13-10-2018 RAM_13995 d1367a9efc9a0b62706fae6ddcb35b10 282 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 94 107 - T 13-10-2018 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RAM_13995 d1367a9efc9a0b62706fae6ddcb35b10 282 TIGRFAM TIGR02127 pyrF_sub2: orotidine 5'-phosphate decarboxylase 7 266 9.5E-79 T 13-10-2018 IPR011995 Orotidine 5'-phosphate decarboxylase, type 2 GO:0004590|GO:0006221 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RAM_13995 d1367a9efc9a0b62706fae6ddcb35b10 282 SUPERFAMILY SSF51366 7 273 6.16E-58 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 RAM_13995 d1367a9efc9a0b62706fae6ddcb35b10 282 SMART SM00934 20 266 1.8E-31 T 13-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RAM_13995 d1367a9efc9a0b62706fae6ddcb35b10 282 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 21 265 3.5E-33 T 13-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RAM_13995 d1367a9efc9a0b62706fae6ddcb35b10 282 Gene3D G3DSA:3.20.20.70 6 277 1.2E-84 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_00550 989d756e9f4dfc44a5db25c6bbd06c09 294 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 58 167 1.9E-7 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RAM_00550 989d756e9f4dfc44a5db25c6bbd06c09 294 SUPERFAMILY SSF54593 54 171 2.55E-23 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_00550 989d756e9f4dfc44a5db25c6bbd06c09 294 SUPERFAMILY SSF54593 189 292 4.3E-14 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_00550 989d756e9f4dfc44a5db25c6bbd06c09 294 Gene3D G3DSA:3.30.720.110 120 178 1.3E-11 T 13-10-2018 RAM_00550 989d756e9f4dfc44a5db25c6bbd06c09 294 Gene3D G3DSA:3.30.720.120 52 115 7.9E-8 T 13-10-2018 RAM_00550 989d756e9f4dfc44a5db25c6bbd06c09 294 Gene3D G3DSA:3.10.180.10 187 291 1.5E-13 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_07010 533af2c3d24cd54e2c0cad8c900d0859 188 SUPERFAMILY SSF46689 3 79 2.29E-21 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_07010 533af2c3d24cd54e2c0cad8c900d0859 188 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 7 20 1.6E-12 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_07010 533af2c3d24cd54e2c0cad8c900d0859 188 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 51 1.6E-12 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_07010 533af2c3d24cd54e2c0cad8c900d0859 188 Pfam PF00440 Bacterial regulatory proteins, tetR family 8 53 1.6E-21 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_07010 533af2c3d24cd54e2c0cad8c900d0859 188 ProSitePatterns PS01081 TetR-type HTH domain signature. 19 50 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RAM_07010 533af2c3d24cd54e2c0cad8c900d0859 188 Gene3D G3DSA:1.10.357.10 48 187 1.6E-28 T 13-10-2018 RAM_07010 533af2c3d24cd54e2c0cad8c900d0859 188 SUPERFAMILY SSF48498 77 187 1.68E-17 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_07010 533af2c3d24cd54e2c0cad8c900d0859 188 Gene3D G3DSA:1.10.10.60 2 47 5.9E-21 T 13-10-2018 RAM_27500 bd762d17b67802c0108cdb6f33af690c 558 SUPERFAMILY SSF47336 486 549 2.45E-12 T 13-10-2018 IPR036736 ACP-like superfamily RAM_27500 bd762d17b67802c0108cdb6f33af690c 558 Gene3D G3DSA:1.10.1200.10 485 549 1.0E-15 T 13-10-2018 IPR036736 ACP-like superfamily RAM_27500 bd762d17b67802c0108cdb6f33af690c 558 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 30 411 1.3E-106 T 13-10-2018 IPR010071 Amino acid adenylation domain RAM_27500 bd762d17b67802c0108cdb6f33af690c 558 Pfam PF00550 Phosphopantetheine attachment site 487 549 1.7E-8 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_27500 bd762d17b67802c0108cdb6f33af690c 558 Pfam PF00501 AMP-binding enzyme 11 387 1.2E-79 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_27500 bd762d17b67802c0108cdb6f33af690c 558 Gene3D G3DSA:3.40.50.12780 2 379 7.8E-103 T 13-10-2018 RAM_27500 bd762d17b67802c0108cdb6f33af690c 558 PRINTS PR00154 AMP-binding signature 134 145 7.0E-5 T 13-10-2018 IPR020459 AMP-binding RAM_27500 bd762d17b67802c0108cdb6f33af690c 558 PRINTS PR00154 AMP-binding signature 146 154 7.0E-5 T 13-10-2018 IPR020459 AMP-binding RAM_27500 bd762d17b67802c0108cdb6f33af690c 558 ProSitePatterns PS00455 Putative AMP-binding domain signature. 139 150 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_27500 bd762d17b67802c0108cdb6f33af690c 558 SUPERFAMILY SSF56801 3 481 8.24E-127 T 13-10-2018 RAM_27500 bd762d17b67802c0108cdb6f33af690c 558 Gene3D G3DSA:3.30.300.30 381 483 3.1E-29 T 13-10-2018 RAM_27500 bd762d17b67802c0108cdb6f33af690c 558 Pfam PF13193 AMP-binding enzyme C-terminal domain 395 469 3.7E-14 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_12535 a6fcb12633284b6a3f9e64a6e05c9f2b 116 Gene3D G3DSA:1.10.10.10 1 115 1.3E-37 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_12535 a6fcb12633284b6a3f9e64a6e05c9f2b 116 SUPERFAMILY SSF46785 2 102 1.44E-31 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_12535 a6fcb12633284b6a3f9e64a6e05c9f2b 116 Pfam PF01638 HxlR-like helix-turn-helix 14 100 7.3E-31 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type RAM_45590 a30196ca559d602ef3bd454c2315527e 561 Gene3D G3DSA:3.20.20.70 10 385 1.7E-157 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_45590 a30196ca559d602ef3bd454c2315527e 561 SUPERFAMILY SSF110921 453 559 4.05E-37 T 13-10-2018 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 RAM_45590 a30196ca559d602ef3bd454c2315527e 561 Hamap MF_00572 2-isopropylmalate synthase [leuA]. 3 561 55.202 T 13-10-2018 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 RAM_45590 a30196ca559d602ef3bd454c2315527e 561 Gene3D G3DSA:3.30.160.270 449 561 8.2E-38 T 13-10-2018 RAM_45590 a30196ca559d602ef3bd454c2315527e 561 SUPERFAMILY SSF89000 397 447 9.42E-14 T 13-10-2018 RAM_45590 a30196ca559d602ef3bd454c2315527e 561 TIGRFAM TIGR00970 leuA_yeast: 2-isopropylmalate synthase 2 561 6.0E-266 T 13-10-2018 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 RAM_45590 a30196ca559d602ef3bd454c2315527e 561 Gene3D G3DSA:1.10.1220.20 394 447 8.6E-23 T 13-10-2018 RAM_45590 a30196ca559d602ef3bd454c2315527e 561 SUPERFAMILY SSF51569 21 329 9.34E-96 T 13-10-2018 RAM_45590 a30196ca559d602ef3bd454c2315527e 561 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 242 255 - T 13-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 RAM_45590 a30196ca559d602ef3bd454c2315527e 561 SMART SM00917 431 560 1.4E-34 T 13-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 RAM_45590 a30196ca559d602ef3bd454c2315527e 561 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 39 55 - T 13-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 RAM_45590 a30196ca559d602ef3bd454c2315527e 561 Pfam PF08502 LeuA allosteric (dimerisation) domain 431 559 1.3E-30 T 13-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 RAM_45590 a30196ca559d602ef3bd454c2315527e 561 Pfam PF00682 HMGL-like 33 312 1.1E-76 T 13-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 RAM_22900 df2e20721206950d7898d7a0ee27bfd5 773 Gene3D G3DSA:3.40.50.300 102 265 5.8E-26 T 13-10-2018 RAM_22900 df2e20721206950d7898d7a0ee27bfd5 773 Gene3D G3DSA:1.25.40.10 673 772 5.1E-10 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_22900 df2e20721206950d7898d7a0ee27bfd5 773 Pfam PF00931 NB-ARC domain 143 320 3.6E-7 T 13-10-2018 IPR002182 NB-ARC GO:0043531 Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-6798695|Reactome: R-HSA-6803207|Reactome: R-HSA-8953750 RAM_22900 df2e20721206950d7898d7a0ee27bfd5 773 Pfam PF13424 Tetratricopeptide repeat 642 714 2.4E-7 T 13-10-2018 RAM_22900 df2e20721206950d7898d7a0ee27bfd5 773 Gene3D G3DSA:1.25.40.10 482 672 5.1E-21 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_22900 df2e20721206950d7898d7a0ee27bfd5 773 SUPERFAMILY SSF52540 105 325 2.66E-21 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_22900 df2e20721206950d7898d7a0ee27bfd5 773 SUPERFAMILY SSF48452 559 675 4.37E-15 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_22900 df2e20721206950d7898d7a0ee27bfd5 773 PRINTS PR00364 Disease resistance protein signature 221 235 3.1E-9 T 13-10-2018 RAM_22900 df2e20721206950d7898d7a0ee27bfd5 773 PRINTS PR00364 Disease resistance protein signature 308 322 3.1E-9 T 13-10-2018 RAM_22900 df2e20721206950d7898d7a0ee27bfd5 773 PRINTS PR00364 Disease resistance protein signature 142 157 3.1E-9 T 13-10-2018 RAM_22900 df2e20721206950d7898d7a0ee27bfd5 773 SMART SM00028 723 756 16.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_22900 df2e20721206950d7898d7a0ee27bfd5 773 SMART SM00028 683 716 47.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_22900 df2e20721206950d7898d7a0ee27bfd5 773 SMART SM00028 603 636 25.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_22900 df2e20721206950d7898d7a0ee27bfd5 773 SMART SM00028 643 676 0.09 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_22900 df2e20721206950d7898d7a0ee27bfd5 773 SUPERFAMILY SSF48452 641 770 3.79E-14 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_37695 67af592d6591d926c3bfbf7ff9d18b39 39 Gene3D G3DSA:3.10.450.50 1 31 3.3E-5 T 13-10-2018 RAM_33215 d9b136903acacbfcbb8a069ba1d3aaf3 522 Gene3D G3DSA:2.60.120.260 331 513 3.2E-40 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_33215 d9b136903acacbfcbb8a069ba1d3aaf3 522 TIGRFAM TIGR00976 /NonD: hydrolase CocE/NonD family protein 35 496 6.3E-88 T 13-10-2018 IPR005674 CocE/Serine esterase GO:0016787 RAM_33215 d9b136903acacbfcbb8a069ba1d3aaf3 522 SUPERFAMILY SSF53474 16 337 3.55E-45 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_33215 d9b136903acacbfcbb8a069ba1d3aaf3 522 Gene3D G3DSA:3.40.50.1820 34 330 1.8E-73 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_33215 d9b136903acacbfcbb8a069ba1d3aaf3 522 SUPERFAMILY SSF49785 329 515 4.25E-42 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_33215 d9b136903acacbfcbb8a069ba1d3aaf3 522 Pfam PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain 324 504 2.7E-25 T 13-10-2018 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 RAM_33215 d9b136903acacbfcbb8a069ba1d3aaf3 522 SMART SM00939 303 510 7.6E-43 T 13-10-2018 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 RAM_33215 d9b136903acacbfcbb8a069ba1d3aaf3 522 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 39 288 7.6E-57 T 13-10-2018 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 RAM_33215 d9b136903acacbfcbb8a069ba1d3aaf3 522 Gene3D G3DSA:1.10.3020.10 162 239 1.8E-73 T 13-10-2018 RAM_16780 e3a65e9ecd8d8f8df25d951524970c53 614 Gene3D G3DSA:2.80.10.50 555 612 8.1E-10 T 13-10-2018 RAM_16780 e3a65e9ecd8d8f8df25d951524970c53 614 Gene3D G3DSA:2.80.10.50 506 554 2.0E-11 T 13-10-2018 RAM_16780 e3a65e9ecd8d8f8df25d951524970c53 614 Gene3D G3DSA:2.80.10.50 399 505 2.5E-7 T 13-10-2018 RAM_16780 e3a65e9ecd8d8f8df25d951524970c53 614 Pfam PF01229 Glycosyl hydrolases family 39 171 251 4.0E-6 T 13-10-2018 IPR000514 Glycoside hydrolase, family 39 GO:0004553|GO:0005975 Reactome: R-HSA-2024096|Reactome: R-HSA-2024101|Reactome: R-HSA-2206302 RAM_16780 e3a65e9ecd8d8f8df25d951524970c53 614 SMART SM00458 458 609 6.6E-7 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_16780 e3a65e9ecd8d8f8df25d951524970c53 614 Gene3D G3DSA:3.20.20.80 74 345 8.4E-25 T 13-10-2018 RAM_16780 e3a65e9ecd8d8f8df25d951524970c53 614 SUPERFAMILY SSF51445 96 347 4.37E-29 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_16780 e3a65e9ecd8d8f8df25d951524970c53 614 SUPERFAMILY SSF50370 466 608 1.69E-34 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_16780 e3a65e9ecd8d8f8df25d951524970c53 614 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 495 591 1.5E-21 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_02360 d08c4d90c39a78347c5bab6c5922f54b 399 Pfam PF00512 His Kinase A (phospho-acceptor) domain 133 197 6.4E-12 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_02360 d08c4d90c39a78347c5bab6c5922f54b 399 SUPERFAMILY SSF47384 123 196 3.34E-14 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RAM_02360 d08c4d90c39a78347c5bab6c5922f54b 399 PRINTS PR00344 Bacterial sensor protein C-terminal signature 280 294 4.4E-20 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_02360 d08c4d90c39a78347c5bab6c5922f54b 399 PRINTS PR00344 Bacterial sensor protein C-terminal signature 298 308 4.4E-20 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_02360 d08c4d90c39a78347c5bab6c5922f54b 399 PRINTS PR00344 Bacterial sensor protein C-terminal signature 315 333 4.4E-20 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_02360 d08c4d90c39a78347c5bab6c5922f54b 399 PRINTS PR00344 Bacterial sensor protein C-terminal signature 339 352 4.4E-20 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_02360 d08c4d90c39a78347c5bab6c5922f54b 399 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 243 353 2.4E-22 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_02360 d08c4d90c39a78347c5bab6c5922f54b 399 Gene3D G3DSA:1.10.287.130 126 197 6.1E-16 T 13-10-2018 RAM_02360 d08c4d90c39a78347c5bab6c5922f54b 399 SMART SM00388 132 198 3.2E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_02360 d08c4d90c39a78347c5bab6c5922f54b 399 SMART SM00387 243 355 3.6E-37 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_02360 d08c4d90c39a78347c5bab6c5922f54b 399 Gene3D G3DSA:3.30.565.10 205 357 1.5E-40 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_02360 d08c4d90c39a78347c5bab6c5922f54b 399 SUPERFAMILY SSF55874 188 357 1.44E-44 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_42285 cd80cfee31803647bb2900a2e96d030e 584 Gene3D G3DSA:3.30.70.270 399 565 1.9E-51 T 13-10-2018 RAM_42285 cd80cfee31803647bb2900a2e96d030e 584 Pfam PF00990 Diguanylate cyclase, GGDEF domain 401 552 2.0E-41 T 13-10-2018 IPR000160 GGDEF domain RAM_42285 cd80cfee31803647bb2900a2e96d030e 584 SMART SM00267 390 556 5.2E-52 T 13-10-2018 IPR000160 GGDEF domain RAM_42285 cd80cfee31803647bb2900a2e96d030e 584 SUPERFAMILY SSF55073 406 555 3.37E-41 T 13-10-2018 IPR029787 Nucleotide cyclase RAM_42285 cd80cfee31803647bb2900a2e96d030e 584 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 398 554 1.6E-40 T 13-10-2018 IPR000160 GGDEF domain RAM_11950 7967cafa40166e7b8158732601ef211b 621 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 154 164 - T 13-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RAM_11950 7967cafa40166e7b8158732601ef211b 621 Hamap MF_02094 Phosphogluconate dehydratase [edd]. 1 602 57.278 T 13-10-2018 RAM_11950 7967cafa40166e7b8158732601ef211b 621 TIGRFAM TIGR01196 edd: phosphogluconate dehydratase 2 601 5.8E-293 T 13-10-2018 IPR004786 6-phosphogluconate dehydratase GO:0004456|GO:0009255 KEGG: 00030+4.2.1.12 RAM_11950 7967cafa40166e7b8158732601ef211b 621 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 504 515 - T 13-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RAM_11950 7967cafa40166e7b8158732601ef211b 621 Gene3D G3DSA:3.50.30.80 418 567 8.9E-52 T 13-10-2018 RAM_11950 7967cafa40166e7b8158732601ef211b 621 SUPERFAMILY SSF143975 1 417 4.71E-144 T 13-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RAM_11950 7967cafa40166e7b8158732601ef211b 621 Pfam PF00920 Dehydratase family 66 598 1.8E-164 T 13-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RAM_11950 7967cafa40166e7b8158732601ef211b 621 SUPERFAMILY SSF52016 418 600 7.85E-57 T 13-10-2018 RAM_17635 3f5e8fe73ee206e8b6389364fca2dde8 487 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 22 429 9.2E-88 T 13-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 RAM_17635 3f5e8fe73ee206e8b6389364fca2dde8 487 SUPERFAMILY SSF103473 2 473 4.58E-64 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_17635 3f5e8fe73ee206e8b6389364fca2dde8 487 Gene3D G3DSA:1.20.1250.20 274 475 4.4E-16 T 13-10-2018 RAM_17635 3f5e8fe73ee206e8b6389364fca2dde8 487 Pfam PF07690 Major Facilitator Superfamily 26 423 9.2E-51 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_17635 3f5e8fe73ee206e8b6389364fca2dde8 487 Gene3D G3DSA:1.20.1720.10 22 234 4.0E-43 T 13-10-2018 RAM_17635 3f5e8fe73ee206e8b6389364fca2dde8 487 PRINTS PR01036 Tetracycline resistance protein TetB signature 146 170 4.2E-10 T 13-10-2018 RAM_17635 3f5e8fe73ee206e8b6389364fca2dde8 487 PRINTS PR01036 Tetracycline resistance protein TetB signature 25 49 4.2E-10 T 13-10-2018 RAM_17635 3f5e8fe73ee206e8b6389364fca2dde8 487 PRINTS PR01036 Tetracycline resistance protein TetB signature 116 136 4.2E-10 T 13-10-2018 RAM_26500 b6918b55dd86cc6e715a29578b2d4418 210 SUPERFAMILY SSF52141 14 209 1.67E-52 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 RAM_26500 b6918b55dd86cc6e715a29578b2d4418 210 SMART SM00987 39 203 2.5E-36 T 13-10-2018 RAM_26500 b6918b55dd86cc6e715a29578b2d4418 210 SMART SM00986 39 203 2.5E-36 T 13-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 RAM_26500 b6918b55dd86cc6e715a29578b2d4418 210 Gene3D G3DSA:3.40.470.10 5 210 1.1E-58 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 RAM_26500 b6918b55dd86cc6e715a29578b2d4418 210 TIGRFAM TIGR00758 UDG_fam4: uracil-DNA glycosylase, family 4 25 196 2.2E-38 T 13-10-2018 IPR005273 Uracil-DNA glycosylase family 4 RAM_26500 b6918b55dd86cc6e715a29578b2d4418 210 TIGRFAM TIGR03914 UDG_fam_dom: uracil-DNA glycosylase family domain 11 204 9.3E-78 T 13-10-2018 IPR005273 Uracil-DNA glycosylase family 4 RAM_26500 b6918b55dd86cc6e715a29578b2d4418 210 Pfam PF03167 Uracil DNA glycosylase superfamily 39 200 3.2E-36 T 13-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 RAM_34505 80e5bd03fac80126df8de781ac1ceddd 433 SUPERFAMILY SSF103473 3 421 1.83E-47 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_34505 80e5bd03fac80126df8de781ac1ceddd 433 Gene3D G3DSA:1.20.1250.20 239 426 3.2E-15 T 13-10-2018 RAM_34505 80e5bd03fac80126df8de781ac1ceddd 433 Gene3D G3DSA:1.20.1720.10 1 228 4.8E-34 T 13-10-2018 RAM_34505 80e5bd03fac80126df8de781ac1ceddd 433 Pfam PF07690 Major Facilitator Superfamily 3 387 2.9E-43 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_27005 e84052ae861df584fe58d06139bf7f67 196 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 3 157 45.643 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RAM_27005 e84052ae861df584fe58d06139bf7f67 196 Gene3D G3DSA:3.30.420.10 3 166 6.9E-49 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RAM_27005 e84052ae861df584fe58d06139bf7f67 196 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 5 154 8.3E-58 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RAM_27005 e84052ae861df584fe58d06139bf7f67 196 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 116 151 - T 13-10-2018 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 RAM_27005 e84052ae861df584fe58d06139bf7f67 196 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 5 155 3.1E-32 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RAM_27005 e84052ae861df584fe58d06139bf7f67 196 SUPERFAMILY SSF53098 4 158 4.17E-44 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily RAM_27005 e84052ae861df584fe58d06139bf7f67 196 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 64 80 7.4E-38 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RAM_27005 e84052ae861df584fe58d06139bf7f67 196 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 6 19 7.4E-38 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RAM_27005 e84052ae861df584fe58d06139bf7f67 196 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 110 129 7.4E-38 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RAM_27005 e84052ae861df584fe58d06139bf7f67 196 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 142 154 7.4E-38 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RAM_27005 e84052ae861df584fe58d06139bf7f67 196 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 86 102 7.4E-38 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RAM_18185 1fd7f8ca6d3c1a22e09a645088b85491 395 Gene3D G3DSA:1.10.630.10 7 395 9.3E-113 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_18185 1fd7f8ca6d3c1a22e09a645088b85491 395 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 336 345 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RAM_18185 1fd7f8ca6d3c1a22e09a645088b85491 395 Pfam PF00067 Cytochrome P450 267 363 1.5E-17 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_18185 1fd7f8ca6d3c1a22e09a645088b85491 395 PRINTS PR00359 B-class P450 signature 313 328 2.7E-45 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_18185 1fd7f8ca6d3c1a22e09a645088b85491 395 PRINTS PR00359 B-class P450 signature 88 99 2.7E-45 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_18185 1fd7f8ca6d3c1a22e09a645088b85491 395 PRINTS PR00359 B-class P450 signature 343 354 2.7E-45 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_18185 1fd7f8ca6d3c1a22e09a645088b85491 395 PRINTS PR00359 B-class P450 signature 135 151 2.7E-45 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_18185 1fd7f8ca6d3c1a22e09a645088b85491 395 PRINTS PR00359 B-class P450 signature 152 167 2.7E-45 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_18185 1fd7f8ca6d3c1a22e09a645088b85491 395 PRINTS PR00359 B-class P450 signature 267 278 2.7E-45 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_18185 1fd7f8ca6d3c1a22e09a645088b85491 395 PRINTS PR00359 B-class P450 signature 285 312 2.7E-45 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_18185 1fd7f8ca6d3c1a22e09a645088b85491 395 PRINTS PR00359 B-class P450 signature 334 343 2.7E-45 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_18185 1fd7f8ca6d3c1a22e09a645088b85491 395 SUPERFAMILY SSF48264 8 394 5.11E-85 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_18185 1fd7f8ca6d3c1a22e09a645088b85491 395 PRINTS PR00385 P450 superfamily signature 343 354 2.3E-8 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_18185 1fd7f8ca6d3c1a22e09a645088b85491 395 PRINTS PR00385 P450 superfamily signature 232 249 2.3E-8 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_18185 1fd7f8ca6d3c1a22e09a645088b85491 395 PRINTS PR00385 P450 superfamily signature 267 278 2.3E-8 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_18185 1fd7f8ca6d3c1a22e09a645088b85491 395 PRINTS PR00385 P450 superfamily signature 334 343 2.3E-8 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_44465 64fe56bc0254b67153780e30b30c8c69 322 Pfam PF05139 Erythromycin esterase 36 320 2.6E-32 T 13-10-2018 IPR007815 Erythromycin esterase GO:0046677 RAM_44465 64fe56bc0254b67153780e30b30c8c69 322 SUPERFAMILY SSF159501 8 321 1.02E-47 T 13-10-2018 RAM_13770 b79e5b2589870b0f9615e7ece64ee727 458 Pfam PF12002 MgsA AAA+ ATPase C terminal 286 451 7.7E-70 T 13-10-2018 IPR021886 MgsA AAA+ ATPase C-terminal RAM_13770 b79e5b2589870b0f9615e7ece64ee727 458 SUPERFAMILY SSF52540 34 254 3.71E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_13770 b79e5b2589870b0f9615e7ece64ee727 458 Gene3D G3DSA:1.10.3710.10 364 457 1.4E-23 T 13-10-2018 RAM_13770 b79e5b2589870b0f9615e7ece64ee727 458 Gene3D G3DSA:1.10.8.60 187 257 6.3E-15 T 13-10-2018 RAM_13770 b79e5b2589870b0f9615e7ece64ee727 458 SMART SM00382 70 187 6.6E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_13770 b79e5b2589870b0f9615e7ece64ee727 458 Pfam PF16193 AAA C-terminal domain 209 285 8.5E-29 T 13-10-2018 IPR032423 AAA C-terminal domain RAM_13770 b79e5b2589870b0f9615e7ece64ee727 458 Gene3D G3DSA:3.40.50.300 26 185 2.8E-39 T 13-10-2018 RAM_13770 b79e5b2589870b0f9615e7ece64ee727 458 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 74 178 9.0E-16 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RAM_13770 b79e5b2589870b0f9615e7ece64ee727 458 SUPERFAMILY SSF48019 271 454 4.65E-75 T 13-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 RAM_13770 b79e5b2589870b0f9615e7ece64ee727 458 Gene3D G3DSA:1.20.272.10 259 363 6.6E-48 T 13-10-2018 RAM_43675 f497c66d9135a040bd7bbabb4d4cc25e 264 Gene3D G3DSA:3.40.50.1000 85 180 6.2E-79 T 13-10-2018 IPR023214 HAD superfamily RAM_43675 f497c66d9135a040bd7bbabb4d4cc25e 264 PIRSF PIRSF000915 6 258 3.1E-56 T 13-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA RAM_43675 f497c66d9135a040bd7bbabb4d4cc25e 264 Gene3D G3DSA:3.40.50.1000 8 243 6.2E-79 T 13-10-2018 IPR023214 HAD superfamily RAM_43675 f497c66d9135a040bd7bbabb4d4cc25e 264 Pfam PF13344 Haloacid dehalogenase-like hydrolase 9 107 3.4E-26 T 13-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA RAM_43675 f497c66d9135a040bd7bbabb4d4cc25e 264 SUPERFAMILY SSF56784 8 254 1.4E-68 T 13-10-2018 IPR036412 HAD-like superfamily RAM_43675 f497c66d9135a040bd7bbabb4d4cc25e 264 Pfam PF13242 HAD-hyrolase-like 180 253 4.4E-24 T 13-10-2018 RAM_43675 f497c66d9135a040bd7bbabb4d4cc25e 264 TIGRFAM TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA 9 229 5.8E-46 T 13-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA RAM_34815 e924612c5be11b717a796daa4428956a 525 Gene3D G3DSA:3.60.40.10 314 525 2.2E-52 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_34815 e924612c5be11b717a796daa4428956a 525 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 332 522 1.8E-43 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_34815 e924612c5be11b717a796daa4428956a 525 Gene3D G3DSA:3.30.450.40 114 288 1.2E-5 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_34815 e924612c5be11b717a796daa4428956a 525 SMART SM00331 302 523 3.4E-40 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_34815 e924612c5be11b717a796daa4428956a 525 SUPERFAMILY SSF81606 317 521 1.18E-7 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_34815 e924612c5be11b717a796daa4428956a 525 Pfam PF13188 PAS domain 35 68 3.3E-4 T 13-10-2018 IPR000014 PAS domain RAM_35760 84273e3a919b3190f02613101f4d03ae 536 Pfam PF07969 Amidohydrolase family 44 532 2.5E-81 T 13-10-2018 IPR013108 Amidohydrolase 3 RAM_35760 84273e3a919b3190f02613101f4d03ae 536 Gene3D G3DSA:3.20.20.140 56 492 1.8E-113 T 13-10-2018 RAM_35760 84273e3a919b3190f02613101f4d03ae 536 Gene3D G3DSA:2.30.40.10 7 510 1.8E-113 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_35760 84273e3a919b3190f02613101f4d03ae 536 SUPERFAMILY SSF51338 3 535 1.02E-15 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_35760 84273e3a919b3190f02613101f4d03ae 536 SUPERFAMILY SSF51556 55 492 5.3E-30 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_35760 84273e3a919b3190f02613101f4d03ae 536 Gene3D G3DSA:3.10.310.70 74 193 1.8E-113 T 13-10-2018 RAM_23470 a1be6acdc1fa0737155be5eb3d276048 676 SUPERFAMILY SSF46785 537 660 1.4E-7 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_23470 a1be6acdc1fa0737155be5eb3d276048 676 Gene3D G3DSA:1.10.10.10 520 661 1.6E-7 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_23470 a1be6acdc1fa0737155be5eb3d276048 676 SUPERFAMILY SSF103473 12 505 1.05E-67 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_23470 a1be6acdc1fa0737155be5eb3d276048 676 Gene3D G3DSA:1.20.1720.10 28 258 6.7E-48 T 13-10-2018 RAM_23470 a1be6acdc1fa0737155be5eb3d276048 676 Pfam PF07690 Major Facilitator Superfamily 29 422 3.2E-46 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_23470 a1be6acdc1fa0737155be5eb3d276048 676 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 26 435 2.3E-77 T 13-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 RAM_42150 c8e525afe6bb35e74188fe7c7cf9ea4a 184 SUPERFAMILY SSF48498 73 175 1.63E-18 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_42150 c8e525afe6bb35e74188fe7c7cf9ea4a 184 Pfam PF00440 Bacterial regulatory proteins, tetR family 7 41 2.4E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_42150 c8e525afe6bb35e74188fe7c7cf9ea4a 184 Gene3D G3DSA:1.10.10.60 1 43 1.0E-15 T 13-10-2018 RAM_42150 c8e525afe6bb35e74188fe7c7cf9ea4a 184 SUPERFAMILY SSF46689 2 67 8.98E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_42150 c8e525afe6bb35e74188fe7c7cf9ea4a 184 Gene3D G3DSA:1.10.357.10 46 180 1.1E-26 T 13-10-2018 RAM_23485 a884063d68f0f3a884b17da6a0fb67ce 398 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 395 1.6E-138 T 13-10-2018 IPR002155 Thiolase GO:0016747 RAM_23485 a884063d68f0f3a884b17da6a0fb67ce 398 Gene3D G3DSA:3.40.47.10 125 391 3.0E-141 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_23485 a884063d68f0f3a884b17da6a0fb67ce 398 Pfam PF00108 Thiolase, N-terminal domain 5 266 1.7E-67 T 13-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 RAM_23485 a884063d68f0f3a884b17da6a0fb67ce 398 PIRSF PIRSF000429 1 398 2.5E-122 T 13-10-2018 IPR002155 Thiolase GO:0016747 RAM_23485 a884063d68f0f3a884b17da6a0fb67ce 398 Gene3D G3DSA:3.40.47.10 6 294 3.0E-141 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_23485 a884063d68f0f3a884b17da6a0fb67ce 398 SUPERFAMILY SSF53901 1 271 3.51E-76 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_23485 a884063d68f0f3a884b17da6a0fb67ce 398 ProSitePatterns PS00737 Thiolases signature 2. 343 359 - T 13-10-2018 IPR020613 Thiolase, conserved site GO:0016747 RAM_23485 a884063d68f0f3a884b17da6a0fb67ce 398 SUPERFAMILY SSF53901 275 396 6.32E-42 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_23485 a884063d68f0f3a884b17da6a0fb67ce 398 Pfam PF02803 Thiolase, C-terminal domain 274 396 3.4E-43 T 13-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 RAM_35255 143b11f921ec8a80820bf96f8c6b044c 657 Pfam PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella 146 223 8.4E-7 T 13-10-2018 RAM_35255 143b11f921ec8a80820bf96f8c6b044c 657 Pfam PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella 297 371 2.3E-7 T 13-10-2018 RAM_35255 143b11f921ec8a80820bf96f8c6b044c 657 Gene3D G3DSA:2.130.10.130 133 325 7.3E-8 T 13-10-2018 IPR028994 Integrin alpha, N-terminal Reactome: R-HSA-216083 RAM_35255 143b11f921ec8a80820bf96f8c6b044c 657 SUPERFAMILY SSF69318 71 542 2.75E-52 T 13-10-2018 RAM_35255 143b11f921ec8a80820bf96f8c6b044c 657 Pfam PF07593 ASPIC and UnbV 575 634 1.1E-7 T 13-10-2018 IPR011519 ASPIC/UnbV RAM_18295 845395ef477210c5e2f766a15325bc63 388 SUPERFAMILY SSF51735 144 318 3.33E-15 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_18295 845395ef477210c5e2f766a15325bc63 388 SUPERFAMILY SSF52283 8 179 2.21E-28 T 13-10-2018 RAM_18295 845395ef477210c5e2f766a15325bc63 388 Gene3D G3DSA:3.40.50.720 137 320 4.3E-50 T 13-10-2018 RAM_18295 845395ef477210c5e2f766a15325bc63 388 Gene3D G3DSA:3.40.50.720 10 365 4.3E-50 T 13-10-2018 RAM_18295 845395ef477210c5e2f766a15325bc63 388 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 12 126 3.1E-14 T 13-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal RAM_18295 845395ef477210c5e2f766a15325bc63 388 SMART SM01003 8 144 2.0E-20 T 13-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal RAM_18295 845395ef477210c5e2f766a15325bc63 388 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 237 365 2.6E-10 T 13-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain RAM_18295 845395ef477210c5e2f766a15325bc63 388 SMART SM01002 147 312 5.1E-17 T 13-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain RAM_30110 365198b2f9f56cf87e1feec363588128 311 SUPERFAMILY SSF53686 3 286 3.4E-74 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RAM_30110 365198b2f9f56cf87e1feec363588128 311 Gene3D G3DSA:3.40.50.1100 37 130 1.0E-88 T 13-10-2018 RAM_30110 365198b2f9f56cf87e1feec363588128 311 Gene3D G3DSA:3.40.50.1100 1 289 1.0E-88 T 13-10-2018 RAM_30110 365198b2f9f56cf87e1feec363588128 311 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 10 285 1.2E-68 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RAM_30110 365198b2f9f56cf87e1feec363588128 311 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 29 42 - T 13-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 RAM_05335 cf273aca52b0e2eec3bea422fd00c6d4 224 SMART SM00563 34 153 1.9E-26 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 RAM_05335 cf273aca52b0e2eec3bea422fd00c6d4 224 Pfam PF01553 Acyltransferase 21 150 2.3E-20 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 RAM_05335 cf273aca52b0e2eec3bea422fd00c6d4 224 SUPERFAMILY SSF69593 8 218 9.81E-44 T 13-10-2018 RAM_11590 016d9e0d93ecc5c16fda3db057d79061 128 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 8 85 1.2E-7 T 13-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RAM_11590 016d9e0d93ecc5c16fda3db057d79061 128 TIGRFAM TIGR03666 Rv2061_F420: PPOX class probable F420-dependent enzyme, Rv2061 family 2 127 8.3E-45 T 13-10-2018 IPR019965 PPOX class F420-dependent enzyme, family Rv2061, putative RAM_11590 016d9e0d93ecc5c16fda3db057d79061 128 Gene3D G3DSA:2.30.110.10 3 127 3.1E-19 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_11590 016d9e0d93ecc5c16fda3db057d79061 128 SUPERFAMILY SSF50475 6 120 1.12E-16 T 13-10-2018 RAM_36685 224f2f96459018e68ac4117320de72d4 396 Gene3D G3DSA:3.50.50.60 121 245 2.8E-93 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_36685 224f2f96459018e68ac4117320de72d4 396 Pfam PF14759 Reductase C-terminal 326 389 3.3E-9 T 13-10-2018 IPR028202 Reductase, C-terminal RAM_36685 224f2f96459018e68ac4117320de72d4 396 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 11 33 5.5E-17 T 13-10-2018 RAM_36685 224f2f96459018e68ac4117320de72d4 396 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 239 253 5.5E-17 T 13-10-2018 RAM_36685 224f2f96459018e68ac4117320de72d4 396 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 277 284 5.5E-17 T 13-10-2018 RAM_36685 224f2f96459018e68ac4117320de72d4 396 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 152 177 5.5E-17 T 13-10-2018 RAM_36685 224f2f96459018e68ac4117320de72d4 396 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 238 254 9.3E-18 T 13-10-2018 RAM_36685 224f2f96459018e68ac4117320de72d4 396 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 152 170 9.3E-18 T 13-10-2018 RAM_36685 224f2f96459018e68ac4117320de72d4 396 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 12 31 9.3E-18 T 13-10-2018 RAM_36685 224f2f96459018e68ac4117320de72d4 396 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 108 126 9.3E-18 T 13-10-2018 RAM_36685 224f2f96459018e68ac4117320de72d4 396 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 262 284 9.3E-18 T 13-10-2018 RAM_36685 224f2f96459018e68ac4117320de72d4 396 Gene3D G3DSA:3.30.390.30 326 395 2.8E-10 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RAM_36685 224f2f96459018e68ac4117320de72d4 396 SUPERFAMILY SSF51905 12 196 5.38E-33 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_36685 224f2f96459018e68ac4117320de72d4 396 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 11 307 4.2E-43 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAM_36685 224f2f96459018e68ac4117320de72d4 396 SUPERFAMILY SSF55424 318 394 4.94E-19 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RAM_36685 224f2f96459018e68ac4117320de72d4 396 Gene3D G3DSA:3.50.50.60 12 307 2.8E-93 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_36685 224f2f96459018e68ac4117320de72d4 396 SUPERFAMILY SSF51905 151 316 9.39E-22 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_26245 ef04cebc562875cc0dd90dab4ec35e9e 384 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 262 354 2.4E-11 T 13-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 RAM_26245 ef04cebc562875cc0dd90dab4ec35e9e 384 Gene3D G3DSA:3.20.20.10 26 263 2.3E-82 T 13-10-2018 IPR029066 PLP-binding barrel RAM_26245 ef04cebc562875cc0dd90dab4ec35e9e 384 SUPERFAMILY SSF51419 18 263 2.8E-55 T 13-10-2018 IPR029066 PLP-binding barrel RAM_26245 ef04cebc562875cc0dd90dab4ec35e9e 384 SUPERFAMILY SSF50621 236 376 2.93E-30 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 RAM_26245 ef04cebc562875cc0dd90dab4ec35e9e 384 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 29 261 5.3E-45 T 13-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 RAM_26245 ef04cebc562875cc0dd90dab4ec35e9e 384 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 47 65 - T 13-10-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site RAM_26245 ef04cebc562875cc0dd90dab4ec35e9e 384 Gene3D G3DSA:2.40.37.10 19 368 2.3E-82 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 RAM_26245 ef04cebc562875cc0dd90dab4ec35e9e 384 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 47 65 3.2E-15 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RAM_26245 ef04cebc562875cc0dd90dab4ec35e9e 384 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 67 79 3.2E-15 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RAM_26245 ef04cebc562875cc0dd90dab4ec35e9e 384 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 168 181 3.2E-15 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RAM_26245 ef04cebc562875cc0dd90dab4ec35e9e 384 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 251 270 3.2E-15 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RAM_26245 ef04cebc562875cc0dd90dab4ec35e9e 384 PRINTS PR01182 Ornithine decarboxylase signature 119 141 6.8E-15 T 13-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 RAM_26245 ef04cebc562875cc0dd90dab4ec35e9e 384 PRINTS PR01182 Ornithine decarboxylase signature 318 328 6.8E-15 T 13-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 RAM_26245 ef04cebc562875cc0dd90dab4ec35e9e 384 PRINTS PR01182 Ornithine decarboxylase signature 89 113 6.8E-15 T 13-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 RAM_26245 ef04cebc562875cc0dd90dab4ec35e9e 384 PRINTS PR01182 Ornithine decarboxylase signature 45 72 6.8E-15 T 13-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 RAM_02640 d465a12835ace7ff7eb7b91b98a9357b 367 Gene3D G3DSA:3.40.50.2000 2 189 5.5E-19 T 13-10-2018 RAM_02640 d465a12835ace7ff7eb7b91b98a9357b 367 Pfam PF00534 Glycosyl transferases group 1 200 349 1.7E-26 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 RAM_02640 d465a12835ace7ff7eb7b91b98a9357b 367 SUPERFAMILY SSF53756 4 363 5.14E-61 T 13-10-2018 RAM_02640 d465a12835ace7ff7eb7b91b98a9357b 367 Gene3D G3DSA:3.40.50.2000 190 351 2.6E-36 T 13-10-2018 RAM_02640 d465a12835ace7ff7eb7b91b98a9357b 367 Pfam PF13579 Glycosyl transferase 4-like domain 15 175 2.4E-15 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 RAM_17840 c82fda58bb23aab2b8751f8b24d57b0d 68 SUPERFAMILY SSF55008 1 66 2.09E-17 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 RAM_17840 c82fda58bb23aab2b8751f8b24d57b0d 68 PRINTS PR00944 Copper ion binding protein signature 3 15 2.0E-5 T 13-10-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 RAM_17840 c82fda58bb23aab2b8751f8b24d57b0d 68 PRINTS PR00944 Copper ion binding protein signature 15 28 2.0E-5 T 13-10-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 RAM_17840 c82fda58bb23aab2b8751f8b24d57b0d 68 PRINTS PR00944 Copper ion binding protein signature 28 41 2.0E-5 T 13-10-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 RAM_17840 c82fda58bb23aab2b8751f8b24d57b0d 68 PRINTS PR00944 Copper ion binding protein signature 53 66 2.0E-5 T 13-10-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 RAM_17840 c82fda58bb23aab2b8751f8b24d57b0d 68 Pfam PF00403 Heavy-metal-associated domain 6 65 1.8E-13 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 RAM_17840 c82fda58bb23aab2b8751f8b24d57b0d 68 Gene3D G3DSA:3.30.70.100 5 65 6.5E-20 T 13-10-2018 RAM_17840 c82fda58bb23aab2b8751f8b24d57b0d 68 ProSitePatterns PS01047 Heavy-metal-associated domain. 8 37 - T 13-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 RAM_03385 67fa394ca152ac693b44541a58dac10a 240 Gene3D G3DSA:2.60.120.10 28 155 3.3E-24 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_03385 67fa394ca152ac693b44541a58dac10a 240 SUPERFAMILY SSF51206 29 153 2.09E-20 T 13-10-2018 IPR018490 Cyclic nucleotide-binding-like RAM_03385 67fa394ca152ac693b44541a58dac10a 240 Pfam PF13545 Crp-like helix-turn-helix domain 163 235 4.5E-10 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RAM_03385 67fa394ca152ac693b44541a58dac10a 240 Gene3D G3DSA:1.10.10.10 159 237 7.3E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_03385 67fa394ca152ac693b44541a58dac10a 240 Pfam PF00027 Cyclic nucleotide-binding domain 38 129 5.7E-15 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain RAM_03385 67fa394ca152ac693b44541a58dac10a 240 SMART SM00100 18 145 3.6E-10 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain RAM_03385 67fa394ca152ac693b44541a58dac10a 240 SUPERFAMILY SSF46785 162 237 5.72E-13 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_32115 d3ca5b9e608dd54ddf4bc5b8943a0fb6 143 Pfam PF02381 MraZ protein, putative antitoxin-like 2 70 2.0E-20 T 13-10-2018 IPR020603 MraZ domain RAM_32115 d3ca5b9e608dd54ddf4bc5b8943a0fb6 143 Pfam PF02381 MraZ protein, putative antitoxin-like 72 137 1.6E-20 T 13-10-2018 IPR020603 MraZ domain RAM_32115 d3ca5b9e608dd54ddf4bc5b8943a0fb6 143 Gene3D G3DSA:2.40.330.20 1 139 3.7E-45 T 13-10-2018 IPR038619 MraZ superfamily RAM_32115 d3ca5b9e608dd54ddf4bc5b8943a0fb6 143 ProDom PD006745 MRAZ YABB DIVISION CELL 3D-STRUCTURE UNCHARACTERIZED BCR SIMILAR PROTEIN 1 128 9.0E-49 T 13-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 RAM_32115 d3ca5b9e608dd54ddf4bc5b8943a0fb6 143 SUPERFAMILY SSF89447 2 134 1.35E-45 T 13-10-2018 IPR037914 SpoVT-AbrB domain superfamily RAM_32115 d3ca5b9e608dd54ddf4bc5b8943a0fb6 143 Hamap MF_01008 Transcriptional regulator MraZ [mraZ]. 1 143 52.27 T 13-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 RAM_32115 d3ca5b9e608dd54ddf4bc5b8943a0fb6 143 TIGRFAM TIGR00242 TIGR00242: division/cell wall cluster transcriptional repressor MraZ 2 136 7.7E-38 T 13-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 RAM_09935 cb63323da4eacd4c6f66d7f34e3471b4 79 SUPERFAMILY SSF54814 18 63 4.05E-8 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 RAM_09935 cb63323da4eacd4c6f66d7f34e3471b4 79 Hamap MF_00088 UPF0109 protein . 4 75 20.513 T 13-10-2018 IPR020627 Uncharacterised protein family UPF0109 RAM_09935 cb63323da4eacd4c6f66d7f34e3471b4 79 Gene3D G3DSA:3.30.300.20 6 75 1.6E-5 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta RAM_09935 cb63323da4eacd4c6f66d7f34e3471b4 79 Pfam PF13083 KH domain 6 66 1.2E-18 T 13-10-2018 RAM_15645 b037612ff56c6ee9ecf155d5b576a7d4 199 SUPERFAMILY SSF48498 87 188 2.48E-12 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_15645 b037612ff56c6ee9ecf155d5b576a7d4 199 Pfam PF00440 Bacterial regulatory proteins, tetR family 24 66 1.0E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_15645 b037612ff56c6ee9ecf155d5b576a7d4 199 SUPERFAMILY SSF46689 7 84 4.56E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_15645 b037612ff56c6ee9ecf155d5b576a7d4 199 Gene3D G3DSA:1.10.357.10 3 193 9.2E-52 T 13-10-2018 RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SUPERFAMILY SSF53901 28 401 2.56E-102 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SUPERFAMILY SSF52151 2226 2517 3.66E-68 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SMART SM00823 Phosphopantetheine attachment site 1611 1683 4.3E-32 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SMART SM00823 Phosphopantetheine attachment site 3337 3409 1.5E-29 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SMART SM00825 Beta-ketoacyl synthase 1704 2128 1.3E-212 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SMART SM00825 Beta-ketoacyl synthase 33 455 1.5E-213 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 1338 1513 1.8E-52 T 13-10-2018 RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3054 3230 3.0E-48 T 13-10-2018 RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 556 852 8.5E-117 T 13-10-2018 IPR020801 Polyketide synthase, acyl transferase domain RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 2230 2521 3.0E-116 T 13-10-2018 IPR020801 Polyketide synthase, acyl transferase domain RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SUPERFAMILY SSF51735 1335 1548 4.57E-40 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 ProSitePatterns PS00012 Phosphopantetheine attachment site. 3364 3379 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Gene3D G3DSA:3.40.50.720 2876 3312 6.2E-115 T 13-10-2018 RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SUPERFAMILY SSF47336 3330 3410 1.24E-19 T 13-10-2018 IPR036736 ACP-like superfamily RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Gene3D G3DSA:3.30.70.3290 2143 2566 5.0E-150 T 13-10-2018 RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1638 1653 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 31 279 5.0E-85 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 1702 1950 9.5E-87 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 1958 2075 2.0E-44 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 287 402 2.1E-44 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Gene3D G3DSA:3.40.366.10 554 855 4.8E-151 T 13-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Gene3D G3DSA:3.40.366.10 2228 2524 5.0E-150 T 13-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Gene3D G3DSA:3.40.50.720 1199 1577 1.7E-106 T 13-10-2018 RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Gene3D G3DSA:1.10.1200.10 1591 1684 1.5E-35 T 13-10-2018 IPR036736 ACP-like superfamily RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SUPERFAMILY SSF55048 686 747 6.8E-12 T 13-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SUPERFAMILY SSF47336 1605 1717 7.2E-25 T 13-10-2018 IPR036736 ACP-like superfamily RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SUPERFAMILY SSF51735 1200 1328 1.1E-21 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Pfam PF14765 Polyketide synthase dehydratase 2585 2867 1.9E-59 T 13-10-2018 IPR020807 Polyketide synthase, dehydratase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Pfam PF14765 Polyketide synthase dehydratase 918 1194 5.5E-60 T 13-10-2018 IPR020807 Polyketide synthase, dehydratase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Pfam PF08659 KR domain 3055 3228 7.5E-50 T 13-10-2018 IPR013968 Polyketide synthase, ketoreductase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Pfam PF08659 KR domain 1338 1511 2.4E-52 T 13-10-2018 IPR013968 Polyketide synthase, ketoreductase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SMART SM00826 918 1081 6.5E-84 T 13-10-2018 IPR020807 Polyketide synthase, dehydratase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SMART SM00826 2585 2748 2.7E-80 T 13-10-2018 IPR020807 Polyketide synthase, dehydratase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SUPERFAMILY SSF51735 3054 3270 3.36E-40 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SUPERFAMILY SSF55048 2351 2413 1.05E-11 T 13-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 192 208 - T 13-10-2018 IPR018201 Beta-ketoacyl synthase, active site RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Gene3D G3DSA:3.10.129.110 2574 2872 4.8E-131 T 13-10-2018 RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Gene3D G3DSA:3.10.129.110 907 1198 2.2E-117 T 13-10-2018 RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SUPERFAMILY SSF51735 2877 3043 1.46E-27 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SUPERFAMILY SSF52151 552 840 7.85E-72 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Gene3D G3DSA:3.40.47.10 22 468 3.5E-184 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Gene3D G3DSA:3.40.47.10 1693 2136 1.4E-184 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 1863 1879 - T 13-10-2018 IPR018201 Beta-ketoacyl synthase, active site RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Pfam PF00550 Phosphopantetheine attachment site 1613 1679 2.1E-11 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Pfam PF00550 Phosphopantetheine attachment site 3339 3405 2.0E-13 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Gene3D G3DSA:1.10.1200.10 3320 3412 9.9E-31 T 13-10-2018 IPR036736 ACP-like superfamily RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Gene3D G3DSA:3.30.70.3290 470 899 4.8E-151 T 13-10-2018 RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SUPERFAMILY SSF53901 1699 2074 1.74E-101 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Pfam PF00698 Acyl transferase domain 554 843 3.7E-58 T 13-10-2018 IPR014043 Acyl transferase RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Pfam PF00698 Acyl transferase domain 2228 2540 4.2E-82 T 13-10-2018 IPR014043 Acyl transferase RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 405 491 1.7E-12 T 13-10-2018 IPR032821 Ketoacyl-synthetase, C-terminal extension Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 2078 2171 5.8E-13 T 13-10-2018 IPR032821 Ketoacyl-synthetase, C-terminal extension Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Pfam PF08990 Erythronolide synthase docking 2 24 1.2E-6 T 13-10-2018 IPR015083 Polyketide synthase, docking domain GO:0016740|GO:0048037 RAM_03175 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SMART SM01294 1612 1679 4.8E-6 T 13-10-2018 RAM_25565 0e07a801537d33e1254a84c4c9b917d5 320 Gene3D G3DSA:3.40.190.10 28 300 4.6E-89 T 13-10-2018 RAM_25565 0e07a801537d33e1254a84c4c9b917d5 320 SMART SM00062 27 253 0.0036 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RAM_25565 0e07a801537d33e1254a84c4c9b917d5 320 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 29 309 1.8E-57 T 13-10-2018 IPR010067 Aliphatic sulfonates-binding protein GO:0016020|GO:0042626 RAM_25565 0e07a801537d33e1254a84c4c9b917d5 320 Gene3D G3DSA:1.10.8.450 236 269 4.6E-89 T 13-10-2018 RAM_25565 0e07a801537d33e1254a84c4c9b917d5 320 Pfam PF13379 NMT1-like family 53 248 9.4E-8 T 13-10-2018 RAM_25565 0e07a801537d33e1254a84c4c9b917d5 320 Gene3D G3DSA:3.40.190.10 103 202 4.6E-89 T 13-10-2018 RAM_25565 0e07a801537d33e1254a84c4c9b917d5 320 SUPERFAMILY SSF53850 25 247 2.37E-40 T 13-10-2018 RAM_39415 00385f5e3074e5272c3053b6ba84cb56 366 Gene3D G3DSA:3.60.21.10 139 336 1.5E-20 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like RAM_39415 00385f5e3074e5272c3053b6ba84cb56 366 Pfam PF00149 Calcineurin-like phosphoesterase 140 308 1.0E-8 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 RAM_39415 00385f5e3074e5272c3053b6ba84cb56 366 SUPERFAMILY SSF56300 140 364 1.24E-35 T 13-10-2018 RAM_39870 90085eb6f62674a4c383c17edfb9b8d9 658 TIGRFAM TIGR00640 acid_CoA_mut_C: methylmalonyl-CoA mutase C-terminal domain 525 652 2.4E-38 T 13-10-2018 IPR006159 Methylmalonyl-CoA mutase, C-terminal GO:0016853 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 RAM_39870 90085eb6f62674a4c383c17edfb9b8d9 658 Gene3D G3DSA:3.20.20.240 1 503 6.5E-163 T 13-10-2018 RAM_39870 90085eb6f62674a4c383c17edfb9b8d9 658 SUPERFAMILY SSF51703 1 489 4.97E-153 T 13-10-2018 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 RAM_39870 90085eb6f62674a4c383c17edfb9b8d9 658 Pfam PF01642 Methylmalonyl-CoA mutase 1 487 2.6E-127 T 13-10-2018 IPR006099 Methylmalonyl-CoA mutase, alpha/beta chain, catalytic GO:0016866|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 RAM_39870 90085eb6f62674a4c383c17edfb9b8d9 658 Pfam PF02310 B12 binding domain 527 630 1.7E-16 T 13-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 RAM_39870 90085eb6f62674a4c383c17edfb9b8d9 658 TIGRFAM TIGR00641 acid_CoA_mut_N: methylmalonyl-CoA mutase N-terminal domain 1 493 1.2E-133 T 13-10-2018 IPR006098 Methylmalonyl-CoA mutase, alpha chain, catalytic GO:0004494|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 RAM_39870 90085eb6f62674a4c383c17edfb9b8d9 658 Gene3D G3DSA:3.40.50.280 508 657 2.7E-46 T 13-10-2018 RAM_39870 90085eb6f62674a4c383c17edfb9b8d9 658 SUPERFAMILY SSF52242 503 652 7.2E-48 T 13-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 RAM_07950 5b74215551800ea51dffdeae76d062ac 118 Pfam PF06243 Phenylacetic acid degradation B 28 114 7.7E-39 T 13-10-2018 IPR009359 Phenylacetic acid degradation B RAM_07950 5b74215551800ea51dffdeae76d062ac 118 PIRSF PIRSF030200 19 118 3.7E-44 T 13-10-2018 IPR009359 Phenylacetic acid degradation B RAM_07950 5b74215551800ea51dffdeae76d062ac 118 TIGRFAM TIGR02157 PA_CoA_Oxy2: phenylacetate-CoA oxygenase, PaaH subunit 29 118 6.1E-47 T 13-10-2018 IPR009359 Phenylacetic acid degradation B RAM_07950 5b74215551800ea51dffdeae76d062ac 118 Gene3D G3DSA:3.10.20.520 23 88 2.1E-31 T 13-10-2018 IPR038693 Phenylacetyl-CoA epoxidase, subunit B RAM_30170 854637162e8be36004cd08a9c1496b33 273 Gene3D G3DSA:1.10.260.40 2 84 8.3E-8 T 13-10-2018 RAM_30170 854637162e8be36004cd08a9c1496b33 273 Pfam PF13560 Helix-turn-helix domain 7 85 1.1E-16 T 13-10-2018 RAM_30170 854637162e8be36004cd08a9c1496b33 273 SMART SM00530 10 82 2.0E-6 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_30170 854637162e8be36004cd08a9c1496b33 273 Gene3D G3DSA:3.30.450.180 107 266 5.7E-11 T 13-10-2018 RAM_30170 854637162e8be36004cd08a9c1496b33 273 SUPERFAMILY SSF47413 31 80 5.91E-8 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_19000 3e194f808fa284b684b9f607da4fb968 161 SUPERFAMILY SSF53597 10 134 3.71E-11 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RAM_19000 3e194f808fa284b684b9f607da4fb968 161 Pfam PF01872 RibD C-terminal domain 7 125 5.6E-13 T 13-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 RAM_19000 3e194f808fa284b684b9f607da4fb968 161 Gene3D G3DSA:3.40.430.10 2 153 1.2E-19 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RAM_43995 953e4b0ca0464ee4fbad891728a64f18 536 TIGRFAM TIGR00190 thiC: phosphomethylpyrimidine synthase 74 497 4.3E-210 T 13-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 RAM_43995 953e4b0ca0464ee4fbad891728a64f18 536 Pfam PF13667 ThiC-associated domain 8 71 7.1E-17 T 13-10-2018 IPR025747 ThiC-associated domain KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 RAM_43995 953e4b0ca0464ee4fbad891728a64f18 536 Pfam PF01964 Radical SAM ThiC family 74 494 3.5E-201 T 13-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 RAM_43995 953e4b0ca0464ee4fbad891728a64f18 536 Hamap MF_00089 Phosphomethylpyrimidine synthase [thiC]. 73 499 96.681 T 13-10-2018 IPR037509 Phosphomethylpyrimidine synthase GO:0009228|GO:0016830 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 RAM_43995 953e4b0ca0464ee4fbad891728a64f18 536 Gene3D G3DSA:3.20.20.540 116 430 2.7E-150 T 13-10-2018 IPR038521 ThiC/Bza superfamily KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 RAM_14460 07dfce025ce5e0a5486c9313d7579baf 310 SUPERFAMILY SSF52402 12 218 4.19E-68 T 13-10-2018 RAM_14460 07dfce025ce5e0a5486c9313d7579baf 310 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 38 263 5.3E-49 T 13-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 RAM_14460 07dfce025ce5e0a5486c9313d7579baf 310 TIGRFAM TIGR02039 CysD: sulfate adenylyltransferase, small subunit 17 310 5.6E-138 T 13-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 RAM_14460 07dfce025ce5e0a5486c9313d7579baf 310 PIRSF PIRSF002936 8 310 3.2E-138 T 13-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 RAM_14460 07dfce025ce5e0a5486c9313d7579baf 310 Gene3D G3DSA:3.40.50.620 15 220 2.5E-58 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF52777 1637 1776 4.89E-31 T 13-10-2018 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:1.10.1200.10 4430 4512 1.1E-26 T 13-10-2018 IPR036736 ACP-like superfamily RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:1.10.1200.10 2989 3070 1.7E-26 T 13-10-2018 IPR036736 ACP-like superfamily RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:1.10.1200.10 5881 5964 6.1E-23 T 13-10-2018 IPR036736 ACP-like superfamily RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:1.10.1200.10 1540 1621 5.3E-25 T 13-10-2018 IPR036736 ACP-like superfamily RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF56801 5356 5906 1.44E-157 T 13-10-2018 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:3.30.559.30 2226 2467 2.3E-115 T 13-10-2018 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF47336 2994 3063 2.49E-19 T 13-10-2018 IPR036736 ACP-like superfamily RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:3.30.559.10 3071 3154 5.0E-16 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:3.30.559.10 1622 1766 1.8E-32 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:3.30.559.10 4513 4595 5.0E-18 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF47336 5885 5959 7.98E-17 T 13-10-2018 IPR036736 ACP-like superfamily RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF00550 Phosphopantetheine attachment site 1556 1616 5.5E-12 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF00550 Phosphopantetheine attachment site 515 578 5.5E-17 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF00550 Phosphopantetheine attachment site 5895 5958 7.4E-12 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF00550 Phosphopantetheine attachment site 4446 4505 1.1E-14 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF00550 Phosphopantetheine attachment site 3004 3063 1.1E-12 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:3.30.559.10 599 956 7.7E-144 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF56801 2450 3015 3.27E-136 T 13-10-2018 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 TIGRFAM TIGR01720 NRPS-para261: non-ribosomal peptide synthase domain TIGR01720 1900 2045 5.6E-37 T 13-10-2018 IPR010060 Non-ribosomal peptide synthase RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 TIGRFAM TIGR01720 NRPS-para261: non-ribosomal peptide synthase domain TIGR01720 4793 4930 2.0E-32 T 13-10-2018 IPR010060 Non-ribosomal peptide synthase RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 TIGRFAM TIGR01720 NRPS-para261: non-ribosomal peptide synthase domain TIGR01720 3346 3482 1.3E-36 T 13-10-2018 IPR010060 Non-ribosomal peptide synthase RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF52777 3670 3929 2.78E-57 T 13-10-2018 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1578 1593 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:3.30.559.10 4943 5309 1.6E-135 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF52777 3230 3458 3.22E-38 T 13-10-2018 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:3.30.559.30 3669 3918 1.2E-132 T 13-10-2018 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:3.30.559.30 5119 5374 1.6E-135 T 13-10-2018 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF00668 Condensation domain 1632 2025 5.0E-59 T 13-10-2018 IPR001242 Condensation domain RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF00668 Condensation domain 4523 4582 2.3E-8 T 13-10-2018 IPR001242 Condensation domain RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF00668 Condensation domain 3489 3920 1.6E-80 T 13-10-2018 IPR001242 Condensation domain RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF00668 Condensation domain 3154 3468 1.6E-44 T 13-10-2018 IPR001242 Condensation domain RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF00668 Condensation domain 597 1024 2.2E-94 T 13-10-2018 IPR001242 Condensation domain RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF00668 Condensation domain 4598 4918 3.1E-48 T 13-10-2018 IPR001242 Condensation domain RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF00668 Condensation domain 3083 3142 2.5E-5 T 13-10-2018 IPR001242 Condensation domain RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF00668 Condensation domain 4938 5376 1.4E-79 T 13-10-2018 IPR001242 Condensation domain RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF00668 Condensation domain 2052 2470 1.3E-69 T 13-10-2018 IPR001242 Condensation domain RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF00501 AMP-binding enzyme 23 407 8.8E-88 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF00501 AMP-binding enzyme 3941 4345 3.3E-85 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF00501 AMP-binding enzyme 1044 1452 5.8E-81 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF00501 AMP-binding enzyme 5398 5779 4.5E-95 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF00501 AMP-binding enzyme 2490 2900 1.4E-83 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF52777 4671 4906 2.0E-43 T 13-10-2018 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 ProSitePatterns PS00455 Putative AMP-binding domain signature. 2626 2637 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF52777 4518 4683 5.19E-30 T 13-10-2018 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF52777 2051 2240 2.11E-41 T 13-10-2018 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 ProSitePatterns PS00012 Phosphopantetheine attachment site. 4468 4483 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 SMART SM01294 514 578 0.0025 T 13-10-2018 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 3958 4306 2.2E-102 T 13-10-2018 IPR010071 Amino acid adenylation domain RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 5418 5803 5.5E-131 T 13-10-2018 IPR010071 Amino acid adenylation domain RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1065 1414 2.7E-100 T 13-10-2018 IPR010071 Amino acid adenylation domain RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 2510 2924 1.1E-114 T 13-10-2018 IPR010071 Amino acid adenylation domain RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 43 431 7.7E-125 T 13-10-2018 IPR010071 Amino acid adenylation domain RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:3.40.50.12780 10 401 9.5E-131 T 13-10-2018 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:3.40.50.12780 2476 2867 3.8E-129 T 13-10-2018 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:3.40.50.12780 3927 4311 3.7E-128 T 13-10-2018 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:3.40.50.12780 5385 5773 7.7E-143 T 13-10-2018 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:3.40.50.12780 1035 1417 2.9E-122 T 13-10-2018 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF47336 4436 4505 8.24E-20 T 13-10-2018 IPR036736 ACP-like superfamily RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:3.30.559.30 767 1010 7.7E-144 T 13-10-2018 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF13193 AMP-binding enzyme C-terminal domain 1460 1529 6.1E-14 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF13193 AMP-binding enzyme C-terminal domain 415 486 6.2E-11 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF13193 AMP-binding enzyme C-terminal domain 5790 5867 2.4E-8 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF13193 AMP-binding enzyme C-terminal domain 4353 4419 3.1E-15 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF13193 AMP-binding enzyme C-terminal domain 2908 2977 3.1E-10 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:3.30.559.30 1767 2022 3.2E-74 T 13-10-2018 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:3.30.559.30 4655 4907 1.5E-80 T 13-10-2018 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:3.30.559.30 3212 3461 1.4E-79 T 13-10-2018 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF52777 5121 5384 1.56E-60 T 13-10-2018 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 SMART SM00823 Phosphopantetheine attachment site 513 582 2.5E-10 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 SMART SM00823 Phosphopantetheine attachment site 1554 1622 5.7E-5 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 SMART SM00823 Phosphopantetheine attachment site 5893 5962 0.0057 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 SMART SM00823 Phosphopantetheine attachment site 3002 3070 8.5E-6 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 SMART SM00823 Phosphopantetheine attachment site 4444 4512 1.2E-5 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 ProSitePatterns PS00455 Putative AMP-binding domain signature. 4070 4081 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF47336 506 578 2.62E-20 T 13-10-2018 IPR036736 ACP-like superfamily RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF52777 3488 3683 1.78E-43 T 13-10-2018 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 ProSitePatterns PS00012 Phosphopantetheine attachment site. 3026 3041 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:3.30.559.10 3495 3853 1.2E-132 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:3.30.559.10 2058 2401 2.3E-115 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF52777 771 1013 1.22E-53 T 13-10-2018 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF56801 3902 4457 3.53E-142 T 13-10-2018 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 ProSitePatterns PS00455 Putative AMP-binding domain signature. 5532 5543 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF56801 1004 1567 1.96E-145 T 13-10-2018 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF56801 16 526 3.01E-146 T 13-10-2018 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1181 1192 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF52777 600 763 6.67E-48 T 13-10-2018 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF52777 2225 2458 1.67E-49 T 13-10-2018 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF52777 4937 5133 2.3E-41 T 13-10-2018 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:3.30.300.30 2894 2988 7.0E-33 T 13-10-2018 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:3.30.300.30 1446 1539 9.3E-36 T 13-10-2018 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:3.30.300.30 402 501 8.7E-35 T 13-10-2018 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:3.30.300.30 5774 5880 1.9E-30 T 13-10-2018 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:3.30.300.30 4339 4429 9.1E-35 T 13-10-2018 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 ProSitePatterns PS00012 Phosphopantetheine attachment site. 537 552 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF47336 1547 1616 3.66E-18 T 13-10-2018 IPR036736 ACP-like superfamily RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:1.10.1200.10 502 584 1.7E-27 T 13-10-2018 IPR036736 ACP-like superfamily RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF52777 3078 3216 9.64E-26 T 13-10-2018 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF52777 1778 2021 1.56E-39 T 13-10-2018 RAM_15775 7292045a93a65e3d17beda57da7072e4 5975 ProSitePatterns PS00455 Putative AMP-binding domain signature. 160 171 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_35380 09b5e1bc14e3875cca519f8d6e19c9dc 93 Pfam PF02583 Metal-sensitive transcriptional repressor 7 88 3.3E-30 T 13-10-2018 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 RAM_35380 09b5e1bc14e3875cca519f8d6e19c9dc 93 Gene3D G3DSA:1.20.58.1000 4 93 1.2E-34 T 13-10-2018 IPR038390 Metal-sensitive transcriptional repressor superfamily RAM_35485 632fcf43b2578a89204f116bb0675fed 335 SUPERFAMILY SSF53822 59 331 3.53E-68 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_35485 632fcf43b2578a89204f116bb0675fed 335 Gene3D G3DSA:1.10.260.40 1 57 5.1E-14 T 13-10-2018 RAM_35485 632fcf43b2578a89204f116bb0675fed 335 ProSitePatterns PS00356 LacI-type HTH domain signature. 5 23 - T 13-10-2018 RAM_35485 632fcf43b2578a89204f116bb0675fed 335 Gene3D G3DSA:3.40.50.2300 60 322 4.9E-71 T 13-10-2018 RAM_35485 632fcf43b2578a89204f116bb0675fed 335 Gene3D G3DSA:3.40.50.2300 163 327 4.9E-71 T 13-10-2018 RAM_35485 632fcf43b2578a89204f116bb0675fed 335 Pfam PF00356 Bacterial regulatory proteins, lacI family 5 47 1.2E-12 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_35485 632fcf43b2578a89204f116bb0675fed 335 Pfam PF13377 Periplasmic binding protein-like domain 171 330 2.3E-40 T 13-10-2018 RAM_35485 632fcf43b2578a89204f116bb0675fed 335 SMART SM00354 2 69 2.7E-17 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_35485 632fcf43b2578a89204f116bb0675fed 335 SUPERFAMILY SSF47413 4 49 3.99E-11 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_28250 976e9a1f0721ff877e62185f2b076935 596 SMART SM00382 369 567 1.2E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_28250 976e9a1f0721ff877e62185f2b076935 596 Gene3D G3DSA:3.40.50.300 336 595 1.2E-68 T 13-10-2018 RAM_28250 976e9a1f0721ff877e62185f2b076935 596 ProSitePatterns PS00211 ABC transporters family signature. 486 500 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_28250 976e9a1f0721ff877e62185f2b076935 596 SUPERFAMILY SSF90123 11 319 4.32E-22 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RAM_28250 976e9a1f0721ff877e62185f2b076935 596 Pfam PF00005 ABC transporter 360 515 3.1E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_28250 976e9a1f0721ff877e62185f2b076935 596 SUPERFAMILY SSF52540 336 591 1.07E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_28250 976e9a1f0721ff877e62185f2b076935 596 Gene3D G3DSA:1.20.1560.10 5 325 3.5E-15 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RAM_41045 aa8107f59493163cd4912321bbca6b2d 964 PRINTS PR00906 SecA protein signature 375 392 5.6E-71 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RAM_41045 aa8107f59493163cd4912321bbca6b2d 964 PRINTS PR00906 SecA protein signature 167 187 5.6E-71 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RAM_41045 aa8107f59493163cd4912321bbca6b2d 964 PRINTS PR00906 SecA protein signature 338 360 5.6E-71 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RAM_41045 aa8107f59493163cd4912321bbca6b2d 964 PRINTS PR00906 SecA protein signature 114 124 5.6E-71 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RAM_41045 aa8107f59493163cd4912321bbca6b2d 964 PRINTS PR00906 SecA protein signature 412 425 5.6E-71 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RAM_41045 aa8107f59493163cd4912321bbca6b2d 964 PRINTS PR00906 SecA protein signature 60 84 5.6E-71 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RAM_41045 aa8107f59493163cd4912321bbca6b2d 964 PRINTS PR00906 SecA protein signature 98 112 5.6E-71 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RAM_41045 aa8107f59493163cd4912321bbca6b2d 964 SUPERFAMILY SSF52540 415 632 6.02E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_41045 aa8107f59493163cd4912321bbca6b2d 964 Hamap MF_01382 Protein translocase subunit SecA [secA]. 2 848 19.803 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RAM_41045 aa8107f59493163cd4912321bbca6b2d 964 SMART SM00958 225 357 7.8E-58 T 13-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 RAM_41045 aa8107f59493163cd4912321bbca6b2d 964 ProSitePatterns PS01312 SecA family signature. 499 514 - T 13-10-2018 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 RAM_41045 aa8107f59493163cd4912321bbca6b2d 964 Gene3D G3DSA:1.10.3060.10 635 849 3.9E-69 T 13-10-2018 RAM_41045 aa8107f59493163cd4912321bbca6b2d 964 Gene3D G3DSA:3.40.50.300 19 414 1.2E-177 T 13-10-2018 RAM_41045 aa8107f59493163cd4912321bbca6b2d 964 SMART SM00957 3 401 5.4E-275 T 13-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 RAM_41045 aa8107f59493163cd4912321bbca6b2d 964 Pfam PF07516 SecA Wing and Scaffold domain 631 845 2.6E-64 T 13-10-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 RAM_41045 aa8107f59493163cd4912321bbca6b2d 964 SUPERFAMILY SSF81886 634 851 8.89E-70 T 13-10-2018 IPR036266 SecA, Wing/Scaffold superfamily RAM_41045 aa8107f59493163cd4912321bbca6b2d 964 Gene3D G3DSA:3.40.50.300 416 633 2.7E-91 T 13-10-2018 RAM_41045 aa8107f59493163cd4912321bbca6b2d 964 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 25 833 0.0 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RAM_41045 aa8107f59493163cd4912321bbca6b2d 964 Gene3D G3DSA:3.90.1440.10 226 367 1.2E-177 T 13-10-2018 RAM_41045 aa8107f59493163cd4912321bbca6b2d 964 SUPERFAMILY SSF52540 8 414 1.33E-79 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_41045 aa8107f59493163cd4912321bbca6b2d 964 Pfam PF07517 SecA DEAD-like domain 6 400 6.0E-129 T 13-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 RAM_41045 aa8107f59493163cd4912321bbca6b2d 964 SUPERFAMILY SSF81767 260 367 9.68E-40 T 13-10-2018 IPR036670 SecA, preprotein cross-linking domain superfamily GO:0016020|GO:0017038 RAM_41045 aa8107f59493163cd4912321bbca6b2d 964 Pfam PF01043 SecA preprotein cross-linking domain 261 357 1.1E-33 T 13-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 RAM_20080 64774435a3112af3c147b72f463f1239 601 SUPERFAMILY SSF90123 14 311 3.79E-18 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RAM_20080 64774435a3112af3c147b72f463f1239 601 ProSitePatterns PS00211 ABC transporters family signature. 493 507 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_20080 64774435a3112af3c147b72f463f1239 601 Gene3D G3DSA:1.20.1560.10 5 332 7.6E-13 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RAM_20080 64774435a3112af3c147b72f463f1239 601 SUPERFAMILY SSF52540 336 592 2.5E-68 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_20080 64774435a3112af3c147b72f463f1239 601 SMART SM00382 371 568 2.0E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_20080 64774435a3112af3c147b72f463f1239 601 Pfam PF00005 ABC transporter 362 521 3.7E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_20080 64774435a3112af3c147b72f463f1239 601 Gene3D G3DSA:3.40.50.300 337 598 1.6E-77 T 13-10-2018 RAM_08585 4f1a5fc05ed94600855d81d5e2264cff 438 SMART SM00248 235 264 500.0 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 RAM_08585 4f1a5fc05ed94600855d81d5e2264cff 438 SMART SM00248 201 230 0.004 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 RAM_08585 4f1a5fc05ed94600855d81d5e2264cff 438 SMART SM00248 383 412 5.4E-6 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 RAM_08585 4f1a5fc05ed94600855d81d5e2264cff 438 SMART SM00248 343 372 0.018 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 RAM_08585 4f1a5fc05ed94600855d81d5e2264cff 438 SMART SM00248 311 340 1.2 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 RAM_08585 4f1a5fc05ed94600855d81d5e2264cff 438 SMART SM00248 168 197 380.0 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 RAM_08585 4f1a5fc05ed94600855d81d5e2264cff 438 Gene3D G3DSA:1.25.40.20 123 262 1.0E-19 T 13-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily RAM_08585 4f1a5fc05ed94600855d81d5e2264cff 438 SUPERFAMILY SSF48403 140 437 7.28E-41 T 13-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily RAM_08585 4f1a5fc05ed94600855d81d5e2264cff 438 Pfam PF12796 Ankyrin repeats (3 copies) 184 258 5.5E-8 T 13-10-2018 IPR020683 Ankyrin repeat-containing domain RAM_08585 4f1a5fc05ed94600855d81d5e2264cff 438 Pfam PF12796 Ankyrin repeats (3 copies) 268 372 1.4E-9 T 13-10-2018 IPR020683 Ankyrin repeat-containing domain RAM_08585 4f1a5fc05ed94600855d81d5e2264cff 438 Pfam PF00023 Ankyrin repeat 384 414 7.6E-7 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 RAM_08585 4f1a5fc05ed94600855d81d5e2264cff 438 Gene3D G3DSA:1.25.40.20 263 438 5.8E-31 T 13-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 ProSitePatterns PS00455 Putative AMP-binding domain signature. 2140 2151 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 Gene3D G3DSA:3.30.559.10 1083 1262 1.4E-47 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 Gene3D G3DSA:3.30.559.10 4196 4372 3.8E-38 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 Gene3D G3DSA:3.30.559.10 2593 2956 1.5E-124 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 SMART SM00823 Phosphopantetheine attachment site 1014 1082 6.0E-7 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 SMART SM00823 Phosphopantetheine attachment site 4120 4191 2.3E-4 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 SMART SM00823 Phosphopantetheine attachment site 3558 3626 4.4E-4 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 SMART SM00823 Phosphopantetheine attachment site 2509 2577 5.8E-4 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 Gene3D G3DSA:1.10.1200.10 1000 1082 1.1E-25 T 13-10-2018 IPR036736 ACP-like superfamily RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 Gene3D G3DSA:1.10.1200.10 4104 4195 6.1E-22 T 13-10-2018 IPR036736 ACP-like superfamily RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 Gene3D G3DSA:1.10.1200.10 2494 2576 3.6E-25 T 13-10-2018 IPR036736 ACP-like superfamily RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 Gene3D G3DSA:1.10.1200.10 3547 3625 8.8E-25 T 13-10-2018 IPR036736 ACP-like superfamily RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 3068 3472 4.8E-129 T 13-10-2018 IPR010071 Amino acid adenylation domain RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 2018 2423 5.1E-129 T 13-10-2018 IPR010071 Amino acid adenylation domain RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 527 931 4.3E-132 T 13-10-2018 IPR010071 Amino acid adenylation domain RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 SUPERFAMILY SSF52777 229 493 4.45E-56 T 13-10-2018 RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 SUPERFAMILY SSF56801 3005 3571 7.59E-148 T 13-10-2018 RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 TIGRFAM TIGR01720 NRPS-para261: non-ribosomal peptide synthase domain TIGR01720 1402 1522 2.9E-25 T 13-10-2018 IPR010060 Non-ribosomal peptide synthase RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 SUPERFAMILY SSF56801 466 1027 1.11E-144 T 13-10-2018 RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 Gene3D G3DSA:3.30.559.10 3653 3848 2.9E-59 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 Gene3D G3DSA:3.40.50.12780 1989 2392 1.8E-125 T 13-10-2018 RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 Gene3D G3DSA:3.40.50.12780 3040 3440 4.3E-125 T 13-10-2018 RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 SUPERFAMILY SSF52777 1722 1960 1.85E-54 T 13-10-2018 RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 SUPERFAMILY SSF52777 4388 4644 1.22E-35 T 13-10-2018 RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 SUPERFAMILY SSF56801 1956 2522 2.75E-148 T 13-10-2018 RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 SUPERFAMILY SSF52777 3665 3842 3.89E-42 T 13-10-2018 RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 SUPERFAMILY SSF52777 2770 3034 1.45E-55 T 13-10-2018 RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 SUPERFAMILY SSF52777 2594 2762 2.78E-37 T 13-10-2018 RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 Gene3D G3DSA:3.30.300.30 900 999 9.4E-33 T 13-10-2018 RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1038 1053 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 SUPERFAMILY SSF52777 4207 4377 4.22E-31 T 13-10-2018 RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 Gene3D G3DSA:3.40.710.10 4666 4991 1.7E-59 T 13-10-2018 RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 Gene3D G3DSA:3.30.300.30 2393 2493 3.7E-33 T 13-10-2018 RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 SUPERFAMILY SSF52777 1090 1267 1.89E-32 T 13-10-2018 RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 ProSitePatterns PS00012 Phosphopantetheine attachment site. 2533 2548 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 Pfam PF00668 Condensation domain 4222 4634 5.6E-47 T 13-10-2018 IPR001242 Condensation domain RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 Pfam PF00668 Condensation domain 2592 3025 4.6E-87 T 13-10-2018 IPR001242 Condensation domain RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 Pfam PF00668 Condensation domain 43 484 1.2E-94 T 13-10-2018 IPR001242 Condensation domain RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 Pfam PF00668 Condensation domain 1539 1975 5.2E-73 T 13-10-2018 IPR001242 Condensation domain RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 Pfam PF00668 Condensation domain 3659 4090 2.3E-64 T 13-10-2018 IPR001242 Condensation domain RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 Pfam PF00668 Condensation domain 1097 1501 1.5E-47 T 13-10-2018 IPR001242 Condensation domain RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 SUPERFAMILY SSF47336 2501 2572 8.51E-18 T 13-10-2018 IPR036736 ACP-like superfamily RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 Pfam PF00144 Beta-lactamase 4667 4980 1.1E-46 T 13-10-2018 IPR001466 Beta-lactamase-related RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 ProSitePatterns PS00012 Phosphopantetheine attachment site. 3582 3597 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 SUPERFAMILY SSF52777 3845 4079 1.89E-48 T 13-10-2018 RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 SUPERFAMILY SSF47336 4113 4185 9.55E-16 T 13-10-2018 IPR036736 ACP-like superfamily RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 Gene3D G3DSA:3.30.300.30 3442 3546 5.1E-36 T 13-10-2018 RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 Pfam PF00550 Phosphopantetheine attachment site 2511 2572 1.9E-13 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 Pfam PF00550 Phosphopantetheine attachment site 1017 1078 9.8E-14 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 Pfam PF00550 Phosphopantetheine attachment site 4122 4185 8.9E-12 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 Pfam PF00550 Phosphopantetheine attachment site 3560 3620 7.3E-13 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 Gene3D G3DSA:3.30.559.10 1544 1908 1.1E-123 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 Gene3D G3DSA:3.30.559.30 225 470 5.3E-126 T 13-10-2018 RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 Gene3D G3DSA:3.30.559.30 4373 4640 6.9E-65 T 13-10-2018 RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 Gene3D G3DSA:3.30.559.30 1263 1501 8.8E-57 T 13-10-2018 RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 Gene3D G3DSA:3.40.50.12780 497 899 3.8E-126 T 13-10-2018 RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 SUPERFAMILY SSF52777 1544 1721 2.78E-41 T 13-10-2018 RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 Pfam PF00501 AMP-binding enzyme 3046 3448 1.9E-87 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 Pfam PF00501 AMP-binding enzyme 505 907 1.5E-86 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 Pfam PF00501 AMP-binding enzyme 1999 2399 1.1E-86 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 ProSitePatterns PS00455 Putative AMP-binding domain signature. 3190 3201 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 SUPERFAMILY SSF47336 1008 1079 1.18E-18 T 13-10-2018 IPR036736 ACP-like superfamily RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 ProSitePatterns PS00455 Putative AMP-binding domain signature. 649 660 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 SUPERFAMILY SSF52777 45 221 1.11E-41 T 13-10-2018 RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 SUPERFAMILY SSF52777 1282 1499 2.22E-33 T 13-10-2018 RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 SUPERFAMILY SSF56601 4667 4977 1.49E-56 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 Gene3D G3DSA:3.30.559.30 3849 4096 9.8E-55 T 13-10-2018 RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 SUPERFAMILY SSF47336 3552 3622 3.27E-18 T 13-10-2018 IPR036736 ACP-like superfamily RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 Pfam PF13193 AMP-binding enzyme C-terminal domain 915 986 3.8E-10 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 Pfam PF13193 AMP-binding enzyme C-terminal domain 3456 3531 4.0E-12 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 Pfam PF13193 AMP-binding enzyme C-terminal domain 2407 2482 4.4E-13 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 Gene3D G3DSA:3.30.559.30 1723 1973 1.1E-123 T 13-10-2018 RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 Gene3D G3DSA:3.30.559.10 44 414 5.3E-126 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_24265 9ce9719302af539f00f784d53c8972b7 4998 Gene3D G3DSA:3.30.559.30 2766 3012 1.5E-124 T 13-10-2018 RAM_44215 174281ca3bde066a678d64191108adab 193 SUPERFAMILY SSF46689 3 79 4.67E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_44215 174281ca3bde066a678d64191108adab 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 2.3E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_44215 174281ca3bde066a678d64191108adab 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 2.3E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_44215 174281ca3bde066a678d64191108adab 193 Pfam PF13977 BetI-type transcriptional repressor, C-terminal 93 177 1.8E-8 T 13-10-2018 IPR039538 BetI-type transcriptional repressor, C-terminal RAM_44215 174281ca3bde066a678d64191108adab 193 SUPERFAMILY SSF48498 86 188 1.3E-16 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_44215 174281ca3bde066a678d64191108adab 193 Gene3D G3DSA:1.10.357.10 1 191 1.7E-40 T 13-10-2018 RAM_44215 174281ca3bde066a678d64191108adab 193 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 59 1.6E-14 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_45375 40fcd7eeb19596f28ecb2ee2af323672 256 Gene3D G3DSA:3.60.15.10 6 186 3.6E-42 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_45375 40fcd7eeb19596f28ecb2ee2af323672 256 SUPERFAMILY SSF56281 23 253 1.31E-47 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_45375 40fcd7eeb19596f28ecb2ee2af323672 256 Gene3D G3DSA:1.10.10.10 190 255 2.5E-11 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_45375 40fcd7eeb19596f28ecb2ee2af323672 256 Pfam PF00753 Metallo-beta-lactamase superfamily 29 182 9.0E-16 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_45375 40fcd7eeb19596f28ecb2ee2af323672 256 SMART SM00849 31 182 6.0E-26 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_45575 c4a67034848d3cd2a49cc90b007356af 421 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 63 406 7.5E-116 T 13-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RAM_45575 c4a67034848d3cd2a49cc90b007356af 421 Pfam PF13840 ACT domain 341 403 2.5E-14 T 13-10-2018 IPR027795 CASTOR, ACT domain RAM_45575 c4a67034848d3cd2a49cc90b007356af 421 Pfam PF01842 ACT domain 269 329 5.6E-9 T 13-10-2018 IPR002912 ACT domain RAM_45575 c4a67034848d3cd2a49cc90b007356af 421 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 2 407 1.9E-122 T 13-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RAM_45575 c4a67034848d3cd2a49cc90b007356af 421 Gene3D G3DSA:3.30.2130.10 249 421 4.4E-64 T 13-10-2018 RAM_45575 c4a67034848d3cd2a49cc90b007356af 421 PRINTS PR00474 Glutamate 5-kinase family signature 205 225 4.4E-5 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 RAM_45575 c4a67034848d3cd2a49cc90b007356af 421 PRINTS PR00474 Glutamate 5-kinase family signature 33 47 4.4E-5 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 RAM_45575 c4a67034848d3cd2a49cc90b007356af 421 PRINTS PR00474 Glutamate 5-kinase family signature 153 180 4.4E-5 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 RAM_45575 c4a67034848d3cd2a49cc90b007356af 421 PIRSF PIRSF000726 57 414 5.4E-129 T 13-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RAM_45575 c4a67034848d3cd2a49cc90b007356af 421 PIRSF PIRSF000726 1 61 1.7E-21 T 13-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RAM_45575 c4a67034848d3cd2a49cc90b007356af 421 Gene3D G3DSA:3.40.1160.10 1 248 1.2E-90 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RAM_45575 c4a67034848d3cd2a49cc90b007356af 421 SUPERFAMILY SSF55021 333 409 3.36E-22 T 13-10-2018 RAM_45575 c4a67034848d3cd2a49cc90b007356af 421 Pfam PF00696 Amino acid kinase family 3 231 4.5E-54 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 RAM_45575 c4a67034848d3cd2a49cc90b007356af 421 ProSitePatterns PS00324 Aspartokinase signature. 5 13 - T 13-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RAM_45575 c4a67034848d3cd2a49cc90b007356af 421 SUPERFAMILY SSF53633 4 244 7.99E-73 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RAM_45575 c4a67034848d3cd2a49cc90b007356af 421 SUPERFAMILY SSF55021 251 330 2.78E-17 T 13-10-2018 RAM_07065 8fa5f77e55bd5fa68d83c9098fba2c81 445 Pfam PF12730 ABC-2 family transporter protein 20 148 9.2E-7 T 13-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 RAM_27995 3d695c696b3dc56ca1903f022c084edf 227 Pfam PF00196 Bacterial regulatory proteins, luxR family 163 217 1.8E-16 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_27995 3d695c696b3dc56ca1903f022c084edf 227 SMART SM00448 3 116 1.4E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_27995 3d695c696b3dc56ca1903f022c084edf 227 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 177 4.3E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_27995 3d695c696b3dc56ca1903f022c084edf 227 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 177 193 4.3E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_27995 3d695c696b3dc56ca1903f022c084edf 227 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 193 205 4.3E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_27995 3d695c696b3dc56ca1903f022c084edf 227 SMART SM00421 160 217 1.6E-22 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_27995 3d695c696b3dc56ca1903f022c084edf 227 Pfam PF00072 Response regulator receiver domain 5 117 2.1E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_27995 3d695c696b3dc56ca1903f022c084edf 227 Gene3D G3DSA:3.40.50.12740 3 223 8.9E-67 T 13-10-2018 RAM_27995 3d695c696b3dc56ca1903f022c084edf 227 SUPERFAMILY SSF52172 2 133 2.7E-34 T 13-10-2018 IPR011006 CheY-like superfamily RAM_27995 3d695c696b3dc56ca1903f022c084edf 227 SUPERFAMILY SSF46894 155 223 2.38E-20 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_37050 ea33020b740fb1bdd11e7147d54a7ab9 372 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 128 146 2.0E-16 T 13-10-2018 RAM_37050 ea33020b740fb1bdd11e7147d54a7ab9 372 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 84 102 2.0E-16 T 13-10-2018 RAM_37050 ea33020b740fb1bdd11e7147d54a7ab9 372 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 214 230 2.0E-16 T 13-10-2018 RAM_37050 ea33020b740fb1bdd11e7147d54a7ab9 372 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 238 260 2.0E-16 T 13-10-2018 RAM_37050 ea33020b740fb1bdd11e7147d54a7ab9 372 Gene3D G3DSA:3.50.50.60 97 221 4.3E-91 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_37050 ea33020b740fb1bdd11e7147d54a7ab9 372 Gene3D G3DSA:3.50.50.60 1 283 4.3E-91 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_37050 ea33020b740fb1bdd11e7147d54a7ab9 372 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 283 6.8E-43 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAM_37050 ea33020b740fb1bdd11e7147d54a7ab9 372 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 128 153 1.7E-17 T 13-10-2018 RAM_37050 ea33020b740fb1bdd11e7147d54a7ab9 372 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 253 260 1.7E-17 T 13-10-2018 RAM_37050 ea33020b740fb1bdd11e7147d54a7ab9 372 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 215 229 1.7E-17 T 13-10-2018 RAM_37050 ea33020b740fb1bdd11e7147d54a7ab9 372 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 87 96 1.7E-17 T 13-10-2018 RAM_37050 ea33020b740fb1bdd11e7147d54a7ab9 372 Gene3D G3DSA:3.30.390.30 302 370 6.2E-11 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RAM_37050 ea33020b740fb1bdd11e7147d54a7ab9 372 SUPERFAMILY SSF51905 4 292 2.81E-32 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_37050 ea33020b740fb1bdd11e7147d54a7ab9 372 Pfam PF14759 Reductase C-terminal 302 363 1.1E-9 T 13-10-2018 IPR028202 Reductase, C-terminal RAM_37050 ea33020b740fb1bdd11e7147d54a7ab9 372 SUPERFAMILY SSF55424 294 365 2.88E-17 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RAM_43255 c26b693600a3de46d1c33558b6da42c9 448 SUPERFAMILY SSF52425 6 175 5.23E-46 T 13-10-2018 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily Reactome: R-HSA-400253 RAM_43255 c26b693600a3de46d1c33558b6da42c9 448 SUPERFAMILY SSF48173 183 446 3.01E-103 T 13-10-2018 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily Reactome: R-HSA-400253 RAM_43255 c26b693600a3de46d1c33558b6da42c9 448 Gene3D G3DSA:3.40.50.620 8 193 5.1E-68 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAM_43255 c26b693600a3de46d1c33558b6da42c9 448 Pfam PF03441 FAD binding domain of DNA photolyase 259 443 1.7E-77 T 13-10-2018 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain Reactome: R-HSA-400253 RAM_43255 c26b693600a3de46d1c33558b6da42c9 448 Gene3D G3DSA:1.25.40.80 127 270 5.1E-68 T 13-10-2018 RAM_43255 c26b693600a3de46d1c33558b6da42c9 448 Gene3D G3DSA:1.10.579.10 275 448 5.1E-75 T 13-10-2018 RAM_43255 c26b693600a3de46d1c33558b6da42c9 448 ProSitePatterns PS00394 DNA photolyases class 1 signature 1. 306 318 - T 13-10-2018 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal RAM_43255 c26b693600a3de46d1c33558b6da42c9 448 Pfam PF00875 DNA photolyase 7 158 7.7E-42 T 13-10-2018 IPR006050 DNA photolyase, N-terminal Reactome: R-HSA-400253 RAM_43255 c26b693600a3de46d1c33558b6da42c9 448 PRINTS PR00147 DNA photolyase signature 306 322 2.7E-25 T 13-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 RAM_43255 c26b693600a3de46d1c33558b6da42c9 448 PRINTS PR00147 DNA photolyase signature 138 154 2.7E-25 T 13-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 RAM_43255 c26b693600a3de46d1c33558b6da42c9 448 PRINTS PR00147 DNA photolyase signature 326 344 2.7E-25 T 13-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 RAM_43255 c26b693600a3de46d1c33558b6da42c9 448 PRINTS PR00147 DNA photolyase signature 365 379 2.7E-25 T 13-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 RAM_22530 58e7e5d12cb493236b52973c7bbeb3d4 345 SMART SM00344 185 290 0.004 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RAM_22530 58e7e5d12cb493236b52973c7bbeb3d4 345 Pfam PF13404 AsnC-type helix-turn-helix domain 190 225 3.9E-8 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_22530 58e7e5d12cb493236b52973c7bbeb3d4 345 Pfam PF13404 AsnC-type helix-turn-helix domain 18 57 2.8E-12 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_22530 58e7e5d12cb493236b52973c7bbeb3d4 345 Gene3D G3DSA:1.10.10.10 189 231 1.4E-6 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_22530 58e7e5d12cb493236b52973c7bbeb3d4 345 SUPERFAMILY SSF54909 76 153 3.49E-7 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_22530 58e7e5d12cb493236b52973c7bbeb3d4 345 Gene3D G3DSA:3.30.70.920 72 154 5.1E-7 T 13-10-2018 RAM_22530 58e7e5d12cb493236b52973c7bbeb3d4 345 Pfam PF01037 Lrp/AsnC ligand binding domain 83 146 4.1E-7 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RAM_22530 58e7e5d12cb493236b52973c7bbeb3d4 345 Gene3D G3DSA:1.10.10.10 15 62 5.5E-10 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_22530 58e7e5d12cb493236b52973c7bbeb3d4 345 SUPERFAMILY SSF46785 18 61 5.58E-5 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_47395 2dc1cf6640ae453f51d3263738a83f4f 190 Pfam PF02627 Carboxymuconolactone decarboxylase family 44 99 8.4E-13 T 13-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RAM_47395 2dc1cf6640ae453f51d3263738a83f4f 190 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 63 105 4.1E-12 T 13-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RAM_47395 2dc1cf6640ae453f51d3263738a83f4f 190 Gene3D G3DSA:1.20.5.810 11 63 2.1E-22 T 13-10-2018 RAM_47395 2dc1cf6640ae453f51d3263738a83f4f 190 TIGRFAM TIGR01926 peroxid_rel: uncharacterized peroxidase-related enzyme 5 180 5.5E-56 T 13-10-2018 IPR010195 Uncharacterised peroxidase-related RAM_47395 2dc1cf6640ae453f51d3263738a83f4f 190 Gene3D G3DSA:1.20.1290.10 64 187 4.0E-36 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_47395 2dc1cf6640ae453f51d3263738a83f4f 190 SUPERFAMILY SSF69118 4 188 1.55E-52 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_01730 a9e9f6763dafbf3c6735a9c4903b7df2 543 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 371 516 2.0E-34 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RAM_01730 a9e9f6763dafbf3c6735a9c4903b7df2 543 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 407 426 - T 13-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 RAM_01730 a9e9f6763dafbf3c6735a9c4903b7df2 543 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 1 164 4.5E-36 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RAM_01730 a9e9f6763dafbf3c6735a9c4903b7df2 543 Gene3D G3DSA:3.40.50.970 344 526 4.3E-54 T 13-10-2018 RAM_01730 a9e9f6763dafbf3c6735a9c4903b7df2 543 Gene3D G3DSA:3.40.50.970 1 174 9.5E-41 T 13-10-2018 RAM_01730 a9e9f6763dafbf3c6735a9c4903b7df2 543 Gene3D G3DSA:3.40.50.1220 181 339 4.8E-27 T 13-10-2018 RAM_01730 a9e9f6763dafbf3c6735a9c4903b7df2 543 SUPERFAMILY SSF52467 148 328 1.96E-28 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily RAM_01730 a9e9f6763dafbf3c6735a9c4903b7df2 543 SUPERFAMILY SSF52518 349 525 3.16E-53 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_01730 a9e9f6763dafbf3c6735a9c4903b7df2 543 SUPERFAMILY SSF52518 1 172 5.89E-37 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_01730 a9e9f6763dafbf3c6735a9c4903b7df2 543 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 184 288 2.0E-21 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 RAM_20465 4a2fcb470c73d596acb226a7ed93a956 321 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 1.5E-19 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_20465 4a2fcb470c73d596acb226a7ed93a956 321 Gene3D G3DSA:3.40.190.10 104 291 5.0E-11 T 13-10-2018 RAM_20465 4a2fcb470c73d596acb226a7ed93a956 321 Pfam PF03466 LysR substrate binding domain 105 292 7.8E-8 T 13-10-2018 IPR005119 LysR, substrate-binding RAM_20465 4a2fcb470c73d596acb226a7ed93a956 321 SUPERFAMILY SSF53850 104 297 5.33E-10 T 13-10-2018 RAM_20465 4a2fcb470c73d596acb226a7ed93a956 321 Gene3D G3DSA:3.40.190.10 162 268 5.0E-11 T 13-10-2018 RAM_20465 4a2fcb470c73d596acb226a7ed93a956 321 SUPERFAMILY SSF46785 3 83 2.87E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_20465 4a2fcb470c73d596acb226a7ed93a956 321 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 1.3E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_20465 4a2fcb470c73d596acb226a7ed93a956 321 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 1.3E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_20465 4a2fcb470c73d596acb226a7ed93a956 321 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 1.3E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_20465 4a2fcb470c73d596acb226a7ed93a956 321 Gene3D G3DSA:1.10.10.10 1 85 3.7E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_22825 204828927295de3effb907eba93bf906 1421 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 92 327 2.3E-83 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal RAM_22825 204828927295de3effb907eba93bf906 1421 SUPERFAMILY SSF52151 624 902 3.4E-58 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RAM_22825 204828927295de3effb907eba93bf906 1421 Gene3D G3DSA:3.40.50.1820 1158 1420 6.5E-48 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_22825 204828927295de3effb907eba93bf906 1421 Pfam PF00975 Thioesterase domain 1170 1265 5.5E-17 T 13-10-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 RAM_22825 204828927295de3effb907eba93bf906 1421 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 240 256 - T 13-10-2018 IPR018201 Beta-ketoacyl synthase, active site RAM_22825 204828927295de3effb907eba93bf906 1421 Gene3D G3DSA:3.40.366.10 624 918 1.5E-117 T 13-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 RAM_22825 204828927295de3effb907eba93bf906 1421 Gene3D G3DSA:1.10.1200.10 1 78 1.8E-21 T 13-10-2018 IPR036736 ACP-like superfamily RAM_22825 204828927295de3effb907eba93bf906 1421 Gene3D G3DSA:3.40.47.10 83 512 1.9E-182 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_22825 204828927295de3effb907eba93bf906 1421 Pfam PF00550 Phosphopantetheine attachment site 996 1058 1.3E-9 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_22825 204828927295de3effb907eba93bf906 1421 Pfam PF00550 Phosphopantetheine attachment site 11 72 8.4E-9 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_22825 204828927295de3effb907eba93bf906 1421 Gene3D G3DSA:1.10.1200.10 992 1067 6.9E-14 T 13-10-2018 IPR036736 ACP-like superfamily RAM_22825 204828927295de3effb907eba93bf906 1421 SUPERFAMILY SSF47336 996 1067 8.38E-12 T 13-10-2018 IPR036736 ACP-like superfamily RAM_22825 204828927295de3effb907eba93bf906 1421 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 453 574 1.2E-16 T 13-10-2018 IPR032821 Ketoacyl-synthetase, C-terminal extension Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_22825 204828927295de3effb907eba93bf906 1421 SMART SM00823 Phosphopantetheine attachment site 995 1066 1.9E-8 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_22825 204828927295de3effb907eba93bf906 1421 SMART SM00823 Phosphopantetheine attachment site 10 78 3.4E-9 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_22825 204828927295de3effb907eba93bf906 1421 SUPERFAMILY SSF53474 1152 1419 5.83E-46 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_22825 204828927295de3effb907eba93bf906 1421 Gene3D G3DSA:3.30.70.3290 536 960 1.5E-117 T 13-10-2018 RAM_22825 204828927295de3effb907eba93bf906 1421 SUPERFAMILY SSF47336 4 106 7.72E-15 T 13-10-2018 IPR036736 ACP-like superfamily RAM_22825 204828927295de3effb907eba93bf906 1421 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 626 915 2.1E-77 T 13-10-2018 IPR020801 Polyketide synthase, acyl transferase domain RAM_22825 204828927295de3effb907eba93bf906 1421 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 335 450 1.0E-40 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal RAM_22825 204828927295de3effb907eba93bf906 1421 SUPERFAMILY SSF55048 746 804 3.4E-8 T 13-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding RAM_22825 204828927295de3effb907eba93bf906 1421 SUPERFAMILY SSF53901 88 499 6.7E-91 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_22825 204828927295de3effb907eba93bf906 1421 Pfam PF00698 Acyl transferase domain 624 932 2.5E-75 T 13-10-2018 IPR014043 Acyl transferase RAM_22825 204828927295de3effb907eba93bf906 1421 SMART SM00825 Beta-ketoacyl synthase 94 503 4.5E-197 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RAM_22825 204828927295de3effb907eba93bf906 1421 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1021 1036 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_22825 204828927295de3effb907eba93bf906 1421 SMART SM00824 Thioesterase 1137 1419 0.0024 T 13-10-2018 IPR020802 Polyketide synthase, thioesterase domain GO:0009058|GO:0016788 RAM_35405 eb74267924d0400cf7a54effc0a444e8 253 Gene3D G3DSA:3.40.50.720 6 238 6.4E-72 T 13-10-2018 RAM_35405 eb74267924d0400cf7a54effc0a444e8 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 137 165 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_35405 eb74267924d0400cf7a54effc0a444e8 253 SUPERFAMILY SSF51735 2 235 5.63E-69 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_35405 eb74267924d0400cf7a54effc0a444e8 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 76 87 5.4E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_35405 eb74267924d0400cf7a54effc0a444e8 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 138 5.4E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_35405 eb74267924d0400cf7a54effc0a444e8 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 169 5.4E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_35405 eb74267924d0400cf7a54effc0a444e8 253 PIRSF PIRSF000126 1 245 1.3E-52 T 13-10-2018 RAM_35405 eb74267924d0400cf7a54effc0a444e8 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 5.7E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_35405 eb74267924d0400cf7a54effc0a444e8 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 169 5.7E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_35405 eb74267924d0400cf7a54effc0a444e8 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 188 5.7E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_35405 eb74267924d0400cf7a54effc0a444e8 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 76 87 5.7E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_35405 eb74267924d0400cf7a54effc0a444e8 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 124 140 5.7E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_35405 eb74267924d0400cf7a54effc0a444e8 253 Pfam PF00106 short chain dehydrogenase 4 191 8.8E-59 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_35405 eb74267924d0400cf7a54effc0a444e8 253 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 4 186 0.0089 T 13-10-2018 RAM_11470 10c3e33dfc4750a05835780b9f74cffc 366 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 15 364 3.8E-101 T 13-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 RAM_11470 10c3e33dfc4750a05835780b9f74cffc 366 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 13 365 55.266 T 13-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 RAM_11470 10c3e33dfc4750a05835780b9f74cffc 366 Pfam PF00155 Aminotransferase class I and II 33 360 4.3E-59 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RAM_11470 10c3e33dfc4750a05835780b9f74cffc 366 Gene3D G3DSA:3.40.640.10 55 278 1.2E-130 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_11470 10c3e33dfc4750a05835780b9f74cffc 366 Gene3D G3DSA:3.90.1150.10 18 360 1.2E-130 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_11470 10c3e33dfc4750a05835780b9f74cffc 366 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 228 237 - T 13-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 RAM_11470 10c3e33dfc4750a05835780b9f74cffc 366 SUPERFAMILY SSF53383 32 361 1.86E-74 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_00770 298146ace67d3356889f415285811b8a 264 Gene3D G3DSA:3.20.180.10 168 255 2.1E-15 T 13-10-2018 IPR037119 Haem oxygenase HugZ-like superfamily RAM_00770 298146ace67d3356889f415285811b8a 264 Pfam PF10615 Protein of unknown function (DUF2470) 179 250 5.2E-8 T 13-10-2018 IPR019595 Domain of unknown function DUF2470 RAM_00770 298146ace67d3356889f415285811b8a 264 SUPERFAMILY SSF50475 41 259 3.92E-21 T 13-10-2018 RAM_14265 b152d017029cbb3e74d8a52e0e054744 540 Gene3D G3DSA:3.40.50.10490 51 215 3.2E-36 T 13-10-2018 RAM_14265 b152d017029cbb3e74d8a52e0e054744 540 Gene3D G3DSA:3.40.50.10490 327 383 1.4E-10 T 13-10-2018 RAM_14265 b152d017029cbb3e74d8a52e0e054744 540 PRINTS PR00662 Glucose-6-phosphate isomerase signature 191 209 5.8E-7 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RAM_14265 b152d017029cbb3e74d8a52e0e054744 540 PRINTS PR00662 Glucose-6-phosphate isomerase signature 87 106 5.8E-7 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RAM_14265 b152d017029cbb3e74d8a52e0e054744 540 PRINTS PR00662 Glucose-6-phosphate isomerase signature 265 286 5.8E-7 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RAM_14265 b152d017029cbb3e74d8a52e0e054744 540 SUPERFAMILY SSF53697 21 375 4.45E-77 T 13-10-2018 RAM_14265 b152d017029cbb3e74d8a52e0e054744 540 Gene3D G3DSA:3.40.50.10490 216 301 1.4E-10 T 13-10-2018 RAM_14265 b152d017029cbb3e74d8a52e0e054744 540 Pfam PF00342 Phosphoglucose isomerase 83 287 7.7E-9 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RAM_10920 5651c969c63d8fa57d423f82c6e92560 378 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 119 215 8.9E-27 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RAM_10920 5651c969c63d8fa57d423f82c6e92560 378 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 227 376 4.2E-45 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_10920 5651c969c63d8fa57d423f82c6e92560 378 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 121 133 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RAM_10920 5651c969c63d8fa57d423f82c6e92560 378 Gene3D G3DSA:1.10.540.10 7 117 2.5E-31 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_10920 5651c969c63d8fa57d423f82c6e92560 378 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 11 114 2.2E-30 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_10920 5651c969c63d8fa57d423f82c6e92560 378 Gene3D G3DSA:1.20.140.10 231 377 1.0E-48 T 13-10-2018 RAM_10920 5651c969c63d8fa57d423f82c6e92560 378 PIRSF PIRSF016578 8 81 0.0015 T 13-10-2018 RAM_10920 5651c969c63d8fa57d423f82c6e92560 378 PIRSF PIRSF016578 131 377 2.3E-10 T 13-10-2018 RAM_10920 5651c969c63d8fa57d423f82c6e92560 378 Gene3D G3DSA:2.40.110.10 118 230 1.2E-38 T 13-10-2018 RAM_10920 5651c969c63d8fa57d423f82c6e92560 378 SUPERFAMILY SSF56645 9 239 3.01E-75 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_10920 5651c969c63d8fa57d423f82c6e92560 378 SUPERFAMILY SSF47203 225 377 3.7E-51 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_16965 57bb726bcee4ae13245a1599b96b9d90 213 Pfam PF00440 Bacterial regulatory proteins, tetR family 27 71 6.8E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_16965 57bb726bcee4ae13245a1599b96b9d90 213 ProSitePatterns PS01081 TetR-type HTH domain signature. 39 70 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RAM_16965 57bb726bcee4ae13245a1599b96b9d90 213 Pfam PF16859 Bacterial transcriptional repressor C-terminal 95 181 1.6E-8 T 13-10-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RAM_16965 57bb726bcee4ae13245a1599b96b9d90 213 SUPERFAMILY SSF48498 94 201 1.09E-8 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_16965 57bb726bcee4ae13245a1599b96b9d90 213 SUPERFAMILY SSF46689 18 82 1.12E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_16965 57bb726bcee4ae13245a1599b96b9d90 213 Gene3D G3DSA:1.10.10.60 13 65 7.8E-17 T 13-10-2018 RAM_16965 57bb726bcee4ae13245a1599b96b9d90 213 Gene3D G3DSA:1.10.357.10 66 209 3.9E-12 T 13-10-2018 RAM_44930 374f91c84c48f01ce92bfc8064556bc4 172 Pfam PF00719 Inorganic pyrophosphatase 5 156 3.9E-54 T 13-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 RAM_44930 374f91c84c48f01ce92bfc8064556bc4 172 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 1 158 32.312 T 13-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 RAM_44930 374f91c84c48f01ce92bfc8064556bc4 172 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 52 58 - T 13-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 RAM_44930 374f91c84c48f01ce92bfc8064556bc4 172 SUPERFAMILY SSF50324 3 156 4.32E-57 T 13-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 RAM_44930 374f91c84c48f01ce92bfc8064556bc4 172 Gene3D G3DSA:3.90.80.10 1 160 3.2E-66 T 13-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 RAM_45455 6e36ddbfe5e47850a4fd459f31c1a56f 339 SUPERFAMILY SSF55729 167 331 1.75E-9 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_45455 6e36ddbfe5e47850a4fd459f31c1a56f 339 Pfam PF13480 Acetyltransferase (GNAT) domain 177 320 1.3E-5 T 13-10-2018 IPR038740 BioF2-like, acetyltransferase domain KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 RAM_26735 44f300d22d6be757f0cb9c2fac819f14 1009 SUPERFAMILY SSF49785 620 714 6.52E-17 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_26735 44f300d22d6be757f0cb9c2fac819f14 1009 SUPERFAMILY SSF49785 921 991 9.92E-8 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_26735 44f300d22d6be757f0cb9c2fac819f14 1009 Gene3D G3DSA:2.60.120.260 907 996 6.2E-9 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_26735 44f300d22d6be757f0cb9c2fac819f14 1009 Gene3D G3DSA:2.60.120.260 619 721 7.8E-21 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_26735 44f300d22d6be757f0cb9c2fac819f14 1009 Pfam PF00754 F5/8 type C domain 628 706 6.5E-16 T 13-10-2018 IPR000421 Coagulation factor 5/8 C-terminal domain RAM_40710 314b810c9deb5bf0ed04eabdec6e55d5 384 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 340 359 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RAM_40710 314b810c9deb5bf0ed04eabdec6e55d5 384 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 233 381 1.1E-49 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_40710 314b810c9deb5bf0ed04eabdec6e55d5 384 SUPERFAMILY SSF47203 233 381 4.83E-52 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_40710 314b810c9deb5bf0ed04eabdec6e55d5 384 SUPERFAMILY SSF56645 2 246 3.27E-77 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_40710 314b810c9deb5bf0ed04eabdec6e55d5 384 PIRSF PIRSF016578 135 382 3.5E-8 T 13-10-2018 RAM_40710 314b810c9deb5bf0ed04eabdec6e55d5 384 PIRSF PIRSF016578 10 111 0.0017 T 13-10-2018 RAM_40710 314b810c9deb5bf0ed04eabdec6e55d5 384 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 8 118 2.0E-35 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_40710 314b810c9deb5bf0ed04eabdec6e55d5 384 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 123 221 1.4E-18 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RAM_40710 314b810c9deb5bf0ed04eabdec6e55d5 384 Gene3D G3DSA:2.40.110.10 123 236 7.3E-34 T 13-10-2018 RAM_40710 314b810c9deb5bf0ed04eabdec6e55d5 384 Gene3D G3DSA:1.10.540.10 1 121 9.4E-42 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_40710 314b810c9deb5bf0ed04eabdec6e55d5 384 Gene3D G3DSA:1.20.140.10 237 382 1.8E-50 T 13-10-2018 RAM_40710 314b810c9deb5bf0ed04eabdec6e55d5 384 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 125 137 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RAM_27795 e52c73c0802d715b416bc3659213615e 733 Gene3D G3DSA:3.40.50.300 79 222 1.5E-13 T 13-10-2018 RAM_27795 e52c73c0802d715b416bc3659213615e 733 Gene3D G3DSA:1.25.40.10 470 723 2.9E-31 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_27795 e52c73c0802d715b416bc3659213615e 733 Pfam PF13424 Tetratricopeptide repeat 565 632 6.5E-9 T 13-10-2018 RAM_27795 e52c73c0802d715b416bc3659213615e 733 PRINTS PR00364 Disease resistance protein signature 279 293 8.8E-7 T 13-10-2018 RAM_27795 e52c73c0802d715b416bc3659213615e 733 PRINTS PR00364 Disease resistance protein signature 175 189 8.8E-7 T 13-10-2018 RAM_27795 e52c73c0802d715b416bc3659213615e 733 PRINTS PR00364 Disease resistance protein signature 116 131 8.8E-7 T 13-10-2018 RAM_27795 e52c73c0802d715b416bc3659213615e 733 Pfam PF13560 Helix-turn-helix domain 2 63 1.4E-12 T 13-10-2018 RAM_27795 e52c73c0802d715b416bc3659213615e 733 SUPERFAMILY SSF47413 1 61 1.8E-12 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_27795 e52c73c0802d715b416bc3659213615e 733 SMART SM00530 6 62 9.7E-12 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_27795 e52c73c0802d715b416bc3659213615e 733 SUPERFAMILY SSF48452 517 712 8.85E-20 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_27795 e52c73c0802d715b416bc3659213615e 733 SUPERFAMILY SSF52540 80 342 1.02E-17 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_27795 e52c73c0802d715b416bc3659213615e 733 Gene3D G3DSA:1.10.260.40 1 65 2.0E-13 T 13-10-2018 RAM_27795 e52c73c0802d715b416bc3659213615e 733 SMART SM00028 524 557 6.4 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_27795 e52c73c0802d715b416bc3659213615e 733 SMART SM00028 604 637 230.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_27795 e52c73c0802d715b416bc3659213615e 733 SMART SM00028 564 597 0.23 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_27795 e52c73c0802d715b416bc3659213615e 733 SMART SM00028 644 677 42.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_01960 02bd412797eacc4dddbaaa9fb7d22242 773 Pfam PF00563 EAL domain 529 764 4.4E-77 T 13-10-2018 IPR001633 EAL domain RAM_01960 02bd412797eacc4dddbaaa9fb7d22242 773 SUPERFAMILY SSF141868 528 771 7.32E-87 T 13-10-2018 IPR035919 EAL domain superfamily RAM_01960 02bd412797eacc4dddbaaa9fb7d22242 773 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 224 348 5.1E-10 T 13-10-2018 IPR000014 PAS domain RAM_01960 02bd412797eacc4dddbaaa9fb7d22242 773 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 6 121 1.3E-10 T 13-10-2018 IPR000014 PAS domain RAM_01960 02bd412797eacc4dddbaaa9fb7d22242 773 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 126 227 3.1E-9 T 13-10-2018 IPR000014 PAS domain RAM_01960 02bd412797eacc4dddbaaa9fb7d22242 773 Pfam PF13188 PAS domain 123 170 0.0026 T 13-10-2018 IPR000014 PAS domain RAM_01960 02bd412797eacc4dddbaaa9fb7d22242 773 SUPERFAMILY SSF55785 125 210 6.63E-15 T 13-10-2018 IPR035965 PAS domain superfamily RAM_01960 02bd412797eacc4dddbaaa9fb7d22242 773 Gene3D G3DSA:3.30.450.20 3 122 2.0E-14 T 13-10-2018 RAM_01960 02bd412797eacc4dddbaaa9fb7d22242 773 Gene3D G3DSA:3.30.450.20 218 344 1.0E-18 T 13-10-2018 RAM_01960 02bd412797eacc4dddbaaa9fb7d22242 773 SMART SM00267 346 513 5.5E-57 T 13-10-2018 IPR000160 GGDEF domain RAM_01960 02bd412797eacc4dddbaaa9fb7d22242 773 SUPERFAMILY SSF55785 219 344 7.85E-18 T 13-10-2018 IPR035965 PAS domain superfamily RAM_01960 02bd412797eacc4dddbaaa9fb7d22242 773 SMART SM00052 523 769 3.1E-106 T 13-10-2018 IPR001633 EAL domain RAM_01960 02bd412797eacc4dddbaaa9fb7d22242 773 SMART SM00091 227 293 0.0019 T 13-10-2018 IPR000014 PAS domain RAM_01960 02bd412797eacc4dddbaaa9fb7d22242 773 SMART SM00091 122 189 0.023 T 13-10-2018 IPR000014 PAS domain RAM_01960 02bd412797eacc4dddbaaa9fb7d22242 773 SMART SM00091 4 70 6.2E-7 T 13-10-2018 IPR000014 PAS domain RAM_01960 02bd412797eacc4dddbaaa9fb7d22242 773 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 355 511 4.7E-37 T 13-10-2018 IPR000160 GGDEF domain RAM_01960 02bd412797eacc4dddbaaa9fb7d22242 773 Pfam PF00990 Diguanylate cyclase, GGDEF domain 357 508 7.8E-40 T 13-10-2018 IPR000160 GGDEF domain RAM_01960 02bd412797eacc4dddbaaa9fb7d22242 773 Gene3D G3DSA:3.30.450.20 123 217 2.7E-13 T 13-10-2018 RAM_01960 02bd412797eacc4dddbaaa9fb7d22242 773 Pfam PF13426 PAS domain 14 113 3.2E-9 T 13-10-2018 IPR000014 PAS domain RAM_01960 02bd412797eacc4dddbaaa9fb7d22242 773 Pfam PF13426 PAS domain 238 345 1.6E-8 T 13-10-2018 IPR000014 PAS domain RAM_01960 02bd412797eacc4dddbaaa9fb7d22242 773 SUPERFAMILY SSF55785 6 112 6.93E-12 T 13-10-2018 IPR035965 PAS domain superfamily RAM_01960 02bd412797eacc4dddbaaa9fb7d22242 773 Gene3D G3DSA:3.30.70.270 351 526 5.7E-49 T 13-10-2018 RAM_01960 02bd412797eacc4dddbaaa9fb7d22242 773 Gene3D G3DSA:3.20.20.450 527 772 1.7E-97 T 13-10-2018 IPR035919 EAL domain superfamily RAM_01960 02bd412797eacc4dddbaaa9fb7d22242 773 SUPERFAMILY SSF55073 362 514 1.18E-40 T 13-10-2018 IPR029787 Nucleotide cyclase RAM_05710 0b72d2f4ca910afbf7d55154b7de12b7 840 Gene3D G3DSA:3.30.413.10 624 786 2.7E-35 T 13-10-2018 RAM_05710 0b72d2f4ca910afbf7d55154b7de12b7 840 Gene3D G3DSA:3.50.50.60 108 247 3.8E-84 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_05710 0b72d2f4ca910afbf7d55154b7de12b7 840 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 553 614 5.7E-10 T 13-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RAM_05710 0b72d2f4ca910afbf7d55154b7de12b7 840 PIRSF PIRSF037149 1 828 0.0 T 13-10-2018 IPR017121 Nitrite reductase [NAD(P)H], large subunit GO:0042128 RAM_05710 0b72d2f4ca910afbf7d55154b7de12b7 840 Gene3D G3DSA:1.10.10.1100 419 472 6.6E-10 T 13-10-2018 RAM_05710 0b72d2f4ca910afbf7d55154b7de12b7 840 Pfam PF04324 BFD-like [2Fe-2S] binding domain 420 468 1.2E-11 T 13-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain RAM_05710 0b72d2f4ca910afbf7d55154b7de12b7 840 Gene3D G3DSA:3.50.50.60 5 284 3.8E-84 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_05710 0b72d2f4ca910afbf7d55154b7de12b7 840 SUPERFAMILY SSF56014 626 800 3.4E-51 T 13-10-2018 RAM_05710 0b72d2f4ca910afbf7d55154b7de12b7 840 SUPERFAMILY SSF51905 3 193 3.33E-39 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_05710 0b72d2f4ca910afbf7d55154b7de12b7 840 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 150 168 2.1E-16 T 13-10-2018 RAM_05710 0b72d2f4ca910afbf7d55154b7de12b7 840 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 100 118 2.1E-16 T 13-10-2018 RAM_05710 0b72d2f4ca910afbf7d55154b7de12b7 840 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 235 251 2.1E-16 T 13-10-2018 RAM_05710 0b72d2f4ca910afbf7d55154b7de12b7 840 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 262 284 2.1E-16 T 13-10-2018 RAM_05710 0b72d2f4ca910afbf7d55154b7de12b7 840 PRINTS PR00397 Sirohaem Fe-binding site signature 672 690 2.9E-6 T 13-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RAM_05710 0b72d2f4ca910afbf7d55154b7de12b7 840 PRINTS PR00397 Sirohaem Fe-binding site signature 629 647 2.9E-6 T 13-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RAM_05710 0b72d2f4ca910afbf7d55154b7de12b7 840 SUPERFAMILY SSF55124 498 634 3.93E-24 T 13-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RAM_05710 0b72d2f4ca910afbf7d55154b7de12b7 840 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 70 288 9.8E-50 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAM_05710 0b72d2f4ca910afbf7d55154b7de12b7 840 TIGRFAM TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit 4 794 0.0 T 13-10-2018 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB GO:0008942|GO:0042128|GO:0050660|GO:0050661|GO:0055114 RAM_05710 0b72d2f4ca910afbf7d55154b7de12b7 840 SUPERFAMILY SSF51905 151 309 1.81E-28 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_05710 0b72d2f4ca910afbf7d55154b7de12b7 840 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 625 761 2.0E-20 T 13-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RAM_05710 0b72d2f4ca910afbf7d55154b7de12b7 840 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 672 688 - T 13-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RAM_09825 0ca5101815840b3a35e8959c094fae67 302 SUPERFAMILY SSF46785 9 115 4.13E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_09825 0ca5101815840b3a35e8959c094fae67 302 Gene3D G3DSA:3.40.190.10 95 285 1.2E-36 T 13-10-2018 RAM_09825 0ca5101815840b3a35e8959c094fae67 302 Gene3D G3DSA:1.10.10.10 6 91 3.8E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_09825 0ca5101815840b3a35e8959c094fae67 302 Pfam PF03466 LysR substrate binding domain 93 300 2.9E-32 T 13-10-2018 IPR005119 LysR, substrate-binding RAM_09825 0ca5101815840b3a35e8959c094fae67 302 SUPERFAMILY SSF53850 94 301 7.97E-31 T 13-10-2018 RAM_09825 0ca5101815840b3a35e8959c094fae67 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 66 1.7E-17 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_09825 0ca5101815840b3a35e8959c094fae67 302 Gene3D G3DSA:3.40.190.10 175 275 1.2E-36 T 13-10-2018 RAM_43510 f67a36502155836c8d1201dd95c03c78 219 PIRSF PIRSF000343 1 218 2.0E-60 T 13-10-2018 IPR002051 Haem oxygenase GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|MetaCyc: PWY-5874|Reactome: R-HSA-189483|Reactome: R-HSA-917937 RAM_43510 f67a36502155836c8d1201dd95c03c78 219 SUPERFAMILY SSF48613 9 211 8.75E-55 T 13-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 RAM_43510 f67a36502155836c8d1201dd95c03c78 219 Pfam PF01126 Heme oxygenase 9 209 7.4E-49 T 13-10-2018 IPR016053 Haem oxygenase-like GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|MetaCyc: PWY-5874|Reactome: R-HSA-189483|Reactome: R-HSA-917937 RAM_43510 f67a36502155836c8d1201dd95c03c78 219 Gene3D G3DSA:1.20.910.10 8 217 2.8E-61 T 13-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 RAM_43510 f67a36502155836c8d1201dd95c03c78 219 PRINTS PR00088 Haem oxygenase signature 163 184 2.4E-23 T 13-10-2018 IPR002051 Haem oxygenase GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|MetaCyc: PWY-5874|Reactome: R-HSA-189483|Reactome: R-HSA-917937 RAM_43510 f67a36502155836c8d1201dd95c03c78 219 PRINTS PR00088 Haem oxygenase signature 195 213 2.4E-23 T 13-10-2018 IPR002051 Haem oxygenase GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|MetaCyc: PWY-5874|Reactome: R-HSA-189483|Reactome: R-HSA-917937 RAM_43510 f67a36502155836c8d1201dd95c03c78 219 PRINTS PR00088 Haem oxygenase signature 69 94 2.4E-23 T 13-10-2018 IPR002051 Haem oxygenase GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|MetaCyc: PWY-5874|Reactome: R-HSA-189483|Reactome: R-HSA-917937 RAM_43510 f67a36502155836c8d1201dd95c03c78 219 PRINTS PR00088 Haem oxygenase signature 121 142 2.4E-23 T 13-10-2018 IPR002051 Haem oxygenase GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|MetaCyc: PWY-5874|Reactome: R-HSA-189483|Reactome: R-HSA-917937 RAM_43510 f67a36502155836c8d1201dd95c03c78 219 PRINTS PR00088 Haem oxygenase signature 44 69 2.4E-23 T 13-10-2018 IPR002051 Haem oxygenase GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|MetaCyc: PWY-5874|Reactome: R-HSA-189483|Reactome: R-HSA-917937 RAM_43510 f67a36502155836c8d1201dd95c03c78 219 PRINTS PR00088 Haem oxygenase signature 9 34 2.4E-23 T 13-10-2018 IPR002051 Haem oxygenase GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|MetaCyc: PWY-5874|Reactome: R-HSA-189483|Reactome: R-HSA-917937 RAM_31015 aceff8dcd2da84839df9920d2b371847 229 Pfam PF08713 DNA alkylation repair enzyme 11 228 1.3E-58 T 13-10-2018 IPR014825 DNA alkylation repair enzyme RAM_31015 aceff8dcd2da84839df9920d2b371847 229 SUPERFAMILY SSF48371 15 228 2.69E-46 T 13-10-2018 IPR016024 Armadillo-type fold RAM_31015 aceff8dcd2da84839df9920d2b371847 229 Gene3D G3DSA:1.25.10.90 2 229 4.0E-74 T 13-10-2018 RAM_20620 48b2b96f8a431daf561284e7e3a4bdb2 228 Gene3D G3DSA:1.10.10.10 1 73 9.4E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_20620 48b2b96f8a431daf561284e7e3a4bdb2 228 Gene3D G3DSA:1.25.40.10 75 227 2.8E-40 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_20620 48b2b96f8a431daf561284e7e3a4bdb2 228 SUPERFAMILY SSF46894 2 70 7.94E-11 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_20620 48b2b96f8a431daf561284e7e3a4bdb2 228 SMART SM00862 1 70 3.0E-4 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_20620 48b2b96f8a431daf561284e7e3a4bdb2 228 SUPERFAMILY SSF48452 72 225 1.83E-31 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_20620 48b2b96f8a431daf561284e7e3a4bdb2 228 SMART SM01043 77 221 3.5E-39 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_20620 48b2b96f8a431daf561284e7e3a4bdb2 228 Pfam PF00486 Transcriptional regulatory protein, C terminal 3 70 8.1E-11 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_20620 48b2b96f8a431daf561284e7e3a4bdb2 228 Pfam PF03704 Bacterial transcriptional activator domain 77 221 2.2E-39 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_37915 7888139eace826616481794c3e756181 361 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 137 9.0E-8 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_37915 7888139eace826616481794c3e756181 361 Gene3D G3DSA:3.40.50.720 152 304 1.5E-48 T 13-10-2018 RAM_37915 7888139eace826616481794c3e756181 361 Gene3D G3DSA:3.90.180.10 6 345 1.5E-48 T 13-10-2018 RAM_37915 7888139eace826616481794c3e756181 361 SUPERFAMILY SSF50129 1 179 1.49E-28 T 13-10-2018 IPR011032 GroES-like superfamily RAM_37915 7888139eace826616481794c3e756181 361 SUPERFAMILY SSF51735 158 327 3.93E-20 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_47360 4a6d46f74fe76fb7bb31a8c30f1d1e46 429 Gene3D G3DSA:3.40.47.10 4 429 3.3E-105 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_47360 4a6d46f74fe76fb7bb31a8c30f1d1e46 429 SUPERFAMILY SSF53901 12 286 7.27E-58 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_47360 4a6d46f74fe76fb7bb31a8c30f1d1e46 429 Pfam PF00108 Thiolase, N-terminal domain 12 278 9.4E-53 T 13-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 RAM_47360 4a6d46f74fe76fb7bb31a8c30f1d1e46 429 PIRSF PIRSF000429 6 429 2.5E-107 T 13-10-2018 IPR002155 Thiolase GO:0016747 RAM_47360 4a6d46f74fe76fb7bb31a8c30f1d1e46 429 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 14 428 3.7E-122 T 13-10-2018 IPR002155 Thiolase GO:0016747 RAM_47360 4a6d46f74fe76fb7bb31a8c30f1d1e46 429 Pfam PF02803 Thiolase, C-terminal domain 289 429 6.8E-32 T 13-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 RAM_47360 4a6d46f74fe76fb7bb31a8c30f1d1e46 429 SUPERFAMILY SSF53901 301 428 1.8E-30 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_42965 774c19e23c178ef9f33169e0a01abe51 387 Gene3D G3DSA:2.40.110.10 122 232 6.0E-40 T 13-10-2018 RAM_42965 774c19e23c178ef9f33169e0a01abe51 387 SUPERFAMILY SSF47203 225 378 2.74E-49 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_42965 774c19e23c178ef9f33169e0a01abe51 387 SUPERFAMILY SSF56645 2 238 2.88E-55 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_42965 774c19e23c178ef9f33169e0a01abe51 387 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 119 1.1E-13 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_42965 774c19e23c178ef9f33169e0a01abe51 387 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 123 213 1.1E-22 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RAM_42965 774c19e23c178ef9f33169e0a01abe51 387 Gene3D G3DSA:1.10.540.10 1 121 2.5E-19 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_42965 774c19e23c178ef9f33169e0a01abe51 387 Gene3D G3DSA:1.20.140.10 233 386 9.6E-46 T 13-10-2018 RAM_42965 774c19e23c178ef9f33169e0a01abe51 387 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 125 137 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RAM_42965 774c19e23c178ef9f33169e0a01abe51 387 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 227 376 1.4E-47 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_21835 4b3eb30dff751c7b5913707095ec00c7 337 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 34 296 1.1E-33 T 13-10-2018 IPR017039 Virulence factor BrkB RAM_21835 4b3eb30dff751c7b5913707095ec00c7 337 PIRSF PIRSF035875 20 316 7.8E-85 T 13-10-2018 IPR017039 Virulence factor BrkB RAM_21835 4b3eb30dff751c7b5913707095ec00c7 337 Pfam PF03631 Virulence factor BrkB 43 298 1.1E-65 T 13-10-2018 IPR017039 Virulence factor BrkB RAM_43740 2c2c8983eb93c2b55e643cd8e166f7fa 156 SUPERFAMILY SSF55040 11 153 1.7E-51 T 13-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RAM_43740 2c2c8983eb93c2b55e643cd8e166f7fa 156 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 4 149 7.9E-55 T 13-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RAM_43740 2c2c8983eb93c2b55e643cd8e166f7fa 156 Gene3D G3DSA:3.30.70.640 1 156 2.1E-58 T 13-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RAM_43740 2c2c8983eb93c2b55e643cd8e166f7fa 156 Pfam PF01967 MoaC family 15 148 3.2E-47 T 13-10-2018 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RAM_43740 2c2c8983eb93c2b55e643cd8e166f7fa 156 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase [moaC]. 2 156 33.093 T 13-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RAM_33160 57906b78fbe481a7f168d55cf8cde0da 854 Gene3D G3DSA:1.10.10.10 789 854 1.2E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_33160 57906b78fbe481a7f168d55cf8cde0da 854 SMART SM00421 791 848 5.9E-21 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_33160 57906b78fbe481a7f168d55cf8cde0da 854 SUPERFAMILY SSF46894 789 853 6.46E-17 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_33160 57906b78fbe481a7f168d55cf8cde0da 854 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 794 808 2.3E-7 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_33160 57906b78fbe481a7f168d55cf8cde0da 854 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 808 824 2.3E-7 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_33160 57906b78fbe481a7f168d55cf8cde0da 854 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 824 836 2.3E-7 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_33160 57906b78fbe481a7f168d55cf8cde0da 854 SUPERFAMILY SSF52540 31 217 3.7E-9 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_33160 57906b78fbe481a7f168d55cf8cde0da 854 Pfam PF00196 Bacterial regulatory proteins, luxR family 793 847 1.7E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_33160 57906b78fbe481a7f168d55cf8cde0da 854 SUPERFAMILY SSF48452 436 753 4.61E-14 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_33160 57906b78fbe481a7f168d55cf8cde0da 854 Gene3D G3DSA:1.25.40.10 432 767 1.8E-56 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_33160 57906b78fbe481a7f168d55cf8cde0da 854 Gene3D G3DSA:3.40.50.300 2 153 4.9E-8 T 13-10-2018 RAM_46505 1f6790fa2686994b5acf155c9d829813 475 PRINTS PR00149 Fumarate lyase superfamily signature 143 161 2.2E-11 T 13-10-2018 IPR000362 Fumarate lyase family RAM_46505 1f6790fa2686994b5acf155c9d829813 475 PRINTS PR00149 Fumarate lyase superfamily signature 98 116 2.2E-11 T 13-10-2018 IPR000362 Fumarate lyase family RAM_46505 1f6790fa2686994b5acf155c9d829813 475 PRINTS PR00149 Fumarate lyase superfamily signature 236 263 2.2E-11 T 13-10-2018 IPR000362 Fumarate lyase family RAM_46505 1f6790fa2686994b5acf155c9d829813 475 PRINTS PR00149 Fumarate lyase superfamily signature 279 295 2.2E-11 T 13-10-2018 IPR000362 Fumarate lyase family RAM_46505 1f6790fa2686994b5acf155c9d829813 475 Gene3D G3DSA:1.20.200.10 14 449 2.0E-143 T 13-10-2018 RAM_46505 1f6790fa2686994b5acf155c9d829813 475 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 11 452 1.4E-129 T 13-10-2018 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RAM_46505 1f6790fa2686994b5acf155c9d829813 475 Pfam PF00206 Lyase 42 303 8.9E-23 T 13-10-2018 IPR022761 Fumarate lyase, N-terminal RAM_46505 1f6790fa2686994b5acf155c9d829813 475 SMART SM00998 368 453 9.9E-17 T 13-10-2018 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RAM_46505 1f6790fa2686994b5acf155c9d829813 475 Pfam PF10397 Adenylosuccinate lyase C-terminus 369 452 9.4E-12 T 13-10-2018 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RAM_46505 1f6790fa2686994b5acf155c9d829813 475 Gene3D G3DSA:1.10.40.30 366 441 2.0E-143 T 13-10-2018 RAM_46505 1f6790fa2686994b5acf155c9d829813 475 Gene3D G3DSA:1.10.275.60 25 233 2.0E-143 T 13-10-2018 RAM_46505 1f6790fa2686994b5acf155c9d829813 475 SUPERFAMILY SSF48557 10 454 5.34E-83 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 RAM_46505 1f6790fa2686994b5acf155c9d829813 475 ProSitePatterns PS00163 Fumarate lyases signature. 279 288 - T 13-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 RAM_08615 4369dc2071b9eb259292384500874b98 345 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 232 251 - T 13-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 RAM_08615 4369dc2071b9eb259292384500874b98 345 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 3 317 1.1E-85 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 RAM_08615 4369dc2071b9eb259292384500874b98 345 SUPERFAMILY SSF53659 2 333 4.99E-104 T 13-10-2018 RAM_08615 4369dc2071b9eb259292384500874b98 345 Gene3D G3DSA:3.40.718.10 1 338 9.6E-125 T 13-10-2018 RAM_08615 4369dc2071b9eb259292384500874b98 345 SMART SM01329 2 334 1.5E-153 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 RAM_08615 4369dc2071b9eb259292384500874b98 345 Hamap MF_01035 3-isopropylmalate dehydrogenase [leuB]. 1 338 57.053 T 13-10-2018 IPR023698 3-isopropylmalate dehydrogenase GO:0003862|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 RAM_03590 ff79f83b021323d29e6d799d0b482bf8 37 SUPERFAMILY SSF57840 2 37 2.49E-15 T 13-10-2018 IPR035977 Ribosomal protein L36 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_03590 ff79f83b021323d29e6d799d0b482bf8 37 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 2 37 6.6E-21 T 13-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_03590 ff79f83b021323d29e6d799d0b482bf8 37 ProSitePatterns PS00828 Ribosomal protein L36 signature. 11 36 - T 13-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_03590 ff79f83b021323d29e6d799d0b482bf8 37 ProDom PD002101 RIBOSOMAL L36 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID B SUBUNIT DIRECT SEQUENCING 9 37 4.0E-9 T 13-10-2018 RAM_03590 ff79f83b021323d29e6d799d0b482bf8 37 Pfam PF00444 Ribosomal protein L36 2 37 1.8E-16 T 13-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_03590 ff79f83b021323d29e6d799d0b482bf8 37 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 37 16.29 T 13-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_30015 f38d3c7cdff1756bd6730e155ff8742c 495 Pfam PF13365 Trypsin-like peptidase domain 12 165 6.1E-9 T 13-10-2018 RAM_30015 f38d3c7cdff1756bd6730e155ff8742c 495 SUPERFAMILY SSF50494 3 206 3.0E-15 T 13-10-2018 IPR009003 Peptidase S1, PA clan RAM_14420 bf25dcecfb2a527f5b09b1b462af3e72 236 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 128 147 2.5E-10 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RAM_14420 bf25dcecfb2a527f5b09b1b462af3e72 236 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 23 39 2.5E-10 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RAM_14420 bf25dcecfb2a527f5b09b1b462af3e72 236 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 77 89 2.5E-10 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RAM_14420 bf25dcecfb2a527f5b09b1b462af3e72 236 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 18 162 3.0E-24 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RAM_14420 bf25dcecfb2a527f5b09b1b462af3e72 236 Gene3D G3DSA:2.10.109.10 32 164 5.3E-23 T 13-10-2018 RAM_14420 bf25dcecfb2a527f5b09b1b462af3e72 236 SUPERFAMILY SSF51306 22 162 2.41E-21 T 13-10-2018 IPR036286 LexA/Signal peptidase-like superfamily RAM_14420 bf25dcecfb2a527f5b09b1b462af3e72 236 Pfam PF10502 Signal peptidase, peptidase S26 80 160 9.2E-8 T 13-10-2018 IPR019533 Peptidase S26 RAM_23045 ba972bf4201eaa951604b5e146c9d7f3 1516 Gene3D G3DSA:3.30.450.40 715 877 6.2E-25 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_23045 ba972bf4201eaa951604b5e146c9d7f3 1516 SUPERFAMILY SSF55874 1017 1200 1.57E-44 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_23045 ba972bf4201eaa951604b5e146c9d7f3 1516 SMART SM00065 738 889 1.0E-10 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_23045 ba972bf4201eaa951604b5e146c9d7f3 1516 SUPERFAMILY SSF52172 1390 1514 4.27E-38 T 13-10-2018 IPR011006 CheY-like superfamily RAM_23045 ba972bf4201eaa951604b5e146c9d7f3 1516 Gene3D G3DSA:3.30.565.10 1027 1199 8.7E-48 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_23045 ba972bf4201eaa951604b5e146c9d7f3 1516 SMART SM00388 960 1028 3.4E-21 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_23045 ba972bf4201eaa951604b5e146c9d7f3 1516 SUPERFAMILY SSF55781 701 873 4.8E-30 T 13-10-2018 RAM_23045 ba972bf4201eaa951604b5e146c9d7f3 1516 Gene3D G3DSA:1.10.287.130 925 1026 6.0E-26 T 13-10-2018 RAM_23045 ba972bf4201eaa951604b5e146c9d7f3 1516 Gene3D G3DSA:1.20.1480.50 658 714 5.8E-5 T 13-10-2018 RAM_23045 ba972bf4201eaa951604b5e146c9d7f3 1516 SUPERFAMILY SSF58104 314 588 8.11E-16 T 13-10-2018 RAM_23045 ba972bf4201eaa951604b5e146c9d7f3 1516 SMART SM00304 386 438 4.5E-9 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_23045 ba972bf4201eaa951604b5e146c9d7f3 1516 SMART SM00304 570 622 1.9E-10 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_23045 ba972bf4201eaa951604b5e146c9d7f3 1516 SMART SM00304 18 70 0.055 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_23045 ba972bf4201eaa951604b5e146c9d7f3 1516 SMART SM00304 662 714 1.1E-11 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_23045 ba972bf4201eaa951604b5e146c9d7f3 1516 SMART SM00304 202 254 2.0E-9 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_23045 ba972bf4201eaa951604b5e146c9d7f3 1516 SMART SM00304 110 162 1.2E-10 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_23045 ba972bf4201eaa951604b5e146c9d7f3 1516 SMART SM00304 294 346 4.7E-9 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_23045 ba972bf4201eaa951604b5e146c9d7f3 1516 SMART SM00304 478 530 3.3E-9 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_23045 ba972bf4201eaa951604b5e146c9d7f3 1516 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1076 1196 3.5E-27 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_23045 ba972bf4201eaa951604b5e146c9d7f3 1516 SUPERFAMILY SSF58104 38 311 1.02E-17 T 13-10-2018 RAM_23045 ba972bf4201eaa951604b5e146c9d7f3 1516 SUPERFAMILY SSF58104 590 714 6.28E-12 T 13-10-2018 RAM_23045 ba972bf4201eaa951604b5e146c9d7f3 1516 SMART SM00448 1396 1510 1.8E-38 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_23045 ba972bf4201eaa951604b5e146c9d7f3 1516 SUPERFAMILY SSF47384 945 1030 9.22E-21 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RAM_23045 ba972bf4201eaa951604b5e146c9d7f3 1516 SMART SM00387 1075 1198 3.6E-38 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_23045 ba972bf4201eaa951604b5e146c9d7f3 1516 Pfam PF00512 His Kinase A (phospho-acceptor) domain 961 1028 9.7E-18 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_23045 ba972bf4201eaa951604b5e146c9d7f3 1516 Pfam PF13185 GAF domain 737 873 4.9E-21 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_23045 ba972bf4201eaa951604b5e146c9d7f3 1516 SUPERFAMILY SSF52172 1263 1341 2.7E-6 T 13-10-2018 IPR011006 CheY-like superfamily RAM_23045 ba972bf4201eaa951604b5e146c9d7f3 1516 Gene3D G3DSA:1.10.8.500 389 445 3.7E-9 T 13-10-2018 RAM_23045 ba972bf4201eaa951604b5e146c9d7f3 1516 Gene3D G3DSA:3.40.50.12740 1247 1349 4.8E-6 T 13-10-2018 RAM_23045 ba972bf4201eaa951604b5e146c9d7f3 1516 Gene3D G3DSA:3.40.50.12740 1395 1516 1.6E-43 T 13-10-2018 RAM_23045 ba972bf4201eaa951604b5e146c9d7f3 1516 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1182 1195 1.7E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_23045 ba972bf4201eaa951604b5e146c9d7f3 1516 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1158 1176 1.7E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_23045 ba972bf4201eaa951604b5e146c9d7f3 1516 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1141 1151 1.7E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_23045 ba972bf4201eaa951604b5e146c9d7f3 1516 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1123 1137 1.7E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_23045 ba972bf4201eaa951604b5e146c9d7f3 1516 Pfam PF00672 HAMP domain 663 711 3.0E-6 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_23045 ba972bf4201eaa951604b5e146c9d7f3 1516 Pfam PF00072 Response regulator receiver domain 1398 1511 2.3E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_23045 ba972bf4201eaa951604b5e146c9d7f3 1516 Gene3D G3DSA:2.60.120.260 472 567 4.0E-8 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_23045 ba972bf4201eaa951604b5e146c9d7f3 1516 Gene3D G3DSA:2.60.120.260 291 388 3.5E-9 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_23045 ba972bf4201eaa951604b5e146c9d7f3 1516 Gene3D G3DSA:2.60.120.260 105 198 5.2E-9 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_23045 ba972bf4201eaa951604b5e146c9d7f3 1516 Gene3D G3DSA:2.60.120.260 568 657 2.7E-8 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_23045 ba972bf4201eaa951604b5e146c9d7f3 1516 Gene3D G3DSA:2.60.120.260 199 290 2.1E-10 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_07305 63c02911ee007d2ee222ad7e6d087014 202 Gene3D G3DSA:1.10.357.10 59 193 1.8E-20 T 13-10-2018 RAM_07305 63c02911ee007d2ee222ad7e6d087014 202 SUPERFAMILY SSF46689 8 71 5.08E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_07305 63c02911ee007d2ee222ad7e6d087014 202 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 66 7.6E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_07305 63c02911ee007d2ee222ad7e6d087014 202 SUPERFAMILY SSF48498 79 197 9.78E-9 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_07305 63c02911ee007d2ee222ad7e6d087014 202 Gene3D G3DSA:1.10.10.60 5 58 4.1E-12 T 13-10-2018 RAM_07305 63c02911ee007d2ee222ad7e6d087014 202 Pfam PF16859 Bacterial transcriptional repressor C-terminal 78 190 1.4E-23 T 13-10-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RAM_36950 b64e98775655899c75c4b6a06dd5dc82 253 Pfam PF00106 short chain dehydrogenase 8 203 2.3E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36950 b64e98775655899c75c4b6a06dd5dc82 253 SUPERFAMILY SSF51735 3 248 3.49E-58 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_36950 b64e98775655899c75c4b6a06dd5dc82 253 Gene3D G3DSA:3.40.50.720 2 252 5.7E-65 T 13-10-2018 RAM_36950 b64e98775655899c75c4b6a06dd5dc82 253 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 194 3.4E-4 T 13-10-2018 RAM_36950 b64e98775655899c75c4b6a06dd5dc82 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 133 149 9.9E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36950 b64e98775655899c75c4b6a06dd5dc82 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 9.9E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36950 b64e98775655899c75c4b6a06dd5dc82 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 9.9E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36950 b64e98775655899c75c4b6a06dd5dc82 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 9.9E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36950 b64e98775655899c75c4b6a06dd5dc82 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 9.9E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36950 b64e98775655899c75c4b6a06dd5dc82 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 146 174 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_27215 b4d6c68eb91221404eb6cef9a9a50462 569 SUPERFAMILY SSF49785 333 563 2.55E-66 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_27215 b4d6c68eb91221404eb6cef9a9a50462 569 Pfam PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain 323 558 3.8E-51 T 13-10-2018 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 RAM_27215 b4d6c68eb91221404eb6cef9a9a50462 569 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 3 278 9.3E-59 T 13-10-2018 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 RAM_27215 b4d6c68eb91221404eb6cef9a9a50462 569 TIGRFAM TIGR00976 /NonD: hydrolase CocE/NonD family protein 1 564 4.6E-154 T 13-10-2018 IPR005674 CocE/Serine esterase GO:0016787 RAM_27215 b4d6c68eb91221404eb6cef9a9a50462 569 Gene3D G3DSA:1.10.3020.10 130 223 2.5E-104 T 13-10-2018 RAM_27215 b4d6c68eb91221404eb6cef9a9a50462 569 SUPERFAMILY SSF53474 1 341 7.71E-50 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_27215 b4d6c68eb91221404eb6cef9a9a50462 569 Gene3D G3DSA:2.60.120.260 347 567 2.0E-80 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_27215 b4d6c68eb91221404eb6cef9a9a50462 569 SMART SM00939 305 559 7.7E-88 T 13-10-2018 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 RAM_27215 b4d6c68eb91221404eb6cef9a9a50462 569 Gene3D G3DSA:3.40.50.1820 1 336 2.5E-104 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_20240 9f192f6ac3087f9fbc5fa2cad60abcfb 394 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 3 25 1.8E-11 T 13-10-2018 RAM_20240 9f192f6ac3087f9fbc5fa2cad60abcfb 394 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 147 162 1.8E-11 T 13-10-2018 RAM_20240 9f192f6ac3087f9fbc5fa2cad60abcfb 394 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 296 312 1.8E-11 T 13-10-2018 RAM_20240 9f192f6ac3087f9fbc5fa2cad60abcfb 394 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 281 296 1.8E-11 T 13-10-2018 RAM_20240 9f192f6ac3087f9fbc5fa2cad60abcfb 394 Pfam PF01494 FAD binding domain 4 324 2.2E-16 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_20240 9f192f6ac3087f9fbc5fa2cad60abcfb 394 Gene3D G3DSA:3.50.50.60 6 342 1.1E-73 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_20240 9f192f6ac3087f9fbc5fa2cad60abcfb 394 Gene3D G3DSA:3.30.9.50 39 271 1.1E-73 T 13-10-2018 RAM_20240 9f192f6ac3087f9fbc5fa2cad60abcfb 394 SUPERFAMILY SSF51905 2 370 1.65E-55 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_26660 e6c103121a1e119acb71c8ab8258364e 1619 Gene3D G3DSA:3.90.930.1 566 713 4.4E-6 T 13-10-2018 RAM_26660 e6c103121a1e119acb71c8ab8258364e 1619 Gene3D G3DSA:3.90.930.1 827 957 6.9E-11 T 13-10-2018 RAM_26660 e6c103121a1e119acb71c8ab8258364e 1619 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 644 684 8.6E-9 T 13-10-2018 IPR006530 YD repeat RAM_26660 e6c103121a1e119acb71c8ab8258364e 1619 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1120 1154 3.1E-5 T 13-10-2018 IPR006530 YD repeat RAM_26660 e6c103121a1e119acb71c8ab8258364e 1619 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 898 935 6.0E-4 T 13-10-2018 IPR006530 YD repeat RAM_26660 e6c103121a1e119acb71c8ab8258364e 1619 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1155 1185 7.4E-8 T 13-10-2018 IPR006530 YD repeat RAM_26660 e6c103121a1e119acb71c8ab8258364e 1619 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 558 593 1.1E-8 T 13-10-2018 IPR006530 YD repeat RAM_26660 e6c103121a1e119acb71c8ab8258364e 1619 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 877 906 3.9E-6 T 13-10-2018 IPR006530 YD repeat RAM_26660 e6c103121a1e119acb71c8ab8258364e 1619 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 835 876 2.3E-8 T 13-10-2018 IPR006530 YD repeat RAM_26660 e6c103121a1e119acb71c8ab8258364e 1619 SUPERFAMILY SSF140453 85 147 9.42E-5 T 13-10-2018 IPR036689 ESAT-6-like superfamily RAM_26660 e6c103121a1e119acb71c8ab8258364e 1619 Pfam PF05593 RHS Repeat 579 613 2.2E-5 T 13-10-2018 IPR031325 RHS repeat RAM_26660 e6c103121a1e119acb71c8ab8258364e 1619 Pfam PF05593 RHS Repeat 861 893 5.5E-8 T 13-10-2018 IPR031325 RHS repeat RAM_26660 e6c103121a1e119acb71c8ab8258364e 1619 Pfam PF05593 RHS Repeat 898 931 4.3E-5 T 13-10-2018 IPR031325 RHS repeat RAM_26660 e6c103121a1e119acb71c8ab8258364e 1619 Pfam PF05593 RHS Repeat 1155 1184 8.1E-8 T 13-10-2018 IPR031325 RHS repeat RAM_26660 e6c103121a1e119acb71c8ab8258364e 1619 Pfam PF05593 RHS Repeat 643 680 1.6E-5 T 13-10-2018 IPR031325 RHS repeat RAM_26660 e6c103121a1e119acb71c8ab8258364e 1619 Pfam PF05593 RHS Repeat 1134 1170 1.0E-11 T 13-10-2018 IPR031325 RHS repeat RAM_26660 e6c103121a1e119acb71c8ab8258364e 1619 Gene3D G3DSA:2.180.10.10 1079 1349 3.6E-33 T 13-10-2018 RAM_26660 e6c103121a1e119acb71c8ab8258364e 1619 Pfam PF03527 RHS protein 1245 1274 1.1E-8 T 13-10-2018 IPR001826 RHS protein RAM_26660 e6c103121a1e119acb71c8ab8258364e 1619 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 1284 1349 1.5E-21 T 13-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 RAM_30955 793b6f7aacc6ef1094dd9610e36b8f2d 471 Gene3D G3DSA:1.20.200.10 127 455 7.9E-167 T 13-10-2018 RAM_30955 793b6f7aacc6ef1094dd9610e36b8f2d 471 Gene3D G3DSA:1.10.40.30 368 440 7.9E-167 T 13-10-2018 RAM_30955 793b6f7aacc6ef1094dd9610e36b8f2d 471 ProSitePatterns PS00163 Fumarate lyases signature. 283 292 - T 13-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 RAM_30955 793b6f7aacc6ef1094dd9610e36b8f2d 471 PRINTS PR00149 Fumarate lyase superfamily signature 239 266 2.4E-28 T 13-10-2018 IPR000362 Fumarate lyase family RAM_30955 793b6f7aacc6ef1094dd9610e36b8f2d 471 PRINTS PR00149 Fumarate lyase superfamily signature 110 128 2.4E-28 T 13-10-2018 IPR000362 Fumarate lyase family RAM_30955 793b6f7aacc6ef1094dd9610e36b8f2d 471 PRINTS PR00149 Fumarate lyase superfamily signature 155 173 2.4E-28 T 13-10-2018 IPR000362 Fumarate lyase family RAM_30955 793b6f7aacc6ef1094dd9610e36b8f2d 471 PRINTS PR00149 Fumarate lyase superfamily signature 283 299 2.4E-28 T 13-10-2018 IPR000362 Fumarate lyase family RAM_30955 793b6f7aacc6ef1094dd9610e36b8f2d 471 Pfam PF14698 Argininosuccinate lyase C-terminal 371 439 9.6E-22 T 13-10-2018 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 RAM_30955 793b6f7aacc6ef1094dd9610e36b8f2d 471 Hamap MF_00006 Argininosuccinate lyase [argH]. 9 461 39.953 T 13-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 RAM_30955 793b6f7aacc6ef1094dd9610e36b8f2d 471 PRINTS PR00145 Argininosuccinate lyase family signature 283 299 1.6E-55 T 13-10-2018 RAM_30955 793b6f7aacc6ef1094dd9610e36b8f2d 471 PRINTS PR00145 Argininosuccinate lyase family signature 150 170 1.6E-55 T 13-10-2018 RAM_30955 793b6f7aacc6ef1094dd9610e36b8f2d 471 PRINTS PR00145 Argininosuccinate lyase family signature 239 263 1.6E-55 T 13-10-2018 RAM_30955 793b6f7aacc6ef1094dd9610e36b8f2d 471 PRINTS PR00145 Argininosuccinate lyase family signature 109 131 1.6E-55 T 13-10-2018 RAM_30955 793b6f7aacc6ef1094dd9610e36b8f2d 471 PRINTS PR00145 Argininosuccinate lyase family signature 318 337 1.6E-55 T 13-10-2018 RAM_30955 793b6f7aacc6ef1094dd9610e36b8f2d 471 PRINTS PR00145 Argininosuccinate lyase family signature 201 217 1.6E-55 T 13-10-2018 RAM_30955 793b6f7aacc6ef1094dd9610e36b8f2d 471 TIGRFAM TIGR00838 argH: argininosuccinate lyase 10 461 2.0E-181 T 13-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 RAM_30955 793b6f7aacc6ef1094dd9610e36b8f2d 471 Pfam PF00206 Lyase 20 308 1.3E-69 T 13-10-2018 IPR022761 Fumarate lyase, N-terminal RAM_30955 793b6f7aacc6ef1094dd9610e36b8f2d 471 Gene3D G3DSA:1.10.275.10 32 237 7.9E-167 T 13-10-2018 IPR024083 Fumarase/histidase, N-terminal RAM_30955 793b6f7aacc6ef1094dd9610e36b8f2d 471 SUPERFAMILY SSF48557 13 463 5.18E-135 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 RAM_25295 3e853556f3be8b8ad3bfa5359867c4af 458 SUPERFAMILY SSF140453 14 89 2.62E-5 T 13-10-2018 IPR036689 ESAT-6-like superfamily RAM_25295 3e853556f3be8b8ad3bfa5359867c4af 458 Gene3D G3DSA:1.10.287.1060 12 99 1.6E-5 T 13-10-2018 RAM_20185 afb86bc80f51cc7e415b6d7aeca0bc7d 290 SUPERFAMILY SSF51197 23 287 1.92E-74 T 13-10-2018 RAM_20185 afb86bc80f51cc7e415b6d7aeca0bc7d 290 Gene3D G3DSA:3.60.130.10 18 288 1.1E-77 T 13-10-2018 RAM_20185 afb86bc80f51cc7e415b6d7aeca0bc7d 290 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 25 280 4.8E-55 T 13-10-2018 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 RAM_07230 59632237eb02e8789dc82db2266bb393 188 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 56 1.1E-13 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_07230 59632237eb02e8789dc82db2266bb393 188 Gene3D G3DSA:1.10.357.10 1 187 2.8E-47 T 13-10-2018 RAM_07230 59632237eb02e8789dc82db2266bb393 188 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 5.1E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_07230 59632237eb02e8789dc82db2266bb393 188 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 5.1E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_07230 59632237eb02e8789dc82db2266bb393 188 SUPERFAMILY SSF46689 11 73 7.7E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_25670 a4154a905615c4bc3f02bf8f646fce3f 696 Gene3D G3DSA:2.60.40.1180 601 696 3.8E-14 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta RAM_25670 a4154a905615c4bc3f02bf8f646fce3f 696 SUPERFAMILY SSF51445 296 626 3.96E-99 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_25670 a4154a905615c4bc3f02bf8f646fce3f 696 Gene3D G3DSA:2.70.98.60 2 281 2.6E-65 T 13-10-2018 IPR038417 Alpha-galactosidase, N-terminal domain superfamily KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_25670 a4154a905615c4bc3f02bf8f646fce3f 696 Pfam PF16874 Glycosyl hydrolase family 36 C-terminal domain 617 691 1.8E-14 T 13-10-2018 IPR031705 Glycosyl hydrolase family 36, C-terminal KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_25670 a4154a905615c4bc3f02bf8f646fce3f 696 PIRSF PIRSF005536 2 694 4.7E-180 T 13-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_25670 a4154a905615c4bc3f02bf8f646fce3f 696 Gene3D G3DSA:3.20.20.70 283 600 4.1E-125 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_25670 a4154a905615c4bc3f02bf8f646fce3f 696 Pfam PF02065 Melibiase 263 603 1.3E-116 T 13-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_25670 a4154a905615c4bc3f02bf8f646fce3f 696 Pfam PF16875 Glycosyl hydrolase family 36 N-terminal domain 32 249 7.0E-48 T 13-10-2018 IPR031704 Glycosyl hydrolase family 36, N-terminal KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_25670 a4154a905615c4bc3f02bf8f646fce3f 696 PRINTS PR00743 Glycosyl hydrolase family 36 signature 436 451 1.3E-52 T 13-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_25670 a4154a905615c4bc3f02bf8f646fce3f 696 PRINTS PR00743 Glycosyl hydrolase family 36 signature 488 504 1.3E-52 T 13-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_25670 a4154a905615c4bc3f02bf8f646fce3f 696 PRINTS PR00743 Glycosyl hydrolase family 36 signature 513 529 1.3E-52 T 13-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_25670 a4154a905615c4bc3f02bf8f646fce3f 696 PRINTS PR00743 Glycosyl hydrolase family 36 signature 300 314 1.3E-52 T 13-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_25670 a4154a905615c4bc3f02bf8f646fce3f 696 PRINTS PR00743 Glycosyl hydrolase family 36 signature 328 343 1.3E-52 T 13-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_25670 a4154a905615c4bc3f02bf8f646fce3f 696 PRINTS PR00743 Glycosyl hydrolase family 36 signature 378 400 1.3E-52 T 13-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_25670 a4154a905615c4bc3f02bf8f646fce3f 696 PRINTS PR00743 Glycosyl hydrolase family 36 signature 264 284 1.3E-52 T 13-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_25670 a4154a905615c4bc3f02bf8f646fce3f 696 PRINTS PR00743 Glycosyl hydrolase family 36 signature 213 228 1.3E-52 T 13-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_32075 b5cef719db2342546b2cee01fb20a623 469 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 4 53 2.2E-6 T 13-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain RAM_32075 b5cef719db2342546b2cee01fb20a623 469 Gene3D G3DSA:3.40.50.720 2 90 1.9E-14 T 13-10-2018 RAM_32075 b5cef719db2342546b2cee01fb20a623 469 SUPERFAMILY SSF51984 3 91 2.75E-13 T 13-10-2018 RAM_32075 b5cef719db2342546b2cee01fb20a623 469 SUPERFAMILY SSF53623 105 310 6.54E-51 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RAM_32075 b5cef719db2342546b2cee01fb20a623 469 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 7 457 31.925 T 13-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RAM_32075 b5cef719db2342546b2cee01fb20a623 469 Gene3D G3DSA:3.90.190.20 319 461 9.3E-38 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 RAM_32075 b5cef719db2342546b2cee01fb20a623 469 ProSitePatterns PS01011 Folylpolyglutamate synthase signature 1. 110 134 - T 13-10-2018 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 RAM_32075 b5cef719db2342546b2cee01fb20a623 469 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 8 455 2.4E-119 T 13-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RAM_32075 b5cef719db2342546b2cee01fb20a623 469 Pfam PF08245 Mur ligase middle domain 112 293 3.8E-29 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 RAM_32075 b5cef719db2342546b2cee01fb20a623 469 Gene3D G3DSA:3.40.1190.10 91 311 1.4E-54 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RAM_32075 b5cef719db2342546b2cee01fb20a623 469 SUPERFAMILY SSF53244 314 455 3.25E-35 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 RAM_29950 61bb654e76b8e13ad0f7f33d12ce4ad9 684 Pfam PF13516 Leucine Rich repeat 531 552 0.032 T 13-10-2018 IPR001611 Leucine-rich repeat GO:0005515 RAM_29950 61bb654e76b8e13ad0f7f33d12ce4ad9 684 Pfam PF13516 Leucine Rich repeat 509 525 0.49 T 13-10-2018 IPR001611 Leucine-rich repeat GO:0005515 RAM_29950 61bb654e76b8e13ad0f7f33d12ce4ad9 684 Pfam PF13516 Leucine Rich repeat 477 497 0.018 T 13-10-2018 IPR001611 Leucine-rich repeat GO:0005515 RAM_29950 61bb654e76b8e13ad0f7f33d12ce4ad9 684 Pfam PF13516 Leucine Rich repeat 363 383 0.031 T 13-10-2018 IPR001611 Leucine-rich repeat GO:0005515 RAM_29950 61bb654e76b8e13ad0f7f33d12ce4ad9 684 SUPERFAMILY SSF52047 279 566 1.69E-30 T 13-10-2018 RAM_29950 61bb654e76b8e13ad0f7f33d12ce4ad9 684 Gene3D G3DSA:3.80.10.10 471 577 2.7E-18 T 13-10-2018 IPR032675 Leucine-rich repeat domain superfamily RAM_29950 61bb654e76b8e13ad0f7f33d12ce4ad9 684 Gene3D G3DSA:3.80.10.10 258 406 1.7E-16 T 13-10-2018 IPR032675 Leucine-rich repeat domain superfamily RAM_29950 61bb654e76b8e13ad0f7f33d12ce4ad9 684 Gene3D G3DSA:3.80.10.10 412 470 2.4E-6 T 13-10-2018 IPR032675 Leucine-rich repeat domain superfamily RAM_29950 61bb654e76b8e13ad0f7f33d12ce4ad9 684 SMART SM00368 476 503 4.3 T 13-10-2018 RAM_29950 61bb654e76b8e13ad0f7f33d12ce4ad9 684 SMART SM00368 530 557 2.9 T 13-10-2018 RAM_29950 61bb654e76b8e13ad0f7f33d12ce4ad9 684 SMART SM00368 428 452 140.0 T 13-10-2018 RAM_29950 61bb654e76b8e13ad0f7f33d12ce4ad9 684 SMART SM00368 361 388 0.094 T 13-10-2018 RAM_29950 61bb654e76b8e13ad0f7f33d12ce4ad9 684 SMART SM00368 504 526 78.0 T 13-10-2018 RAM_43205 d6306c758b3b4f2da8347b91282d0b54 365 SUPERFAMILY SSF51735 155 330 2.48E-41 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_43205 d6306c758b3b4f2da8347b91282d0b54 365 SUPERFAMILY SSF50129 314 365 2.02E-8 T 13-10-2018 IPR011032 GroES-like superfamily RAM_43205 d6306c758b3b4f2da8347b91282d0b54 365 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 147 2.5E-26 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_43205 d6306c758b3b4f2da8347b91282d0b54 365 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 62 76 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 RAM_43205 d6306c758b3b4f2da8347b91282d0b54 365 Gene3D G3DSA:3.40.50.720 167 308 4.6E-116 T 13-10-2018 RAM_43205 d6306c758b3b4f2da8347b91282d0b54 365 Gene3D G3DSA:3.90.180.10 10 362 4.6E-116 T 13-10-2018 RAM_43205 d6306c758b3b4f2da8347b91282d0b54 365 Pfam PF00107 Zinc-binding dehydrogenase 190 322 3.3E-25 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RAM_43205 d6306c758b3b4f2da8347b91282d0b54 365 SUPERFAMILY SSF50129 4 186 2.89E-53 T 13-10-2018 IPR011032 GroES-like superfamily RAM_43205 d6306c758b3b4f2da8347b91282d0b54 365 TIGRFAM TIGR03451 mycoS_dep_FDH: S-(hydroxymethyl)mycothiol dehydrogenase 4 365 2.3E-205 T 13-10-2018 IPR017816 S-(hydroxymethyl)mycothiol dehydrogenase MetaCyc: PWY-7908 RAM_04335 c9046b0c4f10e8f98053af8ecc6ccab4 256 SUPERFAMILY SSF54292 19 126 2.81E-24 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RAM_04335 c9046b0c4f10e8f98053af8ecc6ccab4 256 SUPERFAMILY SSF46548 127 252 8.2E-33 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 RAM_04335 c9046b0c4f10e8f98053af8ecc6ccab4 256 Gene3D G3DSA:3.10.20.30 10 126 2.9E-30 T 13-10-2018 IPR012675 Beta-grasp domain superfamily RAM_04335 c9046b0c4f10e8f98053af8ecc6ccab4 256 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 168 179 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RAM_04335 c9046b0c4f10e8f98053af8ecc6ccab4 256 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 25 248 8.9E-74 T 13-10-2018 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_04335 c9046b0c4f10e8f98053af8ecc6ccab4 256 Pfam PF13183 4Fe-4S dicluster domain 166 238 4.7E-11 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RAM_04335 c9046b0c4f10e8f98053af8ecc6ccab4 256 Gene3D G3DSA:1.10.1060.10 127 255 5.3E-48 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 RAM_04335 c9046b0c4f10e8f98053af8ecc6ccab4 256 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 22 132 8.3E-32 T 13-10-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_30100 09035e921e27c023e4b88a9aa3b9a904 311 Gene3D G3DSA:1.10.10.10 3 89 2.4E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_30100 09035e921e27c023e4b88a9aa3b9a904 311 SUPERFAMILY SSF53850 91 299 5.31E-37 T 13-10-2018 RAM_30100 09035e921e27c023e4b88a9aa3b9a904 311 Gene3D G3DSA:3.40.190.10 92 280 6.2E-46 T 13-10-2018 RAM_30100 09035e921e27c023e4b88a9aa3b9a904 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 1.3E-20 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_30100 09035e921e27c023e4b88a9aa3b9a904 311 Pfam PF03466 LysR substrate binding domain 91 295 1.7E-39 T 13-10-2018 IPR005119 LysR, substrate-binding RAM_30100 09035e921e27c023e4b88a9aa3b9a904 311 SUPERFAMILY SSF46785 2 111 2.59E-25 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_30100 09035e921e27c023e4b88a9aa3b9a904 311 Gene3D G3DSA:3.40.190.10 170 270 6.2E-46 T 13-10-2018 RAM_47835 a96898fd76f17bd34633043ed9cfd108 245 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 242 2.0E-59 T 13-10-2018 RAM_47835 a96898fd76f17bd34633043ed9cfd108 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 5.0E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_47835 a96898fd76f17bd34633043ed9cfd108 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 5.0E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_47835 a96898fd76f17bd34633043ed9cfd108 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 5.0E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_47835 a96898fd76f17bd34633043ed9cfd108 245 SUPERFAMILY SSF51735 4 243 6.76E-77 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_47835 a96898fd76f17bd34633043ed9cfd108 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.6E-38 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_47835 a96898fd76f17bd34633043ed9cfd108 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 207 227 1.6E-38 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_47835 a96898fd76f17bd34633043ed9cfd108 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 1.6E-38 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_47835 a96898fd76f17bd34633043ed9cfd108 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 1.6E-38 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_47835 a96898fd76f17bd34633043ed9cfd108 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 1.6E-38 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_47835 a96898fd76f17bd34633043ed9cfd108 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 1.6E-38 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_47835 a96898fd76f17bd34633043ed9cfd108 245 Gene3D G3DSA:3.40.50.720 1 244 4.7E-81 T 13-10-2018 RAM_47835 a96898fd76f17bd34633043ed9cfd108 245 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 185 4.6E-4 T 13-10-2018 RAM_11660 baa0df825d057411bdcc635bb5b61af4 208 SUPERFAMILY SSF48498 98 206 1.51E-27 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_11660 baa0df825d057411bdcc635bb5b61af4 208 SUPERFAMILY SSF46689 17 81 3.13E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_11660 baa0df825d057411bdcc635bb5b61af4 208 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 31 44 6.7E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_11660 baa0df825d057411bdcc635bb5b61af4 208 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 52 75 6.7E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_11660 baa0df825d057411bdcc635bb5b61af4 208 Gene3D G3DSA:1.10.10.60 18 78 2.9E-23 T 13-10-2018 RAM_11660 baa0df825d057411bdcc635bb5b61af4 208 Gene3D G3DSA:1.10.357.10 80 206 2.6E-35 T 13-10-2018 RAM_11660 baa0df825d057411bdcc635bb5b61af4 208 Pfam PF00440 Bacterial regulatory proteins, tetR family 31 76 4.1E-14 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_21885 e41b718998006db991d151a3521f24bd 331 SUPERFAMILY SSF48613 131 307 1.31E-10 T 13-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 RAM_21885 e41b718998006db991d151a3521f24bd 331 Gene3D G3DSA:1.20.910.10 121 324 3.6E-25 T 13-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 RAM_21885 e41b718998006db991d151a3521f24bd 331 Pfam PF14518 Iron-containing redox enzyme 135 307 1.8E-44 T 13-10-2018 RAM_21885 e41b718998006db991d151a3521f24bd 331 SMART SM01236 167 272 4.6E-32 T 13-10-2018 RAM_13905 cffe62e7553a27f9c799f80f9ede110c 369 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 15 338 1.1E-104 T 13-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 RAM_13905 cffe62e7553a27f9c799f80f9ede110c 369 SUPERFAMILY SSF56796 11 352 1.83E-97 T 13-10-2018 RAM_13905 cffe62e7553a27f9c799f80f9ede110c 369 PIRSF PIRSF001455 9 345 4.7E-96 T 13-10-2018 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 RAM_13905 cffe62e7553a27f9c799f80f9ede110c 369 Gene3D G3DSA:3.40.50.1970 1 171 5.3E-58 T 13-10-2018 RAM_13905 cffe62e7553a27f9c799f80f9ede110c 369 Gene3D G3DSA:1.20.1090.10 172 359 1.3E-68 T 13-10-2018 RAM_13905 cffe62e7553a27f9c799f80f9ede110c 369 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 4 358 62.719 T 13-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 RAM_13905 cffe62e7553a27f9c799f80f9ede110c 369 Pfam PF01761 3-dehydroquinate synthase 66 322 8.0E-94 T 13-10-2018 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 RAM_37730 150baace718455716c17edbc2366e555 238 Pfam PF04542 Sigma-70 region 2 17 80 1.1E-18 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_37730 150baace718455716c17edbc2366e555 238 Gene3D G3DSA:1.10.10.10 113 187 8.3E-13 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_37730 150baace718455716c17edbc2366e555 238 SUPERFAMILY SSF88946 8 86 1.49E-22 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_37730 150baace718455716c17edbc2366e555 238 Pfam PF08281 Sigma-70, region 4 130 182 1.4E-11 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_37730 150baace718455716c17edbc2366e555 238 SUPERFAMILY SSF88659 125 184 3.55E-11 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_37730 150baace718455716c17edbc2366e555 238 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 14 186 2.3E-25 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_37730 150baace718455716c17edbc2366e555 238 Gene3D G3DSA:1.10.1740.10 2 83 1.3E-23 T 13-10-2018 RAM_16270 552f3aa75421bde4ab8a02bb80448ef7 526 Pfam PF00553 Cellulose binding domain 428 514 1.9E-22 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_16270 552f3aa75421bde4ab8a02bb80448ef7 526 SUPERFAMILY SSF49384 422 514 6.7E-26 T 13-10-2018 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily GO:0030246 RAM_16270 552f3aa75421bde4ab8a02bb80448ef7 526 SUPERFAMILY SSF56112 76 396 1.84E-72 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_16270 552f3aa75421bde4ab8a02bb80448ef7 526 SMART SM00637 428 523 5.2E-20 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_16270 552f3aa75421bde4ab8a02bb80448ef7 526 ProSitePatterns PS00109 Tyrosine protein kinases specific active-site signature. 199 211 - T 13-10-2018 IPR008266 Tyrosine-protein kinase, active site GO:0004672|GO:0006468 RAM_16270 552f3aa75421bde4ab8a02bb80448ef7 526 Gene3D G3DSA:1.10.510.10 162 339 1.7E-42 T 13-10-2018 RAM_16270 552f3aa75421bde4ab8a02bb80448ef7 526 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 86 109 - T 13-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 RAM_16270 552f3aa75421bde4ab8a02bb80448ef7 526 Gene3D G3DSA:2.60.40.290 422 524 8.3E-26 T 13-10-2018 IPR012291 CBM2, carbohydrate-binding domain superfamily GO:0004553|GO:0030247 RAM_16270 552f3aa75421bde4ab8a02bb80448ef7 526 Pfam PF00069 Protein kinase domain 80 328 2.3E-47 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_16270 552f3aa75421bde4ab8a02bb80448ef7 526 Gene3D G3DSA:3.30.200.20 70 159 1.3E-27 T 13-10-2018 RAM_22055 60bedcd89a4e832f999f87390555f8d9 469 SUPERFAMILY SSF52540 147 376 1.65E-9 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_22055 60bedcd89a4e832f999f87390555f8d9 469 Gene3D G3DSA:3.40.50.300 148 305 1.7E-10 T 13-10-2018 RAM_22055 60bedcd89a4e832f999f87390555f8d9 469 SUPERFAMILY SSF52200 1 75 7.06E-10 T 13-10-2018 IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily RAM_22055 60bedcd89a4e832f999f87390555f8d9 469 Gene3D G3DSA:3.40.50.10140 1 127 6.8E-13 T 13-10-2018 IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily RAM_22055 60bedcd89a4e832f999f87390555f8d9 469 Pfam PF13676 TIR domain 1 81 8.6E-11 T 13-10-2018 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 RAM_33815 6479bac14e0a96ae388075ecc3460c2d 437 Gene3D G3DSA:1.20.1250.20 234 429 4.9E-7 T 13-10-2018 RAM_33815 6479bac14e0a96ae388075ecc3460c2d 437 Pfam PF07690 Major Facilitator Superfamily 9 387 3.3E-35 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_33815 6479bac14e0a96ae388075ecc3460c2d 437 Gene3D G3DSA:1.20.1720.10 1 223 3.7E-38 T 13-10-2018 RAM_33815 6479bac14e0a96ae388075ecc3460c2d 437 SUPERFAMILY SSF103473 2 424 2.49E-44 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_35885 15cd9dbd3097bc0fc618fc60a3b522c6 594 Pfam PF12229 Putative peptidoglycan binding domain 251 342 1.9E-9 T 13-10-2018 IPR022029 Putative peptidoglycan binding domain RAM_35885 15cd9dbd3097bc0fc618fc60a3b522c6 594 Pfam PF12229 Putative peptidoglycan binding domain 135 214 1.4E-5 T 13-10-2018 IPR022029 Putative peptidoglycan binding domain RAM_35885 15cd9dbd3097bc0fc618fc60a3b522c6 594 Pfam PF04294 VanW like protein 386 517 9.9E-41 T 13-10-2018 IPR007391 Vancomycin resistance VanW RAM_34920 16f59bc9d030bc0b6910baa82db4881f 148 SUPERFAMILY SSF54427 15 140 2.45E-27 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_34920 16f59bc9d030bc0b6910baa82db4881f 148 Gene3D G3DSA:3.10.450.50 12 142 2.9E-42 T 13-10-2018 RAM_34920 16f59bc9d030bc0b6910baa82db4881f 148 Pfam PF12680 SnoaL-like domain 24 129 9.0E-19 T 13-10-2018 IPR037401 SnoaL-like domain RAM_03495 e5339b905cbb9dab924da2e12918c167 139 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 127 1.3E-53 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_03495 e5339b905cbb9dab924da2e12918c167 139 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 82 93 - T 13-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_03495 e5339b905cbb9dab924da2e12918c167 139 Gene3D G3DSA:3.90.1170.10 2 138 3.1E-48 T 13-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 RAM_03495 e5339b905cbb9dab924da2e12918c167 139 PRINTS PR00060 Ribosomal protein L16 signature 58 87 4.2E-38 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_03495 e5339b905cbb9dab924da2e12918c167 139 PRINTS PR00060 Ribosomal protein L16 signature 42 53 4.2E-38 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_03495 e5339b905cbb9dab924da2e12918c167 139 PRINTS PR00060 Ribosomal protein L16 signature 24 36 4.2E-38 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_03495 e5339b905cbb9dab924da2e12918c167 139 PRINTS PR00060 Ribosomal protein L16 signature 88 117 4.2E-38 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_03495 e5339b905cbb9dab924da2e12918c167 139 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 134 37.07 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_03495 e5339b905cbb9dab924da2e12918c167 139 Pfam PF00252 Ribosomal protein L16p/L10e 4 132 1.1E-46 T 13-10-2018 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 RAM_03495 e5339b905cbb9dab924da2e12918c167 139 SUPERFAMILY SSF54686 2 136 8.77E-55 T 13-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 RAM_12190 db3a2ac50104a626d5bb833e69751fde 555 SUPERFAMILY SSF52540 207 430 2.54E-15 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_12190 db3a2ac50104a626d5bb833e69751fde 555 SUPERFAMILY SSF55073 47 121 2.83E-5 T 13-10-2018 IPR029787 Nucleotide cyclase RAM_12190 db3a2ac50104a626d5bb833e69751fde 555 Gene3D G3DSA:3.30.70.1230 3 167 3.8E-7 T 13-10-2018 IPR029787 Nucleotide cyclase RAM_12190 db3a2ac50104a626d5bb833e69751fde 555 Gene3D G3DSA:3.40.50.300 201 369 2.0E-13 T 13-10-2018 RAM_20030 b4ac8de60271562293584331221a0f6b 328 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 22 189 6.9E-19 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_20030 b4ac8de60271562293584331221a0f6b 328 SUPERFAMILY SSF54427 205 317 2.21E-8 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_20030 b4ac8de60271562293584331221a0f6b 328 Pfam PF04542 Sigma-70 region 2 23 83 7.1E-17 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_20030 b4ac8de60271562293584331221a0f6b 328 TIGRFAM TIGR02960 SigX5: RNA polymerase sigma-70 factor, TIGR02960 family 11 321 1.1E-95 T 13-10-2018 IPR014305 RNA polymerase sigma-G type, actinobacteria RAM_20030 b4ac8de60271562293584331221a0f6b 328 Pfam PF08281 Sigma-70, region 4 137 189 1.3E-12 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_20030 b4ac8de60271562293584331221a0f6b 328 Gene3D G3DSA:1.10.1740.10 3 87 3.1E-22 T 13-10-2018 RAM_20030 b4ac8de60271562293584331221a0f6b 328 SUPERFAMILY SSF88659 109 191 1.2E-11 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_20030 b4ac8de60271562293584331221a0f6b 328 Gene3D G3DSA:3.10.450.50 201 321 2.7E-12 T 13-10-2018 RAM_20030 b4ac8de60271562293584331221a0f6b 328 Gene3D G3DSA:1.10.10.10 120 194 8.1E-13 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_20030 b4ac8de60271562293584331221a0f6b 328 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 40 71 - T 13-10-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_20030 b4ac8de60271562293584331221a0f6b 328 SUPERFAMILY SSF88946 7 88 9.81E-21 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_22050 aca6d536f2bdfa2e566e70b92f3e3718 563 Gene3D G3DSA:1.10.560.10 6 519 2.0E-193 T 13-10-2018 IPR027413 GroEL-like equatorial domain superfamily RAM_22050 aca6d536f2bdfa2e566e70b92f3e3718 563 Gene3D G3DSA:3.30.260.10 136 409 2.0E-193 T 13-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily RAM_22050 aca6d536f2bdfa2e566e70b92f3e3718 563 SUPERFAMILY SSF48592 10 519 6.58E-68 T 13-10-2018 IPR027413 GroEL-like equatorial domain superfamily RAM_22050 aca6d536f2bdfa2e566e70b92f3e3718 563 TIGRFAM TIGR02348 GroEL: chaperonin GroL 2 523 1.2E-199 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RAM_22050 aca6d536f2bdfa2e566e70b92f3e3718 563 PRINTS PR00298 60kDa chaperonin signature 267 290 2.0E-55 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RAM_22050 aca6d536f2bdfa2e566e70b92f3e3718 563 PRINTS PR00298 60kDa chaperonin signature 82 109 2.0E-55 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RAM_22050 aca6d536f2bdfa2e566e70b92f3e3718 563 PRINTS PR00298 60kDa chaperonin signature 349 374 2.0E-55 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RAM_22050 aca6d536f2bdfa2e566e70b92f3e3718 563 PRINTS PR00298 60kDa chaperonin signature 397 418 2.0E-55 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RAM_22050 aca6d536f2bdfa2e566e70b92f3e3718 563 PRINTS PR00298 60kDa chaperonin signature 26 52 2.0E-55 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RAM_22050 aca6d536f2bdfa2e566e70b92f3e3718 563 SUPERFAMILY SSF52029 186 375 1.03E-60 T 13-10-2018 IPR027409 GroEL-like apical domain superfamily RAM_22050 aca6d536f2bdfa2e566e70b92f3e3718 563 SUPERFAMILY SSF54849 136 202 3.43E-16 T 13-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily RAM_22050 aca6d536f2bdfa2e566e70b92f3e3718 563 Gene3D G3DSA:3.50.7.10 191 372 2.0E-193 T 13-10-2018 IPR027409 GroEL-like apical domain superfamily RAM_22050 aca6d536f2bdfa2e566e70b92f3e3718 563 Pfam PF00118 TCP-1/cpn60 chaperonin family 22 521 4.0E-83 T 13-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 RAM_36760 e4fb62866bfbdc5c263e28a961b7527c 403 SUPERFAMILY SSF53822 42 365 5.46E-46 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_36760 e4fb62866bfbdc5c263e28a961b7527c 403 Gene3D G3DSA:3.40.50.2300 157 292 1.4E-36 T 13-10-2018 RAM_36760 e4fb62866bfbdc5c263e28a961b7527c 403 Pfam PF13458 Periplasmic binding protein 42 367 4.1E-47 T 13-10-2018 IPR028081 Leucine-binding protein domain RAM_36760 e4fb62866bfbdc5c263e28a961b7527c 403 Gene3D G3DSA:3.40.50.2300 61 344 1.4E-36 T 13-10-2018 RAM_21130 0dff5392dd7dbb9dd69ae2c77bca23c5 354 Gene3D G3DSA:2.40.50.140 199 335 5.3E-27 T 13-10-2018 RAM_21130 0dff5392dd7dbb9dd69ae2c77bca23c5 354 Pfam PF01068 ATP dependent DNA ligase domain 6 197 2.9E-37 T 13-10-2018 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 RAM_21130 0dff5392dd7dbb9dd69ae2c77bca23c5 354 SUPERFAMILY SSF56091 2 197 1.34E-43 T 13-10-2018 RAM_21130 0dff5392dd7dbb9dd69ae2c77bca23c5 354 Pfam PF04679 ATP dependent DNA ligase C terminal region 216 328 6.5E-13 T 13-10-2018 IPR012309 DNA ligase, ATP-dependent, C-terminal GO:0003910|GO:0006281|GO:0006310 RAM_21130 0dff5392dd7dbb9dd69ae2c77bca23c5 354 Gene3D G3DSA:3.30.470.30 3 197 9.5E-42 T 13-10-2018 RAM_21130 0dff5392dd7dbb9dd69ae2c77bca23c5 354 ProSitePatterns PS00697 ATP-dependent DNA ligase AMP-binding site. 24 32 - T 13-10-2018 IPR016059 DNA ligase, ATP-dependent, conserved site GO:0003909|GO:0051103 RAM_21130 0dff5392dd7dbb9dd69ae2c77bca23c5 354 SUPERFAMILY SSF50249 200 337 2.34E-12 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_07665 2a5102f4c3ba469344fe84d968387ff0 103 Gene3D G3DSA:1.10.10.10 4 100 7.8E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_07665 2a5102f4c3ba469344fe84d968387ff0 103 Pfam PF13601 Winged helix DNA-binding domain 22 97 1.0E-23 T 13-10-2018 IPR027395 Winged helix DNA-binding domain RAM_07665 2a5102f4c3ba469344fe84d968387ff0 103 SUPERFAMILY SSF46785 22 99 3.54E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_42780 6e57402dc58c281ab65803118a6435b0 360 PIRSF PIRSF000808 34 360 2.5E-110 T 13-10-2018 IPR001937 Galactose-1-phosphate uridyl transferase, class I GO:0008108|GO:0008270|GO:0033499 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 RAM_42780 6e57402dc58c281ab65803118a6435b0 360 Gene3D G3DSA:3.30.428.10 70 197 1.6E-95 T 13-10-2018 IPR036265 HIT-like superfamily RAM_42780 6e57402dc58c281ab65803118a6435b0 360 SUPERFAMILY SSF54197 202 359 5.44E-36 T 13-10-2018 IPR036265 HIT-like superfamily RAM_42780 6e57402dc58c281ab65803118a6435b0 360 ProSitePatterns PS00117 Galactose-1-phosphate uridyl transferase family 1 active site signature. 173 190 - T 13-10-2018 IPR019779 Galactose-1-phosphate uridyl transferase, class I His-active site KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 RAM_42780 6e57402dc58c281ab65803118a6435b0 360 Gene3D G3DSA:3.30.428.10 41 357 1.6E-95 T 13-10-2018 IPR036265 HIT-like superfamily RAM_42780 6e57402dc58c281ab65803118a6435b0 360 Pfam PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain 209 357 2.2E-18 T 13-10-2018 IPR005850 Galactose-1-phosphate uridyl transferase, C-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 RAM_42780 6e57402dc58c281ab65803118a6435b0 360 SUPERFAMILY SSF54197 37 198 1.38E-52 T 13-10-2018 IPR036265 HIT-like superfamily RAM_42780 6e57402dc58c281ab65803118a6435b0 360 TIGRFAM TIGR00209 galT_1: galactose-1-phosphate uridylyltransferase 40 358 1.3E-47 T 13-10-2018 IPR001937 Galactose-1-phosphate uridyl transferase, class I GO:0008108|GO:0008270|GO:0033499 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 RAM_42780 6e57402dc58c281ab65803118a6435b0 360 Pfam PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain 39 197 1.0E-39 T 13-10-2018 IPR005849 Galactose-1-phosphate uridyl transferase, N-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 RAM_27970 02397f1bee660069d6d3924439233f3f 173 SUPERFAMILY SSF52218 1 170 1.08E-14 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RAM_27970 02397f1bee660069d6d3924439233f3f 173 Gene3D G3DSA:3.40.50.360 3 146 4.2E-15 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RAM_27970 02397f1bee660069d6d3924439233f3f 173 ProSitePatterns PS00201 Flavodoxin signature. 5 21 - T 13-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 RAM_32600 a644efcbdba896a8ed8bee7327188160 228 SMART SM00862 153 225 6.4E-27 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_32600 a644efcbdba896a8ed8bee7327188160 228 SUPERFAMILY SSF52172 7 130 1.32E-37 T 13-10-2018 IPR011006 CheY-like superfamily RAM_32600 a644efcbdba896a8ed8bee7327188160 228 Gene3D G3DSA:1.10.10.10 124 228 3.1E-32 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_32600 a644efcbdba896a8ed8bee7327188160 228 Pfam PF00072 Response regulator receiver domain 9 118 5.9E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_32600 a644efcbdba896a8ed8bee7327188160 228 SUPERFAMILY SSF46894 132 224 5.95E-27 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_32600 a644efcbdba896a8ed8bee7327188160 228 Pfam PF00486 Transcriptional regulatory protein, C terminal 154 224 2.3E-25 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_32600 a644efcbdba896a8ed8bee7327188160 228 Gene3D G3DSA:3.40.50.2300 3 123 2.6E-32 T 13-10-2018 RAM_32600 a644efcbdba896a8ed8bee7327188160 228 SMART SM00448 7 118 2.9E-37 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_26570 f2fdb6ce072ece7096876e569015fa91 266 Pfam PF03861 ANTAR domain 200 252 7.8E-22 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 RAM_26570 f2fdb6ce072ece7096876e569015fa91 266 PIRSF PIRSF036625 16 262 7.0E-55 T 13-10-2018 IPR012074 GAF-ANTAR transcription anti-termination regulator, putative RAM_26570 f2fdb6ce072ece7096876e569015fa91 266 Gene3D G3DSA:1.10.10.10 200 259 6.9E-13 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_26570 f2fdb6ce072ece7096876e569015fa91 266 Pfam PF13185 GAF domain 43 186 7.4E-10 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_26570 f2fdb6ce072ece7096876e569015fa91 266 SUPERFAMILY SSF55781 50 195 4.58E-16 T 13-10-2018 RAM_26570 f2fdb6ce072ece7096876e569015fa91 266 SUPERFAMILY SSF52172 178 252 1.24E-11 T 13-10-2018 IPR011006 CheY-like superfamily RAM_26570 f2fdb6ce072ece7096876e569015fa91 266 SMART SM01012 198 253 1.2E-23 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 RAM_26570 f2fdb6ce072ece7096876e569015fa91 266 Gene3D G3DSA:3.30.450.40 27 198 2.4E-17 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_23500 084720463766baa59e0a8410ccdf3499 1194 Pfam PF07705 CARDB 413 513 8.9E-24 T 13-10-2018 IPR011635 CARDB domain RAM_23500 084720463766baa59e0a8410ccdf3499 1194 Pfam PF07705 CARDB 526 630 3.4E-5 T 13-10-2018 IPR011635 CARDB domain RAM_23500 084720463766baa59e0a8410ccdf3499 1194 Gene3D G3DSA:2.60.40.10 518 640 2.3E-8 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_23500 084720463766baa59e0a8410ccdf3499 1194 SMART SM00231 28 174 1.3E-5 T 13-10-2018 IPR000421 Coagulation factor 5/8 C-terminal domain RAM_23500 084720463766baa59e0a8410ccdf3499 1194 Gene3D G3DSA:2.60.40.10 413 517 3.3E-22 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_23500 084720463766baa59e0a8410ccdf3499 1194 SUPERFAMILY SSF49785 271 409 1.49E-16 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_23500 084720463766baa59e0a8410ccdf3499 1194 SUPERFAMILY SSF49785 45 174 9.22E-25 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_23500 084720463766baa59e0a8410ccdf3499 1194 SUPERFAMILY SSF49265 180 265 6.79E-7 T 13-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 RAM_23500 084720463766baa59e0a8410ccdf3499 1194 Gene3D G3DSA:2.60.120.260 271 411 7.3E-23 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_23500 084720463766baa59e0a8410ccdf3499 1194 Gene3D G3DSA:2.60.120.260 41 179 4.9E-30 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_23500 084720463766baa59e0a8410ccdf3499 1194 Pfam PF00754 F5/8 type C domain 49 169 1.8E-17 T 13-10-2018 IPR000421 Coagulation factor 5/8 C-terminal domain RAM_23500 084720463766baa59e0a8410ccdf3499 1194 Pfam PF00754 F5/8 type C domain 280 404 1.2E-6 T 13-10-2018 IPR000421 Coagulation factor 5/8 C-terminal domain RAM_23500 084720463766baa59e0a8410ccdf3499 1194 SUPERFAMILY SSF51126 821 1137 2.16E-27 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor RAM_23500 084720463766baa59e0a8410ccdf3499 1194 Gene3D G3DSA:2.60.40.10 180 266 2.4E-18 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_23500 084720463766baa59e0a8410ccdf3499 1194 SMART SM00710 965 987 1800.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_23500 084720463766baa59e0a8410ccdf3499 1194 SMART SM00710 941 963 11.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_23500 084720463766baa59e0a8410ccdf3499 1194 SMART SM00710 1020 1043 2000.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_23500 084720463766baa59e0a8410ccdf3499 1194 SMART SM00710 1090 1112 1300.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_23500 084720463766baa59e0a8410ccdf3499 1194 SMART SM00710 1123 1153 970.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_00725 fc83c6b775a076d2840a55115fe52f0f 388 Pfam PF00067 Cytochrome P450 73 357 6.9E-23 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_00725 fc83c6b775a076d2840a55115fe52f0f 388 Gene3D G3DSA:1.10.630.10 1 388 2.0E-114 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_00725 fc83c6b775a076d2840a55115fe52f0f 388 PRINTS PR00359 B-class P450 signature 79 90 1.5E-49 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_00725 fc83c6b775a076d2840a55115fe52f0f 388 PRINTS PR00359 B-class P450 signature 331 340 1.5E-49 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_00725 fc83c6b775a076d2840a55115fe52f0f 388 PRINTS PR00359 B-class P450 signature 282 309 1.5E-49 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_00725 fc83c6b775a076d2840a55115fe52f0f 388 PRINTS PR00359 B-class P450 signature 310 325 1.5E-49 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_00725 fc83c6b775a076d2840a55115fe52f0f 388 PRINTS PR00359 B-class P450 signature 265 276 1.5E-49 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_00725 fc83c6b775a076d2840a55115fe52f0f 388 PRINTS PR00359 B-class P450 signature 340 351 1.5E-49 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_00725 fc83c6b775a076d2840a55115fe52f0f 388 PRINTS PR00359 B-class P450 signature 146 161 1.5E-49 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_00725 fc83c6b775a076d2840a55115fe52f0f 388 PRINTS PR00359 B-class P450 signature 129 145 1.5E-49 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_00725 fc83c6b775a076d2840a55115fe52f0f 388 PRINTS PR00359 B-class P450 signature 189 211 1.5E-49 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_00725 fc83c6b775a076d2840a55115fe52f0f 388 SUPERFAMILY SSF48264 6 388 1.7E-84 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_00725 fc83c6b775a076d2840a55115fe52f0f 388 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 333 342 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RAM_05760 debb63e5b46ec2e207758404dfabb416 1080 SUPERFAMILY SSF52540 22 788 1.35E-106 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_05760 debb63e5b46ec2e207758404dfabb416 1080 Gene3D G3DSA:3.40.50.300 410 509 8.0E-15 T 13-10-2018 RAM_05760 debb63e5b46ec2e207758404dfabb416 1080 Gene3D G3DSA:3.40.50.300 589 787 4.7E-26 T 13-10-2018 RAM_05760 debb63e5b46ec2e207758404dfabb416 1080 Pfam PF00580 UvrD/REP helicase N-terminal domain 25 344 4.4E-46 T 13-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 RAM_05760 debb63e5b46ec2e207758404dfabb416 1080 Gene3D G3DSA:3.40.50.300 237 379 3.4E-29 T 13-10-2018 RAM_05760 debb63e5b46ec2e207758404dfabb416 1080 Pfam PF12705 PD-(D/E)XK nuclease superfamily 962 1067 7.7E-11 T 13-10-2018 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type RAM_05760 debb63e5b46ec2e207758404dfabb416 1080 Gene3D G3DSA:3.40.50.300 19 201 1.6E-30 T 13-10-2018 RAM_05760 debb63e5b46ec2e207758404dfabb416 1080 SUPERFAMILY SSF52980 886 1051 1.34E-5 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 RAM_05760 debb63e5b46ec2e207758404dfabb416 1080 Pfam PF13361 UvrD-like helicase C-terminal domain 362 514 3.9E-9 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 RAM_05760 debb63e5b46ec2e207758404dfabb416 1080 Pfam PF13361 UvrD-like helicase C-terminal domain 608 763 1.9E-15 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 RAM_14670 1220b799d3c8a85d6126e83c4e95c965 382 Gene3D G3DSA:2.40.110.10 123 234 1.3E-39 T 13-10-2018 RAM_14670 1220b799d3c8a85d6126e83c4e95c965 382 Gene3D G3DSA:1.10.540.10 5 122 1.5E-33 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_14670 1220b799d3c8a85d6126e83c4e95c965 382 SUPERFAMILY SSF56645 3 239 1.13E-74 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_14670 1220b799d3c8a85d6126e83c4e95c965 382 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 230 378 3.7E-43 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_14670 1220b799d3c8a85d6126e83c4e95c965 382 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 337 356 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RAM_14670 1220b799d3c8a85d6126e83c4e95c965 382 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 120 2.8E-26 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_14670 1220b799d3c8a85d6126e83c4e95c965 382 Gene3D G3DSA:1.20.140.10 235 380 2.7E-43 T 13-10-2018 RAM_14670 1220b799d3c8a85d6126e83c4e95c965 382 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 124 217 1.1E-23 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RAM_14670 1220b799d3c8a85d6126e83c4e95c965 382 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 126 138 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RAM_14670 1220b799d3c8a85d6126e83c4e95c965 382 SUPERFAMILY SSF47203 229 378 7.41E-43 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_03485 f314d849b951e092e8fd853ed2610d1a 139 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 14 123 28.519 T 13-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_03485 f314d849b951e092e8fd853ed2610d1a 139 Gene3D G3DSA:3.90.470.10 11 138 8.3E-48 T 13-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 RAM_03485 f314d849b951e092e8fd853ed2610d1a 139 Pfam PF00237 Ribosomal protein L22p/L17e 18 120 3.1E-34 T 13-10-2018 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 RAM_03485 f314d849b951e092e8fd853ed2610d1a 139 SUPERFAMILY SSF54843 12 123 4.06E-41 T 13-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 RAM_03485 f314d849b951e092e8fd853ed2610d1a 139 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 18 120 9.5E-46 T 13-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_03485 f314d849b951e092e8fd853ed2610d1a 139 ProSitePatterns PS00464 Ribosomal protein L22 signature. 96 120 - T 13-10-2018 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_36805 5d0468fa894399ed1c216ad6983f95eb 386 Gene3D G3DSA:2.40.110.10 115 224 5.5E-36 T 13-10-2018 RAM_36805 5d0468fa894399ed1c216ad6983f95eb 386 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 221 373 2.1E-24 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_36805 5d0468fa894399ed1c216ad6983f95eb 386 Gene3D G3DSA:1.10.540.10 2 110 1.1E-28 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_36805 5d0468fa894399ed1c216ad6983f95eb 386 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 116 209 2.2E-22 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RAM_36805 5d0468fa894399ed1c216ad6983f95eb 386 SUPERFAMILY SSF56645 5 234 1.31E-69 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_36805 5d0468fa894399ed1c216ad6983f95eb 386 SUPERFAMILY SSF47203 221 375 6.12E-22 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_36805 5d0468fa894399ed1c216ad6983f95eb 386 Gene3D G3DSA:1.20.140.10 225 379 2.8E-35 T 13-10-2018 RAM_36805 5d0468fa894399ed1c216ad6983f95eb 386 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 4 111 8.3E-22 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_32100 cebc7bef9f587d2d348eb37264d64975 641 Gene3D G3DSA:3.30.450.330 279 620 1.2E-101 T 13-10-2018 RAM_32100 cebc7bef9f587d2d348eb37264d64975 641 Pfam PF00905 Penicillin binding protein transpeptidase domain 304 615 1.4E-81 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RAM_32100 cebc7bef9f587d2d348eb37264d64975 641 Pfam PF03717 Penicillin-binding Protein dimerisation domain 83 251 5.0E-10 T 13-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 RAM_32100 cebc7bef9f587d2d348eb37264d64975 641 SUPERFAMILY SSF56601 278 625 8.45E-87 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_32100 cebc7bef9f587d2d348eb37264d64975 641 Gene3D G3DSA:3.40.710.10 339 537 1.2E-101 T 13-10-2018 RAM_32100 cebc7bef9f587d2d348eb37264d64975 641 Gene3D G3DSA:3.90.1310.30 76 277 2.5E-24 T 13-10-2018 RAM_32100 cebc7bef9f587d2d348eb37264d64975 641 SUPERFAMILY SSF56519 80 277 4.05E-27 T 13-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 RAM_32425 18604959edcb70d98b4da25ed2743cbb 277 Gene3D G3DSA:3.30.2350.10 1 211 5.2E-82 T 13-10-2018 RAM_32425 18604959edcb70d98b4da25ed2743cbb 277 Gene3D G3DSA:2.30.130.10 212 274 1.7E-22 T 13-10-2018 IPR036974 PUA domain superfamily GO:0003723 RAM_32425 18604959edcb70d98b4da25ed2743cbb 277 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 164 205 1.9E-12 T 13-10-2018 IPR032819 tRNA pseudouridylate synthase B, C-terminal Reactome: R-HSA-171319|Reactome: R-HSA-6790901 RAM_32425 18604959edcb70d98b4da25ed2743cbb 277 SUPERFAMILY SSF88697 220 276 4.97E-12 T 13-10-2018 IPR015947 PUA-like superfamily RAM_32425 18604959edcb70d98b4da25ed2743cbb 277 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 11 163 3.0E-50 T 13-10-2018 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 RAM_32425 18604959edcb70d98b4da25ed2743cbb 277 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 1 274 14.037 T 13-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 RAM_32425 18604959edcb70d98b4da25ed2743cbb 277 Pfam PF09142 tRNA Pseudouridine synthase II, C terminal 220 274 7.1E-18 T 13-10-2018 IPR015225 tRNA pseudouridine synthase II, TruB, subfamily 2, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 RAM_32425 18604959edcb70d98b4da25ed2743cbb 277 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 1 202 5.2E-64 T 13-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 RAM_32425 18604959edcb70d98b4da25ed2743cbb 277 SUPERFAMILY SSF55120 1 208 1.09E-63 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 RAM_18800 c6cdbc4365a03e238c2a7b57a87bac4c 246 Gene3D G3DSA:3.10.180.10 2 119 1.5E-18 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_18800 c6cdbc4365a03e238c2a7b57a87bac4c 246 Gene3D G3DSA:3.10.180.10 129 239 3.9E-16 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_18800 c6cdbc4365a03e238c2a7b57a87bac4c 246 SUPERFAMILY SSF54593 130 231 5.5E-7 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_18800 c6cdbc4365a03e238c2a7b57a87bac4c 246 SUPERFAMILY SSF54593 4 118 1.55E-13 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_06655 4afa5486f7dbccd087a63a88b0e0c29a 385 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 249 345 3.0E-17 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RAM_06655 4afa5486f7dbccd087a63a88b0e0c29a 385 PIRSF PIRSF029347 1 385 4.1E-145 T 13-10-2018 IPR014555 RecF-like RAM_06655 4afa5486f7dbccd087a63a88b0e0c29a 385 Pfam PF13175 AAA ATPase domain 1 50 1.6E-10 T 13-10-2018 RAM_06655 4afa5486f7dbccd087a63a88b0e0c29a 385 Gene3D G3DSA:3.40.50.300 1 169 4.3E-12 T 13-10-2018 RAM_06655 4afa5486f7dbccd087a63a88b0e0c29a 385 Gene3D G3DSA:3.40.50.300 223 370 4.3E-9 T 13-10-2018 RAM_06655 4afa5486f7dbccd087a63a88b0e0c29a 385 SUPERFAMILY SSF52540 1 352 5.91E-23 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_21365 363708181d62f2a1cb251a768dc25e34 245 Gene3D G3DSA:3.30.450.40 16 183 1.3E-24 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_21365 363708181d62f2a1cb251a768dc25e34 245 SUPERFAMILY SSF55781 35 180 5.67E-24 T 13-10-2018 RAM_21365 363708181d62f2a1cb251a768dc25e34 245 Gene3D G3DSA:1.10.10.10 186 243 3.6E-7 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_21365 363708181d62f2a1cb251a768dc25e34 245 SMART SM00065 29 181 7.3E-7 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_21365 363708181d62f2a1cb251a768dc25e34 245 Pfam PF03861 ANTAR domain 187 238 4.7E-13 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 RAM_21365 363708181d62f2a1cb251a768dc25e34 245 PIRSF PIRSF036625 1 242 3.0E-38 T 13-10-2018 IPR012074 GAF-ANTAR transcription anti-termination regulator, putative RAM_21365 363708181d62f2a1cb251a768dc25e34 245 Pfam PF13185 GAF domain 33 171 4.5E-12 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_21365 363708181d62f2a1cb251a768dc25e34 245 SMART SM01012 183 238 3.9E-13 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 RAM_21365 363708181d62f2a1cb251a768dc25e34 245 SUPERFAMILY SSF52172 154 237 4.08E-7 T 13-10-2018 IPR011006 CheY-like superfamily RAM_39300 d8bf4da10e12902c3c92068ce89c73b1 167 Gene3D G3DSA:1.10.10.10 1 165 7.2E-56 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_39300 d8bf4da10e12902c3c92068ce89c73b1 167 Pfam PF01638 HxlR-like helix-turn-helix 19 105 4.3E-23 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type RAM_39300 d8bf4da10e12902c3c92068ce89c73b1 167 SUPERFAMILY SSF46785 5 144 5.04E-45 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_06165 496691a0dc85cd340c1dc3ff9d0acb54 573 ProSitePatterns PS00920 Nitrilases / cyanide hydratase signature 1. 36 51 - T 13-10-2018 IPR000132 Nitrilase/cyanide hydratase, conserved site GO:0016810 RAM_06165 496691a0dc85cd340c1dc3ff9d0acb54 573 Gene3D G3DSA:3.40.50.620 294 572 3.6E-106 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAM_06165 496691a0dc85cd340c1dc3ff9d0acb54 573 Hamap MF_02090 Glutamine-dependent NAD(+) synthetase [nadE]. 4 570 28.558 T 13-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 RAM_06165 496691a0dc85cd340c1dc3ff9d0acb54 573 SUPERFAMILY SSF56317 1 250 4.32E-61 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily RAM_06165 496691a0dc85cd340c1dc3ff9d0acb54 573 Pfam PF02540 NAD synthase 297 544 1.7E-68 T 13-10-2018 IPR022310 NAD/GMP synthase RAM_06165 496691a0dc85cd340c1dc3ff9d0acb54 573 TIGRFAM TIGR00552 nadE: NAD+ synthetase 304 550 3.8E-55 T 13-10-2018 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|Reactome: R-HSA-196807 RAM_06165 496691a0dc85cd340c1dc3ff9d0acb54 573 PIRSF PIRSF006630 1 572 1.3E-196 T 13-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 RAM_06165 496691a0dc85cd340c1dc3ff9d0acb54 573 Gene3D G3DSA:3.60.110.10 2 291 4.5E-98 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily RAM_06165 496691a0dc85cd340c1dc3ff9d0acb54 573 Pfam PF00795 Carbon-nitrogen hydrolase 5 252 3.6E-30 T 13-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 RAM_06165 496691a0dc85cd340c1dc3ff9d0acb54 573 SUPERFAMILY SSF52402 289 552 2.96E-71 T 13-10-2018 RAM_11780 56aef31e2f43faa6585cc56aaa8491fe 414 Pfam PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain 6 223 3.3E-36 T 13-10-2018 IPR004255 O-acyltransferase, WSD1, N-terminal GO:0004144|GO:0045017 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20 RAM_11780 56aef31e2f43faa6585cc56aaa8491fe 414 Pfam PF06974 Protein of unknown function (DUF1298) 265 406 4.0E-22 T 13-10-2018 IPR009721 O-acyltransferase WSD1, C-terminal GO:0004144 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20 RAM_11780 56aef31e2f43faa6585cc56aaa8491fe 414 SUPERFAMILY SSF52777 184 393 7.0E-5 T 13-10-2018 RAM_11780 56aef31e2f43faa6585cc56aaa8491fe 414 Gene3D G3DSA:3.30.559.10 5 162 4.7E-9 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_11780 56aef31e2f43faa6585cc56aaa8491fe 414 Gene3D G3DSA:3.30.559.30 166 233 4.7E-9 T 13-10-2018 RAM_11780 56aef31e2f43faa6585cc56aaa8491fe 414 TIGRFAM TIGR02946 acyl_WS_DGAT: acyltransferase, WS/DGAT/MGAT 6 413 2.7E-100 T 13-10-2018 IPR014292 Acyltransferase, WS/DGAT/MGAT GO:0016746|GO:0045017 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20 RAM_11780 56aef31e2f43faa6585cc56aaa8491fe 414 SUPERFAMILY SSF52777 5 154 6.78E-12 T 13-10-2018 RAM_03820 2262af2cc20637c9d0216ef3b5d6d547 348 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 274 283 1.0E-51 T 13-10-2018 IPR017861 Kae1/TsaD family RAM_03820 2262af2cc20637c9d0216ef3b5d6d547 348 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 82 102 1.0E-51 T 13-10-2018 IPR017861 Kae1/TsaD family RAM_03820 2262af2cc20637c9d0216ef3b5d6d547 348 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 103 122 1.0E-51 T 13-10-2018 IPR017861 Kae1/TsaD family RAM_03820 2262af2cc20637c9d0216ef3b5d6d547 348 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 6 19 1.0E-51 T 13-10-2018 IPR017861 Kae1/TsaD family RAM_03820 2262af2cc20637c9d0216ef3b5d6d547 348 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 137 149 1.0E-51 T 13-10-2018 IPR017861 Kae1/TsaD family RAM_03820 2262af2cc20637c9d0216ef3b5d6d547 348 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 161 182 1.0E-51 T 13-10-2018 IPR017861 Kae1/TsaD family RAM_03820 2262af2cc20637c9d0216ef3b5d6d547 348 Pfam PF00814 Glycoprotease family 29 317 2.5E-96 T 13-10-2018 IPR000905 Gcp-like domain RAM_03820 2262af2cc20637c9d0216ef3b5d6d547 348 ProSitePatterns PS01016 Glycoprotease family signature. 102 122 - T 13-10-2018 IPR017860 Peptidase M22, conserved site Reactome: R-HSA-6782315 RAM_03820 2262af2cc20637c9d0216ef3b5d6d547 348 Gene3D G3DSA:3.30.420.40 135 304 9.6E-115 T 13-10-2018 RAM_03820 2262af2cc20637c9d0216ef3b5d6d547 348 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 5 323 1.8E-125 T 13-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 RAM_03820 2262af2cc20637c9d0216ef3b5d6d547 348 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 6 317 6.7E-96 T 13-10-2018 IPR017861 Kae1/TsaD family RAM_03820 2262af2cc20637c9d0216ef3b5d6d547 348 SUPERFAMILY SSF53067 4 319 3.33E-37 T 13-10-2018 RAM_03820 2262af2cc20637c9d0216ef3b5d6d547 348 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 3 343 61.236 T 13-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 RAM_03820 2262af2cc20637c9d0216ef3b5d6d547 348 Gene3D G3DSA:3.30.420.40 5 324 9.6E-115 T 13-10-2018 RAM_11740 5f9fd61bab73fb216318dc173a226ec6 1517 Gene3D G3DSA:3.20.20.70 806 1233 1.2E-187 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_11740 5f9fd61bab73fb216318dc173a226ec6 1517 Pfam PF01645 Conserved region in glutamate synthase 821 1185 3.0E-151 T 13-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 RAM_11740 5f9fd61bab73fb216318dc173a226ec6 1517 Pfam PF00310 Glutamine amidotransferases class-II 22 442 2.7E-171 T 13-10-2018 IPR017932 Glutamine amidotransferase type 2 domain RAM_11740 5f9fd61bab73fb216318dc173a226ec6 1517 Gene3D G3DSA:3.60.20.10 22 449 1.0E-171 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RAM_11740 5f9fd61bab73fb216318dc173a226ec6 1517 SUPERFAMILY SSF69336 1235 1495 1.7E-88 T 13-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 RAM_11740 5f9fd61bab73fb216318dc173a226ec6 1517 Pfam PF04898 Glutamate synthase central domain 469 756 1.8E-108 T 13-10-2018 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 RAM_11740 5f9fd61bab73fb216318dc173a226ec6 1517 Pfam PF01493 GXGXG motif 1266 1443 3.0E-77 T 13-10-2018 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0016491|GO:0055114 RAM_11740 5f9fd61bab73fb216318dc173a226ec6 1517 SUPERFAMILY SSF56235 22 444 1.54E-143 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RAM_11740 5f9fd61bab73fb216318dc173a226ec6 1517 SUPERFAMILY SSF51395 457 1220 9.77E-259 T 13-10-2018 RAM_11740 5f9fd61bab73fb216318dc173a226ec6 1517 Gene3D G3DSA:3.20.20.70 450 805 8.3E-131 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_11740 5f9fd61bab73fb216318dc173a226ec6 1517 Gene3D G3DSA:2.160.20.60 1238 1506 5.0E-105 T 13-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 RAM_37255 1729f0ca977baf9b1399fed1511dcd4d 156 SUPERFAMILY SSF143744 12 150 6.41E-22 T 13-10-2018 IPR038084 GlcG-like domain superfamily RAM_37255 1729f0ca977baf9b1399fed1511dcd4d 156 Pfam PF03928 Haem-degrading 20 146 5.0E-27 T 13-10-2018 IPR005624 Haem-degrading RAM_37255 1729f0ca977baf9b1399fed1511dcd4d 156 Gene3D G3DSA:3.30.450.150 1 154 2.4E-42 T 13-10-2018 IPR038084 GlcG-like domain superfamily RAM_20390 bd1d795f3bf70acaffa0e0c6cfa9485d 467 ProSitePatterns PS00216 Sugar transport proteins signature 1. 313 330 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RAM_20390 bd1d795f3bf70acaffa0e0c6cfa9485d 467 SUPERFAMILY SSF103473 22 442 7.32E-55 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_20390 bd1d795f3bf70acaffa0e0c6cfa9485d 467 ProSitePatterns PS00217 Sugar transport proteins signature 2. 138 163 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RAM_20390 bd1d795f3bf70acaffa0e0c6cfa9485d 467 Gene3D G3DSA:1.20.1250.20 25 447 3.4E-60 T 13-10-2018 RAM_20390 bd1d795f3bf70acaffa0e0c6cfa9485d 467 Pfam PF00083 Sugar (and other) transporter 33 440 3.6E-29 T 13-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 RAM_30410 f5f30222df32b5c81940966280e93bbc 325 Pfam PF00005 ABC transporter 25 168 1.2E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_30410 f5f30222df32b5c81940966280e93bbc 325 SUPERFAMILY SSF52540 8 230 1.01E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_30410 f5f30222df32b5c81940966280e93bbc 325 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_30410 f5f30222df32b5c81940966280e93bbc 325 Gene3D G3DSA:3.40.50.300 3 246 4.7E-69 T 13-10-2018 RAM_30410 f5f30222df32b5c81940966280e93bbc 325 SMART SM00382 34 217 3.9E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_30410 f5f30222df32b5c81940966280e93bbc 325 Pfam PF13732 Domain of unknown function (DUF4162) 222 312 7.8E-8 T 13-10-2018 IPR025302 Domain of unknown function DUF4162 RAM_30410 f5f30222df32b5c81940966280e93bbc 325 TIGRFAM TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein 17 314 2.1E-108 T 13-10-2018 IPR005894 Daunorubicin resistance ABC transporter ATP-binding subunit DrrA GO:0005524|GO:0043215|GO:1900753 RAM_09030 11ac13c7a40ead6d975d14733aa1f03c 424 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 16 296 2.9E-52 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_09030 11ac13c7a40ead6d975d14733aa1f03c 424 Pfam PF11887 Cholesterol uptake porter CUP1 of Mce4, putative 148 413 2.2E-68 T 13-10-2018 IPR024516 Mammalian cell entry, C-terminal RAM_09030 11ac13c7a40ead6d975d14733aa1f03c 424 Pfam PF02470 MlaD protein 41 116 1.7E-8 T 13-10-2018 IPR003399 Mce/MlaD RAM_20420 7804ad2914ee661ec2c3db8033014428 386 Gene3D G3DSA:1.10.10.2840 255 384 2.0E-20 T 13-10-2018 RAM_20420 7804ad2914ee661ec2c3db8033014428 386 Pfam PF13556 PucR C-terminal helix-turn-helix domain 321 379 1.7E-16 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain RAM_29945 e6dc45a548219f09a6c0a1e24016823b 322 Pfam PF01545 Cation efflux family 36 227 2.3E-38 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RAM_29945 e6dc45a548219f09a6c0a1e24016823b 322 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 32 308 1.0E-63 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RAM_29945 e6dc45a548219f09a6c0a1e24016823b 322 Gene3D G3DSA:1.20.1510.10 31 227 2.2E-43 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily RAM_29945 e6dc45a548219f09a6c0a1e24016823b 322 SUPERFAMILY SSF160240 229 308 1.83E-16 T 13-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 RAM_29945 e6dc45a548219f09a6c0a1e24016823b 322 SUPERFAMILY SSF161111 28 228 1.27E-46 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily RAM_29945 e6dc45a548219f09a6c0a1e24016823b 322 Gene3D G3DSA:3.30.70.1350 233 308 2.4E-16 T 13-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 RAM_29945 e6dc45a548219f09a6c0a1e24016823b 322 Pfam PF16916 Dimerisation domain of Zinc Transporter 232 308 3.4E-16 T 13-10-2018 IPR027470 Cation efflux protein, cytoplasmic domain RAM_11725 3016640af0346383d5bbeb33693a5b27 390 Gene3D G3DSA:3.40.630.10 20 368 7.4E-88 T 13-10-2018 RAM_11725 3016640af0346383d5bbeb33693a5b27 390 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 20 365 9.1E-65 T 13-10-2018 IPR017439 Amidohydrolase GO:0016787 RAM_11725 3016640af0346383d5bbeb33693a5b27 390 SUPERFAMILY SSF53187 8 381 1.71E-42 T 13-10-2018 RAM_11725 3016640af0346383d5bbeb33693a5b27 390 Pfam PF01546 Peptidase family M20/M25/M40 74 367 2.4E-18 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 RAM_11725 3016640af0346383d5bbeb33693a5b27 390 Gene3D G3DSA:3.30.70.360 182 296 7.4E-88 T 13-10-2018 RAM_11725 3016640af0346383d5bbeb33693a5b27 390 Pfam PF07687 Peptidase dimerisation domain 186 279 8.6E-16 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain RAM_11725 3016640af0346383d5bbeb33693a5b27 390 SUPERFAMILY SSF55031 184 294 2.69E-28 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain RAM_39655 8f361899a44540eeafdcbb60f78db0f9 433 SUPERFAMILY SSF54675 10 140 2.5E-41 T 13-10-2018 RAM_39655 8f361899a44540eeafdcbb60f78db0f9 433 Gene3D G3DSA:3.20.20.70 154 313 4.6E-103 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_39655 8f361899a44540eeafdcbb60f78db0f9 433 Gene3D G3DSA:3.20.140.10 13 367 4.6E-103 T 13-10-2018 RAM_39655 8f361899a44540eeafdcbb60f78db0f9 433 SUPERFAMILY SSF51690 142 430 8.37E-85 T 13-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 RAM_39655 8f361899a44540eeafdcbb60f78db0f9 433 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 142 311 3.1E-7 T 13-10-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 Reactome: R-HSA-196807 RAM_39655 8f361899a44540eeafdcbb60f78db0f9 433 TIGRFAM TIGR01513 NAPRTase_put: nicotinate phosphoribosyltransferase 12 423 3.3E-133 T 13-10-2018 IPR006405 Nicotinate phosphoribosyltransferase pncB-type GO:0004516|GO:0019358 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264|Reactome: R-HSA-6798695 RAM_39655 8f361899a44540eeafdcbb60f78db0f9 433 PIRSF PIRSF000484 6 428 5.2E-101 T 13-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 RAM_38780 a6b4dc5386dd3c68b831ff0fb3711366 458 Gene3D G3DSA:2.40.10.120 123 361 8.2E-48 T 13-10-2018 RAM_38780 a6b4dc5386dd3c68b831ff0fb3711366 458 PRINTS PR00834 HtrA/DegQ protease family signature 292 309 5.2E-24 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAM_38780 a6b4dc5386dd3c68b831ff0fb3711366 458 PRINTS PR00834 HtrA/DegQ protease family signature 400 412 5.2E-24 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAM_38780 a6b4dc5386dd3c68b831ff0fb3711366 458 PRINTS PR00834 HtrA/DegQ protease family signature 314 331 5.2E-24 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAM_38780 a6b4dc5386dd3c68b831ff0fb3711366 458 PRINTS PR00834 HtrA/DegQ protease family signature 185 197 5.2E-24 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAM_38780 a6b4dc5386dd3c68b831ff0fb3711366 458 PRINTS PR00834 HtrA/DegQ protease family signature 207 227 5.2E-24 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAM_38780 a6b4dc5386dd3c68b831ff0fb3711366 458 PRINTS PR00834 HtrA/DegQ protease family signature 248 272 5.2E-24 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAM_38780 a6b4dc5386dd3c68b831ff0fb3711366 458 Pfam PF13365 Trypsin-like peptidase domain 176 321 1.4E-22 T 13-10-2018 RAM_38780 a6b4dc5386dd3c68b831ff0fb3711366 458 SMART SM00228 372 442 3.0E-12 T 13-10-2018 IPR001478 PDZ domain GO:0005515 RAM_38780 a6b4dc5386dd3c68b831ff0fb3711366 458 Gene3D G3DSA:2.30.42.10 370 454 9.8E-20 T 13-10-2018 RAM_38780 a6b4dc5386dd3c68b831ff0fb3711366 458 Pfam PF13180 PDZ domain 372 439 5.1E-16 T 13-10-2018 IPR001478 PDZ domain GO:0005515 RAM_38780 a6b4dc5386dd3c68b831ff0fb3711366 458 ProSitePatterns PS00135 Serine proteases, trypsin family, serine active site. 301 312 - T 13-10-2018 IPR033116 Serine proteases, trypsin family, serine active site RAM_38780 a6b4dc5386dd3c68b831ff0fb3711366 458 SUPERFAMILY SSF50494 147 356 4.09E-38 T 13-10-2018 IPR009003 Peptidase S1, PA clan RAM_38780 a6b4dc5386dd3c68b831ff0fb3711366 458 SUPERFAMILY SSF50156 383 450 2.1E-15 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 RAM_39430 9eb7aeed88bfba0faade90605a28e1ff 215 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 3 14 1.9E-7 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_39430 9eb7aeed88bfba0faade90605a28e1ff 215 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 146 166 1.9E-7 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_39430 9eb7aeed88bfba0faade90605a28e1ff 215 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 173 186 1.9E-7 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_39430 9eb7aeed88bfba0faade90605a28e1ff 215 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 98 111 1.9E-7 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_39430 9eb7aeed88bfba0faade90605a28e1ff 215 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 128 144 1.9E-7 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_39430 9eb7aeed88bfba0faade90605a28e1ff 215 SUPERFAMILY SSF56784 3 206 4.14E-49 T 13-10-2018 IPR036412 HAD-like superfamily RAM_39430 9eb7aeed88bfba0faade90605a28e1ff 215 Gene3D G3DSA:3.40.50.1000 4 202 6.2E-51 T 13-10-2018 IPR023214 HAD superfamily RAM_39430 9eb7aeed88bfba0faade90605a28e1ff 215 Pfam PF13419 Haloacid dehalogenase-like hydrolase 6 184 5.0E-34 T 13-10-2018 RAM_39430 9eb7aeed88bfba0faade90605a28e1ff 215 Gene3D G3DSA:1.10.150.240 16 85 6.2E-51 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 RAM_39430 9eb7aeed88bfba0faade90605a28e1ff 215 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 84 184 6.7E-18 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_23975 74bb16a053b0fbe302c84905ee64c2bd 403 Gene3D G3DSA:3.30.9.50 38 268 3.9E-63 T 13-10-2018 RAM_23975 74bb16a053b0fbe302c84905ee64c2bd 403 SUPERFAMILY SSF51905 1 368 1.23E-42 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_23975 74bb16a053b0fbe302c84905ee64c2bd 403 Pfam PF01494 FAD binding domain 3 329 3.3E-10 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_23975 74bb16a053b0fbe302c84905ee64c2bd 403 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 278 293 8.7E-12 T 13-10-2018 RAM_23975 74bb16a053b0fbe302c84905ee64c2bd 403 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 293 309 8.7E-12 T 13-10-2018 RAM_23975 74bb16a053b0fbe302c84905ee64c2bd 403 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 2 24 8.7E-12 T 13-10-2018 RAM_23975 74bb16a053b0fbe302c84905ee64c2bd 403 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 144 159 8.7E-12 T 13-10-2018 RAM_23975 74bb16a053b0fbe302c84905ee64c2bd 403 Gene3D G3DSA:3.50.50.60 5 337 3.9E-63 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_20665 e97f71205b400e54801f2e3e39449388 259 SUPERFAMILY SSF56655 3 257 3.27E-49 T 13-10-2018 RAM_20665 e97f71205b400e54801f2e3e39449388 259 Gene3D G3DSA:3.30.540.10 1 139 3.0E-22 T 13-10-2018 RAM_20665 e97f71205b400e54801f2e3e39449388 259 Gene3D G3DSA:3.40.190.80 140 259 4.5E-22 T 13-10-2018 RAM_20665 e97f71205b400e54801f2e3e39449388 259 PRINTS PR00377 Inositol monophosphatase superfamily signature 178 199 2.6E-20 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RAM_20665 e97f71205b400e54801f2e3e39449388 259 PRINTS PR00377 Inositol monophosphatase superfamily signature 208 232 2.6E-20 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RAM_20665 e97f71205b400e54801f2e3e39449388 259 PRINTS PR00377 Inositol monophosphatase superfamily signature 80 96 2.6E-20 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RAM_20665 e97f71205b400e54801f2e3e39449388 259 PRINTS PR00377 Inositol monophosphatase superfamily signature 129 152 2.6E-20 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RAM_20665 e97f71205b400e54801f2e3e39449388 259 Pfam PF00459 Inositol monophosphatase family 6 252 2.4E-33 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RAM_32755 07677d4a465026f31d1085f74e9a7c9f 998 Pfam PF00486 Transcriptional regulatory protein, C terminal 22 77 4.2E-10 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_32755 07677d4a465026f31d1085f74e9a7c9f 998 Pfam PF03704 Bacterial transcriptional activator domain 96 240 3.0E-44 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_32755 07677d4a465026f31d1085f74e9a7c9f 998 Gene3D G3DSA:1.25.40.10 867 983 5.7E-10 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_32755 07677d4a465026f31d1085f74e9a7c9f 998 Gene3D G3DSA:1.10.10.10 1 92 1.4E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_32755 07677d4a465026f31d1085f74e9a7c9f 998 SUPERFAMILY SSF48452 91 260 1.14E-34 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_32755 07677d4a465026f31d1085f74e9a7c9f 998 Gene3D G3DSA:1.25.40.10 94 254 5.1E-47 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_32755 07677d4a465026f31d1085f74e9a7c9f 998 SMART SM00028 743 776 130.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_32755 07677d4a465026f31d1085f74e9a7c9f 998 SMART SM00028 703 736 0.0053 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_32755 07677d4a465026f31d1085f74e9a7c9f 998 SMART SM00028 823 856 120.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_32755 07677d4a465026f31d1085f74e9a7c9f 998 SMART SM00028 783 816 40.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_32755 07677d4a465026f31d1085f74e9a7c9f 998 SMART SM00028 943 976 250.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_32755 07677d4a465026f31d1085f74e9a7c9f 998 SMART SM00028 190 223 320.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_32755 07677d4a465026f31d1085f74e9a7c9f 998 SMART SM00862 15 89 7.1E-12 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_32755 07677d4a465026f31d1085f74e9a7c9f 998 Gene3D G3DSA:1.25.40.10 645 857 6.6E-30 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_32755 07677d4a465026f31d1085f74e9a7c9f 998 Pfam PF13424 Tetratricopeptide repeat 705 774 1.7E-12 T 13-10-2018 RAM_32755 07677d4a465026f31d1085f74e9a7c9f 998 PRINTS PR00364 Disease resistance protein signature 366 380 1.0E-9 T 13-10-2018 RAM_32755 07677d4a465026f31d1085f74e9a7c9f 998 PRINTS PR00364 Disease resistance protein signature 289 304 1.0E-9 T 13-10-2018 RAM_32755 07677d4a465026f31d1085f74e9a7c9f 998 PRINTS PR00364 Disease resistance protein signature 450 464 1.0E-9 T 13-10-2018 RAM_32755 07677d4a465026f31d1085f74e9a7c9f 998 Pfam PF00931 NB-ARC domain 271 509 4.9E-15 T 13-10-2018 IPR002182 NB-ARC GO:0043531 Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-6798695|Reactome: R-HSA-6803207|Reactome: R-HSA-8953750 RAM_32755 07677d4a465026f31d1085f74e9a7c9f 998 Gene3D G3DSA:1.10.8.430 418 489 1.8E-5 T 13-10-2018 RAM_32755 07677d4a465026f31d1085f74e9a7c9f 998 SUPERFAMILY SSF48452 801 972 8.1E-17 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_32755 07677d4a465026f31d1085f74e9a7c9f 998 SUPERFAMILY SSF48452 693 821 8.85E-16 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_32755 07677d4a465026f31d1085f74e9a7c9f 998 SUPERFAMILY SSF46894 2 89 3.4E-15 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_32755 07677d4a465026f31d1085f74e9a7c9f 998 Gene3D G3DSA:3.40.50.300 255 411 4.7E-30 T 13-10-2018 RAM_32755 07677d4a465026f31d1085f74e9a7c9f 998 SUPERFAMILY SSF52540 255 515 4.46E-31 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_32755 07677d4a465026f31d1085f74e9a7c9f 998 SMART SM01043 96 240 3.7E-50 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_07740 974ba37656321817920b9111e2fc4bd6 415 Pfam PF07470 Glycosyl Hydrolase Family 88 82 360 4.4E-22 T 13-10-2018 IPR010905 Glycosyl hydrolase, family 88 RAM_07740 974ba37656321817920b9111e2fc4bd6 415 SUPERFAMILY SSF48208 70 404 6.8E-103 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_07740 974ba37656321817920b9111e2fc4bd6 415 Gene3D G3DSA:1.50.10.10 46 407 1.8E-120 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 RAM_06890 0b65bcb2d100e2cd6b11a567e4123c02 252 Pfam PF07819 PGAP1-like protein 79 143 1.3E-6 T 13-10-2018 IPR012908 GPI inositol-deacylase PGAP1-like GO:0016788 Reactome: R-HSA-162791 RAM_06890 0b65bcb2d100e2cd6b11a567e4123c02 252 SUPERFAMILY SSF53474 33 234 8.59E-19 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_06890 0b65bcb2d100e2cd6b11a567e4123c02 252 Gene3D G3DSA:3.40.50.1820 17 250 5.0E-53 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_37300 57a1055444859246966d28c61491adab 263 SUPERFAMILY SSF53474 18 259 1.63E-50 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_37300 57a1055444859246966d28c61491adab 263 Gene3D G3DSA:3.40.50.1820 8 260 8.7E-53 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_37300 57a1055444859246966d28c61491adab 263 Pfam PF12697 Alpha/beta hydrolase family 26 253 3.0E-16 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_24020 fec70f1592ff8f7ce81444f2ca323bbf 148 SUPERFAMILY SSF55961 1 142 9.49E-29 T 13-10-2018 RAM_24020 fec70f1592ff8f7ce81444f2ca323bbf 148 Gene3D G3DSA:3.30.530.20 1 146 1.8E-32 T 13-10-2018 IPR023393 START-like domain superfamily RAM_24020 fec70f1592ff8f7ce81444f2ca323bbf 148 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 13 141 5.8E-17 T 13-10-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like RAM_14815 b568efcf4b7520fa4d3818df3bb9fb6b 1269 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 775 789 - T 13-10-2018 IPR019775 WD40 repeat, conserved site RAM_14815 b568efcf4b7520fa4d3818df3bb9fb6b 1269 SUPERFAMILY SSF101908 956 1246 1.83E-45 T 13-10-2018 RAM_14815 b568efcf4b7520fa4d3818df3bb9fb6b 1269 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 960 974 - T 13-10-2018 IPR019775 WD40 repeat, conserved site RAM_14815 b568efcf4b7520fa4d3818df3bb9fb6b 1269 SMART SM00320 976 1015 0.33 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_14815 b568efcf4b7520fa4d3818df3bb9fb6b 1269 SMART SM00320 612 656 470.0 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_14815 b568efcf4b7520fa4d3818df3bb9fb6b 1269 SMART SM00320 711 746 2.2 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_14815 b568efcf4b7520fa4d3818df3bb9fb6b 1269 SMART SM00320 1196 1234 2.5 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_14815 b568efcf4b7520fa4d3818df3bb9fb6b 1269 SMART SM00320 749 788 9.5E-8 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_14815 b568efcf4b7520fa4d3818df3bb9fb6b 1269 SMART SM00320 1108 1147 1.3E-5 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_14815 b568efcf4b7520fa4d3818df3bb9fb6b 1269 SMART SM00320 661 698 310.0 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_14815 b568efcf4b7520fa4d3818df3bb9fb6b 1269 SMART SM00320 917 973 8.6E-5 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_14815 b568efcf4b7520fa4d3818df3bb9fb6b 1269 SMART SM00320 833 872 0.0086 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_14815 b568efcf4b7520fa4d3818df3bb9fb6b 1269 SMART SM00320 791 830 2.8E-8 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_14815 b568efcf4b7520fa4d3818df3bb9fb6b 1269 SMART SM00320 875 914 1.6E-6 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_14815 b568efcf4b7520fa4d3818df3bb9fb6b 1269 SMART SM00320 1154 1193 0.0026 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_14815 b568efcf4b7520fa4d3818df3bb9fb6b 1269 PRINTS PR00320 G protein beta WD-40 repeat signature 775 789 5.6E-6 T 13-10-2018 IPR020472 G-protein beta WD-40 repeat RAM_14815 b568efcf4b7520fa4d3818df3bb9fb6b 1269 PRINTS PR00320 G protein beta WD-40 repeat signature 859 873 5.6E-6 T 13-10-2018 IPR020472 G-protein beta WD-40 repeat RAM_14815 b568efcf4b7520fa4d3818df3bb9fb6b 1269 PRINTS PR00320 G protein beta WD-40 repeat signature 960 974 5.6E-6 T 13-10-2018 IPR020472 G-protein beta WD-40 repeat RAM_14815 b568efcf4b7520fa4d3818df3bb9fb6b 1269 SUPERFAMILY SSF69322 615 700 1.29E-9 T 13-10-2018 RAM_14815 b568efcf4b7520fa4d3818df3bb9fb6b 1269 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 901 915 - T 13-10-2018 IPR019775 WD40 repeat, conserved site RAM_14815 b568efcf4b7520fa4d3818df3bb9fb6b 1269 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1134 1148 - T 13-10-2018 IPR019775 WD40 repeat, conserved site RAM_14815 b568efcf4b7520fa4d3818df3bb9fb6b 1269 Gene3D G3DSA:2.130.10.10 1077 1235 2.8E-31 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RAM_14815 b568efcf4b7520fa4d3818df3bb9fb6b 1269 Gene3D G3DSA:2.130.10.10 604 715 3.7E-6 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RAM_14815 b568efcf4b7520fa4d3818df3bb9fb6b 1269 Gene3D G3DSA:2.130.10.10 716 838 1.1E-34 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RAM_14815 b568efcf4b7520fa4d3818df3bb9fb6b 1269 Gene3D G3DSA:2.130.10.10 937 1076 7.8E-21 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RAM_14815 b568efcf4b7520fa4d3818df3bb9fb6b 1269 SUPERFAMILY SSF50978 724 1019 1.65E-65 T 13-10-2018 IPR036322 WD40-repeat-containing domain superfamily GO:0005515 RAM_14815 b568efcf4b7520fa4d3818df3bb9fb6b 1269 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 859 873 - T 13-10-2018 IPR019775 WD40 repeat, conserved site RAM_14815 b568efcf4b7520fa4d3818df3bb9fb6b 1269 Pfam PF00400 WD domain, G-beta repeat 881 914 3.0E-5 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_14815 b568efcf4b7520fa4d3818df3bb9fb6b 1269 Pfam PF00400 WD domain, G-beta repeat 797 828 9.1E-6 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_14815 b568efcf4b7520fa4d3818df3bb9fb6b 1269 Pfam PF00400 WD domain, G-beta repeat 1207 1233 0.085 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_14815 b568efcf4b7520fa4d3818df3bb9fb6b 1269 Pfam PF00400 WD domain, G-beta repeat 755 788 4.4E-7 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_14815 b568efcf4b7520fa4d3818df3bb9fb6b 1269 Pfam PF00400 WD domain, G-beta repeat 1115 1147 2.2E-5 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_14815 b568efcf4b7520fa4d3818df3bb9fb6b 1269 Pfam PF00400 WD domain, G-beta repeat 724 746 0.11 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_14815 b568efcf4b7520fa4d3818df3bb9fb6b 1269 Pfam PF00400 WD domain, G-beta repeat 946 973 1.1E-4 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_14815 b568efcf4b7520fa4d3818df3bb9fb6b 1269 Pfam PF00400 WD domain, G-beta repeat 845 872 0.032 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_14815 b568efcf4b7520fa4d3818df3bb9fb6b 1269 Gene3D G3DSA:3.40.50.300 97 162 6.4E-6 T 13-10-2018 RAM_14815 b568efcf4b7520fa4d3818df3bb9fb6b 1269 SUPERFAMILY SSF52540 102 342 9.09E-15 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_14815 b568efcf4b7520fa4d3818df3bb9fb6b 1269 Gene3D G3DSA:2.130.10.10 839 936 2.3E-20 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RAM_02685 a31c2177af4c8f6d58a189607d034b2f 285 Gene3D G3DSA:1.10.10.1590 48 118 3.3E-22 T 13-10-2018 RAM_02685 a31c2177af4c8f6d58a189607d034b2f 285 Gene3D G3DSA:3.40.30.10 119 227 2.8E-22 T 13-10-2018 RAM_02685 a31c2177af4c8f6d58a189607d034b2f 285 SUPERFAMILY SSF52833 49 217 2.57E-43 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RAM_02685 a31c2177af4c8f6d58a189607d034b2f 285 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 58 209 3.7E-45 T 13-10-2018 RAM_23800 26f9542f98f6471956e759761dbb6777 207 Gene3D G3DSA:1.10.357.10 58 202 2.7E-32 T 13-10-2018 RAM_23800 26f9542f98f6471956e759761dbb6777 207 SUPERFAMILY SSF46689 8 78 1.8E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_23800 26f9542f98f6471956e759761dbb6777 207 Gene3D G3DSA:1.10.10.60 7 56 3.1E-20 T 13-10-2018 RAM_23800 26f9542f98f6471956e759761dbb6777 207 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 60 8.6E-12 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_45335 f0d31d387ae5a32ac79b7f92556dd67e 353 Gene3D G3DSA:3.10.150.10 115 230 9.5E-17 T 13-10-2018 RAM_45335 f0d31d387ae5a32ac79b7f92556dd67e 353 Gene3D G3DSA:3.10.150.10 235 352 8.3E-22 T 13-10-2018 RAM_45335 f0d31d387ae5a32ac79b7f92556dd67e 353 SUPERFAMILY SSF55979 237 350 6.28E-17 T 13-10-2018 RAM_45335 f0d31d387ae5a32ac79b7f92556dd67e 353 SUPERFAMILY SSF55979 1 104 6.8E-10 T 13-10-2018 RAM_45335 f0d31d387ae5a32ac79b7f92556dd67e 353 SMART SM00480 10 348 1.3E-15 T 13-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 RAM_45335 f0d31d387ae5a32ac79b7f92556dd67e 353 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 238 350 1.6E-18 T 13-10-2018 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 RAM_45335 f0d31d387ae5a32ac79b7f92556dd67e 353 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 21 104 1.5E-8 T 13-10-2018 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 RAM_45335 f0d31d387ae5a32ac79b7f92556dd67e 353 SUPERFAMILY SSF55979 119 194 3.98E-11 T 13-10-2018 RAM_45335 f0d31d387ae5a32ac79b7f92556dd67e 353 Pfam PF02767 DNA polymerase III beta subunit, central domain 119 226 2.2E-12 T 13-10-2018 IPR022637 DNA polymerase III, beta sliding clamp, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 RAM_45335 f0d31d387ae5a32ac79b7f92556dd67e 353 Gene3D G3DSA:3.10.150.10 1 107 2.7E-14 T 13-10-2018 RAM_06515 8d0d230f01334f4222905ea7041b39df 797 SUPERFAMILY SSF52540 18 333 6.81E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_06515 8d0d230f01334f4222905ea7041b39df 797 Pfam PF04408 Helicase associated domain (HA2) 386 457 5.6E-11 T 13-10-2018 IPR007502 Helicase-associated domain GO:0004386 RAM_06515 8d0d230f01334f4222905ea7041b39df 797 Gene3D G3DSA:3.40.50.300 2 179 8.9E-51 T 13-10-2018 RAM_06515 8d0d230f01334f4222905ea7041b39df 797 SMART SM00487 4 186 1.1E-16 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RAM_06515 8d0d230f01334f4222905ea7041b39df 797 SMART SM00847 383 473 7.2E-8 T 13-10-2018 IPR007502 Helicase-associated domain GO:0004386 RAM_06515 8d0d230f01334f4222905ea7041b39df 797 Pfam PF08482 ATP-dependent helicase C-terminal 661 784 4.0E-47 T 13-10-2018 IPR013689 ATP-dependent RNA helicase HrpB, C-terminal RAM_06515 8d0d230f01334f4222905ea7041b39df 797 TIGRFAM TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB 6 796 2.6E-232 T 13-10-2018 IPR010225 ATP-dependent helicase HrpB GO:0008026 RAM_06515 8d0d230f01334f4222905ea7041b39df 797 Pfam PF00271 Helicase conserved C-terminal domain 208 321 1.5E-9 T 13-10-2018 IPR001650 Helicase, C-terminal RAM_06515 8d0d230f01334f4222905ea7041b39df 797 Gene3D G3DSA:3.40.50.300 180 340 5.3E-44 T 13-10-2018 RAM_06515 8d0d230f01334f4222905ea7041b39df 797 PIRSF PIRSF005496 1 797 3.5E-265 T 13-10-2018 RAM_06515 8d0d230f01334f4222905ea7041b39df 797 SMART SM00490 226 323 8.7E-13 T 13-10-2018 IPR001650 Helicase, C-terminal RAM_06515 8d0d230f01334f4222905ea7041b39df 797 Gene3D G3DSA:1.20.120.1080 370 465 1.2E-7 T 13-10-2018 RAM_33795 3b3b3b07e581731571497aa8c1460474 637 TIGRFAM TIGR01391 dnaG: DNA primase 8 426 1.0E-114 T 13-10-2018 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 RAM_33795 3b3b3b07e581731571497aa8c1460474 637 SMART SM00766 485 614 2.9E-24 T 13-10-2018 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 RAM_33795 3b3b3b07e581731571497aa8c1460474 637 Gene3D G3DSA:3.90.980.10 114 246 1.3E-34 T 13-10-2018 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily RAM_33795 3b3b3b07e581731571497aa8c1460474 637 Pfam PF10410 DnaB-helicase binding domain of primase 379 431 8.5E-15 T 13-10-2018 IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 RAM_33795 3b3b3b07e581731571497aa8c1460474 637 Hamap MF_00974 DNA primase [dnaG]. 7 619 25.556 T 13-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 RAM_33795 3b3b3b07e581731571497aa8c1460474 637 PIRSF PIRSF002811 5 625 1.2E-146 T 13-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 RAM_33795 3b3b3b07e581731571497aa8c1460474 637 SMART SM00400 40 94 3.3E-34 T 13-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 RAM_33795 3b3b3b07e581731571497aa8c1460474 637 Pfam PF13662 Toprim domain 266 336 4.1E-15 T 13-10-2018 IPR006171 TOPRIM domain RAM_33795 3b3b3b07e581731571497aa8c1460474 637 SUPERFAMILY SSF56731 120 435 1.23E-92 T 13-10-2018 RAM_33795 3b3b3b07e581731571497aa8c1460474 637 Pfam PF08275 DNA primase catalytic core, N-terminal domain 130 257 2.8E-34 T 13-10-2018 IPR013264 DNA primase, catalytic core, N-terminal RAM_33795 3b3b3b07e581731571497aa8c1460474 637 Pfam PF01807 CHC2 zinc finger 10 104 1.7E-33 T 13-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 RAM_33795 3b3b3b07e581731571497aa8c1460474 637 Pfam PF08278 DNA primase DnaG DnaB-binding 486 613 2.5E-26 T 13-10-2018 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 RAM_33795 3b3b3b07e581731571497aa8c1460474 637 SUPERFAMILY SSF57783 7 102 5.27E-32 T 13-10-2018 RAM_33795 3b3b3b07e581731571497aa8c1460474 637 SMART SM00493 265 343 9.8E-15 T 13-10-2018 IPR006171 TOPRIM domain RAM_33795 3b3b3b07e581731571497aa8c1460474 637 Gene3D G3DSA:3.90.580.10 4 104 1.5E-36 T 13-10-2018 IPR036977 DNA Primase, CHC2-type zinc finger GO:0003677|GO:0006260|GO:0008270 RAM_33795 3b3b3b07e581731571497aa8c1460474 637 Gene3D G3DSA:3.40.1360.10 247 377 6.3E-35 T 13-10-2018 RAM_02445 8f056a6b5c29029ef656a9de910a5526 503 Gene3D G3DSA:3.40.50.12780 7 405 9.7E-103 T 13-10-2018 RAM_02445 8f056a6b5c29029ef656a9de910a5526 503 ProSitePatterns PS00455 Putative AMP-binding domain signature. 153 164 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_02445 8f056a6b5c29029ef656a9de910a5526 503 Pfam PF13193 AMP-binding enzyme C-terminal domain 421 496 4.0E-17 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_02445 8f056a6b5c29029ef656a9de910a5526 503 Gene3D G3DSA:3.30.300.30 407 503 2.9E-28 T 13-10-2018 RAM_02445 8f056a6b5c29029ef656a9de910a5526 503 Pfam PF00501 AMP-binding enzyme 16 412 8.0E-92 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_02445 8f056a6b5c29029ef656a9de910a5526 503 SUPERFAMILY SSF56801 11 503 1.57E-133 T 13-10-2018 RAM_22745 8975f1e51c6c1aaadfd50356eccca6cb 124 Gene3D G3DSA:3.30.750.24 7 119 1.7E-26 T 13-10-2018 IPR036513 STAS domain superfamily RAM_22745 8975f1e51c6c1aaadfd50356eccca6cb 124 Pfam PF13466 STAS domain 24 101 1.3E-13 T 13-10-2018 IPR002645 STAS domain RAM_22745 8975f1e51c6c1aaadfd50356eccca6cb 124 TIGRFAM TIGR00377 ant_ant_sig: anti-anti-sigma factor 11 110 3.4E-18 T 13-10-2018 IPR003658 Anti-sigma factor antagonist GO:0006355|GO:0045152 RAM_22745 8975f1e51c6c1aaadfd50356eccca6cb 124 SUPERFAMILY SSF52091 11 117 6.47E-20 T 13-10-2018 IPR036513 STAS domain superfamily RAM_40570 3e3567c82841491b1152f015e715f639 392 ProSitePatterns PS01081 TetR-type HTH domain signature. 229 260 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RAM_40570 3e3567c82841491b1152f015e715f639 392 SUPERFAMILY SSF46689 6 87 2.05E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_40570 3e3567c82841491b1152f015e715f639 392 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 6.9E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_40570 3e3567c82841491b1152f015e715f639 392 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 6.9E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_40570 3e3567c82841491b1152f015e715f639 392 ProSitePatterns PS01081 TetR-type HTH domain signature. 29 60 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RAM_40570 3e3567c82841491b1152f015e715f639 392 Gene3D G3DSA:1.10.357.10 254 390 4.3E-19 T 13-10-2018 RAM_40570 3e3567c82841491b1152f015e715f639 392 Gene3D G3DSA:1.10.357.10 55 194 7.6E-21 T 13-10-2018 RAM_40570 3e3567c82841491b1152f015e715f639 392 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 62 1.5E-14 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_40570 3e3567c82841491b1152f015e715f639 392 Pfam PF00440 Bacterial regulatory proteins, tetR family 218 263 3.6E-16 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_40570 3e3567c82841491b1152f015e715f639 392 SUPERFAMILY SSF46689 209 282 2.59E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_40570 3e3567c82841491b1152f015e715f639 392 Gene3D G3DSA:1.10.10.60 11 53 1.0E-18 T 13-10-2018 RAM_40570 3e3567c82841491b1152f015e715f639 392 Gene3D G3DSA:1.10.10.60 212 253 5.2E-21 T 13-10-2018 RAM_09845 93668388054bed60ca653beac4cdeca3 452 SUPERFAMILY SSF111352 2 402 1.57E-119 T 13-10-2018 RAM_09845 93668388054bed60ca653beac4cdeca3 452 Pfam PF00909 Ammonium Transporter Family 1 421 1.2E-128 T 13-10-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 RAM_09845 93668388054bed60ca653beac4cdeca3 452 Gene3D G3DSA:1.10.3430.10 1 426 1.7E-138 T 13-10-2018 IPR029020 Ammonium/urea transporter RAM_09845 93668388054bed60ca653beac4cdeca3 452 ProSitePatterns PS01219 Ammonium transporters signature. 176 201 - T 13-10-2018 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 RAM_09845 93668388054bed60ca653beac4cdeca3 452 TIGRFAM TIGR00836 amt: ammonium transporter 1 421 1.5E-137 T 13-10-2018 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 RAM_43855 e439c372df6ba6f9cdf14ac739e7e599 927 SMART SM00387 544 654 1.0E-7 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_43855 e439c372df6ba6f9cdf14ac739e7e599 927 Pfam PF00672 HAMP domain 357 429 2.5E-7 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_43855 e439c372df6ba6f9cdf14ac739e7e599 927 Gene3D G3DSA:3.30.565.10 507 652 2.0E-13 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_43855 e439c372df6ba6f9cdf14ac739e7e599 927 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 547 649 1.1E-7 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_43855 e439c372df6ba6f9cdf14ac739e7e599 927 SMART SM00304 357 432 9.8E-4 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_43855 e439c372df6ba6f9cdf14ac739e7e599 927 SUPERFAMILY SSF55874 535 651 9.82E-17 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_43855 e439c372df6ba6f9cdf14ac739e7e599 927 Pfam PF08376 Nitrate and nitrite sensing 81 319 6.5E-36 T 13-10-2018 IPR013587 Nitrate/nitrite sensing protein RAM_43855 e439c372df6ba6f9cdf14ac739e7e599 927 PRINTS PR01217 Proline rich extensin signature 690 711 5.2E-9 T 13-10-2018 RAM_43855 e439c372df6ba6f9cdf14ac739e7e599 927 PRINTS PR01217 Proline rich extensin signature 659 675 5.2E-9 T 13-10-2018 RAM_43855 e439c372df6ba6f9cdf14ac739e7e599 927 PRINTS PR01217 Proline rich extensin signature 757 774 5.2E-9 T 13-10-2018 RAM_43855 e439c372df6ba6f9cdf14ac739e7e599 927 PRINTS PR01217 Proline rich extensin signature 797 822 5.2E-9 T 13-10-2018 RAM_08625 a12f15c656dc418e520c16f0b7e378b3 256 Gene3D G3DSA:2.30.30.370 1 54 1.2E-28 T 13-10-2018 RAM_08625 a12f15c656dc418e520c16f0b7e378b3 256 Pfam PF10370 Domain of unknown function (DUF2437) 2 54 8.6E-17 T 13-10-2018 IPR018833 Domain of unknown function DUF2437 RAM_08625 a12f15c656dc418e520c16f0b7e378b3 256 Gene3D G3DSA:3.90.850.10 55 255 3.6E-81 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 RAM_08625 a12f15c656dc418e520c16f0b7e378b3 256 SUPERFAMILY SSF56529 50 254 1.22E-74 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 RAM_08625 a12f15c656dc418e520c16f0b7e378b3 256 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 59 253 1.7E-63 T 13-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 RAM_02010 5d31ecb24358ce73ae11270bcb4d67da 244 SUPERFAMILY SSF51905 3 223 3.02E-27 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_02010 5d31ecb24358ce73ae11270bcb4d67da 244 Pfam PF01494 FAD binding domain 2 195 7.6E-43 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_02010 5d31ecb24358ce73ae11270bcb4d67da 244 Gene3D G3DSA:3.30.9.10 15 156 9.3E-41 T 13-10-2018 RAM_02010 5d31ecb24358ce73ae11270bcb4d67da 244 SUPERFAMILY SSF54373 29 129 9.02E-41 T 13-10-2018 RAM_02010 5d31ecb24358ce73ae11270bcb4d67da 244 Gene3D G3DSA:3.30.9.10 186 241 1.3E-8 T 13-10-2018 RAM_02010 5d31ecb24358ce73ae11270bcb4d67da 244 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 20 7.8E-15 T 13-10-2018 RAM_02010 5d31ecb24358ce73ae11270bcb4d67da 244 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 132 147 7.8E-15 T 13-10-2018 RAM_02010 5d31ecb24358ce73ae11270bcb4d67da 244 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 147 163 7.8E-15 T 13-10-2018 RAM_01580 99dfc22145888b281f62f4bf83d958e2 181 Gene3D G3DSA:1.10.10.10 1 87 7.4E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_01580 99dfc22145888b281f62f4bf83d958e2 181 SUPERFAMILY SSF46785 3 175 6.98E-42 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_01580 99dfc22145888b281f62f4bf83d958e2 181 Pfam PF03551 Transcriptional regulator PadR-like family 7 79 7.0E-14 T 13-10-2018 IPR005149 Transcription regulator PadR, N-terminal RAM_01580 99dfc22145888b281f62f4bf83d958e2 181 Pfam PF10400 Virulence activator alpha C-term 94 174 3.1E-23 T 13-10-2018 IPR018309 Transcription regulator PadR, C-terminal RAM_37135 8bd5f63e00f752c907c87583fa8bce9b 386 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 1 294 8.6E-47 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAM_37135 8bd5f63e00f752c907c87583fa8bce9b 386 SUPERFAMILY SSF51905 139 303 8.82E-23 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_37135 8bd5f63e00f752c907c87583fa8bce9b 386 SUPERFAMILY SSF51905 1 182 3.81E-37 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_37135 8bd5f63e00f752c907c87583fa8bce9b 386 Gene3D G3DSA:3.50.50.60 108 232 1.6E-96 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_37135 8bd5f63e00f752c907c87583fa8bce9b 386 Gene3D G3DSA:3.30.390.30 313 383 3.8E-11 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RAM_37135 8bd5f63e00f752c907c87583fa8bce9b 386 SUPERFAMILY SSF55424 305 380 7.69E-18 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RAM_37135 8bd5f63e00f752c907c87583fa8bce9b 386 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 264 271 9.4E-17 T 13-10-2018 RAM_37135 8bd5f63e00f752c907c87583fa8bce9b 386 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 98 107 9.4E-17 T 13-10-2018 RAM_37135 8bd5f63e00f752c907c87583fa8bce9b 386 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 139 164 9.4E-17 T 13-10-2018 RAM_37135 8bd5f63e00f752c907c87583fa8bce9b 386 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 226 240 9.4E-17 T 13-10-2018 RAM_37135 8bd5f63e00f752c907c87583fa8bce9b 386 Gene3D G3DSA:3.50.50.60 1 294 1.6E-96 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_37135 8bd5f63e00f752c907c87583fa8bce9b 386 Pfam PF14759 Reductase C-terminal 313 374 3.9E-10 T 13-10-2018 IPR028202 Reductase, C-terminal RAM_12495 5cc1743f1aa8c93081a301fd4a60ecfa 253 SMART SM00563 35 154 2.1E-34 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 RAM_12495 5cc1743f1aa8c93081a301fd4a60ecfa 253 Pfam PF01553 Acyltransferase 22 151 9.6E-23 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 RAM_12495 5cc1743f1aa8c93081a301fd4a60ecfa 253 SUPERFAMILY SSF69593 2 226 2.22E-53 T 13-10-2018 RAM_22950 cef09e073fb05862d64802c4c86344bc 765 Gene3D G3DSA:2.60.40.10 638 748 1.7E-20 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_22950 cef09e073fb05862d64802c4c86344bc 765 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 31 357 5.7E-69 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_22950 cef09e073fb05862d64802c4c86344bc 765 Gene3D G3DSA:3.20.20.300 20 374 2.7E-96 T 13-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 RAM_22950 cef09e073fb05862d64802c4c86344bc 765 SUPERFAMILY SSF51445 11 395 3.37E-91 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_22950 cef09e073fb05862d64802c4c86344bc 765 Gene3D G3DSA:3.40.50.1700 382 630 1.1E-61 T 13-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 RAM_22950 cef09e073fb05862d64802c4c86344bc 765 SMART SM01217 666 735 2.7E-21 T 13-10-2018 IPR026891 Fibronectin type III-like domain RAM_22950 cef09e073fb05862d64802c4c86344bc 765 PRINTS PR00133 Glycosyl hydrolase family 3 signature 107 123 1.4E-20 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_22950 cef09e073fb05862d64802c4c86344bc 765 PRINTS PR00133 Glycosyl hydrolase family 3 signature 176 192 1.4E-20 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_22950 cef09e073fb05862d64802c4c86344bc 765 PRINTS PR00133 Glycosyl hydrolase family 3 signature 277 295 1.4E-20 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_22950 cef09e073fb05862d64802c4c86344bc 765 PRINTS PR00133 Glycosyl hydrolase family 3 signature 130 149 1.4E-20 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_22950 cef09e073fb05862d64802c4c86344bc 765 PRINTS PR00133 Glycosyl hydrolase family 3 signature 207 223 1.4E-20 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_22950 cef09e073fb05862d64802c4c86344bc 765 Pfam PF14310 Fibronectin type III-like domain 666 735 2.0E-14 T 13-10-2018 IPR026891 Fibronectin type III-like domain RAM_22950 cef09e073fb05862d64802c4c86344bc 765 SUPERFAMILY SSF52279 396 629 1.83E-42 T 13-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 RAM_22950 cef09e073fb05862d64802c4c86344bc 765 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 396 629 6.7E-44 T 13-10-2018 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 RAM_09910 3fcbef2767032c0389f81b527c745f7b 512 Gene3D G3DSA:3.40.50.300 90 287 2.6E-118 T 13-10-2018 RAM_09910 3fcbef2767032c0389f81b527c745f7b 512 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 483 33.344 T 13-10-2018 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 Reactome: R-HSA-1799339 RAM_09910 3fcbef2767032c0389f81b527c745f7b 512 Pfam PF02978 Signal peptide binding domain 330 427 4.4E-29 T 13-10-2018 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 RAM_09910 3fcbef2767032c0389f81b527c745f7b 512 Pfam PF00448 SRP54-type protein, GTPase domain 100 298 1.8E-69 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 RAM_09910 3fcbef2767032c0389f81b527c745f7b 512 SMART SM00382 99 303 7.9E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_09910 3fcbef2767032c0389f81b527c745f7b 512 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 271 284 - T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 RAM_09910 3fcbef2767032c0389f81b527c745f7b 512 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 6.3E-20 T 13-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 RAM_09910 3fcbef2767032c0389f81b527c745f7b 512 SUPERFAMILY SSF47446 329 430 1.37E-32 T 13-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 RAM_09910 3fcbef2767032c0389f81b527c745f7b 512 TIGRFAM TIGR00959 ffh: signal recognition particle protein 2 428 2.1E-177 T 13-10-2018 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 RAM_09910 3fcbef2767032c0389f81b527c745f7b 512 Gene3D G3DSA:1.20.120.140 5 308 2.6E-118 T 13-10-2018 RAM_09910 3fcbef2767032c0389f81b527c745f7b 512 SUPERFAMILY SSF52540 42 356 2.43E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_09910 3fcbef2767032c0389f81b527c745f7b 512 SMART SM00963 1 86 6.6E-31 T 13-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 RAM_09910 3fcbef2767032c0389f81b527c745f7b 512 SMART SM00962 100 298 1.8E-105 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 RAM_09910 3fcbef2767032c0389f81b527c745f7b 512 Gene3D G3DSA:1.10.260.30 313 436 9.9E-40 T 13-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 RAM_27885 3122471735efe3b0f92cc88fdcb13832 875 Gene3D G3DSA:3.30.470.20 657 857 8.3E-54 T 13-10-2018 RAM_27885 3122471735efe3b0f92cc88fdcb13832 875 SUPERFAMILY SSF55729 17 153 1.89E-20 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_27885 3122471735efe3b0f92cc88fdcb13832 875 SUPERFAMILY SSF56059 661 861 1.39E-26 T 13-10-2018 RAM_27885 3122471735efe3b0f92cc88fdcb13832 875 Gene3D G3DSA:3.40.50.261 316 474 1.0E-46 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RAM_27885 3122471735efe3b0f92cc88fdcb13832 875 Gene3D G3DSA:3.40.50.720 176 315 2.6E-37 T 13-10-2018 RAM_27885 3122471735efe3b0f92cc88fdcb13832 875 SUPERFAMILY SSF51735 183 317 2.84E-33 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_27885 3122471735efe3b0f92cc88fdcb13832 875 Gene3D G3DSA:3.40.630.30 9 165 2.6E-33 T 13-10-2018 RAM_27885 3122471735efe3b0f92cc88fdcb13832 875 Gene3D G3DSA:3.30.1490.20 676 748 8.3E-54 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 RAM_27885 3122471735efe3b0f92cc88fdcb13832 875 Pfam PF13549 ATP-grasp domain 653 860 3.5E-52 T 13-10-2018 RAM_27885 3122471735efe3b0f92cc88fdcb13832 875 SUPERFAMILY SSF52210 477 630 8.37E-26 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RAM_27885 3122471735efe3b0f92cc88fdcb13832 875 SMART SM00881 191 286 3.7E-29 T 13-10-2018 IPR003781 CoA-binding GO:0048037 RAM_27885 3122471735efe3b0f92cc88fdcb13832 875 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 334 469 2.5E-43 T 13-10-2018 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain RAM_27885 3122471735efe3b0f92cc88fdcb13832 875 Pfam PF13380 CoA binding domain 196 315 3.8E-23 T 13-10-2018 IPR003781 CoA-binding GO:0048037 RAM_27885 3122471735efe3b0f92cc88fdcb13832 875 Pfam PF00583 Acetyltransferase (GNAT) family 61 148 1.3E-9 T 13-10-2018 IPR000182 GNAT domain RAM_27885 3122471735efe3b0f92cc88fdcb13832 875 Gene3D G3DSA:3.40.50.261 476 633 6.1E-37 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RAM_27885 3122471735efe3b0f92cc88fdcb13832 875 SUPERFAMILY SSF52210 312 472 7.46E-37 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RAM_26060 103e5c0dee467d5e0dfc7b86e10fb49f 427 Hamap MF_00423 L-seryl-tRNA(Sec) selenium transferase [selA]. 1 427 178.169 T 13-10-2018 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 RAM_26060 103e5c0dee467d5e0dfc7b86e10fb49f 427 Gene3D G3DSA:3.40.640.10 83 333 5.5E-116 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_26060 103e5c0dee467d5e0dfc7b86e10fb49f 427 Pfam PF03841 L-seryl-tRNA selenium transferase 71 411 1.6E-100 T 13-10-2018 IPR018319 L-seryl-tRNA selenium transferase-like KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 RAM_26060 103e5c0dee467d5e0dfc7b86e10fb49f 427 Gene3D G3DSA:3.90.1150.110 8 414 5.5E-116 T 13-10-2018 RAM_26060 103e5c0dee467d5e0dfc7b86e10fb49f 427 Pfam PF12390 Selenocysteine synthase N terminal 5 44 3.0E-10 T 13-10-2018 IPR025862 L-seryl-tRNA selenium transferase N-terminal domain KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 RAM_26060 103e5c0dee467d5e0dfc7b86e10fb49f 427 SUPERFAMILY SSF53383 67 422 4.94E-35 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_26060 103e5c0dee467d5e0dfc7b86e10fb49f 427 TIGRFAM TIGR00474 selA: L-seryl-tRNA(Sec) selenium transferase 6 424 3.9E-128 T 13-10-2018 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 RAM_21815 ce9726a365cf7a259381fa51ec469841 674 TIGRFAM TIGR00976 /NonD: hydrolase CocE/NonD family protein 20 505 3.1E-70 T 13-10-2018 IPR005674 CocE/Serine esterase GO:0016787 RAM_21815 ce9726a365cf7a259381fa51ec469841 674 SUPERFAMILY SSF53474 5 338 4.65E-71 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_21815 ce9726a365cf7a259381fa51ec469841 674 SMART SM00939 291 549 1.8E-89 T 13-10-2018 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 RAM_21815 ce9726a365cf7a259381fa51ec469841 674 Pfam PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain 303 523 1.0E-57 T 13-10-2018 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 RAM_21815 ce9726a365cf7a259381fa51ec469841 674 Gene3D G3DSA:3.40.50.1820 17 312 1.3E-60 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_21815 ce9726a365cf7a259381fa51ec469841 674 Gene3D G3DSA:2.60.120.260 352 535 1.2E-42 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_21815 ce9726a365cf7a259381fa51ec469841 674 SUPERFAMILY SSF49785 329 531 3.4E-58 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_21815 ce9726a365cf7a259381fa51ec469841 674 Gene3D G3DSA:1.10.3020.10 154 227 1.3E-60 T 13-10-2018 RAM_21815 ce9726a365cf7a259381fa51ec469841 674 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 23 274 2.2E-58 T 13-10-2018 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 RAM_24090 abb7092dbbb7301f518bbdc819abefa1 532 SUPERFAMILY SSF56317 265 498 5.1E-41 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily RAM_24090 abb7092dbbb7301f518bbdc819abefa1 532 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 75 464 6.6E-74 T 13-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 RAM_24090 abb7092dbbb7301f518bbdc819abefa1 532 Hamap MF_01148 Apolipoprotein N-acyltransferase [lnt]. 22 502 16.601 T 13-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 RAM_24090 abb7092dbbb7301f518bbdc819abefa1 532 Pfam PF00795 Carbon-nitrogen hydrolase 289 483 7.8E-21 T 13-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 RAM_24090 abb7092dbbb7301f518bbdc819abefa1 532 Gene3D G3DSA:3.60.110.10 245 497 1.9E-20 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily RAM_40555 ca130386c58b987076429b571d9f04a9 777 SUPERFAMILY SSF48208 301 737 2.04E-18 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_40555 ca130386c58b987076429b571d9f04a9 777 TIGRFAM TIGR01180 aman2_put: putative alpha-1,2-mannosidase 6 772 1.2E-144 T 13-10-2018 IPR005887 Alpha-1,2-mannosidase, putative RAM_40555 ca130386c58b987076429b571d9f04a9 777 Gene3D G3DSA:1.20.1610.10 495 649 3.2E-217 T 13-10-2018 RAM_40555 ca130386c58b987076429b571d9f04a9 777 Gene3D G3DSA:1.20.1050.60 389 494 3.2E-217 T 13-10-2018 RAM_40555 ca130386c58b987076429b571d9f04a9 777 Pfam PF07971 Glycosyl hydrolase family 92 276 769 7.1E-151 T 13-10-2018 IPR012939 Glycosyl hydrolase family 92 RAM_40555 ca130386c58b987076429b571d9f04a9 777 Gene3D G3DSA:3.30.2080.10 334 772 3.2E-217 T 13-10-2018 RAM_40555 ca130386c58b987076429b571d9f04a9 777 Gene3D G3DSA:2.70.98.10 32 388 3.2E-217 T 13-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 RAM_21390 92079e090627dd295f118c5434440ac0 319 Pfam PF07859 alpha/beta hydrolase fold 84 290 2.8E-51 T 13-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 RAM_21390 92079e090627dd295f118c5434440ac0 319 Gene3D G3DSA:3.40.50.1820 17 316 1.1E-71 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_21390 92079e090627dd295f118c5434440ac0 319 SUPERFAMILY SSF53474 58 312 5.94E-57 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_30200 01d3b348134a06b98f27dd55d0f82364 127 SUPERFAMILY SSF52091 21 125 1.96E-17 T 13-10-2018 IPR036513 STAS domain superfamily RAM_30200 01d3b348134a06b98f27dd55d0f82364 127 Pfam PF13466 STAS domain 32 110 9.0E-11 T 13-10-2018 IPR002645 STAS domain RAM_30200 01d3b348134a06b98f27dd55d0f82364 127 TIGRFAM TIGR00377 ant_ant_sig: anti-anti-sigma factor 19 121 1.3E-16 T 13-10-2018 IPR003658 Anti-sigma factor antagonist GO:0006355|GO:0045152 RAM_30200 01d3b348134a06b98f27dd55d0f82364 127 Gene3D G3DSA:3.30.750.24 17 127 8.1E-29 T 13-10-2018 IPR036513 STAS domain superfamily RAM_13910 c03fa43b75e84d6a16d3ea67191208ce 143 PIRSF PIRSF001399 1 142 3.2E-56 T 13-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RAM_13910 c03fa43b75e84d6a16d3ea67191208ce 143 Pfam PF01220 Dehydroquinase class II 4 138 2.0E-53 T 13-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RAM_13910 c03fa43b75e84d6a16d3ea67191208ce 143 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 4 139 7.3E-55 T 13-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RAM_13910 c03fa43b75e84d6a16d3ea67191208ce 143 SUPERFAMILY SSF52304 2 141 5.23E-55 T 13-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RAM_13910 c03fa43b75e84d6a16d3ea67191208ce 143 Gene3D G3DSA:3.40.50.9100 1 143 2.2E-58 T 13-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RAM_13910 c03fa43b75e84d6a16d3ea67191208ce 143 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 4 139 6.0E-47 T 13-10-2018 RAM_13910 c03fa43b75e84d6a16d3ea67191208ce 143 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 143 61.178 T 13-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RAM_19595 e85f43b69e38e65c3f6c6a132412536e 200 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 56 8.8E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_19595 e85f43b69e38e65c3f6c6a132412536e 200 Gene3D G3DSA:1.10.10.60 1 51 7.5E-12 T 13-10-2018 RAM_19595 e85f43b69e38e65c3f6c6a132412536e 200 SUPERFAMILY SSF48498 76 194 8.9E-12 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_19595 e85f43b69e38e65c3f6c6a132412536e 200 SUPERFAMILY SSF46689 6 77 7.28E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_19595 e85f43b69e38e65c3f6c6a132412536e 200 Gene3D G3DSA:1.10.357.10 52 191 3.1E-18 T 13-10-2018 RAM_03165 1d69d447fcd651e2e265eb70fcd3101f 1763 SUPERFAMILY SSF52151 553 838 1.36E-68 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RAM_03165 1d69d447fcd651e2e265eb70fcd3101f 1763 Pfam PF08659 KR domain 1334 1507 1.3E-46 T 13-10-2018 IPR013968 Polyketide synthase, ketoreductase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_03165 1d69d447fcd651e2e265eb70fcd3101f 1763 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 557 848 4.5E-120 T 13-10-2018 IPR020801 Polyketide synthase, acyl transferase domain RAM_03165 1d69d447fcd651e2e265eb70fcd3101f 1763 Gene3D G3DSA:3.30.70.3290 479 893 1.7E-151 T 13-10-2018 RAM_03165 1d69d447fcd651e2e265eb70fcd3101f 1763 Pfam PF00698 Acyl transferase domain 555 867 6.8E-84 T 13-10-2018 IPR014043 Acyl transferase RAM_03165 1d69d447fcd651e2e265eb70fcd3101f 1763 Gene3D G3DSA:3.10.129.110 900 1187 2.4E-115 T 13-10-2018 RAM_03165 1d69d447fcd651e2e265eb70fcd3101f 1763 SUPERFAMILY SSF51735 1330 1562 2.02E-33 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_03165 1d69d447fcd651e2e265eb70fcd3101f 1763 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1645 1660 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_03165 1d69d447fcd651e2e265eb70fcd3101f 1763 SMART SM00826 911 1070 3.9E-81 T 13-10-2018 IPR020807 Polyketide synthase, dehydratase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_03165 1d69d447fcd651e2e265eb70fcd3101f 1763 Gene3D G3DSA:1.10.1200.10 1598 1691 1.5E-34 T 13-10-2018 IPR036736 ACP-like superfamily RAM_03165 1d69d447fcd651e2e265eb70fcd3101f 1763 Gene3D G3DSA:3.40.47.10 27 478 3.6E-184 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_03165 1d69d447fcd651e2e265eb70fcd3101f 1763 Pfam PF00550 Phosphopantetheine attachment site 1620 1686 5.8E-12 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_03165 1d69d447fcd651e2e265eb70fcd3101f 1763 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 197 213 - T 13-10-2018 IPR018201 Beta-ketoacyl synthase, active site RAM_03165 1d69d447fcd651e2e265eb70fcd3101f 1763 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 410 494 2.9E-11 T 13-10-2018 IPR032821 Ketoacyl-synthetase, C-terminal extension Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_03165 1d69d447fcd651e2e265eb70fcd3101f 1763 Gene3D G3DSA:3.40.50.720 1188 1588 1.6E-105 T 13-10-2018 RAM_03165 1d69d447fcd651e2e265eb70fcd3101f 1763 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 36 284 2.1E-88 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal RAM_03165 1d69d447fcd651e2e265eb70fcd3101f 1763 Pfam PF14765 Polyketide synthase dehydratase 911 1181 2.1E-59 T 13-10-2018 IPR020807 Polyketide synthase, dehydratase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_03165 1d69d447fcd651e2e265eb70fcd3101f 1763 SMART SM00823 Phosphopantetheine attachment site 1618 1690 6.2E-32 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_03165 1d69d447fcd651e2e265eb70fcd3101f 1763 SMART SM01294 1619 1686 4.8E-5 T 13-10-2018 RAM_03165 1d69d447fcd651e2e265eb70fcd3101f 1763 SUPERFAMILY SSF55048 678 743 6.67E-13 T 13-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding RAM_03165 1d69d447fcd651e2e265eb70fcd3101f 1763 SUPERFAMILY SSF47336 1612 1696 7.2E-22 T 13-10-2018 IPR036736 ACP-like superfamily RAM_03165 1d69d447fcd651e2e265eb70fcd3101f 1763 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 1334 1509 2.3E-43 T 13-10-2018 RAM_03165 1d69d447fcd651e2e265eb70fcd3101f 1763 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 292 407 5.3E-46 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal RAM_03165 1d69d447fcd651e2e265eb70fcd3101f 1763 SUPERFAMILY SSF51735 1189 1321 1.58E-27 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_03165 1d69d447fcd651e2e265eb70fcd3101f 1763 SUPERFAMILY SSF53901 34 406 5.24E-102 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_03165 1d69d447fcd651e2e265eb70fcd3101f 1763 Gene3D G3DSA:3.40.366.10 555 851 1.7E-151 T 13-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 RAM_03165 1d69d447fcd651e2e265eb70fcd3101f 1763 SMART SM00825 Beta-ketoacyl synthase 38 460 2.8E-204 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RAM_30985 589582696536cbc8c77a3ffe6aa32527 386 SUPERFAMILY SSF56266 6 382 1.28E-122 T 13-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 RAM_30985 589582696536cbc8c77a3ffe6aa32527 386 Pfam PF01960 ArgJ family 11 386 3.0E-127 T 13-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 RAM_30985 589582696536cbc8c77a3ffe6aa32527 386 Gene3D G3DSA:3.60.70.12 1 181 3.5E-64 T 13-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 RAM_30985 589582696536cbc8c77a3ffe6aa32527 386 Hamap MF_01106 Arginine biosynthesis bifunctional protein ArgJ [argJ]. 1 386 130.189 T 13-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 RAM_30985 589582696536cbc8c77a3ffe6aa32527 386 ProDom PD004193 ACETYLTRANSFERASE ORNITHINE ARGININE BIOSYNTHESIS ARGJ GLUTAMATE N-ACETYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIFUNCTIONAL 17 384 4.0E-115 T 13-10-2018 RAM_30985 589582696536cbc8c77a3ffe6aa32527 386 Gene3D G3DSA:3.10.20.340 261 386 1.7E-41 T 13-10-2018 RAM_30985 589582696536cbc8c77a3ffe6aa32527 386 TIGRFAM TIGR00120 ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase 2 385 2.5E-110 T 13-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 RAM_30985 589582696536cbc8c77a3ffe6aa32527 386 Gene3D G3DSA:3.30.2330.10 182 260 6.8E-26 T 13-10-2018 RAM_23490 f3fb6a5ab5cb42b04f4d3f6074ac603d 146 SUPERFAMILY SSF46785 6 137 4.42E-35 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_23490 f3fb6a5ab5cb42b04f4d3f6074ac603d 146 Pfam PF01638 HxlR-like helix-turn-helix 16 103 2.5E-24 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type RAM_23490 f3fb6a5ab5cb42b04f4d3f6074ac603d 146 Gene3D G3DSA:1.10.10.10 3 144 4.5E-45 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_19165 c987b11cab713cefa25c0246a3e90c7a 137 SUPERFAMILY SSF50685 23 136 1.15E-23 T 13-10-2018 IPR036908 RlpA-like domain superfamily RAM_19165 c987b11cab713cefa25c0246a3e90c7a 137 Pfam PF03330 Lytic transglycolase 36 132 1.5E-20 T 13-10-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain RAM_19165 c987b11cab713cefa25c0246a3e90c7a 137 Gene3D G3DSA:2.40.40.10 30 137 6.6E-28 T 13-10-2018 IPR036908 RlpA-like domain superfamily RAM_34390 29e1edbaf16f09087dee123b5d3caa16 485 ProSitePatterns PS00905 GTP1/OBG family signature. 213 226 - T 13-10-2018 IPR006074 GTP1/OBG, conserved site GO:0005525 RAM_34390 29e1edbaf16f09087dee123b5d3caa16 485 SUPERFAMILY SSF52540 152 346 5.52E-47 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_34390 29e1edbaf16f09087dee123b5d3caa16 485 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 5 335 2.7E-123 T 13-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 RAM_34390 29e1edbaf16f09087dee123b5d3caa16 485 TIGRFAM TIGR03595 Obg_CgtA_exten: Obg family GTPase CgtA, C-terminal extension 365 433 3.0E-26 T 13-10-2018 IPR015349 GTP-binding protein OBG, C-terminal GO:0000166 RAM_34390 29e1edbaf16f09087dee123b5d3caa16 485 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 163 183 8.0E-35 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 RAM_34390 29e1edbaf16f09087dee123b5d3caa16 485 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 184 202 8.0E-35 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 RAM_34390 29e1edbaf16f09087dee123b5d3caa16 485 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 211 226 8.0E-35 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 RAM_34390 29e1edbaf16f09087dee123b5d3caa16 485 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 228 246 8.0E-35 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 RAM_34390 29e1edbaf16f09087dee123b5d3caa16 485 SUPERFAMILY SSF102741 363 434 1.44E-21 T 13-10-2018 IPR036346 GTP-binding protein OBG, C-terminal domain superfamily RAM_34390 29e1edbaf16f09087dee123b5d3caa16 485 Gene3D G3DSA:2.70.210.12 2 159 7.1E-51 T 13-10-2018 IPR036726 GTP1/OBG domain superfamily RAM_34390 29e1edbaf16f09087dee123b5d3caa16 485 Gene3D G3DSA:2.40.240.60 361 435 8.8E-22 T 13-10-2018 IPR036346 GTP-binding protein OBG, C-terminal domain superfamily RAM_34390 29e1edbaf16f09087dee123b5d3caa16 485 SUPERFAMILY SSF82051 5 158 2.88E-47 T 13-10-2018 IPR036726 GTP1/OBG domain superfamily RAM_34390 29e1edbaf16f09087dee123b5d3caa16 485 Pfam PF01926 50S ribosome-binding GTPase 162 289 3.3E-22 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 RAM_34390 29e1edbaf16f09087dee123b5d3caa16 485 Pfam PF09269 Domain of unknown function (DUF1967) 362 432 1.2E-25 T 13-10-2018 IPR015349 GTP-binding protein OBG, C-terminal GO:0000166 RAM_34390 29e1edbaf16f09087dee123b5d3caa16 485 Gene3D G3DSA:3.40.50.300 161 359 8.2E-49 T 13-10-2018 RAM_34390 29e1edbaf16f09087dee123b5d3caa16 485 Hamap MF_01454 GTPase Obg [obg]. 4 336 44.307 T 13-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 RAM_34390 29e1edbaf16f09087dee123b5d3caa16 485 Pfam PF01018 GTP1/OBG 6 158 4.0E-51 T 13-10-2018 IPR006169 GTP1/OBG domain RAM_39660 764292ecd3f22e08673624fde696b004 192 SUPERFAMILY SSF52499 2 186 9.55E-45 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 RAM_39660 764292ecd3f22e08673624fde696b004 192 Gene3D G3DSA:3.40.50.850 3 183 1.7E-56 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 RAM_39660 764292ecd3f22e08673624fde696b004 192 Pfam PF00857 Isochorismatase family 3 185 3.8E-30 T 13-10-2018 IPR000868 Isochorismatase-like GO:0003824 RAM_40870 e29629802ecdbd21818179c0616cf96a 396 SUPERFAMILY SSF103473 5 384 1.31E-30 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_40870 e29629802ecdbd21818179c0616cf96a 396 Gene3D G3DSA:1.20.1250.20 8 191 1.4E-9 T 13-10-2018 RAM_40870 e29629802ecdbd21818179c0616cf96a 396 Gene3D G3DSA:1.20.1250.20 203 384 1.5E-14 T 13-10-2018 RAM_09415 e41f85ce78104c96f385280aa84d7bcc 277 SUPERFAMILY SSF161098 10 276 1.21E-59 T 13-10-2018 IPR035906 MetI-like superfamily RAM_09415 e41f85ce78104c96f385280aa84d7bcc 277 Gene3D G3DSA:1.10.3720.10 6 264 1.1E-55 T 13-10-2018 IPR035906 MetI-like superfamily RAM_09415 e41f85ce78104c96f385280aa84d7bcc 277 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 88 266 2.8E-15 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_14605 45bfa1cc45fbf8e71f0acce1dbac6e42 153 PIRSF PIRSF000239 1 152 7.6E-21 T 13-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 RAM_14605 45bfa1cc45fbf8e71f0acce1dbac6e42 153 Gene3D G3DSA:3.40.30.10 1 150 7.7E-44 T 13-10-2018 RAM_14605 45bfa1cc45fbf8e71f0acce1dbac6e42 153 Pfam PF00578 AhpC/TSA family 4 127 7.8E-34 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 RAM_14605 45bfa1cc45fbf8e71f0acce1dbac6e42 153 SUPERFAMILY SSF52833 3 148 1.7E-45 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RAM_01065 61d9b20d1c14294fe27c2c18eacf16e7 90 Gene3D G3DSA:1.10.1200.10 13 90 1.6E-15 T 13-10-2018 IPR036736 ACP-like superfamily RAM_01065 61d9b20d1c14294fe27c2c18eacf16e7 90 Pfam PF00550 Phosphopantetheine attachment site 16 75 1.7E-4 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_01065 61d9b20d1c14294fe27c2c18eacf16e7 90 SUPERFAMILY SSF47336 15 88 2.09E-10 T 13-10-2018 IPR036736 ACP-like superfamily RAM_26770 3e2bea678ed51be0d21530038e8c5a10 176 SUPERFAMILY SSF46785 23 164 3.31E-29 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_26770 3e2bea678ed51be0d21530038e8c5a10 176 PRINTS PR00598 Bacterial regulatory protein MarR family signature 113 129 2.4E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_26770 3e2bea678ed51be0d21530038e8c5a10 176 PRINTS PR00598 Bacterial regulatory protein MarR family signature 94 109 2.4E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_26770 3e2bea678ed51be0d21530038e8c5a10 176 PRINTS PR00598 Bacterial regulatory protein MarR family signature 143 163 2.4E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_26770 3e2bea678ed51be0d21530038e8c5a10 176 SMART SM00347 53 153 3.5E-17 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_26770 3e2bea678ed51be0d21530038e8c5a10 176 Gene3D G3DSA:1.10.10.10 19 171 4.1E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_26770 3e2bea678ed51be0d21530038e8c5a10 176 Pfam PF01047 MarR family 61 118 6.4E-9 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_21175 f8de11d9a36b21d15731a5db0e25389b 497 Gene3D G3DSA:2.120.10.10 32 397 1.6E-82 T 13-10-2018 RAM_21175 f8de11d9a36b21d15731a5db0e25389b 497 SUPERFAMILY SSF50939 37 389 1.54E-71 T 13-10-2018 IPR036278 Sialidase superfamily KEGG: 00511+3.2.1.18|KEGG: 00600+3.2.1.18|Reactome: R-HSA-1660662|Reactome: R-HSA-4085001 RAM_21175 f8de11d9a36b21d15731a5db0e25389b 497 Pfam PF13088 BNR repeat-like domain 62 365 8.5E-27 T 13-10-2018 IPR011040 Sialidase KEGG: 00511+3.2.1.18|KEGG: 00600+3.2.1.18|Reactome: R-HSA-1660662|Reactome: R-HSA-4085001 RAM_39790 7e440aa0c894149cd2ec571676d46c31 588 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 188 284 2.2E-30 T 13-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RAM_39790 7e440aa0c894149cd2ec571676d46c31 588 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 492 588 7.6E-32 T 13-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RAM_39790 7e440aa0c894149cd2ec571676d46c31 588 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 312 489 2.1E-58 T 13-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RAM_39790 7e440aa0c894149cd2ec571676d46c31 588 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 7 185 2.7E-61 T 13-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RAM_39790 7e440aa0c894149cd2ec571676d46c31 588 SUPERFAMILY SSF48179 492 588 1.28E-28 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RAM_39790 7e440aa0c894149cd2ec571676d46c31 588 Gene3D G3DSA:3.40.50.720 1 186 1.6E-65 T 13-10-2018 RAM_39790 7e440aa0c894149cd2ec571676d46c31 588 SUPERFAMILY SSF51735 4 185 3.84E-53 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_39790 7e440aa0c894149cd2ec571676d46c31 588 SUPERFAMILY SSF51735 307 489 7.48E-52 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_39790 7e440aa0c894149cd2ec571676d46c31 588 Gene3D G3DSA:1.10.1040.50 495 588 4.5E-32 T 13-10-2018 RAM_39790 7e440aa0c894149cd2ec571676d46c31 588 Gene3D G3DSA:1.10.1040.10 187 302 1.1E-31 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RAM_39790 7e440aa0c894149cd2ec571676d46c31 588 SUPERFAMILY SSF48179 188 288 3.15E-29 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RAM_39790 7e440aa0c894149cd2ec571676d46c31 588 Gene3D G3DSA:3.40.50.720 307 494 3.8E-63 T 13-10-2018 RAM_17685 27d9b1415386356da6814aa5e04f8f7a 306 SUPERFAMILY SSF50129 2 147 2.67E-32 T 13-10-2018 IPR011032 GroES-like superfamily RAM_17685 27d9b1415386356da6814aa5e04f8f7a 306 Gene3D G3DSA:3.90.180.10 5 303 3.7E-78 T 13-10-2018 RAM_17685 27d9b1415386356da6814aa5e04f8f7a 306 SUPERFAMILY SSF51735 114 275 8.65E-30 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_17685 27d9b1415386356da6814aa5e04f8f7a 306 Gene3D G3DSA:3.40.50.720 125 255 3.7E-78 T 13-10-2018 RAM_17685 27d9b1415386356da6814aa5e04f8f7a 306 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 85 5.4E-5 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_17685 27d9b1415386356da6814aa5e04f8f7a 306 Pfam PF13602 Zinc-binding dehydrogenase 184 304 2.7E-18 T 13-10-2018 RAM_17685 27d9b1415386356da6814aa5e04f8f7a 306 SMART SM00829 7 304 1.6E-13 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_32605 6d52db202c54714d7827865fa2aeed1a 465 Gene3D G3DSA:3.30.565.10 300 452 3.4E-28 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_32605 6d52db202c54714d7827865fa2aeed1a 465 Pfam PF00672 HAMP domain 175 222 6.9E-7 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_32605 6d52db202c54714d7827865fa2aeed1a 465 SUPERFAMILY SSF47384 213 295 1.26E-17 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RAM_32605 6d52db202c54714d7827865fa2aeed1a 465 SUPERFAMILY SSF158472 175 222 9.42E-5 T 13-10-2018 RAM_32605 6d52db202c54714d7827865fa2aeed1a 465 SMART SM00304 175 227 3.3E-7 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_32605 6d52db202c54714d7827865fa2aeed1a 465 SMART SM00387 340 452 8.4E-20 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_32605 6d52db202c54714d7827865fa2aeed1a 465 SUPERFAMILY SSF55874 284 451 4.85E-34 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_32605 6d52db202c54714d7827865fa2aeed1a 465 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 341 451 1.1E-14 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_32605 6d52db202c54714d7827865fa2aeed1a 465 PRINTS PR00344 Bacterial sensor protein C-terminal signature 412 430 1.2E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_32605 6d52db202c54714d7827865fa2aeed1a 465 PRINTS PR00344 Bacterial sensor protein C-terminal signature 436 449 1.2E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_32605 6d52db202c54714d7827865fa2aeed1a 465 PRINTS PR00344 Bacterial sensor protein C-terminal signature 377 391 1.2E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_32605 6d52db202c54714d7827865fa2aeed1a 465 Gene3D G3DSA:1.10.287.130 179 294 3.4E-25 T 13-10-2018 RAM_32605 6d52db202c54714d7827865fa2aeed1a 465 Pfam PF00512 His Kinase A (phospho-acceptor) domain 229 293 1.0E-15 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_32605 6d52db202c54714d7827865fa2aeed1a 465 SMART SM00388 228 294 9.9E-19 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_01015 402b25e35e3b22a352ad89fb64b43740 365 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 2 358 1.8E-101 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase RAM_01015 402b25e35e3b22a352ad89fb64b43740 365 Gene3D G3DSA:3.90.1150.10 243 363 1.1E-24 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_01015 402b25e35e3b22a352ad89fb64b43740 365 PIRSF PIRSF000390 1 364 2.5E-99 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase RAM_01015 402b25e35e3b22a352ad89fb64b43740 365 Gene3D G3DSA:3.40.640.10 1 242 4.7E-84 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_01015 402b25e35e3b22a352ad89fb64b43740 365 SUPERFAMILY SSF53383 2 362 1.67E-97 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_08580 3e8c7b9410cfca9736c1d51ba0b3639b 293 Gene3D G3DSA:3.10.450.50 161 285 3.1E-18 T 13-10-2018 RAM_08580 3e8c7b9410cfca9736c1d51ba0b3639b 293 Gene3D G3DSA:3.10.450.50 5 128 1.6E-29 T 13-10-2018 RAM_08580 3e8c7b9410cfca9736c1d51ba0b3639b 293 SUPERFAMILY SSF54427 5 125 2.6E-24 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_08580 3e8c7b9410cfca9736c1d51ba0b3639b 293 Pfam PF12680 SnoaL-like domain 13 115 7.5E-13 T 13-10-2018 IPR037401 SnoaL-like domain RAM_08580 3e8c7b9410cfca9736c1d51ba0b3639b 293 SUPERFAMILY SSF54427 162 284 7.07E-15 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_02905 dd0754bfbfb47c3a571d731297fddc80 215 Pfam PF02585 GlcNAc-PI de-N-acetylase 14 125 1.6E-13 T 13-10-2018 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related Reactome: R-HSA-162710 RAM_02905 dd0754bfbfb47c3a571d731297fddc80 215 Gene3D G3DSA:3.40.50.10320 5 213 4.0E-27 T 13-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 RAM_02905 dd0754bfbfb47c3a571d731297fddc80 215 SUPERFAMILY SSF102588 11 209 1.27E-32 T 13-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 RAM_25770 1b2a14cec3ea58c262c5d99ae9f0bd1d 452 SUPERFAMILY SSF52129 18 191 2.82E-7 T 13-10-2018 IPR029030 Caspase-like domain superfamily RAM_25770 1b2a14cec3ea58c262c5d99ae9f0bd1d 452 Gene3D G3DSA:3.40.50.1460 2 197 4.0E-13 T 13-10-2018 RAM_25770 1b2a14cec3ea58c262c5d99ae9f0bd1d 452 Pfam PF00656 Caspase domain 19 118 2.0E-6 T 13-10-2018 RAM_25770 1b2a14cec3ea58c262c5d99ae9f0bd1d 452 ProSitePatterns PS00018 EF-hand calcium-binding domain. 160 172 - T 13-10-2018 IPR018247 EF-Hand 1, calcium-binding site RAM_23860 22985d1067b5dd1a0c466915c1439ddf 160 Gene3D G3DSA:3.40.50.1820 3 57 5.5E-9 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_23860 22985d1067b5dd1a0c466915c1439ddf 160 SUPERFAMILY SSF53474 15 153 5.48E-20 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_23860 22985d1067b5dd1a0c466915c1439ddf 160 Gene3D G3DSA:3.40.50.1820 58 158 4.9E-15 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_26495 dcfaca195af4742425f5433b6dd9dde5 138 SMART SM00116 11 59 2.8E-7 T 13-10-2018 IPR000644 CBS domain RAM_26495 dcfaca195af4742425f5433b6dd9dde5 138 SMART SM00116 77 124 1.4E-11 T 13-10-2018 IPR000644 CBS domain RAM_26495 dcfaca195af4742425f5433b6dd9dde5 138 Pfam PF00571 CBS domain 70 124 1.2E-11 T 13-10-2018 IPR000644 CBS domain RAM_26495 dcfaca195af4742425f5433b6dd9dde5 138 Pfam PF00571 CBS domain 4 57 2.4E-13 T 13-10-2018 IPR000644 CBS domain RAM_26495 dcfaca195af4742425f5433b6dd9dde5 138 Gene3D G3DSA:3.10.580.10 1 126 3.2E-42 T 13-10-2018 RAM_26495 dcfaca195af4742425f5433b6dd9dde5 138 SUPERFAMILY SSF54631 1 125 1.01E-33 T 13-10-2018 RAM_22580 ecd97e2684633fc2a218d93c43d5faff 410 SUPERFAMILY SSF55347 131 308 1.29E-28 T 13-10-2018 RAM_22580 ecd97e2684633fc2a218d93c43d5faff 410 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 138 215 2.2E-18 T 13-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 RAM_22580 ecd97e2684633fc2a218d93c43d5faff 410 Gene3D G3DSA:3.40.50.720 4 136 1.4E-35 T 13-10-2018 RAM_22580 ecd97e2684633fc2a218d93c43d5faff 410 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 125 1.5E-23 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 RAM_22580 ecd97e2684633fc2a218d93c43d5faff 410 Gene3D G3DSA:3.30.360.10 137 399 1.2E-41 T 13-10-2018 RAM_22580 ecd97e2684633fc2a218d93c43d5faff 410 SUPERFAMILY SSF51735 5 157 3.53E-46 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_18050 81c1f824ebc82fdeb75e7d4aac926640 199 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 56 1.7E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_18050 81c1f824ebc82fdeb75e7d4aac926640 199 ProSitePatterns PS01081 TetR-type HTH domain signature. 24 54 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RAM_18050 81c1f824ebc82fdeb75e7d4aac926640 199 Gene3D G3DSA:1.10.357.10 67 193 1.4E-15 T 13-10-2018 RAM_18050 81c1f824ebc82fdeb75e7d4aac926640 199 SUPERFAMILY SSF48498 79 188 3.24E-16 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_18050 81c1f824ebc82fdeb75e7d4aac926640 199 SUPERFAMILY SSF46689 5 78 1.95E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_18050 81c1f824ebc82fdeb75e7d4aac926640 199 Gene3D G3DSA:1.10.10.60 2 65 1.9E-22 T 13-10-2018 RAM_25035 fb11e9c069aa1e3f6ac83f97253263a9 1066 Pfam PF00809 Pterin binding enzyme 225 461 1.7E-45 T 13-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_25035 fb11e9c069aa1e3f6ac83f97253263a9 1066 TIGRFAM TIGR02082 metH: methionine synthase 1 1065 0.0 T 13-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_25035 fb11e9c069aa1e3f6ac83f97253263a9 1066 Gene3D G3DSA:1.10.1240.10 512 599 6.3E-29 T 13-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_25035 fb11e9c069aa1e3f6ac83f97253263a9 1066 Pfam PF02607 B12 binding domain 523 595 3.5E-24 T 13-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_25035 fb11e9c069aa1e3f6ac83f97253263a9 1066 SUPERFAMILY SSF47644 518 601 1.57E-23 T 13-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_25035 fb11e9c069aa1e3f6ac83f97253263a9 1066 SUPERFAMILY SSF51717 222 493 1.44E-75 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_25035 fb11e9c069aa1e3f6ac83f97253263a9 1066 Pfam PF02574 Homocysteine S-methyltransferase 1 190 1.3E-33 T 13-10-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 RAM_25035 fb11e9c069aa1e3f6ac83f97253263a9 1066 Gene3D G3DSA:3.40.50.280 605 758 1.3E-42 T 13-10-2018 RAM_25035 fb11e9c069aa1e3f6ac83f97253263a9 1066 SUPERFAMILY SSF56507 783 1066 2.22E-85 T 13-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_25035 fb11e9c069aa1e3f6ac83f97253263a9 1066 SMART SM01018 520 602 6.8E-39 T 13-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_25035 fb11e9c069aa1e3f6ac83f97253263a9 1066 Gene3D G3DSA:1.10.288.10 808 868 1.1E-45 T 13-10-2018 RAM_25035 fb11e9c069aa1e3f6ac83f97253263a9 1066 Gene3D G3DSA:3.20.20.330 1 201 1.4E-50 T 13-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 RAM_25035 fb11e9c069aa1e3f6ac83f97253263a9 1066 PIRSF PIRSF000381 1 1066 0.0 T 13-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_25035 fb11e9c069aa1e3f6ac83f97253263a9 1066 SUPERFAMILY SSF52242 602 739 1.31E-38 T 13-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 RAM_25035 fb11e9c069aa1e3f6ac83f97253263a9 1066 SUPERFAMILY SSF82282 1 264 1.83E-66 T 13-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 RAM_25035 fb11e9c069aa1e3f6ac83f97253263a9 1066 Gene3D G3DSA:3.10.196.10 792 1065 1.1E-45 T 13-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_25035 fb11e9c069aa1e3f6ac83f97253263a9 1066 Pfam PF02965 Vitamin B12 dependent methionine synthase, activation domain 856 1065 2.3E-30 T 13-10-2018 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_25035 fb11e9c069aa1e3f6ac83f97253263a9 1066 Pfam PF02310 B12 binding domain 608 726 4.4E-19 T 13-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 RAM_25035 fb11e9c069aa1e3f6ac83f97253263a9 1066 Gene3D G3DSA:3.20.20.20 211 507 3.2E-97 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_40855 7af168b9edbd352116f1724ea268b6e6 1235 SUPERFAMILY SSF52777 116 357 1.29E-54 T 13-10-2018 RAM_40855 7af168b9edbd352116f1724ea268b6e6 1235 Pfam PF00676 Dehydrogenase E1 component 509 832 4.8E-59 T 13-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 RAM_40855 7af168b9edbd352116f1724ea268b6e6 1235 Pfam PF02779 Transketolase, pyrimidine binding domain 894 1087 3.6E-52 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain RAM_40855 7af168b9edbd352116f1724ea268b6e6 1235 Gene3D G3DSA:3.40.50.12470 853 1110 8.0E-156 T 13-10-2018 RAM_40855 7af168b9edbd352116f1724ea268b6e6 1235 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 1092 1234 3.4E-43 T 13-10-2018 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 RAM_40855 7af168b9edbd352116f1724ea268b6e6 1235 SMART SM00861 894 1087 1.3E-48 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain RAM_40855 7af168b9edbd352116f1724ea268b6e6 1235 Gene3D G3DSA:3.40.50.11610 1030 1232 8.0E-156 T 13-10-2018 RAM_40855 7af168b9edbd352116f1724ea268b6e6 1235 Gene3D G3DSA:3.40.50.970 468 835 5.2E-143 T 13-10-2018 RAM_40855 7af168b9edbd352116f1724ea268b6e6 1235 PIRSF PIRSF000157 2 1235 0.0 T 13-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 RAM_40855 7af168b9edbd352116f1724ea268b6e6 1235 SUPERFAMILY SSF52518 881 1094 3.34E-44 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_40855 7af168b9edbd352116f1724ea268b6e6 1235 Gene3D G3DSA:1.10.287.1150 386 467 5.5E-28 T 13-10-2018 RAM_40855 7af168b9edbd352116f1724ea268b6e6 1235 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 123 357 1.7E-54 T 13-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 RAM_40855 7af168b9edbd352116f1724ea268b6e6 1235 Gene3D G3DSA:3.30.559.10 105 365 2.3E-53 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_40855 7af168b9edbd352116f1724ea268b6e6 1235 Pfam PF16078 2-oxoglutarate dehydrogenase N-terminus 10 43 6.5E-12 T 13-10-2018 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 RAM_40855 7af168b9edbd352116f1724ea268b6e6 1235 SUPERFAMILY SSF52518 424 840 1.44E-83 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_40855 7af168b9edbd352116f1724ea268b6e6 1235 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 391 1233 4.7E-298 T 13-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 RAM_34895 97536486b6072b083444d0d620d1f384 296 Pfam PF00296 Luciferase-like monooxygenase 1 251 6.3E-40 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_34895 97536486b6072b083444d0d620d1f384 296 TIGRFAM TIGR03619 F420_Rv2161c: probable F420-dependent oxidoreductase, Rv2161c family 23 271 9.8E-56 T 13-10-2018 IPR019921 Luciferase-like, F420-dependent oxidoreductase, Rv2161c, predicted RAM_34895 97536486b6072b083444d0d620d1f384 296 Gene3D G3DSA:3.20.20.30 1 293 3.1E-58 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_34895 97536486b6072b083444d0d620d1f384 296 SUPERFAMILY SSF51679 1 290 2.75E-53 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_11800 03b481e32a6deb03ad18a89956c95753 655 SUPERFAMILY SSF56112 3 339 1.71E-69 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_11800 03b481e32a6deb03ad18a89956c95753 655 Gene3D G3DSA:3.30.10.20 384 453 6.4E-13 T 13-10-2018 RAM_11800 03b481e32a6deb03ad18a89956c95753 655 Pfam PF00069 Protein kinase domain 4 257 7.5E-42 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_11800 03b481e32a6deb03ad18a89956c95753 655 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 124 136 - T 13-10-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 RAM_11800 03b481e32a6deb03ad18a89956c95753 655 Gene3D G3DSA:3.30.10.20 587 652 2.8E-9 T 13-10-2018 RAM_11800 03b481e32a6deb03ad18a89956c95753 655 SMART SM00220 1 267 5.7E-51 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_11800 03b481e32a6deb03ad18a89956c95753 655 Pfam PF03793 PASTA domain 526 574 3.4E-5 T 13-10-2018 IPR005543 PASTA domain RAM_11800 03b481e32a6deb03ad18a89956c95753 655 Pfam PF03793 PASTA domain 390 451 2.6E-9 T 13-10-2018 IPR005543 PASTA domain RAM_11800 03b481e32a6deb03ad18a89956c95753 655 Pfam PF03793 PASTA domain 588 650 4.3E-9 T 13-10-2018 IPR005543 PASTA domain RAM_11800 03b481e32a6deb03ad18a89956c95753 655 Pfam PF03793 PASTA domain 456 518 5.2E-8 T 13-10-2018 IPR005543 PASTA domain RAM_11800 03b481e32a6deb03ad18a89956c95753 655 Gene3D G3DSA:3.30.10.20 454 519 4.8E-14 T 13-10-2018 RAM_11800 03b481e32a6deb03ad18a89956c95753 655 Gene3D G3DSA:1.10.510.10 86 274 2.2E-47 T 13-10-2018 RAM_11800 03b481e32a6deb03ad18a89956c95753 655 SMART SM00740 520 586 0.0012 T 13-10-2018 IPR005543 PASTA domain RAM_11800 03b481e32a6deb03ad18a89956c95753 655 SMART SM00740 588 655 4.4E-5 T 13-10-2018 IPR005543 PASTA domain RAM_11800 03b481e32a6deb03ad18a89956c95753 655 SMART SM00740 385 451 1.5E-8 T 13-10-2018 IPR005543 PASTA domain RAM_11800 03b481e32a6deb03ad18a89956c95753 655 SMART SM00740 452 518 0.011 T 13-10-2018 IPR005543 PASTA domain RAM_11800 03b481e32a6deb03ad18a89956c95753 655 Gene3D G3DSA:3.30.200.20 1 84 1.0E-24 T 13-10-2018 RAM_11800 03b481e32a6deb03ad18a89956c95753 655 Gene3D G3DSA:3.30.10.20 525 586 7.7E-11 T 13-10-2018 RAM_11800 03b481e32a6deb03ad18a89956c95753 655 SUPERFAMILY SSF54184 588 651 9.03E-5 T 13-10-2018 RAM_25145 8a6a7d25cb11bc2d579bcac56954fbf5 386 Gene3D G3DSA:1.20.1250.20 197 379 3.8E-13 T 13-10-2018 RAM_25145 8a6a7d25cb11bc2d579bcac56954fbf5 386 Gene3D G3DSA:1.20.1250.20 2 196 1.0E-30 T 13-10-2018 RAM_25145 8a6a7d25cb11bc2d579bcac56954fbf5 386 SUPERFAMILY SSF103473 3 372 4.71E-56 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_25145 8a6a7d25cb11bc2d579bcac56954fbf5 386 Pfam PF07690 Major Facilitator Superfamily 9 319 3.0E-39 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_41170 88e6e08fcc459605c909cd9ca166c86f 362 SUPERFAMILY SSF53697 63 349 6.45E-41 T 13-10-2018 RAM_46875 de7f4f488c19cb4c447d6d2d84fa6db2 347 Gene3D G3DSA:1.10.260.40 12 68 1.0E-18 T 13-10-2018 RAM_46875 de7f4f488c19cb4c447d6d2d84fa6db2 347 SMART SM00354 10 80 2.4E-19 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_46875 de7f4f488c19cb4c447d6d2d84fa6db2 347 SUPERFAMILY SSF53822 69 344 3.14E-74 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_46875 de7f4f488c19cb4c447d6d2d84fa6db2 347 Gene3D G3DSA:3.40.50.2300 169 298 1.7E-76 T 13-10-2018 RAM_46875 de7f4f488c19cb4c447d6d2d84fa6db2 347 Gene3D G3DSA:3.40.50.2300 71 315 1.7E-76 T 13-10-2018 RAM_46875 de7f4f488c19cb4c447d6d2d84fa6db2 347 Pfam PF13377 Periplasmic binding protein-like domain 178 338 1.0E-37 T 13-10-2018 RAM_46875 de7f4f488c19cb4c447d6d2d84fa6db2 347 SUPERFAMILY SSF47413 10 68 3.92E-15 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_46875 de7f4f488c19cb4c447d6d2d84fa6db2 347 Pfam PF00356 Bacterial regulatory proteins, lacI family 14 55 7.8E-14 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_02690 79bc2f7e7f6c13759374d2389d798f43 431 SUPERFAMILY SSF140490 326 419 1.96E-35 T 13-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_02690 79bc2f7e7f6c13759374d2389d798f43 431 ProSitePatterns PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 167 182 - T 13-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_02690 79bc2f7e7f6c13759374d2389d798f43 431 SUPERFAMILY SSF142019 7 239 6.02E-86 T 13-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_02690 79bc2f7e7f6c13759374d2389d798f43 431 Gene3D G3DSA:1.20.1440.230 327 426 5.8E-33 T 13-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_02690 79bc2f7e7f6c13759374d2389d798f43 431 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 48 217 1.6E-47 T 13-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_02690 79bc2f7e7f6c13759374d2389d798f43 431 Gene3D G3DSA:3.40.50.11540 53 231 3.8E-77 T 13-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_02690 79bc2f7e7f6c13759374d2389d798f43 431 Pfam PF10531 SLBB domain 243 290 4.4E-10 T 13-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_02690 79bc2f7e7f6c13759374d2389d798f43 431 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 332 412 8.2E-33 T 13-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_02690 79bc2f7e7f6c13759374d2389d798f43 431 Gene3D G3DSA:3.10.20.600 232 325 6.2E-30 T 13-10-2018 RAM_02690 79bc2f7e7f6c13759374d2389d798f43 431 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 341 352 - T 13-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_02690 79bc2f7e7f6c13759374d2389d798f43 431 SUPERFAMILY SSF142984 241 323 6.54E-23 T 13-10-2018 RAM_02690 79bc2f7e7f6c13759374d2389d798f43 431 TIGRFAM TIGR01959 nuoF_fam: NADH oxidoreductase (quinone), F subunit 9 412 5.7E-188 T 13-10-2018 IPR011537 NADH ubiquinone oxidoreductase, F subunit GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_02690 79bc2f7e7f6c13759374d2389d798f43 431 SMART SM00928 328 373 2.1E-24 T 13-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_39385 ef5eeb46e3e56e4d8a3d8155a1dc1013 392 Pfam PF13406 Transglycosylase SLT domain 186 243 2.5E-7 T 13-10-2018 IPR031304 Transglycosylase SLT domain 2 RAM_39385 ef5eeb46e3e56e4d8a3d8155a1dc1013 392 SUPERFAMILY SSF53955 98 269 1.57E-36 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily RAM_39385 ef5eeb46e3e56e4d8a3d8155a1dc1013 392 Gene3D G3DSA:1.10.530.10 108 275 6.1E-9 T 13-10-2018 RAM_03720 214ec121821a9e5b8423f37d618b520f 294 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 234 243 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RAM_03720 214ec121821a9e5b8423f37d618b520f 294 PRINTS PR00359 B-class P450 signature 83 99 1.9E-7 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03720 214ec121821a9e5b8423f37d618b520f 294 PRINTS PR00359 B-class P450 signature 100 115 1.9E-7 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03720 214ec121821a9e5b8423f37d618b520f 294 PRINTS PR00359 B-class P450 signature 232 241 1.9E-7 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03720 214ec121821a9e5b8423f37d618b520f 294 PRINTS PR00359 B-class P450 signature 41 52 1.9E-7 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03720 214ec121821a9e5b8423f37d618b520f 294 PRINTS PR00359 B-class P450 signature 241 252 1.9E-7 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03720 214ec121821a9e5b8423f37d618b520f 294 SUPERFAMILY SSF48264 8 289 2.1E-20 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_03720 214ec121821a9e5b8423f37d618b520f 294 Gene3D G3DSA:1.10.630.10 2 209 8.9E-18 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_03720 214ec121821a9e5b8423f37d618b520f 294 Gene3D G3DSA:1.10.630.10 210 293 4.5E-9 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_14040 457a24e839d091ba0fa2b29245b5c0e3 449 SUPERFAMILY SSF53182 169 403 6.15E-20 T 13-10-2018 IPR036440 Peptidase C15, pyroglutamyl peptidase I-like superfamily MetaCyc: PWY-7942 RAM_26790 12795ccc67231f47d2aeb927cd2ad2de 341 Gene3D G3DSA:3.30.70.270 75 162 2.4E-25 T 13-10-2018 RAM_26790 12795ccc67231f47d2aeb927cd2ad2de 341 Gene3D G3DSA:3.30.1490.100 238 341 2.3E-19 T 13-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 RAM_26790 12795ccc67231f47d2aeb927cd2ad2de 341 Gene3D G3DSA:1.10.150.20 163 234 5.0E-28 T 13-10-2018 RAM_26790 12795ccc67231f47d2aeb927cd2ad2de 341 Gene3D G3DSA:2.30.40.20 12 74 4.3E-29 T 13-10-2018 RAM_26790 12795ccc67231f47d2aeb927cd2ad2de 341 SUPERFAMILY SSF100879 238 335 5.69E-21 T 13-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 RAM_26790 12795ccc67231f47d2aeb927cd2ad2de 341 SUPERFAMILY SSF56672 2 233 1.6E-68 T 13-10-2018 RAM_26790 12795ccc67231f47d2aeb927cd2ad2de 341 Hamap MF_01113 DNA polymerase IV [dinB]. 1 339 28.581 T 13-10-2018 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 RAM_26790 12795ccc67231f47d2aeb927cd2ad2de 341 Pfam PF11799 impB/mucB/samB family C-terminal domain 240 335 3.2E-12 T 13-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 RAM_26790 12795ccc67231f47d2aeb927cd2ad2de 341 Pfam PF00817 impB/mucB/samB family 7 150 2.2E-38 T 13-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 RAM_01385 3f7c027b4441dad1f12e68ceac45c0fd 659 Pfam PF13193 AMP-binding enzyme C-terminal domain 568 620 1.1E-5 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_01385 3f7c027b4441dad1f12e68ceac45c0fd 659 ProSitePatterns PS00455 Putative AMP-binding domain signature. 275 286 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_01385 3f7c027b4441dad1f12e68ceac45c0fd 659 SUPERFAMILY SSF56801 41 636 6.67E-125 T 13-10-2018 RAM_01385 3f7c027b4441dad1f12e68ceac45c0fd 659 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 42 97 4.5E-11 T 13-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 RAM_01385 3f7c027b4441dad1f12e68ceac45c0fd 659 Gene3D G3DSA:3.40.50.12780 83 527 9.4E-70 T 13-10-2018 RAM_01385 3f7c027b4441dad1f12e68ceac45c0fd 659 TIGRFAM TIGR01217 ac_ac_CoA_syn: acetoacetate-CoA ligase 8 656 5.5E-239 T 13-10-2018 IPR005914 Acetoacetyl-CoA synthase GO:0006629|GO:0030729 KEGG: 00280+6.2.1.16|KEGG: 00650+6.2.1.16|Reactome: R-HSA-77111 RAM_01385 3f7c027b4441dad1f12e68ceac45c0fd 659 Pfam PF00501 AMP-binding enzyme 105 532 3.4E-53 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_01385 3f7c027b4441dad1f12e68ceac45c0fd 659 Gene3D G3DSA:3.30.300.30 530 643 4.3E-12 T 13-10-2018 RAM_44665 00b0a3a5cfe9a9f67de69b877d5be03d 248 SUPERFAMILY SSF53474 5 242 4.86E-48 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_44665 00b0a3a5cfe9a9f67de69b877d5be03d 248 Gene3D G3DSA:3.40.50.1820 1 242 1.1E-50 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_44665 00b0a3a5cfe9a9f67de69b877d5be03d 248 Pfam PF12697 Alpha/beta hydrolase family 11 233 1.3E-17 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_36815 d95d9ecf7ffe1239b792a8d7002fbdb5 159 SUPERFAMILY SSF54593 4 144 7.19E-16 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_36815 d95d9ecf7ffe1239b792a8d7002fbdb5 159 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 16 121 3.3E-16 T 13-10-2018 RAM_36815 d95d9ecf7ffe1239b792a8d7002fbdb5 159 Gene3D G3DSA:3.10.180.10 5 142 7.7E-17 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_06660 365f892fd37895fac11ee581a66eaaaa 163 SUPERFAMILY SSF46785 8 147 2.14E-35 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_06660 365f892fd37895fac11ee581a66eaaaa 163 Pfam PF01638 HxlR-like helix-turn-helix 20 107 3.5E-17 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type RAM_06660 365f892fd37895fac11ee581a66eaaaa 163 Gene3D G3DSA:1.10.10.10 2 152 3.3E-45 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_37125 c7f0e2fee3fd9e4f1673a3813d3e9060 77 SUPERFAMILY SSF47203 1 71 9.18E-20 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_37125 c7f0e2fee3fd9e4f1673a3813d3e9060 77 Gene3D G3DSA:1.20.140.10 1 76 1.3E-19 T 13-10-2018 RAM_37125 c7f0e2fee3fd9e4f1673a3813d3e9060 77 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 2 69 5.3E-18 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_20040 9534a29dedebd0f1a260958bc1bb83ea 702 SUPERFAMILY SSF49313 470 554 8.95E-10 T 13-10-2018 IPR015919 Cadherin-like superfamily GO:0005509|GO:0016020 RAM_20040 9534a29dedebd0f1a260958bc1bb83ea 702 Pfam PF01229 Glycosyl hydrolases family 39 171 234 9.2E-5 T 13-10-2018 IPR000514 Glycoside hydrolase, family 39 GO:0004553|GO:0005975 Reactome: R-HSA-2024096|Reactome: R-HSA-2024101|Reactome: R-HSA-2206302 RAM_20040 9534a29dedebd0f1a260958bc1bb83ea 702 SUPERFAMILY SSF50370 561 699 2.93E-31 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_20040 9534a29dedebd0f1a260958bc1bb83ea 702 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 599 687 5.4E-15 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_20040 9534a29dedebd0f1a260958bc1bb83ea 702 Gene3D G3DSA:3.20.20.80 57 346 6.2E-22 T 13-10-2018 RAM_20040 9534a29dedebd0f1a260958bc1bb83ea 702 Gene3D G3DSA:2.60.40.10 467 554 2.3E-19 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_20040 9534a29dedebd0f1a260958bc1bb83ea 702 SMART SM00458 564 700 2.4E-7 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_20040 9534a29dedebd0f1a260958bc1bb83ea 702 Pfam PF05345 Putative Ig domain 503 542 7.0E-10 T 13-10-2018 IPR008009 Putative Ig RAM_20040 9534a29dedebd0f1a260958bc1bb83ea 702 SUPERFAMILY SSF51445 69 352 2.94E-22 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_20040 9534a29dedebd0f1a260958bc1bb83ea 702 Gene3D G3DSA:2.80.10.50 564 701 5.3E-30 T 13-10-2018 RAM_43455 3a243a8848395132f3ddaf3a6fc1cd65 369 Pfam PF01471 Putative peptidoglycan binding domain 138 187 2.0E-10 T 13-10-2018 IPR002477 Peptidoglycan binding-like RAM_43455 3a243a8848395132f3ddaf3a6fc1cd65 369 SUPERFAMILY SSF47090 136 188 1.44E-9 T 13-10-2018 IPR036365 PGBD-like superfamily RAM_43455 3a243a8848395132f3ddaf3a6fc1cd65 369 Gene3D G3DSA:2.40.420.20 296 368 2.8E-9 T 13-10-2018 RAM_43455 3a243a8848395132f3ddaf3a6fc1cd65 369 Gene3D G3DSA:1.10.101.10 129 202 2.0E-8 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 RAM_35930 a1007aa99b9467687eac73c80f7a06ef 407 Pfam PF08281 Sigma-70, region 4 109 160 1.4E-8 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_35930 a1007aa99b9467687eac73c80f7a06ef 407 SUPERFAMILY SSF48452 308 398 1.54E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_35930 a1007aa99b9467687eac73c80f7a06ef 407 Gene3D G3DSA:1.25.40.10 301 406 2.5E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_35930 a1007aa99b9467687eac73c80f7a06ef 407 Gene3D G3DSA:1.10.10.10 96 164 7.6E-6 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_35930 a1007aa99b9467687eac73c80f7a06ef 407 Gene3D G3DSA:1.10.1740.10 2 74 4.9E-5 T 13-10-2018 RAM_35930 a1007aa99b9467687eac73c80f7a06ef 407 SUPERFAMILY SSF88946 5 83 1.29E-9 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_35930 a1007aa99b9467687eac73c80f7a06ef 407 Pfam PF04542 Sigma-70 region 2 18 78 3.1E-8 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_35930 a1007aa99b9467687eac73c80f7a06ef 407 SUPERFAMILY SSF88659 102 162 2.99E-9 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_03715 255f0024a567f8eb331b4758aa428e0c 444 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 232 247 3.0E-14 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAM_03715 255f0024a567f8eb331b4758aa428e0c 444 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 95 109 3.0E-14 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAM_03715 255f0024a567f8eb331b4758aa428e0c 444 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 172 191 3.0E-14 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAM_03715 255f0024a567f8eb331b4758aa428e0c 444 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 5 441 7.7E-179 T 13-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAM_03715 255f0024a567f8eb331b4758aa428e0c 444 SUPERFAMILY SSF53738 155 254 1.33E-28 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAM_03715 255f0024a567f8eb331b4758aa428e0c 444 SUPERFAMILY SSF55957 356 442 3.14E-21 T 13-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAM_03715 255f0024a567f8eb331b4758aa428e0c 444 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 157 252 2.9E-18 T 13-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAM_03715 255f0024a567f8eb331b4758aa428e0c 444 Gene3D G3DSA:3.40.120.10 172 361 4.5E-68 T 13-10-2018 RAM_03715 255f0024a567f8eb331b4758aa428e0c 444 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 96 105 - T 13-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAM_03715 255f0024a567f8eb331b4758aa428e0c 444 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 1 443 44.284 T 13-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAM_03715 255f0024a567f8eb331b4758aa428e0c 444 SUPERFAMILY SSF53738 256 363 4.71E-29 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAM_03715 255f0024a567f8eb331b4758aa428e0c 444 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 372 437 4.5E-13 T 13-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAM_03715 255f0024a567f8eb331b4758aa428e0c 444 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 3 134 9.7E-41 T 13-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAM_03715 255f0024a567f8eb331b4758aa428e0c 444 Gene3D G3DSA:3.40.120.10 255 338 4.5E-68 T 13-10-2018 RAM_03715 255f0024a567f8eb331b4758aa428e0c 444 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 256 366 1.5E-32 T 13-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAM_03715 255f0024a567f8eb331b4758aa428e0c 444 Gene3D G3DSA:3.40.120.10 3 154 2.9E-46 T 13-10-2018 RAM_03715 255f0024a567f8eb331b4758aa428e0c 444 Gene3D G3DSA:3.30.310.50 369 444 6.2E-25 T 13-10-2018 RAM_03715 255f0024a567f8eb331b4758aa428e0c 444 SUPERFAMILY SSF53738 4 179 7.06E-46 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAM_25275 53cf67694d7bc0b390239373786f44c3 308 SUPERFAMILY SSF53850 94 300 8.84E-32 T 13-10-2018 RAM_25275 53cf67694d7bc0b390239373786f44c3 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 3.4E-5 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_25275 53cf67694d7bc0b390239373786f44c3 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 3.4E-5 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_25275 53cf67694d7bc0b390239373786f44c3 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 3.4E-5 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_25275 53cf67694d7bc0b390239373786f44c3 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 2.7E-17 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_25275 53cf67694d7bc0b390239373786f44c3 308 Gene3D G3DSA:3.40.190.10 98 279 5.1E-34 T 13-10-2018 RAM_25275 53cf67694d7bc0b390239373786f44c3 308 Pfam PF03466 LysR substrate binding domain 94 296 1.2E-33 T 13-10-2018 IPR005119 LysR, substrate-binding RAM_25275 53cf67694d7bc0b390239373786f44c3 308 Gene3D G3DSA:3.40.190.10 170 270 5.1E-34 T 13-10-2018 RAM_25275 53cf67694d7bc0b390239373786f44c3 308 Gene3D G3DSA:1.10.10.10 3 94 9.1E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_25275 53cf67694d7bc0b390239373786f44c3 308 SUPERFAMILY SSF46785 3 81 3.02E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_23345 c9ac831eebff3e4fdd43d8a7be4cacf3 763 Gene3D G3DSA:3.30.365.10 4 762 6.3E-201 T 13-10-2018 RAM_23345 c9ac831eebff3e4fdd43d8a7be4cacf3 763 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 34 138 2.6E-29 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RAM_23345 c9ac831eebff3e4fdd43d8a7be4cacf3 763 SUPERFAMILY SSF56003 131 761 5.63E-151 T 13-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 RAM_23345 c9ac831eebff3e4fdd43d8a7be4cacf3 763 SUPERFAMILY SSF54665 18 140 6.41E-40 T 13-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily RAM_23345 c9ac831eebff3e4fdd43d8a7be4cacf3 763 TIGRFAM TIGR03196 pucD: xanthine dehydrogenase D subunit 19 760 1.4E-249 T 13-10-2018 IPR017609 Xanthine dehydrogenase D subunit KEGG: 00230+1.17.1.4|MetaCyc: PWY-5497|MetaCyc: PWY-5695|MetaCyc: PWY-6538|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-6999 RAM_23345 c9ac831eebff3e4fdd43d8a7be4cacf3 763 SMART SM01008 33 139 4.5E-45 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RAM_23345 c9ac831eebff3e4fdd43d8a7be4cacf3 763 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 162 705 1.2E-137 T 13-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RAM_40275 a321450e50021dfc3f8aea6ca50f1c2d 150 Gene3D G3DSA:3.30.565.10 11 139 3.5E-22 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_40275 a321450e50021dfc3f8aea6ca50f1c2d 150 Pfam PF13581 Histidine kinase-like ATPase domain 27 115 1.1E-8 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_40275 a321450e50021dfc3f8aea6ca50f1c2d 150 SUPERFAMILY SSF55874 44 132 7.03E-9 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_16660 c4e03b7ed78da25742e9e6168f9da82a 311 Pfam PF01370 NAD dependent epimerase/dehydratase family 8 207 4.3E-9 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 RAM_16660 c4e03b7ed78da25742e9e6168f9da82a 311 SUPERFAMILY SSF51735 7 307 1.87E-33 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_16660 c4e03b7ed78da25742e9e6168f9da82a 311 Gene3D G3DSA:3.40.50.720 2 308 7.8E-28 T 13-10-2018 RAM_06795 4bbf2026d7be31f934055f6f6b203bfb 269 Gene3D G3DSA:3.30.110.70 46 128 1.1E-9 T 13-10-2018 RAM_06795 4bbf2026d7be31f934055f6f6b203bfb 269 Pfam PF01906 Putative heavy-metal-binding 68 125 3.7E-8 T 13-10-2018 IPR002765 Uncharacterised protein family UPF0145 RAM_06795 4bbf2026d7be31f934055f6f6b203bfb 269 SUPERFAMILY SSF117782 46 127 1.44E-11 T 13-10-2018 IPR035439 UPF0145 domain superfamily RAM_33520 eea402511ae92a4725575f9ae3f9855d 267 Gene3D G3DSA:3.40.50.1980 129 267 6.2E-25 T 13-10-2018 RAM_33520 eea402511ae92a4725575f9ae3f9855d 267 SUPERFAMILY SSF53807 2 266 3.41E-34 T 13-10-2018 RAM_33520 eea402511ae92a4725575f9ae3f9855d 267 Gene3D G3DSA:3.40.50.1980 1 128 1.2E-19 T 13-10-2018 RAM_33520 eea402511ae92a4725575f9ae3f9855d 267 Pfam PF01497 Periplasmic binding protein 4 244 7.4E-25 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain RAM_00030 12fcd946a2ca88456fe5d6425cedd107 655 PRINTS PR00418 DNA topoisomerase II family signature 501 517 1.4E-68 T 13-10-2018 RAM_00030 12fcd946a2ca88456fe5d6425cedd107 655 PRINTS PR00418 DNA topoisomerase II family signature 72 85 1.4E-68 T 13-10-2018 RAM_00030 12fcd946a2ca88456fe5d6425cedd107 655 PRINTS PR00418 DNA topoisomerase II family signature 539 551 1.4E-68 T 13-10-2018 RAM_00030 12fcd946a2ca88456fe5d6425cedd107 655 PRINTS PR00418 DNA topoisomerase II family signature 283 296 1.4E-68 T 13-10-2018 RAM_00030 12fcd946a2ca88456fe5d6425cedd107 655 PRINTS PR00418 DNA topoisomerase II family signature 115 129 1.4E-68 T 13-10-2018 RAM_00030 12fcd946a2ca88456fe5d6425cedd107 655 PRINTS PR00418 DNA topoisomerase II family signature 435 449 1.4E-68 T 13-10-2018 RAM_00030 12fcd946a2ca88456fe5d6425cedd107 655 PRINTS PR00418 DNA topoisomerase II family signature 587 603 1.4E-68 T 13-10-2018 RAM_00030 12fcd946a2ca88456fe5d6425cedd107 655 PRINTS PR00418 DNA topoisomerase II family signature 519 536 1.4E-68 T 13-10-2018 RAM_00030 12fcd946a2ca88456fe5d6425cedd107 655 PRINTS PR00418 DNA topoisomerase II family signature 37 52 1.4E-68 T 13-10-2018 RAM_00030 12fcd946a2ca88456fe5d6425cedd107 655 PRINTS PR01159 DNA gyrase subunit B signature 485 494 1.0E-72 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAM_00030 12fcd946a2ca88456fe5d6425cedd107 655 PRINTS PR01159 DNA gyrase subunit B signature 375 389 1.0E-72 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAM_00030 12fcd946a2ca88456fe5d6425cedd107 655 PRINTS PR01159 DNA gyrase subunit B signature 608 620 1.0E-72 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAM_00030 12fcd946a2ca88456fe5d6425cedd107 655 PRINTS PR01159 DNA gyrase subunit B signature 327 343 1.0E-72 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAM_00030 12fcd946a2ca88456fe5d6425cedd107 655 PRINTS PR01159 DNA gyrase subunit B signature 181 196 1.0E-72 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAM_00030 12fcd946a2ca88456fe5d6425cedd107 655 PRINTS PR01159 DNA gyrase subunit B signature 196 209 1.0E-72 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAM_00030 12fcd946a2ca88456fe5d6425cedd107 655 PRINTS PR01159 DNA gyrase subunit B signature 235 257 1.0E-72 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAM_00030 12fcd946a2ca88456fe5d6425cedd107 655 PRINTS PR01159 DNA gyrase subunit B signature 624 640 1.0E-72 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAM_00030 12fcd946a2ca88456fe5d6425cedd107 655 PRINTS PR01159 DNA gyrase subunit B signature 389 409 1.0E-72 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAM_00030 12fcd946a2ca88456fe5d6425cedd107 655 PRINTS PR01159 DNA gyrase subunit B signature 8 18 1.0E-72 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAM_00030 12fcd946a2ca88456fe5d6425cedd107 655 SUPERFAMILY SSF54211 236 406 1.23E-59 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RAM_00030 12fcd946a2ca88456fe5d6425cedd107 655 SUPERFAMILY SSF55874 7 211 7.86E-69 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_00030 12fcd946a2ca88456fe5d6425cedd107 655 Gene3D G3DSA:3.30.565.10 4 221 3.7E-84 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_00030 12fcd946a2ca88456fe5d6425cedd107 655 SMART SM00387 33 176 2.7E-26 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_00030 12fcd946a2ca88456fe5d6425cedd107 655 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 8 655 8.5E-287 T 13-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RAM_00030 12fcd946a2ca88456fe5d6425cedd107 655 Pfam PF01751 Toprim domain 434 544 3.0E-16 T 13-10-2018 IPR006171 TOPRIM domain RAM_00030 12fcd946a2ca88456fe5d6425cedd107 655 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 35 173 2.5E-21 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_00030 12fcd946a2ca88456fe5d6425cedd107 655 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 586 643 3.9E-27 T 13-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAM_00030 12fcd946a2ca88456fe5d6425cedd107 655 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 5 655 91.396 T 13-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RAM_00030 12fcd946a2ca88456fe5d6425cedd107 655 SMART SM00433 37 648 0.0 T 13-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RAM_00030 12fcd946a2ca88456fe5d6425cedd107 655 SUPERFAMILY SSF56719 409 650 4.71E-81 T 13-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 RAM_00030 12fcd946a2ca88456fe5d6425cedd107 655 ProSitePatterns PS00177 DNA topoisomerase II signature. 437 445 - T 13-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RAM_00030 12fcd946a2ca88456fe5d6425cedd107 655 Gene3D G3DSA:3.30.230.10 235 407 6.9E-74 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RAM_00030 12fcd946a2ca88456fe5d6425cedd107 655 Gene3D G3DSA:3.40.50.670 413 655 1.3E-97 T 13-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RAM_00030 12fcd946a2ca88456fe5d6425cedd107 655 Pfam PF00204 DNA gyrase B 236 405 5.1E-62 T 13-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RAM_13350 a1ea11aa94a8f65d3b1f7c6a858f4337 366 Gene3D G3DSA:3.40.50.1820 46 363 5.3E-86 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_13350 a1ea11aa94a8f65d3b1f7c6a858f4337 366 SUPERFAMILY SSF53474 84 340 1.15E-68 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_13350 a1ea11aa94a8f65d3b1f7c6a858f4337 366 Pfam PF07859 alpha/beta hydrolase fold 122 328 6.8E-69 T 13-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 RAM_13350 a1ea11aa94a8f65d3b1f7c6a858f4337 366 ProSitePatterns PS01173 Lipolytic enzymes "G-D-X-G" family, putative histidine active site. 122 138 - T 13-10-2018 IPR002168 Lipase, GDXG, putative histidine active site GO:0016787 Reactome: R-HSA-163560 RAM_41835 90a5408d028e9bd254a763a5c73618de 143 ProSitePatterns PS00501 Signal peptidases I serine active site. 29 36 - T 13-10-2018 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 RAM_41835 90a5408d028e9bd254a763a5c73618de 143 Pfam PF10502 Signal peptidase, peptidase S26 100 137 1.0E-4 T 13-10-2018 IPR019533 Peptidase S26 RAM_41835 90a5408d028e9bd254a763a5c73618de 143 Pfam PF00717 Peptidase S24-like 26 86 2.6E-11 T 13-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C RAM_41835 90a5408d028e9bd254a763a5c73618de 143 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 20 36 8.8E-10 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RAM_41835 90a5408d028e9bd254a763a5c73618de 143 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 103 122 8.8E-10 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RAM_41835 90a5408d028e9bd254a763a5c73618de 143 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 74 86 8.8E-10 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RAM_41835 90a5408d028e9bd254a763a5c73618de 143 Gene3D G3DSA:2.10.109.10 26 84 8.1E-9 T 13-10-2018 RAM_41835 90a5408d028e9bd254a763a5c73618de 143 Gene3D G3DSA:2.10.109.10 91 142 3.4E-10 T 13-10-2018 RAM_41835 90a5408d028e9bd254a763a5c73618de 143 SUPERFAMILY SSF51306 24 138 4.32E-28 T 13-10-2018 IPR036286 LexA/Signal peptidase-like superfamily RAM_20560 53acfaa41a37c3139268791ce729310f 3338 Pfam PF13193 AMP-binding enzyme C-terminal domain 1934 2004 1.9E-11 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_20560 53acfaa41a37c3139268791ce729310f 3338 Pfam PF13193 AMP-binding enzyme C-terminal domain 2911 2974 6.8E-10 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_20560 53acfaa41a37c3139268791ce729310f 3338 Pfam PF13193 AMP-binding enzyme C-terminal domain 873 949 3.8E-9 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_20560 53acfaa41a37c3139268791ce729310f 3338 ProSitePatterns PS00455 Putative AMP-binding domain signature. 606 617 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_20560 53acfaa41a37c3139268791ce729310f 3338 SMART SM00824 Thioesterase 3091 3330 0.0012 T 13-10-2018 IPR020802 Polyketide synthase, thioesterase domain GO:0009058|GO:0016788 RAM_20560 53acfaa41a37c3139268791ce729310f 3338 Gene3D G3DSA:3.40.50.12780 2683 2897 2.8E-39 T 13-10-2018 RAM_20560 53acfaa41a37c3139268791ce729310f 3338 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1668 1679 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_20560 53acfaa41a37c3139268791ce729310f 3338 Gene3D G3DSA:3.30.300.30 2900 2986 3.1E-16 T 13-10-2018 RAM_20560 53acfaa41a37c3139268791ce729310f 3338 SUPERFAMILY SSF52777 1074 1272 1.22E-43 T 13-10-2018 RAM_20560 53acfaa41a37c3139268791ce729310f 3338 Gene3D G3DSA:3.30.559.30 1258 1513 4.0E-134 T 13-10-2018 RAM_20560 53acfaa41a37c3139268791ce729310f 3338 SMART SM00823 Phosphopantetheine attachment site 974 1042 0.0016 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_20560 53acfaa41a37c3139268791ce729310f 3338 SMART SM00823 Phosphopantetheine attachment site 2997 3065 0.0016 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_20560 53acfaa41a37c3139268791ce729310f 3338 SMART SM00823 Phosphopantetheine attachment site 2029 2098 0.0023 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_20560 53acfaa41a37c3139268791ce729310f 3338 SUPERFAMILY SSF52777 2294 2543 7.56E-55 T 13-10-2018 RAM_20560 53acfaa41a37c3139268791ce729310f 3338 Pfam PF00550 Phosphopantetheine attachment site 977 1037 8.6E-12 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_20560 53acfaa41a37c3139268791ce729310f 3338 Pfam PF00550 Phosphopantetheine attachment site 2999 3060 7.7E-11 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_20560 53acfaa41a37c3139268791ce729310f 3338 Pfam PF00550 Phosphopantetheine attachment site 2031 2093 2.3E-13 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_20560 53acfaa41a37c3139268791ce729310f 3338 Gene3D G3DSA:3.30.559.10 2114 2482 6.2E-146 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_20560 53acfaa41a37c3139268791ce729310f 3338 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1553 1950 1.6E-113 T 13-10-2018 IPR010071 Amino acid adenylation domain RAM_20560 53acfaa41a37c3139268791ce729310f 3338 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 484 889 1.1E-112 T 13-10-2018 IPR010071 Amino acid adenylation domain RAM_20560 53acfaa41a37c3139268791ce729310f 3338 Gene3D G3DSA:3.30.300.30 860 963 1.8E-30 T 13-10-2018 RAM_20560 53acfaa41a37c3139268791ce729310f 3338 Gene3D G3DSA:3.40.50.12780 1523 1920 1.0E-113 T 13-10-2018 RAM_20560 53acfaa41a37c3139268791ce729310f 3338 Gene3D G3DSA:3.40.50.12780 454 859 1.2E-111 T 13-10-2018 RAM_20560 53acfaa41a37c3139268791ce729310f 3338 Gene3D G3DSA:3.30.559.10 1081 1449 4.0E-134 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_20560 53acfaa41a37c3139268791ce729310f 3338 Gene3D G3DSA:3.30.559.30 2290 2540 6.2E-146 T 13-10-2018 RAM_20560 53acfaa41a37c3139268791ce729310f 3338 Pfam PF00975 Thioesterase domain 3089 3325 2.2E-26 T 13-10-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 RAM_20560 53acfaa41a37c3139268791ce729310f 3338 SUPERFAMILY SSF47336 2023 2094 1.24E-18 T 13-10-2018 IPR036736 ACP-like superfamily RAM_20560 53acfaa41a37c3139268791ce729310f 3338 SUPERFAMILY SSF52777 193 424 5.23E-34 T 13-10-2018 RAM_20560 53acfaa41a37c3139268791ce729310f 3338 SUPERFAMILY SSF52777 2115 2285 9.67E-49 T 13-10-2018 RAM_20560 53acfaa41a37c3139268791ce729310f 3338 Gene3D G3DSA:3.30.559.30 207 432 4.2E-53 T 13-10-2018 RAM_20560 53acfaa41a37c3139268791ce729310f 3338 SUPERFAMILY SSF53474 3070 3330 3.44E-58 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_20560 53acfaa41a37c3139268791ce729310f 3338 Pfam PF00668 Condensation domain 7 438 1.9E-58 T 13-10-2018 IPR001242 Condensation domain RAM_20560 53acfaa41a37c3139268791ce729310f 3338 Pfam PF00668 Condensation domain 2112 2552 4.3E-85 T 13-10-2018 IPR001242 Condensation domain RAM_20560 53acfaa41a37c3139268791ce729310f 3338 Pfam PF00668 Condensation domain 1076 1514 1.7E-86 T 13-10-2018 IPR001242 Condensation domain RAM_20560 53acfaa41a37c3139268791ce729310f 3338 Gene3D G3DSA:1.10.1200.10 2018 2100 2.6E-26 T 13-10-2018 IPR036736 ACP-like superfamily RAM_20560 53acfaa41a37c3139268791ce729310f 3338 Gene3D G3DSA:1.10.1200.10 964 1042 2.0E-21 T 13-10-2018 IPR036736 ACP-like superfamily RAM_20560 53acfaa41a37c3139268791ce729310f 3338 SUPERFAMILY SSF52777 10 176 7.67E-39 T 13-10-2018 RAM_20560 53acfaa41a37c3139268791ce729310f 3338 SUPERFAMILY SSF56801 459 987 2.75E-133 T 13-10-2018 RAM_20560 53acfaa41a37c3139268791ce729310f 3338 Gene3D G3DSA:3.40.50.1820 2987 3332 8.2E-100 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_20560 53acfaa41a37c3139268791ce729310f 3338 SUPERFAMILY SSF47336 2991 3059 1.07E-13 T 13-10-2018 IPR036736 ACP-like superfamily RAM_20560 53acfaa41a37c3139268791ce729310f 3338 SUPERFAMILY SSF47336 968 1038 1.83E-16 T 13-10-2018 IPR036736 ACP-like superfamily RAM_20560 53acfaa41a37c3139268791ce729310f 3338 Pfam PF00501 AMP-binding enzyme 2572 2637 1.6E-5 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_20560 53acfaa41a37c3139268791ce729310f 3338 Pfam PF00501 AMP-binding enzyme 467 865 1.4E-73 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_20560 53acfaa41a37c3139268791ce729310f 3338 Pfam PF00501 AMP-binding enzyme 2724 2896 3.3E-23 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_20560 53acfaa41a37c3139268791ce729310f 3338 Pfam PF00501 AMP-binding enzyme 1536 1926 1.8E-75 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_20560 53acfaa41a37c3139268791ce729310f 3338 SUPERFAMILY SSF56801 1528 2042 2.22E-136 T 13-10-2018 RAM_20560 53acfaa41a37c3139268791ce729310f 3338 ProSitePatterns PS00012 Phosphopantetheine attachment site. 3021 3036 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_20560 53acfaa41a37c3139268791ce729310f 3338 Gene3D G3DSA:3.30.300.30 1921 2017 7.7E-33 T 13-10-2018 RAM_20560 53acfaa41a37c3139268791ce729310f 3338 SUPERFAMILY SSF56801 2534 2987 9.42E-60 T 13-10-2018 RAM_20560 53acfaa41a37c3139268791ce729310f 3338 Gene3D G3DSA:3.30.559.10 10 206 7.3E-56 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_20560 53acfaa41a37c3139268791ce729310f 3338 SUPERFAMILY SSF52777 1258 1501 6.11E-54 T 13-10-2018 RAM_20560 53acfaa41a37c3139268791ce729310f 3338 Gene3D G3DSA:3.40.50.980 2585 2639 2.1E-10 T 13-10-2018 RAM_20560 53acfaa41a37c3139268791ce729310f 3338 Gene3D G3DSA:3.40.50.980 2570 2584 2.1E-10 T 13-10-2018 RAM_20560 53acfaa41a37c3139268791ce729310f 3338 ProSitePatterns PS00012 Phosphopantetheine attachment site. 998 1013 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_21670 360b12bb4f0df3d5e2578b37cc5af831 216 SUPERFAMILY SSF53271 10 214 3.15E-42 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like RAM_21670 360b12bb4f0df3d5e2578b37cc5af831 216 Pfam PF00156 Phosphoribosyl transferase domain 15 202 8.3E-23 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 RAM_21670 360b12bb4f0df3d5e2578b37cc5af831 216 Gene3D G3DSA:3.40.50.2020 11 211 4.5E-67 T 13-10-2018 RAM_21670 360b12bb4f0df3d5e2578b37cc5af831 216 Gene3D G3DSA:3.30.1310.20 61 123 4.5E-67 T 13-10-2018 RAM_15900 feae92a41298d4ccb41a1b7c0efb69df 256 Pfam PF00106 short chain dehydrogenase 4 185 2.3E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15900 feae92a41298d4ccb41a1b7c0efb69df 256 SUPERFAMILY SSF51735 4 245 8.2E-56 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_15900 feae92a41298d4ccb41a1b7c0efb69df 256 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 131 159 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_15900 feae92a41298d4ccb41a1b7c0efb69df 256 Gene3D G3DSA:3.40.50.720 3 246 5.4E-57 T 13-10-2018 RAM_15900 feae92a41298d4ccb41a1b7c0efb69df 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 1.6E-19 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15900 feae92a41298d4ccb41a1b7c0efb69df 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 144 163 1.6E-19 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15900 feae92a41298d4ccb41a1b7c0efb69df 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 182 1.6E-19 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15900 feae92a41298d4ccb41a1b7c0efb69df 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 72 83 1.6E-19 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15900 feae92a41298d4ccb41a1b7c0efb69df 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 118 134 1.6E-19 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_07325 7c14b0ccbf7931782dda08db4ea1cbe1 184 Gene3D G3DSA:3.40.630.30 30 164 3.0E-6 T 13-10-2018 RAM_07325 7c14b0ccbf7931782dda08db4ea1cbe1 184 SUPERFAMILY SSF55729 36 142 2.22E-5 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_46920 709c4f545732bc87c0ed2ea6035b020f 183 Pfam PF08281 Sigma-70, region 4 123 175 3.2E-12 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_46920 709c4f545732bc87c0ed2ea6035b020f 183 Gene3D G3DSA:1.10.1740.10 2 118 8.8E-31 T 13-10-2018 RAM_46920 709c4f545732bc87c0ed2ea6035b020f 183 Pfam PF04542 Sigma-70 region 2 27 93 1.1E-14 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_46920 709c4f545732bc87c0ed2ea6035b020f 183 Gene3D G3DSA:1.10.10.10 119 181 1.1E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_46920 709c4f545732bc87c0ed2ea6035b020f 183 SUPERFAMILY SSF88659 121 180 1.29E-13 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_46920 709c4f545732bc87c0ed2ea6035b020f 183 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 23 177 4.0E-28 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_46920 709c4f545732bc87c0ed2ea6035b020f 183 SUPERFAMILY SSF88946 4 107 6.28E-29 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_20235 6a1738058386bbf7866ea09f8b51272d 162 Gene3D G3DSA:1.10.10.10 2 152 1.2E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_20235 6a1738058386bbf7866ea09f8b51272d 162 Pfam PF12802 MarR family 52 101 5.5E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_20235 6a1738058386bbf7866ea09f8b51272d 162 SMART SM00347 38 137 2.0E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_20235 6a1738058386bbf7866ea09f8b51272d 162 SUPERFAMILY SSF46785 33 150 5.82E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_01575 c0d175f20e3c3e37dfc584bfcaf592fb 670 SUPERFAMILY SSF51905 461 648 3.74E-22 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_01575 c0d175f20e3c3e37dfc584bfcaf592fb 670 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 377 650 6.2E-28 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAM_01575 c0d175f20e3c3e37dfc584bfcaf592fb 670 SUPERFAMILY SSF51395 4 362 3.66E-106 T 13-10-2018 RAM_01575 c0d175f20e3c3e37dfc584bfcaf592fb 670 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 378 397 1.5E-11 T 13-10-2018 RAM_01575 c0d175f20e3c3e37dfc584bfcaf592fb 670 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 498 516 1.5E-11 T 13-10-2018 RAM_01575 c0d175f20e3c3e37dfc584bfcaf592fb 670 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 616 632 1.5E-11 T 13-10-2018 RAM_01575 c0d175f20e3c3e37dfc584bfcaf592fb 670 Gene3D G3DSA:3.20.20.70 3 369 7.0E-117 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_01575 c0d175f20e3c3e37dfc584bfcaf592fb 670 Gene3D G3DSA:3.50.50.60 470 623 8.5E-117 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_01575 c0d175f20e3c3e37dfc584bfcaf592fb 670 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 7 332 3.5E-79 T 13-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 RAM_01575 c0d175f20e3c3e37dfc584bfcaf592fb 670 SUPERFAMILY SSF51971 334 518 8.59E-41 T 13-10-2018 RAM_01575 c0d175f20e3c3e37dfc584bfcaf592fb 670 Gene3D G3DSA:3.40.50.720 376 664 8.5E-117 T 13-10-2018 RAM_01575 c0d175f20e3c3e37dfc584bfcaf592fb 670 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 377 399 1.5E-5 T 13-10-2018 RAM_01575 c0d175f20e3c3e37dfc584bfcaf592fb 670 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 617 631 1.5E-5 T 13-10-2018 RAM_40425 61fe15e202614f1c7bc2ece8ee0d7688 354 Gene3D G3DSA:3.20.20.70 8 295 4.7E-43 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_40425 61fe15e202614f1c7bc2ece8ee0d7688 354 Hamap MF_00660 Coenzyme PQQ synthesis protein E [pqqE]. 1 354 162.869 T 13-10-2018 IPR011843 Coenzyme PQQ biosynthesis protein E, bacteria GO:0018189|GO:0051539 RAM_40425 61fe15e202614f1c7bc2ece8ee0d7688 354 Pfam PF13186 Iron-sulfur cluster-binding domain 236 302 2.9E-9 T 13-10-2018 IPR023885 4Fe4S-binding SPASM domain RAM_40425 61fe15e202614f1c7bc2ece8ee0d7688 354 Pfam PF04055 Radical SAM superfamily 13 166 6.2E-20 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RAM_40425 61fe15e202614f1c7bc2ece8ee0d7688 354 TIGRFAM TIGR02109 PQQ_syn_pqqE: coenzyme PQQ biosynthesis enzyme PqqE 3 338 1.5E-160 T 13-10-2018 IPR011843 Coenzyme PQQ biosynthesis protein E, bacteria GO:0018189|GO:0051539 RAM_40425 61fe15e202614f1c7bc2ece8ee0d7688 354 PIRSF PIRSF037420 1 341 3.0E-102 T 13-10-2018 IPR017200 Coenzyme PQQ synthesis protein E RAM_40425 61fe15e202614f1c7bc2ece8ee0d7688 354 SUPERFAMILY SSF102114 5 311 2.09E-69 T 13-10-2018 RAM_40425 61fe15e202614f1c7bc2ece8ee0d7688 354 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 239 329 1.3E-10 T 13-10-2018 IPR023885 4Fe4S-binding SPASM domain RAM_22930 4b1bb051d29c445231fcc9822a2c5dcc 522 SUPERFAMILY SSF52009 120 223 1.31E-26 T 13-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 RAM_22930 4b1bb051d29c445231fcc9822a2c5dcc 522 Gene3D G3DSA:3.50.30.10 5 221 1.2E-47 T 13-10-2018 RAM_22930 4b1bb051d29c445231fcc9822a2c5dcc 522 Pfam PF05524 PEP-utilising enzyme, N-terminal 5 121 7.0E-18 T 13-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 RAM_22930 4b1bb051d29c445231fcc9822a2c5dcc 522 PIRSF PIRSF000732 1 522 7.6E-143 T 13-10-2018 IPR024692 Phosphotransferase system, enzyme I GO:0008965|GO:0009401 RAM_22930 4b1bb051d29c445231fcc9822a2c5dcc 522 Pfam PF00391 PEP-utilising enzyme, mobile domain 148 218 2.1E-19 T 13-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RAM_22930 4b1bb051d29c445231fcc9822a2c5dcc 522 SUPERFAMILY SSF51621 239 520 4.97E-85 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 RAM_22930 4b1bb051d29c445231fcc9822a2c5dcc 522 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 179 190 - T 13-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 RAM_22930 4b1bb051d29c445231fcc9822a2c5dcc 522 Gene3D G3DSA:3.20.20.60 228 522 2.9E-94 T 13-10-2018 RAM_22930 4b1bb051d29c445231fcc9822a2c5dcc 522 Gene3D G3DSA:1.10.274.10 22 141 1.2E-47 T 13-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 RAM_22930 4b1bb051d29c445231fcc9822a2c5dcc 522 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 435 450 3.0E-18 T 13-10-2018 RAM_22930 4b1bb051d29c445231fcc9822a2c5dcc 522 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 471 483 3.0E-18 T 13-10-2018 RAM_22930 4b1bb051d29c445231fcc9822a2c5dcc 522 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 274 293 3.0E-18 T 13-10-2018 RAM_22930 4b1bb051d29c445231fcc9822a2c5dcc 522 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 418 433 3.0E-18 T 13-10-2018 RAM_22930 4b1bb051d29c445231fcc9822a2c5dcc 522 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 244 511 1.5E-79 T 13-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 RAM_22930 4b1bb051d29c445231fcc9822a2c5dcc 522 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 418 436 - T 13-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 RAM_22930 4b1bb051d29c445231fcc9822a2c5dcc 522 SUPERFAMILY SSF47831 31 138 4.84E-18 T 13-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 RAM_22930 4b1bb051d29c445231fcc9822a2c5dcc 522 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 52 521 1.1E-104 T 13-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 RAM_38390 e0e89289b78fafe52c765d8feafd4736 319 Gene3D G3DSA:1.10.10.10 244 314 2.7E-12 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_38390 e0e89289b78fafe52c765d8feafd4736 319 SMART SM00418 244 317 2.5E-4 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_38390 e0e89289b78fafe52c765d8feafd4736 319 Pfam PF01022 Bacterial regulatory protein, arsR family 252 297 1.3E-6 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_38390 e0e89289b78fafe52c765d8feafd4736 319 SUPERFAMILY SSF46785 246 316 4.93E-13 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_24925 a8fda639ba2cb9b7dff600a026f7b5d2 172 PIRSF PIRSF017340 1 171 1.3E-53 T 13-10-2018 IPR024195 NUDIX hydrolase, YfcD, predicted GO:0016817 RAM_24925 a8fda639ba2cb9b7dff600a026f7b5d2 172 ProSitePatterns PS00893 Nudix box signature. 70 91 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RAM_24925 a8fda639ba2cb9b7dff600a026f7b5d2 172 Gene3D G3DSA:3.90.79.10 3 171 2.2E-42 T 13-10-2018 RAM_24925 a8fda639ba2cb9b7dff600a026f7b5d2 172 Pfam PF00293 NUDIX domain 34 148 3.5E-18 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RAM_24925 a8fda639ba2cb9b7dff600a026f7b5d2 172 SUPERFAMILY SSF55811 6 170 4.06E-31 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RAM_02020 94ec561d479858e6dc1005e93790c34d 479 SMART SM01350 180 470 2.0E-196 T 13-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 RAM_02020 94ec561d479858e6dc1005e93790c34d 479 Pfam PF00393 6-phosphogluconate dehydrogenase, C-terminal domain 180 469 1.5E-119 T 13-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 RAM_02020 94ec561d479858e6dc1005e93790c34d 479 TIGRFAM TIGR00873 gnd: 6-phosphogluconate dehydrogenase (decarboxylating) 7 470 3.9E-203 T 13-10-2018 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 RAM_02020 94ec561d479858e6dc1005e93790c34d 479 ProSitePatterns PS00461 6-phosphogluconate dehydrogenase signature. 255 267 - T 13-10-2018 IPR006184 6-phosphogluconate-binding site GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 RAM_02020 94ec561d479858e6dc1005e93790c34d 479 Gene3D G3DSA:1.20.5.320 438 472 6.7E-18 T 13-10-2018 RAM_02020 94ec561d479858e6dc1005e93790c34d 479 Gene3D G3DSA:3.40.50.720 1 181 6.8E-55 T 13-10-2018 RAM_02020 94ec561d479858e6dc1005e93790c34d 479 SUPERFAMILY SSF51735 5 177 4.67E-52 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_02020 94ec561d479858e6dc1005e93790c34d 479 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 68 97 3.4E-79 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 RAM_02020 94ec561d479858e6dc1005e93790c34d 479 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 5 28 3.4E-79 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 RAM_02020 94ec561d479858e6dc1005e93790c34d 479 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 359 381 3.4E-79 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 RAM_02020 94ec561d479858e6dc1005e93790c34d 479 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 251 278 3.4E-79 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 RAM_02020 94ec561d479858e6dc1005e93790c34d 479 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 121 146 3.4E-79 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 RAM_02020 94ec561d479858e6dc1005e93790c34d 479 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 169 197 3.4E-79 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 RAM_02020 94ec561d479858e6dc1005e93790c34d 479 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 6 175 2.7E-49 T 13-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 RAM_02020 94ec561d479858e6dc1005e93790c34d 479 SUPERFAMILY SSF48179 178 472 3.97E-115 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RAM_02020 94ec561d479858e6dc1005e93790c34d 479 Gene3D G3DSA:1.10.1040.10 182 437 7.6E-97 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RAM_02020 94ec561d479858e6dc1005e93790c34d 479 PIRSF PIRSF000109 1 477 3.6E-198 T 13-10-2018 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 RAM_05575 faa9d00c99a9f14ee72969338b51f6a3 167 Gene3D G3DSA:3.10.129.10 1 150 1.0E-45 T 13-10-2018 RAM_05575 faa9d00c99a9f14ee72969338b51f6a3 167 Pfam PF01575 MaoC like domain 12 118 8.4E-16 T 13-10-2018 IPR002539 MaoC-like dehydratase domain RAM_05575 faa9d00c99a9f14ee72969338b51f6a3 167 SUPERFAMILY SSF54637 2 151 1.64E-44 T 13-10-2018 IPR029069 HotDog domain superfamily RAM_46295 703e8433468c4af6b0ea404df19a37de 273 Pfam PF12822 ECF transporter, substrate-specific component 79 247 1.1E-14 T 13-10-2018 IPR024529 ECF transporter, substrate-specific component GO:0005215 RAM_46295 703e8433468c4af6b0ea404df19a37de 273 PIRSF PIRSF037395 9 271 3.3E-92 T 13-10-2018 IPR017196 ECF transporter, predicted substrate-specific component UCP037395 RAM_46295 703e8433468c4af6b0ea404df19a37de 273 Gene3D G3DSA:1.10.1760.20 76 257 2.4E-8 T 13-10-2018 RAM_33530 3736a89d7b83053b12aeab59583c2961 756 SUPERFAMILY SSF81653 246 338 1.12E-21 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 RAM_33530 3736a89d7b83053b12aeab59583c2961 756 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 443 449 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 RAM_33530 3736a89d7b83053b12aeab59583c2961 756 SUPERFAMILY SSF56784 439 738 1.84E-53 T 13-10-2018 IPR036412 HAD-like superfamily RAM_33530 3736a89d7b83053b12aeab59583c2961 756 Gene3D G3DSA:2.70.150.20 234 346 6.6E-31 T 13-10-2018 RAM_33530 3736a89d7b83053b12aeab59583c2961 756 PRINTS PR00940 Cation-transporting P-type ATPase A signature 90 108 3.8E-6 T 13-10-2018 IPR000579 Cation-transporting P-type ATPase A/B GO:0006812|GO:0016021|GO:0019829 RAM_33530 3736a89d7b83053b12aeab59583c2961 756 PRINTS PR00940 Cation-transporting P-type ATPase A signature 244 263 3.8E-6 T 13-10-2018 IPR000579 Cation-transporting P-type ATPase A/B GO:0006812|GO:0016021|GO:0019829 RAM_33530 3736a89d7b83053b12aeab59583c2961 756 PRINTS PR00940 Cation-transporting P-type ATPase A signature 108 125 3.8E-6 T 13-10-2018 IPR000579 Cation-transporting P-type ATPase A/B GO:0006812|GO:0016021|GO:0019829 RAM_33530 3736a89d7b83053b12aeab59583c2961 756 PRINTS PR00940 Cation-transporting P-type ATPase A signature 192 209 3.8E-6 T 13-10-2018 IPR000579 Cation-transporting P-type ATPase A/B GO:0006812|GO:0016021|GO:0019829 RAM_33530 3736a89d7b83053b12aeab59583c2961 756 Pfam PF00403 Heavy-metal-associated domain 15 73 7.2E-11 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 RAM_33530 3736a89d7b83053b12aeab59583c2961 756 Pfam PF00702 haloacid dehalogenase-like hydrolase 437 652 4.2E-48 T 13-10-2018 RAM_33530 3736a89d7b83053b12aeab59583c2961 756 SUPERFAMILY SSF55008 10 77 1.57E-17 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 RAM_33530 3736a89d7b83053b12aeab59583c2961 756 Gene3D G3DSA:3.40.50.1000 422 690 3.7E-86 T 13-10-2018 IPR023214 HAD superfamily RAM_33530 3736a89d7b83053b12aeab59583c2961 756 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 638 657 3.0E-21 T 13-10-2018 RAM_33530 3736a89d7b83053b12aeab59583c2961 756 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 291 305 3.0E-21 T 13-10-2018 RAM_33530 3736a89d7b83053b12aeab59583c2961 756 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 563 574 3.0E-21 T 13-10-2018 RAM_33530 3736a89d7b83053b12aeab59583c2961 756 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 585 595 3.0E-21 T 13-10-2018 RAM_33530 3736a89d7b83053b12aeab59583c2961 756 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 661 673 3.0E-21 T 13-10-2018 RAM_33530 3736a89d7b83053b12aeab59583c2961 756 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 441 455 3.0E-21 T 13-10-2018 RAM_33530 3736a89d7b83053b12aeab59583c2961 756 Pfam PF00122 E1-E2 ATPase 242 419 7.0E-48 T 13-10-2018 RAM_33530 3736a89d7b83053b12aeab59583c2961 756 Gene3D G3DSA:3.30.70.100 1 84 4.7E-18 T 13-10-2018 RAM_33530 3736a89d7b83053b12aeab59583c2961 756 Gene3D G3DSA:3.40.1110.10 452 570 3.7E-86 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 RAM_33530 3736a89d7b83053b12aeab59583c2961 756 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 206 741 6.4E-148 T 13-10-2018 RAM_33530 3736a89d7b83053b12aeab59583c2961 756 SUPERFAMILY SSF81665 231 433 3.79E-7 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 RAM_33530 3736a89d7b83053b12aeab59583c2961 756 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 163 740 7.4E-169 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 RAM_33530 3736a89d7b83053b12aeab59583c2961 756 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 215 718 5.1E-78 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RAM_33530 3736a89d7b83053b12aeab59583c2961 756 ProSitePatterns PS01047 Heavy-metal-associated domain. 17 45 - T 13-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 RAM_02770 2d79a286f5402f20e32cdd1425d4cf45 354 SUPERFAMILY SSF52518 24 250 4.47E-79 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_02770 2d79a286f5402f20e32cdd1425d4cf45 354 Gene3D G3DSA:3.40.50.970 89 243 1.3E-25 T 13-10-2018 RAM_02770 2d79a286f5402f20e32cdd1425d4cf45 354 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 70 217 6.3E-30 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RAM_33000 9905b076ea7dbf01efaf40f25562fb24 126 Gene3D G3DSA:2.30.40.10 4 49 6.0E-29 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_33000 9905b076ea7dbf01efaf40f25562fb24 126 SUPERFAMILY SSF51338 3 60 1.64E-12 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_33000 9905b076ea7dbf01efaf40f25562fb24 126 SUPERFAMILY SSF51556 49 124 6.11E-19 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_33000 9905b076ea7dbf01efaf40f25562fb24 126 Pfam PF01979 Amidohydrolase family 45 111 2.0E-8 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RAM_33000 9905b076ea7dbf01efaf40f25562fb24 126 Gene3D G3DSA:3.20.20.140 50 124 6.0E-29 T 13-10-2018 RAM_12465 7a319c91af1df5c1f77f72ba6986db37 312 Gene3D G3DSA:3.30.420.40 116 288 8.5E-98 T 13-10-2018 RAM_12465 7a319c91af1df5c1f77f72ba6986db37 312 SUPERFAMILY SSF53067 1 309 2.42E-62 T 13-10-2018 RAM_12465 7a319c91af1df5c1f77f72ba6986db37 312 Pfam PF00480 ROK family 1 306 4.7E-74 T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 RAM_12465 7a319c91af1df5c1f77f72ba6986db37 312 Gene3D G3DSA:3.30.420.40 1 301 8.5E-98 T 13-10-2018 RAM_12465 7a319c91af1df5c1f77f72ba6986db37 312 ProSitePatterns PS01125 ROK family signature. 124 151 - T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 RAM_13975 695f759ee498c6404a7be56821137c8d 373 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 5 373 44.303 T 13-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RAM_13975 695f759ee498c6404a7be56821137c8d 373 Gene3D G3DSA:3.50.30.20 4 149 1.4E-55 T 13-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RAM_13975 695f759ee498c6404a7be56821137c8d 373 SUPERFAMILY SSF52317 155 371 9.02E-48 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_13975 695f759ee498c6404a7be56821137c8d 373 PRINTS PR00097 Anthranilate synthase component II signature 253 264 4.4E-6 T 13-10-2018 RAM_13975 695f759ee498c6404a7be56821137c8d 373 PRINTS PR00097 Anthranilate synthase component II signature 225 234 4.4E-6 T 13-10-2018 RAM_13975 695f759ee498c6404a7be56821137c8d 373 PRINTS PR00097 Anthranilate synthase component II signature 344 357 4.4E-6 T 13-10-2018 RAM_13975 695f759ee498c6404a7be56821137c8d 373 PRINTS PR00096 Glutamine amidotransferase superfamily signature 225 234 2.2E-11 T 13-10-2018 RAM_13975 695f759ee498c6404a7be56821137c8d 373 PRINTS PR00096 Glutamine amidotransferase superfamily signature 253 264 2.2E-11 T 13-10-2018 RAM_13975 695f759ee498c6404a7be56821137c8d 373 PRINTS PR00096 Glutamine amidotransferase superfamily signature 344 357 2.2E-11 T 13-10-2018 RAM_13975 695f759ee498c6404a7be56821137c8d 373 Pfam PF00117 Glutamine amidotransferase class-I 186 367 4.3E-37 T 13-10-2018 IPR017926 Glutamine amidotransferase RAM_13975 695f759ee498c6404a7be56821137c8d 373 Gene3D G3DSA:3.40.50.880 155 372 4.5E-52 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_13975 695f759ee498c6404a7be56821137c8d 373 SUPERFAMILY SSF52021 6 138 1.31E-53 T 13-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RAM_13975 695f759ee498c6404a7be56821137c8d 373 SMART SM01097 5 135 1.7E-82 T 13-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RAM_13975 695f759ee498c6404a7be56821137c8d 373 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 7 371 2.0E-133 T 13-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RAM_13975 695f759ee498c6404a7be56821137c8d 373 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 7 133 1.2E-50 T 13-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RAM_13975 695f759ee498c6404a7be56821137c8d 373 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 183 197 7.2E-33 T 13-10-2018 RAM_13975 695f759ee498c6404a7be56821137c8d 373 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 270 287 7.2E-33 T 13-10-2018 RAM_13975 695f759ee498c6404a7be56821137c8d 373 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 253 269 7.2E-33 T 13-10-2018 RAM_13975 695f759ee498c6404a7be56821137c8d 373 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 295 306 7.2E-33 T 13-10-2018 RAM_13975 695f759ee498c6404a7be56821137c8d 373 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 222 236 7.2E-33 T 13-10-2018 RAM_09590 9960999f338b9083732ef751afe3cf94 328 SUPERFAMILY SSF51735 2 142 2.72E-33 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_09590 9960999f338b9083732ef751afe3cf94 328 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 2 112 1.6E-13 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 RAM_09590 9960999f338b9083732ef751afe3cf94 328 Gene3D G3DSA:3.40.50.720 2 312 8.9E-84 T 13-10-2018 RAM_09590 9960999f338b9083732ef751afe3cf94 328 SUPERFAMILY SSF55347 121 248 2.13E-24 T 13-10-2018 RAM_09590 9960999f338b9083732ef751afe3cf94 328 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 135 227 1.8E-6 T 13-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 RAM_09590 9960999f338b9083732ef751afe3cf94 328 Gene3D G3DSA:3.30.360.10 132 263 8.9E-84 T 13-10-2018 RAM_34330 d8b77c9f425bf5c14f9544f9de078ace 242 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 7 222 2.5E-8 T 13-10-2018 IPR013830 SGNH hydrolase-type esterase domain RAM_34330 d8b77c9f425bf5c14f9544f9de078ace 242 SUPERFAMILY SSF52266 3 229 1.83E-12 T 13-10-2018 RAM_42160 9a9e548beee5ae9b89b5ec619bb783fe 136 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 2 92 1.2E-14 T 13-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RAM_42160 9a9e548beee5ae9b89b5ec619bb783fe 136 SUPERFAMILY SSF50475 3 118 1.16E-18 T 13-10-2018 RAM_42160 9a9e548beee5ae9b89b5ec619bb783fe 136 Gene3D G3DSA:2.30.110.10 1 119 3.4E-22 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_42160 9a9e548beee5ae9b89b5ec619bb783fe 136 TIGRFAM TIGR04023 PPOX_MSMEG_5819: PPOX class F420-dependent enzyme, MSMEG_5819/OxyR family 2 119 8.8E-47 T 13-10-2018 IPR024031 PPOX class F420-dependent enzyme, MSMEG_5819/OxyR family KEGG: 00253+1.3.98.4|MetaCyc: PWY-7812 RAM_43370 5e7d607359bd1d77e7193ea33d8d73b9 571 ProSitePatterns PS00145 Urease active site. 324 340 - T 13-10-2018 IPR017950 Urease active site GO:0009039 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RAM_43370 5e7d607359bd1d77e7193ea33d8d73b9 571 Hamap MF_01953 Urease subunit alpha [ureC]. 2 571 54.727 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RAM_43370 5e7d607359bd1d77e7193ea33d8d73b9 571 Gene3D G3DSA:2.30.40.10 4 486 9.5E-286 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_43370 5e7d607359bd1d77e7193ea33d8d73b9 571 Pfam PF00449 Urease alpha-subunit, N-terminal domain 3 125 2.0E-52 T 13-10-2018 IPR011612 Urease alpha-subunit, N-terminal domain KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RAM_43370 5e7d607359bd1d77e7193ea33d8d73b9 571 Pfam PF01979 Amidohydrolase family 132 455 4.7E-68 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RAM_43370 5e7d607359bd1d77e7193ea33d8d73b9 571 Gene3D G3DSA:3.20.20.140 136 571 9.5E-286 T 13-10-2018 RAM_43370 5e7d607359bd1d77e7193ea33d8d73b9 571 TIGRFAM TIGR01792 urease_alph: urease, alpha subunit 3 571 4.7E-267 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RAM_43370 5e7d607359bd1d77e7193ea33d8d73b9 571 SUPERFAMILY SSF51338 2 183 2.26E-58 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_43370 5e7d607359bd1d77e7193ea33d8d73b9 571 SUPERFAMILY SSF51556 136 571 1.79E-181 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_43370 5e7d607359bd1d77e7193ea33d8d73b9 571 ProSitePatterns PS01120 Urease nickel ligands signature. 134 147 - T 13-10-2018 IPR029754 Urease nickel binding site GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RAM_43370 5e7d607359bd1d77e7193ea33d8d73b9 571 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 341 357 4.8E-33 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RAM_43370 5e7d607359bd1d77e7193ea33d8d73b9 571 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 407 422 4.8E-33 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RAM_43370 5e7d607359bd1d77e7193ea33d8d73b9 571 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 302 319 4.8E-33 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RAM_43370 5e7d607359bd1d77e7193ea33d8d73b9 571 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 433 446 4.8E-33 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RAM_05265 f73a296dee95cb3643be5fe98424b16b 335 Pfam PF00704 Glycosyl hydrolases family 18 32 282 2.6E-19 T 13-10-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 RAM_05265 f73a296dee95cb3643be5fe98424b16b 335 SUPERFAMILY SSF51445 29 325 8.21E-40 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_05265 f73a296dee95cb3643be5fe98424b16b 335 Gene3D G3DSA:3.20.20.80 27 334 4.4E-56 T 13-10-2018 RAM_05265 f73a296dee95cb3643be5fe98424b16b 335 ProSitePatterns PS01095 Chitinases family 18 active site. 144 152 - T 13-10-2018 IPR001579 Glycoside hydrolase, chitinase active site GO:0004553|GO:0005975 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 RAM_05265 f73a296dee95cb3643be5fe98424b16b 335 SMART SM00636 30 318 0.0064 T 13-10-2018 IPR011583 Chitinase II GO:0008061 RAM_02410 3174305da8d453f647b482d7b2ab8c7b 347 SUPERFAMILY SSF69593 84 335 1.18E-29 T 13-10-2018 RAM_02410 3174305da8d453f647b482d7b2ab8c7b 347 SMART SM00563 134 252 1.0E-15 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 RAM_02410 3174305da8d453f647b482d7b2ab8c7b 347 Pfam PF01553 Acyltransferase 120 249 2.7E-15 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 RAM_02410 3174305da8d453f647b482d7b2ab8c7b 347 PIRSF PIRSF016753 27 64 74.0 T 13-10-2018 IPR016676 Phospholipid/glycerol acyltransferase, predicted RAM_02410 3174305da8d453f647b482d7b2ab8c7b 347 PIRSF PIRSF016753 62 347 6.3E-92 T 13-10-2018 IPR016676 Phospholipid/glycerol acyltransferase, predicted RAM_31870 83531bfe400206823341bce78a22bb1d 373 Gene3D G3DSA:3.40.50.1820 3 373 2.3E-129 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_31870 83531bfe400206823341bce78a22bb1d 373 Pfam PF06441 Epoxide hydrolase N terminus 4 107 7.4E-29 T 13-10-2018 IPR010497 Epoxide hydrolase, N-terminal Reactome: R-HSA-211945 RAM_31870 83531bfe400206823341bce78a22bb1d 373 SUPERFAMILY SSF53474 2 370 4.63E-92 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_31870 83531bfe400206823341bce78a22bb1d 373 PIRSF PIRSF001112 2 373 9.2E-118 T 13-10-2018 IPR016292 Epoxide hydrolase GO:0033961 Reactome: R-HSA-211945 RAM_31870 83531bfe400206823341bce78a22bb1d 373 PRINTS PR00412 Epoxide hydrolase signature 127 142 1.1E-16 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_31870 83531bfe400206823341bce78a22bb1d 373 PRINTS PR00412 Epoxide hydrolase signature 172 185 1.1E-16 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_31870 83531bfe400206823341bce78a22bb1d 373 PRINTS PR00412 Epoxide hydrolase signature 346 368 1.1E-16 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_31870 83531bfe400206823341bce78a22bb1d 373 PRINTS PR00412 Epoxide hydrolase signature 98 116 1.1E-16 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_31870 83531bfe400206823341bce78a22bb1d 373 PRINTS PR00412 Epoxide hydrolase signature 186 199 1.1E-16 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_14140 ffcd6d74201acd4ab507275bbe6789ec 334 SUPERFAMILY SSF53448 40 288 6.68E-63 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_14140 ffcd6d74201acd4ab507275bbe6789ec 334 Pfam PF00535 Glycosyl transferase family 2 41 166 2.3E-14 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RAM_14140 ffcd6d74201acd4ab507275bbe6789ec 334 Gene3D G3DSA:3.90.550.10 2 323 1.2E-109 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_30645 cb1c12c67c2b8c3a79ae4c8c0c5cce6f 502 Gene3D G3DSA:1.20.1730.10 22 491 7.3E-81 T 13-10-2018 IPR038377 Sodium/glucose symporter superfamily RAM_30645 cb1c12c67c2b8c3a79ae4c8c0c5cce6f 502 Pfam PF00474 Sodium:solute symporter family 33 427 1.4E-35 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 RAM_31925 a5f51de44397f60caeed369e730c1982 273 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 49 269 8.4E-34 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_31925 a5f51de44397f60caeed369e730c1982 273 Pfam PF04545 Sigma-70, region 4 219 268 2.0E-16 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 RAM_31925 a5f51de44397f60caeed369e730c1982 273 Pfam PF04539 Sigma-70 region 3 135 193 4.8E-13 T 13-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 RAM_31925 a5f51de44397f60caeed369e730c1982 273 SUPERFAMILY SSF88946 21 122 5.63E-27 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_31925 a5f51de44397f60caeed369e730c1982 273 TIGRFAM TIGR02980 SigBFG: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily 47 270 7.8E-83 T 13-10-2018 IPR014322 RNA polymerase sigma-B/F/G type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_31925 a5f51de44397f60caeed369e730c1982 273 PRINTS PR00046 Major sigma-70 factor signature 255 266 1.2E-9 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RAM_31925 a5f51de44397f60caeed369e730c1982 273 PRINTS PR00046 Major sigma-70 factor signature 223 235 1.2E-9 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RAM_31925 a5f51de44397f60caeed369e730c1982 273 PRINTS PR00046 Major sigma-70 factor signature 240 255 1.2E-9 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RAM_31925 a5f51de44397f60caeed369e730c1982 273 PRINTS PR00046 Major sigma-70 factor signature 77 90 1.2E-9 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RAM_31925 a5f51de44397f60caeed369e730c1982 273 Gene3D G3DSA:1.20.120.1810 15 121 2.0E-16 T 13-10-2018 RAM_31925 a5f51de44397f60caeed369e730c1982 273 SUPERFAMILY SSF88659 126 194 6.1E-15 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_31925 a5f51de44397f60caeed369e730c1982 273 SUPERFAMILY SSF88659 192 270 2.99E-16 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_31925 a5f51de44397f60caeed369e730c1982 273 Pfam PF04542 Sigma-70 region 2 53 122 6.8E-15 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_31925 a5f51de44397f60caeed369e730c1982 273 Gene3D G3DSA:1.20.140.160 125 272 4.1E-32 T 13-10-2018 RAM_24195 8142781bbbd1958ebb10379b6ef74e25 545 ProSitePatterns PS00455 Putative AMP-binding domain signature. 187 198 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_24195 8142781bbbd1958ebb10379b6ef74e25 545 Pfam PF00501 AMP-binding enzyme 47 442 1.0E-88 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_24195 8142781bbbd1958ebb10379b6ef74e25 545 Gene3D G3DSA:3.30.300.30 435 541 1.8E-37 T 13-10-2018 RAM_24195 8142781bbbd1958ebb10379b6ef74e25 545 Pfam PF13193 AMP-binding enzyme C-terminal domain 450 525 3.6E-15 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_24195 8142781bbbd1958ebb10379b6ef74e25 545 Gene3D G3DSA:3.40.50.12780 36 434 1.9E-139 T 13-10-2018 RAM_24195 8142781bbbd1958ebb10379b6ef74e25 545 SUPERFAMILY SSF56801 29 536 2.22E-144 T 13-10-2018 RAM_24195 8142781bbbd1958ebb10379b6ef74e25 545 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 66 466 5.8E-123 T 13-10-2018 IPR010071 Amino acid adenylation domain RAM_02475 763d50175608505e525a19d1cae597b5 510 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 14 28 - T 13-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RAM_02475 763d50175608505e525a19d1cae597b5 510 SUPERFAMILY SSF69618 238 489 3.01E-70 T 13-10-2018 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RAM_02475 763d50175608505e525a19d1cae597b5 510 Gene3D G3DSA:3.40.50.10090 270 410 1.8E-30 T 13-10-2018 RAM_02475 763d50175608505e525a19d1cae597b5 510 Gene3D G3DSA:3.40.1010.10 1 117 4.7E-22 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 RAM_02475 763d50175608505e525a19d1cae597b5 510 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 10 203 1.6E-34 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 RAM_02475 763d50175608505e525a19d1cae597b5 510 Gene3D G3DSA:3.30.950.10 118 265 4.1E-21 T 13-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 RAM_02475 763d50175608505e525a19d1cae597b5 510 Pfam PF02602 Uroporphyrinogen-III synthase HemD 252 482 1.9E-65 T 13-10-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RAM_02475 763d50175608505e525a19d1cae597b5 510 Gene3D G3DSA:3.40.50.10090 418 505 1.3E-10 T 13-10-2018 RAM_02475 763d50175608505e525a19d1cae597b5 510 SUPERFAMILY SSF53790 5 241 1.09E-41 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 RAM_33495 0f71e965abb309b7b4fc0171b7162bef 190 SUPERFAMILY SSF88946 7 106 1.41E-20 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_33495 0f71e965abb309b7b4fc0171b7162bef 190 Pfam PF04542 Sigma-70 region 2 31 95 2.8E-11 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_33495 0f71e965abb309b7b4fc0171b7162bef 190 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 26 180 7.2E-24 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_33495 0f71e965abb309b7b4fc0171b7162bef 190 Gene3D G3DSA:1.10.10.10 121 186 9.6E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_33495 0f71e965abb309b7b4fc0171b7162bef 190 Gene3D G3DSA:1.10.1740.10 3 92 4.2E-30 T 13-10-2018 RAM_33495 0f71e965abb309b7b4fc0171b7162bef 190 SUPERFAMILY SSF88659 124 181 2.8E-13 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_33495 0f71e965abb309b7b4fc0171b7162bef 190 Pfam PF08281 Sigma-70, region 4 132 179 9.5E-15 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_43260 7b1d5c9877e393d17032c4d10a58841b 438 SUPERFAMILY SSF48256 13 438 6.54E-156 T 13-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 RAM_43260 7b1d5c9877e393d17032c4d10a58841b 438 PIRSF PIRSF001369 46 438 1.0E-155 T 13-10-2018 IPR024176 Citrate synthase, bacterial-type RAM_43260 7b1d5c9877e393d17032c4d10a58841b 438 ProSitePatterns PS00480 Citrate synthase signature. 313 325 - T 13-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 RAM_43260 7b1d5c9877e393d17032c4d10a58841b 438 Gene3D G3DSA:2.20.28.60 10 59 7.5E-16 T 13-10-2018 RAM_43260 7b1d5c9877e393d17032c4d10a58841b 438 Gene3D G3DSA:1.10.230.10 277 386 4.4E-140 T 13-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain RAM_43260 7b1d5c9877e393d17032c4d10a58841b 438 PRINTS PR00143 Citrate synthase signature 250 278 6.6E-54 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 RAM_43260 7b1d5c9877e393d17032c4d10a58841b 438 PRINTS PR00143 Citrate synthase signature 174 187 6.6E-54 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 RAM_43260 7b1d5c9877e393d17032c4d10a58841b 438 PRINTS PR00143 Citrate synthase signature 389 403 6.6E-54 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 RAM_43260 7b1d5c9877e393d17032c4d10a58841b 438 PRINTS PR00143 Citrate synthase signature 228 243 6.6E-54 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 RAM_43260 7b1d5c9877e393d17032c4d10a58841b 438 PRINTS PR00143 Citrate synthase signature 369 385 6.6E-54 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 RAM_43260 7b1d5c9877e393d17032c4d10a58841b 438 PRINTS PR00143 Citrate synthase signature 306 326 6.6E-54 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 RAM_43260 7b1d5c9877e393d17032c4d10a58841b 438 Pfam PF00285 Citrate synthase, C-terminal domain 55 421 6.4E-134 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 RAM_43260 7b1d5c9877e393d17032c4d10a58841b 438 Gene3D G3DSA:1.10.580.10 66 421 4.4E-140 T 13-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 RAM_43260 7b1d5c9877e393d17032c4d10a58841b 438 TIGRFAM TIGR01798 cit_synth_I: citrate (Si)-synthase 23 432 2.7E-175 T 13-10-2018 IPR010953 Citrate synthase, type I GO:0004108|GO:0005737 RAM_41165 dd57015387b60811c0396d946d6dc29b 409 Gene3D G3DSA:2.60.120.10 310 391 2.0E-125 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_41165 dd57015387b60811c0396d946d6dc29b 409 PIRSF PIRSF001480 1 408 2.9E-92 T 13-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 RAM_41165 dd57015387b60811c0396d946d6dc29b 409 Gene3D G3DSA:1.10.441.10 151 309 2.0E-125 T 13-10-2018 RAM_41165 dd57015387b60811c0396d946d6dc29b 409 SUPERFAMILY SSF51182 3 385 5.0E-90 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RAM_41165 dd57015387b60811c0396d946d6dc29b 409 TIGRFAM TIGR00218 manA: mannose-6-phosphate isomerase, class I 4 391 8.3E-64 T 13-10-2018 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 RAM_41165 dd57015387b60811c0396d946d6dc29b 409 Gene3D G3DSA:2.60.120.10 6 284 2.0E-125 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_41165 dd57015387b60811c0396d946d6dc29b 409 Pfam PF01238 Phosphomannose isomerase type I 4 365 9.8E-61 T 13-10-2018 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 RAM_41165 dd57015387b60811c0396d946d6dc29b 409 PRINTS PR00714 Phosphomannose isomerase type I signature 82 103 5.8E-58 T 13-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 RAM_41165 dd57015387b60811c0396d946d6dc29b 409 PRINTS PR00714 Phosphomannose isomerase type I signature 229 244 5.8E-58 T 13-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 RAM_41165 dd57015387b60811c0396d946d6dc29b 409 PRINTS PR00714 Phosphomannose isomerase type I signature 264 283 5.8E-58 T 13-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 RAM_41165 dd57015387b60811c0396d946d6dc29b 409 PRINTS PR00714 Phosphomannose isomerase type I signature 4 22 5.8E-58 T 13-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 RAM_41165 dd57015387b60811c0396d946d6dc29b 409 PRINTS PR00714 Phosphomannose isomerase type I signature 283 302 5.8E-58 T 13-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 RAM_41165 dd57015387b60811c0396d946d6dc29b 409 PRINTS PR00714 Phosphomannose isomerase type I signature 127 150 5.8E-58 T 13-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 RAM_41165 dd57015387b60811c0396d946d6dc29b 409 PRINTS PR00714 Phosphomannose isomerase type I signature 245 264 5.8E-58 T 13-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 RAM_41165 dd57015387b60811c0396d946d6dc29b 409 PRINTS PR00714 Phosphomannose isomerase type I signature 32 47 5.8E-58 T 13-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 RAM_02470 a5b36b1d41e56b1441f1d63ea541418a 309 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 2 297 9.8E-87 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RAM_02470 a5b36b1d41e56b1441f1d63ea541418a 309 Gene3D G3DSA:3.30.160.40 211 305 4.9E-15 T 13-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RAM_02470 a5b36b1d41e56b1441f1d63ea541418a 309 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 217 297 2.2E-14 T 13-10-2018 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RAM_02470 a5b36b1d41e56b1441f1d63ea541418a 309 Gene3D G3DSA:3.40.190.10 89 188 7.8E-74 T 13-10-2018 RAM_02470 a5b36b1d41e56b1441f1d63ea541418a 309 Gene3D G3DSA:3.40.190.10 1 204 7.8E-74 T 13-10-2018 RAM_02470 a5b36b1d41e56b1441f1d63ea541418a 309 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 1 299 32.37 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RAM_02470 a5b36b1d41e56b1441f1d63ea541418a 309 PIRSF PIRSF001438 1 309 1.8E-103 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RAM_02470 a5b36b1d41e56b1441f1d63ea541418a 309 SUPERFAMILY SSF54782 210 303 1.01E-13 T 13-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RAM_02470 a5b36b1d41e56b1441f1d63ea541418a 309 PRINTS PR00151 Porphobilinogen deaminase signature 65 84 4.1E-23 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RAM_02470 a5b36b1d41e56b1441f1d63ea541418a 309 PRINTS PR00151 Porphobilinogen deaminase signature 113 130 4.1E-23 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RAM_02470 a5b36b1d41e56b1441f1d63ea541418a 309 PRINTS PR00151 Porphobilinogen deaminase signature 220 237 4.1E-23 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RAM_02470 a5b36b1d41e56b1441f1d63ea541418a 309 PRINTS PR00151 Porphobilinogen deaminase signature 132 149 4.1E-23 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RAM_02470 a5b36b1d41e56b1441f1d63ea541418a 309 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 2 201 4.4E-67 T 13-10-2018 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RAM_02470 a5b36b1d41e56b1441f1d63ea541418a 309 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 221 237 - T 13-10-2018 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RAM_02470 a5b36b1d41e56b1441f1d63ea541418a 309 SUPERFAMILY SSF53850 1 205 5.55E-65 T 13-10-2018 RAM_20370 662a8ef305a7db61886fc74321887938 348 Gene3D G3DSA:3.40.50.720 157 310 3.5E-110 T 13-10-2018 RAM_20370 662a8ef305a7db61886fc74321887938 348 SMART SM00829 10 338 2.0E-4 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_20370 662a8ef305a7db61886fc74321887938 348 SUPERFAMILY SSF51735 146 308 3.32E-33 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_20370 662a8ef305a7db61886fc74321887938 348 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 141 1.0E-25 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_20370 662a8ef305a7db61886fc74321887938 348 Gene3D G3DSA:3.90.180.10 16 338 3.5E-110 T 13-10-2018 RAM_20370 662a8ef305a7db61886fc74321887938 348 Pfam PF00107 Zinc-binding dehydrogenase 183 301 3.6E-13 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RAM_20370 662a8ef305a7db61886fc74321887938 348 SUPERFAMILY SSF50129 7 188 6.76E-44 T 13-10-2018 IPR011032 GroES-like superfamily RAM_20370 662a8ef305a7db61886fc74321887938 348 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 59 73 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 RAM_45825 3c426810eb239eea5b7dd60c64fcc13a 221 SUPERFAMILY SSF46894 140 215 3.4E-22 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_45825 3c426810eb239eea5b7dd60c64fcc13a 221 SMART SM00421 152 209 9.1E-22 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_45825 3c426810eb239eea5b7dd60c64fcc13a 221 Pfam PF00072 Response regulator receiver domain 4 116 8.7E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_45825 3c426810eb239eea5b7dd60c64fcc13a 221 SMART SM00448 2 116 9.0E-30 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_45825 3c426810eb239eea5b7dd60c64fcc13a 221 Pfam PF00196 Bacterial regulatory proteins, luxR family 154 209 2.3E-16 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_45825 3c426810eb239eea5b7dd60c64fcc13a 221 Gene3D G3DSA:3.40.50.12740 2 215 7.3E-69 T 13-10-2018 RAM_45825 3c426810eb239eea5b7dd60c64fcc13a 221 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 155 169 7.8E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_45825 3c426810eb239eea5b7dd60c64fcc13a 221 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 169 185 7.8E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_45825 3c426810eb239eea5b7dd60c64fcc13a 221 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 185 197 7.8E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_45825 3c426810eb239eea5b7dd60c64fcc13a 221 SUPERFAMILY SSF52172 1 134 1.42E-33 T 13-10-2018 IPR011006 CheY-like superfamily RAM_42805 f0d01486a50dd207c51ebe99adf4e520 217 SUPERFAMILY SSF46894 140 216 4.08E-20 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_42805 f0d01486a50dd207c51ebe99adf4e520 217 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 185 197 1.3E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_42805 f0d01486a50dd207c51ebe99adf4e520 217 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 169 185 1.3E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_42805 f0d01486a50dd207c51ebe99adf4e520 217 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 155 169 1.3E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_42805 f0d01486a50dd207c51ebe99adf4e520 217 Pfam PF00196 Bacterial regulatory proteins, luxR family 154 209 8.3E-17 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_42805 f0d01486a50dd207c51ebe99adf4e520 217 ProSitePatterns PS00622 LuxR-type HTH domain signature. 169 196 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_42805 f0d01486a50dd207c51ebe99adf4e520 217 SUPERFAMILY SSF52172 3 132 9.82E-27 T 13-10-2018 IPR011006 CheY-like superfamily RAM_42805 f0d01486a50dd207c51ebe99adf4e520 217 Pfam PF00072 Response regulator receiver domain 6 116 5.9E-21 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_42805 f0d01486a50dd207c51ebe99adf4e520 217 SMART SM00448 2 116 2.3E-20 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_42805 f0d01486a50dd207c51ebe99adf4e520 217 Gene3D G3DSA:3.40.50.12740 2 215 8.6E-60 T 13-10-2018 RAM_42805 f0d01486a50dd207c51ebe99adf4e520 217 SMART SM00421 152 209 3.7E-21 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_46205 73ac8ac0ceded310c5ef5c59c43de279 262 SMART SM00862 150 224 3.3E-28 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_46205 73ac8ac0ceded310c5ef5c59c43de279 262 SUPERFAMILY SSF46894 130 225 1.08E-29 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_46205 73ac8ac0ceded310c5ef5c59c43de279 262 Gene3D G3DSA:3.40.50.2300 5 124 4.3E-41 T 13-10-2018 RAM_46205 73ac8ac0ceded310c5ef5c59c43de279 262 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 224 1.0E-28 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_46205 73ac8ac0ceded310c5ef5c59c43de279 262 Gene3D G3DSA:1.10.10.10 126 230 2.3E-36 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_41320 f2d0ce9b1d1d0e60b2f277fc6bb51ddd 94 SUPERFAMILY SSF55248 1 91 8.76E-26 T 13-10-2018 IPR036428 Pterin 4 alpha carbinolamine dehydratase superfamily GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 RAM_41320 f2d0ce9b1d1d0e60b2f277fc6bb51ddd 94 Gene3D G3DSA:3.30.1360.20 4 94 4.7E-27 T 13-10-2018 IPR036428 Pterin 4 alpha carbinolamine dehydratase superfamily GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 RAM_41320 f2d0ce9b1d1d0e60b2f277fc6bb51ddd 94 Pfam PF01329 Pterin 4 alpha carbinolamine dehydratase 5 89 4.4E-27 T 13-10-2018 IPR001533 Pterin 4 alpha carbinolamine dehydratase GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 RAM_06610 b50a8cdb67c979201edac078beb2ad0e 475 Pfam PF00144 Beta-lactamase 21 318 9.5E-60 T 13-10-2018 IPR001466 Beta-lactamase-related RAM_06610 b50a8cdb67c979201edac078beb2ad0e 475 SUPERFAMILY SSF56601 19 323 7.57E-76 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_06610 b50a8cdb67c979201edac078beb2ad0e 475 Gene3D G3DSA:3.40.710.10 15 336 4.0E-74 T 13-10-2018 RAM_34360 d99041ca082815a2f64213a1adc8a761 574 SUPERFAMILY SSF47323 454 574 1.05E-31 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 RAM_34360 d99041ca082815a2f64213a1adc8a761 574 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 128 139 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 RAM_34360 d99041ca082815a2f64213a1adc8a761 574 SMART SM00836 460 574 3.2E-36 T 13-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 RAM_34360 d99041ca082815a2f64213a1adc8a761 574 SUPERFAMILY SSF52374 116 452 3.44E-86 T 13-10-2018 RAM_34360 d99041ca082815a2f64213a1adc8a761 574 Hamap MF_00123 Arginine--tRNA ligase [argS]. 10 574 24.76 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 RAM_34360 d99041ca082815a2f64213a1adc8a761 574 SMART SM01016 9 92 4.1E-18 T 13-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 RAM_34360 d99041ca082815a2f64213a1adc8a761 574 SUPERFAMILY SSF55190 14 100 4.45E-14 T 13-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 RAM_34360 d99041ca082815a2f64213a1adc8a761 574 Pfam PF05746 DALR anticodon binding domain 460 574 1.5E-29 T 13-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 RAM_34360 d99041ca082815a2f64213a1adc8a761 574 Gene3D G3DSA:1.10.730.10 454 574 1.2E-31 T 13-10-2018 RAM_34360 d99041ca082815a2f64213a1adc8a761 574 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 29 574 3.2E-141 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 RAM_34360 d99041ca082815a2f64213a1adc8a761 574 Gene3D G3DSA:3.40.50.620 114 453 4.7E-98 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAM_34360 d99041ca082815a2f64213a1adc8a761 574 PRINTS PR01038 Arginyl-tRNA synthetase signature 120 135 4.0E-22 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 RAM_34360 d99041ca082815a2f64213a1adc8a761 574 PRINTS PR01038 Arginyl-tRNA synthetase signature 159 172 4.0E-22 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 RAM_34360 d99041ca082815a2f64213a1adc8a761 574 PRINTS PR01038 Arginyl-tRNA synthetase signature 135 151 4.0E-22 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 RAM_34360 d99041ca082815a2f64213a1adc8a761 574 PRINTS PR01038 Arginyl-tRNA synthetase signature 306 327 4.0E-22 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 RAM_34360 d99041ca082815a2f64213a1adc8a761 574 Gene3D G3DSA:3.30.1360.70 3 111 2.4E-19 T 13-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 RAM_34360 d99041ca082815a2f64213a1adc8a761 574 Pfam PF00750 tRNA synthetases class I (R) 110 446 1.2E-101 T 13-10-2018 IPR035684 Arginyl-tRNA synthetase, catalytic core domain KEGG: 00970+6.1.1.19 RAM_34360 d99041ca082815a2f64213a1adc8a761 574 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 23 92 2.7E-14 T 13-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 RAM_17670 659693b14e825ed1329209eee11a8e6a 217 Pfam PF00717 Peptidase S24-like 136 200 4.0E-14 T 13-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C RAM_17670 659693b14e825ed1329209eee11a8e6a 217 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 133 143 2.3E-9 T 13-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 RAM_17670 659693b14e825ed1329209eee11a8e6a 217 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 172 184 2.3E-9 T 13-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 RAM_17670 659693b14e825ed1329209eee11a8e6a 217 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 144 155 2.3E-9 T 13-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 RAM_17670 659693b14e825ed1329209eee11a8e6a 217 Hamap MF_00015 LexA repressor [lexA]. 15 217 29.602 T 13-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 RAM_17670 659693b14e825ed1329209eee11a8e6a 217 Pfam PF01726 LexA DNA binding domain 15 76 8.2E-18 T 13-10-2018 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 RAM_17670 659693b14e825ed1329209eee11a8e6a 217 Gene3D G3DSA:2.10.109.10 102 217 3.9E-37 T 13-10-2018 RAM_17670 659693b14e825ed1329209eee11a8e6a 217 SUPERFAMILY SSF51306 96 215 4.36E-32 T 13-10-2018 IPR036286 LexA/Signal peptidase-like superfamily RAM_17670 659693b14e825ed1329209eee11a8e6a 217 TIGRFAM TIGR00498 lexA: repressor LexA 15 216 8.7E-60 T 13-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 RAM_17670 659693b14e825ed1329209eee11a8e6a 217 SUPERFAMILY SSF46785 16 80 4.83E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_17670 659693b14e825ed1329209eee11a8e6a 217 Gene3D G3DSA:1.10.10.10 14 81 1.2E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_37340 f3dbcb1b96861a9618f0dc1257d26c84 327 Gene3D G3DSA:1.10.1040.10 197 326 2.3E-37 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RAM_37340 f3dbcb1b96861a9618f0dc1257d26c84 327 Gene3D G3DSA:3.40.50.720 1 196 1.0E-53 T 13-10-2018 RAM_37340 f3dbcb1b96861a9618f0dc1257d26c84 327 SUPERFAMILY SSF48179 198 317 1.8E-25 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RAM_37340 f3dbcb1b96861a9618f0dc1257d26c84 327 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 2 317 3.1E-54 T 13-10-2018 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0008677|GO:0015940 KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 RAM_37340 f3dbcb1b96861a9618f0dc1257d26c84 327 SUPERFAMILY SSF51735 2 192 7.09E-13 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_37340 f3dbcb1b96861a9618f0dc1257d26c84 327 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 198 317 2.7E-25 T 13-10-2018 IPR013752 Ketopantoate reductase, C-terminal domain RAM_37340 f3dbcb1b96861a9618f0dc1257d26c84 327 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 171 1.2E-19 T 13-10-2018 IPR013332 Ketopantoate reductase, N-terminal domain RAM_21965 2df5c04df9c2c585d309d01848e6b003 1001 Pfam PF03704 Bacterial transcriptional activator domain 100 238 3.6E-34 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_21965 2df5c04df9c2c585d309d01848e6b003 1001 SUPERFAMILY SSF48452 727 866 2.66E-12 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_21965 2df5c04df9c2c585d309d01848e6b003 1001 PRINTS PR00364 Disease resistance protein signature 274 289 6.9E-6 T 13-10-2018 RAM_21965 2df5c04df9c2c585d309d01848e6b003 1001 PRINTS PR00364 Disease resistance protein signature 342 356 6.9E-6 T 13-10-2018 RAM_21965 2df5c04df9c2c585d309d01848e6b003 1001 PRINTS PR00364 Disease resistance protein signature 433 447 6.9E-6 T 13-10-2018 RAM_21965 2df5c04df9c2c585d309d01848e6b003 1001 SMART SM00028 877 910 150.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_21965 2df5c04df9c2c585d309d01848e6b003 1001 SMART SM00028 716 749 71.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_21965 2df5c04df9c2c585d309d01848e6b003 1001 SMART SM00028 796 829 36.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_21965 2df5c04df9c2c585d309d01848e6b003 1001 SMART SM00028 836 869 1.1 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_21965 2df5c04df9c2c585d309d01848e6b003 1001 SUPERFAMILY SSF48452 832 946 2.19E-8 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_21965 2df5c04df9c2c585d309d01848e6b003 1001 Pfam PF00486 Transcriptional regulatory protein, C terminal 24 93 1.3E-10 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_21965 2df5c04df9c2c585d309d01848e6b003 1001 SUPERFAMILY SSF52540 249 496 3.52E-18 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_21965 2df5c04df9c2c585d309d01848e6b003 1001 SMART SM01043 100 238 8.6E-43 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_21965 2df5c04df9c2c585d309d01848e6b003 1001 Gene3D G3DSA:1.25.40.10 98 257 2.0E-43 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_21965 2df5c04df9c2c585d309d01848e6b003 1001 Gene3D G3DSA:1.10.10.10 1 96 1.8E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_21965 2df5c04df9c2c585d309d01848e6b003 1001 Gene3D G3DSA:1.25.40.10 702 999 1.5E-22 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_21965 2df5c04df9c2c585d309d01848e6b003 1001 SUPERFAMILY SSF46894 3 93 6.24E-13 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_21965 2df5c04df9c2c585d309d01848e6b003 1001 SUPERFAMILY SSF48452 95 255 1.02E-24 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_21965 2df5c04df9c2c585d309d01848e6b003 1001 SMART SM00862 16 93 2.7E-14 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_14535 5269591cd95bb079e80a12fa1a495f3c 962 SUPERFAMILY SSF52743 212 656 3.27E-29 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RAM_14535 5269591cd95bb079e80a12fa1a495f3c 962 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 594 604 - T 13-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site RAM_14535 5269591cd95bb079e80a12fa1a495f3c 962 Gene3D G3DSA:3.40.50.200 468 655 2.3E-18 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RAM_14535 5269591cd95bb079e80a12fa1a495f3c 962 Gene3D G3DSA:2.60.120.260 779 939 7.7E-7 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_14535 5269591cd95bb079e80a12fa1a495f3c 962 Gene3D G3DSA:3.40.50.200 203 442 1.6E-6 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RAM_14535 5269591cd95bb079e80a12fa1a495f3c 962 Pfam PF00082 Subtilase family 300 644 6.6E-16 T 13-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RAM_14535 5269591cd95bb079e80a12fa1a495f3c 962 Pfam PF01483 Proprotein convertase P-domain 830 934 1.0E-6 T 13-10-2018 IPR002884 P domain GO:0004252|GO:0006508 RAM_14535 5269591cd95bb079e80a12fa1a495f3c 962 SUPERFAMILY SSF49785 786 940 1.83E-10 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_18005 8f3f10a5262f14648ccc2f4ac595d31f 590 SMART SM00388 374 438 1.8E-13 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_18005 8f3f10a5262f14648ccc2f4ac595d31f 590 SMART SM00387 476 588 2.4E-42 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_18005 8f3f10a5262f14648ccc2f4ac595d31f 590 PRINTS PR00344 Bacterial sensor protein C-terminal signature 513 527 1.0E-18 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_18005 8f3f10a5262f14648ccc2f4ac595d31f 590 PRINTS PR00344 Bacterial sensor protein C-terminal signature 531 541 1.0E-18 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_18005 8f3f10a5262f14648ccc2f4ac595d31f 590 PRINTS PR00344 Bacterial sensor protein C-terminal signature 548 566 1.0E-18 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_18005 8f3f10a5262f14648ccc2f4ac595d31f 590 PRINTS PR00344 Bacterial sensor protein C-terminal signature 572 585 1.0E-18 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_18005 8f3f10a5262f14648ccc2f4ac595d31f 590 Pfam PF00672 HAMP domain 322 369 7.6E-8 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_18005 8f3f10a5262f14648ccc2f4ac595d31f 590 SMART SM00304 321 373 9.5E-9 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_18005 8f3f10a5262f14648ccc2f4ac595d31f 590 SUPERFAMILY SSF47384 357 438 1.12E-14 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RAM_18005 8f3f10a5262f14648ccc2f4ac595d31f 590 Gene3D G3DSA:3.30.565.10 448 589 2.3E-43 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_18005 8f3f10a5262f14648ccc2f4ac595d31f 590 Pfam PF00512 His Kinase A (phospho-acceptor) domain 375 438 6.5E-13 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_18005 8f3f10a5262f14648ccc2f4ac595d31f 590 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 477 586 3.1E-28 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_18005 8f3f10a5262f14648ccc2f4ac595d31f 590 Gene3D G3DSA:1.10.287.130 319 432 1.2E-23 T 13-10-2018 RAM_18005 8f3f10a5262f14648ccc2f4ac595d31f 590 SUPERFAMILY SSF55874 427 586 1.44E-45 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_18005 8f3f10a5262f14648ccc2f4ac595d31f 590 SUPERFAMILY SSF158472 322 368 7.32E-7 T 13-10-2018 RAM_30680 deaa4b7112aeb88b8113d2e1e9a31a35 192 SUPERFAMILY SSF46894 128 191 4.08E-20 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_30680 deaa4b7112aeb88b8113d2e1e9a31a35 192 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 165 9.2E-15 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_30680 deaa4b7112aeb88b8113d2e1e9a31a35 192 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 135 149 9.2E-15 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_30680 deaa4b7112aeb88b8113d2e1e9a31a35 192 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 165 177 9.2E-15 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_30680 deaa4b7112aeb88b8113d2e1e9a31a35 192 SMART SM00421 132 189 2.5E-26 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_30680 deaa4b7112aeb88b8113d2e1e9a31a35 192 Gene3D G3DSA:3.40.50.12740 2 192 4.2E-58 T 13-10-2018 RAM_30680 deaa4b7112aeb88b8113d2e1e9a31a35 192 SMART SM00448 2 111 1.3E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_30680 deaa4b7112aeb88b8113d2e1e9a31a35 192 Pfam PF00196 Bacterial regulatory proteins, luxR family 134 187 4.8E-21 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_30680 deaa4b7112aeb88b8113d2e1e9a31a35 192 Pfam PF00072 Response regulator receiver domain 4 111 1.0E-19 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_30680 deaa4b7112aeb88b8113d2e1e9a31a35 192 ProSitePatterns PS00622 LuxR-type HTH domain signature. 149 176 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_30680 deaa4b7112aeb88b8113d2e1e9a31a35 192 SUPERFAMILY SSF52172 1 125 9.53E-27 T 13-10-2018 IPR011006 CheY-like superfamily RAM_35125 9c22e24edfa0169311d6e33ada595a22 156 TIGRFAM TIGR02246 TIGR02246: conserved hypothetical protein 30 153 9.4E-23 T 13-10-2018 IPR011944 Steroid delta5-4-isomerase KEGG: 00140+5.3.3.1|KEGG: 00984+5.3.3.1|MetaCyc: PWY-2582|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-699|MetaCyc: PWY-7299 RAM_35125 9c22e24edfa0169311d6e33ada595a22 156 SUPERFAMILY SSF54427 30 153 8.78E-24 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_35125 9c22e24edfa0169311d6e33ada595a22 156 Gene3D G3DSA:3.10.450.50 15 154 6.9E-29 T 13-10-2018 RAM_35125 9c22e24edfa0169311d6e33ada595a22 156 Pfam PF13474 SnoaL-like domain 42 153 6.0E-8 T 13-10-2018 IPR037401 SnoaL-like domain RAM_01835 8fcbcd2a35eb39a96b6a06230af9badf 157 Pfam PF00436 Single-strand binding protein family 3 103 5.7E-24 T 13-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 RAM_01835 8fcbcd2a35eb39a96b6a06230af9badf 157 Gene3D G3DSA:2.40.50.140 1 140 2.2E-33 T 13-10-2018 RAM_01835 8fcbcd2a35eb39a96b6a06230af9badf 157 Hamap MF_00984 Single-stranded DNA-binding protein. 1 110 23.507 T 13-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 RAM_01835 8fcbcd2a35eb39a96b6a06230af9badf 157 SUPERFAMILY SSF50249 4 157 2.86E-36 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_01835 8fcbcd2a35eb39a96b6a06230af9badf 157 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 3 112 1.2E-24 T 13-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 RAM_40790 949a3ae017c60ae70e2813d449c5b32c 518 Pfam PF13556 PucR C-terminal helix-turn-helix domain 456 512 5.5E-18 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain RAM_40790 949a3ae017c60ae70e2813d449c5b32c 518 Gene3D G3DSA:1.10.10.2840 385 518 1.5E-19 T 13-10-2018 RAM_03665 15be8bab26000a59e779c295c8c35ee6 454 TIGRFAM TIGR03920 T7SS_EccD: type VII secretion integral membrane protein EccD 1 450 3.9E-88 T 13-10-2018 IPR006707 Type VII secretion system membrane protein EccD RAM_03665 15be8bab26000a59e779c295c8c35ee6 454 Gene3D G3DSA:3.10.20.90 1 75 1.3E-12 T 13-10-2018 RAM_03665 15be8bab26000a59e779c295c8c35ee6 454 PIRSF PIRSF017804 1 453 1.9E-111 T 13-10-2018 IPR006707 Type VII secretion system membrane protein EccD RAM_03665 15be8bab26000a59e779c295c8c35ee6 454 Pfam PF08817 WXG100 protein secretion system (Wss), protein YukD 1 74 9.0E-22 T 13-10-2018 IPR024962 YukD-like RAM_30620 975276aeedf6f23a16df45f5c5b6c3dc 790 Pfam PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain 65 378 2.8E-66 T 13-10-2018 IPR012970 Polysaccharide lyase 8, N-terminal alpha-helical RAM_30620 975276aeedf6f23a16df45f5c5b6c3dc 790 Gene3D G3DSA:2.70.98.10 429 698 1.7E-81 T 13-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 RAM_30620 975276aeedf6f23a16df45f5c5b6c3dc 790 SUPERFAMILY SSF74650 430 691 1.73E-70 T 13-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 RAM_30620 975276aeedf6f23a16df45f5c5b6c3dc 790 Pfam PF02278 Polysaccharide lyase family 8, super-sandwich domain 431 691 2.7E-70 T 13-10-2018 IPR003159 Polysaccharide lyase family 8, central domain GO:0005576|GO:0016829 RAM_30620 975276aeedf6f23a16df45f5c5b6c3dc 790 Gene3D G3DSA:2.60.220.10 701 787 3.7E-20 T 13-10-2018 IPR011071 Polysaccharide lyase family 8-like, C-terminal GO:0005975 RAM_30620 975276aeedf6f23a16df45f5c5b6c3dc 790 SUPERFAMILY SSF49863 702 789 2.75E-17 T 13-10-2018 IPR011071 Polysaccharide lyase family 8-like, C-terminal GO:0005975 RAM_30620 975276aeedf6f23a16df45f5c5b6c3dc 790 Gene3D G3DSA:1.50.10.100 44 409 2.4E-93 T 13-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 RAM_30620 975276aeedf6f23a16df45f5c5b6c3dc 790 Pfam PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain 703 766 4.7E-14 T 13-10-2018 IPR004103 Polysaccharide lyase family 8, C-terminal GO:0005576|GO:0016829 RAM_30620 975276aeedf6f23a16df45f5c5b6c3dc 790 SUPERFAMILY SSF48230 62 451 6.87E-70 T 13-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 RAM_38700 f56f957ceb8ebc5ec4a3d1280fd0d027 377 Gene3D G3DSA:3.40.50.2000 176 341 6.6E-38 T 13-10-2018 RAM_38700 f56f957ceb8ebc5ec4a3d1280fd0d027 377 SUPERFAMILY SSF53756 9 357 5.02E-71 T 13-10-2018 RAM_38700 f56f957ceb8ebc5ec4a3d1280fd0d027 377 Pfam PF00534 Glycosyl transferases group 1 179 335 1.1E-29 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 RAM_38700 f56f957ceb8ebc5ec4a3d1280fd0d027 377 Gene3D G3DSA:3.40.50.2000 8 173 1.2E-17 T 13-10-2018 RAM_38700 f56f957ceb8ebc5ec4a3d1280fd0d027 377 Pfam PF13439 Glycosyltransferase Family 4 15 171 2.3E-22 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 RAM_44335 7b6164911bdabd4c99eadc6baf5304e1 303 Pfam PF00107 Zinc-binding dehydrogenase 155 241 4.0E-9 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RAM_44335 7b6164911bdabd4c99eadc6baf5304e1 303 Gene3D G3DSA:3.40.50.720 128 252 1.1E-65 T 13-10-2018 RAM_44335 7b6164911bdabd4c99eadc6baf5304e1 303 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 90 1.1E-7 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_44335 7b6164911bdabd4c99eadc6baf5304e1 303 SUPERFAMILY SSF50129 2 153 3.2E-31 T 13-10-2018 IPR011032 GroES-like superfamily RAM_44335 7b6164911bdabd4c99eadc6baf5304e1 303 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 144 165 - T 13-10-2018 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 RAM_44335 7b6164911bdabd4c99eadc6baf5304e1 303 Gene3D G3DSA:3.90.180.10 9 300 1.1E-65 T 13-10-2018 RAM_44335 7b6164911bdabd4c99eadc6baf5304e1 303 SUPERFAMILY SSF51735 117 240 8.51E-21 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_44335 7b6164911bdabd4c99eadc6baf5304e1 303 SMART SM00829 11 301 3.8E-13 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_27915 1bc4c8eded228d0fdec59c0814a3df82 1115 TIGRFAM TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit 16 533 1.7E-178 T 13-10-2018 IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD GO:0005524|GO:0016020|GO:0042883 RAM_27915 1bc4c8eded228d0fdec59c0814a3df82 1115 Pfam PF00664 ABC transporter transmembrane region 25 280 2.1E-17 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 RAM_27915 1bc4c8eded228d0fdec59c0814a3df82 1115 SUPERFAMILY SSF52540 896 1097 2.57E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_27915 1bc4c8eded228d0fdec59c0814a3df82 1115 Gene3D G3DSA:1.20.1560.10 571 881 4.5E-26 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RAM_27915 1bc4c8eded228d0fdec59c0814a3df82 1115 ProSitePatterns PS00211 ABC transporters family signature. 1037 1051 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_27915 1bc4c8eded228d0fdec59c0814a3df82 1115 SUPERFAMILY SSF90123 2 320 1.44E-46 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RAM_27915 1bc4c8eded228d0fdec59c0814a3df82 1115 SUPERFAMILY SSF90123 570 885 2.49E-35 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RAM_27915 1bc4c8eded228d0fdec59c0814a3df82 1115 Gene3D G3DSA:1.20.1560.10 4 319 2.3E-38 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RAM_27915 1bc4c8eded228d0fdec59c0814a3df82 1115 Pfam PF00005 ABC transporter 349 490 3.7E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_27915 1bc4c8eded228d0fdec59c0814a3df82 1115 Gene3D G3DSA:3.40.50.300 895 1112 4.8E-58 T 13-10-2018 RAM_27915 1bc4c8eded228d0fdec59c0814a3df82 1115 SUPERFAMILY SSF52540 333 534 1.25E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_27915 1bc4c8eded228d0fdec59c0814a3df82 1115 Pfam PF00005 ABC transporter 917 1065 1.7E-26 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_27915 1bc4c8eded228d0fdec59c0814a3df82 1115 TIGRFAM TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit 573 1095 1.2E-157 T 13-10-2018 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC GO:0016021|GO:0034775|GO:0042626|GO:0045454 RAM_27915 1bc4c8eded228d0fdec59c0814a3df82 1115 SMART SM00382 358 535 1.7E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_27915 1bc4c8eded228d0fdec59c0814a3df82 1115 SMART SM00382 925 1110 3.1E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_27915 1bc4c8eded228d0fdec59c0814a3df82 1115 Gene3D G3DSA:3.40.50.300 326 543 3.2E-61 T 13-10-2018 RAM_04845 5012013ec1faea919160953943b6b959 138 PRINTS PR00598 Bacterial regulatory protein MarR family signature 87 103 3.1E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_04845 5012013ec1faea919160953943b6b959 138 PRINTS PR00598 Bacterial regulatory protein MarR family signature 51 67 3.1E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_04845 5012013ec1faea919160953943b6b959 138 PRINTS PR00598 Bacterial regulatory protein MarR family signature 68 83 3.1E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_04845 5012013ec1faea919160953943b6b959 138 Gene3D G3DSA:1.10.10.10 2 138 5.7E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_04845 5012013ec1faea919160953943b6b959 138 SUPERFAMILY SSF46785 3 132 2.22E-25 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_04845 5012013ec1faea919160953943b6b959 138 Pfam PF12802 MarR family 30 91 4.7E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_04845 5012013ec1faea919160953943b6b959 138 SMART SM00347 25 128 1.6E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_11125 ed42eafc43fabc65c28dbf9f9bfd580e 280 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 1 274 25.216 T 13-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RAM_11125 ed42eafc43fabc65c28dbf9f9bfd580e 280 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 4 278 2.9E-67 T 13-10-2018 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234 RAM_11125 ed42eafc43fabc65c28dbf9f9bfd580e 280 ProSitePatterns PS01058 SAICAR synthetase signature 2. 186 194 - T 13-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RAM_11125 ed42eafc43fabc65c28dbf9f9bfd580e 280 Pfam PF01259 SAICAR synthetase 4 248 3.4E-95 T 13-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RAM_11125 ed42eafc43fabc65c28dbf9f9bfd580e 280 Gene3D G3DSA:3.30.200.20 1 85 6.3E-30 T 13-10-2018 RAM_11125 ed42eafc43fabc65c28dbf9f9bfd580e 280 SUPERFAMILY SSF56104 1 277 1.31E-94 T 13-10-2018 RAM_11125 ed42eafc43fabc65c28dbf9f9bfd580e 280 Gene3D G3DSA:3.30.470.20 86 230 4.1E-53 T 13-10-2018 RAM_03315 d51529671dcd1822ea26a8c43489b250 424 PRINTS PR00359 B-class P450 signature 212 234 1.5E-43 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03315 d51529671dcd1822ea26a8c43489b250 424 PRINTS PR00359 B-class P450 signature 372 383 1.5E-43 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03315 d51529671dcd1822ea26a8c43489b250 424 PRINTS PR00359 B-class P450 signature 160 176 1.5E-43 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03315 d51529671dcd1822ea26a8c43489b250 424 PRINTS PR00359 B-class P450 signature 311 338 1.5E-43 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03315 d51529671dcd1822ea26a8c43489b250 424 PRINTS PR00359 B-class P450 signature 339 354 1.5E-43 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03315 d51529671dcd1822ea26a8c43489b250 424 PRINTS PR00359 B-class P450 signature 177 192 1.5E-43 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03315 d51529671dcd1822ea26a8c43489b250 424 PRINTS PR00359 B-class P450 signature 110 121 1.5E-43 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03315 d51529671dcd1822ea26a8c43489b250 424 PRINTS PR00359 B-class P450 signature 294 305 1.5E-43 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03315 d51529671dcd1822ea26a8c43489b250 424 PRINTS PR00359 B-class P450 signature 363 372 1.5E-43 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03315 d51529671dcd1822ea26a8c43489b250 424 PRINTS PR00385 P450 superfamily signature 259 276 1.6E-5 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_03315 d51529671dcd1822ea26a8c43489b250 424 PRINTS PR00385 P450 superfamily signature 372 383 1.6E-5 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_03315 d51529671dcd1822ea26a8c43489b250 424 PRINTS PR00385 P450 superfamily signature 363 372 1.6E-5 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_03315 d51529671dcd1822ea26a8c43489b250 424 PRINTS PR00385 P450 superfamily signature 294 305 1.6E-5 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_03315 d51529671dcd1822ea26a8c43489b250 424 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 365 374 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RAM_03315 d51529671dcd1822ea26a8c43489b250 424 Gene3D G3DSA:1.10.630.10 4 424 4.5E-118 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_03315 d51529671dcd1822ea26a8c43489b250 424 Pfam PF00067 Cytochrome P450 294 393 1.2E-16 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_03315 d51529671dcd1822ea26a8c43489b250 424 SUPERFAMILY SSF48264 14 423 2.75E-91 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_24470 611fd35bef8af7dd564f633b2aa5c39f 979 SUPERFAMILY SSF52540 273 542 6.88E-29 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_24470 611fd35bef8af7dd564f633b2aa5c39f 979 Pfam PF13424 Tetratricopeptide repeat 897 951 1.1E-7 T 13-10-2018 RAM_24470 611fd35bef8af7dd564f633b2aa5c39f 979 SUPERFAMILY SSF48452 101 273 8.67E-38 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_24470 611fd35bef8af7dd564f633b2aa5c39f 979 SMART SM00028 855 888 150.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_24470 611fd35bef8af7dd564f633b2aa5c39f 979 SMART SM00028 815 848 72.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_24470 611fd35bef8af7dd564f633b2aa5c39f 979 SMART SM00028 111 144 360.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_24470 611fd35bef8af7dd564f633b2aa5c39f 979 SMART SM00028 735 768 280.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_24470 611fd35bef8af7dd564f633b2aa5c39f 979 SMART SM00028 895 928 0.56 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_24470 611fd35bef8af7dd564f633b2aa5c39f 979 Gene3D G3DSA:1.25.40.10 700 834 1.5E-13 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_24470 611fd35bef8af7dd564f633b2aa5c39f 979 Gene3D G3DSA:1.25.40.10 835 952 7.0E-18 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_24470 611fd35bef8af7dd564f633b2aa5c39f 979 Pfam PF03704 Bacterial transcriptional activator domain 106 250 9.0E-44 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_24470 611fd35bef8af7dd564f633b2aa5c39f 979 SUPERFAMILY SSF48452 725 928 4.67E-22 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_24470 611fd35bef8af7dd564f633b2aa5c39f 979 SUPERFAMILY SSF46894 12 99 2.38E-13 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_24470 611fd35bef8af7dd564f633b2aa5c39f 979 SMART SM00382 310 463 2.2E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_24470 611fd35bef8af7dd564f633b2aa5c39f 979 Gene3D G3DSA:3.40.50.300 274 434 3.7E-25 T 13-10-2018 RAM_24470 611fd35bef8af7dd564f633b2aa5c39f 979 PRINTS PR00364 Disease resistance protein signature 313 328 2.3E-10 T 13-10-2018 RAM_24470 611fd35bef8af7dd564f633b2aa5c39f 979 PRINTS PR00364 Disease resistance protein signature 391 405 2.3E-10 T 13-10-2018 RAM_24470 611fd35bef8af7dd564f633b2aa5c39f 979 PRINTS PR00364 Disease resistance protein signature 476 490 2.3E-10 T 13-10-2018 RAM_24470 611fd35bef8af7dd564f633b2aa5c39f 979 SMART SM00862 25 99 4.8E-8 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_24470 611fd35bef8af7dd564f633b2aa5c39f 979 SMART SM01043 106 250 4.7E-47 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_24470 611fd35bef8af7dd564f633b2aa5c39f 979 Pfam PF00931 NB-ARC domain 310 495 6.2E-17 T 13-10-2018 IPR002182 NB-ARC GO:0043531 Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-6798695|Reactome: R-HSA-6803207|Reactome: R-HSA-8953750 RAM_24470 611fd35bef8af7dd564f633b2aa5c39f 979 Gene3D G3DSA:1.10.10.10 2 102 2.1E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_24470 611fd35bef8af7dd564f633b2aa5c39f 979 Pfam PF00486 Transcriptional regulatory protein, C terminal 32 99 6.7E-10 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_24470 611fd35bef8af7dd564f633b2aa5c39f 979 Gene3D G3DSA:1.25.40.10 104 273 2.1E-47 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_04440 40d219e354cd2b11916fcc8409c59e84 334 SUPERFAMILY SSF50129 1 171 8.07E-56 T 13-10-2018 IPR011032 GroES-like superfamily RAM_04440 40d219e354cd2b11916fcc8409c59e84 334 SMART SM00829 7 327 6.3E-7 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_04440 40d219e354cd2b11916fcc8409c59e84 334 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 58 72 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 RAM_04440 40d219e354cd2b11916fcc8409c59e84 334 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 131 9.6E-33 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_04440 40d219e354cd2b11916fcc8409c59e84 334 Gene3D G3DSA:3.90.180.10 10 316 1.8E-100 T 13-10-2018 RAM_04440 40d219e354cd2b11916fcc8409c59e84 334 Gene3D G3DSA:3.40.50.720 149 277 1.8E-100 T 13-10-2018 RAM_04440 40d219e354cd2b11916fcc8409c59e84 334 Pfam PF00107 Zinc-binding dehydrogenase 173 291 1.2E-15 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RAM_04440 40d219e354cd2b11916fcc8409c59e84 334 SUPERFAMILY SSF51735 136 320 8.4E-31 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_28990 f508dec6d4f879024b0b43d78a1aaca2 240 Gene3D G3DSA:1.10.357.10 5 218 7.3E-22 T 13-10-2018 RAM_28990 f508dec6d4f879024b0b43d78a1aaca2 240 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 2.5E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_28990 f508dec6d4f879024b0b43d78a1aaca2 240 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 2.5E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_28990 f508dec6d4f879024b0b43d78a1aaca2 240 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 58 1.3E-13 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_28990 f508dec6d4f879024b0b43d78a1aaca2 240 ProSitePatterns PS01081 TetR-type HTH domain signature. 27 58 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RAM_28990 f508dec6d4f879024b0b43d78a1aaca2 240 SUPERFAMILY SSF46689 6 82 4.99E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_36900 443ec32812950e5f2f233d2b98145522 331 Gene3D G3DSA:3.10.180.10 3 140 1.3E-34 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_36900 443ec32812950e5f2f233d2b98145522 331 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 169 279 1.5E-9 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RAM_36900 443ec32812950e5f2f233d2b98145522 331 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 18 105 4.7E-8 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RAM_36900 443ec32812950e5f2f233d2b98145522 331 Gene3D G3DSA:3.10.180.10 155 316 3.8E-35 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_36900 443ec32812950e5f2f233d2b98145522 331 SUPERFAMILY SSF54593 12 285 4.28E-32 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_05480 37a0ddd4b22126d614558f258d5c3cf6 398 Gene3D G3DSA:2.40.110.10 125 247 1.7E-34 T 13-10-2018 RAM_05480 37a0ddd4b22126d614558f258d5c3cf6 398 SUPERFAMILY SSF56645 9 251 8.51E-72 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_05480 37a0ddd4b22126d614558f258d5c3cf6 398 Gene3D G3DSA:1.10.540.10 2 122 1.4E-38 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_05480 37a0ddd4b22126d614558f258d5c3cf6 398 PIRSF PIRSF016578 5 197 4.1E-10 T 13-10-2018 RAM_05480 37a0ddd4b22126d614558f258d5c3cf6 398 PIRSF PIRSF016578 231 374 1.3E-10 T 13-10-2018 RAM_05480 37a0ddd4b22126d614558f258d5c3cf6 398 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 11 122 2.3E-35 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_05480 37a0ddd4b22126d614558f258d5c3cf6 398 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 242 390 2.6E-46 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_05480 37a0ddd4b22126d614558f258d5c3cf6 398 SUPERFAMILY SSF47203 241 395 1.21E-53 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_05480 37a0ddd4b22126d614558f258d5c3cf6 398 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 126 228 5.8E-21 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RAM_05480 37a0ddd4b22126d614558f258d5c3cf6 398 Gene3D G3DSA:1.20.140.10 248 395 8.9E-49 T 13-10-2018 RAM_15460 11ce5a7b6d708e795da61f594af30736 724 Gene3D G3DSA:3.30.365.10 121 343 4.3E-81 T 13-10-2018 RAM_15460 11ce5a7b6d708e795da61f594af30736 724 Gene3D G3DSA:3.30.365.10 10 271 4.3E-81 T 13-10-2018 RAM_15460 11ce5a7b6d708e795da61f594af30736 724 SUPERFAMILY SSF54665 2 121 1.57E-35 T 13-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily RAM_15460 11ce5a7b6d708e795da61f594af30736 724 SUPERFAMILY SSF56003 112 723 3.27E-154 T 13-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 RAM_15460 11ce5a7b6d708e795da61f594af30736 724 SMART SM01008 12 120 1.5E-41 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RAM_15460 11ce5a7b6d708e795da61f594af30736 724 Gene3D G3DSA:3.30.365.10 355 720 9.1E-96 T 13-10-2018 RAM_15460 11ce5a7b6d708e795da61f594af30736 724 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 155 665 2.8E-114 T 13-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RAM_15460 11ce5a7b6d708e795da61f594af30736 724 Gene3D G3DSA:3.30.365.10 426 580 9.1E-96 T 13-10-2018 RAM_15460 11ce5a7b6d708e795da61f594af30736 724 Gene3D G3DSA:3.90.1170.50 27 120 4.3E-81 T 13-10-2018 RAM_15460 11ce5a7b6d708e795da61f594af30736 724 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 12 120 2.7E-24 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RAM_16100 3f95f701f358f190fb2ad05ed1fb10e2 205 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 4.4E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_16100 3f95f701f358f190fb2ad05ed1fb10e2 205 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 4.4E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_16100 3f95f701f358f190fb2ad05ed1fb10e2 205 Gene3D G3DSA:1.10.357.10 1 197 4.7E-35 T 13-10-2018 RAM_16100 3f95f701f358f190fb2ad05ed1fb10e2 205 SUPERFAMILY SSF46689 2 80 3.39E-20 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_16100 3f95f701f358f190fb2ad05ed1fb10e2 205 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 58 1.2E-16 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_13105 116db7f571431edb45e6a8453be10d8e 1046 Pfam PF00873 AcrB/AcrD/AcrF family 5 1014 1.1E-220 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RAM_13105 116db7f571431edb45e6a8453be10d8e 1046 SUPERFAMILY SSF82866 794 1019 1.31E-45 T 13-10-2018 RAM_13105 116db7f571431edb45e6a8453be10d8e 1046 SUPERFAMILY SSF82693 42 126 3.84E-23 T 13-10-2018 RAM_13105 116db7f571431edb45e6a8453be10d8e 1046 PRINTS PR00702 Acriflavin resistance protein family signature 39 57 1.4E-42 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RAM_13105 116db7f571431edb45e6a8453be10d8e 1046 PRINTS PR00702 Acriflavin resistance protein family signature 389 413 1.4E-42 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RAM_13105 116db7f571431edb45e6a8453be10d8e 1046 PRINTS PR00702 Acriflavin resistance protein family signature 11 35 1.4E-42 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RAM_13105 116db7f571431edb45e6a8453be10d8e 1046 PRINTS PR00702 Acriflavin resistance protein family signature 361 382 1.4E-42 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RAM_13105 116db7f571431edb45e6a8453be10d8e 1046 PRINTS PR00702 Acriflavin resistance protein family signature 442 465 1.4E-42 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RAM_13105 116db7f571431edb45e6a8453be10d8e 1046 PRINTS PR00702 Acriflavin resistance protein family signature 334 357 1.4E-42 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RAM_13105 116db7f571431edb45e6a8453be10d8e 1046 PRINTS PR00702 Acriflavin resistance protein family signature 467 490 1.4E-42 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RAM_13105 116db7f571431edb45e6a8453be10d8e 1046 Gene3D G3DSA:3.30.2090.10 177 275 2.8E-276 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RAM_13105 116db7f571431edb45e6a8453be10d8e 1046 Gene3D G3DSA:3.30.70.1440 663 853 2.8E-276 T 13-10-2018 RAM_13105 116db7f571431edb45e6a8453be10d8e 1046 SUPERFAMILY SSF82866 298 495 9.29E-44 T 13-10-2018 RAM_13105 116db7f571431edb45e6a8453be10d8e 1046 SUPERFAMILY SSF82714 181 271 6.41E-12 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RAM_13105 116db7f571431edb45e6a8453be10d8e 1046 SUPERFAMILY SSF82714 711 792 4.05E-11 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RAM_13105 116db7f571431edb45e6a8453be10d8e 1046 Gene3D G3DSA:3.30.70.1430 568 662 2.8E-276 T 13-10-2018 RAM_13105 116db7f571431edb45e6a8453be10d8e 1046 Gene3D G3DSA:3.30.2090.10 710 796 2.8E-276 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RAM_13105 116db7f571431edb45e6a8453be10d8e 1046 SUPERFAMILY SSF82693 139 326 2.14E-12 T 13-10-2018 RAM_13105 116db7f571431edb45e6a8453be10d8e 1046 Gene3D G3DSA:3.30.70.1320 134 330 2.8E-276 T 13-10-2018 RAM_13105 116db7f571431edb45e6a8453be10d8e 1046 Gene3D G3DSA:1.20.1640.10 12 512 2.8E-276 T 13-10-2018 RAM_13105 116db7f571431edb45e6a8453be10d8e 1046 Gene3D G3DSA:3.30.70.1430 41 804 2.8E-276 T 13-10-2018 RAM_13105 116db7f571431edb45e6a8453be10d8e 1046 Gene3D G3DSA:1.20.1640.10 513 1011 2.8E-276 T 13-10-2018 RAM_27075 af2c198d9f9570dbf7a92bfe91bfce08 327 Pfam PF01022 Bacterial regulatory protein, arsR family 264 299 1.4E-5 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_27075 af2c198d9f9570dbf7a92bfe91bfce08 327 Gene3D G3DSA:1.10.10.10 247 323 3.1E-11 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_27075 af2c198d9f9570dbf7a92bfe91bfce08 327 SMART SM00418 248 324 0.0012 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_27075 af2c198d9f9570dbf7a92bfe91bfce08 327 SUPERFAMILY SSF46785 266 318 7.52E-11 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_42790 d3c345d42810d3c745e393c15a0660e6 469 Pfam PF00672 HAMP domain 192 238 3.2E-12 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_42790 d3c345d42810d3c745e393c15a0660e6 469 SMART SM00387 357 468 1.7E-34 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_42790 d3c345d42810d3c745e393c15a0660e6 469 Gene3D G3DSA:1.10.287.130 196 318 4.5E-27 T 13-10-2018 RAM_42790 d3c345d42810d3c745e393c15a0660e6 469 Pfam PF00512 His Kinase A (phospho-acceptor) domain 246 316 2.4E-13 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_42790 d3c345d42810d3c745e393c15a0660e6 469 SMART SM00388 245 317 2.1E-12 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_42790 d3c345d42810d3c745e393c15a0660e6 469 PRINTS PR00344 Bacterial sensor protein C-terminal signature 413 423 1.4E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_42790 d3c345d42810d3c745e393c15a0660e6 469 PRINTS PR00344 Bacterial sensor protein C-terminal signature 395 409 1.4E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_42790 d3c345d42810d3c745e393c15a0660e6 469 PRINTS PR00344 Bacterial sensor protein C-terminal signature 452 465 1.4E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_42790 d3c345d42810d3c745e393c15a0660e6 469 PRINTS PR00344 Bacterial sensor protein C-terminal signature 428 446 1.4E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_42790 d3c345d42810d3c745e393c15a0660e6 469 SUPERFAMILY SSF47384 228 316 4.71E-14 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RAM_42790 d3c345d42810d3c745e393c15a0660e6 469 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 357 465 2.0E-22 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_42790 d3c345d42810d3c745e393c15a0660e6 469 SMART SM00304 192 244 9.9E-11 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_42790 d3c345d42810d3c745e393c15a0660e6 469 Gene3D G3DSA:3.30.565.10 320 467 6.9E-36 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_42790 d3c345d42810d3c745e393c15a0660e6 469 SUPERFAMILY SSF55874 307 465 1.44E-37 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_42790 d3c345d42810d3c745e393c15a0660e6 469 SUPERFAMILY SSF158472 195 240 6.28E-6 T 13-10-2018 RAM_06385 ecf4be1e5055e440e558d4fd4980ce23 213 Pfam PF00072 Response regulator receiver domain 3 108 8.1E-18 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_06385 ecf4be1e5055e440e558d4fd4980ce23 213 SMART SM00421 147 204 1.8E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_06385 ecf4be1e5055e440e558d4fd4980ce23 213 Gene3D G3DSA:3.40.50.12740 1 206 1.3E-46 T 13-10-2018 RAM_06385 ecf4be1e5055e440e558d4fd4980ce23 213 Pfam PF00196 Bacterial regulatory proteins, luxR family 149 195 2.2E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_06385 ecf4be1e5055e440e558d4fd4980ce23 213 SUPERFAMILY SSF46894 136 199 8.5E-15 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_06385 ecf4be1e5055e440e558d4fd4980ce23 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 180 1.0E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_06385 ecf4be1e5055e440e558d4fd4980ce23 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 192 1.0E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_06385 ecf4be1e5055e440e558d4fd4980ce23 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 164 1.0E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_06385 ecf4be1e5055e440e558d4fd4980ce23 213 SUPERFAMILY SSF52172 1 132 1.57E-20 T 13-10-2018 IPR011006 CheY-like superfamily RAM_06385 ecf4be1e5055e440e558d4fd4980ce23 213 SMART SM00448 1 120 4.6E-13 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_45620 d74cd7ab14f020ed67738f40f66cebce 322 Gene3D G3DSA:1.10.10.10 1 90 8.9E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_45620 d74cd7ab14f020ed67738f40f66cebce 322 Gene3D G3DSA:3.40.190.10 91 305 1.2E-27 T 13-10-2018 RAM_45620 d74cd7ab14f020ed67738f40f66cebce 322 Pfam PF03466 LysR substrate binding domain 87 252 2.1E-26 T 13-10-2018 IPR005119 LysR, substrate-binding RAM_45620 d74cd7ab14f020ed67738f40f66cebce 322 Gene3D G3DSA:3.40.190.10 168 291 1.2E-27 T 13-10-2018 RAM_45620 d74cd7ab14f020ed67738f40f66cebce 322 SUPERFAMILY SSF53850 89 320 2.48E-25 T 13-10-2018 RAM_45620 d74cd7ab14f020ed67738f40f66cebce 322 SUPERFAMILY SSF46785 2 111 1.01E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_45620 d74cd7ab14f020ed67738f40f66cebce 322 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 6.1E-18 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_38860 42a743e4b274571d91a3f7c753028037 377 Gene3D G3DSA:3.50.50.60 113 229 6.3E-93 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_38860 42a743e4b274571d91a3f7c753028037 377 SUPERFAMILY SSF55424 300 372 7.28E-14 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RAM_38860 42a743e4b274571d91a3f7c753028037 377 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 222 238 1.9E-22 T 13-10-2018 RAM_38860 42a743e4b274571d91a3f7c753028037 377 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 247 269 1.9E-22 T 13-10-2018 RAM_38860 42a743e4b274571d91a3f7c753028037 377 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 1.9E-22 T 13-10-2018 RAM_38860 42a743e4b274571d91a3f7c753028037 377 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 100 118 1.9E-22 T 13-10-2018 RAM_38860 42a743e4b274571d91a3f7c753028037 377 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 141 159 1.9E-22 T 13-10-2018 RAM_38860 42a743e4b274571d91a3f7c753028037 377 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 2 286 2.0E-52 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAM_38860 42a743e4b274571d91a3f7c753028037 377 SUPERFAMILY SSF51905 2 183 3.05E-38 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_38860 42a743e4b274571d91a3f7c753028037 377 SUPERFAMILY SSF51905 140 297 3.72E-24 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_38860 42a743e4b274571d91a3f7c753028037 377 Pfam PF14759 Reductase C-terminal 307 368 3.5E-10 T 13-10-2018 IPR028202 Reductase, C-terminal RAM_38860 42a743e4b274571d91a3f7c753028037 377 Gene3D G3DSA:3.50.50.60 4 286 6.3E-93 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_38860 42a743e4b274571d91a3f7c753028037 377 Gene3D G3DSA:3.30.390.30 307 376 6.4E-11 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RAM_38860 42a743e4b274571d91a3f7c753028037 377 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 137 161 2.7E-9 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAM_38860 42a743e4b274571d91a3f7c753028037 377 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 257 275 2.7E-9 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAM_38860 42a743e4b274571d91a3f7c753028037 377 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 3 25 2.7E-9 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAM_38860 42a743e4b274571d91a3f7c753028037 377 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 101 109 2.7E-9 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAM_38860 42a743e4b274571d91a3f7c753028037 377 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 224 245 2.7E-9 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAM_38830 55d2cea06bcbbc95b1459e7b0ad8679b 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 23 36 6.8E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_38830 55d2cea06bcbbc95b1459e7b0ad8679b 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 44 67 6.8E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_38830 55d2cea06bcbbc95b1459e7b0ad8679b 192 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 67 1.3E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_38830 55d2cea06bcbbc95b1459e7b0ad8679b 192 Gene3D G3DSA:1.10.357.10 6 189 1.8E-50 T 13-10-2018 RAM_38830 55d2cea06bcbbc95b1459e7b0ad8679b 192 SUPERFAMILY SSF46689 9 90 4.29E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_33695 b113d7a339643ac67355ca026704be4e 987 Gene3D G3DSA:3.30.465.40 30 204 3.4E-37 T 13-10-2018 RAM_33695 b113d7a339643ac67355ca026704be4e 987 SUPERFAMILY SSF46548 566 658 3.4E-9 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 RAM_33695 b113d7a339643ac67355ca026704be4e 987 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 640 651 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RAM_33695 b113d7a339643ac67355ca026704be4e 987 Gene3D G3DSA:3.30.70.2740 410 492 6.5E-7 T 13-10-2018 RAM_33695 b113d7a339643ac67355ca026704be4e 987 Pfam PF13183 4Fe-4S dicluster domain 571 654 3.1E-10 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RAM_33695 b113d7a339643ac67355ca026704be4e 987 Pfam PF02913 FAD linked oxidases, C-terminal domain 282 532 1.1E-44 T 13-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 RAM_33695 b113d7a339643ac67355ca026704be4e 987 Pfam PF01565 FAD binding domain 55 193 2.2E-37 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RAM_33695 b113d7a339643ac67355ca026704be4e 987 Pfam PF02754 Cysteine-rich domain 760 834 0.14 T 13-10-2018 IPR004017 Cysteine-rich domain RAM_33695 b113d7a339643ac67355ca026704be4e 987 SUPERFAMILY SSF55103 283 543 5.23E-51 T 13-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 RAM_33695 b113d7a339643ac67355ca026704be4e 987 SUPERFAMILY SSF56176 20 278 7.36E-48 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RAM_15715 dcb31b4d098ea6b47ec2a8027928cb52 499 Gene3D G3DSA:3.40.50.300 243 485 5.4E-41 T 13-10-2018 RAM_15715 dcb31b4d098ea6b47ec2a8027928cb52 499 SMART SM00382 31 227 3.4E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_15715 dcb31b4d098ea6b47ec2a8027928cb52 499 SMART SM00382 281 473 2.3E-5 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_15715 dcb31b4d098ea6b47ec2a8027928cb52 499 Gene3D G3DSA:3.40.50.300 4 239 2.7E-56 T 13-10-2018 RAM_15715 dcb31b4d098ea6b47ec2a8027928cb52 499 SUPERFAMILY SSF52540 270 478 7.39E-38 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_15715 dcb31b4d098ea6b47ec2a8027928cb52 499 Pfam PF00005 ABC transporter 273 426 4.1E-18 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_15715 dcb31b4d098ea6b47ec2a8027928cb52 499 ProSitePatterns PS00211 ABC transporters family signature. 399 413 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_15715 dcb31b4d098ea6b47ec2a8027928cb52 499 Pfam PF00005 ABC transporter 22 171 5.4E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_15715 dcb31b4d098ea6b47ec2a8027928cb52 499 SUPERFAMILY SSF52540 5 230 4.22E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_42615 e63de75f368c68fb985e5468d34689d5 717 SUPERFAMILY SSF48452 534 669 2.28E-8 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_42615 e63de75f368c68fb985e5468d34689d5 717 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 200 223 - T 13-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 RAM_42615 e63de75f368c68fb985e5468d34689d5 717 SMART SM00220 194 482 2.4E-50 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_42615 e63de75f368c68fb985e5468d34689d5 717 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 339 351 - T 13-10-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 RAM_42615 e63de75f368c68fb985e5468d34689d5 717 Gene3D G3DSA:1.10.510.10 297 496 4.8E-43 T 13-10-2018 RAM_42615 e63de75f368c68fb985e5468d34689d5 717 SUPERFAMILY SSF56112 185 480 6.07E-63 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_42615 e63de75f368c68fb985e5468d34689d5 717 Pfam PF00069 Protein kinase domain 194 475 1.3E-38 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_42615 e63de75f368c68fb985e5468d34689d5 717 Gene3D G3DSA:3.30.200.20 184 295 7.9E-24 T 13-10-2018 RAM_42615 e63de75f368c68fb985e5468d34689d5 717 Gene3D G3DSA:1.25.40.10 526 708 2.5E-11 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_39535 e0c47a68fa545efe6da4c66b8040572d 305 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 254 296 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RAM_39535 e0c47a68fa545efe6da4c66b8040572d 305 SUPERFAMILY SSF46689 201 251 1.08E-9 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_39535 e0c47a68fa545efe6da4c66b8040572d 305 Gene3D G3DSA:3.40.50.880 2 199 4.0E-51 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_39535 e0c47a68fa545efe6da4c66b8040572d 305 SMART SM00342 217 300 8.9E-29 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_39535 e0c47a68fa545efe6da4c66b8040572d 305 Gene3D G3DSA:1.10.10.60 201 305 1.9E-28 T 13-10-2018 RAM_39535 e0c47a68fa545efe6da4c66b8040572d 305 Pfam PF01965 DJ-1/PfpI family 45 162 2.6E-16 T 13-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 RAM_39535 e0c47a68fa545efe6da4c66b8040572d 305 Pfam PF12833 Helix-turn-helix domain 223 301 1.6E-21 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_39535 e0c47a68fa545efe6da4c66b8040572d 305 SUPERFAMILY SSF52317 1 183 1.07E-45 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_39535 e0c47a68fa545efe6da4c66b8040572d 305 SUPERFAMILY SSF46689 254 303 1.21E-9 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_08395 6e1410fb50cad7108e74ac67ef661f3c 281 Gene3D G3DSA:3.30.1180.10 155 280 9.7E-34 T 13-10-2018 RAM_08395 6e1410fb50cad7108e74ac67ef661f3c 281 Gene3D G3DSA:3.40.50.10170 2 151 3.3E-39 T 13-10-2018 RAM_08395 6e1410fb50cad7108e74ac67ef661f3c 281 TIGRFAM TIGR00762 DegV: EDD domain protein, DegV family 5 277 1.7E-70 T 13-10-2018 IPR003797 DegV RAM_08395 6e1410fb50cad7108e74ac67ef661f3c 281 Pfam PF02645 Uncharacterised protein, DegV family COG1307 4 278 2.6E-68 T 13-10-2018 IPR003797 DegV RAM_08395 6e1410fb50cad7108e74ac67ef661f3c 281 SUPERFAMILY SSF82549 4 278 3.14E-63 T 13-10-2018 RAM_44320 c6b695b80ea6e71f4c29ede2eb129a4b 457 Pfam PF00512 His Kinase A (phospho-acceptor) domain 238 299 4.9E-15 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_44320 c6b695b80ea6e71f4c29ede2eb129a4b 457 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 343 449 7.4E-19 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_44320 c6b695b80ea6e71f4c29ede2eb129a4b 457 SMART SM00388 238 301 9.4E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_44320 c6b695b80ea6e71f4c29ede2eb129a4b 457 PRINTS PR00344 Bacterial sensor protein C-terminal signature 412 430 4.5E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_44320 c6b695b80ea6e71f4c29ede2eb129a4b 457 PRINTS PR00344 Bacterial sensor protein C-terminal signature 436 449 4.5E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_44320 c6b695b80ea6e71f4c29ede2eb129a4b 457 PRINTS PR00344 Bacterial sensor protein C-terminal signature 377 391 4.5E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_44320 c6b695b80ea6e71f4c29ede2eb129a4b 457 PRINTS PR00344 Bacterial sensor protein C-terminal signature 395 405 4.5E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_44320 c6b695b80ea6e71f4c29ede2eb129a4b 457 Pfam PF00672 HAMP domain 185 232 3.5E-9 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_44320 c6b695b80ea6e71f4c29ede2eb129a4b 457 SMART SM00387 342 452 6.1E-31 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_44320 c6b695b80ea6e71f4c29ede2eb129a4b 457 Gene3D G3DSA:3.30.565.10 306 451 5.1E-34 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_44320 c6b695b80ea6e71f4c29ede2eb129a4b 457 Gene3D G3DSA:1.10.287.130 188 302 8.0E-30 T 13-10-2018 RAM_44320 c6b695b80ea6e71f4c29ede2eb129a4b 457 SUPERFAMILY SSF47384 221 299 5.1E-16 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RAM_44320 c6b695b80ea6e71f4c29ede2eb129a4b 457 SMART SM00304 184 237 1.3E-9 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_44320 c6b695b80ea6e71f4c29ede2eb129a4b 457 SUPERFAMILY SSF158472 186 233 3.27E-7 T 13-10-2018 RAM_44320 c6b695b80ea6e71f4c29ede2eb129a4b 457 SUPERFAMILY SSF55874 290 451 1.7E-35 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_09820 c9ab4e2b927c649b0a4a47565191355f 283 SUPERFAMILY SSF51735 2 270 1.09E-31 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_09820 c9ab4e2b927c649b0a4a47565191355f 283 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 7.3E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_09820 c9ab4e2b927c649b0a4a47565191355f 283 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 7.3E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_09820 c9ab4e2b927c649b0a4a47565191355f 283 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 225 7.3E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_09820 c9ab4e2b927c649b0a4a47565191355f 283 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 120 136 7.3E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_09820 c9ab4e2b927c649b0a4a47565191355f 283 Gene3D G3DSA:3.40.50.720 2 276 1.4E-37 T 13-10-2018 RAM_09820 c9ab4e2b927c649b0a4a47565191355f 283 Pfam PF00106 short chain dehydrogenase 4 136 5.0E-6 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_30585 d0e3f89a244c0c8d7d45a50fc0691564 362 Pfam PF07728 AAA domain (dynein-related subfamily) 81 219 3.9E-37 T 13-10-2018 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 RAM_30585 d0e3f89a244c0c8d7d45a50fc0691564 362 Gene3D G3DSA:3.40.50.300 61 237 5.0E-23 T 13-10-2018 RAM_30585 d0e3f89a244c0c8d7d45a50fc0691564 362 SUPERFAMILY SSF52540 59 339 1.05E-20 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_13290 f40563d2f06776c6ed310ecbf06390f6 187 Pfam PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain 11 124 8.2E-13 T 13-10-2018 IPR024344 Mycothiol-dependent maleylpyruvate isomerase, metal-binding domain GO:0046872 RAM_13290 f40563d2f06776c6ed310ecbf06390f6 187 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 10 182 6.7E-24 T 13-10-2018 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type RAM_13290 f40563d2f06776c6ed310ecbf06390f6 187 SUPERFAMILY SSF109854 4 130 7.32E-21 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_13290 f40563d2f06776c6ed310ecbf06390f6 187 Gene3D G3DSA:1.20.120.450 2 71 3.6E-8 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_13290 f40563d2f06776c6ed310ecbf06390f6 187 TIGRFAM TIGR03086 TIGR03086: TIGR03086 family protein 10 182 2.5E-42 T 13-10-2018 IPR017520 Conserved hypothetical protein CHP03086 RAM_11190 eeb9a8d98babc73cd4cf52e048bdfdd7 344 Gene3D G3DSA:3.40.1030.10 79 344 1.0E-99 T 13-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 RAM_11190 eeb9a8d98babc73cd4cf52e048bdfdd7 344 Pfam PF02885 Glycosyl transferase family, helical bundle domain 11 72 1.2E-20 T 13-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 RAM_11190 eeb9a8d98babc73cd4cf52e048bdfdd7 344 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 11 343 35.577 T 13-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 RAM_11190 eeb9a8d98babc73cd4cf52e048bdfdd7 344 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 13 342 5.8E-115 T 13-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 RAM_11190 eeb9a8d98babc73cd4cf52e048bdfdd7 344 SUPERFAMILY SSF47648 9 75 3.14E-19 T 13-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 RAM_11190 eeb9a8d98babc73cd4cf52e048bdfdd7 344 SUPERFAMILY SSF52418 80 343 1.1E-82 T 13-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 RAM_11190 eeb9a8d98babc73cd4cf52e048bdfdd7 344 Pfam PF00591 Glycosyl transferase family, a/b domain 80 333 6.4E-86 T 13-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 RAM_11190 eeb9a8d98babc73cd4cf52e048bdfdd7 344 Gene3D G3DSA:1.20.970.10 7 72 1.1E-29 T 13-10-2018 RAM_44630 70b8ae90867422d71058937b948e5ee8 281 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_44630 70b8ae90867422d71058937b948e5ee8 281 SMART SM00382 36 223 3.4E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_44630 70b8ae90867422d71058937b948e5ee8 281 SUPERFAMILY SSF52540 10 235 1.28E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_44630 70b8ae90867422d71058937b948e5ee8 281 Pfam PF00005 ABC transporter 30 173 9.5E-25 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_44630 70b8ae90867422d71058937b948e5ee8 281 Gene3D G3DSA:3.40.50.300 4 257 3.1E-54 T 13-10-2018 RAM_31775 534db2b4fd20c820a2b0d0eba1884c43 291 SUPERFAMILY SSF56529 56 278 9.81E-29 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 RAM_31775 534db2b4fd20c820a2b0d0eba1884c43 291 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 102 278 2.9E-16 T 13-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 RAM_31775 534db2b4fd20c820a2b0d0eba1884c43 291 Gene3D G3DSA:3.90.850.10 67 280 2.1E-61 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 RAM_34625 59573d7ebbfa2c440b68deaa4f9fbc39 350 Gene3D G3DSA:3.90.650.10 155 330 3.1E-26 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily RAM_34625 59573d7ebbfa2c440b68deaa4f9fbc39 350 Pfam PF02769 AIR synthase related protein, C-terminal domain 160 312 1.1E-12 T 13-10-2018 IPR010918 PurM-like, C-terminal domain RAM_34625 59573d7ebbfa2c440b68deaa4f9fbc39 350 SUPERFAMILY SSF55326 8 147 1.38E-22 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily RAM_34625 59573d7ebbfa2c440b68deaa4f9fbc39 350 Hamap MF_02128 Thiamine-monophosphate kinase [thiL]. 12 319 18.516 T 13-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 RAM_34625 59573d7ebbfa2c440b68deaa4f9fbc39 350 Gene3D G3DSA:3.30.1330.10 6 148 2.7E-27 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily RAM_34625 59573d7ebbfa2c440b68deaa4f9fbc39 350 SUPERFAMILY SSF56042 153 312 1.05E-20 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily RAM_34625 59573d7ebbfa2c440b68deaa4f9fbc39 350 Pfam PF00586 AIR synthase related protein, N-terminal domain 34 146 5.2E-17 T 13-10-2018 IPR016188 PurM-like, N-terminal domain RAM_34625 59573d7ebbfa2c440b68deaa4f9fbc39 350 PIRSF PIRSF005303 7 327 6.3E-54 T 13-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 RAM_09435 72cf506e2cfeae87df0535655a20ceab 393 ProSitePatterns PS00737 Thiolases signature 2. 339 355 - T 13-10-2018 IPR020613 Thiolase, conserved site GO:0016747 RAM_09435 72cf506e2cfeae87df0535655a20ceab 393 Pfam PF00108 Thiolase, N-terminal domain 4 260 4.1E-69 T 13-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 RAM_09435 72cf506e2cfeae87df0535655a20ceab 393 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 391 8.8E-134 T 13-10-2018 IPR002155 Thiolase GO:0016747 RAM_09435 72cf506e2cfeae87df0535655a20ceab 393 Gene3D G3DSA:3.40.47.10 6 275 4.0E-142 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_09435 72cf506e2cfeae87df0535655a20ceab 393 SUPERFAMILY SSF53901 3 267 2.54E-76 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_09435 72cf506e2cfeae87df0535655a20ceab 393 ProSitePatterns PS00099 Thiolases active site. 374 387 - T 13-10-2018 IPR020610 Thiolase, active site GO:0016747 RAM_09435 72cf506e2cfeae87df0535655a20ceab 393 PIRSF PIRSF000429 1 392 1.0E-125 T 13-10-2018 IPR002155 Thiolase GO:0016747 RAM_09435 72cf506e2cfeae87df0535655a20ceab 393 SUPERFAMILY SSF53901 271 391 3.2E-39 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_09435 72cf506e2cfeae87df0535655a20ceab 393 Gene3D G3DSA:3.40.47.10 141 390 4.0E-142 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_09435 72cf506e2cfeae87df0535655a20ceab 393 Pfam PF02803 Thiolase, C-terminal domain 271 391 3.9E-40 T 13-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 RAM_26690 5165a5a5e5c5d08f425410e8faa3dec9 409 SMART SM00507 313 365 1.6E-11 T 13-10-2018 IPR003615 HNH nuclease RAM_26690 5165a5a5e5c5d08f425410e8faa3dec9 409 Pfam PF01844 HNH endonuclease 330 369 5.7E-6 T 13-10-2018 IPR002711 HNH endonuclease GO:0003676|GO:0004519 RAM_26690 5165a5a5e5c5d08f425410e8faa3dec9 409 Pfam PF02720 Domain of unknown function (DUF222) 20 322 6.7E-38 T 13-10-2018 IPR003870 Domain of unknown function DUF222 RAM_01310 a7088b50c09d2acf22756c36a1d0a7cb 343 SUPERFAMILY SSF53850 31 269 1.09E-31 T 13-10-2018 RAM_01310 a7088b50c09d2acf22756c36a1d0a7cb 343 Pfam PF09084 NMT1/THI5 like 48 259 1.4E-16 T 13-10-2018 IPR015168 SsuA/THI5-like RAM_01310 a7088b50c09d2acf22756c36a1d0a7cb 343 Gene3D G3DSA:3.40.190.10 33 333 3.7E-90 T 13-10-2018 RAM_01310 a7088b50c09d2acf22756c36a1d0a7cb 343 Gene3D G3DSA:3.40.190.10 112 223 3.7E-90 T 13-10-2018 RAM_42565 8a4934c1150f7fea380e85cdeb82d163 342 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 4 337 35.636 T 13-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RAM_42565 8a4934c1150f7fea380e85cdeb82d163 342 PIRSF PIRSF039102 1 342 3.4E-107 T 13-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RAM_42565 8a4934c1150f7fea380e85cdeb82d163 342 Pfam PF07478 D-ala D-ala ligase C-terminus 159 333 1.1E-59 T 13-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RAM_42565 8a4934c1150f7fea380e85cdeb82d163 342 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 97 108 - T 13-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RAM_42565 8a4934c1150f7fea380e85cdeb82d163 342 Gene3D G3DSA:3.30.470.20 125 333 9.9E-72 T 13-10-2018 RAM_42565 8a4934c1150f7fea380e85cdeb82d163 342 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 5 336 3.6E-83 T 13-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RAM_42565 8a4934c1150f7fea380e85cdeb82d163 342 Gene3D G3DSA:3.40.50.20 1 119 2.0E-39 T 13-10-2018 RAM_42565 8a4934c1150f7fea380e85cdeb82d163 342 Gene3D G3DSA:3.30.1490.20 145 202 9.9E-72 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 RAM_42565 8a4934c1150f7fea380e85cdeb82d163 342 SUPERFAMILY SSF52440 3 129 2.01E-34 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RAM_42565 8a4934c1150f7fea380e85cdeb82d163 342 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 279 307 - T 13-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RAM_42565 8a4934c1150f7fea380e85cdeb82d163 342 SUPERFAMILY SSF56059 130 333 1.3E-52 T 13-10-2018 RAM_42565 8a4934c1150f7fea380e85cdeb82d163 342 Pfam PF01820 D-ala D-ala ligase N-terminus 5 120 1.3E-26 T 13-10-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RAM_19945 1cea90fa79f5810302abc665b24cf376 273 SUPERFAMILY SSF161098 34 259 3.27E-60 T 13-10-2018 IPR035906 MetI-like superfamily RAM_19945 1cea90fa79f5810302abc665b24cf376 273 Gene3D G3DSA:1.10.3720.10 30 270 1.3E-69 T 13-10-2018 IPR035906 MetI-like superfamily RAM_19945 1cea90fa79f5810302abc665b24cf376 273 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 65 265 2.7E-20 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_31645 0dafa74ff2ff04ec24cc4b50a7630534 115 Gene3D G3DSA:1.10.10.10 10 114 8.3E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_31645 0dafa74ff2ff04ec24cc4b50a7630534 115 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 75 4.1E-18 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_31645 0dafa74ff2ff04ec24cc4b50a7630534 115 SUPERFAMILY SSF46785 10 79 6.42E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_31645 0dafa74ff2ff04ec24cc4b50a7630534 115 SMART SM00345 16 75 5.0E-16 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_22905 8ffca17ce2a8fb48a1eae26c2e0d4c1f 92 SUPERFAMILY SSF55594 2 91 1.83E-19 T 13-10-2018 IPR035895 HPr-like superfamily RAM_22905 8ffca17ce2a8fb48a1eae26c2e0d4c1f 92 Pfam PF00381 PTS HPr component phosphorylation site 3 87 3.5E-22 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like RAM_22905 8ffca17ce2a8fb48a1eae26c2e0d4c1f 92 Gene3D G3DSA:3.30.1340.10 2 91 8.7E-22 T 13-10-2018 IPR035895 HPr-like superfamily RAM_22905 8ffca17ce2a8fb48a1eae26c2e0d4c1f 92 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 3 87 4.8E-21 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like RAM_22905 8ffca17ce2a8fb48a1eae26c2e0d4c1f 92 PRINTS PR00107 Phosphocarrier protein signature 13 29 1.2E-11 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like RAM_22905 8ffca17ce2a8fb48a1eae26c2e0d4c1f 92 PRINTS PR00107 Phosphocarrier protein signature 58 75 1.2E-11 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like RAM_22905 8ffca17ce2a8fb48a1eae26c2e0d4c1f 92 PRINTS PR00107 Phosphocarrier protein signature 43 58 1.2E-11 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like RAM_35645 f7676f06d209f94568f36a633d75da92 243 Pfam PF00440 Bacterial regulatory proteins, tetR family 28 74 8.8E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_35645 f7676f06d209f94568f36a633d75da92 243 SUPERFAMILY SSF48498 90 234 5.89E-13 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_35645 f7676f06d209f94568f36a633d75da92 243 Gene3D G3DSA:1.10.10.60 7 82 5.1E-15 T 13-10-2018 RAM_35645 f7676f06d209f94568f36a633d75da92 243 Pfam PF02909 Tetracyclin repressor, C-terminal all-alpha domain 85 150 1.4E-4 T 13-10-2018 IPR004111 Tetracycline transcriptional regulator, TetR, C-terminal GO:0045892 RAM_35645 f7676f06d209f94568f36a633d75da92 243 Gene3D G3DSA:1.10.357.10 84 240 1.3E-16 T 13-10-2018 RAM_35645 f7676f06d209f94568f36a633d75da92 243 SUPERFAMILY SSF46689 23 81 1.64E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_36040 8f2124b087875f7624631e237eed84f1 379 SUPERFAMILY SSF55874 259 376 3.16E-12 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_36040 8f2124b087875f7624631e237eed84f1 379 Gene3D G3DSA:3.30.565.10 252 377 1.2E-20 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_36040 8f2124b087875f7624631e237eed84f1 379 Pfam PF07730 Histidine kinase 184 246 1.1E-5 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_36040 8f2124b087875f7624631e237eed84f1 379 Gene3D G3DSA:3.30.450.40 7 181 7.9E-24 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_36040 8f2124b087875f7624631e237eed84f1 379 Pfam PF13185 GAF domain 38 168 7.8E-13 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_36040 8f2124b087875f7624631e237eed84f1 379 SUPERFAMILY SSF55781 33 176 3.49E-19 T 13-10-2018 RAM_36040 8f2124b087875f7624631e237eed84f1 379 SMART SM00387 287 378 1.1E-4 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_36040 8f2124b087875f7624631e237eed84f1 379 SMART SM00065 29 177 8.6E-11 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_06910 2112a50ef94222b87296d3a86d93edeb 186 Gene3D G3DSA:1.10.10.10 115 176 4.3E-8 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_06910 2112a50ef94222b87296d3a86d93edeb 186 Gene3D G3DSA:1.10.1740.10 1 104 5.3E-20 T 13-10-2018 RAM_06910 2112a50ef94222b87296d3a86d93edeb 186 SUPERFAMILY SSF88946 3 101 1.05E-22 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_06910 2112a50ef94222b87296d3a86d93edeb 186 Pfam PF04542 Sigma-70 region 2 21 88 1.6E-13 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_06910 2112a50ef94222b87296d3a86d93edeb 186 SUPERFAMILY SSF88659 105 176 1.61E-7 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_06910 2112a50ef94222b87296d3a86d93edeb 186 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 17 173 4.1E-21 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_14565 6f768ed69b6aef050a517ccbaca927fd 143 SMART SM00347 29 129 5.9E-13 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_14565 6f768ed69b6aef050a517ccbaca927fd 143 Pfam PF12802 MarR family 34 92 1.3E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_14565 6f768ed69b6aef050a517ccbaca927fd 143 Gene3D G3DSA:1.10.10.10 3 142 1.6E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_14565 6f768ed69b6aef050a517ccbaca927fd 143 SUPERFAMILY SSF46785 7 141 4.12E-28 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_14565 6f768ed69b6aef050a517ccbaca927fd 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 53 69 1.7E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_14565 6f768ed69b6aef050a517ccbaca927fd 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 89 105 1.7E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_14565 6f768ed69b6aef050a517ccbaca927fd 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 119 139 1.7E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_14565 6f768ed69b6aef050a517ccbaca927fd 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 70 85 1.7E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_41435 f6fdfac55f72bd5e14e78058cf70202d 510 SUPERFAMILY SSF50249 378 502 1.88E-30 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_41435 f6fdfac55f72bd5e14e78058cf70202d 510 Gene3D G3DSA:2.40.50.140 377 507 1.3E-30 T 13-10-2018 RAM_41435 f6fdfac55f72bd5e14e78058cf70202d 510 ProSitePatterns PS00697 ATP-dependent DNA ligase AMP-binding site. 210 218 - T 13-10-2018 IPR016059 DNA ligase, ATP-dependent, conserved site GO:0003909|GO:0051103 RAM_41435 f6fdfac55f72bd5e14e78058cf70202d 510 Gene3D G3DSA:1.10.3260.10 1 184 3.2E-40 T 13-10-2018 IPR036599 DNA ligase, ATP-dependent, N-terminal domain superfamily GO:0003677|GO:0003910|GO:0006281|GO:0006310 RAM_41435 f6fdfac55f72bd5e14e78058cf70202d 510 SUPERFAMILY SSF56091 182 376 5.76E-43 T 13-10-2018 RAM_41435 f6fdfac55f72bd5e14e78058cf70202d 510 Gene3D G3DSA:3.30.470.30 185 376 3.6E-50 T 13-10-2018 RAM_41435 f6fdfac55f72bd5e14e78058cf70202d 510 SUPERFAMILY SSF117018 4 203 2.22E-22 T 13-10-2018 IPR036599 DNA ligase, ATP-dependent, N-terminal domain superfamily GO:0003677|GO:0003910|GO:0006281|GO:0006310 RAM_41435 f6fdfac55f72bd5e14e78058cf70202d 510 Pfam PF04675 DNA ligase N terminus 74 140 1.2E-8 T 13-10-2018 IPR012308 DNA ligase, ATP-dependent, N-terminal GO:0003677|GO:0003910|GO:0006281|GO:0006310 RAM_41435 f6fdfac55f72bd5e14e78058cf70202d 510 Pfam PF01068 ATP dependent DNA ligase domain 188 376 2.9E-40 T 13-10-2018 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 RAM_41435 f6fdfac55f72bd5e14e78058cf70202d 510 Pfam PF04679 ATP dependent DNA ligase C terminal region 395 487 3.4E-11 T 13-10-2018 IPR012309 DNA ligase, ATP-dependent, C-terminal GO:0003910|GO:0006281|GO:0006310 RAM_41435 f6fdfac55f72bd5e14e78058cf70202d 510 TIGRFAM TIGR00574 dnl1: DNA ligase I, ATP-dependent (dnl1) 90 500 1.9E-75 T 13-10-2018 IPR000977 DNA ligase, ATP-dependent GO:0003910|GO:0005524|GO:0006281|GO:0006310|GO:0071897 RAM_24330 2a6fa9f9cd1561bf13fd415f260b5f9e 157 Gene3D G3DSA:3.10.450.50 2 147 1.0E-32 T 13-10-2018 RAM_24330 2a6fa9f9cd1561bf13fd415f260b5f9e 157 Pfam PF13577 SnoaL-like domain 6 135 4.7E-20 T 13-10-2018 IPR037401 SnoaL-like domain RAM_24330 2a6fa9f9cd1561bf13fd415f260b5f9e 157 SUPERFAMILY SSF54427 4 140 4.59E-26 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_10945 158f6fb1252239135d27b498d4e86418 541 SMART SM00939 302 535 1.6E-56 T 13-10-2018 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 RAM_10945 158f6fb1252239135d27b498d4e86418 541 Gene3D G3DSA:1.10.3020.10 156 240 5.6E-73 T 13-10-2018 RAM_10945 158f6fb1252239135d27b498d4e86418 541 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 32 289 4.8E-46 T 13-10-2018 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 RAM_10945 158f6fb1252239135d27b498d4e86418 541 SUPERFAMILY SSF53474 21 337 1.68E-39 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_10945 158f6fb1252239135d27b498d4e86418 541 TIGRFAM TIGR00976 /NonD: hydrolase CocE/NonD family protein 28 539 6.7E-90 T 13-10-2018 IPR005674 CocE/Serine esterase GO:0016787 RAM_10945 158f6fb1252239135d27b498d4e86418 541 Pfam PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain 319 534 1.0E-30 T 13-10-2018 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 RAM_10945 158f6fb1252239135d27b498d4e86418 541 Gene3D G3DSA:3.40.50.1820 27 331 5.6E-73 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_10945 158f6fb1252239135d27b498d4e86418 541 Gene3D G3DSA:2.60.120.260 333 539 3.8E-54 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_10945 158f6fb1252239135d27b498d4e86418 541 SUPERFAMILY SSF49785 331 538 3.19E-44 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_46735 c37c89b453144cebf5215bc27c64f69d 303 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 89 100 4.2E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_46735 c37c89b453144cebf5215bc27c64f69d 303 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 180 4.2E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_46735 c37c89b453144cebf5215bc27c64f69d 303 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 4.2E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_46735 c37c89b453144cebf5215bc27c64f69d 303 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 17 191 2.5E-4 T 13-10-2018 RAM_46735 c37c89b453144cebf5215bc27c64f69d 303 Gene3D G3DSA:3.40.50.720 8 276 4.5E-58 T 13-10-2018 RAM_46735 c37c89b453144cebf5215bc27c64f69d 303 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 148 176 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_46735 c37c89b453144cebf5215bc27c64f69d 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 3.0E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_46735 c37c89b453144cebf5215bc27c64f69d 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 89 100 3.0E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_46735 c37c89b453144cebf5215bc27c64f69d 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 3.0E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_46735 c37c89b453144cebf5215bc27c64f69d 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 3.0E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_46735 c37c89b453144cebf5215bc27c64f69d 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 18 35 3.0E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_46735 c37c89b453144cebf5215bc27c64f69d 303 SUPERFAMILY SSF51735 13 263 7.17E-59 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_46735 c37c89b453144cebf5215bc27c64f69d 303 Pfam PF00106 short chain dehydrogenase 17 203 8.3E-45 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_41510 c25af5b48c7fabf9e5f685f121224d09 629 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 137 244 2.5E-16 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RAM_41510 c25af5b48c7fabf9e5f685f121224d09 629 SUPERFAMILY SSF47203 486 625 4.19E-37 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_41510 c25af5b48c7fabf9e5f685f121224d09 629 Gene3D G3DSA:1.20.140.10 489 616 4.1E-24 T 13-10-2018 RAM_41510 c25af5b48c7fabf9e5f685f121224d09 629 Gene3D G3DSA:1.10.540.10 22 133 2.2E-6 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_41510 c25af5b48c7fabf9e5f685f121224d09 629 PIRSF PIRSF000168 5 628 4.7E-166 T 13-10-2018 IPR012258 Acyl-CoA oxidase GO:0003997|GO:0005777|GO:0006631|GO:0071949 KEGG: 00071+1.3.3.6|KEGG: 00592+1.3.3.6|MetaCyc: PWY-5136|MetaCyc: PWY-6837|MetaCyc: PWY-6920|MetaCyc: PWY-7007|MetaCyc: PWY-7288|MetaCyc: PWY-7291|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7574|MetaCyc: PWY-7606|MetaCyc: PWY-7726|MetaCyc: PWY-7854|MetaCyc: PWY-7858|Reactome: R-HSA-9033241 RAM_41510 c25af5b48c7fabf9e5f685f121224d09 629 Gene3D G3DSA:2.40.110.10 136 271 1.2E-48 T 13-10-2018 RAM_41510 c25af5b48c7fabf9e5f685f121224d09 629 Gene3D G3DSA:1.20.140.10 278 444 3.9E-52 T 13-10-2018 RAM_41510 c25af5b48c7fabf9e5f685f121224d09 629 Pfam PF01756 Acyl-CoA oxidase 493 625 4.1E-22 T 13-10-2018 IPR002655 Acyl-CoA oxidase, C-terminal GO:0003997|GO:0005777|GO:0006635 KEGG: 00071+1.3.3.6|KEGG: 00592+1.3.3.6|MetaCyc: PWY-5136|MetaCyc: PWY-6837|MetaCyc: PWY-6920|MetaCyc: PWY-7007|MetaCyc: PWY-7288|MetaCyc: PWY-7291|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7574|MetaCyc: PWY-7606|MetaCyc: PWY-7726|MetaCyc: PWY-7854|MetaCyc: PWY-7858 RAM_41510 c25af5b48c7fabf9e5f685f121224d09 629 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 53 131 1.0E-5 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_41510 c25af5b48c7fabf9e5f685f121224d09 629 SUPERFAMILY SSF47203 274 455 4.34E-47 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_41510 c25af5b48c7fabf9e5f685f121224d09 629 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 278 435 3.9E-12 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_41510 c25af5b48c7fabf9e5f685f121224d09 629 SUPERFAMILY SSF56645 15 260 1.83E-54 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_06330 232c7591f94b7d17ef3ebdbbfa56aced 472 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 312 330 3.6E-45 T 13-10-2018 RAM_06330 232c7591f94b7d17ef3ebdbbfa56aced 472 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 279 294 3.6E-45 T 13-10-2018 RAM_06330 232c7591f94b7d17ef3ebdbbfa56aced 472 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 294 310 3.6E-45 T 13-10-2018 RAM_06330 232c7591f94b7d17ef3ebdbbfa56aced 472 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 7 29 3.6E-45 T 13-10-2018 RAM_06330 232c7591f94b7d17ef3ebdbbfa56aced 472 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 330 346 3.6E-45 T 13-10-2018 RAM_06330 232c7591f94b7d17ef3ebdbbfa56aced 472 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 145 160 3.6E-45 T 13-10-2018 RAM_06330 232c7591f94b7d17ef3ebdbbfa56aced 472 SUPERFAMILY SSF51905 7 354 8.26E-61 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_06330 232c7591f94b7d17ef3ebdbbfa56aced 472 Gene3D G3DSA:3.50.50.60 8 342 2.7E-105 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_06330 232c7591f94b7d17ef3ebdbbfa56aced 472 Gene3D G3DSA:3.40.30.120 391 472 2.5E-10 T 13-10-2018 RAM_06330 232c7591f94b7d17ef3ebdbbfa56aced 472 Gene3D G3DSA:3.30.70.2450 174 268 2.7E-105 T 13-10-2018 RAM_06330 232c7591f94b7d17ef3ebdbbfa56aced 472 Pfam PF01494 FAD binding domain 6 343 1.7E-83 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_12830 2454701e89f30630b64006f1f6b9f5fe 303 Gene3D G3DSA:3.10.180.10 1 129 1.3E-35 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_12830 2454701e89f30630b64006f1f6b9f5fe 303 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 142 267 2.5E-22 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RAM_12830 2454701e89f30630b64006f1f6b9f5fe 303 ProSitePatterns PS00082 Extradiol ring-cleavage dioxygenases signature. 245 266 - T 13-10-2018 IPR000486 Extradiol ring-cleavage dioxygenase, class I /II GO:0003824|GO:0006725|GO:0008198|GO:0055114 RAM_12830 2454701e89f30630b64006f1f6b9f5fe 303 SUPERFAMILY SSF54593 1 123 1.59E-20 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_12830 2454701e89f30630b64006f1f6b9f5fe 303 Gene3D G3DSA:3.10.180.10 134 300 6.5E-58 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_12830 2454701e89f30630b64006f1f6b9f5fe 303 SUPERFAMILY SSF54593 135 292 2.15E-35 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_10910 c9bcc0905f20c9e275261d44b87c781e 154 SUPERFAMILY SSF46785 6 139 1.44E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_10910 c9bcc0905f20c9e275261d44b87c781e 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 88 104 6.5E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_10910 c9bcc0905f20c9e275261d44b87c781e 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 52 68 6.5E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_10910 c9bcc0905f20c9e275261d44b87c781e 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 69 84 6.5E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_10910 c9bcc0905f20c9e275261d44b87c781e 154 SMART SM00347 29 128 3.1E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_10910 c9bcc0905f20c9e275261d44b87c781e 154 Pfam PF12802 MarR family 28 92 3.4E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_10910 c9bcc0905f20c9e275261d44b87c781e 154 Gene3D G3DSA:1.10.10.10 5 140 3.4E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_21020 95bec77a3d9227a6982bbe7919de9bb5 678 Gene3D G3DSA:2.60.120.260 548 676 3.5E-23 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_21020 95bec77a3d9227a6982bbe7919de9bb5 678 Gene3D G3DSA:2.60.420.10 433 499 4.4E-8 T 13-10-2018 RAM_21020 95bec77a3d9227a6982bbe7919de9bb5 678 Pfam PF17389 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain 132 317 1.1E-6 T 13-10-2018 IPR035396 Alpha-L-rhamnosidase, six-hairpin glycosidase domain RAM_21020 95bec77a3d9227a6982bbe7919de9bb5 678 Gene3D G3DSA:1.50.10.10 92 425 1.7E-26 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 RAM_21020 95bec77a3d9227a6982bbe7919de9bb5 678 SUPERFAMILY SSF49785 548 675 5.1E-16 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_21020 95bec77a3d9227a6982bbe7919de9bb5 678 SUPERFAMILY SSF48208 59 502 8.11E-46 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_12250 acfe6303b7cba1166bb0f2a4881615bd 223 Pfam PF02698 DUF218 domain 36 141 3.4E-18 T 13-10-2018 IPR003848 Domain of unknown function DUF218 RAM_12250 acfe6303b7cba1166bb0f2a4881615bd 223 Gene3D G3DSA:3.40.50.620 23 150 1.0E-14 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAM_07240 712651b83ddf95b6081068a1d857e599 287 Gene3D G3DSA:3.30.450.180 106 263 5.1E-13 T 13-10-2018 RAM_07240 712651b83ddf95b6081068a1d857e599 287 Gene3D G3DSA:1.10.260.40 7 86 2.1E-8 T 13-10-2018 RAM_07240 712651b83ddf95b6081068a1d857e599 287 SUPERFAMILY SSF47413 32 83 1.99E-8 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_07240 712651b83ddf95b6081068a1d857e599 287 SMART SM00530 12 84 2.3E-7 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_07240 712651b83ddf95b6081068a1d857e599 287 Pfam PF13560 Helix-turn-helix domain 8 87 3.7E-16 T 13-10-2018 RAM_40735 546fbeebd8ecfb02279a10b31d4c57fd 187 Gene3D G3DSA:1.10.357.10 50 187 5.5E-36 T 13-10-2018 RAM_40735 546fbeebd8ecfb02279a10b31d4c57fd 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 1.1E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_40735 546fbeebd8ecfb02279a10b31d4c57fd 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 1.1E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_40735 546fbeebd8ecfb02279a10b31d4c57fd 187 Gene3D G3DSA:1.10.10.60 6 48 7.7E-23 T 13-10-2018 RAM_40735 546fbeebd8ecfb02279a10b31d4c57fd 187 SUPERFAMILY SSF48498 82 185 1.04E-9 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_40735 546fbeebd8ecfb02279a10b31d4c57fd 187 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 58 5.7E-18 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_40735 546fbeebd8ecfb02279a10b31d4c57fd 187 SUPERFAMILY SSF46689 5 68 9.45E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_41345 4da93ff6f7b15f8cd18a935cdd52989a 196 Gene3D G3DSA:3.30.460.10 97 174 4.6E-5 T 13-10-2018 RAM_41345 4da93ff6f7b15f8cd18a935cdd52989a 196 Gene3D G3DSA:1.10.10.10 14 89 3.9E-7 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_41345 4da93ff6f7b15f8cd18a935cdd52989a 196 SUPERFAMILY SSF46785 22 80 1.42E-9 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_23265 7ebb47808c950333b549aede109f521b 294 Gene3D G3DSA:3.40.50.261 130 293 3.6E-60 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RAM_23265 7ebb47808c950333b549aede109f521b 294 SMART SM00881 4 104 2.9E-25 T 13-10-2018 IPR003781 CoA-binding GO:0048037 RAM_23265 7ebb47808c950333b549aede109f521b 294 Pfam PF02629 CoA binding domain 6 103 1.6E-23 T 13-10-2018 IPR003781 CoA-binding GO:0048037 RAM_23265 7ebb47808c950333b549aede109f521b 294 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 3 292 7.0E-124 T 13-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RAM_23265 7ebb47808c950333b549aede109f521b 294 Hamap MF_01988 Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 1 292 38.756 T 13-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RAM_23265 7ebb47808c950333b549aede109f521b 294 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 158 185 - T 13-10-2018 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site RAM_23265 7ebb47808c950333b549aede109f521b 294 Gene3D G3DSA:3.40.50.720 1 129 4.0E-43 T 13-10-2018 RAM_23265 7ebb47808c950333b549aede109f521b 294 SUPERFAMILY SSF52210 129 290 7.72E-47 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RAM_23265 7ebb47808c950333b549aede109f521b 294 PRINTS PR01798 Succinyl-CoA synthase signature 181 199 2.7E-33 T 13-10-2018 RAM_23265 7ebb47808c950333b549aede109f521b 294 PRINTS PR01798 Succinyl-CoA synthase signature 244 261 2.7E-33 T 13-10-2018 RAM_23265 7ebb47808c950333b549aede109f521b 294 PRINTS PR01798 Succinyl-CoA synthase signature 86 103 2.7E-33 T 13-10-2018 RAM_23265 7ebb47808c950333b549aede109f521b 294 PRINTS PR01798 Succinyl-CoA synthase signature 212 225 2.7E-33 T 13-10-2018 RAM_23265 7ebb47808c950333b549aede109f521b 294 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 240 253 - T 13-10-2018 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site RAM_23265 7ebb47808c950333b549aede109f521b 294 Pfam PF00549 CoA-ligase 158 274 7.1E-15 T 13-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RAM_23265 7ebb47808c950333b549aede109f521b 294 SUPERFAMILY SSF51735 3 128 2.78E-33 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_23265 7ebb47808c950333b549aede109f521b 294 PIRSF PIRSF001553 1 294 1.7E-112 T 13-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RAM_19380 9192e38918f1e730de94693c281314d0 638 SUPERFAMILY SSF46894 3 95 2.83E-10 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_19380 9192e38918f1e730de94693c281314d0 638 SUPERFAMILY SSF48452 110 262 7.97E-30 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_19380 9192e38918f1e730de94693c281314d0 638 SMART SM00862 16 95 5.5E-9 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_19380 9192e38918f1e730de94693c281314d0 638 Pfam PF00486 Transcriptional regulatory protein, C terminal 18 95 1.0E-8 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_19380 9192e38918f1e730de94693c281314d0 638 Pfam PF03704 Bacterial transcriptional activator domain 102 241 1.2E-35 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_19380 9192e38918f1e730de94693c281314d0 638 Gene3D G3DSA:1.10.10.10 1 98 1.8E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_19380 9192e38918f1e730de94693c281314d0 638 Gene3D G3DSA:1.25.40.10 100 255 7.8E-45 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_19380 9192e38918f1e730de94693c281314d0 638 SMART SM01043 102 241 1.0E-44 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_13520 b26754a9d4705b683e03fa382a4dc5f0 517 Gene3D G3DSA:1.10.10.2840 389 517 8.3E-19 T 13-10-2018 RAM_13520 b26754a9d4705b683e03fa382a4dc5f0 517 Pfam PF13556 PucR C-terminal helix-turn-helix domain 460 517 2.7E-17 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain RAM_44945 5a247f630e16d17f04712df4cd6ec984 141 Gene3D G3DSA:1.10.10.2720 74 141 1.6E-25 T 13-10-2018 RAM_44945 5a247f630e16d17f04712df4cd6ec984 141 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 7 141 23.337 T 13-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 RAM_44945 5a247f630e16d17f04712df4cd6ec984 141 Pfam PF00298 Ribosomal protein L11, RNA binding domain 72 139 5.5E-22 T 13-10-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 RAM_44945 5a247f630e16d17f04712df4cd6ec984 141 SUPERFAMILY SSF46906 70 139 6.67E-22 T 13-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily RAM_44945 5a247f630e16d17f04712df4cd6ec984 141 Pfam PF03946 Ribosomal protein L11, N-terminal domain 11 67 1.2E-12 T 13-10-2018 IPR020784 Ribosomal protein L11, N-terminal RAM_44945 5a247f630e16d17f04712df4cd6ec984 141 SMART SM00649 11 140 2.4E-50 T 13-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 RAM_44945 5a247f630e16d17f04712df4cd6ec984 141 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 38 74 9.0E-9 T 13-10-2018 RAM_44945 5a247f630e16d17f04712df4cd6ec984 141 Gene3D G3DSA:3.30.1550.10 4 73 2.9E-15 T 13-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily RAM_44945 5a247f630e16d17f04712df4cd6ec984 141 SUPERFAMILY SSF54747 4 85 1.06E-14 T 13-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily RAM_18100 256a26e3947adb795d83287028302801 267 SUPERFAMILY SSF51735 17 260 8.2E-78 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_18100 256a26e3947adb795d83287028302801 267 Gene3D G3DSA:3.40.50.720 10 261 2.4E-81 T 13-10-2018 RAM_18100 256a26e3947adb795d83287028302801 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 19 36 1.5E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18100 256a26e3947adb795d83287028302801 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 191 208 1.5E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18100 256a26e3947adb795d83287028302801 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 143 159 1.5E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18100 256a26e3947adb795d83287028302801 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 224 244 1.5E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18100 256a26e3947adb795d83287028302801 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 92 103 1.5E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18100 256a26e3947adb795d83287028302801 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 170 189 1.5E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18100 256a26e3947adb795d83287028302801 267 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 157 185 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_18100 256a26e3947adb795d83287028302801 267 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 26 260 2.0E-57 T 13-10-2018 RAM_18100 256a26e3947adb795d83287028302801 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 92 103 5.9E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18100 256a26e3947adb795d83287028302801 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 170 189 5.9E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18100 256a26e3947adb795d83287028302801 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 157 5.9E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_02460 1495a1e52257879c55c4328554c504b4 307 Hamap MF_01131 Redox-sensing transcriptional repressor Rex [rex]. 55 263 34.391 T 13-10-2018 IPR022876 Redox-sensing transcriptional repressor Rex GO:0005737|GO:0045892|GO:0051775 RAM_02460 1495a1e52257879c55c4328554c504b4 307 SMART SM00881 133 234 1.1E-15 T 13-10-2018 IPR003781 CoA-binding GO:0048037 RAM_02460 1495a1e52257879c55c4328554c504b4 307 Gene3D G3DSA:3.40.50.720 133 266 3.1E-43 T 13-10-2018 RAM_02460 1495a1e52257879c55c4328554c504b4 307 SUPERFAMILY SSF46785 61 133 3.63E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_02460 1495a1e52257879c55c4328554c504b4 307 Pfam PF02629 CoA binding domain 136 233 5.8E-18 T 13-10-2018 IPR003781 CoA-binding GO:0048037 RAM_02460 1495a1e52257879c55c4328554c504b4 307 SUPERFAMILY SSF51735 138 258 1.18E-25 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_02460 1495a1e52257879c55c4328554c504b4 307 Gene3D G3DSA:1.10.10.10 54 132 4.5E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_02460 1495a1e52257879c55c4328554c504b4 307 Pfam PF06971 Putative DNA-binding protein N-terminus 60 107 2.9E-18 T 13-10-2018 IPR009718 Rex DNA-binding, C-terminal domain GO:0005737|GO:0045892|GO:0051775 RAM_01330 a95a3f7998ef769a7cfb6e3a3ad3aefe 367 PIRSF PIRSF001134 1 367 3.3E-91 T 13-10-2018 IPR001316 Peptidase S1A, streptogrisin GO:0004252|GO:0006508 RAM_01330 a95a3f7998ef769a7cfb6e3a3ad3aefe 367 PRINTS PR00861 Alpha-lytic endopeptidase serine protease (S2A) signature 335 349 1.4E-29 T 13-10-2018 IPR001316 Peptidase S1A, streptogrisin GO:0004252|GO:0006508 RAM_01330 a95a3f7998ef769a7cfb6e3a3ad3aefe 367 PRINTS PR00861 Alpha-lytic endopeptidase serine protease (S2A) signature 311 334 1.4E-29 T 13-10-2018 IPR001316 Peptidase S1A, streptogrisin GO:0004252|GO:0006508 RAM_01330 a95a3f7998ef769a7cfb6e3a3ad3aefe 367 PRINTS PR00861 Alpha-lytic endopeptidase serine protease (S2A) signature 271 291 1.4E-29 T 13-10-2018 IPR001316 Peptidase S1A, streptogrisin GO:0004252|GO:0006508 RAM_01330 a95a3f7998ef769a7cfb6e3a3ad3aefe 367 PRINTS PR00861 Alpha-lytic endopeptidase serine protease (S2A) signature 292 309 1.4E-29 T 13-10-2018 IPR001316 Peptidase S1A, streptogrisin GO:0004252|GO:0006508 RAM_01330 a95a3f7998ef769a7cfb6e3a3ad3aefe 367 PRINTS PR00861 Alpha-lytic endopeptidase serine protease (S2A) signature 213 227 1.4E-29 T 13-10-2018 IPR001316 Peptidase S1A, streptogrisin GO:0004252|GO:0006508 RAM_01330 a95a3f7998ef769a7cfb6e3a3ad3aefe 367 Gene3D G3DSA:3.30.300.50 30 111 1.4E-8 T 13-10-2018 IPR035070 Streptogrisin prodomain RAM_01330 a95a3f7998ef769a7cfb6e3a3ad3aefe 367 Pfam PF02983 Alpha-lytic protease prodomain 114 171 1.2E-13 T 13-10-2018 IPR004236 Peptidase S1A, alpha-lytic prodomain GO:0005576|GO:0006508|GO:0008236 RAM_01330 a95a3f7998ef769a7cfb6e3a3ad3aefe 367 Gene3D G3DSA:3.30.300.50 113 183 6.0E-6 T 13-10-2018 IPR035070 Streptogrisin prodomain RAM_01330 a95a3f7998ef769a7cfb6e3a3ad3aefe 367 SUPERFAMILY SSF50494 192 358 6.15E-27 T 13-10-2018 IPR009003 Peptidase S1, PA clan RAM_01330 a95a3f7998ef769a7cfb6e3a3ad3aefe 367 Gene3D G3DSA:2.40.10.10 263 352 1.8E-50 T 13-10-2018 RAM_01330 a95a3f7998ef769a7cfb6e3a3ad3aefe 367 Gene3D G3DSA:2.40.10.10 192 363 1.8E-50 T 13-10-2018 RAM_25875 56a1daad1a3c89ee408d591ca051da32 155 Gene3D G3DSA:1.10.10.10 21 149 7.4E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_25875 56a1daad1a3c89ee408d591ca051da32 155 Pfam PF13463 Winged helix DNA-binding domain 42 105 2.9E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_25875 56a1daad1a3c89ee408d591ca051da32 155 SUPERFAMILY SSF46785 21 144 1.57E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_25875 56a1daad1a3c89ee408d591ca051da32 155 PRINTS PR00598 Bacterial regulatory protein MarR family signature 73 88 2.3E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_25875 56a1daad1a3c89ee408d591ca051da32 155 PRINTS PR00598 Bacterial regulatory protein MarR family signature 122 142 2.3E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_25875 56a1daad1a3c89ee408d591ca051da32 155 PRINTS PR00598 Bacterial regulatory protein MarR family signature 56 72 2.3E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_25875 56a1daad1a3c89ee408d591ca051da32 155 PRINTS PR00598 Bacterial regulatory protein MarR family signature 92 108 2.3E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_25875 56a1daad1a3c89ee408d591ca051da32 155 SMART SM00347 33 132 4.5E-4 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_13285 0b5cc401b90d79bd0fcd6ec1a5ec9ddf 395 Gene3D G3DSA:2.40.50.140 2 79 2.2E-22 T 13-10-2018 RAM_13285 0b5cc401b90d79bd0fcd6ec1a5ec9ddf 395 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 322 394 4.6E-10 T 13-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 RAM_13285 0b5cc401b90d79bd0fcd6ec1a5ec9ddf 395 SUPERFAMILY SSF50249 8 67 6.28E-12 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_13285 0b5cc401b90d79bd0fcd6ec1a5ec9ddf 395 Gene3D G3DSA:3.40.50.150 200 395 7.6E-48 T 13-10-2018 RAM_13285 0b5cc401b90d79bd0fcd6ec1a5ec9ddf 395 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 379 389 - T 13-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site RAM_13285 0b5cc401b90d79bd0fcd6ec1a5ec9ddf 395 Pfam PF01938 TRAM domain 6 57 1.9E-10 T 13-10-2018 IPR002792 TRAM domain RAM_13285 0b5cc401b90d79bd0fcd6ec1a5ec9ddf 395 SUPERFAMILY SSF53335 69 394 4.14E-49 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_10485 699438389a9dca03c3a928dfcedc8ec4 297 Gene3D G3DSA:3.60.15.10 11 250 4.2E-37 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_10485 699438389a9dca03c3a928dfcedc8ec4 297 SUPERFAMILY SSF56281 12 266 1.96E-40 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_10485 699438389a9dca03c3a928dfcedc8ec4 297 SMART SM00849 32 225 3.4E-16 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_10485 699438389a9dca03c3a928dfcedc8ec4 297 Pfam PF00753 Metallo-beta-lactamase superfamily 31 225 3.1E-15 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_05310 8a84fe3d5adc25b2997d6196bc1e03e4 461 Pfam PF00534 Glycosyl transferases group 1 278 432 2.6E-19 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 RAM_05310 8a84fe3d5adc25b2997d6196bc1e03e4 461 Gene3D G3DSA:3.40.50.2000 265 432 1.5E-30 T 13-10-2018 RAM_05310 8a84fe3d5adc25b2997d6196bc1e03e4 461 Gene3D G3DSA:3.40.50.2000 111 264 1.5E-30 T 13-10-2018 RAM_05310 8a84fe3d5adc25b2997d6196bc1e03e4 461 SUPERFAMILY SSF53756 101 436 7.07E-39 T 13-10-2018 RAM_05630 31a082c840522b619d5da3af563b2945 598 Pfam PF00271 Helicase conserved C-terminal domain 301 410 3.0E-30 T 13-10-2018 IPR001650 Helicase, C-terminal RAM_05630 31a082c840522b619d5da3af563b2945 598 Pfam PF00270 DEAD/DEAH box helicase 99 259 1.9E-48 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RAM_05630 31a082c840522b619d5da3af563b2945 598 SMART SM00490 329 410 1.2E-33 T 13-10-2018 IPR001650 Helicase, C-terminal RAM_05630 31a082c840522b619d5da3af563b2945 598 Gene3D G3DSA:3.40.50.300 286 454 4.9E-48 T 13-10-2018 RAM_05630 31a082c840522b619d5da3af563b2945 598 Gene3D G3DSA:3.40.50.300 49 279 7.0E-69 T 13-10-2018 RAM_05630 31a082c840522b619d5da3af563b2945 598 SMART SM00487 93 293 1.5E-53 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RAM_05630 31a082c840522b619d5da3af563b2945 598 SUPERFAMILY SSF52540 144 429 5.34E-75 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_05630 31a082c840522b619d5da3af563b2945 598 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 222 230 - T 13-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site RAM_12225 cf4e1c5a46eba3875607e813137a77c9 470 SMART SM00345 17 76 3.7E-21 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_12225 cf4e1c5a46eba3875607e813137a77c9 470 Gene3D G3DSA:3.40.640.10 108 460 6.0E-116 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_12225 cf4e1c5a46eba3875607e813137a77c9 470 Pfam PF00155 Aminotransferase class I and II 143 394 1.5E-16 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RAM_12225 cf4e1c5a46eba3875607e813137a77c9 470 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 50 66 1.2E-7 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_12225 cf4e1c5a46eba3875607e813137a77c9 470 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 36 50 1.2E-7 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_12225 cf4e1c5a46eba3875607e813137a77c9 470 SUPERFAMILY SSF53383 109 466 1.09E-87 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_12225 cf4e1c5a46eba3875607e813137a77c9 470 SUPERFAMILY SSF46785 6 80 2.09E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_12225 cf4e1c5a46eba3875607e813137a77c9 470 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 76 2.5E-20 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_12225 cf4e1c5a46eba3875607e813137a77c9 470 Gene3D G3DSA:1.10.10.10 10 79 1.4E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_14275 fcb125c2af9438fe484c93a54c031dd7 700 ProSitePatterns PS00801 Transketolase signature 1. 34 54 - T 13-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 RAM_14275 fcb125c2af9438fe484c93a54c031dd7 700 ProSitePatterns PS00802 Transketolase signature 2. 500 516 - T 13-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 RAM_14275 fcb125c2af9438fe484c93a54c031dd7 700 SMART SM00861 378 558 3.9E-69 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain RAM_14275 fcb125c2af9438fe484c93a54c031dd7 700 Pfam PF02780 Transketolase, C-terminal domain 571 686 2.2E-17 T 13-10-2018 IPR033248 Transketolase, C-terminal domain RAM_14275 fcb125c2af9438fe484c93a54c031dd7 700 Gene3D G3DSA:3.40.50.970 6 356 3.7E-117 T 13-10-2018 RAM_14275 fcb125c2af9438fe484c93a54c031dd7 700 Gene3D G3DSA:3.40.50.970 358 569 4.4E-82 T 13-10-2018 RAM_14275 fcb125c2af9438fe484c93a54c031dd7 700 SUPERFAMILY SSF52518 21 347 1.4E-102 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_14275 fcb125c2af9438fe484c93a54c031dd7 700 Pfam PF02779 Transketolase, pyrimidine binding domain 377 557 2.4E-45 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain RAM_14275 fcb125c2af9438fe484c93a54c031dd7 700 SUPERFAMILY SSF52922 563 697 3.53E-43 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RAM_14275 fcb125c2af9438fe484c93a54c031dd7 700 SUPERFAMILY SSF52518 371 560 2.14E-67 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_14275 fcb125c2af9438fe484c93a54c031dd7 700 TIGRFAM TIGR00232 tktlase_bact: transketolase 29 692 9.0E-250 T 13-10-2018 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 RAM_14275 fcb125c2af9438fe484c93a54c031dd7 700 Gene3D G3DSA:3.40.50.920 570 700 1.1E-43 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RAM_14275 fcb125c2af9438fe484c93a54c031dd7 700 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 26 361 2.9E-140 T 13-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 RAM_04240 71255e4d4bfc675606be6ddc4bafe263 205 Gene3D G3DSA:3.40.50.150 3 202 2.7E-31 T 13-10-2018 RAM_04240 71255e4d4bfc675606be6ddc4bafe263 205 SUPERFAMILY SSF53335 8 189 9.36E-34 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_04240 71255e4d4bfc675606be6ddc4bafe263 205 Pfam PF08241 Methyltransferase domain 42 138 4.3E-18 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 RAM_09585 413959401abd701954a54d4f9e0759eb 340 SUPERFAMILY SSF53822 59 326 2.54E-66 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_09585 413959401abd701954a54d4f9e0759eb 340 SMART SM00354 1 68 7.6E-18 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_09585 413959401abd701954a54d4f9e0759eb 340 SUPERFAMILY SSF47413 1 56 1.77E-14 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_09585 413959401abd701954a54d4f9e0759eb 340 Gene3D G3DSA:3.40.50.2300 59 316 3.1E-73 T 13-10-2018 RAM_09585 413959401abd701954a54d4f9e0759eb 340 Gene3D G3DSA:3.40.50.2300 156 321 3.1E-73 T 13-10-2018 RAM_09585 413959401abd701954a54d4f9e0759eb 340 Pfam PF13377 Periplasmic binding protein-like domain 164 324 4.5E-41 T 13-10-2018 RAM_09585 413959401abd701954a54d4f9e0759eb 340 Pfam PF00356 Bacterial regulatory proteins, lacI family 1 44 6.4E-15 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_09585 413959401abd701954a54d4f9e0759eb 340 Gene3D G3DSA:1.10.260.40 1 55 2.5E-19 T 13-10-2018 RAM_03710 abc468568045b76b40de8cdda17aa746 187 Pfam PF00380 Ribosomal protein S9/S16 67 187 2.6E-43 T 13-10-2018 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 RAM_03710 abc468568045b76b40de8cdda17aa746 187 SUPERFAMILY SSF54211 63 187 1.93E-44 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RAM_03710 abc468568045b76b40de8cdda17aa746 187 Gene3D G3DSA:3.30.230.10 59 187 1.3E-48 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RAM_03710 abc468568045b76b40de8cdda17aa746 187 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 58 187 32.672 T 13-10-2018 IPR023035 Ribosomal protein S9, bacterial/plastid RAM_03710 abc468568045b76b40de8cdda17aa746 187 ProSitePatterns PS00360 Ribosomal protein S9 signature. 126 144 - T 13-10-2018 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 RAM_43955 eb53ff523bbcbe974a588d0e981456b2 241 Pfam PF02666 Phosphatidylserine decarboxylase 66 231 1.5E-26 T 13-10-2018 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 RAM_43955 eb53ff523bbcbe974a588d0e981456b2 241 Hamap MF_00664 Phosphatidylserine decarboxylase proenzyme [psd]. 26 235 34.859 T 13-10-2018 IPR033175 Phosphatidylserine decarboxylase, archaeal-type KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669 RAM_43955 eb53ff523bbcbe974a588d0e981456b2 241 TIGRFAM TIGR00164 PS_decarb_rel: phosphatidylserine decarboxylase homolog 43 234 3.0E-49 T 13-10-2018 IPR033175 Phosphatidylserine decarboxylase, archaeal-type KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669 RAM_36075 0c4727d18744e1f05b1e0c900edc868a 416 Gene3D G3DSA:3.40.50.2300 159 388 9.0E-112 T 13-10-2018 RAM_36075 0c4727d18744e1f05b1e0c900edc868a 416 Gene3D G3DSA:3.40.50.2300 41 378 9.0E-112 T 13-10-2018 RAM_36075 0c4727d18744e1f05b1e0c900edc868a 416 SUPERFAMILY SSF53822 46 397 8.01E-50 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_36075 0c4727d18744e1f05b1e0c900edc868a 416 Pfam PF13458 Periplasmic binding protein 46 388 6.1E-51 T 13-10-2018 IPR028081 Leucine-binding protein domain RAM_16765 9b233f88b857b7d2a5f29ec3b7e4f668 456 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 315 393 4.2E-14 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_16765 9b233f88b857b7d2a5f29ec3b7e4f668 456 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 400 454 1.7E-12 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_16765 9b233f88b857b7d2a5f29ec3b7e4f668 456 Gene3D G3DSA:2.80.10.50 320 454 5.5E-34 T 13-10-2018 RAM_16765 9b233f88b857b7d2a5f29ec3b7e4f668 456 SUPERFAMILY SSF50370 318 454 1.08E-35 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_16765 9b233f88b857b7d2a5f29ec3b7e4f668 456 SUPERFAMILY SSF53474 60 238 6.99E-21 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_16765 9b233f88b857b7d2a5f29ec3b7e4f668 456 SMART SM00458 318 454 1.2E-8 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_16765 9b233f88b857b7d2a5f29ec3b7e4f668 456 Pfam PF02230 Phospholipase/Carboxylesterase 146 231 2.9E-6 T 13-10-2018 IPR003140 Phospholipase/carboxylesterase/thioesterase GO:0016787 RAM_16765 9b233f88b857b7d2a5f29ec3b7e4f668 456 Gene3D G3DSA:3.40.50.1820 37 310 7.9E-33 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_04920 f4050d3c34112827363761e6182e4004 349 SUPERFAMILY SSF51395 3 338 5.38E-96 T 13-10-2018 RAM_04920 f4050d3c34112827363761e6182e4004 349 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 3 320 5.0E-65 T 13-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 RAM_04920 f4050d3c34112827363761e6182e4004 349 Gene3D G3DSA:3.20.20.70 1 346 2.2E-111 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_19480 cdddc8f8721c23bcf92b6027b216c87b 894 Pfam PF02653 Branched-chain amino acid transport system / permease component 342 533 2.5E-16 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 RAM_19480 cdddc8f8721c23bcf92b6027b216c87b 894 Pfam PF02653 Branched-chain amino acid transport system / permease component 10 269 2.3E-26 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 RAM_19480 cdddc8f8721c23bcf92b6027b216c87b 894 SMART SM00382 662 860 8.7E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_19480 cdddc8f8721c23bcf92b6027b216c87b 894 Gene3D G3DSA:3.40.50.300 638 887 1.9E-58 T 13-10-2018 RAM_19480 cdddc8f8721c23bcf92b6027b216c87b 894 Pfam PF00005 ABC transporter 654 811 1.6E-23 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_19480 cdddc8f8721c23bcf92b6027b216c87b 894 SUPERFAMILY SSF52540 638 883 1.04E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_19480 cdddc8f8721c23bcf92b6027b216c87b 894 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 861 883 8.4E-8 T 13-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RAM_18240 b42fea1e608e2df0bb05ae87cc9893ce 249 Gene3D G3DSA:3.30.750.24 5 117 6.5E-10 T 13-10-2018 IPR036513 STAS domain superfamily RAM_18240 b42fea1e608e2df0bb05ae87cc9893ce 249 SUPERFAMILY SSF55874 151 243 3.23E-5 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_18240 b42fea1e608e2df0bb05ae87cc9893ce 249 SUPERFAMILY SSF52091 9 113 2.35E-7 T 13-10-2018 IPR036513 STAS domain superfamily RAM_18240 b42fea1e608e2df0bb05ae87cc9893ce 249 Gene3D G3DSA:3.30.565.10 120 248 4.5E-18 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_33135 e34f1b77be7e442f53723dc99528508f 279 Gene3D G3DSA:3.20.20.100 1 248 2.0E-45 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_33135 e34f1b77be7e442f53723dc99528508f 279 PRINTS PR00069 Aldo-keto reductase signature 5 29 4.6E-10 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_33135 e34f1b77be7e442f53723dc99528508f 279 PRINTS PR00069 Aldo-keto reductase signature 62 80 4.6E-10 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_33135 e34f1b77be7e442f53723dc99528508f 279 PRINTS PR00069 Aldo-keto reductase signature 97 114 4.6E-10 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_33135 e34f1b77be7e442f53723dc99528508f 279 PRINTS PR00069 Aldo-keto reductase signature 172 196 4.6E-10 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_33135 e34f1b77be7e442f53723dc99528508f 279 SUPERFAMILY SSF51430 2 238 8.77E-45 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_33135 e34f1b77be7e442f53723dc99528508f 279 Pfam PF00248 Aldo/keto reductase family 2 237 8.2E-30 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain RAM_37870 8877be23b4a7398673d01668ada97178 605 Gene3D G3DSA:3.40.190.10 399 549 5.0E-42 T 13-10-2018 RAM_37870 8877be23b4a7398673d01668ada97178 605 Gene3D G3DSA:3.40.190.10 326 585 5.0E-42 T 13-10-2018 RAM_37870 8877be23b4a7398673d01668ada97178 605 SUPERFAMILY SSF53850 324 596 3.15E-40 T 13-10-2018 RAM_37870 8877be23b4a7398673d01668ada97178 605 Pfam PF12849 PBP superfamily domain 320 527 2.3E-23 T 13-10-2018 IPR024370 PBP domain RAM_10010 01f2f8103e601ce9296bf73ec78c127a 291 PRINTS PR00395 Ribosomal protein S2 signature 175 186 2.0E-39 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_10010 01f2f8103e601ce9296bf73ec78c127a 291 PRINTS PR00395 Ribosomal protein S2 signature 37 46 2.0E-39 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_10010 01f2f8103e601ce9296bf73ec78c127a 291 PRINTS PR00395 Ribosomal protein S2 signature 158 175 2.0E-39 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_10010 01f2f8103e601ce9296bf73ec78c127a 291 PRINTS PR00395 Ribosomal protein S2 signature 6 24 2.0E-39 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_10010 01f2f8103e601ce9296bf73ec78c127a 291 PRINTS PR00395 Ribosomal protein S2 signature 87 104 2.0E-39 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_10010 01f2f8103e601ce9296bf73ec78c127a 291 PRINTS PR00395 Ribosomal protein S2 signature 196 210 2.0E-39 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_10010 01f2f8103e601ce9296bf73ec78c127a 291 SUPERFAMILY SSF52313 6 228 6.41E-94 T 13-10-2018 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily RAM_10010 01f2f8103e601ce9296bf73ec78c127a 291 Gene3D G3DSA:3.40.50.10490 10 214 4.4E-92 T 13-10-2018 RAM_10010 01f2f8103e601ce9296bf73ec78c127a 291 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 3 224 2.8E-108 T 13-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_10010 01f2f8103e601ce9296bf73ec78c127a 291 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 6 17 - T 13-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 RAM_10010 01f2f8103e601ce9296bf73ec78c127a 291 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 2 225 42.091 T 13-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_10010 01f2f8103e601ce9296bf73ec78c127a 291 Gene3D G3DSA:1.10.287.610 97 152 4.4E-92 T 13-10-2018 RAM_10010 01f2f8103e601ce9296bf73ec78c127a 291 Pfam PF00318 Ribosomal protein S2 9 224 8.1E-97 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_23440 f266f0414c6732b427f66b2407eea9fe 2276 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 1175 1487 6.1E-28 T 13-10-2018 IPR020801 Polyketide synthase, acyl transferase domain RAM_23440 f266f0414c6732b427f66b2407eea9fe 2276 SUPERFAMILY SSF51412 274 532 2.2E-15 T 13-10-2018 RAM_23440 f266f0414c6732b427f66b2407eea9fe 2276 SUPERFAMILY SSF47336 1615 1699 7.92E-12 T 13-10-2018 IPR036736 ACP-like superfamily RAM_23440 f266f0414c6732b427f66b2407eea9fe 2276 SUPERFAMILY SSF47336 1701 1779 4.61E-11 T 13-10-2018 IPR036736 ACP-like superfamily RAM_23440 f266f0414c6732b427f66b2407eea9fe 2276 SUPERFAMILY SSF52151 1172 1469 3.66E-50 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RAM_23440 f266f0414c6732b427f66b2407eea9fe 2276 Pfam PF00698 Acyl transferase domain 1175 1493 3.8E-36 T 13-10-2018 IPR014043 Acyl transferase RAM_23440 f266f0414c6732b427f66b2407eea9fe 2276 Gene3D G3DSA:3.40.50.720 1845 2273 6.6E-74 T 13-10-2018 RAM_23440 f266f0414c6732b427f66b2407eea9fe 2276 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 2004 2223 1.2E-28 T 13-10-2018 RAM_23440 f266f0414c6732b427f66b2407eea9fe 2276 SUPERFAMILY SSF51735 1827 1974 9.85E-8 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_23440 f266f0414c6732b427f66b2407eea9fe 2276 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 908 1025 2.1E-36 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal RAM_23440 f266f0414c6732b427f66b2407eea9fe 2276 Gene3D G3DSA:3.40.366.10 1175 1454 1.0E-70 T 13-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 RAM_23440 f266f0414c6732b427f66b2407eea9fe 2276 SUPERFAMILY SSF51412 18 219 1.1E-15 T 13-10-2018 RAM_23440 f266f0414c6732b427f66b2407eea9fe 2276 Gene3D G3DSA:1.10.1200.10 1694 1781 4.7E-24 T 13-10-2018 IPR036736 ACP-like superfamily RAM_23440 f266f0414c6732b427f66b2407eea9fe 2276 Gene3D G3DSA:1.10.1200.10 1609 1693 1.2E-23 T 13-10-2018 IPR036736 ACP-like superfamily RAM_23440 f266f0414c6732b427f66b2407eea9fe 2276 Pfam PF00550 Phosphopantetheine attachment site 1705 1773 8.9E-5 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_23440 f266f0414c6732b427f66b2407eea9fe 2276 Pfam PF00550 Phosphopantetheine attachment site 1621 1688 2.3E-4 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_23440 f266f0414c6732b427f66b2407eea9fe 2276 SUPERFAMILY SSF53901 635 1067 1.27E-76 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_23440 f266f0414c6732b427f66b2407eea9fe 2276 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 637 900 2.0E-69 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal RAM_23440 f266f0414c6732b427f66b2407eea9fe 2276 SMART SM00825 Beta-ketoacyl synthase 638 1078 4.5E-116 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RAM_23440 f266f0414c6732b427f66b2407eea9fe 2276 Pfam PF08659 KR domain 2005 2221 1.4E-35 T 13-10-2018 IPR013968 Polyketide synthase, ketoreductase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_23440 f266f0414c6732b427f66b2407eea9fe 2276 SUPERFAMILY SSF51735 2003 2275 6.9E-32 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_23440 f266f0414c6732b427f66b2407eea9fe 2276 Gene3D G3DSA:3.30.70.250 1297 1367 1.0E-70 T 13-10-2018 RAM_23440 f266f0414c6732b427f66b2407eea9fe 2276 Gene3D G3DSA:3.20.20.70 269 628 5.2E-68 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_23440 f266f0414c6732b427f66b2407eea9fe 2276 Gene3D G3DSA:3.20.20.70 18 258 2.1E-28 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_23440 f266f0414c6732b427f66b2407eea9fe 2276 Pfam PF03060 Nitronate monooxygenase 98 199 5.2E-8 T 13-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 RAM_23440 f266f0414c6732b427f66b2407eea9fe 2276 Pfam PF03060 Nitronate monooxygenase 273 596 2.4E-12 T 13-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 RAM_23440 f266f0414c6732b427f66b2407eea9fe 2276 Gene3D G3DSA:3.40.47.10 634 1152 1.7E-161 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_23440 f266f0414c6732b427f66b2407eea9fe 2276 SUPERFAMILY SSF55048 1302 1366 1.23E-11 T 13-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding RAM_44270 af1608fec6fb72cbe964ab4d0b797753 133 SUPERFAMILY SSF51735 4 127 6.47E-39 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_44270 af1608fec6fb72cbe964ab4d0b797753 133 Gene3D G3DSA:3.40.50.720 2 130 5.8E-42 T 13-10-2018 RAM_44270 af1608fec6fb72cbe964ab4d0b797753 133 Pfam PF13380 CoA binding domain 12 124 9.0E-40 T 13-10-2018 IPR003781 CoA-binding GO:0048037 RAM_44270 af1608fec6fb72cbe964ab4d0b797753 133 SMART SM00881 7 99 6.7E-26 T 13-10-2018 IPR003781 CoA-binding GO:0048037 RAM_19840 41b39a9899b73c1829173d7993500f63 446 Gene3D G3DSA:3.30.70.360 194 355 1.7E-101 T 13-10-2018 RAM_19840 41b39a9899b73c1829173d7993500f63 446 Pfam PF07687 Peptidase dimerisation domain 186 336 1.2E-9 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain RAM_19840 41b39a9899b73c1829173d7993500f63 446 SUPERFAMILY SSF53187 2 436 2.6E-50 T 13-10-2018 RAM_19840 41b39a9899b73c1829173d7993500f63 446 Gene3D G3DSA:3.40.630.10 10 420 1.7E-101 T 13-10-2018 RAM_19840 41b39a9899b73c1829173d7993500f63 446 Pfam PF01546 Peptidase family M20/M25/M40 77 426 1.0E-32 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 RAM_24455 352b37b17c1d5839ce15d176dc1420df 2473 Gene3D G3DSA:3.30.559.10 1644 1809 3.5E-39 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_24455 352b37b17c1d5839ce15d176dc1420df 2473 SUPERFAMILY SSF52777 2081 2237 4.08E-38 T 13-10-2018 RAM_24455 352b37b17c1d5839ce15d176dc1420df 2473 ProSitePatterns PS00455 Putative AMP-binding domain signature. 158 169 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_24455 352b37b17c1d5839ce15d176dc1420df 2473 SUPERFAMILY SSF52777 791 1040 8.89E-53 T 13-10-2018 RAM_24455 352b37b17c1d5839ce15d176dc1420df 2473 Pfam PF13193 AMP-binding enzyme C-terminal domain 424 497 4.1E-9 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_24455 352b37b17c1d5839ce15d176dc1420df 2473 Pfam PF13193 AMP-binding enzyme C-terminal domain 1472 1546 1.2E-13 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_24455 352b37b17c1d5839ce15d176dc1420df 2473 Gene3D G3DSA:3.30.559.30 792 1045 9.6E-119 T 13-10-2018 RAM_24455 352b37b17c1d5839ce15d176dc1420df 2473 Pfam PF00501 AMP-binding enzyme 21 412 1.7E-98 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_24455 352b37b17c1d5839ce15d176dc1420df 2473 Pfam PF00501 AMP-binding enzyme 1070 1464 7.7E-81 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_24455 352b37b17c1d5839ce15d176dc1420df 2473 SUPERFAMILY SSF47336 516 582 4.06E-12 T 13-10-2018 IPR036736 ACP-like superfamily RAM_24455 352b37b17c1d5839ce15d176dc1420df 2473 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1090 1488 2.2E-122 T 13-10-2018 IPR010071 Amino acid adenylation domain RAM_24455 352b37b17c1d5839ce15d176dc1420df 2473 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 41 437 8.4E-134 T 13-10-2018 IPR010071 Amino acid adenylation domain RAM_24455 352b37b17c1d5839ce15d176dc1420df 2473 SUPERFAMILY SSF52777 1659 1819 6.56E-32 T 13-10-2018 RAM_24455 352b37b17c1d5839ce15d176dc1420df 2473 ProSitePatterns PS00012 Phosphopantetheine attachment site. 544 559 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_24455 352b37b17c1d5839ce15d176dc1420df 2473 Gene3D G3DSA:3.30.559.10 2081 2424 3.2E-96 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_24455 352b37b17c1d5839ce15d176dc1420df 2473 SMART SM00823 Phosphopantetheine attachment site 519 588 7.6E-4 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_24455 352b37b17c1d5839ce15d176dc1420df 2473 SMART SM00823 Phosphopantetheine attachment site 1574 1642 4.5E-5 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_24455 352b37b17c1d5839ce15d176dc1420df 2473 SUPERFAMILY SSF47336 1566 1635 4.58E-19 T 13-10-2018 IPR036736 ACP-like superfamily RAM_24455 352b37b17c1d5839ce15d176dc1420df 2473 Gene3D G3DSA:1.10.1200.10 509 591 9.2E-17 T 13-10-2018 IPR036736 ACP-like superfamily RAM_24455 352b37b17c1d5839ce15d176dc1420df 2473 Gene3D G3DSA:1.10.1200.10 1563 1640 3.8E-24 T 13-10-2018 IPR036736 ACP-like superfamily RAM_24455 352b37b17c1d5839ce15d176dc1420df 2473 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1205 1216 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_24455 352b37b17c1d5839ce15d176dc1420df 2473 Pfam PF00668 Condensation domain 1657 1931 9.3E-38 T 13-10-2018 IPR001242 Condensation domain RAM_24455 352b37b17c1d5839ce15d176dc1420df 2473 Pfam PF00668 Condensation domain 617 1046 2.3E-76 T 13-10-2018 IPR001242 Condensation domain RAM_24455 352b37b17c1d5839ce15d176dc1420df 2473 Pfam PF00668 Condensation domain 2076 2407 7.5E-55 T 13-10-2018 IPR001242 Condensation domain RAM_24455 352b37b17c1d5839ce15d176dc1420df 2473 Gene3D G3DSA:3.40.50.12780 1056 1458 2.2E-120 T 13-10-2018 RAM_24455 352b37b17c1d5839ce15d176dc1420df 2473 Gene3D G3DSA:3.40.50.12780 6 407 3.7E-141 T 13-10-2018 RAM_24455 352b37b17c1d5839ce15d176dc1420df 2473 SUPERFAMILY SSF52777 614 806 1.11E-43 T 13-10-2018 RAM_24455 352b37b17c1d5839ce15d176dc1420df 2473 Gene3D G3DSA:3.30.559.30 1810 2043 1.2E-45 T 13-10-2018 RAM_24455 352b37b17c1d5839ce15d176dc1420df 2473 SUPERFAMILY SSF52777 1832 2042 3.67E-26 T 13-10-2018 RAM_24455 352b37b17c1d5839ce15d176dc1420df 2473 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1598 1613 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_24455 352b37b17c1d5839ce15d176dc1420df 2473 SUPERFAMILY SSF56801 14 533 1.83E-152 T 13-10-2018 RAM_24455 352b37b17c1d5839ce15d176dc1420df 2473 Gene3D G3DSA:3.30.559.30 2239 2471 3.2E-96 T 13-10-2018 RAM_24455 352b37b17c1d5839ce15d176dc1420df 2473 Gene3D G3DSA:3.30.559.10 622 980 9.6E-119 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_24455 352b37b17c1d5839ce15d176dc1420df 2473 Pfam PF00550 Phosphopantetheine attachment site 1577 1635 5.4E-11 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_24455 352b37b17c1d5839ce15d176dc1420df 2473 Pfam PF00550 Phosphopantetheine attachment site 524 582 4.8E-9 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_24455 352b37b17c1d5839ce15d176dc1420df 2473 SUPERFAMILY SSF52777 2239 2472 2.67E-43 T 13-10-2018 RAM_24455 352b37b17c1d5839ce15d176dc1420df 2473 SUPERFAMILY SSF56801 1029 1587 2.49E-140 T 13-10-2018 RAM_24455 352b37b17c1d5839ce15d176dc1420df 2473 Gene3D G3DSA:3.30.300.30 408 508 2.2E-30 T 13-10-2018 RAM_24455 352b37b17c1d5839ce15d176dc1420df 2473 Gene3D G3DSA:3.30.300.30 1459 1562 3.9E-33 T 13-10-2018 RAM_11045 30075e73f9ab74add9be580811e9dbba 597 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 13-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 RAM_11045 30075e73f9ab74add9be580811e9dbba 597 Pfam PF00364 Biotin-requiring enzyme 5 76 1.4E-21 T 13-10-2018 IPR000089 Biotin/lipoyl attachment RAM_11045 30075e73f9ab74add9be580811e9dbba 597 Pfam PF00364 Biotin-requiring enzyme 135 207 1.2E-21 T 13-10-2018 IPR000089 Biotin/lipoyl attachment RAM_11045 30075e73f9ab74add9be580811e9dbba 597 SUPERFAMILY SSF47005 276 318 1.31E-11 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 RAM_11045 30075e73f9ab74add9be580811e9dbba 597 Pfam PF02817 e3 binding domain 280 314 1.5E-14 T 13-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 RAM_11045 30075e73f9ab74add9be580811e9dbba 597 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 361 588 3.3E-70 T 13-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 RAM_11045 30075e73f9ab74add9be580811e9dbba 597 Gene3D G3DSA:4.10.320.10 281 323 4.0E-16 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 RAM_11045 30075e73f9ab74add9be580811e9dbba 597 SUPERFAMILY SSF52777 347 588 1.78E-74 T 13-10-2018 RAM_11045 30075e73f9ab74add9be580811e9dbba 597 SUPERFAMILY SSF51230 134 227 1.44E-26 T 13-10-2018 IPR011053 Single hybrid motif RAM_11045 30075e73f9ab74add9be580811e9dbba 597 SUPERFAMILY SSF51230 1 95 1.11E-26 T 13-10-2018 IPR011053 Single hybrid motif RAM_11045 30075e73f9ab74add9be580811e9dbba 597 Gene3D G3DSA:2.40.50.100 2 104 3.2E-25 T 13-10-2018 RAM_11045 30075e73f9ab74add9be580811e9dbba 597 Gene3D G3DSA:2.40.50.100 128 229 2.2E-26 T 13-10-2018 RAM_11045 30075e73f9ab74add9be580811e9dbba 597 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 158 187 - T 13-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 RAM_11045 30075e73f9ab74add9be580811e9dbba 597 TIGRFAM TIGR02927 SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase 1 597 3.9E-275 T 13-10-2018 IPR014276 2-oxoglutarate dehydrogenase, E2 component KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00620+2.3.1.12 RAM_11045 30075e73f9ab74add9be580811e9dbba 597 Gene3D G3DSA:3.30.559.10 341 594 3.8E-80 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_23295 27e4f48510f6df5163ee557cb2acc818 245 SMART SM00895 109 231 4.6E-17 T 13-10-2018 IPR011711 GntR, C-terminal RAM_23295 27e4f48510f6df5163ee557cb2acc818 245 SUPERFAMILY SSF48008 105 237 7.59E-24 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_23295 27e4f48510f6df5163ee557cb2acc818 245 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 73 89 1.2E-5 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_23295 27e4f48510f6df5163ee557cb2acc818 245 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 59 73 1.2E-5 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_23295 27e4f48510f6df5163ee557cb2acc818 245 Pfam PF00392 Bacterial regulatory proteins, gntR family 38 99 4.8E-19 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_23295 27e4f48510f6df5163ee557cb2acc818 245 SUPERFAMILY SSF46785 33 103 1.49E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_23295 27e4f48510f6df5163ee557cb2acc818 245 Gene3D G3DSA:1.20.120.530 102 241 8.9E-26 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_23295 27e4f48510f6df5163ee557cb2acc818 245 SMART SM00345 41 99 2.8E-18 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_23295 27e4f48510f6df5163ee557cb2acc818 245 Gene3D G3DSA:1.10.10.10 22 100 1.7E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_23295 27e4f48510f6df5163ee557cb2acc818 245 Pfam PF07729 FCD domain 109 230 5.7E-22 T 13-10-2018 IPR011711 GntR, C-terminal RAM_02245 23e1021ab6accb225b54f0707c4513e6 232 Gene3D G3DSA:1.10.3720.10 24 222 2.1E-27 T 13-10-2018 IPR035906 MetI-like superfamily RAM_02245 23e1021ab6accb225b54f0707c4513e6 232 SUPERFAMILY SSF161098 29 212 4.84E-29 T 13-10-2018 IPR035906 MetI-like superfamily RAM_02245 23e1021ab6accb225b54f0707c4513e6 232 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 49 214 2.9E-14 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_45665 cded3230dd709b854cdd1e3bdd396252 333 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 331 2.7E-37 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_45665 cded3230dd709b854cdd1e3bdd396252 333 Gene3D G3DSA:1.10.3720.10 90 323 1.9E-20 T 13-10-2018 IPR035906 MetI-like superfamily RAM_45665 cded3230dd709b854cdd1e3bdd396252 333 SUPERFAMILY SSF161098 92 317 7.06E-17 T 13-10-2018 IPR035906 MetI-like superfamily RAM_24875 6b10442d731adf8a08296003a322de5e 323 Pfam PF13602 Zinc-binding dehydrogenase 202 321 9.9E-13 T 13-10-2018 RAM_24875 6b10442d731adf8a08296003a322de5e 323 SUPERFAMILY SSF51735 136 276 2.58E-21 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_24875 6b10442d731adf8a08296003a322de5e 323 Gene3D G3DSA:3.90.180.10 8 320 3.8E-63 T 13-10-2018 RAM_24875 6b10442d731adf8a08296003a322de5e 323 SMART SM00829 10 321 6.5E-10 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_24875 6b10442d731adf8a08296003a322de5e 323 Gene3D G3DSA:3.40.50.720 146 272 3.8E-63 T 13-10-2018 RAM_24875 6b10442d731adf8a08296003a322de5e 323 SUPERFAMILY SSF50129 1 165 2.83E-27 T 13-10-2018 IPR011032 GroES-like superfamily RAM_42860 a72abcab3a9fadd0e6cda8ccee3dadaf 232 Gene3D G3DSA:3.40.50.10310 5 230 2.4E-58 T 13-10-2018 IPR024087 Creatininase-like superfamily KEGG: 00740+3.5.1.102|MetaCyc: PWY-6167 RAM_42860 a72abcab3a9fadd0e6cda8ccee3dadaf 232 SUPERFAMILY SSF102215 9 227 1.57E-54 T 13-10-2018 IPR024087 Creatininase-like superfamily KEGG: 00740+3.5.1.102|MetaCyc: PWY-6167 RAM_42860 a72abcab3a9fadd0e6cda8ccee3dadaf 232 Pfam PF02633 Creatinine amidohydrolase 12 225 9.2E-56 T 13-10-2018 IPR003785 Creatininase/formamide hydrolase KEGG: 00740+3.5.1.102|MetaCyc: PWY-6167 RAM_36875 f121b03678521ad24e35143518c2731a 376 Pfam PF04909 Amidohydrolase 76 373 9.3E-28 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RAM_36875 f121b03678521ad24e35143518c2731a 376 ProSitePatterns PS01114 GPR1/FUN34/yaaH family signature. 182 191 - T 13-10-2018 IPR000791 Acetate transporter GPR1/FUN34/SatP family GO:0016021 RAM_36875 f121b03678521ad24e35143518c2731a 376 SUPERFAMILY SSF51556 1 373 1.69E-73 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_36875 f121b03678521ad24e35143518c2731a 376 Gene3D G3DSA:3.20.20.140 1 371 2.6E-95 T 13-10-2018 RAM_38340 231a73f9bc1c443cd15297a864612838 303 Pfam PF10503 Esterase PHB depolymerase 44 249 1.0E-20 T 13-10-2018 IPR010126 Esterase, PHB depolymerase GO:0005576|GO:0016787 RAM_38340 231a73f9bc1c443cd15297a864612838 303 TIGRFAM TIGR01840 esterase_phb: esterase, PHB depolymerase family 42 252 6.5E-44 T 13-10-2018 IPR010126 Esterase, PHB depolymerase GO:0005576|GO:0016787 RAM_38340 231a73f9bc1c443cd15297a864612838 303 Gene3D G3DSA:3.40.50.1820 16 295 2.9E-49 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_38340 231a73f9bc1c443cd15297a864612838 303 SUPERFAMILY SSF53474 23 102 1.18E-6 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_38340 231a73f9bc1c443cd15297a864612838 303 SUPERFAMILY SSF53474 126 291 1.23E-41 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_23330 39536995f63c6a38df542754c3fd2ae2 556 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 381 533 3.2E-33 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RAM_23330 39536995f63c6a38df542754c3fd2ae2 556 SUPERFAMILY SSF52467 149 350 3.09E-53 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily RAM_23330 39536995f63c6a38df542754c3fd2ae2 556 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 185 321 6.1E-40 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 RAM_23330 39536995f63c6a38df542754c3fd2ae2 556 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 2 166 2.5E-60 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RAM_23330 39536995f63c6a38df542754c3fd2ae2 556 SUPERFAMILY SSF52518 2 169 2.47E-57 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_23330 39536995f63c6a38df542754c3fd2ae2 556 Gene3D G3DSA:3.40.50.970 1 174 1.4E-68 T 13-10-2018 RAM_23330 39536995f63c6a38df542754c3fd2ae2 556 SUPERFAMILY SSF52518 357 542 1.07E-46 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_23330 39536995f63c6a38df542754c3fd2ae2 556 Gene3D G3DSA:3.40.50.970 349 556 1.8E-53 T 13-10-2018 RAM_23330 39536995f63c6a38df542754c3fd2ae2 556 Gene3D G3DSA:3.40.50.1220 176 348 1.8E-54 T 13-10-2018 RAM_32735 7080afa0c0b3b5d6fbe61638f9e32a06 199 SUPERFAMILY SSF53597 8 195 9.69E-22 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RAM_32735 7080afa0c0b3b5d6fbe61638f9e32a06 199 Pfam PF01872 RibD C-terminal domain 9 185 1.4E-20 T 13-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 RAM_32735 7080afa0c0b3b5d6fbe61638f9e32a06 199 Gene3D G3DSA:3.40.430.10 7 195 6.7E-33 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RAM_03910 1dd3ed32ce6e561d403204d8b03c23e5 198 Gene3D G3DSA:3.40.50.2300 2 128 2.8E-19 T 13-10-2018 RAM_03910 1dd3ed32ce6e561d403204d8b03c23e5 198 Gene3D G3DSA:1.10.10.10 129 198 5.6E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_03910 1dd3ed32ce6e561d403204d8b03c23e5 198 ProSitePatterns PS00622 LuxR-type HTH domain signature. 151 178 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_03910 1dd3ed32ce6e561d403204d8b03c23e5 198 SUPERFAMILY SSF46894 125 197 1.94E-21 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_03910 1dd3ed32ce6e561d403204d8b03c23e5 198 SMART SM00448 2 115 5.9E-7 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_03910 1dd3ed32ce6e561d403204d8b03c23e5 198 SMART SM00421 134 191 6.1E-25 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_03910 1dd3ed32ce6e561d403204d8b03c23e5 198 Pfam PF00072 Response regulator receiver domain 4 115 2.2E-12 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_03910 1dd3ed32ce6e561d403204d8b03c23e5 198 Pfam PF00196 Bacterial regulatory proteins, luxR family 136 189 2.2E-19 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_03910 1dd3ed32ce6e561d403204d8b03c23e5 198 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 137 151 8.7E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_03910 1dd3ed32ce6e561d403204d8b03c23e5 198 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 151 167 8.7E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_03910 1dd3ed32ce6e561d403204d8b03c23e5 198 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 167 179 8.7E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_03910 1dd3ed32ce6e561d403204d8b03c23e5 198 SUPERFAMILY SSF52172 3 123 1.57E-16 T 13-10-2018 IPR011006 CheY-like superfamily RAM_34315 9236edd5d329cbfd84df78f4ff542d54 788 Gene3D G3DSA:3.60.15.10 531 776 6.2E-50 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_34315 9236edd5d329cbfd84df78f4ff542d54 788 Pfam PF03772 Competence protein 230 494 3.1E-51 T 13-10-2018 IPR004477 ComEC/Rec2-related protein RAM_34315 9236edd5d329cbfd84df78f4ff542d54 788 SMART SM00849 537 737 3.7E-11 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_34315 9236edd5d329cbfd84df78f4ff542d54 788 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 252 421 5.9E-20 T 13-10-2018 IPR004477 ComEC/Rec2-related protein RAM_34315 9236edd5d329cbfd84df78f4ff542d54 788 Pfam PF00753 Metallo-beta-lactamase superfamily 535 716 5.9E-10 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_34315 9236edd5d329cbfd84df78f4ff542d54 788 Pfam PF13567 Domain of unknown function (DUF4131) 31 178 7.3E-10 T 13-10-2018 IPR025405 Domain of unknown function DUF4131 RAM_34315 9236edd5d329cbfd84df78f4ff542d54 788 SUPERFAMILY SSF56281 530 772 3.93E-35 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_22090 f0595f83cd9dc52811569656694ff465 327 Gene3D G3DSA:3.40.30.130 1 155 5.6E-54 T 13-10-2018 RAM_22090 f0595f83cd9dc52811569656694ff465 327 Gene3D G3DSA:1.20.1050.10 156 327 5.2E-75 T 13-10-2018 RAM_22090 f0595f83cd9dc52811569656694ff465 327 SUPERFAMILY SSF47616 154 320 1.81E-34 T 13-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily RAM_22090 f0595f83cd9dc52811569656694ff465 327 Pfam PF13409 Glutathione S-transferase, N-terminal domain 40 128 7.7E-8 T 13-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RAM_22090 f0595f83cd9dc52811569656694ff465 327 Pfam PF13410 Glutathione S-transferase, C-terminal domain 181 250 1.3E-12 T 13-10-2018 RAM_22090 f0595f83cd9dc52811569656694ff465 327 SUPERFAMILY SSF52833 17 89 4.25E-5 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RAM_22090 f0595f83cd9dc52811569656694ff465 327 PIRSF PIRSF015753 1 301 2.5E-106 T 13-10-2018 IPR016639 Glutathione S-transferase Omega/GSH GO:0004364 RAM_19545 20244a00b782774834d63562d93b40db 324 Gene3D G3DSA:3.20.20.70 1 323 2.1E-124 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_19545 20244a00b782774834d63562d93b40db 324 Pfam PF03060 Nitronate monooxygenase 5 308 2.0E-55 T 13-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 RAM_19545 20244a00b782774834d63562d93b40db 324 SUPERFAMILY SSF51412 3 315 1.96E-70 T 13-10-2018 RAM_23390 6cd4b19a082539df52f8eecfbbcb3c6a 225 Gene3D G3DSA:1.10.10.10 145 217 2.7E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_23390 6cd4b19a082539df52f8eecfbbcb3c6a 225 SUPERFAMILY SSF46785 149 220 8.16E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_23390 6cd4b19a082539df52f8eecfbbcb3c6a 225 PRINTS PR00502 NUDIX hydrolase family signature 52 67 7.5E-5 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RAM_23390 6cd4b19a082539df52f8eecfbbcb3c6a 225 PRINTS PR00502 NUDIX hydrolase family signature 38 52 7.5E-5 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RAM_23390 6cd4b19a082539df52f8eecfbbcb3c6a 225 Gene3D G3DSA:3.90.79.10 8 144 3.3E-44 T 13-10-2018 RAM_23390 6cd4b19a082539df52f8eecfbbcb3c6a 225 ProSitePatterns PS00893 Nudix box signature. 43 64 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RAM_23390 6cd4b19a082539df52f8eecfbbcb3c6a 225 SUPERFAMILY SSF55811 4 146 1.62E-30 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RAM_23390 6cd4b19a082539df52f8eecfbbcb3c6a 225 Pfam PF00293 NUDIX domain 11 135 1.8E-19 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RAM_08320 0be7786f77a3c5c498a9dea1faa1bf3c 426 SUPERFAMILY SSF51621 5 425 1.97E-157 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 RAM_08320 0be7786f77a3c5c498a9dea1faa1bf3c 426 Gene3D G3DSA:3.20.20.60 6 409 7.3E-169 T 13-10-2018 RAM_08320 0be7786f77a3c5c498a9dea1faa1bf3c 426 ProSitePatterns PS00161 Isocitrate lyase signature. 187 192 - T 13-10-2018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824 RAM_08320 0be7786f77a3c5c498a9dea1faa1bf3c 426 TIGRFAM TIGR01346 isocit_lyase: isocitrate lyase 10 249 6.0E-106 T 13-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 RAM_08320 0be7786f77a3c5c498a9dea1faa1bf3c 426 PIRSF PIRSF001362 1 426 2.9E-238 T 13-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 RAM_08320 0be7786f77a3c5c498a9dea1faa1bf3c 426 Pfam PF00463 Isocitrate lyase family 251 422 3.3E-43 T 13-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 RAM_08320 0be7786f77a3c5c498a9dea1faa1bf3c 426 Pfam PF00463 Isocitrate lyase family 14 250 4.2E-53 T 13-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 RAM_20460 8d94a9310b12cfbae81e9bc34f39f9bd 902 Pfam PF03704 Bacterial transcriptional activator domain 96 240 3.9E-36 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_20460 8d94a9310b12cfbae81e9bc34f39f9bd 902 SUPERFAMILY SSF46894 2 89 2.61E-12 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_20460 8d94a9310b12cfbae81e9bc34f39f9bd 902 SUPERFAMILY SSF52540 321 484 1.08E-6 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_20460 8d94a9310b12cfbae81e9bc34f39f9bd 902 Gene3D G3DSA:1.10.10.10 1 91 6.1E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_20460 8d94a9310b12cfbae81e9bc34f39f9bd 902 SMART SM00862 15 89 9.9E-11 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_20460 8d94a9310b12cfbae81e9bc34f39f9bd 902 SUPERFAMILY SSF48452 91 249 4.25E-28 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_20460 8d94a9310b12cfbae81e9bc34f39f9bd 902 Pfam PF00486 Transcriptional regulatory protein, C terminal 22 89 4.0E-7 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_20460 8d94a9310b12cfbae81e9bc34f39f9bd 902 Gene3D G3DSA:1.25.40.10 93 268 1.3E-38 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_20460 8d94a9310b12cfbae81e9bc34f39f9bd 902 Pfam PF05729 NACHT domain 322 477 1.6E-7 T 13-10-2018 IPR007111 NACHT nucleoside triphosphatase RAM_20460 8d94a9310b12cfbae81e9bc34f39f9bd 902 SMART SM01043 96 240 1.1E-37 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_13765 808eabcadb053f6516c61671fd9d5792 231 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 58 8.0E-12 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_13765 808eabcadb053f6516c61671fd9d5792 231 Gene3D G3DSA:1.10.357.10 2 190 1.4E-20 T 13-10-2018 RAM_13765 808eabcadb053f6516c61671fd9d5792 231 SUPERFAMILY SSF46689 3 74 2.49E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_13765 808eabcadb053f6516c61671fd9d5792 231 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 3.8E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_13765 808eabcadb053f6516c61671fd9d5792 231 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 3.8E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_41155 6452bcfbc1c08d3ede86b224a6eda5c2 305 Pfam PF01545 Cation efflux family 11 212 5.3E-35 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RAM_41155 6452bcfbc1c08d3ede86b224a6eda5c2 305 Gene3D G3DSA:1.20.1510.10 7 217 1.3E-31 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily RAM_41155 6452bcfbc1c08d3ede86b224a6eda5c2 305 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 8 287 1.2E-37 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RAM_41155 6452bcfbc1c08d3ede86b224a6eda5c2 305 SUPERFAMILY SSF161111 6 219 1.57E-38 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily RAM_03310 004bffb0707a9619122019738cf014ce 250 Gene3D G3DSA:3.40.50.1820 1 240 1.3E-80 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_03310 004bffb0707a9619122019738cf014ce 250 SMART SM00824 Thioesterase 15 237 0.0074 T 13-10-2018 IPR020802 Polyketide synthase, thioesterase domain GO:0009058|GO:0016788 RAM_03310 004bffb0707a9619122019738cf014ce 250 Pfam PF00975 Thioesterase domain 13 231 7.7E-55 T 13-10-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 RAM_03310 004bffb0707a9619122019738cf014ce 250 SUPERFAMILY SSF53474 4 235 5.86E-56 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_08260 34371850f60edeec12b4700df6e61913 273 Pfam PF00753 Metallo-beta-lactamase superfamily 76 232 4.0E-6 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_08260 34371850f60edeec12b4700df6e61913 273 Gene3D G3DSA:3.60.15.10 48 231 9.1E-10 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_08260 34371850f60edeec12b4700df6e61913 273 SMART SM00849 75 245 0.001 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_08260 34371850f60edeec12b4700df6e61913 273 SUPERFAMILY SSF56281 56 240 5.11E-27 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_03605 6eed574830fa6538108ee38a92bb8f8c 135 Pfam PF00411 Ribosomal protein S11 25 134 3.9E-49 T 13-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 RAM_03605 6eed574830fa6538108ee38a92bb8f8c 135 ProSitePatterns PS00054 Ribosomal protein S11 signature. 103 125 - T 13-10-2018 IPR018102 Ribosomal S11, conserved site RAM_03605 6eed574830fa6538108ee38a92bb8f8c 135 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 4 135 33.922 T 13-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 RAM_03605 6eed574830fa6538108ee38a92bb8f8c 135 SUPERFAMILY SSF53137 20 135 1.35E-49 T 13-10-2018 RAM_03605 6eed574830fa6538108ee38a92bb8f8c 135 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 16 132 2.1E-58 T 13-10-2018 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_03605 6eed574830fa6538108ee38a92bb8f8c 135 Gene3D G3DSA:3.30.420.80 8 135 4.9E-54 T 13-10-2018 IPR036967 Ribosomal protein S11 superfamily GO:0003735|GO:0005840|GO:0006412 RAM_03605 6eed574830fa6538108ee38a92bb8f8c 135 PIRSF PIRSF002131 4 135 5.9E-54 T 13-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 RAM_01250 772a4fc79c902a43560e8f55da1571d6 272 Pfam PF01734 Patatin-like phospholipase 1 190 7.3E-14 T 13-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 RAM_01250 772a4fc79c902a43560e8f55da1571d6 272 Gene3D G3DSA:3.40.1090.10 1 80 2.3E-6 T 13-10-2018 RAM_01250 772a4fc79c902a43560e8f55da1571d6 272 Gene3D G3DSA:3.40.1090.10 104 190 2.1E-15 T 13-10-2018 RAM_01250 772a4fc79c902a43560e8f55da1571d6 272 SUPERFAMILY SSF52151 1 203 4.19E-29 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RAM_11325 0b3638bc3422343f35d166501b1b9d2d 336 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 22 329 1.7E-88 T 13-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 RAM_11325 0b3638bc3422343f35d166501b1b9d2d 336 Pfam PF02445 Quinolinate synthetase A protein 23 328 1.8E-110 T 13-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 RAM_11325 0b3638bc3422343f35d166501b1b9d2d 336 SUPERFAMILY SSF142754 21 329 3.92E-101 T 13-10-2018 IPR036094 Quinolinate synthetase A superfamily GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 RAM_11325 0b3638bc3422343f35d166501b1b9d2d 336 Gene3D G3DSA:3.40.50.10800 23 310 1.1E-109 T 13-10-2018 RAM_11325 0b3638bc3422343f35d166501b1b9d2d 336 Gene3D G3DSA:3.40.50.10800 103 328 1.1E-109 T 13-10-2018 RAM_11325 0b3638bc3422343f35d166501b1b9d2d 336 Gene3D G3DSA:3.40.50.10800 188 285 1.1E-109 T 13-10-2018 RAM_40720 9a63d19316c6e2501b78cc3bf1c6a0ca 537 Pfam PF01039 Carboxyl transferase domain 50 527 1.0E-153 T 13-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 RAM_40720 9a63d19316c6e2501b78cc3bf1c6a0ca 537 Gene3D G3DSA:3.90.226.10 275 537 3.6E-106 T 13-10-2018 RAM_40720 9a63d19316c6e2501b78cc3bf1c6a0ca 537 SUPERFAMILY SSF52096 280 537 3.15E-89 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_40720 9a63d19316c6e2501b78cc3bf1c6a0ca 537 Gene3D G3DSA:3.90.226.10 10 273 1.1E-97 T 13-10-2018 RAM_40720 9a63d19316c6e2501b78cc3bf1c6a0ca 537 SUPERFAMILY SSF52096 27 273 4.98E-72 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_22440 3a5bbfc31fe309d2dd3a361473c589b3 506 Gene3D G3DSA:3.40.50.300 256 506 1.5E-39 T 13-10-2018 RAM_22440 3a5bbfc31fe309d2dd3a361473c589b3 506 SMART SM00382 29 219 1.2E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_22440 3a5bbfc31fe309d2dd3a361473c589b3 506 SMART SM00382 286 481 1.1E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_22440 3a5bbfc31fe309d2dd3a361473c589b3 506 ProSitePatterns PS00211 ABC transporters family signature. 406 420 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_22440 3a5bbfc31fe309d2dd3a361473c589b3 506 Pfam PF00005 ABC transporter 278 433 6.4E-17 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_22440 3a5bbfc31fe309d2dd3a361473c589b3 506 SUPERFAMILY SSF52540 246 495 1.51E-41 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_22440 3a5bbfc31fe309d2dd3a361473c589b3 506 Gene3D G3DSA:3.40.50.300 1 246 2.2E-55 T 13-10-2018 RAM_22440 3a5bbfc31fe309d2dd3a361473c589b3 506 Pfam PF00005 ABC transporter 20 171 2.0E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_22440 3a5bbfc31fe309d2dd3a361473c589b3 506 SUPERFAMILY SSF52540 4 231 3.15E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_19330 fa11c881664801d88835517eee026f61 227 Gene3D G3DSA:3.40.50.10490 28 221 8.1E-54 T 13-10-2018 RAM_19330 fa11c881664801d88835517eee026f61 227 Pfam PF13580 SIS domain 45 174 1.8E-17 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 RAM_19330 fa11c881664801d88835517eee026f61 227 SUPERFAMILY SSF53697 40 216 1.05E-39 T 13-10-2018 RAM_42305 003b3b774981f7911a0dfb701a48ab6a 213 Pfam PF13460 NAD(P)H-binding 8 172 1.3E-15 T 13-10-2018 IPR016040 NAD(P)-binding domain RAM_42305 003b3b774981f7911a0dfb701a48ab6a 213 Gene3D G3DSA:3.40.50.720 3 212 2.2E-40 T 13-10-2018 RAM_42305 003b3b774981f7911a0dfb701a48ab6a 213 SUPERFAMILY SSF51735 2 210 9.9E-27 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_40230 8fbe2b6d327fc87d2f4237699a6f0fff 805 SUPERFAMILY SSF49785 2 167 2.55E-36 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_40230 8fbe2b6d327fc87d2f4237699a6f0fff 805 Pfam PF00703 Glycosyl hydrolases family 2 196 291 5.2E-11 T 13-10-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RAM_40230 8fbe2b6d327fc87d2f4237699a6f0fff 805 Gene3D G3DSA:2.60.40.10 175 291 9.7E-20 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_40230 8fbe2b6d327fc87d2f4237699a6f0fff 805 Gene3D G3DSA:2.60.40.10 687 794 4.1E-18 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_40230 8fbe2b6d327fc87d2f4237699a6f0fff 805 SUPERFAMILY SSF49303 193 291 2.88E-13 T 13-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily RAM_40230 8fbe2b6d327fc87d2f4237699a6f0fff 805 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 4 136 5.9E-13 T 13-10-2018 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_40230 8fbe2b6d327fc87d2f4237699a6f0fff 805 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 303 491 2.6E-8 T 13-10-2018 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 RAM_40230 8fbe2b6d327fc87d2f4237699a6f0fff 805 PRINTS PR00132 Glycosyl hydrolase family 2 signature 85 100 3.8E-5 T 13-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RAM_40230 8fbe2b6d327fc87d2f4237699a6f0fff 805 PRINTS PR00132 Glycosyl hydrolase family 2 signature 481 496 3.8E-5 T 13-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RAM_40230 8fbe2b6d327fc87d2f4237699a6f0fff 805 PRINTS PR00132 Glycosyl hydrolase family 2 signature 403 418 3.8E-5 T 13-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RAM_40230 8fbe2b6d327fc87d2f4237699a6f0fff 805 PRINTS PR00132 Glycosyl hydrolase family 2 signature 339 357 3.8E-5 T 13-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RAM_40230 8fbe2b6d327fc87d2f4237699a6f0fff 805 Gene3D G3DSA:3.20.20.80 299 597 6.7E-22 T 13-10-2018 RAM_40230 8fbe2b6d327fc87d2f4237699a6f0fff 805 Gene3D G3DSA:2.60.40.10 600 680 8.7E-12 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_40230 8fbe2b6d327fc87d2f4237699a6f0fff 805 Pfam PF16355 Domain of unknown function (DUF4982) 615 674 9.6E-9 T 13-10-2018 IPR032311 Domain of unknown function DUF4982 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_40230 8fbe2b6d327fc87d2f4237699a6f0fff 805 SUPERFAMILY SSF51445 302 592 4.02E-18 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_40230 8fbe2b6d327fc87d2f4237699a6f0fff 805 Gene3D G3DSA:2.60.120.260 1 166 1.2E-36 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_02085 cf32e2b4fd83946e64d5a4612fd1e880 277 SUPERFAMILY SSF53474 2 276 5.05E-79 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_02085 cf32e2b4fd83946e64d5a4612fd1e880 277 PRINTS PR00412 Epoxide hydrolase signature 101 114 1.1E-10 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_02085 cf32e2b4fd83946e64d5a4612fd1e880 277 PRINTS PR00412 Epoxide hydrolase signature 87 100 1.1E-10 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_02085 cf32e2b4fd83946e64d5a4612fd1e880 277 PRINTS PR00412 Epoxide hydrolase signature 252 274 1.1E-10 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_02085 cf32e2b4fd83946e64d5a4612fd1e880 277 PRINTS PR00412 Epoxide hydrolase signature 24 42 1.1E-10 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_02085 cf32e2b4fd83946e64d5a4612fd1e880 277 Pfam PF00561 alpha/beta hydrolase fold 18 262 4.8E-27 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_02085 cf32e2b4fd83946e64d5a4612fd1e880 277 PRINTS PR00111 Alpha/beta hydrolase fold signature 101 114 1.4E-7 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_02085 cf32e2b4fd83946e64d5a4612fd1e880 277 PRINTS PR00111 Alpha/beta hydrolase fold signature 87 100 1.4E-7 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_02085 cf32e2b4fd83946e64d5a4612fd1e880 277 PRINTS PR00111 Alpha/beta hydrolase fold signature 43 58 1.4E-7 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_02085 cf32e2b4fd83946e64d5a4612fd1e880 277 Gene3D G3DSA:3.40.50.1820 1 276 9.7E-94 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_09175 9f55d097fbb1fb30628e693d814d9203 234 Gene3D G3DSA:3.40.50.880 3 234 1.2E-68 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_09175 9f55d097fbb1fb30628e693d814d9203 234 SUPERFAMILY SSF52317 33 232 5.6E-35 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_09175 9f55d097fbb1fb30628e693d814d9203 234 Pfam PF07722 Peptidase C26 6 214 8.9E-59 T 13-10-2018 IPR011697 Peptidase C26 GO:0016787 Reactome: R-HSA-6798695 RAM_18015 ab5738379a8cabdb7e458c258ccd8519 359 SUPERFAMILY SSF47090 118 176 8.63E-9 T 13-10-2018 IPR036365 PGBD-like superfamily RAM_18015 ab5738379a8cabdb7e458c258ccd8519 359 Pfam PF01471 Putative peptidoglycan binding domain 120 169 3.1E-8 T 13-10-2018 IPR002477 Peptidoglycan binding-like RAM_18015 ab5738379a8cabdb7e458c258ccd8519 359 Gene3D G3DSA:1.10.101.10 114 178 5.5E-7 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 RAM_18015 ab5738379a8cabdb7e458c258ccd8519 359 Gene3D G3DSA:2.40.420.20 275 357 3.7E-11 T 13-10-2018 RAM_22290 5b1ad6104d58f4d029be5806e0e40de2 135 SUPERFAMILY SSF50475 11 129 4.58E-13 T 13-10-2018 RAM_22290 5b1ad6104d58f4d029be5806e0e40de2 135 Gene3D G3DSA:2.30.110.10 10 135 2.5E-22 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_22290 5b1ad6104d58f4d029be5806e0e40de2 135 Pfam PF12900 Pyridoxamine 5'-phosphate oxidase 12 94 6.7E-13 T 13-10-2018 IPR024747 Pyridoxamine 5'-phosphate oxidase-related RAM_47000 ff761ed12d8019f8ad1c80b4780ee4e7 391 SUPERFAMILY SSF49493 284 367 4.45E-18 T 13-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 RAM_47000 ff761ed12d8019f8ad1c80b4780ee4e7 391 SUPERFAMILY SSF49493 138 291 1.96E-20 T 13-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 RAM_47000 ff761ed12d8019f8ad1c80b4780ee4e7 391 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 10 374 5.1E-118 T 13-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 RAM_47000 ff761ed12d8019f8ad1c80b4780ee4e7 391 Pfam PF00226 DnaJ domain 10 72 4.3E-25 T 13-10-2018 IPR001623 DnaJ domain RAM_47000 ff761ed12d8019f8ad1c80b4780ee4e7 391 Gene3D G3DSA:2.60.260.20 233 277 6.6E-12 T 13-10-2018 RAM_47000 ff761ed12d8019f8ad1c80b4780ee4e7 391 PRINTS PR00625 DnaJ domain signature 12 30 9.2E-21 T 13-10-2018 IPR001623 DnaJ domain RAM_47000 ff761ed12d8019f8ad1c80b4780ee4e7 391 PRINTS PR00625 DnaJ domain signature 30 45 9.2E-21 T 13-10-2018 IPR001623 DnaJ domain RAM_47000 ff761ed12d8019f8ad1c80b4780ee4e7 391 PRINTS PR00625 DnaJ domain signature 47 67 9.2E-21 T 13-10-2018 IPR001623 DnaJ domain RAM_47000 ff761ed12d8019f8ad1c80b4780ee4e7 391 PRINTS PR00625 DnaJ domain signature 67 86 9.2E-21 T 13-10-2018 IPR001623 DnaJ domain RAM_47000 ff761ed12d8019f8ad1c80b4780ee4e7 391 Gene3D G3DSA:2.60.260.20 279 381 3.9E-26 T 13-10-2018 RAM_47000 ff761ed12d8019f8ad1c80b4780ee4e7 391 Gene3D G3DSA:2.10.230.10 159 232 4.2E-21 T 13-10-2018 RAM_47000 ff761ed12d8019f8ad1c80b4780ee4e7 391 SUPERFAMILY SSF46565 9 107 1.44E-28 T 13-10-2018 IPR036869 Chaperone J-domain superfamily RAM_47000 ff761ed12d8019f8ad1c80b4780ee4e7 391 Pfam PF01556 DnaJ C terminal domain 145 357 1.9E-35 T 13-10-2018 IPR002939 Chaperone DnaJ, C-terminal RAM_47000 ff761ed12d8019f8ad1c80b4780ee4e7 391 Gene3D G3DSA:1.10.287.110 8 119 3.0E-28 T 13-10-2018 IPR036869 Chaperone J-domain superfamily RAM_47000 ff761ed12d8019f8ad1c80b4780ee4e7 391 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 7 387 35.866 T 13-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 RAM_47000 ff761ed12d8019f8ad1c80b4780ee4e7 391 SUPERFAMILY SSF57938 159 234 2.75E-19 T 13-10-2018 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily RAM_47000 ff761ed12d8019f8ad1c80b4780ee4e7 391 Pfam PF00684 DnaJ central domain 172 232 6.5E-13 T 13-10-2018 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 RAM_47000 ff761ed12d8019f8ad1c80b4780ee4e7 391 SMART SM00271 9 67 2.6E-26 T 13-10-2018 IPR001623 DnaJ domain RAM_24460 fe99dd0046bd312da504ba18b0e0dae5 372 SUPERFAMILY SSF48452 93 257 2.21E-32 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_24460 fe99dd0046bd312da504ba18b0e0dae5 372 SMART SM01043 98 242 2.1E-42 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_24460 fe99dd0046bd312da504ba18b0e0dae5 372 Gene3D G3DSA:1.10.10.10 1 94 1.0E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_24460 fe99dd0046bd312da504ba18b0e0dae5 372 Pfam PF03704 Bacterial transcriptional activator domain 98 241 9.1E-37 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_24460 fe99dd0046bd312da504ba18b0e0dae5 372 SUPERFAMILY SSF48295 270 332 9.94E-8 T 13-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 RAM_24460 fe99dd0046bd312da504ba18b0e0dae5 372 Gene3D G3DSA:1.25.40.10 96 265 2.3E-44 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_24460 fe99dd0046bd312da504ba18b0e0dae5 372 SUPERFAMILY SSF46894 2 91 1.59E-10 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_25745 9763fc37aa16e3ce36166e78f4a762eb 804 Gene3D G3DSA:1.25.40.10 713 804 1.1E-16 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_25745 9763fc37aa16e3ce36166e78f4a762eb 804 SUPERFAMILY SSF48452 553 670 2.85E-21 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_25745 9763fc37aa16e3ce36166e78f4a762eb 804 Pfam PF13374 Tetratricopeptide repeat 683 723 2.1E-10 T 13-10-2018 RAM_25745 9763fc37aa16e3ce36166e78f4a762eb 804 Pfam PF13424 Tetratricopeptide repeat 725 798 3.7E-17 T 13-10-2018 RAM_25745 9763fc37aa16e3ce36166e78f4a762eb 804 Pfam PF13424 Tetratricopeptide repeat 435 505 2.0E-14 T 13-10-2018 RAM_25745 9763fc37aa16e3ce36166e78f4a762eb 804 Pfam PF13424 Tetratricopeptide repeat 599 673 4.3E-18 T 13-10-2018 RAM_25745 9763fc37aa16e3ce36166e78f4a762eb 804 Pfam PF13424 Tetratricopeptide repeat 515 589 2.9E-17 T 13-10-2018 RAM_25745 9763fc37aa16e3ce36166e78f4a762eb 804 SUPERFAMILY SSF48452 678 799 8.28E-21 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_25745 9763fc37aa16e3ce36166e78f4a762eb 804 Gene3D G3DSA:1.25.40.10 407 570 7.1E-54 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_25745 9763fc37aa16e3ce36166e78f4a762eb 804 SUPERFAMILY SSF52540 67 257 2.19E-16 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_25745 9763fc37aa16e3ce36166e78f4a762eb 804 Gene3D G3DSA:1.25.40.10 571 712 3.9E-49 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_25745 9763fc37aa16e3ce36166e78f4a762eb 804 SMART SM00028 558 591 92.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_25745 9763fc37aa16e3ce36166e78f4a762eb 804 SMART SM00028 684 717 400.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_25745 9763fc37aa16e3ce36166e78f4a762eb 804 SMART SM00028 474 507 85.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_25745 9763fc37aa16e3ce36166e78f4a762eb 804 SMART SM00028 726 759 36.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_25745 9763fc37aa16e3ce36166e78f4a762eb 804 SMART SM00028 768 801 68.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_25745 9763fc37aa16e3ce36166e78f4a762eb 804 SMART SM00028 642 675 45.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_25745 9763fc37aa16e3ce36166e78f4a762eb 804 SMART SM00028 516 549 0.076 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_25745 9763fc37aa16e3ce36166e78f4a762eb 804 SMART SM00028 600 633 48.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_25745 9763fc37aa16e3ce36166e78f4a762eb 804 SUPERFAMILY SSF48452 469 586 7.59E-23 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_25745 9763fc37aa16e3ce36166e78f4a762eb 804 Gene3D G3DSA:3.40.50.300 34 194 3.1E-17 T 13-10-2018 RAM_25745 9763fc37aa16e3ce36166e78f4a762eb 804 PRINTS PR00381 Kinesin light chain signature 633 654 2.8E-6 T 13-10-2018 IPR002151 Kinesin light chain GO:0003777|GO:0005871 Reactome: R-HSA-2132295|Reactome: R-HSA-5625970|Reactome: R-HSA-6811434|Reactome: R-HSA-983189 RAM_25745 9763fc37aa16e3ce36166e78f4a762eb 804 PRINTS PR00381 Kinesin light chain signature 467 486 2.8E-6 T 13-10-2018 IPR002151 Kinesin light chain GO:0003777|GO:0005871 Reactome: R-HSA-2132295|Reactome: R-HSA-5625970|Reactome: R-HSA-6811434|Reactome: R-HSA-983189 RAM_25745 9763fc37aa16e3ce36166e78f4a762eb 804 PRINTS PR00381 Kinesin light chain signature 554 571 2.8E-6 T 13-10-2018 IPR002151 Kinesin light chain GO:0003777|GO:0005871 Reactome: R-HSA-2132295|Reactome: R-HSA-5625970|Reactome: R-HSA-6811434|Reactome: R-HSA-983189 RAM_25745 9763fc37aa16e3ce36166e78f4a762eb 804 PRINTS PR00381 Kinesin light chain signature 489 507 2.8E-6 T 13-10-2018 IPR002151 Kinesin light chain GO:0003777|GO:0005871 Reactome: R-HSA-2132295|Reactome: R-HSA-5625970|Reactome: R-HSA-6811434|Reactome: R-HSA-983189 RAM_24260 077d360739df8d71b42c36ea7ac5dad7 453 SUPERFAMILY SSF52151 86 390 1.73E-58 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RAM_24260 077d360739df8d71b42c36ea7ac5dad7 453 Pfam PF00698 Acyl transferase domain 87 377 1.5E-40 T 13-10-2018 IPR014043 Acyl transferase RAM_24260 077d360739df8d71b42c36ea7ac5dad7 453 Gene3D G3DSA:3.40.366.10 85 409 3.2E-116 T 13-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 RAM_24260 077d360739df8d71b42c36ea7ac5dad7 453 SUPERFAMILY SSF55048 237 291 6.67E-7 T 13-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding RAM_24260 077d360739df8d71b42c36ea7ac5dad7 453 Gene3D G3DSA:3.30.70.3290 11 434 3.2E-116 T 13-10-2018 RAM_24260 077d360739df8d71b42c36ea7ac5dad7 453 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 89 408 8.4E-83 T 13-10-2018 IPR020801 Polyketide synthase, acyl transferase domain RAM_24260 077d360739df8d71b42c36ea7ac5dad7 453 Gene3D G3DSA:3.30.70.250 238 300 3.2E-116 T 13-10-2018 RAM_29185 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 SUPERFAMILY SSF51445 815 876 7.02E-6 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_29185 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 Gene3D G3DSA:2.60.120.260 55 275 1.2E-87 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_29185 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 Pfam PF16353 Domain of unknown function(DUF4981) 891 982 4.4E-24 T 13-10-2018 IPR032312 Beta-galactosidase, domain 4 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_29185 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 Pfam PF00703 Glycosyl hydrolases family 2 276 393 1.1E-12 T 13-10-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RAM_29185 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 398 623 1.1E-83 T 13-10-2018 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 RAM_29185 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 825 879 6.0E-11 T 13-10-2018 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 RAM_29185 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 SUPERFAMILY SSF49303 276 393 3.53E-20 T 13-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily RAM_29185 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 ProSitePatterns PS00608 Glycosyl hydrolases family 2 acid/base catalyst. 506 520 - T 13-10-2018 IPR023232 Glycoside hydrolase, family 2, active site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RAM_29185 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 SMART SM01038 1010 1283 7.8E-122 T 13-10-2018 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_29185 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 SMART SM00560 672 801 2.3E-25 T 13-10-2018 IPR006558 LamG-like jellyroll fold RAM_29185 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 SUPERFAMILY SSF49899 648 805 9.26E-21 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily RAM_29185 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 Gene3D G3DSA:3.20.20.80 397 643 7.7E-91 T 13-10-2018 RAM_29185 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 Gene3D G3DSA:2.60.40.10 276 393 7.7E-25 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_29185 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 ProSitePatterns PS00719 Glycosyl hydrolases family 2 signature 1. 445 470 - T 13-10-2018 IPR023230 Glycoside hydrolase, family 2, conserved site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RAM_29185 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 SUPERFAMILY SSF49785 58 274 3.77E-61 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_29185 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 Gene3D G3DSA:2.60.120.200 644 806 6.6E-18 T 13-10-2018 RAM_29185 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 SUPERFAMILY SSF74650 998 1285 2.3E-84 T 13-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 RAM_29185 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 SUPERFAMILY SSF49303 872 983 1.2E-25 T 13-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily RAM_29185 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 PRINTS PR00132 Glycosyl hydrolase family 2 signature 404 418 6.2E-33 T 13-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RAM_29185 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 PRINTS PR00132 Glycosyl hydrolase family 2 signature 435 453 6.2E-33 T 13-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RAM_29185 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 PRINTS PR00132 Glycosyl hydrolase family 2 signature 578 593 6.2E-33 T 13-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RAM_29185 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 PRINTS PR00132 Glycosyl hydrolase family 2 signature 202 217 6.2E-33 T 13-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RAM_29185 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 PRINTS PR00132 Glycosyl hydrolase family 2 signature 506 521 6.2E-33 T 13-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RAM_29185 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 Pfam PF02929 Beta galactosidase small chain 1012 1282 1.4E-75 T 13-10-2018 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_29185 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 658 803 3.0E-19 T 13-10-2018 RAM_29185 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 Gene3D G3DSA:2.70.98.10 995 1283 7.3E-89 T 13-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 RAM_29185 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 Gene3D G3DSA:3.20.20.80 814 875 3.3E-10 T 13-10-2018 RAM_29185 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 Gene3D G3DSA:2.60.40.10 876 983 1.1E-27 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_29185 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 100 274 8.1E-39 T 13-10-2018 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_29185 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 SUPERFAMILY SSF51445 399 632 1.38E-73 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_42270 6c4fe4c4018c98d28807de5af6a19838 130 SUPERFAMILY SSF55811 6 109 4.06E-19 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RAM_42270 6c4fe4c4018c98d28807de5af6a19838 130 Gene3D G3DSA:3.90.79.10 4 127 2.7E-19 T 13-10-2018 RAM_42270 6c4fe4c4018c98d28807de5af6a19838 130 Pfam PF00293 NUDIX domain 13 108 1.4E-9 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RAM_42270 6c4fe4c4018c98d28807de5af6a19838 130 ProSitePatterns PS00893 Nudix box signature. 31 52 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RAM_33200 6ed59d98d460285f57b9df041deaf121 909 SUPERFAMILY SSF46894 842 900 2.28E-15 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_33200 6ed59d98d460285f57b9df041deaf121 909 Pfam PF00196 Bacterial regulatory proteins, luxR family 848 899 1.6E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_33200 6ed59d98d460285f57b9df041deaf121 909 Pfam PF13191 AAA ATPase domain 5 157 1.1E-16 T 13-10-2018 RAM_33200 6ed59d98d460285f57b9df041deaf121 909 SMART SM00421 846 903 1.5E-17 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_33200 6ed59d98d460285f57b9df041deaf121 909 SUPERFAMILY SSF52540 4 230 1.1E-10 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_33200 6ed59d98d460285f57b9df041deaf121 909 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 879 891 2.7E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_33200 6ed59d98d460285f57b9df041deaf121 909 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 849 863 2.7E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_33200 6ed59d98d460285f57b9df041deaf121 909 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 863 879 2.7E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_33200 6ed59d98d460285f57b9df041deaf121 909 Gene3D G3DSA:1.10.10.10 821 903 2.2E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_33200 6ed59d98d460285f57b9df041deaf121 909 Gene3D G3DSA:1.25.40.10 555 820 3.9E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_14430 cd88cf97e55b65783ce7615d53b0da73 174 ProDom PD016028 PROTEASE METALLOPROTEASE EXTRACELLULAR NEUTRAL SMALL METAL-BINDING ZINC HYDROLASE SNAPALYSIN ZYMOGEN 37 160 1.0E-30 T 13-10-2018 IPR000013 Peptidase M7, snapalysin GO:0004222|GO:0005576|GO:0006508|GO:0008270 RAM_14430 cd88cf97e55b65783ce7615d53b0da73 174 PRINTS PR00787 Streptomyces extracellular neutral proteinase (M7) family signature 93 117 5.9E-27 T 13-10-2018 IPR000013 Peptidase M7, snapalysin GO:0004222|GO:0005576|GO:0006508|GO:0008270 RAM_14430 cd88cf97e55b65783ce7615d53b0da73 174 PRINTS PR00787 Streptomyces extracellular neutral proteinase (M7) family signature 118 142 5.9E-27 T 13-10-2018 IPR000013 Peptidase M7, snapalysin GO:0004222|GO:0005576|GO:0006508|GO:0008270 RAM_14430 cd88cf97e55b65783ce7615d53b0da73 174 PRINTS PR00787 Streptomyces extracellular neutral proteinase (M7) family signature 35 61 5.9E-27 T 13-10-2018 IPR000013 Peptidase M7, snapalysin GO:0004222|GO:0005576|GO:0006508|GO:0008270 RAM_14430 cd88cf97e55b65783ce7615d53b0da73 174 PRINTS PR00787 Streptomyces extracellular neutral proteinase (M7) family signature 145 159 5.9E-27 T 13-10-2018 IPR000013 Peptidase M7, snapalysin GO:0004222|GO:0005576|GO:0006508|GO:0008270 RAM_14430 cd88cf97e55b65783ce7615d53b0da73 174 PIRSF PIRSF016573 7 173 1.4E-49 T 13-10-2018 IPR000013 Peptidase M7, snapalysin GO:0004222|GO:0005576|GO:0006508|GO:0008270 RAM_14430 cd88cf97e55b65783ce7615d53b0da73 174 Gene3D G3DSA:3.40.390.10 28 160 9.0E-42 T 13-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 RAM_14430 cd88cf97e55b65783ce7615d53b0da73 174 SUPERFAMILY SSF55486 30 157 2.08E-24 T 13-10-2018 RAM_14430 cd88cf97e55b65783ce7615d53b0da73 174 Pfam PF02031 Streptomyces extracellular neutral proteinase (M7) family 29 160 3.5E-42 T 13-10-2018 IPR000013 Peptidase M7, snapalysin GO:0004222|GO:0005576|GO:0006508|GO:0008270 RAM_41650 558ac4627b58121bc62f08cdcf5ec1e7 456 Gene3D G3DSA:3.40.50.1100 41 154 8.0E-119 T 13-10-2018 RAM_41650 558ac4627b58121bc62f08cdcf5ec1e7 456 Gene3D G3DSA:3.40.50.1100 9 304 8.0E-119 T 13-10-2018 RAM_41650 558ac4627b58121bc62f08cdcf5ec1e7 456 TIGRFAM TIGR01137 cysta_beta: cystathionine beta-synthase 4 454 3.6E-199 T 13-10-2018 IPR005857 Cystathionine beta-synthase GO:0004122|GO:0005737|GO:0019343 KEGG: 00260+4.2.1.22|KEGG: 00270+4.2.1.22|MetaCyc: PWY-801 RAM_41650 558ac4627b58121bc62f08cdcf5ec1e7 456 Gene3D G3DSA:3.10.580.10 319 456 1.8E-16 T 13-10-2018 RAM_41650 558ac4627b58121bc62f08cdcf5ec1e7 456 SMART SM00116 409 454 0.35 T 13-10-2018 IPR000644 CBS domain RAM_41650 558ac4627b58121bc62f08cdcf5ec1e7 456 SMART SM00116 339 392 0.029 T 13-10-2018 IPR000644 CBS domain RAM_41650 558ac4627b58121bc62f08cdcf5ec1e7 456 SUPERFAMILY SSF53686 2 317 6.94E-96 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RAM_41650 558ac4627b58121bc62f08cdcf5ec1e7 456 Pfam PF00571 CBS domain 406 454 7.0E-4 T 13-10-2018 IPR000644 CBS domain RAM_41650 558ac4627b58121bc62f08cdcf5ec1e7 456 Pfam PF00571 CBS domain 344 391 1.2E-4 T 13-10-2018 IPR000644 CBS domain RAM_41650 558ac4627b58121bc62f08cdcf5ec1e7 456 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 8 296 4.8E-68 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RAM_41650 558ac4627b58121bc62f08cdcf5ec1e7 456 SUPERFAMILY SSF54631 325 455 3.16E-15 T 13-10-2018 RAM_41650 558ac4627b58121bc62f08cdcf5ec1e7 456 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 33 51 - T 13-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 RAM_15700 c3c46807ea94367d8e93dc3057b9db2d 440 Pfam PF13378 Enolase C-terminal domain-like 204 417 1.7E-61 T 13-10-2018 IPR029065 Enolase C-terminal domain-like RAM_15700 c3c46807ea94367d8e93dc3057b9db2d 440 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 37 138 8.8E-11 T 13-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain RAM_15700 c3c46807ea94367d8e93dc3057b9db2d 440 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 247 278 - T 13-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 RAM_15700 c3c46807ea94367d8e93dc3057b9db2d 440 SUPERFAMILY SSF51604 186 432 8.52E-73 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RAM_15700 c3c46807ea94367d8e93dc3057b9db2d 440 SUPERFAMILY SSF54826 8 141 1.77E-34 T 13-10-2018 RAM_15700 c3c46807ea94367d8e93dc3057b9db2d 440 Gene3D G3DSA:3.20.20.120 134 437 4.0E-111 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RAM_15700 c3c46807ea94367d8e93dc3057b9db2d 440 Gene3D G3DSA:3.30.390.10 6 133 1.9E-48 T 13-10-2018 IPR029017 Enolase-like, N-terminal RAM_15700 c3c46807ea94367d8e93dc3057b9db2d 440 SMART SM00922 201 297 9.3E-30 T 13-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal RAM_19385 a7f548055c21362091469fea36a701e4 292 PRINTS PR00111 Alpha/beta hydrolase fold signature 55 70 3.7E-5 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_19385 a7f548055c21362091469fea36a701e4 292 PRINTS PR00111 Alpha/beta hydrolase fold signature 117 130 3.7E-5 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_19385 a7f548055c21362091469fea36a701e4 292 PRINTS PR00111 Alpha/beta hydrolase fold signature 103 116 3.7E-5 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_19385 a7f548055c21362091469fea36a701e4 292 Pfam PF00561 alpha/beta hydrolase fold 31 139 3.0E-20 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_19385 a7f548055c21362091469fea36a701e4 292 SUPERFAMILY SSF53474 6 292 2.45E-59 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_19385 a7f548055c21362091469fea36a701e4 292 PRINTS PR00412 Epoxide hydrolase signature 103 116 2.6E-8 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_19385 a7f548055c21362091469fea36a701e4 292 PRINTS PR00412 Epoxide hydrolase signature 36 54 2.6E-8 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_19385 a7f548055c21362091469fea36a701e4 292 PRINTS PR00412 Epoxide hydrolase signature 267 289 2.6E-8 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_19385 a7f548055c21362091469fea36a701e4 292 Gene3D G3DSA:3.40.50.1820 4 292 2.7E-71 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_03965 50f91cf70b6bf79c88b49c334670ccd6 235 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 21 218 2.6E-29 T 13-10-2018 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type RAM_03965 50f91cf70b6bf79c88b49c334670ccd6 235 Pfam PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain 15 150 3.9E-26 T 13-10-2018 IPR024344 Mycothiol-dependent maleylpyruvate isomerase, metal-binding domain GO:0046872 RAM_03965 50f91cf70b6bf79c88b49c334670ccd6 235 SUPERFAMILY SSF55718 174 234 1.65E-8 T 13-10-2018 IPR036527 SCP2 sterol-binding domain superfamily RAM_03965 50f91cf70b6bf79c88b49c334670ccd6 235 SUPERFAMILY SSF109854 8 157 8.42E-39 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_03965 50f91cf70b6bf79c88b49c334670ccd6 235 Gene3D G3DSA:1.20.120.450 2 156 1.3E-43 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_40040 54b98a0a6a805f33a74334270ce49ab1 441 Gene3D G3DSA:3.40.50.720 14 347 2.6E-144 T 13-10-2018 RAM_40040 54b98a0a6a805f33a74334270ce49ab1 441 Gene3D G3DSA:3.30.70.260 356 427 2.6E-144 T 13-10-2018 RAM_40040 54b98a0a6a805f33a74334270ce49ab1 441 Gene3D G3DSA:3.30.360.10 144 355 2.6E-144 T 13-10-2018 RAM_40040 54b98a0a6a805f33a74334270ce49ab1 441 SUPERFAMILY SSF55021 358 431 1.4E-12 T 13-10-2018 RAM_40040 54b98a0a6a805f33a74334270ce49ab1 441 Pfam PF01842 ACT domain 363 424 2.3E-12 T 13-10-2018 IPR002912 ACT domain RAM_40040 54b98a0a6a805f33a74334270ce49ab1 441 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 191 213 - T 13-10-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 RAM_40040 54b98a0a6a805f33a74334270ce49ab1 441 SUPERFAMILY SSF51735 11 166 1.84E-36 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_40040 54b98a0a6a805f33a74334270ce49ab1 441 PIRSF PIRSF000098 11 439 5.8E-155 T 13-10-2018 IPR016204 Homoserine dehydrogenase GO:0004412|GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 RAM_40040 54b98a0a6a805f33a74334270ce49ab1 441 SUPERFAMILY SSF55347 145 315 6.34E-50 T 13-10-2018 RAM_40040 54b98a0a6a805f33a74334270ce49ab1 441 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 20 137 3.1E-25 T 13-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 RAM_40040 54b98a0a6a805f33a74334270ce49ab1 441 Pfam PF00742 Homoserine dehydrogenase 145 328 7.6E-65 T 13-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 RAM_44170 daa0658ad3d0c588b7472bb3a4542cf6 148 Gene3D G3DSA:1.10.10.10 9 147 8.3E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_44170 daa0658ad3d0c588b7472bb3a4542cf6 148 Pfam PF12802 MarR family 35 94 4.5E-9 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_44170 daa0658ad3d0c588b7472bb3a4542cf6 148 SUPERFAMILY SSF46785 24 142 7.44E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_44170 daa0658ad3d0c588b7472bb3a4542cf6 148 SMART SM00347 29 132 3.8E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_46815 5bd720c4c3bb4129236bbfaf6662f6cb 176 SUPERFAMILY SSF46785 13 156 9.03E-28 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_46815 5bd720c4c3bb4129236bbfaf6662f6cb 176 Gene3D G3DSA:1.10.10.10 3 152 1.0E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_46815 5bd720c4c3bb4129236bbfaf6662f6cb 176 Pfam PF01047 MarR family 48 103 4.1E-14 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_46815 5bd720c4c3bb4129236bbfaf6662f6cb 176 PRINTS PR00598 Bacterial regulatory protein MarR family signature 80 95 1.6E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_46815 5bd720c4c3bb4129236bbfaf6662f6cb 176 PRINTS PR00598 Bacterial regulatory protein MarR family signature 63 79 1.6E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_46815 5bd720c4c3bb4129236bbfaf6662f6cb 176 PRINTS PR00598 Bacterial regulatory protein MarR family signature 99 115 1.6E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_46815 5bd720c4c3bb4129236bbfaf6662f6cb 176 PRINTS PR00598 Bacterial regulatory protein MarR family signature 129 149 1.6E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_46815 5bd720c4c3bb4129236bbfaf6662f6cb 176 ProSitePatterns PS01117 MarR-type HTH domain signature. 78 112 - T 13-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site RAM_46815 5bd720c4c3bb4129236bbfaf6662f6cb 176 SMART SM00347 39 139 5.3E-21 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_25370 5170055f150283e8e884bc5d45792d4d 961 SUPERFAMILY SSF53383 17 439 1.27E-94 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_25370 5170055f150283e8e884bc5d45792d4d 961 Pfam PF02347 Glycine cleavage system P-protein 16 443 1.9E-170 T 13-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 RAM_25370 5170055f150283e8e884bc5d45792d4d 961 Pfam PF02347 Glycine cleavage system P-protein 454 734 2.4E-8 T 13-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 RAM_25370 5170055f150283e8e884bc5d45792d4d 961 Gene3D G3DSA:3.90.1150.10 767 905 5.7E-37 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_25370 5170055f150283e8e884bc5d45792d4d 961 Gene3D G3DSA:3.40.640.10 96 359 1.5E-103 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_25370 5170055f150283e8e884bc5d45792d4d 961 Gene3D G3DSA:3.40.640.10 525 746 2.0E-55 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_25370 5170055f150283e8e884bc5d45792d4d 961 SUPERFAMILY SSF53383 457 953 1.15E-90 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_25370 5170055f150283e8e884bc5d45792d4d 961 Hamap MF_00711 Glycine dehydrogenase (decarboxylating) [gcvP]. 8 957 24.882 T 13-10-2018 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 RAM_25370 5170055f150283e8e884bc5d45792d4d 961 TIGRFAM TIGR00461 gcvP: glycine dehydrogenase 17 951 0.0 T 13-10-2018 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 RAM_41255 64b9e5240f6127f9b08f97e98497e92e 641 SUPERFAMILY SSF52540 18 236 3.81E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_41255 64b9e5240f6127f9b08f97e98497e92e 641 SUPERFAMILY SSF54980 430 544 6.71E-27 T 13-10-2018 IPR035647 EF-G domain III/V-like RAM_41255 64b9e5240f6127f9b08f97e98497e92e 641 SUPERFAMILY SSF54980 333 419 1.01E-10 T 13-10-2018 IPR035647 EF-G domain III/V-like RAM_41255 64b9e5240f6127f9b08f97e98497e92e 641 Gene3D G3DSA:3.30.70.240 421 513 1.7E-113 T 13-10-2018 RAM_41255 64b9e5240f6127f9b08f97e98497e92e 641 Gene3D G3DSA:2.40.50.250 514 629 1.7E-113 T 13-10-2018 RAM_41255 64b9e5240f6127f9b08f97e98497e92e 641 Gene3D G3DSA:3.30.70.870 338 621 1.7E-113 T 13-10-2018 RAM_41255 64b9e5240f6127f9b08f97e98497e92e 641 Pfam PF00679 Elongation factor G C-terminus 428 512 5.2E-20 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like RAM_41255 64b9e5240f6127f9b08f97e98497e92e 641 SUPERFAMILY SSF50447 183 331 1.02E-30 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RAM_41255 64b9e5240f6127f9b08f97e98497e92e 641 Gene3D G3DSA:2.40.30.10 230 330 3.5E-31 T 13-10-2018 RAM_41255 64b9e5240f6127f9b08f97e98497e92e 641 Gene3D G3DSA:3.40.50.300 19 229 7.4E-57 T 13-10-2018 RAM_41255 64b9e5240f6127f9b08f97e98497e92e 641 Pfam PF00009 Elongation factor Tu GTP binding domain 21 226 1.0E-52 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_41255 64b9e5240f6127f9b08f97e98497e92e 641 Pfam PF03144 Elongation factor Tu domain 2 250 320 2.0E-11 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 RAM_41255 64b9e5240f6127f9b08f97e98497e92e 641 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 21 629 7.0E-271 T 13-10-2018 IPR006298 GTP-binding protein TypA GO:0005525 RAM_41255 64b9e5240f6127f9b08f97e98497e92e 641 PRINTS PR00315 GTP-binding elongation factor signature 23 36 1.0E-15 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_41255 64b9e5240f6127f9b08f97e98497e92e 641 PRINTS PR00315 GTP-binding elongation factor signature 107 118 1.0E-15 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_41255 64b9e5240f6127f9b08f97e98497e92e 641 PRINTS PR00315 GTP-binding elongation factor signature 91 101 1.0E-15 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_41255 64b9e5240f6127f9b08f97e98497e92e 641 PRINTS PR00315 GTP-binding elongation factor signature 67 75 1.0E-15 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_41255 64b9e5240f6127f9b08f97e98497e92e 641 PRINTS PR00315 GTP-binding elongation factor signature 143 152 1.0E-15 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_41255 64b9e5240f6127f9b08f97e98497e92e 641 SMART SM00838 427 515 0.0074 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like RAM_41255 64b9e5240f6127f9b08f97e98497e92e 641 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 22 167 3.1E-23 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 RAM_06665 540a861a38835cddb361b2aec1adf196 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 142 161 2.0E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_06665 540a861a38835cddb361b2aec1adf196 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 69 80 2.0E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_06665 540a861a38835cddb361b2aec1adf196 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 2.0E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_06665 540a861a38835cddb361b2aec1adf196 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 163 180 2.0E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_06665 540a861a38835cddb361b2aec1adf196 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 116 132 2.0E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_06665 540a861a38835cddb361b2aec1adf196 234 Gene3D G3DSA:3.40.50.720 1 220 3.5E-50 T 13-10-2018 RAM_06665 540a861a38835cddb361b2aec1adf196 234 SUPERFAMILY SSF51735 2 209 3.4E-50 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_06665 540a861a38835cddb361b2aec1adf196 234 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 122 130 2.0E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_06665 540a861a38835cddb361b2aec1adf196 234 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 142 161 2.0E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_06665 540a861a38835cddb361b2aec1adf196 234 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 69 80 2.0E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_06665 540a861a38835cddb361b2aec1adf196 234 Pfam PF00106 short chain dehydrogenase 7 183 7.6E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_06665 540a861a38835cddb361b2aec1adf196 234 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 129 157 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_03135 9a41ce7690e09d87a7045cc56fd915d4 342 SUPERFAMILY SSF51735 18 165 1.3E-37 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_03135 9a41ce7690e09d87a7045cc56fd915d4 342 Gene3D G3DSA:3.40.50.720 14 130 2.4E-26 T 13-10-2018 RAM_03135 9a41ce7690e09d87a7045cc56fd915d4 342 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 20 130 6.5E-22 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 RAM_03135 9a41ce7690e09d87a7045cc56fd915d4 342 Gene3D G3DSA:3.30.360.10 133 338 5.4E-39 T 13-10-2018 RAM_03135 9a41ce7690e09d87a7045cc56fd915d4 342 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 162 212 1.8E-5 T 13-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 RAM_03135 9a41ce7690e09d87a7045cc56fd915d4 342 SUPERFAMILY SSF55347 140 308 2.29E-20 T 13-10-2018 RAM_36095 9ae7ba6d220193d55eeb703bc166e54c 208 TIGRFAM TIGR00257 IMPACT_YIGZ: uncharacterized protein, YigZ family 3 189 5.4E-55 T 13-10-2018 IPR015796 Impact family, bacterial/archaeal RAM_36095 9ae7ba6d220193d55eeb703bc166e54c 208 Pfam PF09186 Domain of unknown function (DUF1949) 133 187 2.1E-10 T 13-10-2018 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal RAM_36095 9ae7ba6d220193d55eeb703bc166e54c 208 SUPERFAMILY SSF54980 131 190 2.16E-7 T 13-10-2018 IPR035647 EF-G domain III/V-like RAM_36095 9ae7ba6d220193d55eeb703bc166e54c 208 Gene3D G3DSA:3.30.230.30 1 125 1.6E-49 T 13-10-2018 IPR036956 Impact, N-terminal domain superfamily RAM_36095 9ae7ba6d220193d55eeb703bc166e54c 208 ProSitePatterns PS00910 Uncharacterized protein family UPF0029 signature. 72 101 - T 13-10-2018 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site RAM_36095 9ae7ba6d220193d55eeb703bc166e54c 208 Pfam PF01205 Uncharacterized protein family UPF0029 12 116 8.5E-28 T 13-10-2018 IPR001498 Impact, N-terminal RAM_36095 9ae7ba6d220193d55eeb703bc166e54c 208 SUPERFAMILY SSF54211 4 124 5.69E-39 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RAM_35965 2bf02c6477bd14b3735131c387a65d25 465 Gene3D G3DSA:3.40.640.10 101 457 1.6E-110 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_35965 2bf02c6477bd14b3735131c387a65d25 465 Pfam PF00155 Aminotransferase class I and II 124 406 3.3E-20 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RAM_35965 2bf02c6477bd14b3735131c387a65d25 465 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 45 59 9.6E-6 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_35965 2bf02c6477bd14b3735131c387a65d25 465 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 59 75 9.6E-6 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_35965 2bf02c6477bd14b3735131c387a65d25 465 SUPERFAMILY SSF46785 15 89 2.55E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_35965 2bf02c6477bd14b3735131c387a65d25 465 SUPERFAMILY SSF53383 98 464 3.58E-80 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_35965 2bf02c6477bd14b3735131c387a65d25 465 SMART SM00345 26 85 4.9E-12 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_35965 2bf02c6477bd14b3735131c387a65d25 465 Gene3D G3DSA:1.10.10.10 9 86 7.5E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_35965 2bf02c6477bd14b3735131c387a65d25 465 Pfam PF00392 Bacterial regulatory proteins, gntR family 23 85 3.3E-13 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_20350 3f3e0794d2d9f746c756749e66bfe3a2 447 Pfam PF01341 Glycosyl hydrolases family 6 38 295 1.1E-67 T 13-10-2018 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 RAM_20350 3f3e0794d2d9f746c756749e66bfe3a2 447 PRINTS PR00733 Glycosyl hydrolase family 6 signature 176 189 3.0E-45 T 13-10-2018 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 RAM_20350 3f3e0794d2d9f746c756749e66bfe3a2 447 PRINTS PR00733 Glycosyl hydrolase family 6 signature 119 134 3.0E-45 T 13-10-2018 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 RAM_20350 3f3e0794d2d9f746c756749e66bfe3a2 447 PRINTS PR00733 Glycosyl hydrolase family 6 signature 278 292 3.0E-45 T 13-10-2018 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 RAM_20350 3f3e0794d2d9f746c756749e66bfe3a2 447 PRINTS PR00733 Glycosyl hydrolase family 6 signature 207 217 3.0E-45 T 13-10-2018 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 RAM_20350 3f3e0794d2d9f746c756749e66bfe3a2 447 PRINTS PR00733 Glycosyl hydrolase family 6 signature 91 104 3.0E-45 T 13-10-2018 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 RAM_20350 3f3e0794d2d9f746c756749e66bfe3a2 447 PRINTS PR00733 Glycosyl hydrolase family 6 signature 239 252 3.0E-45 T 13-10-2018 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 RAM_20350 3f3e0794d2d9f746c756749e66bfe3a2 447 PRINTS PR00733 Glycosyl hydrolase family 6 signature 254 274 3.0E-45 T 13-10-2018 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 RAM_20350 3f3e0794d2d9f746c756749e66bfe3a2 447 PRINTS PR00733 Glycosyl hydrolase family 6 signature 48 67 3.0E-45 T 13-10-2018 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 RAM_20350 3f3e0794d2d9f746c756749e66bfe3a2 447 SMART SM00637 348 446 6.5E-28 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_20350 3f3e0794d2d9f746c756749e66bfe3a2 447 ProSitePatterns PS00655 Glycosyl hydrolases family 6 signature 1. 96 112 - T 13-10-2018 IPR001524 Glycoside hydrolase, family 6, conserved site GO:0004553|GO:0005975 RAM_20350 3f3e0794d2d9f746c756749e66bfe3a2 447 Gene3D G3DSA:2.60.40.290 343 447 5.5E-28 T 13-10-2018 IPR012291 CBM2, carbohydrate-binding domain superfamily GO:0004553|GO:0030247 RAM_20350 3f3e0794d2d9f746c756749e66bfe3a2 447 PIRSF PIRSF001100 309 361 140.0 T 13-10-2018 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 RAM_20350 3f3e0794d2d9f746c756749e66bfe3a2 447 PIRSF PIRSF001100 326 447 840.0 T 13-10-2018 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 RAM_20350 3f3e0794d2d9f746c756749e66bfe3a2 447 PIRSF PIRSF001100 3 316 1.0E-85 T 13-10-2018 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 RAM_20350 3f3e0794d2d9f746c756749e66bfe3a2 447 SUPERFAMILY SSF51989 30 311 9.68E-89 T 13-10-2018 IPR036434 1, 4-beta cellobiohydrolase superfamily GO:0004553|GO:0030245 RAM_20350 3f3e0794d2d9f746c756749e66bfe3a2 447 ProSitePatterns PS00561 CBM2a (carbohydrate-binding type-2) domain signature. 411 424 - T 13-10-2018 IPR018366 Carbohydrate-binding type-2, conserved site GO:0004553|GO:0005975|GO:0030246 RAM_20350 3f3e0794d2d9f746c756749e66bfe3a2 447 Gene3D G3DSA:3.20.20.40 26 312 4.8E-108 T 13-10-2018 IPR036434 1, 4-beta cellobiohydrolase superfamily GO:0004553|GO:0030245 RAM_20350 3f3e0794d2d9f746c756749e66bfe3a2 447 SUPERFAMILY SSF49384 343 446 3.14E-24 T 13-10-2018 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily GO:0030246 RAM_20350 3f3e0794d2d9f746c756749e66bfe3a2 447 Pfam PF00553 Cellulose binding domain 348 446 1.2E-23 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_32090 254d30b0e798199663d1f00a9f73c042 514 Pfam PF01225 Mur ligase family, catalytic domain 41 116 5.5E-13 T 13-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 RAM_32090 254d30b0e798199663d1f00a9f73c042 514 Gene3D G3DSA:3.90.190.20 351 510 2.6E-57 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 RAM_32090 254d30b0e798199663d1f00a9f73c042 514 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 16 506 32.01 T 13-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 RAM_32090 254d30b0e798199663d1f00a9f73c042 514 SUPERFAMILY SSF53623 122 347 2.4E-64 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RAM_32090 254d30b0e798199663d1f00a9f73c042 514 Pfam PF02875 Mur ligase family, glutamate ligase domain 349 434 1.9E-21 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 RAM_32090 254d30b0e798199663d1f00a9f73c042 514 SUPERFAMILY SSF63418 36 120 8.89E-19 T 13-10-2018 IPR035911 MurE/MurF, N-terminal RAM_32090 254d30b0e798199663d1f00a9f73c042 514 Pfam PF08245 Mur ligase middle domain 131 329 5.4E-43 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 RAM_32090 254d30b0e798199663d1f00a9f73c042 514 Gene3D G3DSA:3.40.1190.10 122 350 5.9E-79 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RAM_32090 254d30b0e798199663d1f00a9f73c042 514 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 39 506 1.2E-142 T 13-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 RAM_32090 254d30b0e798199663d1f00a9f73c042 514 SUPERFAMILY SSF53244 349 508 4.71E-46 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 RAM_32090 254d30b0e798199663d1f00a9f73c042 514 Gene3D G3DSA:3.40.1390.10 15 121 1.9E-32 T 13-10-2018 RAM_36850 e61eb6b072b5b61323e6ba9e4aa1c80f 406 Gene3D G3DSA:3.40.50.10540 1 399 1.2E-99 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily RAM_36850 e61eb6b072b5b61323e6ba9e4aa1c80f 406 SUPERFAMILY SSF89796 1 403 2.35E-97 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily RAM_36850 e61eb6b072b5b61323e6ba9e4aa1c80f 406 Pfam PF02515 CoA-transferase family III 1 382 1.6E-91 T 13-10-2018 IPR003673 CoA-transferase family III GO:0003824 RAM_36850 e61eb6b072b5b61323e6ba9e4aa1c80f 406 Gene3D G3DSA:3.30.1540.10 238 334 1.2E-99 T 13-10-2018 RAM_00845 0ca897f14ea3ee756526e3852803168e 208 SUPERFAMILY SSF46894 138 206 2.62E-21 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_00845 0ca897f14ea3ee756526e3852803168e 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 1.6E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_00845 0ca897f14ea3ee756526e3852803168e 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 1.6E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_00845 0ca897f14ea3ee756526e3852803168e 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 1.6E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_00845 0ca897f14ea3ee756526e3852803168e 208 SMART SM00448 3 116 4.0E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_00845 0ca897f14ea3ee756526e3852803168e 208 ProSitePatterns PS00622 LuxR-type HTH domain signature. 163 190 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_00845 0ca897f14ea3ee756526e3852803168e 208 Gene3D G3DSA:3.40.50.12740 3 207 1.5E-65 T 13-10-2018 RAM_00845 0ca897f14ea3ee756526e3852803168e 208 SMART SM00421 146 203 4.3E-26 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_00845 0ca897f14ea3ee756526e3852803168e 208 SUPERFAMILY SSF52172 1 131 1.85E-30 T 13-10-2018 IPR011006 CheY-like superfamily RAM_00845 0ca897f14ea3ee756526e3852803168e 208 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 202 8.0E-19 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_00845 0ca897f14ea3ee756526e3852803168e 208 Pfam PF00072 Response regulator receiver domain 5 116 4.2E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_22660 9c3d572c70b18869cc02de1e63ba0af6 401 Gene3D G3DSA:1.20.81.30 253 365 4.1E-25 T 13-10-2018 RAM_22660 9c3d572c70b18869cc02de1e63ba0af6 401 Pfam PF00482 Type II secretion system (T2SS), protein F 67 189 7.6E-30 T 13-10-2018 IPR018076 Type II secretion system F domain RAM_22660 9c3d572c70b18869cc02de1e63ba0af6 401 Pfam PF00482 Type II secretion system (T2SS), protein F 269 389 6.1E-25 T 13-10-2018 IPR018076 Type II secretion system F domain RAM_22660 9c3d572c70b18869cc02de1e63ba0af6 401 Gene3D G3DSA:1.20.81.30 54 168 1.4E-26 T 13-10-2018 RAM_22660 9c3d572c70b18869cc02de1e63ba0af6 401 PRINTS PR00812 Bacterial general secretion pathway protein F signature 364 378 3.4E-13 T 13-10-2018 IPR003004 GspF/PilC family RAM_22660 9c3d572c70b18869cc02de1e63ba0af6 401 PRINTS PR00812 Bacterial general secretion pathway protein F signature 161 189 3.4E-13 T 13-10-2018 IPR003004 GspF/PilC family RAM_22660 9c3d572c70b18869cc02de1e63ba0af6 401 PRINTS PR00812 Bacterial general secretion pathway protein F signature 380 399 3.4E-13 T 13-10-2018 IPR003004 GspF/PilC family RAM_22660 9c3d572c70b18869cc02de1e63ba0af6 401 PRINTS PR00812 Bacterial general secretion pathway protein F signature 62 74 3.4E-13 T 13-10-2018 IPR003004 GspF/PilC family RAM_22660 9c3d572c70b18869cc02de1e63ba0af6 401 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 161 189 - T 13-10-2018 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 RAM_04195 31e46cd05a3644530da763715a835fe1 394 SUPERFAMILY SSF103473 3 380 9.94E-58 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_04195 31e46cd05a3644530da763715a835fe1 394 Gene3D G3DSA:1.20.1250.20 3 193 6.8E-29 T 13-10-2018 RAM_04195 31e46cd05a3644530da763715a835fe1 394 Pfam PF07690 Major Facilitator Superfamily 8 343 6.2E-42 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_04195 31e46cd05a3644530da763715a835fe1 394 Gene3D G3DSA:1.20.1250.20 195 388 2.1E-16 T 13-10-2018 RAM_12760 0310b14e7eca4bd97c68260eb8b9f2da 384 SUPERFAMILY SSF47203 228 378 2.44E-13 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_12760 0310b14e7eca4bd97c68260eb8b9f2da 384 SUPERFAMILY SSF56645 3 241 9.56E-68 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_12760 0310b14e7eca4bd97c68260eb8b9f2da 384 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 228 374 5.2E-16 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_12760 0310b14e7eca4bd97c68260eb8b9f2da 384 Gene3D G3DSA:1.10.540.10 2 117 1.6E-28 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_12760 0310b14e7eca4bd97c68260eb8b9f2da 384 Gene3D G3DSA:2.40.110.10 121 231 1.2E-34 T 13-10-2018 RAM_12760 0310b14e7eca4bd97c68260eb8b9f2da 384 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 122 209 3.0E-19 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RAM_12760 0310b14e7eca4bd97c68260eb8b9f2da 384 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 118 1.1E-21 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_12760 0310b14e7eca4bd97c68260eb8b9f2da 384 Gene3D G3DSA:1.20.140.10 232 383 2.3E-23 T 13-10-2018 RAM_17070 b67ab1760639933876d74d285a7656a3 822 Gene3D G3DSA:2.60.120.380 665 759 1.5E-12 T 13-10-2018 RAM_17070 b67ab1760639933876d74d285a7656a3 822 SUPERFAMILY SSF53187 237 529 3.01E-49 T 13-10-2018 RAM_17070 b67ab1760639933876d74d285a7656a3 822 Gene3D G3DSA:3.40.630.10 234 541 8.9E-61 T 13-10-2018 RAM_17070 b67ab1760639933876d74d285a7656a3 822 Pfam PF00246 Zinc carboxypeptidase 249 524 1.1E-40 T 13-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 RAM_17070 b67ab1760639933876d74d285a7656a3 822 SMART SM00631 239 536 1.7E-31 T 13-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 RAM_04255 a5cc4218e687613a6a0b0a0b3cc99a89 407 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 10 380 3.8E-68 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 RAM_04255 a5cc4218e687613a6a0b0a0b3cc99a89 407 SUPERFAMILY SSF53659 1 404 3.06E-149 T 13-10-2018 RAM_04255 a5cc4218e687613a6a0b0a0b3cc99a89 407 PIRSF PIRSF000108 1 407 2.8E-222 T 13-10-2018 IPR004790 Isocitrate dehydrogenase NADP-dependent GO:0004450|GO:0006102|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 RAM_04255 a5cc4218e687613a6a0b0a0b3cc99a89 407 SMART SM01329 9 396 1.2E-133 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 RAM_04255 a5cc4218e687613a6a0b0a0b3cc99a89 407 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 271 290 - T 13-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 RAM_04255 a5cc4218e687613a6a0b0a0b3cc99a89 407 TIGRFAM TIGR00127 nadp_idh_euk: isocitrate dehydrogenase, NADP-dependent 3 405 6.9E-210 T 13-10-2018 IPR004790 Isocitrate dehydrogenase NADP-dependent GO:0004450|GO:0006102|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 RAM_04255 a5cc4218e687613a6a0b0a0b3cc99a89 407 Gene3D G3DSA:3.40.718.10 1 406 5.5E-215 T 13-10-2018 RAM_32680 3ed6c62d0e7fdb4924510201ee7c92b8 87 Pfam PF02467 Transcription factor WhiB 8 76 2.9E-24 T 13-10-2018 IPR034768 WhiB-like iron-sulfur binding domain RAM_32680 3ed6c62d0e7fdb4924510201ee7c92b8 87 Hamap MF_01479 Transcriptional regulator WhiB [whiB]. 1 81 16.716 T 13-10-2018 IPR003482 Transcription factor WhiB RAM_32640 5811c6b1a300bdc5247a73687d3e792f 378 Pfam PF02515 CoA-transferase family III 6 371 1.5E-100 T 13-10-2018 IPR003673 CoA-transferase family III GO:0003824 RAM_32640 5811c6b1a300bdc5247a73687d3e792f 378 SUPERFAMILY SSF89796 2 378 5.89E-106 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily RAM_32640 5811c6b1a300bdc5247a73687d3e792f 378 Gene3D G3DSA:3.40.50.10540 5 378 4.7E-105 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily RAM_32640 5811c6b1a300bdc5247a73687d3e792f 378 Gene3D G3DSA:3.30.1540.10 224 323 4.7E-105 T 13-10-2018 RAM_14060 f47839a3c3c8bc7939ac80c69388ba62 168 SUPERFAMILY SSF52507 9 149 1.7E-15 T 13-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 RAM_14060 f47839a3c3c8bc7939ac80c69388ba62 168 Gene3D G3DSA:3.40.50.1950 2 162 2.0E-14 T 13-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 RAM_14060 f47839a3c3c8bc7939ac80c69388ba62 168 Pfam PF02441 Flavoprotein 11 148 6.2E-9 T 13-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 RAM_06300 e662974ae4a1e802be6750fe5c58c60e 348 Pfam PF00899 ThiF family 122 339 3.3E-10 T 13-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 RAM_06300 e662974ae4a1e802be6750fe5c58c60e 348 Gene3D G3DSA:3.40.50.720 116 341 2.8E-22 T 13-10-2018 RAM_06300 e662974ae4a1e802be6750fe5c58c60e 348 SUPERFAMILY SSF69572 117 338 6.93E-15 T 13-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 RAM_06305 4551c8b093fd89209c89d3c6c2edf766 169 Gene3D G3DSA:3.30.2010.10 74 154 3.2E-12 T 13-10-2018 RAM_06305 4551c8b093fd89209c89d3c6c2edf766 169 Pfam PF01863 Protein of unknown function DUF45 86 144 1.3E-20 T 13-10-2018 IPR002725 Protein of unknown function DUF45 RAM_34050 bac08f8f7631b88b36a9c3a909b09131 545 Pfam PF07905 Purine catabolism regulatory protein-like family 7 129 1.4E-36 T 13-10-2018 IPR012914 Purine catabolism PurC-like domain RAM_34050 bac08f8f7631b88b36a9c3a909b09131 545 Gene3D G3DSA:1.10.10.2840 400 533 4.3E-8 T 13-10-2018 RAM_34050 bac08f8f7631b88b36a9c3a909b09131 545 Pfam PF13556 PucR C-terminal helix-turn-helix domain 470 528 4.4E-14 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain RAM_35430 cf5ec1075f0e009872fd00be332c73f7 275 Gene3D G3DSA:2.60.120.620 15 264 3.7E-7 T 13-10-2018 RAM_35430 cf5ec1075f0e009872fd00be332c73f7 275 SUPERFAMILY SSF51197 25 241 3.16E-9 T 13-10-2018 RAM_47135 f1bad9e01b06144e4b02ba0902d13362 259 SUPERFAMILY SSF53474 4 256 5.5E-41 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_47135 f1bad9e01b06144e4b02ba0902d13362 259 Pfam PF12697 Alpha/beta hydrolase family 15 251 1.6E-19 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_47135 f1bad9e01b06144e4b02ba0902d13362 259 PRINTS PR00111 Alpha/beta hydrolase fold signature 38 53 1.2E-7 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_47135 f1bad9e01b06144e4b02ba0902d13362 259 PRINTS PR00111 Alpha/beta hydrolase fold signature 204 218 1.2E-7 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_47135 f1bad9e01b06144e4b02ba0902d13362 259 PRINTS PR00111 Alpha/beta hydrolase fold signature 82 95 1.2E-7 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_47135 f1bad9e01b06144e4b02ba0902d13362 259 Gene3D G3DSA:3.40.50.1820 3 258 9.6E-42 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_12205 00ef72197358176c1b6917def7bb37d6 69 Gene3D G3DSA:1.10.3730.20 1 40 1.8E-5 T 13-10-2018 RAM_12205 00ef72197358176c1b6917def7bb37d6 69 Pfam PF00893 Small Multidrug Resistance protein 1 37 2.0E-5 T 13-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 RAM_15580 7ad02538636ed5665d39332183bc8c0d 285 Gene3D G3DSA:3.90.25.10 137 268 1.4E-93 T 13-10-2018 RAM_15580 7ad02538636ed5665d39332183bc8c0d 285 SUPERFAMILY SSF51735 2 247 5.53E-63 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_15580 7ad02538636ed5665d39332183bc8c0d 285 Gene3D G3DSA:3.40.50.720 3 267 1.4E-93 T 13-10-2018 RAM_15580 7ad02538636ed5665d39332183bc8c0d 285 Pfam PF05368 NmrA-like family 2 220 6.3E-27 T 13-10-2018 IPR008030 NmrA-like domain Reactome: R-HSA-70635 RAM_45425 45a9b1ac4ea85beacede1c0e81153342 722 SUPERFAMILY SSF56601 228 714 6.57E-59 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_45425 45a9b1ac4ea85beacede1c0e81153342 722 Pfam PF00905 Penicillin binding protein transpeptidase domain 456 636 1.0E-12 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RAM_45425 45a9b1ac4ea85beacede1c0e81153342 722 Pfam PF00905 Penicillin binding protein transpeptidase domain 356 418 3.8E-5 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RAM_45425 45a9b1ac4ea85beacede1c0e81153342 722 Pfam PF00912 Transglycosylase 60 246 8.7E-58 T 13-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RAM_45425 45a9b1ac4ea85beacede1c0e81153342 722 Gene3D G3DSA:1.10.3810.10 53 261 6.7E-66 T 13-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RAM_45425 45a9b1ac4ea85beacede1c0e81153342 722 SUPERFAMILY SSF53955 48 270 2.0E-64 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily RAM_45425 45a9b1ac4ea85beacede1c0e81153342 722 Gene3D G3DSA:3.40.710.10 284 718 3.3E-57 T 13-10-2018 RAM_42795 748aa9f2561652108e8a04a7e87f2c04 230 SMART SM00448 1 112 4.7E-45 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_42795 748aa9f2561652108e8a04a7e87f2c04 230 Pfam PF00486 Transcriptional regulatory protein, C terminal 150 225 5.9E-25 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_42795 748aa9f2561652108e8a04a7e87f2c04 230 Gene3D G3DSA:1.10.10.10 131 229 7.9E-33 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_42795 748aa9f2561652108e8a04a7e87f2c04 230 SMART SM00862 150 225 2.6E-25 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_42795 748aa9f2561652108e8a04a7e87f2c04 230 Gene3D G3DSA:3.40.50.2300 1 130 2.2E-41 T 13-10-2018 RAM_42795 748aa9f2561652108e8a04a7e87f2c04 230 SUPERFAMILY SSF52172 1 184 1.07E-44 T 13-10-2018 IPR011006 CheY-like superfamily RAM_42795 748aa9f2561652108e8a04a7e87f2c04 230 Pfam PF00072 Response regulator receiver domain 3 112 1.1E-31 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_41825 2ba5e64f4be8532f1b3a48f0a04cd672 370 Pfam PF00672 HAMP domain 98 146 1.5E-7 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_41825 2ba5e64f4be8532f1b3a48f0a04cd672 370 SUPERFAMILY SSF158472 99 148 2.48E-7 T 13-10-2018 RAM_41825 2ba5e64f4be8532f1b3a48f0a04cd672 370 SMART SM00387 257 370 1.5E-24 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_41825 2ba5e64f4be8532f1b3a48f0a04cd672 370 Pfam PF00512 His Kinase A (phospho-acceptor) domain 152 213 2.6E-8 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_41825 2ba5e64f4be8532f1b3a48f0a04cd672 370 SMART SM00388 151 215 6.1E-7 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_41825 2ba5e64f4be8532f1b3a48f0a04cd672 370 SUPERFAMILY SSF55874 206 368 1.44E-30 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_41825 2ba5e64f4be8532f1b3a48f0a04cd672 370 SUPERFAMILY SSF47384 134 214 5.49E-12 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RAM_41825 2ba5e64f4be8532f1b3a48f0a04cd672 370 PRINTS PR00344 Bacterial sensor protein C-terminal signature 330 348 1.0E-6 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_41825 2ba5e64f4be8532f1b3a48f0a04cd672 370 PRINTS PR00344 Bacterial sensor protein C-terminal signature 354 367 1.0E-6 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_41825 2ba5e64f4be8532f1b3a48f0a04cd672 370 PRINTS PR00344 Bacterial sensor protein C-terminal signature 294 308 1.0E-6 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_41825 2ba5e64f4be8532f1b3a48f0a04cd672 370 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 262 368 2.4E-13 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_41825 2ba5e64f4be8532f1b3a48f0a04cd672 370 Gene3D G3DSA:3.30.565.10 212 368 5.6E-30 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_41825 2ba5e64f4be8532f1b3a48f0a04cd672 370 SMART SM00304 97 150 9.3E-11 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_41825 2ba5e64f4be8532f1b3a48f0a04cd672 370 Gene3D G3DSA:1.10.287.130 101 211 8.5E-24 T 13-10-2018 RAM_02315 488f75ad9d9f0b7a6989b9660ecf45d0 351 SUPERFAMILY SSF56194 211 349 1.7E-32 T 13-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RAM_02315 488f75ad9d9f0b7a6989b9660ecf45d0 351 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 12 347 3.1E-47 T 13-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RAM_02315 488f75ad9d9f0b7a6989b9660ecf45d0 351 Pfam PF01565 FAD binding domain 26 153 3.6E-24 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RAM_02315 488f75ad9d9f0b7a6989b9660ecf45d0 351 SUPERFAMILY SSF56176 12 183 2.49E-39 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RAM_02315 488f75ad9d9f0b7a6989b9660ecf45d0 351 Gene3D G3DSA:3.90.78.10 230 350 2.7E-38 T 13-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RAM_02315 488f75ad9d9f0b7a6989b9660ecf45d0 351 Gene3D G3DSA:3.30.43.10 8 76 3.4E-18 T 13-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 RAM_02315 488f75ad9d9f0b7a6989b9660ecf45d0 351 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 351 76.933 T 13-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RAM_02315 488f75ad9d9f0b7a6989b9660ecf45d0 351 Gene3D G3DSA:3.30.465.10 77 224 3.7E-40 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 RAM_02315 488f75ad9d9f0b7a6989b9660ecf45d0 351 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 214 347 1.1E-37 T 13-10-2018 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RAM_46265 5db0f85d338005db6c27be189851da5b 376 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 227 290 2.2E-15 T 13-10-2018 IPR017703 YgfZ/GcvT conserved site RAM_46265 5db0f85d338005db6c27be189851da5b 376 PIRSF PIRSF006487 24 357 6.7E-21 T 13-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 RAM_46265 5db0f85d338005db6c27be189851da5b 376 Gene3D G3DSA:3.30.1360.120 26 354 2.5E-64 T 13-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RAM_46265 5db0f85d338005db6c27be189851da5b 376 Pfam PF01571 Aminomethyltransferase folate-binding domain 25 254 3.4E-27 T 13-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain RAM_46265 5db0f85d338005db6c27be189851da5b 376 SUPERFAMILY SSF103025 25 279 2.67E-55 T 13-10-2018 RAM_46265 5db0f85d338005db6c27be189851da5b 376 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 264 352 8.2E-7 T 13-10-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RAM_01925 440e83ef8b7d4c7375e72b9fef86e08f 190 Gene3D G3DSA:1.10.3210.10 6 159 3.9E-10 T 13-10-2018 RAM_01925 440e83ef8b7d4c7375e72b9fef86e08f 190 SUPERFAMILY SSF109604 30 162 1.6E-18 T 13-10-2018 RAM_01925 440e83ef8b7d4c7375e72b9fef86e08f 190 TIGRFAM TIGR00277 HDIG: HDIG domain 36 106 7.5E-8 T 13-10-2018 IPR006675 HDIG domain RAM_01925 440e83ef8b7d4c7375e72b9fef86e08f 190 Pfam PF01966 HD domain 33 113 4.2E-9 T 13-10-2018 IPR006674 HD domain RAM_00255 9df78404b099400a6ff2af433aa878d3 658 Gene3D G3DSA:1.10.510.10 96 284 1.8E-56 T 13-10-2018 RAM_00255 9df78404b099400a6ff2af433aa878d3 658 SUPERFAMILY SSF56112 8 283 5.8E-79 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_00255 9df78404b099400a6ff2af433aa878d3 658 Pfam PF03793 PASTA domain 578 640 9.9E-14 T 13-10-2018 IPR005543 PASTA domain RAM_00255 9df78404b099400a6ff2af433aa878d3 658 Pfam PF03793 PASTA domain 358 432 1.3E-6 T 13-10-2018 IPR005543 PASTA domain RAM_00255 9df78404b099400a6ff2af433aa878d3 658 Pfam PF03793 PASTA domain 440 503 5.9E-14 T 13-10-2018 IPR005543 PASTA domain RAM_00255 9df78404b099400a6ff2af433aa878d3 658 Pfam PF03793 PASTA domain 509 569 4.7E-11 T 13-10-2018 IPR005543 PASTA domain RAM_00255 9df78404b099400a6ff2af433aa878d3 658 SMART SM00740 504 569 3.4E-9 T 13-10-2018 IPR005543 PASTA domain RAM_00255 9df78404b099400a6ff2af433aa878d3 658 SMART SM00740 435 503 7.3E-12 T 13-10-2018 IPR005543 PASTA domain RAM_00255 9df78404b099400a6ff2af433aa878d3 658 SMART SM00740 354 433 1.4E-5 T 13-10-2018 IPR005543 PASTA domain RAM_00255 9df78404b099400a6ff2af433aa878d3 658 SMART SM00740 573 641 2.8E-11 T 13-10-2018 IPR005543 PASTA domain RAM_00255 9df78404b099400a6ff2af433aa878d3 658 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 17 40 - T 13-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 RAM_00255 9df78404b099400a6ff2af433aa878d3 658 Gene3D G3DSA:3.30.10.20 435 503 6.3E-15 T 13-10-2018 RAM_00255 9df78404b099400a6ff2af433aa878d3 658 Gene3D G3DSA:3.30.200.20 1 94 2.5E-35 T 13-10-2018 RAM_00255 9df78404b099400a6ff2af433aa878d3 658 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 134 146 - T 13-10-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 RAM_00255 9df78404b099400a6ff2af433aa878d3 658 Pfam PF00069 Protein kinase domain 11 264 3.1E-52 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_00255 9df78404b099400a6ff2af433aa878d3 658 SMART SM00220 11 274 4.4E-66 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_00255 9df78404b099400a6ff2af433aa878d3 658 Gene3D G3DSA:3.30.10.20 509 571 1.7E-14 T 13-10-2018 RAM_00255 9df78404b099400a6ff2af433aa878d3 658 Gene3D G3DSA:3.30.10.20 572 640 3.1E-15 T 13-10-2018 RAM_00255 9df78404b099400a6ff2af433aa878d3 658 Gene3D G3DSA:3.30.10.20 355 432 3.5E-9 T 13-10-2018 RAM_02450 8ea02f1a299917ea231e89dc817a68e6 78 Pfam PF05768 Glutaredoxin-like domain (DUF836) 5 77 1.2E-16 T 13-10-2018 IPR008554 Glutaredoxin-like RAM_02450 8ea02f1a299917ea231e89dc817a68e6 78 SUPERFAMILY SSF52833 4 77 2.24E-17 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RAM_02450 8ea02f1a299917ea231e89dc817a68e6 78 Gene3D G3DSA:3.40.30.10 1 78 1.2E-23 T 13-10-2018 RAM_30175 62e32e992b927d0122089663a176172c 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 7.2E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_30175 62e32e992b927d0122089663a176172c 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 7.2E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_30175 62e32e992b927d0122089663a176172c 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 7.2E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_30175 62e32e992b927d0122089663a176172c 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 7.2E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_30175 62e32e992b927d0122089663a176172c 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 7.2E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_30175 62e32e992b927d0122089663a176172c 286 Pfam PF00106 short chain dehydrogenase 11 194 2.3E-48 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_30175 62e32e992b927d0122089663a176172c 286 SUPERFAMILY SSF51735 9 243 6.26E-62 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_30175 62e32e992b927d0122089663a176172c 286 Gene3D G3DSA:3.40.50.720 7 283 1.7E-78 T 13-10-2018 RAM_30175 62e32e992b927d0122089663a176172c 286 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 1.0E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_30175 62e32e992b927d0122089663a176172c 286 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 1.0E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_30175 62e32e992b927d0122089663a176172c 286 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 1.0E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_37855 0dabe7fa734a5b5f7f49e6269f23f7e6 271 ProSitePatterns PS00211 ABC transporters family signature. 163 177 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_37855 0dabe7fa734a5b5f7f49e6269f23f7e6 271 SUPERFAMILY SSF52540 19 265 4.14E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_37855 0dabe7fa734a5b5f7f49e6269f23f7e6 271 Pfam PF00005 ABC transporter 35 190 9.4E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_37855 0dabe7fa734a5b5f7f49e6269f23f7e6 271 SMART SM00382 44 246 2.0E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_37855 0dabe7fa734a5b5f7f49e6269f23f7e6 271 Gene3D G3DSA:3.40.50.300 17 269 7.9E-65 T 13-10-2018 RAM_34305 f80ac5c721735b0df01372a6bec334c3 421 TIGRFAM TIGR00260 thrC: threonine synthase 67 395 8.5E-85 T 13-10-2018 IPR004450 Threonine synthase-like RAM_34305 f80ac5c721735b0df01372a6bec334c3 421 Gene3D G3DSA:3.40.50.1100 121 218 3.6E-101 T 13-10-2018 RAM_34305 f80ac5c721735b0df01372a6bec334c3 421 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 88 389 2.5E-66 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RAM_34305 f80ac5c721735b0df01372a6bec334c3 421 SUPERFAMILY SSF53686 17 413 1.44E-83 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RAM_34305 f80ac5c721735b0df01372a6bec334c3 421 Gene3D G3DSA:3.40.50.1100 69 394 3.6E-101 T 13-10-2018 RAM_05720 43c496299e10ae48f93e8dc17d3437ea 367 SUPERFAMILY SSF46894 273 365 1.13E-13 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_05720 43c496299e10ae48f93e8dc17d3437ea 367 SMART SM00862 294 363 1.8E-14 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_05720 43c496299e10ae48f93e8dc17d3437ea 367 Pfam PF02602 Uroporphyrinogen-III synthase HemD 21 262 5.3E-37 T 13-10-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RAM_05720 43c496299e10ae48f93e8dc17d3437ea 367 SUPERFAMILY SSF69618 9 268 1.57E-53 T 13-10-2018 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RAM_05720 43c496299e10ae48f93e8dc17d3437ea 367 Pfam PF00486 Transcriptional regulatory protein, C terminal 301 363 2.1E-11 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_05720 43c496299e10ae48f93e8dc17d3437ea 367 Gene3D G3DSA:1.10.10.10 269 364 1.7E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_05720 43c496299e10ae48f93e8dc17d3437ea 367 Gene3D G3DSA:3.40.50.10090 40 177 1.1E-62 T 13-10-2018 RAM_05720 43c496299e10ae48f93e8dc17d3437ea 367 Gene3D G3DSA:3.40.50.10090 14 261 1.1E-62 T 13-10-2018 RAM_38155 00778c9ab78a1b91995e1588f896412f 123 TIGRFAM TIGR00377 ant_ant_sig: anti-anti-sigma factor 16 118 8.5E-18 T 13-10-2018 IPR003658 Anti-sigma factor antagonist GO:0006355|GO:0045152 RAM_38155 00778c9ab78a1b91995e1588f896412f 123 Gene3D G3DSA:3.30.750.24 12 123 5.0E-27 T 13-10-2018 IPR036513 STAS domain superfamily RAM_38155 00778c9ab78a1b91995e1588f896412f 123 Pfam PF13466 STAS domain 29 109 9.6E-11 T 13-10-2018 IPR002645 STAS domain RAM_38155 00778c9ab78a1b91995e1588f896412f 123 SUPERFAMILY SSF52091 17 122 1.88E-17 T 13-10-2018 IPR036513 STAS domain superfamily RAM_40320 e9f932e1cf984e59c61ac11886b83ffb 305 SUPERFAMILY SSF159659 6 266 2.35E-86 T 13-10-2018 RAM_40320 e9f932e1cf984e59c61ac11886b83ffb 305 Pfam PF09754 PAC2 family 27 242 7.8E-42 T 13-10-2018 IPR019151 Proteasome assembly chaperone 2 RAM_40320 e9f932e1cf984e59c61ac11886b83ffb 305 Gene3D G3DSA:3.40.50.10900 2 223 9.3E-72 T 13-10-2018 IPR038389 Proteasome assembly chaperone 2 superfamily RAM_40320 e9f932e1cf984e59c61ac11886b83ffb 305 Gene3D G3DSA:1.10.287.100 224 266 1.2E-14 T 13-10-2018 RAM_40320 e9f932e1cf984e59c61ac11886b83ffb 305 PIRSF PIRSF028754 7 305 2.3E-94 T 13-10-2018 IPR008492 Protein of unknown function DUF774 RAM_40970 498bed8987b27cfd7005adb5bdca29f4 506 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 400 502 8.5E-8 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_40970 498bed8987b27cfd7005adb5bdca29f4 506 Pfam PF07568 Histidine kinase 303 370 1.7E-22 T 13-10-2018 IPR011495 Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain RAM_40970 498bed8987b27cfd7005adb5bdca29f4 506 SUPERFAMILY SSF55874 360 482 1.05E-14 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_40970 498bed8987b27cfd7005adb5bdca29f4 506 SMART SM00387 397 504 1.7E-11 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_40970 498bed8987b27cfd7005adb5bdca29f4 506 SUPERFAMILY SSF55785 182 294 2.97E-5 T 13-10-2018 IPR035965 PAS domain superfamily RAM_40970 498bed8987b27cfd7005adb5bdca29f4 506 Pfam PF08448 PAS fold 180 289 4.4E-10 T 13-10-2018 IPR013656 PAS fold-4 RAM_40970 498bed8987b27cfd7005adb5bdca29f4 506 Gene3D G3DSA:3.30.450.20 138 289 2.1E-38 T 13-10-2018 RAM_40970 498bed8987b27cfd7005adb5bdca29f4 506 Gene3D G3DSA:3.30.565.10 359 505 2.8E-22 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_40970 498bed8987b27cfd7005adb5bdca29f4 506 Gene3D G3DSA:3.30.450.280 1 137 1.1E-43 T 13-10-2018 IPR038424 Signal transduction histidine kinase, N-terminal domain superfamily RAM_40970 498bed8987b27cfd7005adb5bdca29f4 506 Pfam PF12282 Signal transduction histidine kinase 4 152 1.6E-52 T 13-10-2018 IPR022066 Signal transduction histidine kinase, N-terminal RAM_06820 32d057f34a5048db64a153afa2fe2ea5 342 Gene3D G3DSA:3.20.20.30 1 342 1.3E-82 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_06820 32d057f34a5048db64a153afa2fe2ea5 342 Pfam PF00296 Luciferase-like monooxygenase 1 307 1.4E-47 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_06820 32d057f34a5048db64a153afa2fe2ea5 342 SUPERFAMILY SSF51679 1 339 5.89E-74 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_22620 34a44140fd2690662c14e811f966031a 706 SMART SM01043 97 243 1.3E-40 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_22620 34a44140fd2690662c14e811f966031a 706 Pfam PF00486 Transcriptional regulatory protein, C terminal 26 90 1.4E-7 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_22620 34a44140fd2690662c14e811f966031a 706 SUPERFAMILY SSF46894 6 90 1.13E-12 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_22620 34a44140fd2690662c14e811f966031a 706 SMART SM00862 18 90 3.7E-11 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_22620 34a44140fd2690662c14e811f966031a 706 Pfam PF03704 Bacterial transcriptional activator domain 97 243 9.4E-34 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_22620 34a44140fd2690662c14e811f966031a 706 SUPERFAMILY SSF48452 94 258 2.89E-31 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_22620 34a44140fd2690662c14e811f966031a 706 Gene3D G3DSA:1.10.10.10 2 92 2.3E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_22620 34a44140fd2690662c14e811f966031a 706 Gene3D G3DSA:1.25.40.10 94 271 1.5E-42 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_18935 82bcb20415921d009c545c97d639cd2b 731 SUPERFAMILY SSF54665 5 148 1.7E-35 T 13-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily RAM_18935 82bcb20415921d009c545c97d639cd2b 731 Gene3D G3DSA:3.30.365.10 436 589 2.3E-84 T 13-10-2018 RAM_18935 82bcb20415921d009c545c97d639cd2b 731 Gene3D G3DSA:3.30.365.10 178 271 3.2E-64 T 13-10-2018 RAM_18935 82bcb20415921d009c545c97d639cd2b 731 SMART SM01008 22 135 9.0E-37 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RAM_18935 82bcb20415921d009c545c97d639cd2b 731 SUPERFAMILY SSF56003 127 730 2.88E-161 T 13-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 RAM_18935 82bcb20415921d009c545c97d639cd2b 731 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 147 673 4.2E-132 T 13-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RAM_18935 82bcb20415921d009c545c97d639cd2b 731 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 22 133 3.6E-21 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RAM_18935 82bcb20415921d009c545c97d639cd2b 731 Gene3D G3DSA:3.30.365.10 590 728 2.3E-84 T 13-10-2018 RAM_18935 82bcb20415921d009c545c97d639cd2b 731 Gene3D G3DSA:3.30.365.10 154 376 3.2E-64 T 13-10-2018 RAM_18935 82bcb20415921d009c545c97d639cd2b 731 Gene3D G3DSA:3.90.1170.50 2 134 6.4E-30 T 13-10-2018 RAM_44505 8f1f1477f56a3236b5d0228fbf1a9abd 190 SMART SM00418 13 90 8.1E-5 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_44505 8f1f1477f56a3236b5d0228fbf1a9abd 190 Gene3D G3DSA:1.10.10.10 11 126 1.4E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_44505 8f1f1477f56a3236b5d0228fbf1a9abd 190 Pfam PF12840 Helix-turn-helix domain 13 69 2.8E-12 T 13-10-2018 RAM_44505 8f1f1477f56a3236b5d0228fbf1a9abd 190 SUPERFAMILY SSF46785 12 106 1.25E-14 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_24890 71a1c9afe08f089fab84ebc7620bc0f7 452 TIGRFAM TIGR03686 pupylate_PafA: Pup--protein ligase 3 452 3.2E-235 T 13-10-2018 IPR022279 Pup--protein ligase GO:0010498|GO:0016879|GO:0019941 MetaCyc: PWY-7893 RAM_24890 71a1c9afe08f089fab84ebc7620bc0f7 452 Pfam PF03136 Pup-ligase protein 4 422 5.7E-157 T 13-10-2018 IPR004347 Pup ligase/deamidase GO:0010498|GO:0019941 MetaCyc: PWY-7893 RAM_24890 71a1c9afe08f089fab84ebc7620bc0f7 452 PIRSF PIRSF018077 1 452 2.5E-181 T 13-10-2018 IPR004347 Pup ligase/deamidase GO:0010498|GO:0019941 MetaCyc: PWY-7893 RAM_24890 71a1c9afe08f089fab84ebc7620bc0f7 452 Hamap MF_02111 Pup--protein ligase [pafA]. 1 452 50.989 T 13-10-2018 IPR022279 Pup--protein ligase GO:0010498|GO:0016879|GO:0019941 MetaCyc: PWY-7893 RAM_03240 2d5659014371427c8babc68195ca7532 242 Pfam PF00440 Bacterial regulatory proteins, tetR family 34 78 1.5E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_03240 2d5659014371427c8babc68195ca7532 242 Gene3D G3DSA:1.10.10.60 5 84 1.0E-27 T 13-10-2018 RAM_03240 2d5659014371427c8babc68195ca7532 242 SUPERFAMILY SSF48498 97 239 3.0E-26 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_03240 2d5659014371427c8babc68195ca7532 242 SUPERFAMILY SSF46689 27 87 3.95E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_03240 2d5659014371427c8babc68195ca7532 242 Pfam PF02909 Tetracyclin repressor, C-terminal all-alpha domain 94 238 4.4E-14 T 13-10-2018 IPR004111 Tetracycline transcriptional regulator, TetR, C-terminal GO:0045892 RAM_03240 2d5659014371427c8babc68195ca7532 242 Gene3D G3DSA:1.10.357.10 85 241 1.7E-27 T 13-10-2018 RAM_00680 c3af6c29fff9cb1d9e4c8ca7262908d8 263 Gene3D G3DSA:2.40.50.40 147 219 2.9E-8 T 13-10-2018 RAM_00680 c3af6c29fff9cb1d9e4c8ca7262908d8 263 SUPERFAMILY SSF52172 2 132 4.27E-23 T 13-10-2018 IPR011006 CheY-like superfamily RAM_00680 c3af6c29fff9cb1d9e4c8ca7262908d8 263 Pfam PF04397 LytTr DNA-binding domain 162 256 2.6E-22 T 13-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 RAM_00680 c3af6c29fff9cb1d9e4c8ca7262908d8 263 SMART SM00850 160 257 1.3E-30 T 13-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 RAM_00680 c3af6c29fff9cb1d9e4c8ca7262908d8 263 Pfam PF00072 Response regulator receiver domain 2 124 2.3E-15 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_00680 c3af6c29fff9cb1d9e4c8ca7262908d8 263 Gene3D G3DSA:3.40.50.2300 1 136 2.1E-24 T 13-10-2018 RAM_00680 c3af6c29fff9cb1d9e4c8ca7262908d8 263 SMART SM00448 1 124 3.3E-10 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_42590 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 SUPERFAMILY SSF47336 1369 1441 2.49E-16 T 13-10-2018 IPR036736 ACP-like superfamily RAM_42590 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 Gene3D G3DSA:3.30.300.30 1285 1354 1.1E-8 T 13-10-2018 RAM_42590 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 Gene3D G3DSA:3.40.50.12780 481 881 2.9E-115 T 13-10-2018 RAM_42590 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 Gene3D G3DSA:3.30.559.30 196 457 3.3E-77 T 13-10-2018 RAM_42590 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 Pfam PF00550 Phosphopantetheine attachment site 1376 1434 1.4E-14 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_42590 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 SUPERFAMILY SSF52777 197 453 1.11E-35 T 13-10-2018 RAM_42590 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 Pfam PF00501 AMP-binding enzyme 491 889 3.8E-85 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_42590 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 510 913 1.6E-121 T 13-10-2018 IPR010071 Amino acid adenylation domain RAM_42590 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 Gene3D G3DSA:3.30.300.30 883 971 3.7E-15 T 13-10-2018 RAM_42590 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 SUPERFAMILY SSF53335 1095 1288 9.28E-28 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_42590 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 SMART SM01294 1376 1440 0.0065 T 13-10-2018 RAM_42590 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1399 1414 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_42590 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 SUPERFAMILY SSF52777 13 186 1.09E-25 T 13-10-2018 RAM_42590 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 Gene3D G3DSA:1.10.1200.10 1359 1444 3.8E-20 T 13-10-2018 IPR036736 ACP-like superfamily RAM_42590 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 SMART SM00823 Phosphopantetheine attachment site 1375 1444 6.1E-6 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_42590 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 Pfam PF00668 Condensation domain 44 349 4.8E-24 T 13-10-2018 IPR001242 Condensation domain RAM_42590 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 SUPERFAMILY SSF56801 473 1388 4.84E-133 T 13-10-2018 RAM_42590 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 Gene3D G3DSA:3.30.559.10 12 192 3.0E-57 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_42590 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 Gene3D G3DSA:3.40.50.150 1068 1284 1.0E-43 T 13-10-2018 RAM_42590 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 ProSitePatterns PS00455 Putative AMP-binding domain signature. 631 642 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_42590 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 Pfam PF08242 Methyltransferase domain 1130 1229 1.8E-18 T 13-10-2018 IPR013217 Methyltransferase type 12 RAM_15105 336eaf89dacab3a242cd75d75d494581 309 SUPERFAMILY SSF55174 14 65 4.94E-5 T 13-10-2018 RAM_15105 336eaf89dacab3a242cd75d75d494581 309 SMART SM00363 15 79 0.0076 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_15105 336eaf89dacab3a242cd75d75d494581 309 Pfam PF00849 RNA pseudouridylate synthase 89 243 9.0E-32 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RAM_15105 336eaf89dacab3a242cd75d75d494581 309 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 13 305 5.4E-84 T 13-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 RAM_15105 336eaf89dacab3a242cd75d75d494581 309 Gene3D G3DSA:3.10.290.10 5 67 2.3E-8 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 RAM_15105 336eaf89dacab3a242cd75d75d494581 309 Gene3D G3DSA:3.30.2350.10 81 308 1.6E-67 T 13-10-2018 RAM_15105 336eaf89dacab3a242cd75d75d494581 309 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 135 149 - T 13-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 RAM_15105 336eaf89dacab3a242cd75d75d494581 309 SUPERFAMILY SSF55120 78 305 6.88E-68 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 RAM_38510 c30a0cacdccb0c5ba9a315d2b89fcf53 326 SUPERFAMILY SSF51735 119 319 4.19E-32 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_38510 c30a0cacdccb0c5ba9a315d2b89fcf53 326 SMART SM00829 10 320 2.6E-19 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_38510 c30a0cacdccb0c5ba9a315d2b89fcf53 326 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 144 165 - T 13-10-2018 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 RAM_38510 c30a0cacdccb0c5ba9a315d2b89fcf53 326 Pfam PF13602 Zinc-binding dehydrogenase 186 320 5.0E-29 T 13-10-2018 RAM_38510 c30a0cacdccb0c5ba9a315d2b89fcf53 326 Gene3D G3DSA:3.90.180.10 18 320 1.3E-91 T 13-10-2018 RAM_38510 c30a0cacdccb0c5ba9a315d2b89fcf53 326 Gene3D G3DSA:3.40.50.720 130 271 1.3E-91 T 13-10-2018 RAM_38510 c30a0cacdccb0c5ba9a315d2b89fcf53 326 SUPERFAMILY SSF50129 1 149 6.54E-34 T 13-10-2018 IPR011032 GroES-like superfamily RAM_47790 5fb16f1f93cab76f0642dbbe46107bb9 385 SUPERFAMILY SSF140453 86 158 5.36E-7 T 13-10-2018 IPR036689 ESAT-6-like superfamily RAM_47790 5fb16f1f93cab76f0642dbbe46107bb9 385 Gene3D G3DSA:1.10.287.1060 83 165 4.5E-5 T 13-10-2018 RAM_06410 c36a35da2aa0fefbecb8730952c8fdec 405 Gene3D G3DSA:1.20.1250.20 18 396 2.0E-21 T 13-10-2018 RAM_06410 c36a35da2aa0fefbecb8730952c8fdec 405 SUPERFAMILY SSF103473 20 399 4.45E-25 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_10420 c9fb79e8b4ed88fac4f528c22e431e22 464 Gene3D G3DSA:3.50.50.60 4 333 4.5E-93 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_10420 c9fb79e8b4ed88fac4f528c22e431e22 464 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 348 457 1.4E-27 T 13-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RAM_10420 c9fb79e8b4ed88fac4f528c22e431e22 464 SUPERFAMILY SSF55424 344 459 1.01E-31 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RAM_10420 c9fb79e8b4ed88fac4f528c22e431e22 464 PIRSF PIRSF000350 1 444 2.3E-83 T 13-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 RAM_10420 c9fb79e8b4ed88fac4f528c22e431e22 464 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 320 4.6E-46 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAM_10420 c9fb79e8b4ed88fac4f528c22e431e22 464 TIGRFAM TIGR03452 mycothione_red: mycothione reductase 3 461 1.6E-202 T 13-10-2018 IPR017817 Mycothione reductase MetaCyc: PWY-6421 RAM_10420 c9fb79e8b4ed88fac4f528c22e431e22 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 264 278 4.5E-41 T 13-10-2018 RAM_10420 c9fb79e8b4ed88fac4f528c22e431e22 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 344 365 4.5E-41 T 13-10-2018 RAM_10420 c9fb79e8b4ed88fac4f528c22e431e22 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 177 202 4.5E-41 T 13-10-2018 RAM_10420 c9fb79e8b4ed88fac4f528c22e431e22 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 4.5E-41 T 13-10-2018 RAM_10420 c9fb79e8b4ed88fac4f528c22e431e22 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 409 424 4.5E-41 T 13-10-2018 RAM_10420 c9fb79e8b4ed88fac4f528c22e431e22 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 141 150 4.5E-41 T 13-10-2018 RAM_10420 c9fb79e8b4ed88fac4f528c22e431e22 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 307 314 4.5E-41 T 13-10-2018 RAM_10420 c9fb79e8b4ed88fac4f528c22e431e22 464 Gene3D G3DSA:3.50.50.60 157 277 4.5E-93 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_10420 c9fb79e8b4ed88fac4f528c22e431e22 464 SUPERFAMILY SSF51905 3 371 1.57E-42 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_10420 c9fb79e8b4ed88fac4f528c22e431e22 464 Gene3D G3DSA:3.30.390.30 347 463 1.3E-34 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RAM_10420 c9fb79e8b4ed88fac4f528c22e431e22 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 6.4E-23 T 13-10-2018 RAM_10420 c9fb79e8b4ed88fac4f528c22e431e22 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 292 314 6.4E-23 T 13-10-2018 RAM_10420 c9fb79e8b4ed88fac4f528c22e431e22 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 263 279 6.4E-23 T 13-10-2018 RAM_10420 c9fb79e8b4ed88fac4f528c22e431e22 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 138 156 6.4E-23 T 13-10-2018 RAM_10420 c9fb79e8b4ed88fac4f528c22e431e22 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 177 195 6.4E-23 T 13-10-2018 RAM_10420 c9fb79e8b4ed88fac4f528c22e431e22 464 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 36 46 - T 13-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 RAM_18790 a9002915bb53dfcc0859a2b66a31ea0a 459 SMART SM00388 236 303 4.5E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_18790 a9002915bb53dfcc0859a2b66a31ea0a 459 SMART SM00387 342 447 3.0E-28 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_18790 a9002915bb53dfcc0859a2b66a31ea0a 459 Pfam PF00672 HAMP domain 182 231 9.4E-13 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_18790 a9002915bb53dfcc0859a2b66a31ea0a 459 SUPERFAMILY SSF158472 182 232 9.29E-9 T 13-10-2018 RAM_18790 a9002915bb53dfcc0859a2b66a31ea0a 459 Gene3D G3DSA:1.10.287.130 242 306 5.6E-12 T 13-10-2018 RAM_18790 a9002915bb53dfcc0859a2b66a31ea0a 459 Pfam PF00512 His Kinase A (phospho-acceptor) domain 237 300 1.7E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_18790 a9002915bb53dfcc0859a2b66a31ea0a 459 PRINTS PR00344 Bacterial sensor protein C-terminal signature 392 402 1.5E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_18790 a9002915bb53dfcc0859a2b66a31ea0a 459 PRINTS PR00344 Bacterial sensor protein C-terminal signature 374 388 1.5E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_18790 a9002915bb53dfcc0859a2b66a31ea0a 459 PRINTS PR00344 Bacterial sensor protein C-terminal signature 407 425 1.5E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_18790 a9002915bb53dfcc0859a2b66a31ea0a 459 SMART SM00304 182 235 7.3E-11 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_18790 a9002915bb53dfcc0859a2b66a31ea0a 459 SUPERFAMILY SSF47384 219 298 9.42E-14 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RAM_18790 a9002915bb53dfcc0859a2b66a31ea0a 459 SUPERFAMILY SSF55874 306 443 2.49E-29 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_18790 a9002915bb53dfcc0859a2b66a31ea0a 459 Gene3D G3DSA:1.20.1480.50 147 241 7.5E-14 T 13-10-2018 RAM_18790 a9002915bb53dfcc0859a2b66a31ea0a 459 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 343 441 7.7E-20 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_18790 a9002915bb53dfcc0859a2b66a31ea0a 459 Gene3D G3DSA:3.30.565.10 309 446 8.8E-27 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_32495 12b5a364601f7385cc98caec1f7d1b36 97 Pfam PF04456 Protein of unknown function (DUF503) 3 89 9.4E-32 T 13-10-2018 IPR007546 Protein of unknown function DUF503 RAM_32495 12b5a364601f7385cc98caec1f7d1b36 97 Gene3D G3DSA:3.30.70.1120 1 95 5.3E-23 T 13-10-2018 IPR036746 TT1725-like superfamily RAM_32495 12b5a364601f7385cc98caec1f7d1b36 97 SUPERFAMILY SSF103007 1 95 1.44E-30 T 13-10-2018 IPR036746 TT1725-like superfamily RAM_11775 2e16849c0cdeac9f8288b372bc440196 278 Pfam PF13560 Helix-turn-helix domain 5 84 4.6E-16 T 13-10-2018 RAM_11775 2e16849c0cdeac9f8288b372bc440196 278 SUPERFAMILY SSF47413 34 77 2.57E-7 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_11775 2e16849c0cdeac9f8288b372bc440196 278 Gene3D G3DSA:1.10.260.40 26 100 3.1E-6 T 13-10-2018 RAM_11775 2e16849c0cdeac9f8288b372bc440196 278 SMART SM00530 9 81 3.9E-8 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_11775 2e16849c0cdeac9f8288b372bc440196 278 Gene3D G3DSA:3.30.450.180 105 274 8.5E-10 T 13-10-2018 RAM_24995 c9d9fbb1794aa6d462daf15b2e47ea99 299 Pfam PF12705 PD-(D/E)XK nuclease superfamily 26 272 7.4E-35 T 13-10-2018 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type RAM_24995 c9d9fbb1794aa6d462daf15b2e47ea99 299 SUPERFAMILY SSF52980 53 208 2.57E-8 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 RAM_24995 c9d9fbb1794aa6d462daf15b2e47ea99 299 Gene3D G3DSA:3.90.320.10 17 270 3.5E-8 T 13-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal RAM_02105 7f1d5dbb8784c653f0fdc4e3a15c93e5 458 SUPERFAMILY SSF75304 7 445 1.44E-111 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RAM_02105 7f1d5dbb8784c653f0fdc4e3a15c93e5 458 ProSitePatterns PS00571 Amidases signature. 153 184 - T 13-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 RAM_02105 7f1d5dbb8784c653f0fdc4e3a15c93e5 458 Gene3D G3DSA:3.90.1300.10 7 457 4.9E-121 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RAM_02105 7f1d5dbb8784c653f0fdc4e3a15c93e5 458 Pfam PF01425 Amidase 27 436 3.9E-95 T 13-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RAM_08750 ebe85a11737717407c6ea91194199577 477 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 7 473 60.513 T 13-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 RAM_08750 ebe85a11737717407c6ea91194199577 477 PRINTS PR00415 Aconitase family signature 126 139 3.4E-47 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RAM_08750 ebe85a11737717407c6ea91194199577 477 PRINTS PR00415 Aconitase family signature 216 229 3.4E-47 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RAM_08750 ebe85a11737717407c6ea91194199577 477 PRINTS PR00415 Aconitase family signature 89 102 3.4E-47 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RAM_08750 ebe85a11737717407c6ea91194199577 477 PRINTS PR00415 Aconitase family signature 202 215 3.4E-47 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RAM_08750 ebe85a11737717407c6ea91194199577 477 PRINTS PR00415 Aconitase family signature 115 123 3.4E-47 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RAM_08750 ebe85a11737717407c6ea91194199577 477 PRINTS PR00415 Aconitase family signature 293 307 3.4E-47 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RAM_08750 ebe85a11737717407c6ea91194199577 477 PRINTS PR00415 Aconitase family signature 350 361 3.4E-47 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RAM_08750 ebe85a11737717407c6ea91194199577 477 PRINTS PR00415 Aconitase family signature 406 419 3.4E-47 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RAM_08750 ebe85a11737717407c6ea91194199577 477 PRINTS PR00415 Aconitase family signature 140 155 3.4E-47 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RAM_08750 ebe85a11737717407c6ea91194199577 477 Gene3D G3DSA:3.30.499.20 10 293 1.6E-99 T 13-10-2018 RAM_08750 ebe85a11737717407c6ea91194199577 477 Gene3D G3DSA:3.30.499.10 331 477 2.7E-51 T 13-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 RAM_08750 ebe85a11737717407c6ea91194199577 477 Pfam PF00330 Aconitase family (aconitate hydratase) 13 464 4.9E-158 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RAM_08750 ebe85a11737717407c6ea91194199577 477 ProSitePatterns PS00450 Aconitase family signature 1. 346 362 - T 13-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 RAM_08750 ebe85a11737717407c6ea91194199577 477 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 8 466 4.9E-225 T 13-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 RAM_08750 ebe85a11737717407c6ea91194199577 477 SUPERFAMILY SSF53732 8 472 1.03E-163 T 13-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 RAM_08750 ebe85a11737717407c6ea91194199577 477 ProSitePatterns PS01244 Aconitase family signature 2. 406 419 - T 13-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 RAM_27650 860bbcc331d272a8fa395a92d00c8758 328 SUPERFAMILY SSF48179 162 286 2.83E-27 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RAM_27650 860bbcc331d272a8fa395a92d00c8758 328 Gene3D G3DSA:3.40.50.720 1 160 2.5E-41 T 13-10-2018 RAM_27650 860bbcc331d272a8fa395a92d00c8758 328 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 5 161 2.4E-34 T 13-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 RAM_27650 860bbcc331d272a8fa395a92d00c8758 328 Gene3D G3DSA:1.10.1040.10 161 291 1.6E-28 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RAM_27650 860bbcc331d272a8fa395a92d00c8758 328 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 164 283 8.0E-20 T 13-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 RAM_27650 860bbcc331d272a8fa395a92d00c8758 328 SUPERFAMILY SSF51735 4 162 3.78E-35 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_27650 860bbcc331d272a8fa395a92d00c8758 328 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 8 21 - T 13-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 RAM_27650 860bbcc331d272a8fa395a92d00c8758 328 PIRSF PIRSF000103 1 293 2.1E-66 T 13-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 RAM_10020 b949e73e206c37cdc25106aab1614ce1 247 Gene3D G3DSA:3.40.1160.10 6 242 7.4E-76 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RAM_10020 b949e73e206c37cdc25106aab1614ce1 247 PIRSF PIRSF005650 5 245 5.9E-86 T 13-10-2018 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22 RAM_10020 b949e73e206c37cdc25106aab1614ce1 247 SUPERFAMILY SSF53633 9 238 1.14E-70 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RAM_10020 b949e73e206c37cdc25106aab1614ce1 247 Pfam PF00696 Amino acid kinase family 11 218 8.5E-31 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 RAM_10020 b949e73e206c37cdc25106aab1614ce1 247 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 9 239 3.8E-87 T 13-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 RAM_10020 b949e73e206c37cdc25106aab1614ce1 247 Hamap MF_01220_B Uridylate kinase [pyrH]. 7 239 42.294 T 13-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 RAM_34405 81b9ce9af7c1e43178e084c3c8abbac9 980 SUPERFAMILY SSF50249 394 477 2.86E-16 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_34405 81b9ce9af7c1e43178e084c3c8abbac9 980 Pfam PF10150 Ribonuclease E/G family 473 746 4.6E-102 T 13-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 RAM_34405 81b9ce9af7c1e43178e084c3c8abbac9 980 Gene3D G3DSA:1.10.10.2480 28 92 3.8E-8 T 13-10-2018 RAM_34405 81b9ce9af7c1e43178e084c3c8abbac9 980 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 369 773 4.9E-149 T 13-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 RAM_34405 81b9ce9af7c1e43178e084c3c8abbac9 980 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 29 76 1.0E-8 T 13-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal RAM_34405 81b9ce9af7c1e43178e084c3c8abbac9 980 SMART SM00316 392 471 5.3E-7 T 13-10-2018 IPR022967 RNA-binding domain, S1 RAM_34405 81b9ce9af7c1e43178e084c3c8abbac9 980 Gene3D G3DSA:2.40.50.140 387 477 8.2E-28 T 13-10-2018 RAM_08135 2ada22b19ec86e9de2a993448e066b89 323 Gene3D G3DSA:1.25.40.10 239 323 8.0E-10 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_08135 2ada22b19ec86e9de2a993448e066b89 323 SUPERFAMILY SSF52833 51 166 3.39E-33 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RAM_08135 2ada22b19ec86e9de2a993448e066b89 323 Pfam PF00085 Thioredoxin 59 162 7.1E-24 T 13-10-2018 IPR013766 Thioredoxin domain GO:0045454 RAM_08135 2ada22b19ec86e9de2a993448e066b89 323 Pfam PF14561 Tetratricopeptide repeat 243 323 4.5E-18 T 13-10-2018 RAM_08135 2ada22b19ec86e9de2a993448e066b89 323 ProSitePatterns PS00194 Thioredoxin family active site. 81 99 - T 13-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 RAM_08135 2ada22b19ec86e9de2a993448e066b89 323 Gene3D G3DSA:3.40.30.10 52 167 3.2E-29 T 13-10-2018 RAM_23135 e74176e3bf0462396fc947a2bacbab6d 111 Pfam PF05336 L-rhamnose mutarotase 3 105 5.9E-30 T 13-10-2018 IPR008000 Rhamnose/fucose mutarotase GO:0005737|GO:0016857 RAM_23135 e74176e3bf0462396fc947a2bacbab6d 111 Gene3D G3DSA:3.30.70.100 1 94 3.2E-31 T 13-10-2018 RAM_23135 e74176e3bf0462396fc947a2bacbab6d 111 SUPERFAMILY SSF54909 2 106 1.27E-32 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_18615 df5696f7e3b40169d1020f1958e2631e 235 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 11 231 3.1E-45 T 13-10-2018 RAM_18615 df5696f7e3b40169d1020f1958e2631e 235 Gene3D G3DSA:3.40.50.720 3 235 2.1E-66 T 13-10-2018 RAM_18615 df5696f7e3b40169d1020f1958e2631e 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 184 1.3E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18615 df5696f7e3b40169d1020f1958e2631e 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 71 82 1.3E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18615 df5696f7e3b40169d1020f1958e2631e 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 197 217 1.3E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18615 df5696f7e3b40169d1020f1958e2631e 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 1.3E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18615 df5696f7e3b40169d1020f1958e2631e 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 118 134 1.3E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18615 df5696f7e3b40169d1020f1958e2631e 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 1.3E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18615 df5696f7e3b40169d1020f1958e2631e 235 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 124 132 3.1E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18615 df5696f7e3b40169d1020f1958e2631e 235 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 71 82 3.1E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18615 df5696f7e3b40169d1020f1958e2631e 235 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 165 3.1E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18615 df5696f7e3b40169d1020f1958e2631e 235 SUPERFAMILY SSF51735 4 233 1.96E-61 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_23240 021518bd96c69b809dea694c13af3bb8 266 Gene3D G3DSA:3.40.50.150 4 257 1.6E-46 T 13-10-2018 RAM_23240 021518bd96c69b809dea694c13af3bb8 266 SUPERFAMILY SSF53335 9 258 2.15E-45 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_23240 021518bd96c69b809dea694c13af3bb8 266 Pfam PF04072 Leucine carboxyl methyltransferase 6 164 2.0E-36 T 13-10-2018 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp GO:0008168|GO:0032259 RAM_23240 021518bd96c69b809dea694c13af3bb8 266 TIGRFAM TIGR00027 mthyl_TIGR00027: methyltransferase, TIGR00027 family 8 232 3.7E-44 T 13-10-2018 IPR011610 S-adenosyl-L-methionine-dependent methyltransferase, putative GO:0008168 RAM_42835 ff6d1ebb15d9fb29eab5ee8e6428aeb3 431 SUPERFAMILY SSF53383 80 428 6.45E-67 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_42835 ff6d1ebb15d9fb29eab5ee8e6428aeb3 431 Gene3D G3DSA:3.40.640.10 83 422 2.3E-88 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_42835 ff6d1ebb15d9fb29eab5ee8e6428aeb3 431 SUPERFAMILY SSF46785 4 82 1.52E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_42835 ff6d1ebb15d9fb29eab5ee8e6428aeb3 431 Pfam PF00155 Aminotransferase class I and II 109 316 2.7E-7 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RAM_42835 ff6d1ebb15d9fb29eab5ee8e6428aeb3 431 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 72 2.0E-7 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_42835 ff6d1ebb15d9fb29eab5ee8e6428aeb3 431 Gene3D G3DSA:1.10.10.10 4 74 3.6E-12 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_42835 ff6d1ebb15d9fb29eab5ee8e6428aeb3 431 SMART SM00345 15 72 1.4E-4 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_12925 abc883558d314958a59ce9cc58968912 460 Pfam PF09362 Domain of unknown function (DUF1996) 303 438 1.3E-19 T 13-10-2018 IPR018535 Domain of unknown function DUF1996 RAM_24820 51832ab26d2a08dd8c605a2980b9d596 400 Gene3D G3DSA:3.40.630.30 1 133 1.2E-28 T 13-10-2018 RAM_24820 51832ab26d2a08dd8c605a2980b9d596 400 SUPERFAMILY SSF55718 299 400 7.46E-17 T 13-10-2018 IPR036527 SCP2 sterol-binding domain superfamily RAM_24820 51832ab26d2a08dd8c605a2980b9d596 400 Hamap MF_01812 N-acetyltransferase Eis [eis]. 3 400 30.917 T 13-10-2018 IPR022902 N-acetyltransferase Eis RAM_24820 51832ab26d2a08dd8c605a2980b9d596 400 SUPERFAMILY SSF55729 5 298 1.04E-47 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_24820 51832ab26d2a08dd8c605a2980b9d596 400 Pfam PF13527 Acetyltransferase (GNAT) domain 5 130 7.0E-23 T 13-10-2018 RAM_24820 51832ab26d2a08dd8c605a2980b9d596 400 Gene3D G3DSA:3.30.1050.10 297 390 5.3E-22 T 13-10-2018 IPR036527 SCP2 sterol-binding domain superfamily RAM_24820 51832ab26d2a08dd8c605a2980b9d596 400 Gene3D G3DSA:3.40.630.30 134 289 4.0E-35 T 13-10-2018 RAM_24820 51832ab26d2a08dd8c605a2980b9d596 400 Pfam PF13530 Sterol carrier protein domain 178 395 1.4E-48 T 13-10-2018 IPR025559 Enhanced intracellular survival protein domain RAM_47035 b3fa9c8ba2867f51344b3e2baf9d5e3c 149 SUPERFAMILY SSF55729 17 129 3.9E-17 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_47035 b3fa9c8ba2867f51344b3e2baf9d5e3c 149 Gene3D G3DSA:3.40.630.30 4 132 7.3E-28 T 13-10-2018 RAM_47035 b3fa9c8ba2867f51344b3e2baf9d5e3c 149 Pfam PF13508 Acetyltransferase (GNAT) domain 52 125 1.0E-7 T 13-10-2018 IPR000182 GNAT domain RAM_30635 cd8aeeb86d18185c4a1f18b965d7a195 418 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 32 133 3.7E-5 T 13-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain RAM_30635 cd8aeeb86d18185c4a1f18b965d7a195 418 SUPERFAMILY SSF54826 1 133 2.3E-20 T 13-10-2018 RAM_30635 cd8aeeb86d18185c4a1f18b965d7a195 418 SMART SM00922 167 261 5.0E-22 T 13-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal RAM_30635 cd8aeeb86d18185c4a1f18b965d7a195 418 Gene3D G3DSA:3.20.20.120 133 374 3.3E-175 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RAM_30635 cd8aeeb86d18185c4a1f18b965d7a195 418 SUPERFAMILY SSF51604 133 390 3.54E-68 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RAM_30635 cd8aeeb86d18185c4a1f18b965d7a195 418 Pfam PF13378 Enolase C-terminal domain-like 171 381 2.0E-48 T 13-10-2018 IPR029065 Enolase C-terminal domain-like RAM_30635 cd8aeeb86d18185c4a1f18b965d7a195 418 Gene3D G3DSA:3.30.390.10 4 410 3.3E-175 T 13-10-2018 IPR029017 Enolase-like, N-terminal RAM_21940 51115894c26dc3e79164d57f9b1447b2 339 Pfam PF09084 NMT1/THI5 like 50 257 7.4E-18 T 13-10-2018 IPR015168 SsuA/THI5-like RAM_21940 51115894c26dc3e79164d57f9b1447b2 339 Gene3D G3DSA:3.40.190.10 39 327 3.2E-36 T 13-10-2018 RAM_21940 51115894c26dc3e79164d57f9b1447b2 339 Gene3D G3DSA:3.40.190.10 113 219 3.2E-36 T 13-10-2018 RAM_21940 51115894c26dc3e79164d57f9b1447b2 339 SUPERFAMILY SSF53850 58 288 4.73E-27 T 13-10-2018 RAM_24425 aaa8863e8b472570b40d936165e3abff 464 Pfam PF06368 Methylaspartate mutase E chain (MutE) 37 424 1.6E-103 T 13-10-2018 IPR006396 Glutamate mutase epsilon subunit GO:0019670|GO:0050097 KEGG: 00630+5.4.99.1|KEGG: 00660+5.4.99.1|MetaCyc: PWY-5087|MetaCyc: PWY-5103|MetaCyc: PWY-6728 RAM_24425 aaa8863e8b472570b40d936165e3abff 464 SUPERFAMILY SSF51703 32 429 7.46E-116 T 13-10-2018 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 RAM_24425 aaa8863e8b472570b40d936165e3abff 464 Gene3D G3DSA:3.20.20.240 26 393 2.8E-112 T 13-10-2018 RAM_24425 aaa8863e8b472570b40d936165e3abff 464 PIRSF PIRSF001495 27 452 4.0E-106 T 13-10-2018 IPR006396 Glutamate mutase epsilon subunit GO:0019670|GO:0050097 KEGG: 00630+5.4.99.1|KEGG: 00660+5.4.99.1|MetaCyc: PWY-5087|MetaCyc: PWY-5103|MetaCyc: PWY-6728 RAM_30865 4f37474d680b46d1e4602d5230c4d11d 417 Pfam PF05426 Alginate lyase 73 356 1.5E-79 T 13-10-2018 IPR008397 Alginate lyase domain GO:0016829|GO:0042597 KEGG: 00051+4.2.2.3|MetaCyc: PWY-6986 RAM_30865 4f37474d680b46d1e4602d5230c4d11d 417 SUPERFAMILY SSF48230 79 353 3.66E-54 T 13-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 RAM_30865 4f37474d680b46d1e4602d5230c4d11d 417 Gene3D G3DSA:1.50.10.100 26 395 2.3E-122 T 13-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 RAM_38835 f07a835770da27da4662c9677d19e271 471 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 229 236 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 RAM_38835 f07a835770da27da4662c9677d19e271 471 Gene3D G3DSA:3.40.605.10 2 451 5.0E-187 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RAM_38835 f07a835770da27da4662c9677d19e271 471 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 257 268 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 RAM_38835 f07a835770da27da4662c9677d19e271 471 SUPERFAMILY SSF53720 2 462 9.82E-166 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RAM_38835 f07a835770da27da4662c9677d19e271 471 Gene3D G3DSA:3.40.309.10 234 427 5.0E-187 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RAM_38835 f07a835770da27da4662c9677d19e271 471 Pfam PF00171 Aldehyde dehydrogenase family 2 457 4.5E-175 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RAM_24275 c25caa2d60197dd0a101396a5e4debca 1608 SUPERFAMILY SSF52777 558 753 4.67E-43 T 13-10-2018 RAM_24275 c25caa2d60197dd0a101396a5e4debca 1608 SMART SM00823 Phosphopantetheine attachment site 469 541 5.7E-4 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_24275 c25caa2d60197dd0a101396a5e4debca 1608 SMART SM00823 Phosphopantetheine attachment site 1522 1591 5.2E-6 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_24275 c25caa2d60197dd0a101396a5e4debca 1608 Gene3D G3DSA:3.30.559.30 187 432 2.5E-110 T 13-10-2018 RAM_24275 c25caa2d60197dd0a101396a5e4debca 1608 SUPERFAMILY SSF47336 463 573 1.7E-14 T 13-10-2018 IPR036736 ACP-like superfamily RAM_24275 c25caa2d60197dd0a101396a5e4debca 1608 Gene3D G3DSA:1.10.1200.10 1511 1592 1.3E-28 T 13-10-2018 IPR036736 ACP-like superfamily RAM_24275 c25caa2d60197dd0a101396a5e4debca 1608 Gene3D G3DSA:3.30.559.30 737 983 1.1E-133 T 13-10-2018 RAM_24275 c25caa2d60197dd0a101396a5e4debca 1608 Pfam PF00668 Condensation domain 12 432 4.1E-56 T 13-10-2018 IPR001242 Condensation domain RAM_24275 c25caa2d60197dd0a101396a5e4debca 1608 Pfam PF00668 Condensation domain 561 994 4.8E-83 T 13-10-2018 IPR001242 Condensation domain RAM_24275 c25caa2d60197dd0a101396a5e4debca 1608 Gene3D G3DSA:3.30.559.10 10 373 2.5E-110 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_24275 c25caa2d60197dd0a101396a5e4debca 1608 SUPERFAMILY SSF52777 12 183 6.23E-39 T 13-10-2018 RAM_24275 c25caa2d60197dd0a101396a5e4debca 1608 SUPERFAMILY SSF47336 1515 1588 4.84E-20 T 13-10-2018 IPR036736 ACP-like superfamily RAM_24275 c25caa2d60197dd0a101396a5e4debca 1608 SUPERFAMILY SSF52777 191 430 4.11E-49 T 13-10-2018 RAM_24275 c25caa2d60197dd0a101396a5e4debca 1608 Gene3D G3DSA:1.10.1200.10 452 543 6.5E-23 T 13-10-2018 IPR036736 ACP-like superfamily RAM_24275 c25caa2d60197dd0a101396a5e4debca 1608 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1039 1441 3.8E-119 T 13-10-2018 IPR010071 Amino acid adenylation domain RAM_24275 c25caa2d60197dd0a101396a5e4debca 1608 SUPERFAMILY SSF52777 739 985 2.45E-58 T 13-10-2018 RAM_24275 c25caa2d60197dd0a101396a5e4debca 1608 Pfam PF00501 AMP-binding enzyme 1022 1417 1.1E-87 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_24275 c25caa2d60197dd0a101396a5e4debca 1608 SUPERFAMILY SSF56801 976 1534 3.92E-148 T 13-10-2018 RAM_24275 c25caa2d60197dd0a101396a5e4debca 1608 ProSitePatterns PS00012 Phosphopantetheine attachment site. 493 508 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_24275 c25caa2d60197dd0a101396a5e4debca 1608 Gene3D G3DSA:3.40.50.12780 1008 1409 3.7E-123 T 13-10-2018 RAM_24275 c25caa2d60197dd0a101396a5e4debca 1608 Gene3D G3DSA:3.30.559.10 562 926 1.1E-133 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_24275 c25caa2d60197dd0a101396a5e4debca 1608 Pfam PF13193 AMP-binding enzyme C-terminal domain 1425 1496 8.3E-12 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_24275 c25caa2d60197dd0a101396a5e4debca 1608 Pfam PF00550 Phosphopantetheine attachment site 1524 1587 1.4E-12 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_24275 c25caa2d60197dd0a101396a5e4debca 1608 Pfam PF00550 Phosphopantetheine attachment site 471 536 6.0E-9 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_24275 c25caa2d60197dd0a101396a5e4debca 1608 Gene3D G3DSA:3.30.300.30 1412 1510 2.8E-30 T 13-10-2018 RAM_24275 c25caa2d60197dd0a101396a5e4debca 1608 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1156 1167 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_24275 c25caa2d60197dd0a101396a5e4debca 1608 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1546 1561 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_14120 3111e6f8772063275da4a5c1badd6c87 632 Gene3D G3DSA:4.10.860.10 186 226 1.5E-7 T 13-10-2018 RAM_14120 3111e6f8772063275da4a5c1badd6c87 632 SUPERFAMILY SSF46600 175 228 3.01E-14 T 13-10-2018 IPR036876 UVR domain superfamily RAM_14120 3111e6f8772063275da4a5c1badd6c87 632 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 383 552 8.1E-48 T 13-10-2018 IPR001162 UvrC family homology region RAM_14120 3111e6f8772063275da4a5c1badd6c87 632 Pfam PF14520 Helix-hairpin-helix domain 567 618 2.3E-9 T 13-10-2018 RAM_14120 3111e6f8772063275da4a5c1badd6c87 632 Gene3D G3DSA:1.10.150.20 560 619 1.2E-20 T 13-10-2018 RAM_14120 3111e6f8772063275da4a5c1badd6c87 632 Gene3D G3DSA:3.30.420.340 376 559 8.7E-50 T 13-10-2018 IPR038476 UvrC homology region 2 superfamily RAM_14120 3111e6f8772063275da4a5c1badd6c87 632 Hamap MF_00203 UvrABC system protein C [uvrC]. 1 617 28.578 T 13-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 RAM_14120 3111e6f8772063275da4a5c1badd6c87 632 SUPERFAMILY SSF47781 507 619 1.87E-23 T 13-10-2018 IPR010994 RuvA domain 2-like RAM_14120 3111e6f8772063275da4a5c1badd6c87 632 SMART SM00465 1 80 6.9E-17 T 13-10-2018 IPR000305 GIY-YIG endonuclease RAM_14120 3111e6f8772063275da4a5c1badd6c87 632 Gene3D G3DSA:3.40.1440.10 1 84 4.6E-25 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 RAM_14120 3111e6f8772063275da4a5c1badd6c87 632 Pfam PF01541 GIY-YIG catalytic domain 1 73 2.1E-9 T 13-10-2018 IPR000305 GIY-YIG endonuclease RAM_14120 3111e6f8772063275da4a5c1badd6c87 632 Pfam PF02151 UvrB/uvrC motif 190 223 2.9E-9 T 13-10-2018 IPR001943 UVR domain GO:0005515 RAM_14120 3111e6f8772063275da4a5c1badd6c87 632 SUPERFAMILY SSF82771 1 82 7.45E-21 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 RAM_14120 3111e6f8772063275da4a5c1badd6c87 632 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 1 599 3.1E-147 T 13-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 RAM_14120 3111e6f8772063275da4a5c1badd6c87 632 SMART SM00278 566 585 16.0 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RAM_14120 3111e6f8772063275da4a5c1badd6c87 632 SMART SM00278 598 617 0.15 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RAM_40905 1a82d530c6c00137ead8c1d5eed30ad0 361 SUPERFAMILY SSF52540 3 240 4.17E-74 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_40905 1a82d530c6c00137ead8c1d5eed30ad0 361 Gene3D G3DSA:3.40.50.300 1 246 8.9E-74 T 13-10-2018 RAM_40905 1a82d530c6c00137ead8c1d5eed30ad0 361 SMART SM00382 28 214 1.9E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_40905 1a82d530c6c00137ead8c1d5eed30ad0 361 Pfam PF00005 ABC transporter 20 164 6.1E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_40905 1a82d530c6c00137ead8c1d5eed30ad0 361 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_35550 be30bd16c56f281582fb70ed50ba4ec2 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 3.1E-23 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_35550 be30bd16c56f281582fb70ed50ba4ec2 292 Gene3D G3DSA:3.40.190.290 92 292 3.9E-29 T 13-10-2018 RAM_35550 be30bd16c56f281582fb70ed50ba4ec2 292 SUPERFAMILY SSF46785 3 82 8.82E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_35550 be30bd16c56f281582fb70ed50ba4ec2 292 Pfam PF03466 LysR substrate binding domain 88 289 1.5E-30 T 13-10-2018 IPR005119 LysR, substrate-binding RAM_35550 be30bd16c56f281582fb70ed50ba4ec2 292 Gene3D G3DSA:1.10.10.10 1 85 5.4E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_35550 be30bd16c56f281582fb70ed50ba4ec2 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 2.6E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_35550 be30bd16c56f281582fb70ed50ba4ec2 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 2.6E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_35550 be30bd16c56f281582fb70ed50ba4ec2 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 2.6E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_35550 be30bd16c56f281582fb70ed50ba4ec2 292 SUPERFAMILY SSF53850 91 290 2.17E-27 T 13-10-2018 RAM_18325 f9c0fc3de54bf811e2db3b8e6e68e69c 155 Gene3D G3DSA:2.60.120.10 2 152 3.5E-36 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_18325 f9c0fc3de54bf811e2db3b8e6e68e69c 155 SUPERFAMILY SSF51182 10 121 3.85E-24 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RAM_18325 f9c0fc3de54bf811e2db3b8e6e68e69c 155 Pfam PF07883 Cupin domain 40 105 2.5E-15 T 13-10-2018 IPR013096 Cupin 2, conserved barrel RAM_42560 17e5450623784ad5c394da4b224b1945 202 Pfam PF01427 D-ala-D-ala dipeptidase 4 201 9.1E-58 T 13-10-2018 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 RAM_42560 17e5450623784ad5c394da4b224b1945 202 SUPERFAMILY SSF55166 2 201 4.71E-67 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 RAM_42560 17e5450623784ad5c394da4b224b1945 202 PIRSF PIRSF026671 1 202 1.7E-51 T 13-10-2018 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 RAM_42560 17e5450623784ad5c394da4b224b1945 202 Hamap MF_01924 D-alanyl-D-alanine dipeptidase [ddpX]. 4 200 28.348 T 13-10-2018 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 RAM_42560 17e5450623784ad5c394da4b224b1945 202 Gene3D G3DSA:3.30.1380.10 1 202 3.7E-61 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 RAM_45070 11e245ff75ba6f8e9b542f86a8cb975b 71 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 11 57 1.1E-8 T 13-10-2018 IPR010093 SinI-like, DNA-binding domain GO:0003677 RAM_45070 11e245ff75ba6f8e9b542f86a8cb975b 71 Pfam PF12728 Helix-turn-helix domain 10 57 1.2E-9 T 13-10-2018 RAM_36585 3b6b839622975edebef684d5875f9edf 254 Gene3D G3DSA:1.10.12.10 199 253 1.2E-10 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal RAM_36585 3b6b839622975edebef684d5875f9edf 254 SUPERFAMILY SSF52096 9 251 3.78E-65 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_36585 3b6b839622975edebef684d5875f9edf 254 Gene3D G3DSA:3.90.226.10 6 198 5.0E-59 T 13-10-2018 RAM_36585 3b6b839622975edebef684d5875f9edf 254 Pfam PF00378 Enoyl-CoA hydratase/isomerase 12 249 9.1E-52 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RAM_36585 3b6b839622975edebef684d5875f9edf 254 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 99 119 - T 13-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 RAM_23940 8c9f1d41c8a805b201ab4747c1b9eddf 356 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 63 2.4E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_23940 8c9f1d41c8a805b201ab4747c1b9eddf 356 SUPERFAMILY SSF46689 4 71 4.0E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_23940 8c9f1d41c8a805b201ab4747c1b9eddf 356 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 1.3E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_23940 8c9f1d41c8a805b201ab4747c1b9eddf 356 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 1.3E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_23940 8c9f1d41c8a805b201ab4747c1b9eddf 356 Gene3D G3DSA:1.10.357.10 1 202 2.3E-19 T 13-10-2018 RAM_15695 913ecdbd2b9e4e6117b96ad94ca0a326 283 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 76 280 5.7E-67 T 13-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 RAM_15695 913ecdbd2b9e4e6117b96ad94ca0a326 283 Gene3D G3DSA:3.90.850.10 69 282 1.0E-78 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 RAM_15695 913ecdbd2b9e4e6117b96ad94ca0a326 283 SUPERFAMILY SSF56529 64 280 1.28E-70 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 RAM_17950 f0a0930715d4d5e4b1d35388b38e7757 496 Gene3D G3DSA:2.80.10.50 337 496 8.9E-58 T 13-10-2018 RAM_17950 f0a0930715d4d5e4b1d35388b38e7757 496 SUPERFAMILY SSF110221 336 495 1.03E-45 T 13-10-2018 IPR036195 Alpha-L-arabinofuranosidase B, arabinose-binding domain superfamily GO:0046373|GO:0046556 RAM_17950 f0a0930715d4d5e4b1d35388b38e7757 496 SUPERFAMILY SSF49899 22 337 4.91E-100 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily RAM_17950 f0a0930715d4d5e4b1d35388b38e7757 496 Pfam PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain 349 490 2.2E-51 T 13-10-2018 IPR007934 Alpha-L-arabinofuranosidase B, arabinose-binding domain GO:0046373|GO:0046556 RAM_17950 f0a0930715d4d5e4b1d35388b38e7757 496 Pfam PF09206 Alpha-L-arabinofuranosidase B, catalytic 23 335 2.9E-131 T 13-10-2018 IPR015289 Alpha-L-arabinofuranosidase B, catalytic GO:0031221|GO:0046556 KEGG: 00520+3.2.1.55 RAM_17950 f0a0930715d4d5e4b1d35388b38e7757 496 Gene3D G3DSA:2.60.120.200 21 336 2.3E-130 T 13-10-2018 RAM_42705 ebfa4ddea682d7051c043d6f41ae1bbc 138 ProSitePatterns PS01327 Large-conductance mechanosensitive channels mscL family signature. 11 24 - T 13-10-2018 IPR019823 Large-conductance mechanosensitive channel, conserved site RAM_42705 ebfa4ddea682d7051c043d6f41ae1bbc 138 Gene3D G3DSA:1.10.1200.120 1 130 7.3E-39 T 13-10-2018 IPR036019 Gated mechanosensitive channel RAM_42705 ebfa4ddea682d7051c043d6f41ae1bbc 138 TIGRFAM TIGR00220 mscL: large conductance mechanosensitive channel protein 2 129 3.5E-28 T 13-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 RAM_42705 ebfa4ddea682d7051c043d6f41ae1bbc 138 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 89 98 1.7E-7 T 13-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 RAM_42705 ebfa4ddea682d7051c043d6f41ae1bbc 138 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 79 87 1.7E-7 T 13-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 RAM_42705 ebfa4ddea682d7051c043d6f41ae1bbc 138 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 4 18 1.7E-7 T 13-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 RAM_42705 ebfa4ddea682d7051c043d6f41ae1bbc 138 SUPERFAMILY SSF81330 10 123 2.09E-27 T 13-10-2018 IPR036019 Gated mechanosensitive channel RAM_42705 ebfa4ddea682d7051c043d6f41ae1bbc 138 Hamap MF_00115 Large-conductance mechanosensitive channel [mscL]. 1 128 20.76 T 13-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 RAM_42705 ebfa4ddea682d7051c043d6f41ae1bbc 138 Pfam PF01741 Large-conductance mechanosensitive channel, MscL 2 126 3.6E-37 T 13-10-2018 IPR037673 Large-conductance mechanosensitive channel/anditomin synthesis protein L RAM_20055 89deac2aec20d009ef729cd541161967 387 PRINTS PR00412 Epoxide hydrolase signature 356 378 6.9E-12 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_20055 89deac2aec20d009ef729cd541161967 387 PRINTS PR00412 Epoxide hydrolase signature 324 340 6.9E-12 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_20055 89deac2aec20d009ef729cd541161967 387 PRINTS PR00412 Epoxide hydrolase signature 134 149 6.9E-12 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_20055 89deac2aec20d009ef729cd541161967 387 PRINTS PR00412 Epoxide hydrolase signature 108 126 6.9E-12 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_20055 89deac2aec20d009ef729cd541161967 387 PRINTS PR00412 Epoxide hydrolase signature 179 192 6.9E-12 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_20055 89deac2aec20d009ef729cd541161967 387 PIRSF PIRSF001112 2 384 3.0E-108 T 13-10-2018 IPR016292 Epoxide hydrolase GO:0033961 Reactome: R-HSA-211945 RAM_20055 89deac2aec20d009ef729cd541161967 387 SUPERFAMILY SSF53474 3 379 1.14E-93 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_20055 89deac2aec20d009ef729cd541161967 387 Pfam PF06441 Epoxide hydrolase N terminus 6 117 3.3E-31 T 13-10-2018 IPR010497 Epoxide hydrolase, N-terminal Reactome: R-HSA-211945 RAM_20055 89deac2aec20d009ef729cd541161967 387 Gene3D G3DSA:3.40.50.1820 2 385 1.2E-129 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_03155 8946089cba314005a91a04a986406c20 4735 SMART SM00823 Phosphopantetheine attachment site 546 614 8.1E-23 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_03155 8946089cba314005a91a04a986406c20 4735 SMART SM00823 Phosphopantetheine attachment site 2105 2177 2.1E-27 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_03155 8946089cba314005a91a04a986406c20 4735 SMART SM00823 Phosphopantetheine attachment site 4581 4653 1.7E-26 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_03155 8946089cba314005a91a04a986406c20 4735 SMART SM00823 Phosphopantetheine attachment site 3082 3154 1.8E-28 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_03155 8946089cba314005a91a04a986406c20 4735 Gene3D G3DSA:3.10.129.110 1613 1694 1.8E-5 T 13-10-2018 RAM_03155 8946089cba314005a91a04a986406c20 4735 SUPERFAMILY SSF52151 1142 1423 3.92E-66 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RAM_03155 8946089cba314005a91a04a986406c20 4735 SUPERFAMILY SSF51735 4304 4543 1.15E-33 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_03155 8946089cba314005a91a04a986406c20 4735 SUPERFAMILY SSF47336 541 647 4.06E-22 T 13-10-2018 IPR036736 ACP-like superfamily RAM_03155 8946089cba314005a91a04a986406c20 4735 SUPERFAMILY SSF47336 3077 3187 8.11E-25 T 13-10-2018 IPR036736 ACP-like superfamily RAM_03155 8946089cba314005a91a04a986406c20 4735 Gene3D G3DSA:1.10.1200.10 3070 3155 1.9E-27 T 13-10-2018 IPR036736 ACP-like superfamily RAM_03155 8946089cba314005a91a04a986406c20 4735 Gene3D G3DSA:1.10.1200.10 4560 4653 4.8E-32 T 13-10-2018 IPR036736 ACP-like superfamily RAM_03155 8946089cba314005a91a04a986406c20 4735 SUPERFAMILY SSF56801 8 507 7.2E-154 T 13-10-2018 RAM_03155 8946089cba314005a91a04a986406c20 4735 Pfam PF00550 Phosphopantetheine attachment site 4584 4649 9.0E-10 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_03155 8946089cba314005a91a04a986406c20 4735 Pfam PF00550 Phosphopantetheine attachment site 2107 2173 2.5E-10 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_03155 8946089cba314005a91a04a986406c20 4735 Pfam PF00550 Phosphopantetheine attachment site 548 610 4.9E-10 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_03155 8946089cba314005a91a04a986406c20 4735 Pfam PF00550 Phosphopantetheine attachment site 3084 3150 5.4E-12 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_03155 8946089cba314005a91a04a986406c20 4735 SUPERFAMILY SSF51735 1701 1817 4.72E-20 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_03155 8946089cba314005a91a04a986406c20 4735 ProSitePatterns PS00012 Phosphopantetheine attachment site. 2132 2147 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_03155 8946089cba314005a91a04a986406c20 4735 Gene3D G3DSA:3.10.129.10 1483 1605 2.9E-12 T 13-10-2018 RAM_03155 8946089cba314005a91a04a986406c20 4735 SMART SM00826 1489 1634 1.5E-24 T 13-10-2018 IPR020807 Polyketide synthase, dehydratase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_03155 8946089cba314005a91a04a986406c20 4735 SUPERFAMILY SSF55048 2840 2901 2.62E-12 T 13-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding RAM_03155 8946089cba314005a91a04a986406c20 4735 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 3335 3351 - T 13-10-2018 IPR018201 Beta-ketoacyl synthase, active site RAM_03155 8946089cba314005a91a04a986406c20 4735 Pfam PF00501 AMP-binding enzyme 15 411 2.6E-110 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_03155 8946089cba314005a91a04a986406c20 4735 SUPERFAMILY SSF53901 629 994 2.88E-104 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_03155 8946089cba314005a91a04a986406c20 4735 Gene3D G3DSA:3.30.70.3290 3616 4034 1.2E-153 T 13-10-2018 RAM_03155 8946089cba314005a91a04a986406c20 4735 SMART SM00825 Beta-ketoacyl synthase 2197 2620 5.2E-214 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RAM_03155 8946089cba314005a91a04a986406c20 4735 SMART SM00825 Beta-ketoacyl synthase 3174 3598 6.1E-218 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RAM_03155 8946089cba314005a91a04a986406c20 4735 SMART SM00825 Beta-ketoacyl synthase 634 1056 3.6E-221 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RAM_03155 8946089cba314005a91a04a986406c20 4735 ProSitePatterns PS00012 Phosphopantetheine attachment site. 4608 4623 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_03155 8946089cba314005a91a04a986406c20 4735 Pfam PF13193 AMP-binding enzyme C-terminal domain 420 494 1.3E-17 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_03155 8946089cba314005a91a04a986406c20 4735 Gene3D G3DSA:3.30.70.3290 2640 3055 8.1E-153 T 13-10-2018 RAM_03155 8946089cba314005a91a04a986406c20 4735 Pfam PF08659 KR domain 1829 2003 2.7E-55 T 13-10-2018 IPR013968 Polyketide synthase, ketoreductase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_03155 8946089cba314005a91a04a986406c20 4735 Pfam PF08659 KR domain 4307 4473 4.1E-43 T 13-10-2018 IPR013968 Polyketide synthase, ketoreductase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_03155 8946089cba314005a91a04a986406c20 4735 SUPERFAMILY SSF47336 2101 2210 1.31E-22 T 13-10-2018 IPR036736 ACP-like superfamily RAM_03155 8946089cba314005a91a04a986406c20 4735 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 3551 3642 4.2E-11 T 13-10-2018 IPR032821 Ketoacyl-synthetase, C-terminal extension Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_03155 8946089cba314005a91a04a986406c20 4735 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 2570 2685 2.2E-15 T 13-10-2018 IPR032821 Ketoacyl-synthetase, C-terminal extension Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_03155 8946089cba314005a91a04a986406c20 4735 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 1006 1103 2.5E-12 T 13-10-2018 IPR032821 Ketoacyl-synthetase, C-terminal extension Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_03155 8946089cba314005a91a04a986406c20 4735 SUPERFAMILY SSF52151 3692 3977 3.66E-67 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RAM_03155 8946089cba314005a91a04a986406c20 4735 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 1146 1433 2.6E-112 T 13-10-2018 IPR020801 Polyketide synthase, acyl transferase domain RAM_03155 8946089cba314005a91a04a986406c20 4735 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 3696 3988 1.4E-115 T 13-10-2018 IPR020801 Polyketide synthase, acyl transferase domain RAM_03155 8946089cba314005a91a04a986406c20 4735 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 2717 3006 2.7E-119 T 13-10-2018 IPR020801 Polyketide synthase, acyl transferase domain RAM_03155 8946089cba314005a91a04a986406c20 4735 Gene3D G3DSA:3.40.50.720 1699 2077 4.1E-113 T 13-10-2018 RAM_03155 8946089cba314005a91a04a986406c20 4735 SUPERFAMILY SSF52151 2713 3002 4.97E-69 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RAM_03155 8946089cba314005a91a04a986406c20 4735 SUPERFAMILY SSF47336 4573 4658 4.06E-19 T 13-10-2018 IPR036736 ACP-like superfamily RAM_03155 8946089cba314005a91a04a986406c20 4735 SUPERFAMILY SSF53901 3170 3542 8.84E-103 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_03155 8946089cba314005a91a04a986406c20 4735 SMART SM01294 4582 4649 4.8E-4 T 13-10-2018 RAM_03155 8946089cba314005a91a04a986406c20 4735 Pfam PF00698 Acyl transferase domain 1144 1452 5.1E-82 T 13-10-2018 IPR014043 Acyl transferase RAM_03155 8946089cba314005a91a04a986406c20 4735 Pfam PF00698 Acyl transferase domain 2717 3024 3.7E-53 T 13-10-2018 IPR014043 Acyl transferase RAM_03155 8946089cba314005a91a04a986406c20 4735 Pfam PF00698 Acyl transferase domain 3694 4007 2.7E-83 T 13-10-2018 IPR014043 Acyl transferase RAM_03155 8946089cba314005a91a04a986406c20 4735 Gene3D G3DSA:3.40.47.10 3164 3615 3.0E-186 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_03155 8946089cba314005a91a04a986406c20 4735 Gene3D G3DSA:3.40.47.10 2187 2639 2.7E-186 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_03155 8946089cba314005a91a04a986406c20 4735 SUPERFAMILY SSF55048 1267 1329 1.44E-11 T 13-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding RAM_03155 8946089cba314005a91a04a986406c20 4735 Gene3D G3DSA:3.40.47.10 630 1061 6.2E-186 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_03155 8946089cba314005a91a04a986406c20 4735 SUPERFAMILY SSF51735 4096 4295 5.42E-44 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_03155 8946089cba314005a91a04a986406c20 4735 Gene3D G3DSA:3.30.300.30 405 506 1.7E-26 T 13-10-2018 RAM_03155 8946089cba314005a91a04a986406c20 4735 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 3430 3545 1.2E-44 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal RAM_03155 8946089cba314005a91a04a986406c20 4735 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 2452 2567 6.2E-45 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal RAM_03155 8946089cba314005a91a04a986406c20 4735 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 888 1003 1.3E-45 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal RAM_03155 8946089cba314005a91a04a986406c20 4735 SUPERFAMILY SSF53901 2192 2616 3.38E-100 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_03155 8946089cba314005a91a04a986406c20 4735 Gene3D G3DSA:1.10.1200.10 528 616 8.6E-26 T 13-10-2018 IPR036736 ACP-like superfamily RAM_03155 8946089cba314005a91a04a986406c20 4735 Gene3D G3DSA:1.10.1200.10 2087 2180 1.9E-33 T 13-10-2018 IPR036736 ACP-like superfamily RAM_03155 8946089cba314005a91a04a986406c20 4735 SUPERFAMILY SSF55048 3818 3883 1.7E-13 T 13-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding RAM_03155 8946089cba314005a91a04a986406c20 4735 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 793 809 - T 13-10-2018 IPR018201 Beta-ketoacyl synthase, active site RAM_03155 8946089cba314005a91a04a986406c20 4735 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 632 880 2.5E-89 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal RAM_03155 8946089cba314005a91a04a986406c20 4735 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 2195 2444 3.2E-89 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal RAM_03155 8946089cba314005a91a04a986406c20 4735 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 3172 3422 1.1E-90 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal RAM_03155 8946089cba314005a91a04a986406c20 4735 Gene3D G3DSA:3.40.50.720 4047 4548 2.1E-140 T 13-10-2018 RAM_03155 8946089cba314005a91a04a986406c20 4735 Gene3D G3DSA:3.30.70.3290 1069 1479 7.0E-146 T 13-10-2018 RAM_03155 8946089cba314005a91a04a986406c20 4735 Gene3D G3DSA:3.40.366.10 1144 1436 7.0E-146 T 13-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 RAM_03155 8946089cba314005a91a04a986406c20 4735 Gene3D G3DSA:3.40.366.10 2715 3009 8.1E-153 T 13-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 RAM_03155 8946089cba314005a91a04a986406c20 4735 Gene3D G3DSA:3.40.366.10 3694 3991 1.2E-153 T 13-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 RAM_03155 8946089cba314005a91a04a986406c20 4735 Gene3D G3DSA:3.40.50.12780 5 404 1.5E-120 T 13-10-2018 RAM_03155 8946089cba314005a91a04a986406c20 4735 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 4307 4475 2.1E-27 T 13-10-2018 RAM_03155 8946089cba314005a91a04a986406c20 4735 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 1829 2005 3.7E-57 T 13-10-2018 RAM_03155 8946089cba314005a91a04a986406c20 4735 SUPERFAMILY SSF51735 1827 2052 5.54E-43 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_03155 8946089cba314005a91a04a986406c20 4735 ProSitePatterns PS00455 Putative AMP-binding domain signature. 164 175 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_03155 8946089cba314005a91a04a986406c20 4735 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 2357 2373 - T 13-10-2018 IPR018201 Beta-ketoacyl synthase, active site RAM_18740 e283319a57012c495f87a9f68865cd69 2684 Gene3D G3DSA:3.40.47.10 6 439 3.5E-160 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_18740 e283319a57012c495f87a9f68865cd69 2684 SUPERFAMILY SSF47336 889 985 2.36E-18 T 13-10-2018 IPR036736 ACP-like superfamily RAM_18740 e283319a57012c495f87a9f68865cd69 2684 Pfam PF12697 Alpha/beta hydrolase family 2017 2239 1.5E-16 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_18740 e283319a57012c495f87a9f68865cd69 2684 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1444 1837 3.2E-130 T 13-10-2018 IPR010071 Amino acid adenylation domain RAM_18740 e283319a57012c495f87a9f68865cd69 2684 Pfam PF13193 AMP-binding enzyme C-terminal domain 1821 1896 1.2E-12 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_18740 e283319a57012c495f87a9f68865cd69 2684 SUPERFAMILY SSF56801 1383 1934 3.01E-155 T 13-10-2018 RAM_18740 e283319a57012c495f87a9f68865cd69 2684 Gene3D G3DSA:3.30.300.30 1807 1910 2.6E-35 T 13-10-2018 RAM_18740 e283319a57012c495f87a9f68865cd69 2684 Gene3D G3DSA:3.30.559.10 974 1329 6.5E-140 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_18740 e283319a57012c495f87a9f68865cd69 2684 Pfam PF00550 Phosphopantetheine attachment site 1924 1982 2.3E-9 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_18740 e283319a57012c495f87a9f68865cd69 2684 Pfam PF00550 Phosphopantetheine attachment site 891 952 1.2E-16 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_18740 e283319a57012c495f87a9f68865cd69 2684 SUPERFAMILY SSF52151 526 803 3.66E-66 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RAM_18740 e283319a57012c495f87a9f68865cd69 2684 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 173 189 - T 13-10-2018 IPR018201 Beta-ketoacyl synthase, active site RAM_18740 e283319a57012c495f87a9f68865cd69 2684 Gene3D G3DSA:1.10.1200.10 1911 1985 2.0E-19 T 13-10-2018 IPR036736 ACP-like superfamily RAM_18740 e283319a57012c495f87a9f68865cd69 2684 Gene3D G3DSA:1.10.1200.10 877 959 2.2E-23 T 13-10-2018 IPR036736 ACP-like superfamily RAM_18740 e283319a57012c495f87a9f68865cd69 2684 Pfam PF00698 Acyl transferase domain 528 802 2.5E-59 T 13-10-2018 IPR014043 Acyl transferase RAM_18740 e283319a57012c495f87a9f68865cd69 2684 SUPERFAMILY SSF55048 651 712 1.57E-10 T 13-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding RAM_18740 e283319a57012c495f87a9f68865cd69 2684 Gene3D G3DSA:3.40.50.1820 1989 2243 8.9E-37 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_18740 e283319a57012c495f87a9f68865cd69 2684 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1562 1573 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_18740 e283319a57012c495f87a9f68865cd69 2684 SUPERFAMILY SSF52777 1146 1386 2.67E-65 T 13-10-2018 RAM_18740 e283319a57012c495f87a9f68865cd69 2684 SMART SM00823 Phosphopantetheine attachment site 889 958 6.6E-11 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_18740 e283319a57012c495f87a9f68865cd69 2684 SMART SM00823 Phosphopantetheine attachment site 1921 1986 0.0077 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_18740 e283319a57012c495f87a9f68865cd69 2684 SUPERFAMILY SSF103473 2258 2655 2.62E-42 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_18740 e283319a57012c495f87a9f68865cd69 2684 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 529 815 3.7E-103 T 13-10-2018 IPR020801 Polyketide synthase, acyl transferase domain RAM_18740 e283319a57012c495f87a9f68865cd69 2684 ProSitePatterns PS00012 Phosphopantetheine attachment site. 913 928 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_18740 e283319a57012c495f87a9f68865cd69 2684 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 10 260 2.9E-67 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal RAM_18740 e283319a57012c495f87a9f68865cd69 2684 Gene3D G3DSA:3.40.366.10 527 821 2.9E-139 T 13-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 RAM_18740 e283319a57012c495f87a9f68865cd69 2684 Gene3D G3DSA:3.30.70.3290 452 866 2.9E-139 T 13-10-2018 RAM_18740 e283319a57012c495f87a9f68865cd69 2684 Pfam PF07690 Major Facilitator Superfamily 2263 2600 3.2E-27 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_18740 e283319a57012c495f87a9f68865cd69 2684 Pfam PF00501 AMP-binding enzyme 1424 1813 4.3E-97 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_18740 e283319a57012c495f87a9f68865cd69 2684 Pfam PF00668 Condensation domain 972 1402 1.6E-98 T 13-10-2018 IPR001242 Condensation domain RAM_18740 e283319a57012c495f87a9f68865cd69 2684 Gene3D G3DSA:1.20.1250.20 2254 2649 2.2E-34 T 13-10-2018 RAM_18740 e283319a57012c495f87a9f68865cd69 2684 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 269 386 2.3E-39 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal RAM_18740 e283319a57012c495f87a9f68865cd69 2684 SUPERFAMILY SSF53901 7 435 1.42E-84 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_18740 e283319a57012c495f87a9f68865cd69 2684 SMART SM00824 Thioesterase 2010 2158 0.0077 T 13-10-2018 IPR020802 Polyketide synthase, thioesterase domain GO:0009058|GO:0016788 RAM_18740 e283319a57012c495f87a9f68865cd69 2684 Gene3D G3DSA:3.40.50.12780 1413 1805 1.6E-135 T 13-10-2018 RAM_18740 e283319a57012c495f87a9f68865cd69 2684 SUPERFAMILY SSF52777 971 1158 3.89E-47 T 13-10-2018 RAM_18740 e283319a57012c495f87a9f68865cd69 2684 SUPERFAMILY SSF53474 1948 2242 2.06E-31 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_18740 e283319a57012c495f87a9f68865cd69 2684 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 389 497 3.2E-17 T 13-10-2018 IPR032821 Ketoacyl-synthetase, C-terminal extension Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_18740 e283319a57012c495f87a9f68865cd69 2684 Gene3D G3DSA:3.30.559.30 1143 1387 6.5E-140 T 13-10-2018 RAM_18740 e283319a57012c495f87a9f68865cd69 2684 SMART SM00825 Beta-ketoacyl synthase 12 439 2.0E-174 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RAM_12580 7c83799b190a2a0cff99e37ea3342fc6 1004 ProSitePatterns PS00622 LuxR-type HTH domain signature. 953 980 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_12580 7c83799b190a2a0cff99e37ea3342fc6 1004 Pfam PF00196 Bacterial regulatory proteins, luxR family 938 993 8.6E-18 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_12580 7c83799b190a2a0cff99e37ea3342fc6 1004 SUPERFAMILY SSF46894 926 999 1.94E-20 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_12580 7c83799b190a2a0cff99e37ea3342fc6 1004 SMART SM00421 936 993 1.3E-24 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_12580 7c83799b190a2a0cff99e37ea3342fc6 1004 Pfam PF13191 AAA ATPase domain 12 202 3.7E-26 T 13-10-2018 RAM_12580 7c83799b190a2a0cff99e37ea3342fc6 1004 SUPERFAMILY SSF52540 13 277 9.46E-11 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_12580 7c83799b190a2a0cff99e37ea3342fc6 1004 Gene3D G3DSA:1.25.40.10 458 737 6.2E-17 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_12580 7c83799b190a2a0cff99e37ea3342fc6 1004 Gene3D G3DSA:1.10.10.10 882 1003 5.1E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_12580 7c83799b190a2a0cff99e37ea3342fc6 1004 SUPERFAMILY SSF48452 435 648 8.47E-12 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_12580 7c83799b190a2a0cff99e37ea3342fc6 1004 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 953 969 1.1E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_12580 7c83799b190a2a0cff99e37ea3342fc6 1004 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 969 981 1.1E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_12580 7c83799b190a2a0cff99e37ea3342fc6 1004 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 939 953 1.1E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_45940 91581c957559b05b081b75c2a9043d28 306 SUPERFAMILY SSF51197 39 306 1.56E-85 T 13-10-2018 RAM_45940 91581c957559b05b081b75c2a9043d28 306 Gene3D G3DSA:3.60.130.10 31 306 1.3E-84 T 13-10-2018 RAM_45940 91581c957559b05b081b75c2a9043d28 306 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 41 295 1.8E-59 T 13-10-2018 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 RAM_08860 db80c7bb5d3f55ba07f556b637dab2f7 318 SUPERFAMILY SSF56042 151 306 2.62E-29 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily RAM_08860 db80c7bb5d3f55ba07f556b637dab2f7 318 PIRSF PIRSF005303 7 317 1.6E-87 T 13-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 RAM_08860 db80c7bb5d3f55ba07f556b637dab2f7 318 Gene3D G3DSA:3.30.1330.10 7 147 7.1E-45 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily RAM_08860 db80c7bb5d3f55ba07f556b637dab2f7 318 TIGRFAM TIGR01379 thiL: thiamine-phosphate kinase 12 316 7.5E-82 T 13-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 RAM_08860 db80c7bb5d3f55ba07f556b637dab2f7 318 Hamap MF_02128 Thiamine-monophosphate kinase [thiL]. 11 317 26.932 T 13-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 RAM_08860 db80c7bb5d3f55ba07f556b637dab2f7 318 SUPERFAMILY SSF55326 10 145 1.96E-33 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily RAM_08860 db80c7bb5d3f55ba07f556b637dab2f7 318 Gene3D G3DSA:3.90.650.10 154 317 1.0E-46 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily RAM_08860 db80c7bb5d3f55ba07f556b637dab2f7 318 Pfam PF00586 AIR synthase related protein, N-terminal domain 36 145 6.6E-21 T 13-10-2018 IPR016188 PurM-like, N-terminal domain RAM_37885 9df89450435d245ee21e1d3c15d42434 198 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 8 13 - T 13-10-2018 IPR018114 Serine proteases, trypsin family, histidine active site GO:0004252|GO:0006508 RAM_37885 9df89450435d245ee21e1d3c15d42434 198 Gene3D G3DSA:2.40.10.10 1 187 1.6E-14 T 13-10-2018 RAM_37885 9df89450435d245ee21e1d3c15d42434 198 Pfam PF00089 Trypsin 1 168 1.0E-10 T 13-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 RAM_37885 9df89450435d245ee21e1d3c15d42434 198 SUPERFAMILY SSF50494 1 188 8.49E-23 T 13-10-2018 IPR009003 Peptidase S1, PA clan RAM_37885 9df89450435d245ee21e1d3c15d42434 198 SMART SM00020 1 183 0.0079 T 13-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 RAM_46860 a7b0542da3f58e94e740f7fe409763c9 269 SUPERFAMILY SSF52540 3 234 7.33E-53 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_46860 a7b0542da3f58e94e740f7fe409763c9 269 Gene3D G3DSA:3.40.50.300 1 243 5.7E-52 T 13-10-2018 RAM_46860 a7b0542da3f58e94e740f7fe409763c9 269 SMART SM00382 30 233 2.1E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_46860 a7b0542da3f58e94e740f7fe409763c9 269 Pfam PF00005 ABC transporter 22 177 9.2E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_47575 9f0fb44310e48798b431e6296a3de4d7 539 Gene3D G3DSA:2.60.40.10 427 539 1.2E-29 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_47575 9f0fb44310e48798b431e6296a3de4d7 539 Gene3D G3DSA:2.60.40.10 311 426 3.3E-33 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_47575 9f0fb44310e48798b431e6296a3de4d7 539 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 214 247 2.7E-7 T 13-10-2018 IPR001434 Domain of unknown function DUF11 RAM_47575 9f0fb44310e48798b431e6296a3de4d7 539 Pfam PF01345 Domain of unknown function DUF11 201 280 1.1E-7 T 13-10-2018 IPR001434 Domain of unknown function DUF11 RAM_47575 9f0fb44310e48798b431e6296a3de4d7 539 Pfam PF17210 SdrD B-like domain 429 538 5.4E-28 T 13-10-2018 IPR033764 SD-repeat containing protein, B domain RAM_47575 9f0fb44310e48798b431e6296a3de4d7 539 Pfam PF17210 SdrD B-like domain 313 423 8.2E-34 T 13-10-2018 IPR033764 SD-repeat containing protein, B domain RAM_47575 9f0fb44310e48798b431e6296a3de4d7 539 SUPERFAMILY SSF117074 413 494 1.96E-21 T 13-10-2018 RAM_47575 9f0fb44310e48798b431e6296a3de4d7 539 SUPERFAMILY SSF117074 309 387 1.22E-20 T 13-10-2018 RAM_31945 a27d01b576c3b20e0e6f27aa842135b2 330 SUPERFAMILY SSF53686 17 313 6.81E-68 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RAM_31945 a27d01b576c3b20e0e6f27aa842135b2 330 Gene3D G3DSA:3.40.50.1100 26 301 1.2E-82 T 13-10-2018 RAM_31945 a27d01b576c3b20e0e6f27aa842135b2 330 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 27 293 4.0E-45 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RAM_31945 a27d01b576c3b20e0e6f27aa842135b2 330 Gene3D G3DSA:3.40.50.1100 44 149 1.2E-82 T 13-10-2018 RAM_31945 a27d01b576c3b20e0e6f27aa842135b2 330 TIGRFAM TIGR03945 PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA 10 309 4.1E-119 T 13-10-2018 IPR023927 2,3-diaminopropionate biosynthesis protein SbnA RAM_27730 49ff2e2cd7d05f2a6ce2beace2439f50 338 SUPERFAMILY SSF46785 11 83 3.02E-11 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_27730 49ff2e2cd7d05f2a6ce2beace2439f50 338 Pfam PF00891 O-methyltransferase 102 321 1.4E-32 T 13-10-2018 IPR001077 O-methyltransferase, family 2 GO:0008171 RAM_27730 49ff2e2cd7d05f2a6ce2beace2439f50 338 Gene3D G3DSA:3.40.50.150 89 338 4.2E-60 T 13-10-2018 RAM_27730 49ff2e2cd7d05f2a6ce2beace2439f50 338 PIRSF PIRSF005739 5 335 6.0E-27 T 13-10-2018 IPR016461 O-methyltransferase COMT-type GO:0008168 RAM_27730 49ff2e2cd7d05f2a6ce2beace2439f50 338 Gene3D G3DSA:1.10.10.10 4 82 9.1E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_27730 49ff2e2cd7d05f2a6ce2beace2439f50 338 Pfam PF16864 Dimerisation domain 11 91 3.3E-8 T 13-10-2018 IPR031725 Acetylserotonin O-methyltransferase, dimerisation domain RAM_27730 49ff2e2cd7d05f2a6ce2beace2439f50 338 SUPERFAMILY SSF53335 91 334 3.08E-45 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_33935 e8394177f23805166362cf81e21c700b 271 SUPERFAMILY SSF64005 35 258 5.62E-82 T 13-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 RAM_33935 e8394177f23805166362cf81e21c700b 271 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 35 262 3.0E-74 T 13-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 RAM_33935 e8394177f23805166362cf81e21c700b 271 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 35 263 36.977 T 13-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 RAM_33935 e8394177f23805166362cf81e21c700b 271 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 208 225 - T 13-10-2018 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 Reactome: R-HSA-446199|Reactome: R-HSA-4755609 RAM_33935 e8394177f23805166362cf81e21c700b 271 Pfam PF01255 Putative undecaprenyl diphosphate synthase 42 262 3.4E-72 T 13-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 RAM_33935 e8394177f23805166362cf81e21c700b 271 Gene3D G3DSA:3.40.1180.10 4 257 1.1E-93 T 13-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 RAM_08800 f6b4b904d5b57407cfd1a67cb11d522c 327 Pfam PF00710 Asparaginase, N-terminal 6 187 2.0E-42 T 13-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 RAM_08800 f6b4b904d5b57407cfd1a67cb11d522c 327 PIRSF PIRSF500176 2 323 3.7E-66 T 13-10-2018 RAM_08800 f6b4b904d5b57407cfd1a67cb11d522c 327 Gene3D G3DSA:3.40.50.1170 2 195 1.2E-56 T 13-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 RAM_08800 f6b4b904d5b57407cfd1a67cb11d522c 327 SMART SM00870 5 317 7.5E-91 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 RAM_08800 f6b4b904d5b57407cfd1a67cb11d522c 327 SUPERFAMILY SSF53774 3 321 5.36E-74 T 13-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 RAM_08800 f6b4b904d5b57407cfd1a67cb11d522c 327 PIRSF PIRSF001220 1 326 1.0E-64 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 RAM_08800 f6b4b904d5b57407cfd1a67cb11d522c 327 PRINTS PR00139 Asparaginase/glutaminase family signature 6 17 4.5E-10 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 RAM_08800 f6b4b904d5b57407cfd1a67cb11d522c 327 PRINTS PR00139 Asparaginase/glutaminase family signature 77 95 4.5E-10 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 RAM_08800 f6b4b904d5b57407cfd1a67cb11d522c 327 PRINTS PR00139 Asparaginase/glutaminase family signature 251 269 4.5E-10 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 RAM_08800 f6b4b904d5b57407cfd1a67cb11d522c 327 Gene3D G3DSA:3.40.50.40 205 321 3.0E-19 T 13-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 RAM_06720 073e95325b2528ddcb66ac484d34e46f 739 SUPERFAMILY SSF48576 3 339 2.1E-67 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily RAM_06720 073e95325b2528ddcb66ac484d34e46f 739 Gene3D G3DSA:1.10.600.10 380 707 1.8E-85 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily RAM_06720 073e95325b2528ddcb66ac484d34e46f 739 Gene3D G3DSA:1.10.600.10 2 335 3.9E-94 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily RAM_06720 073e95325b2528ddcb66ac484d34e46f 739 SUPERFAMILY SSF48576 389 695 7.77E-58 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily RAM_10280 ea0cf28062fefc20366fae9b57bd943d 237 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 5 233 4.5E-58 T 13-10-2018 RAM_10280 ea0cf28062fefc20366fae9b57bd943d 237 SUPERFAMILY SSF51735 1 236 9.54E-75 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_10280 ea0cf28062fefc20366fae9b57bd943d 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 22 39 9.5E-36 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_10280 ea0cf28062fefc20366fae9b57bd943d 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 119 135 9.5E-36 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_10280 ea0cf28062fefc20366fae9b57bd943d 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 166 183 9.5E-36 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_10280 ea0cf28062fefc20366fae9b57bd943d 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 145 164 9.5E-36 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_10280 ea0cf28062fefc20366fae9b57bd943d 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 72 83 9.5E-36 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_10280 ea0cf28062fefc20366fae9b57bd943d 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 198 218 9.5E-36 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_10280 ea0cf28062fefc20366fae9b57bd943d 237 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 1 176 0.0076 T 13-10-2018 RAM_10280 ea0cf28062fefc20366fae9b57bd943d 237 Gene3D G3DSA:3.40.50.720 1 236 1.6E-79 T 13-10-2018 RAM_10280 ea0cf28062fefc20366fae9b57bd943d 237 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 125 133 5.3E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_10280 ea0cf28062fefc20366fae9b57bd943d 237 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 145 164 5.3E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_10280 ea0cf28062fefc20366fae9b57bd943d 237 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 72 83 5.3E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_23060 51349e057a527d7406b5e413fcac5ab9 300 Gene3D G3DSA:3.40.190.290 91 291 5.4E-47 T 13-10-2018 RAM_23060 51349e057a527d7406b5e413fcac5ab9 300 Pfam PF03466 LysR substrate binding domain 89 287 1.2E-43 T 13-10-2018 IPR005119 LysR, substrate-binding RAM_23060 51349e057a527d7406b5e413fcac5ab9 300 SUPERFAMILY SSF53850 90 291 5.57E-39 T 13-10-2018 RAM_23060 51349e057a527d7406b5e413fcac5ab9 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 61 4.3E-15 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_23060 51349e057a527d7406b5e413fcac5ab9 300 Gene3D G3DSA:1.10.10.10 1 87 9.4E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_23060 51349e057a527d7406b5e413fcac5ab9 300 SUPERFAMILY SSF46785 1 110 8.18E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_23060 51349e057a527d7406b5e413fcac5ab9 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.2E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_23060 51349e057a527d7406b5e413fcac5ab9 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.2E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_23060 51349e057a527d7406b5e413fcac5ab9 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.2E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_35630 4ce78a9cae86edad3e8693186e78813c 247 SUPERFAMILY SSF56317 2 243 3.27E-64 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily RAM_35630 4ce78a9cae86edad3e8693186e78813c 247 Gene3D G3DSA:3.60.110.10 11 245 4.5E-75 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily RAM_35630 4ce78a9cae86edad3e8693186e78813c 247 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 124 144 - T 13-10-2018 IPR001110 Uncharacterised protein family UPF0012, conserved site RAM_35630 4ce78a9cae86edad3e8693186e78813c 247 Pfam PF00795 Carbon-nitrogen hydrolase 15 226 2.2E-44 T 13-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 RAM_10635 e5373c755ca099cdcd5c8af3833fd65a 462 Gene3D G3DSA:3.40.50.1220 279 462 8.1E-84 T 13-10-2018 RAM_10635 e5373c755ca099cdcd5c8af3833fd65a 462 PIRSF PIRSF000204 1 461 5.2E-190 T 13-10-2018 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 RAM_10635 e5373c755ca099cdcd5c8af3833fd65a 462 SUPERFAMILY SSF52467 288 460 9.81E-73 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily RAM_10635 e5373c755ca099cdcd5c8af3833fd65a 462 Pfam PF02233 NAD(P) transhydrogenase beta subunit 7 457 1.7E-179 T 13-10-2018 IPR034300 NADP transhydrogenase beta-like domain KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 RAM_30245 7036b4e7adfc9f2a3d5384fc1439acf4 192 Pfam PF04978 Protein of unknown function (DUF664) 10 158 4.6E-41 T 13-10-2018 IPR007061 Protein of unknown function DUF664 RAM_30245 7036b4e7adfc9f2a3d5384fc1439acf4 192 Gene3D G3DSA:1.20.120.450 4 159 1.7E-29 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_30245 7036b4e7adfc9f2a3d5384fc1439acf4 192 SUPERFAMILY SSF109854 9 157 1.3E-33 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_37190 da9e9b90033375390ffd60f17fb2750b 303 Pfam PF03466 LysR substrate binding domain 89 294 1.7E-38 T 13-10-2018 IPR005119 LysR, substrate-binding RAM_37190 da9e9b90033375390ffd60f17fb2750b 303 Gene3D G3DSA:3.40.190.10 163 268 1.1E-43 T 13-10-2018 RAM_37190 da9e9b90033375390ffd60f17fb2750b 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 66 5.4E-16 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_37190 da9e9b90033375390ffd60f17fb2750b 303 SUPERFAMILY SSF46785 4 113 7.0E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_37190 da9e9b90033375390ffd60f17fb2750b 303 Gene3D G3DSA:3.40.190.10 93 289 1.1E-43 T 13-10-2018 RAM_37190 da9e9b90033375390ffd60f17fb2750b 303 Gene3D G3DSA:1.10.10.10 2 86 2.8E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_37190 da9e9b90033375390ffd60f17fb2750b 303 SUPERFAMILY SSF53850 90 295 5.07E-36 T 13-10-2018 RAM_01325 cd36b9ca77a14d270dba1782996747f2 969 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 919 935 2.4E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_01325 cd36b9ca77a14d270dba1782996747f2 969 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 905 919 2.4E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_01325 cd36b9ca77a14d270dba1782996747f2 969 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 935 947 2.4E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_01325 cd36b9ca77a14d270dba1782996747f2 969 SUPERFAMILY SSF48452 686 885 2.78E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_01325 cd36b9ca77a14d270dba1782996747f2 969 SUPERFAMILY SSF52540 18 267 2.24E-12 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_01325 cd36b9ca77a14d270dba1782996747f2 969 Pfam PF00196 Bacterial regulatory proteins, luxR family 904 957 2.5E-19 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_01325 cd36b9ca77a14d270dba1782996747f2 969 SUPERFAMILY SSF46894 897 958 5.78E-19 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_01325 cd36b9ca77a14d270dba1782996747f2 969 Pfam PF13191 AAA ATPase domain 19 179 9.7E-21 T 13-10-2018 RAM_01325 cd36b9ca77a14d270dba1782996747f2 969 Gene3D G3DSA:3.40.50.300 9 193 1.9E-5 T 13-10-2018 RAM_01325 cd36b9ca77a14d270dba1782996747f2 969 Gene3D G3DSA:1.10.10.10 902 962 5.2E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_01325 cd36b9ca77a14d270dba1782996747f2 969 Gene3D G3DSA:1.25.40.10 594 892 1.5E-13 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_01325 cd36b9ca77a14d270dba1782996747f2 969 SMART SM00421 902 959 6.9E-25 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_31960 80f5d22367374054b928f981335693db 555 SUPERFAMILY SSF52777 196 436 8.12E-57 T 13-10-2018 RAM_31960 80f5d22367374054b928f981335693db 555 SMART SM00823 Phosphopantetheine attachment site 473 542 0.0072 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_31960 80f5d22367374054b928f981335693db 555 Pfam PF00550 Phosphopantetheine attachment site 476 534 2.9E-10 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_31960 80f5d22367374054b928f981335693db 555 Pfam PF00668 Condensation domain 15 439 2.7E-85 T 13-10-2018 IPR001242 Condensation domain RAM_31960 80f5d22367374054b928f981335693db 555 SUPERFAMILY SSF47336 465 538 3.01E-15 T 13-10-2018 IPR036736 ACP-like superfamily RAM_31960 80f5d22367374054b928f981335693db 555 SUPERFAMILY SSF52777 18 187 2.33E-50 T 13-10-2018 RAM_31960 80f5d22367374054b928f981335693db 555 Gene3D G3DSA:3.30.559.30 191 438 1.8E-135 T 13-10-2018 RAM_31960 80f5d22367374054b928f981335693db 555 Gene3D G3DSA:1.10.1200.10 458 545 1.5E-21 T 13-10-2018 IPR036736 ACP-like superfamily RAM_31960 80f5d22367374054b928f981335693db 555 Gene3D G3DSA:3.30.559.10 16 381 1.8E-135 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_47500 2178e6506378572de70ee39abf79dd94 195 SUPERFAMILY SSF48498 77 189 8.9E-8 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_47500 2178e6506378572de70ee39abf79dd94 195 Gene3D G3DSA:1.10.357.10 1 194 1.1E-49 T 13-10-2018 RAM_47500 2178e6506378572de70ee39abf79dd94 195 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 57 5.4E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_47500 2178e6506378572de70ee39abf79dd94 195 SUPERFAMILY SSF46689 3 81 3.49E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_23155 f8a321005573e9f89efa7f5a9db556d2 466 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 237 425 4.2E-29 T 13-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 RAM_23155 f8a321005573e9f89efa7f5a9db556d2 466 Gene3D G3DSA:3.30.420.40 220 466 2.1E-93 T 13-10-2018 RAM_23155 f8a321005573e9f89efa7f5a9db556d2 466 SUPERFAMILY SSF53067 235 454 7.56E-36 T 13-10-2018 RAM_23155 f8a321005573e9f89efa7f5a9db556d2 466 SUPERFAMILY SSF53067 1 228 5.89E-41 T 13-10-2018 RAM_23155 f8a321005573e9f89efa7f5a9db556d2 466 Gene3D G3DSA:3.30.420.40 1 219 9.1E-76 T 13-10-2018 RAM_23155 f8a321005573e9f89efa7f5a9db556d2 466 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 63 226 3.0E-22 T 13-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 RAM_11815 5670e4dc9e80ca1e5e4976d0b8f2accd 259 Gene3D G3DSA:3.20.20.30 1 241 4.7E-49 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_11815 5670e4dc9e80ca1e5e4976d0b8f2accd 259 Pfam PF00296 Luciferase-like monooxygenase 11 213 1.4E-35 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_11815 5670e4dc9e80ca1e5e4976d0b8f2accd 259 SUPERFAMILY SSF51679 4 237 2.21E-48 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_11815 5670e4dc9e80ca1e5e4976d0b8f2accd 259 TIGRFAM TIGR03856 F420_MSMEG_2906: probable F420-dependent oxidoreductase, MSMEG_2906 family 6 255 2.9E-124 T 13-10-2018 IPR022480 F420-dependent oxidoreductase, MSMEG2906 RAM_28110 0f2392ac025ec504119179432ae7a2e9 81 SUPERFAMILY SSF51735 3 80 2.93E-17 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_28110 0f2392ac025ec504119179432ae7a2e9 81 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 55 75 1.7E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_28110 0f2392ac025ec504119179432ae7a2e9 81 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 18 35 1.7E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_28110 0f2392ac025ec504119179432ae7a2e9 81 Gene3D G3DSA:3.40.50.720 2 81 1.2E-17 T 13-10-2018 RAM_28110 0f2392ac025ec504119179432ae7a2e9 81 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 3 80 5.2E-14 T 13-10-2018 RAM_29275 a1a7ecd9fbb976e3f90ba166d7076f3b 213 Pfam PF13628 Domain of unknown function (DUF4142) 67 198 2.6E-17 T 13-10-2018 IPR025419 Domain of unknown function DUF4142 RAM_08180 4b74228cb994866fc651bb8392afa8d4 181 Gene3D G3DSA:2.60.120.10 31 167 5.4E-18 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_08180 4b74228cb994866fc651bb8392afa8d4 181 Pfam PF05995 Cysteine dioxygenase type I 55 162 1.4E-17 T 13-10-2018 IPR010300 Cysteine dioxygenase type I GO:0005506|GO:0016702|GO:0055114 KEGG: 00270+1.13.11.20|KEGG: 00430+1.13.11.20|MetaCyc: PWY-5331|Reactome: R-HSA-1614558 RAM_08180 4b74228cb994866fc651bb8392afa8d4 181 SUPERFAMILY SSF51182 30 162 3.34E-28 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RAM_33165 8dcaef5f9c4afcfb0393fe94c7e12ceb 388 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 340 359 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RAM_33165 8dcaef5f9c4afcfb0393fe94c7e12ceb 388 Gene3D G3DSA:2.40.110.10 128 234 5.4E-33 T 13-10-2018 RAM_33165 8dcaef5f9c4afcfb0393fe94c7e12ceb 388 Gene3D G3DSA:1.20.140.10 236 388 5.8E-39 T 13-10-2018 RAM_33165 8dcaef5f9c4afcfb0393fe94c7e12ceb 388 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 129 222 1.8E-21 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RAM_33165 8dcaef5f9c4afcfb0393fe94c7e12ceb 388 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 241 381 8.8E-30 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_33165 8dcaef5f9c4afcfb0393fe94c7e12ceb 388 Gene3D G3DSA:1.10.540.10 1 127 8.8E-27 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_33165 8dcaef5f9c4afcfb0393fe94c7e12ceb 388 SUPERFAMILY SSF56645 3 233 3.93E-60 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_33165 8dcaef5f9c4afcfb0393fe94c7e12ceb 388 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 15 123 3.7E-17 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_33165 8dcaef5f9c4afcfb0393fe94c7e12ceb 388 SUPERFAMILY SSF47203 238 386 1.61E-39 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_16565 609a3da85792c3385654b5e564b46fb9 185 SUPERFAMILY SSF48498 78 162 7.91E-9 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_16565 609a3da85792c3385654b5e564b46fb9 185 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 57 9.6E-15 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_16565 609a3da85792c3385654b5e564b46fb9 185 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 3.0E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_16565 609a3da85792c3385654b5e564b46fb9 185 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 3.0E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_16565 609a3da85792c3385654b5e564b46fb9 185 Gene3D G3DSA:1.10.357.10 1 185 6.9E-56 T 13-10-2018 RAM_16565 609a3da85792c3385654b5e564b46fb9 185 SUPERFAMILY SSF46689 9 78 1.13E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_44915 6bbbe8d4cabaffff1287ee1f88da5959 319 Pfam PF01171 PP-loop family 26 194 5.6E-30 T 13-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 RAM_44915 6bbbe8d4cabaffff1287ee1f88da5959 319 Gene3D G3DSA:3.40.50.620 6 204 1.3E-51 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAM_44915 6bbbe8d4cabaffff1287ee1f88da5959 319 SUPERFAMILY SSF52402 20 227 5.95E-43 T 13-10-2018 RAM_44915 6bbbe8d4cabaffff1287ee1f88da5959 319 SUPERFAMILY SSF82829 208 307 4.97E-18 T 13-10-2018 RAM_44915 6bbbe8d4cabaffff1287ee1f88da5959 319 Pfam PF09179 TilS substrate binding domain 243 308 1.9E-13 T 13-10-2018 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 RAM_44915 6bbbe8d4cabaffff1287ee1f88da5959 319 Gene3D G3DSA:1.20.59.20 208 310 4.3E-6 T 13-10-2018 RAM_44915 6bbbe8d4cabaffff1287ee1f88da5959 319 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 13 302 18.664 T 13-10-2018 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 RAM_44915 6bbbe8d4cabaffff1287ee1f88da5959 319 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 26 198 3.0E-33 T 13-10-2018 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 RAM_23445 a3e076f8d52bf21eac779b48c02ad6d9 1439 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 1 278 2.9E-58 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal RAM_23445 a3e076f8d52bf21eac779b48c02ad6d9 1439 SUPERFAMILY SSF56214 1226 1323 1.44E-8 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 RAM_23445 a3e076f8d52bf21eac779b48c02ad6d9 1439 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 286 402 1.1E-32 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal RAM_23445 a3e076f8d52bf21eac779b48c02ad6d9 1439 Gene3D G3DSA:3.90.470.20 1220 1325 5.8E-7 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 RAM_23445 a3e076f8d52bf21eac779b48c02ad6d9 1439 SMART SM00826 922 1084 0.0074 T 13-10-2018 IPR020807 Polyketide synthase, dehydratase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_23445 a3e076f8d52bf21eac779b48c02ad6d9 1439 SUPERFAMILY SSF55048 643 699 1.7E-5 T 13-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding RAM_23445 a3e076f8d52bf21eac779b48c02ad6d9 1439 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 407 480 7.9E-10 T 13-10-2018 IPR032821 Ketoacyl-synthetase, C-terminal extension Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_23445 a3e076f8d52bf21eac779b48c02ad6d9 1439 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 541 813 2.8E-13 T 13-10-2018 IPR020801 Polyketide synthase, acyl transferase domain RAM_23445 a3e076f8d52bf21eac779b48c02ad6d9 1439 Pfam PF00698 Acyl transferase domain 591 783 8.7E-17 T 13-10-2018 IPR014043 Acyl transferase RAM_23445 a3e076f8d52bf21eac779b48c02ad6d9 1439 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 191 207 - T 13-10-2018 IPR018201 Beta-ketoacyl synthase, active site RAM_23445 a3e076f8d52bf21eac779b48c02ad6d9 1439 Gene3D G3DSA:3.90.470.20 1326 1421 8.6E-14 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 RAM_23445 a3e076f8d52bf21eac779b48c02ad6d9 1439 Gene3D G3DSA:3.10.129.110 944 1190 2.0E-18 T 13-10-2018 RAM_23445 a3e076f8d52bf21eac779b48c02ad6d9 1439 SUPERFAMILY SSF56214 1326 1406 3.49E-15 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 RAM_23445 a3e076f8d52bf21eac779b48c02ad6d9 1439 SMART SM00825 Beta-ketoacyl synthase 1 451 5.7E-90 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RAM_23445 a3e076f8d52bf21eac779b48c02ad6d9 1439 Pfam PF14765 Polyketide synthase dehydratase 932 1191 2.5E-20 T 13-10-2018 IPR020807 Polyketide synthase, dehydratase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_23445 a3e076f8d52bf21eac779b48c02ad6d9 1439 SUPERFAMILY SSF53901 1 447 3.43E-69 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_23445 a3e076f8d52bf21eac779b48c02ad6d9 1439 SUPERFAMILY SSF52151 537 806 6.54E-28 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RAM_23445 a3e076f8d52bf21eac779b48c02ad6d9 1439 Gene3D G3DSA:3.30.70.250 638 703 2.4E-39 T 13-10-2018 RAM_23445 a3e076f8d52bf21eac779b48c02ad6d9 1439 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 1326 1411 6.5E-12 T 13-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 RAM_23445 a3e076f8d52bf21eac779b48c02ad6d9 1439 SUPERFAMILY SSF54637 1075 1182 6.94E-5 T 13-10-2018 IPR029069 HotDog domain superfamily RAM_23445 a3e076f8d52bf21eac779b48c02ad6d9 1439 Gene3D G3DSA:3.40.366.10 575 786 2.4E-39 T 13-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 RAM_41355 ff07f2a85a69e2cdfe4519eaa5b55229 479 Pfam PF02805 Metal binding domain of Ada 15 78 2.4E-28 T 13-10-2018 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 RAM_41355 ff07f2a85a69e2cdfe4519eaa5b55229 479 Pfam PF06029 AlkA N-terminal domain 210 324 2.3E-36 T 13-10-2018 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal RAM_41355 ff07f2a85a69e2cdfe4519eaa5b55229 479 SUPERFAMILY SSF48150 315 461 1.75E-17 T 13-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 RAM_41355 ff07f2a85a69e2cdfe4519eaa5b55229 479 Gene3D G3DSA:3.40.10.10 7 79 2.6E-28 T 13-10-2018 IPR035451 Ada-like domain superfamily RAM_41355 ff07f2a85a69e2cdfe4519eaa5b55229 479 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 144 186 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RAM_41355 ff07f2a85a69e2cdfe4519eaa5b55229 479 SMART SM00342 107 190 2.3E-19 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_41355 ff07f2a85a69e2cdfe4519eaa5b55229 479 Gene3D G3DSA:3.30.310.20 209 324 3.5E-31 T 13-10-2018 IPR037046 DNA-3-methyladenine glycosylase AlkA, N-terminal domain superfamily RAM_41355 ff07f2a85a69e2cdfe4519eaa5b55229 479 Gene3D G3DSA:1.10.1670.40 417 459 7.7E-18 T 13-10-2018 RAM_41355 ff07f2a85a69e2cdfe4519eaa5b55229 479 Gene3D G3DSA:1.10.10.60 91 197 9.0E-17 T 13-10-2018 RAM_41355 ff07f2a85a69e2cdfe4519eaa5b55229 479 Gene3D G3DSA:1.10.340.30 366 416 7.7E-18 T 13-10-2018 RAM_41355 ff07f2a85a69e2cdfe4519eaa5b55229 479 SMART SM01009 209 324 3.4E-52 T 13-10-2018 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal RAM_41355 ff07f2a85a69e2cdfe4519eaa5b55229 479 SUPERFAMILY SSF57884 8 92 7.59E-31 T 13-10-2018 IPR035451 Ada-like domain superfamily RAM_41355 ff07f2a85a69e2cdfe4519eaa5b55229 479 SUPERFAMILY SSF55945 210 305 2.35E-27 T 13-10-2018 RAM_41355 ff07f2a85a69e2cdfe4519eaa5b55229 479 Pfam PF12833 Helix-turn-helix domain 113 190 1.5E-18 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_41355 ff07f2a85a69e2cdfe4519eaa5b55229 479 SUPERFAMILY SSF46689 144 191 3.32E-7 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_43965 61e05ecb03643de953369d1131143384 755 Gene3D G3DSA:3.40.50.300 490 747 1.4E-87 T 13-10-2018 RAM_43965 61e05ecb03643de953369d1131143384 755 SUPERFAMILY SSF50692 7 89 5.88E-10 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily RAM_43965 61e05ecb03643de953369d1131143384 755 Pfam PF02359 Cell division protein 48 (CDC48), N-terminal domain 8 90 9.5E-13 T 13-10-2018 IPR003338 CDC48, N-terminal subdomain RAM_43965 61e05ecb03643de953369d1131143384 755 Gene3D G3DSA:2.40.40.20 2 90 2.7E-8 T 13-10-2018 RAM_43965 61e05ecb03643de953369d1131143384 755 SMART SM01072 108 192 1.1E-5 T 13-10-2018 IPR004201 CDC48, domain 2 RAM_43965 61e05ecb03643de953369d1131143384 755 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 529 659 2.4E-39 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RAM_43965 61e05ecb03643de953369d1131143384 755 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 276 395 2.3E-13 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RAM_43965 61e05ecb03643de953369d1131143384 755 SMART SM01073 7 91 6.2E-18 T 13-10-2018 IPR003338 CDC48, N-terminal subdomain RAM_43965 61e05ecb03643de953369d1131143384 755 SUPERFAMILY SSF52540 490 749 1.14E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_43965 61e05ecb03643de953369d1131143384 755 SUPERFAMILY SSF52540 237 476 2.38E-32 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_43965 61e05ecb03643de953369d1131143384 755 SMART SM00382 272 400 1.4E-5 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_43965 61e05ecb03643de953369d1131143384 755 SMART SM00382 525 662 1.1E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_43965 61e05ecb03643de953369d1131143384 755 Gene3D G3DSA:1.10.8.60 661 733 1.4E-87 T 13-10-2018 RAM_43965 61e05ecb03643de953369d1131143384 755 Gene3D G3DSA:1.10.8.60 400 486 8.1E-16 T 13-10-2018 RAM_43965 61e05ecb03643de953369d1131143384 755 ProSitePatterns PS00674 AAA-protein family signature. 630 648 - T 13-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 RAM_43965 61e05ecb03643de953369d1131143384 755 Gene3D G3DSA:3.40.50.300 223 399 1.0E-23 T 13-10-2018 RAM_08670 b3d9c5367c5a5879a20050aeb57a69de 511 Pfam PF09206 Alpha-L-arabinofuranosidase B, catalytic 35 346 5.4E-133 T 13-10-2018 IPR015289 Alpha-L-arabinofuranosidase B, catalytic GO:0031221|GO:0046556 KEGG: 00520+3.2.1.55 RAM_08670 b3d9c5367c5a5879a20050aeb57a69de 511 Gene3D G3DSA:2.60.120.200 33 348 5.0E-135 T 13-10-2018 RAM_08670 b3d9c5367c5a5879a20050aeb57a69de 511 Gene3D G3DSA:2.80.10.50 351 511 7.9E-64 T 13-10-2018 RAM_08670 b3d9c5367c5a5879a20050aeb57a69de 511 SUPERFAMILY SSF110221 356 510 2.48E-52 T 13-10-2018 IPR036195 Alpha-L-arabinofuranosidase B, arabinose-binding domain superfamily GO:0046373|GO:0046556 RAM_08670 b3d9c5367c5a5879a20050aeb57a69de 511 Pfam PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain 364 505 2.8E-55 T 13-10-2018 IPR007934 Alpha-L-arabinofuranosidase B, arabinose-binding domain GO:0046373|GO:0046556 RAM_08670 b3d9c5367c5a5879a20050aeb57a69de 511 SUPERFAMILY SSF49899 35 346 1.22E-104 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily RAM_17715 91bc4a2de82b64420bb7cd27146b43d7 219 SMART SM01007 8 181 6.4E-51 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal RAM_17715 91bc4a2de82b64420bb7cd27146b43d7 219 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 9 180 4.4E-43 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal RAM_17715 91bc4a2de82b64420bb7cd27146b43d7 219 Gene3D G3DSA:3.40.225.10 2 211 4.1E-62 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily RAM_17715 91bc4a2de82b64420bb7cd27146b43d7 219 SUPERFAMILY SSF53639 3 202 2.16E-56 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily RAM_40400 c8cd416c5907652f0a5dbe4d3e0a861f 531 SUPERFAMILY SSF52467 150 321 5.64E-36 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily RAM_40400 c8cd416c5907652f0a5dbe4d3e0a861f 531 SUPERFAMILY SSF52518 1 174 2.55E-44 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_40400 c8cd416c5907652f0a5dbe4d3e0a861f 531 Gene3D G3DSA:3.40.50.970 1 170 3.3E-53 T 13-10-2018 RAM_40400 c8cd416c5907652f0a5dbe4d3e0a861f 531 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 1 165 1.6E-50 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RAM_40400 c8cd416c5907652f0a5dbe4d3e0a861f 531 SUPERFAMILY SSF52518 349 517 1.73E-40 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_40400 c8cd416c5907652f0a5dbe4d3e0a861f 531 Gene3D G3DSA:3.40.50.970 340 525 1.4E-43 T 13-10-2018 RAM_40400 c8cd416c5907652f0a5dbe4d3e0a861f 531 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 375 514 1.5E-26 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RAM_40400 c8cd416c5907652f0a5dbe4d3e0a861f 531 Gene3D G3DSA:3.40.50.1220 178 325 1.8E-40 T 13-10-2018 RAM_40400 c8cd416c5907652f0a5dbe4d3e0a861f 531 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 184 315 1.1E-29 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 RAM_06650 305d56d3153d022abdce71ee6041689c 334 Pfam PF13377 Periplasmic binding protein-like domain 168 331 5.6E-38 T 13-10-2018 RAM_06650 305d56d3153d022abdce71ee6041689c 334 SUPERFAMILY SSF53822 63 332 5.65E-64 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_06650 305d56d3153d022abdce71ee6041689c 334 SMART SM00354 2 72 3.6E-21 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_06650 305d56d3153d022abdce71ee6041689c 334 Gene3D G3DSA:3.40.50.2300 159 291 8.7E-74 T 13-10-2018 RAM_06650 305d56d3153d022abdce71ee6041689c 334 SUPERFAMILY SSF47413 3 60 1.86E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_06650 305d56d3153d022abdce71ee6041689c 334 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 4 14 6.1E-5 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_06650 305d56d3153d022abdce71ee6041689c 334 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 14 24 6.1E-5 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_06650 305d56d3153d022abdce71ee6041689c 334 Gene3D G3DSA:1.10.260.40 1 60 5.3E-21 T 13-10-2018 RAM_06650 305d56d3153d022abdce71ee6041689c 334 ProSitePatterns PS00356 LacI-type HTH domain signature. 5 23 - T 13-10-2018 RAM_06650 305d56d3153d022abdce71ee6041689c 334 Pfam PF00356 Bacterial regulatory proteins, lacI family 4 49 8.0E-15 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_06650 305d56d3153d022abdce71ee6041689c 334 Gene3D G3DSA:3.40.50.2300 61 314 8.7E-74 T 13-10-2018 RAM_06980 b1ca63cf25beb4f37736f1a6b67b013a 325 Gene3D G3DSA:3.40.190.10 29 143 8.7E-12 T 13-10-2018 RAM_06980 b1ca63cf25beb4f37736f1a6b67b013a 325 Gene3D G3DSA:3.40.190.10 146 323 1.1E-27 T 13-10-2018 RAM_06980 b1ca63cf25beb4f37736f1a6b67b013a 325 Pfam PF09084 NMT1/THI5 like 50 259 5.4E-30 T 13-10-2018 IPR015168 SsuA/THI5-like RAM_06980 b1ca63cf25beb4f37736f1a6b67b013a 325 SUPERFAMILY SSF53850 37 254 4.47E-36 T 13-10-2018 RAM_38205 30623919cfd2739d9d72f394cb7f094d 607 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 607 36.2 T 13-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 RAM_38205 30623919cfd2739d9d72f394cb7f094d 607 Gene3D G3DSA:3.60.20.10 2 240 6.8E-74 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RAM_38205 30623919cfd2739d9d72f394cb7f094d 607 Gene3D G3DSA:3.40.50.10490 446 592 3.3E-126 T 13-10-2018 RAM_38205 30623919cfd2739d9d72f394cb7f094d 607 Gene3D G3DSA:3.40.50.10490 246 606 3.3E-126 T 13-10-2018 RAM_38205 30623919cfd2739d9d72f394cb7f094d 607 SUPERFAMILY SSF56235 2 227 3.86E-67 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RAM_38205 30623919cfd2739d9d72f394cb7f094d 607 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 607 3.8E-213 T 13-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 RAM_38205 30623919cfd2739d9d72f394cb7f094d 607 Pfam PF13522 Glutamine amidotransferase domain 64 192 7.7E-27 T 13-10-2018 RAM_38205 30623919cfd2739d9d72f394cb7f094d 607 SUPERFAMILY SSF53697 244 607 6.96E-93 T 13-10-2018 RAM_38205 30623919cfd2739d9d72f394cb7f094d 607 Pfam PF01380 SIS domain 462 589 1.1E-19 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 RAM_38205 30623919cfd2739d9d72f394cb7f094d 607 Pfam PF01380 SIS domain 295 410 8.9E-23 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 RAM_13160 61a188fe7439c236b3fcd2e834e84f4e 479 Pfam PF13520 Amino acid permease 22 441 8.5E-52 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RAM_13160 61a188fe7439c236b3fcd2e834e84f4e 479 Gene3D G3DSA:1.20.1740.10 12 469 8.8E-111 T 13-10-2018 RAM_13160 61a188fe7439c236b3fcd2e834e84f4e 479 PIRSF PIRSF006060 2 473 1.5E-88 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RAM_11535 8f839370471d077704ec7055884e74c2 188 SUPERFAMILY SSF54909 12 113 4.29E-20 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_11535 8f839370471d077704ec7055884e74c2 188 Pfam PF07978 NIPSNAP 18 114 8.8E-18 T 13-10-2018 IPR012577 NIPSNAP RAM_11535 8f839370471d077704ec7055884e74c2 188 Gene3D G3DSA:3.30.70.100 11 115 2.0E-16 T 13-10-2018 RAM_03435 ae29109f2b576bfb7d58bbbf9de7a324 124 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 2 123 3.2E-67 T 13-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_03435 ae29109f2b576bfb7d58bbbf9de7a324 124 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_03435 ae29109f2b576bfb7d58bbbf9de7a324 124 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 123 39.496 T 13-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_03435 ae29109f2b576bfb7d58bbbf9de7a324 124 PIRSF PIRSF002133 1 124 2.3E-54 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_03435 ae29109f2b576bfb7d58bbbf9de7a324 124 Pfam PF00164 Ribosomal protein S12/S23 12 123 3.0E-43 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_03435 ae29109f2b576bfb7d58bbbf9de7a324 124 Gene3D G3DSA:2.40.50.140 1 124 5.6E-63 T 13-10-2018 RAM_03435 ae29109f2b576bfb7d58bbbf9de7a324 124 PRINTS PR01034 Ribosomal protein S12 signature 77 94 1.3E-58 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_03435 ae29109f2b576bfb7d58bbbf9de7a324 124 PRINTS PR01034 Ribosomal protein S12 signature 58 77 1.3E-58 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_03435 ae29109f2b576bfb7d58bbbf9de7a324 124 PRINTS PR01034 Ribosomal protein S12 signature 42 57 1.3E-58 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_03435 ae29109f2b576bfb7d58bbbf9de7a324 124 PRINTS PR01034 Ribosomal protein S12 signature 94 110 1.3E-58 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_03435 ae29109f2b576bfb7d58bbbf9de7a324 124 PRINTS PR01034 Ribosomal protein S12 signature 27 42 1.3E-58 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_03435 ae29109f2b576bfb7d58bbbf9de7a324 124 PRINTS PR01034 Ribosomal protein S12 signature 110 122 1.3E-58 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_03435 ae29109f2b576bfb7d58bbbf9de7a324 124 SUPERFAMILY SSF50249 2 123 3.86E-52 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_22385 8b2f241965f41ece55f2549a9e021dc7 323 Gene3D G3DSA:3.60.10.10 109 323 4.6E-23 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily RAM_22385 8b2f241965f41ece55f2549a9e021dc7 323 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 115 314 1.2E-7 T 13-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase RAM_22385 8b2f241965f41ece55f2549a9e021dc7 323 SUPERFAMILY SSF56219 108 321 6.54E-24 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily RAM_25030 f2014dfb03cdeb102af54acafe422d36 220 Gene3D G3DSA:1.10.150.240 17 89 2.5E-46 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 RAM_25030 f2014dfb03cdeb102af54acafe422d36 220 Gene3D G3DSA:3.40.50.1000 7 191 2.5E-46 T 13-10-2018 IPR023214 HAD superfamily RAM_25030 f2014dfb03cdeb102af54acafe422d36 220 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 84 188 8.3E-14 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_25030 f2014dfb03cdeb102af54acafe422d36 220 Pfam PF13419 Haloacid dehalogenase-like hydrolase 7 188 4.5E-24 T 13-10-2018 RAM_25030 f2014dfb03cdeb102af54acafe422d36 220 SUPERFAMILY SSF56784 5 192 8.27E-46 T 13-10-2018 IPR036412 HAD-like superfamily RAM_32315 6d2ad84767cc25073f718976d2ac2004 493 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 32 55 - T 13-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 RAM_32315 6d2ad84767cc25073f718976d2ac2004 493 Pfam PF00069 Protein kinase domain 29 273 5.9E-49 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_32315 6d2ad84767cc25073f718976d2ac2004 493 Gene3D G3DSA:3.30.200.20 16 106 1.2E-26 T 13-10-2018 RAM_32315 6d2ad84767cc25073f718976d2ac2004 493 SMART SM00220 26 277 3.0E-60 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_32315 6d2ad84767cc25073f718976d2ac2004 493 SUPERFAMILY SSF56112 9 282 5.8E-69 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_32315 6d2ad84767cc25073f718976d2ac2004 493 Gene3D G3DSA:1.10.510.10 110 283 3.0E-42 T 13-10-2018 RAM_32315 6d2ad84767cc25073f718976d2ac2004 493 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 146 158 - T 13-10-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 RAM_24480 3c124ba4f72f92a29f68b8e35e7f24e4 336 SMART SM00567 E-Z type HEAT repeats 287 316 61.0 T 13-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 RAM_24480 3c124ba4f72f92a29f68b8e35e7f24e4 336 SMART SM00567 E-Z type HEAT repeats 189 218 7.8 T 13-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 RAM_24480 3c124ba4f72f92a29f68b8e35e7f24e4 336 ProSitePatterns PS00552 MerR-type HTH domain signature. 4 26 - T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_24480 3c124ba4f72f92a29f68b8e35e7f24e4 336 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 9.6E-8 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_24480 3c124ba4f72f92a29f68b8e35e7f24e4 336 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 9.6E-8 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_24480 3c124ba4f72f92a29f68b8e35e7f24e4 336 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 9.6E-8 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_24480 3c124ba4f72f92a29f68b8e35e7f24e4 336 SUPERFAMILY SSF48371 99 328 1.09E-16 T 13-10-2018 IPR016024 Armadillo-type fold RAM_24480 3c124ba4f72f92a29f68b8e35e7f24e4 336 SUPERFAMILY SSF46955 3 103 1.61E-23 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily RAM_24480 3c124ba4f72f92a29f68b8e35e7f24e4 336 Pfam PF13411 MerR HTH family regulatory protein 3 68 1.6E-15 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_24480 3c124ba4f72f92a29f68b8e35e7f24e4 336 Pfam PF13646 HEAT repeats 184 256 8.2E-10 T 13-10-2018 RAM_24480 3c124ba4f72f92a29f68b8e35e7f24e4 336 Gene3D G3DSA:1.25.10.10 175 336 1.1E-13 T 13-10-2018 IPR011989 Armadillo-like helical RAM_24480 3c124ba4f72f92a29f68b8e35e7f24e4 336 Gene3D G3DSA:1.10.1660.10 1 108 1.3E-24 T 13-10-2018 RAM_24480 3c124ba4f72f92a29f68b8e35e7f24e4 336 SMART SM00422 1 70 4.8E-20 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_21275 1147815a96ded93d843495a38200623c 322 Gene3D G3DSA:1.10.10.10 124 184 5.8E-14 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_21275 1147815a96ded93d843495a38200623c 322 SUPERFAMILY SSF54427 189 303 6.25E-20 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_21275 1147815a96ded93d843495a38200623c 322 TIGRFAM TIGR02960 SigX5: RNA polymerase sigma-70 factor, TIGR02960 family 2 306 1.5E-102 T 13-10-2018 IPR014305 RNA polymerase sigma-G type, actinobacteria RAM_21275 1147815a96ded93d843495a38200623c 322 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 9 176 2.6E-19 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_21275 1147815a96ded93d843495a38200623c 322 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 29 61 - T 13-10-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_21275 1147815a96ded93d843495a38200623c 322 Pfam PF08281 Sigma-70, region 4 124 175 6.1E-14 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_21275 1147815a96ded93d843495a38200623c 322 Pfam PF04542 Sigma-70 region 2 9 75 2.9E-22 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_21275 1147815a96ded93d843495a38200623c 322 SUPERFAMILY SSF88946 4 78 2.55E-22 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_21275 1147815a96ded93d843495a38200623c 322 Gene3D G3DSA:3.10.450.50 187 314 2.3E-20 T 13-10-2018 RAM_21275 1147815a96ded93d843495a38200623c 322 Pfam PF12680 SnoaL-like domain 197 293 3.5E-12 T 13-10-2018 IPR037401 SnoaL-like domain RAM_21275 1147815a96ded93d843495a38200623c 322 Gene3D G3DSA:1.10.1740.10 1 77 2.1E-20 T 13-10-2018 RAM_21275 1147815a96ded93d843495a38200623c 322 SUPERFAMILY SSF88659 122 177 1.48E-11 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_48000 3e0007d5bf1c2f171542f01e2f79dd91 227 SUPERFAMILY SSF53335 21 195 1.21E-31 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_48000 3e0007d5bf1c2f171542f01e2f79dd91 227 Pfam PF02527 rRNA small subunit methyltransferase G 23 197 2.1E-48 T 13-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 RAM_48000 3e0007d5bf1c2f171542f01e2f79dd91 227 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 28 189 1.2E-38 T 13-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 RAM_48000 3e0007d5bf1c2f171542f01e2f79dd91 227 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 14 210 23.651 T 13-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 RAM_48000 3e0007d5bf1c2f171542f01e2f79dd91 227 Gene3D G3DSA:3.40.50.150 2 226 9.5E-56 T 13-10-2018 RAM_43200 efdad312030f813b6d058432c292ac6a 287 SUPERFAMILY SSF54427 168 275 2.12E-13 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_43200 efdad312030f813b6d058432c292ac6a 287 Gene3D G3DSA:3.10.450.50 166 276 1.5E-6 T 13-10-2018 RAM_43200 efdad312030f813b6d058432c292ac6a 287 Gene3D G3DSA:1.10.10.10 83 159 2.7E-9 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_43200 efdad312030f813b6d058432c292ac6a 287 Pfam PF04542 Sigma-70 region 2 10 73 2.9E-11 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_43200 efdad312030f813b6d058432c292ac6a 287 SUPERFAMILY SSF88659 101 157 2.62E-10 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_43200 efdad312030f813b6d058432c292ac6a 287 Pfam PF08281 Sigma-70, region 4 105 155 9.3E-10 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_43200 efdad312030f813b6d058432c292ac6a 287 SUPERFAMILY SSF88946 5 88 6.67E-14 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_43200 efdad312030f813b6d058432c292ac6a 287 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 5 158 8.0E-19 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_43200 efdad312030f813b6d058432c292ac6a 287 Gene3D G3DSA:1.10.1740.10 2 76 6.8E-9 T 13-10-2018 RAM_14840 cae80f0b80b775fe8d93638d82656645 321 Gene3D G3DSA:3.30.70.920 229 319 5.1E-11 T 13-10-2018 RAM_14840 cae80f0b80b775fe8d93638d82656645 321 Gene3D G3DSA:3.30.70.920 57 144 2.3E-6 T 13-10-2018 RAM_14840 cae80f0b80b775fe8d93638d82656645 321 Pfam PF01037 Lrp/AsnC ligand binding domain 245 313 3.6E-10 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RAM_14840 cae80f0b80b775fe8d93638d82656645 321 Gene3D G3DSA:1.10.10.10 4 54 4.6E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_14840 cae80f0b80b775fe8d93638d82656645 321 Gene3D G3DSA:1.10.10.10 178 224 2.8E-14 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_14840 cae80f0b80b775fe8d93638d82656645 321 SUPERFAMILY SSF54909 241 316 1.47E-9 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_14840 cae80f0b80b775fe8d93638d82656645 321 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 177 193 1.8E-8 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_14840 cae80f0b80b775fe8d93638d82656645 321 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 204 223 1.8E-8 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_14840 cae80f0b80b775fe8d93638d82656645 321 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 193 204 1.8E-8 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_14840 cae80f0b80b775fe8d93638d82656645 321 SUPERFAMILY SSF46785 176 223 4.29E-8 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_14840 cae80f0b80b775fe8d93638d82656645 321 Pfam PF13404 AsnC-type helix-turn-helix domain 177 218 1.4E-11 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_14840 cae80f0b80b775fe8d93638d82656645 321 Pfam PF13404 AsnC-type helix-turn-helix domain 6 46 2.0E-14 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_14840 cae80f0b80b775fe8d93638d82656645 321 SMART SM00344 5 109 3.3E-5 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RAM_14840 cae80f0b80b775fe8d93638d82656645 321 SMART SM00344 177 282 4.0E-6 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RAM_14840 cae80f0b80b775fe8d93638d82656645 321 SUPERFAMILY SSF46785 5 52 1.24E-7 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_14840 cae80f0b80b775fe8d93638d82656645 321 SUPERFAMILY SSF54909 66 139 2.68E-5 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_39230 1a006ef628bc507763051cf62772b54b 245 Pfam PF01872 RibD C-terminal domain 28 238 7.3E-26 T 13-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 RAM_39230 1a006ef628bc507763051cf62772b54b 245 Gene3D G3DSA:3.40.430.10 3 243 1.4E-53 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RAM_39230 1a006ef628bc507763051cf62772b54b 245 SUPERFAMILY SSF53597 28 241 2.52E-34 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RAM_01515 3b46d114d53f493106f7164f81707f66 298 Gene3D G3DSA:3.40.50.300 1 230 2.5E-59 T 13-10-2018 RAM_01515 3b46d114d53f493106f7164f81707f66 298 SUPERFAMILY SSF52540 4 219 2.87E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_01515 3b46d114d53f493106f7164f81707f66 298 SMART SM00382 29 207 1.5E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_01515 3b46d114d53f493106f7164f81707f66 298 Pfam PF00005 ABC transporter 20 159 1.4E-25 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_01515 3b46d114d53f493106f7164f81707f66 298 ProSitePatterns PS00211 ABC transporters family signature. 131 145 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_38090 8e5d2b2e5c7bce7b2e02eb8c44527818 730 Gene3D G3DSA:2.60.120.260 37 199 1.6E-49 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_38090 8e5d2b2e5c7bce7b2e02eb8c44527818 730 Gene3D G3DSA:3.20.20.80 312 600 9.1E-68 T 13-10-2018 RAM_38090 8e5d2b2e5c7bce7b2e02eb8c44527818 730 SUPERFAMILY SSF49785 32 200 1.18E-43 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_38090 8e5d2b2e5c7bce7b2e02eb8c44527818 730 Gene3D G3DSA:2.60.40.10 613 721 4.5E-25 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_38090 8e5d2b2e5c7bce7b2e02eb8c44527818 730 Pfam PF00703 Glycosyl hydrolases family 2 214 309 1.1E-11 T 13-10-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RAM_38090 8e5d2b2e5c7bce7b2e02eb8c44527818 730 PRINTS PR00132 Glycosyl hydrolase family 2 signature 130 145 5.4E-11 T 13-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RAM_38090 8e5d2b2e5c7bce7b2e02eb8c44527818 730 PRINTS PR00132 Glycosyl hydrolase family 2 signature 321 335 5.4E-11 T 13-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RAM_38090 8e5d2b2e5c7bce7b2e02eb8c44527818 730 PRINTS PR00132 Glycosyl hydrolase family 2 signature 443 458 5.4E-11 T 13-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RAM_38090 8e5d2b2e5c7bce7b2e02eb8c44527818 730 PRINTS PR00132 Glycosyl hydrolase family 2 signature 352 370 5.4E-11 T 13-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RAM_38090 8e5d2b2e5c7bce7b2e02eb8c44527818 730 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 319 487 9.1E-25 T 13-10-2018 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 RAM_38090 8e5d2b2e5c7bce7b2e02eb8c44527818 730 SUPERFAMILY SSF49303 209 309 4.6E-13 T 13-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily RAM_38090 8e5d2b2e5c7bce7b2e02eb8c44527818 730 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 42 197 9.6E-20 T 13-10-2018 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_38090 8e5d2b2e5c7bce7b2e02eb8c44527818 730 Gene3D G3DSA:2.60.40.10 200 309 1.6E-23 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_38090 8e5d2b2e5c7bce7b2e02eb8c44527818 730 SUPERFAMILY SSF51445 317 597 2.99E-51 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_38090 8e5d2b2e5c7bce7b2e02eb8c44527818 730 ProSitePatterns PS00608 Glycosyl hydrolases family 2 acid/base catalyst. 443 457 - T 13-10-2018 IPR023232 Glycoside hydrolase, family 2, active site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RAM_24740 cfeb73cc15c185c646a22188a21c2e28 230 Gene3D G3DSA:3.40.50.300 5 227 5.8E-54 T 13-10-2018 RAM_24740 cfeb73cc15c185c646a22188a21c2e28 230 SMART SM00382 35 230 4.8E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_24740 cfeb73cc15c185c646a22188a21c2e28 230 Pfam PF00005 ABC transporter 27 172 3.8E-24 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_24740 cfeb73cc15c185c646a22188a21c2e28 230 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_24740 cfeb73cc15c185c646a22188a21c2e28 230 SUPERFAMILY SSF52540 25 220 8.45E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_05520 9e556180f79ac07ffa0acb46d72d33a7 221 SUPERFAMILY SSF46689 11 90 8.48E-19 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_05520 9e556180f79ac07ffa0acb46d72d33a7 221 ProSitePatterns PS01081 TetR-type HTH domain signature. 37 67 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RAM_05520 9e556180f79ac07ffa0acb46d72d33a7 221 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 45 68 7.8E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_05520 9e556180f79ac07ffa0acb46d72d33a7 221 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 25 38 7.8E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_05520 9e556180f79ac07ffa0acb46d72d33a7 221 SUPERFAMILY SSF48498 89 195 1.46E-17 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_05520 9e556180f79ac07ffa0acb46d72d33a7 221 Pfam PF00440 Bacterial regulatory proteins, tetR family 25 70 1.4E-15 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_05520 9e556180f79ac07ffa0acb46d72d33a7 221 Gene3D G3DSA:1.10.357.10 9 201 6.9E-54 T 13-10-2018 RAM_15115 d276fa3fdfabb22b1961c496b75d2b7c 2209 Pfam PF05960 Bacterial protein of unknown function (DUF885) 572 1096 3.0E-152 T 13-10-2018 IPR010281 Protein of unknown function DUF885 RAM_15115 d276fa3fdfabb22b1961c496b75d2b7c 2209 Pfam PF05960 Bacterial protein of unknown function (DUF885) 1677 2195 1.7E-148 T 13-10-2018 IPR010281 Protein of unknown function DUF885 RAM_15115 d276fa3fdfabb22b1961c496b75d2b7c 2209 Pfam PF05960 Bacterial protein of unknown function (DUF885) 1127 1645 1.8E-148 T 13-10-2018 IPR010281 Protein of unknown function DUF885 RAM_15115 d276fa3fdfabb22b1961c496b75d2b7c 2209 Pfam PF05960 Bacterial protein of unknown function (DUF885) 24 543 5.8E-150 T 13-10-2018 IPR010281 Protein of unknown function DUF885 RAM_13080 3dbb419d379b82a0edb678bb29fa22b4 301 SUPERFAMILY SSF110581 4 300 8.37E-94 T 13-10-2018 IPR022830 Indigoidine synthase A-like GO:0016798 KEGG: 00240+4.2.1.70|MetaCyc: PWY-6019 RAM_13080 3dbb419d379b82a0edb678bb29fa22b4 301 Pfam PF04227 Indigoidine synthase A like protein 10 299 5.6E-112 T 13-10-2018 IPR007342 Pseudouridine-5'-phosphate glycosidase GO:0016798 KEGG: 00240+4.2.1.70|MetaCyc: PWY-6019 RAM_13080 3dbb419d379b82a0edb678bb29fa22b4 301 Gene3D G3DSA:3.40.1790.10 1 301 4.1E-111 T 13-10-2018 IPR022830 Indigoidine synthase A-like GO:0016798 KEGG: 00240+4.2.1.70|MetaCyc: PWY-6019 RAM_13080 3dbb419d379b82a0edb678bb29fa22b4 301 Hamap MF_01876 Pseudouridine-5'-phosphate glycosidase [psuG]. 9 301 37.416 T 13-10-2018 IPR007342 Pseudouridine-5'-phosphate glycosidase GO:0016798 KEGG: 00240+4.2.1.70|MetaCyc: PWY-6019 RAM_46515 c96bbf96fdc6d0f700d543c7ec9fc301 225 SUPERFAMILY SSF51735 2 220 5.94E-70 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_46515 c96bbf96fdc6d0f700d543c7ec9fc301 225 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 2 169 0.0033 T 13-10-2018 RAM_46515 c96bbf96fdc6d0f700d543c7ec9fc301 225 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 54 219 1.8E-48 T 13-10-2018 RAM_46515 c96bbf96fdc6d0f700d543c7ec9fc301 225 Gene3D G3DSA:3.40.50.720 1 224 8.9E-70 T 13-10-2018 RAM_46515 c96bbf96fdc6d0f700d543c7ec9fc301 225 Pfam PF00106 short chain dehydrogenase 3 35 3.7E-6 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_46515 c96bbf96fdc6d0f700d543c7ec9fc301 225 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 148 4.5E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_46515 c96bbf96fdc6d0f700d543c7ec9fc301 225 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 4.5E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_46515 c96bbf96fdc6d0f700d543c7ec9fc301 225 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 149 166 4.5E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_46515 c96bbf96fdc6d0f700d543c7ec9fc301 225 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 57 68 4.5E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_46515 c96bbf96fdc6d0f700d543c7ec9fc301 225 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 103 119 4.5E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_46515 c96bbf96fdc6d0f700d543c7ec9fc301 225 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 202 4.5E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_46515 c96bbf96fdc6d0f700d543c7ec9fc301 225 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 129 148 6.6E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_46515 c96bbf96fdc6d0f700d543c7ec9fc301 225 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 57 68 6.6E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_46515 c96bbf96fdc6d0f700d543c7ec9fc301 225 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 109 117 6.6E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_46515 c96bbf96fdc6d0f700d543c7ec9fc301 225 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 116 144 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_42690 9a90714277b9ec2bec260f8cd6e9a3e0 196 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 11 186 6.7E-35 T 13-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase RAM_42690 9a90714277b9ec2bec260f8cd6e9a3e0 196 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 11 187 6.7E-33 T 13-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase RAM_42690 9a90714277b9ec2bec260f8cd6e9a3e0 196 SUPERFAMILY SSF100950 10 190 3.56E-36 T 13-10-2018 IPR037171 NagB/RpiA transferase-like RAM_42690 9a90714277b9ec2bec260f8cd6e9a3e0 196 Gene3D G3DSA:3.40.50.10420 9 194 4.2E-37 T 13-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily RAM_42690 9a90714277b9ec2bec260f8cd6e9a3e0 196 PIRSF PIRSF006806 8 190 3.7E-36 T 13-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase RAM_17780 8218f90c26fda467e571ff55ee075267 251 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 185 0.0028 T 13-10-2018 RAM_17780 8218f90c26fda467e571ff55ee075267 251 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 137 165 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_17780 8218f90c26fda467e571ff55ee075267 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 169 7.6E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17780 8218f90c26fda467e571ff55ee075267 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 138 7.6E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17780 8218f90c26fda467e571ff55ee075267 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 7.6E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17780 8218f90c26fda467e571ff55ee075267 251 SUPERFAMILY SSF51735 5 248 7.5E-79 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_17780 8218f90c26fda467e571ff55ee075267 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 210 230 7.9E-42 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17780 8218f90c26fda467e571ff55ee075267 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 7.9E-42 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17780 8218f90c26fda467e571ff55ee075267 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 169 7.9E-42 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17780 8218f90c26fda467e571ff55ee075267 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 7.9E-42 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17780 8218f90c26fda467e571ff55ee075267 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 188 7.9E-42 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17780 8218f90c26fda467e571ff55ee075267 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 124 140 7.9E-42 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17780 8218f90c26fda467e571ff55ee075267 251 Gene3D G3DSA:3.40.50.720 1 250 3.7E-80 T 13-10-2018 RAM_17780 8218f90c26fda467e571ff55ee075267 251 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 247 4.4E-66 T 13-10-2018 RAM_41705 32749a5cfb4ac4af20132c877b1a2f1c 81 Gene3D G3DSA:1.10.287.1060 1 73 1.1E-9 T 13-10-2018 RAM_41705 32749a5cfb4ac4af20132c877b1a2f1c 81 SUPERFAMILY SSF140453 3 70 6.15E-11 T 13-10-2018 IPR036689 ESAT-6-like superfamily RAM_41705 32749a5cfb4ac4af20132c877b1a2f1c 81 Pfam PF06013 Proteins of 100 residues with WXG 3 68 3.9E-9 T 13-10-2018 IPR010310 Type VII secretion system ESAT-6-like RAM_25585 d58038f21889517516a81d05449b1251 191 Gene3D G3DSA:3.30.930.10 1 78 8.5E-18 T 13-10-2018 RAM_25585 d58038f21889517516a81d05449b1251 191 Gene3D G3DSA:3.30.70.380 85 187 9.4E-7 T 13-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 RAM_25585 d58038f21889517516a81d05449b1251 191 SMART SM00896 83 183 1.2E-6 T 13-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 RAM_25585 d58038f21889517516a81d05449b1251 191 Pfam PF03147 Ferredoxin-fold anticodon binding domain 83 182 6.5E-8 T 13-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 RAM_25585 d58038f21889517516a81d05449b1251 191 Pfam PF01409 tRNA synthetases class II core domain (F) 10 65 1.4E-14 T 13-10-2018 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 RAM_25585 d58038f21889517516a81d05449b1251 191 SUPERFAMILY SSF55681 12 63 1.09E-10 T 13-10-2018 RAM_25585 d58038f21889517516a81d05449b1251 191 SUPERFAMILY SSF54991 78 182 6.41E-10 T 13-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 RAM_00395 1348ad39cc3f4f76a149aa0db1b17f4d 356 Gene3D G3DSA:3.20.20.60 1 349 5.4E-116 T 13-10-2018 RAM_00395 1348ad39cc3f4f76a149aa0db1b17f4d 356 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 32 194 3.8E-29 T 13-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 RAM_00395 1348ad39cc3f4f76a149aa0db1b17f4d 356 PIRSF PIRSF015582 15 348 2.6E-82 T 13-10-2018 IPR011206 Citrate lyase beta subunit-like RAM_00395 1348ad39cc3f4f76a149aa0db1b17f4d 356 SUPERFAMILY SSF51621 25 288 7.33E-52 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 RAM_09850 b88ca1515aa6cf30c566fad0a3f2fdaa 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 6.6E-41 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RAM_09850 b88ca1515aa6cf30c566fad0a3f2fdaa 112 PRINTS PR00340 P-II protein signature 2 17 9.3E-38 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RAM_09850 b88ca1515aa6cf30c566fad0a3f2fdaa 112 PRINTS PR00340 P-II protein signature 23 41 9.3E-38 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RAM_09850 b88ca1515aa6cf30c566fad0a3f2fdaa 112 PRINTS PR00340 P-II protein signature 83 103 9.3E-38 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RAM_09850 b88ca1515aa6cf30c566fad0a3f2fdaa 112 PRINTS PR00340 P-II protein signature 52 75 9.3E-38 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RAM_09850 b88ca1515aa6cf30c566fad0a3f2fdaa 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 13-10-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 RAM_09850 b88ca1515aa6cf30c566fad0a3f2fdaa 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 13-10-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 RAM_09850 b88ca1515aa6cf30c566fad0a3f2fdaa 112 PIRSF PIRSF039144 1 112 1.9E-53 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RAM_09850 b88ca1515aa6cf30c566fad0a3f2fdaa 112 SMART SM00938 4 105 2.0E-60 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RAM_09850 b88ca1515aa6cf30c566fad0a3f2fdaa 112 Gene3D G3DSA:3.30.70.120 1 112 4.5E-45 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal RAM_09850 b88ca1515aa6cf30c566fad0a3f2fdaa 112 SUPERFAMILY SSF54913 1 112 2.56E-43 T 13-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta RAM_11720 98132463a6b8885ce2ad7324b3dc6429 374 Gene3D G3DSA:3.20.20.140 2 374 1.9E-88 T 13-10-2018 RAM_11720 98132463a6b8885ce2ad7324b3dc6429 374 SUPERFAMILY SSF51556 142 371 1.36E-8 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_11720 98132463a6b8885ce2ad7324b3dc6429 374 Pfam PF04909 Amidohydrolase 218 371 7.3E-9 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RAM_32485 c6714cba43ea7f8f1b7a03c235187f85 273 Pfam PF00756 Putative esterase 54 265 2.2E-9 T 13-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 RAM_32485 c6714cba43ea7f8f1b7a03c235187f85 273 Gene3D G3DSA:3.40.50.1820 29 269 1.3E-26 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_32485 c6714cba43ea7f8f1b7a03c235187f85 273 SUPERFAMILY SSF53474 37 272 4.99E-27 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_40365 fab67d10463ce1d83584caa5a93ed8ae 393 Gene3D G3DSA:3.40.50.10540 7 390 5.6E-151 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily RAM_40365 fab67d10463ce1d83584caa5a93ed8ae 393 Gene3D G3DSA:3.30.1540.10 235 325 5.6E-151 T 13-10-2018 RAM_40365 fab67d10463ce1d83584caa5a93ed8ae 393 SUPERFAMILY SSF89796 6 392 8.63E-149 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily RAM_40365 fab67d10463ce1d83584caa5a93ed8ae 393 Pfam PF02515 CoA-transferase family III 8 374 3.0E-136 T 13-10-2018 IPR003673 CoA-transferase family III GO:0003824 RAM_23805 8bd1f4b332f1527b31b3e38723f704a1 507 Gene3D G3DSA:3.50.50.60 246 400 4.4E-44 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_23805 8bd1f4b332f1527b31b3e38723f704a1 507 Gene3D G3DSA:3.50.50.60 2 189 9.3E-55 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_23805 8bd1f4b332f1527b31b3e38723f704a1 507 Gene3D G3DSA:3.40.30.120 401 505 7.2E-26 T 13-10-2018 RAM_23805 8bd1f4b332f1527b31b3e38723f704a1 507 Pfam PF01494 FAD binding domain 3 356 7.3E-70 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_23805 8bd1f4b332f1527b31b3e38723f704a1 507 SUPERFAMILY SSF51905 3 368 1.16E-57 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_23805 8bd1f4b332f1527b31b3e38723f704a1 507 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 145 160 2.0E-40 T 13-10-2018 RAM_23805 8bd1f4b332f1527b31b3e38723f704a1 507 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 324 342 2.0E-40 T 13-10-2018 RAM_23805 8bd1f4b332f1527b31b3e38723f704a1 507 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 291 306 2.0E-40 T 13-10-2018 RAM_23805 8bd1f4b332f1527b31b3e38723f704a1 507 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 3 25 2.0E-40 T 13-10-2018 RAM_23805 8bd1f4b332f1527b31b3e38723f704a1 507 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 342 358 2.0E-40 T 13-10-2018 RAM_23805 8bd1f4b332f1527b31b3e38723f704a1 507 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 306 322 2.0E-40 T 13-10-2018 RAM_00310 fa83e32c868db8fe80cb94dac0759e9f 346 PIRSF PIRSF001434 1 346 1.3E-93 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 RAM_00310 fa83e32c868db8fe80cb94dac0759e9f 346 Gene3D G3DSA:3.90.1150.10 240 346 2.4E-23 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_00310 fa83e32c868db8fe80cb94dac0759e9f 346 Gene3D G3DSA:3.40.640.10 7 238 3.2E-58 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_00310 fa83e32c868db8fe80cb94dac0759e9f 346 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 8 344 8.8E-74 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 RAM_00310 fa83e32c868db8fe80cb94dac0759e9f 346 SUPERFAMILY SSF53383 45 344 2.14E-67 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_35400 90ec2ebcb1a5ec34cb75a6542dcc5d34 262 Pfam PF00561 alpha/beta hydrolase fold 15 243 6.2E-26 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_35400 90ec2ebcb1a5ec34cb75a6542dcc5d34 262 SUPERFAMILY SSF53474 2 256 1.45E-62 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_35400 90ec2ebcb1a5ec34cb75a6542dcc5d34 262 Gene3D G3DSA:3.40.50.1820 1 258 4.5E-72 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_35400 90ec2ebcb1a5ec34cb75a6542dcc5d34 262 PRINTS PR00111 Alpha/beta hydrolase fold signature 40 55 7.6E-13 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_35400 90ec2ebcb1a5ec34cb75a6542dcc5d34 262 PRINTS PR00111 Alpha/beta hydrolase fold signature 201 215 7.6E-13 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_35400 90ec2ebcb1a5ec34cb75a6542dcc5d34 262 PRINTS PR00111 Alpha/beta hydrolase fold signature 98 111 7.6E-13 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_35400 90ec2ebcb1a5ec34cb75a6542dcc5d34 262 PRINTS PR00111 Alpha/beta hydrolase fold signature 84 97 7.6E-13 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_35400 90ec2ebcb1a5ec34cb75a6542dcc5d34 262 PRINTS PR00412 Epoxide hydrolase signature 20 38 1.4E-12 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_35400 90ec2ebcb1a5ec34cb75a6542dcc5d34 262 PRINTS PR00412 Epoxide hydrolase signature 232 254 1.4E-12 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_35400 90ec2ebcb1a5ec34cb75a6542dcc5d34 262 PRINTS PR00412 Epoxide hydrolase signature 199 215 1.4E-12 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_35400 90ec2ebcb1a5ec34cb75a6542dcc5d34 262 PRINTS PR00412 Epoxide hydrolase signature 40 55 1.4E-12 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_43350 eb285711a9192aa1e29cb8bc142d77a3 366 Gene3D G3DSA:3.40.50.1820 18 365 7.9E-101 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_43350 eb285711a9192aa1e29cb8bc142d77a3 366 Gene3D G3DSA:1.10.260.130 208 299 7.9E-101 T 13-10-2018 RAM_43350 eb285711a9192aa1e29cb8bc142d77a3 366 PIRSF PIRSF029171 8 366 4.7E-71 T 13-10-2018 IPR005152 Lipase, secreted GO:0004806|GO:0016042 RAM_43350 eb285711a9192aa1e29cb8bc142d77a3 366 SUPERFAMILY SSF53474 63 350 3.77E-21 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_43350 eb285711a9192aa1e29cb8bc142d77a3 366 Pfam PF03583 Secretory lipase 99 366 4.1E-55 T 13-10-2018 IPR005152 Lipase, secreted GO:0004806|GO:0016042 RAM_25395 5b720e841216cf8cea33a87d6d93a9a3 157 SUPERFAMILY SSF103256 1 136 5.49E-47 T 13-10-2018 IPR036104 Bifunctional nuclease superfamily GO:0004518 RAM_25395 5b720e841216cf8cea33a87d6d93a9a3 157 Pfam PF02577 Bifunctional nuclease 6 127 5.0E-44 T 13-10-2018 IPR003729 Bifunctional nuclease domain GO:0004518 RAM_25395 5b720e841216cf8cea33a87d6d93a9a3 157 Gene3D G3DSA:3.10.690.10 1 140 2.7E-46 T 13-10-2018 IPR036104 Bifunctional nuclease superfamily GO:0004518 RAM_16705 5aed5b3ba460602ccc97eabb00787e3e 1400 Pfam PF13193 AMP-binding enzyme C-terminal domain 444 516 3.5E-8 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_16705 5aed5b3ba460602ccc97eabb00787e3e 1400 ProSitePatterns PS00455 Putative AMP-binding domain signature. 187 198 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_16705 5aed5b3ba460602ccc97eabb00787e3e 1400 Gene3D G3DSA:3.30.300.30 429 527 8.7E-23 T 13-10-2018 RAM_16705 5aed5b3ba460602ccc97eabb00787e3e 1400 Pfam PF00501 AMP-binding enzyme 20 435 1.4E-85 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_16705 5aed5b3ba460602ccc97eabb00787e3e 1400 SUPERFAMILY SSF47336 542 624 1.96E-8 T 13-10-2018 IPR036736 ACP-like superfamily RAM_16705 5aed5b3ba460602ccc97eabb00787e3e 1400 SUPERFAMILY SSF51161 987 1099 3.88E-10 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily RAM_16705 5aed5b3ba460602ccc97eabb00787e3e 1400 Gene3D G3DSA:1.10.1200.10 538 620 7.3E-14 T 13-10-2018 IPR036736 ACP-like superfamily RAM_16705 5aed5b3ba460602ccc97eabb00787e3e 1400 Gene3D G3DSA:2.160.10.10 737 860 4.3E-8 T 13-10-2018 RAM_16705 5aed5b3ba460602ccc97eabb00787e3e 1400 Pfam PF00550 Phosphopantetheine attachment site 548 610 1.7E-6 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_16705 5aed5b3ba460602ccc97eabb00787e3e 1400 SUPERFAMILY SSF51161 713 853 7.21E-13 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily RAM_16705 5aed5b3ba460602ccc97eabb00787e3e 1400 SUPERFAMILY SSF56801 15 554 8.5E-132 T 13-10-2018 RAM_16705 5aed5b3ba460602ccc97eabb00787e3e 1400 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 47 458 6.7E-115 T 13-10-2018 IPR010071 Amino acid adenylation domain RAM_16705 5aed5b3ba460602ccc97eabb00787e3e 1400 SUPERFAMILY SSF51161 1218 1339 7.21E-11 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily RAM_16705 5aed5b3ba460602ccc97eabb00787e3e 1400 Gene3D G3DSA:3.40.50.12780 10 427 2.0E-110 T 13-10-2018 RAM_16705 5aed5b3ba460602ccc97eabb00787e3e 1400 Gene3D G3DSA:2.160.10.10 1234 1344 4.0E-6 T 13-10-2018 RAM_31020 d15c6764d8ab0c4410c10b8db2e2b6de 855 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 107 854 2.7E-158 T 13-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 RAM_31020 d15c6764d8ab0c4410c10b8db2e2b6de 855 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 848 39.507 T 13-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 RAM_31020 d15c6764d8ab0c4410c10b8db2e2b6de 855 Gene3D G3DSA:3.30.70.380 762 855 3.0E-24 T 13-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 RAM_31020 d15c6764d8ab0c4410c10b8db2e2b6de 855 SMART SM00874 435 508 2.2E-19 T 13-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 RAM_31020 d15c6764d8ab0c4410c10b8db2e2b6de 855 Gene3D G3DSA:3.30.930.10 523 750 1.5E-54 T 13-10-2018 RAM_31020 d15c6764d8ab0c4410c10b8db2e2b6de 855 Pfam PF03484 tRNA synthetase B5 domain 442 508 7.6E-12 T 13-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 RAM_31020 d15c6764d8ab0c4410c10b8db2e2b6de 855 Pfam PF03483 B3/4 domain 246 418 4.2E-63 T 13-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 RAM_31020 d15c6764d8ab0c4410c10b8db2e2b6de 855 SUPERFAMILY SSF54991 759 854 2.35E-24 T 13-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 RAM_31020 d15c6764d8ab0c4410c10b8db2e2b6de 855 Pfam PF03147 Ferredoxin-fold anticodon binding domain 761 854 9.6E-22 T 13-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 RAM_31020 d15c6764d8ab0c4410c10b8db2e2b6de 855 SUPERFAMILY SSF46955 437 512 2.11E-13 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily RAM_31020 d15c6764d8ab0c4410c10b8db2e2b6de 855 Gene3D G3DSA:3.50.40.10 232 426 1.5E-71 T 13-10-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 KEGG: 00970+6.1.1.20 RAM_31020 d15c6764d8ab0c4410c10b8db2e2b6de 855 SMART SM00896 761 854 2.9E-38 T 13-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 RAM_31020 d15c6764d8ab0c4410c10b8db2e2b6de 855 Gene3D G3DSA:3.30.56.10 438 512 6.6E-15 T 13-10-2018 RAM_31020 d15c6764d8ab0c4410c10b8db2e2b6de 855 SUPERFAMILY SSF55681 504 749 3.83E-44 T 13-10-2018 RAM_31020 d15c6764d8ab0c4410c10b8db2e2b6de 855 SUPERFAMILY SSF50249 44 228 1.14E-27 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_31020 d15c6764d8ab0c4410c10b8db2e2b6de 855 SMART SM00873 246 419 6.0E-83 T 13-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 RAM_31020 d15c6764d8ab0c4410c10b8db2e2b6de 855 SUPERFAMILY SSF56037 230 428 1.41E-65 T 13-10-2018 RAM_31020 d15c6764d8ab0c4410c10b8db2e2b6de 855 Pfam PF01588 Putative tRNA binding domain 107 179 3.2E-9 T 13-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 RAM_03270 ee6e8c5cd832f5f1ef385ab06ee38c65 214 SUPERFAMILY SSF51182 9 203 1.51E-62 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RAM_03270 ee6e8c5cd832f5f1ef385ab06ee38c65 214 Gene3D G3DSA:2.60.120.10 9 212 3.1E-62 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_03270 ee6e8c5cd832f5f1ef385ab06ee38c65 214 ProDom PD001462 35-EPIMERASE DTDP-4-DEHYDRORHAMNOSE ISOMERASE RMLC EPIMERASE RELATED DTDP-6-DEOXY-D-GLUCOSE-35-EPIMERASE DTDP-4-KETO-6-DEOXY-D-GLUCOSE DTDP-4-KETO-6-DEOXYGLUCOSE-35-EPIMERASE DTDP-L-RHAMNOSE 14 186 6.0E-98 T 13-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 RAM_03270 ee6e8c5cd832f5f1ef385ab06ee38c65 214 Pfam PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase 14 185 1.1E-50 T 13-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 RAM_32515 87cefb45072edaaaccbd9a2b05618f38 168 Pfam PF02576 RimP N-terminal domain 1 73 1.3E-18 T 13-10-2018 IPR028989 Ribosome maturation factor RimP, N-terminal RAM_32515 87cefb45072edaaaccbd9a2b05618f38 168 SUPERFAMILY SSF75420 3 73 3.27E-17 T 13-10-2018 IPR035956 RimP, N-terminal domain superfamily RAM_32515 87cefb45072edaaaccbd9a2b05618f38 168 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 3 137 17.149 T 13-10-2018 IPR003728 Ribosome maturation factor RimP GO:0042274 RAM_32515 87cefb45072edaaaccbd9a2b05618f38 168 Gene3D G3DSA:3.30.300.70 1 70 1.7E-15 T 13-10-2018 IPR035956 RimP, N-terminal domain superfamily RAM_32515 87cefb45072edaaaccbd9a2b05618f38 168 Pfam PF17384 RimP C-terminal SH3 domain 76 137 4.9E-5 T 13-10-2018 IPR028998 Ribosome maturation factor RimP, C-terminal RAM_22095 c72cfd0fbfdc2170b427fa61dfbdaf7f 158 SUPERFAMILY SSF46785 7 150 5.13E-27 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_22095 c72cfd0fbfdc2170b427fa61dfbdaf7f 158 PRINTS PR00598 Bacterial regulatory protein MarR family signature 75 90 1.2E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_22095 c72cfd0fbfdc2170b427fa61dfbdaf7f 158 PRINTS PR00598 Bacterial regulatory protein MarR family signature 94 110 1.2E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_22095 c72cfd0fbfdc2170b427fa61dfbdaf7f 158 PRINTS PR00598 Bacterial regulatory protein MarR family signature 125 145 1.2E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_22095 c72cfd0fbfdc2170b427fa61dfbdaf7f 158 Pfam PF12802 MarR family 38 98 1.4E-13 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_22095 c72cfd0fbfdc2170b427fa61dfbdaf7f 158 Gene3D G3DSA:1.10.10.10 6 154 3.4E-35 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_22095 c72cfd0fbfdc2170b427fa61dfbdaf7f 158 SMART SM00347 32 135 6.1E-13 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_21765 bdbd7e5a75ebd3771d23603371074910 557 Gene3D G3DSA:3.30.420.40 10 322 3.6E-91 T 13-10-2018 RAM_21765 bdbd7e5a75ebd3771d23603371074910 557 SUPERFAMILY SSF53067 1 326 2.59E-19 T 13-10-2018 RAM_21765 bdbd7e5a75ebd3771d23603371074910 557 Pfam PF16861 Carbamoyltransferase C-terminus 371 539 1.9E-65 T 13-10-2018 IPR031730 Carbamoyltransferase, C-terminal RAM_21765 bdbd7e5a75ebd3771d23603371074910 557 SUPERFAMILY SSF55821 363 544 9.77E-8 T 13-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily RAM_21765 bdbd7e5a75ebd3771d23603371074910 557 Pfam PF02543 Carbamoyltransferase N-terminus 2 73 2.3E-9 T 13-10-2018 IPR003696 Carbamoyltransferase GO:0003824|GO:0009058 RAM_21765 bdbd7e5a75ebd3771d23603371074910 557 Pfam PF02543 Carbamoyltransferase N-terminus 113 322 4.4E-47 T 13-10-2018 IPR003696 Carbamoyltransferase GO:0003824|GO:0009058 RAM_21765 bdbd7e5a75ebd3771d23603371074910 557 Gene3D G3DSA:3.90.870.20 336 538 6.9E-75 T 13-10-2018 IPR038152 Carbamoyltransferase, C-terminal domain superfamily RAM_21765 bdbd7e5a75ebd3771d23603371074910 557 Gene3D G3DSA:3.30.420.350 122 315 3.6E-91 T 13-10-2018 RAM_13015 ffa50604a01cb056049f769ecd93a0b1 268 SUPERFAMILY SSF50494 14 258 1.44E-58 T 13-10-2018 IPR009003 Peptidase S1, PA clan RAM_13015 ffa50604a01cb056049f769ecd93a0b1 268 Gene3D G3DSA:2.40.10.10 54 257 1.5E-72 T 13-10-2018 RAM_13015 ffa50604a01cb056049f769ecd93a0b1 268 ProSitePatterns PS00135 Serine proteases, trypsin family, serine active site. 211 222 - T 13-10-2018 IPR033116 Serine proteases, trypsin family, serine active site RAM_13015 ffa50604a01cb056049f769ecd93a0b1 268 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 74 79 - T 13-10-2018 IPR018114 Serine proteases, trypsin family, histidine active site GO:0004252|GO:0006508 RAM_13015 ffa50604a01cb056049f769ecd93a0b1 268 Gene3D G3DSA:2.40.10.10 48 255 1.5E-72 T 13-10-2018 RAM_13015 ffa50604a01cb056049f769ecd93a0b1 268 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 64 79 1.0E-12 T 13-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 RAM_13015 ffa50604a01cb056049f769ecd93a0b1 268 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 210 222 1.0E-12 T 13-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 RAM_13015 ffa50604a01cb056049f769ecd93a0b1 268 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 120 134 1.0E-12 T 13-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 RAM_13015 ffa50604a01cb056049f769ecd93a0b1 268 SMART SM00020 41 261 6.8E-64 T 13-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 RAM_13015 ffa50604a01cb056049f769ecd93a0b1 268 Pfam PF00089 Trypsin 42 261 7.9E-50 T 13-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 RAM_34320 7ec50048e930139e12c9fc86bc7549d4 236 TIGRFAM TIGR00426 TIGR00426: competence protein ComEA helix-hairpin-helix repeat region 172 235 1.9E-17 T 13-10-2018 IPR004509 Competence protein ComEA, helix-hairpin-helix domain RAM_34320 7ec50048e930139e12c9fc86bc7549d4 236 Pfam PF12836 Helix-hairpin-helix motif 173 234 1.0E-22 T 13-10-2018 RAM_34320 7ec50048e930139e12c9fc86bc7549d4 236 SUPERFAMILY SSF47781 162 236 9.45E-29 T 13-10-2018 IPR010994 RuvA domain 2-like RAM_34320 7ec50048e930139e12c9fc86bc7549d4 236 Pfam PF10531 SLBB domain 103 153 3.7E-10 T 13-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_34320 7ec50048e930139e12c9fc86bc7549d4 236 Gene3D G3DSA:1.10.150.320 160 234 7.2E-24 T 13-10-2018 RAM_34320 7ec50048e930139e12c9fc86bc7549d4 236 SMART SM00278 183 202 2.8 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RAM_34320 7ec50048e930139e12c9fc86bc7549d4 236 SMART SM00278 213 232 3.4 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RAM_34940 a94336e782a4493baa08004bffd5a514 533 Gene3D G3DSA:3.50.7.10 190 370 2.4E-212 T 13-10-2018 IPR027409 GroEL-like apical domain superfamily RAM_34940 a94336e782a4493baa08004bffd5a514 533 SUPERFAMILY SSF52029 185 374 7.85E-73 T 13-10-2018 IPR027409 GroEL-like apical domain superfamily RAM_34940 a94336e782a4493baa08004bffd5a514 533 Gene3D G3DSA:1.10.560.10 7 518 2.4E-212 T 13-10-2018 IPR027413 GroEL-like equatorial domain superfamily RAM_34940 a94336e782a4493baa08004bffd5a514 533 SUPERFAMILY SSF54849 136 203 1.85E-25 T 13-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily RAM_34940 a94336e782a4493baa08004bffd5a514 533 Gene3D G3DSA:3.30.260.10 135 408 2.4E-212 T 13-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily RAM_34940 a94336e782a4493baa08004bffd5a514 533 ProSitePatterns PS00296 Chaperonins cpn60 signature. 403 414 - T 13-10-2018 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RAM_34940 a94336e782a4493baa08004bffd5a514 533 SUPERFAMILY SSF48592 2 522 2.47E-73 T 13-10-2018 IPR027413 GroEL-like equatorial domain superfamily RAM_34940 a94336e782a4493baa08004bffd5a514 533 Hamap MF_00600 60 kDa chaperonin [groL]. 1 533 39.414 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RAM_34940 a94336e782a4493baa08004bffd5a514 533 Pfam PF00118 TCP-1/cpn60 chaperonin family 22 522 2.9E-85 T 13-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 RAM_34940 a94336e782a4493baa08004bffd5a514 533 PRINTS PR00298 60kDa chaperonin signature 26 52 2.4E-67 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RAM_34940 a94336e782a4493baa08004bffd5a514 533 PRINTS PR00298 60kDa chaperonin signature 82 109 2.4E-67 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RAM_34940 a94336e782a4493baa08004bffd5a514 533 PRINTS PR00298 60kDa chaperonin signature 348 373 2.4E-67 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RAM_34940 a94336e782a4493baa08004bffd5a514 533 PRINTS PR00298 60kDa chaperonin signature 396 417 2.4E-67 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RAM_34940 a94336e782a4493baa08004bffd5a514 533 PRINTS PR00298 60kDa chaperonin signature 266 289 2.4E-67 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RAM_34940 a94336e782a4493baa08004bffd5a514 533 TIGRFAM TIGR02348 GroEL: chaperonin GroL 2 523 7.8E-233 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RAM_02680 900d3bc19348aef9dd40d48a96319299 460 SUPERFAMILY SSF56762 70 460 2.35E-122 T 13-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_02680 900d3bc19348aef9dd40d48a96319299 460 Gene3D G3DSA:1.10.645.20 59 460 1.8E-166 T 13-10-2018 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_02680 900d3bc19348aef9dd40d48a96319299 460 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 59 460 1.1E-169 T 13-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_02680 900d3bc19348aef9dd40d48a96319299 460 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 53 460 47.198 T 13-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_02680 900d3bc19348aef9dd40d48a96319299 460 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 175 460 5.3E-111 T 13-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_02680 900d3bc19348aef9dd40d48a96319299 460 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 97 108 - T 13-10-2018 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_20380 eaad7bda6206da4d12da40264b753bc3 537 SUPERFAMILY SSF56801 7 532 3.66E-131 T 13-10-2018 RAM_20380 eaad7bda6206da4d12da40264b753bc3 537 Gene3D G3DSA:3.40.50.12780 2 435 1.2E-112 T 13-10-2018 RAM_20380 eaad7bda6206da4d12da40264b753bc3 537 Pfam PF13193 AMP-binding enzyme C-terminal domain 449 524 4.0E-21 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_20380 eaad7bda6206da4d12da40264b753bc3 537 ProSitePatterns PS00455 Putative AMP-binding domain signature. 183 194 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_20380 eaad7bda6206da4d12da40264b753bc3 537 Pfam PF00501 AMP-binding enzyme 21 440 3.3E-84 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_20380 eaad7bda6206da4d12da40264b753bc3 537 Gene3D G3DSA:3.30.300.310 436 536 2.5E-33 T 13-10-2018 RAM_06000 3816341422343d82d1a5a062d2b2f388 411 Gene3D G3DSA:3.30.390.30 323 406 1.1E-5 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RAM_06000 3816341422343d82d1a5a062d2b2f388 411 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 228 244 3.7E-17 T 13-10-2018 RAM_06000 3816341422343d82d1a5a062d2b2f388 411 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 97 115 3.7E-17 T 13-10-2018 RAM_06000 3816341422343d82d1a5a062d2b2f388 411 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 254 276 3.7E-17 T 13-10-2018 RAM_06000 3816341422343d82d1a5a062d2b2f388 411 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 3.7E-17 T 13-10-2018 RAM_06000 3816341422343d82d1a5a062d2b2f388 411 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 143 161 3.7E-17 T 13-10-2018 RAM_06000 3816341422343d82d1a5a062d2b2f388 411 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 297 3.2E-42 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAM_06000 3816341422343d82d1a5a062d2b2f388 411 Gene3D G3DSA:3.50.50.60 110 235 2.1E-84 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_06000 3816341422343d82d1a5a062d2b2f388 411 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 4 26 1.1E-12 T 13-10-2018 RAM_06000 3816341422343d82d1a5a062d2b2f388 411 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 269 276 1.1E-12 T 13-10-2018 RAM_06000 3816341422343d82d1a5a062d2b2f388 411 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 229 243 1.1E-12 T 13-10-2018 RAM_06000 3816341422343d82d1a5a062d2b2f388 411 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 143 168 1.1E-12 T 13-10-2018 RAM_06000 3816341422343d82d1a5a062d2b2f388 411 Gene3D G3DSA:3.50.50.60 5 308 2.1E-84 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_06000 3816341422343d82d1a5a062d2b2f388 411 SUPERFAMILY SSF55424 316 393 2.88E-10 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RAM_06000 3816341422343d82d1a5a062d2b2f388 411 Pfam PF14759 Reductase C-terminal 323 388 2.9E-6 T 13-10-2018 IPR028202 Reductase, C-terminal RAM_06000 3816341422343d82d1a5a062d2b2f388 411 SUPERFAMILY SSF51905 143 308 1.69E-22 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_06000 3816341422343d82d1a5a062d2b2f388 411 SUPERFAMILY SSF51905 3 189 2.97E-37 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_27225 fa8784bd7a98ac70dd6ee668bc083fa9 393 PIRSF PIRSF005962 1 390 9.4E-107 T 13-10-2018 IPR017439 Amidohydrolase GO:0016787 RAM_27225 fa8784bd7a98ac70dd6ee668bc083fa9 393 Gene3D G3DSA:3.30.70.360 185 299 6.6E-125 T 13-10-2018 RAM_27225 fa8784bd7a98ac70dd6ee668bc083fa9 393 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 14 374 4.7E-90 T 13-10-2018 IPR017439 Amidohydrolase GO:0016787 RAM_27225 fa8784bd7a98ac70dd6ee668bc083fa9 393 SUPERFAMILY SSF53187 3 386 1.62E-72 T 13-10-2018 RAM_27225 fa8784bd7a98ac70dd6ee668bc083fa9 393 Pfam PF07687 Peptidase dimerisation domain 189 269 2.2E-10 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain RAM_27225 fa8784bd7a98ac70dd6ee668bc083fa9 393 Gene3D G3DSA:3.40.630.10 14 373 6.6E-125 T 13-10-2018 RAM_27225 fa8784bd7a98ac70dd6ee668bc083fa9 393 SUPERFAMILY SSF55031 185 303 3.59E-28 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain RAM_27225 fa8784bd7a98ac70dd6ee668bc083fa9 393 Pfam PF01546 Peptidase family M20/M25/M40 72 385 4.8E-37 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 RAM_07775 84510fee0521979d74affe3a61e87f35 395 Pfam PF07470 Glycosyl Hydrolase Family 88 51 390 1.4E-74 T 13-10-2018 IPR010905 Glycosyl hydrolase, family 88 RAM_07775 84510fee0521979d74affe3a61e87f35 395 SUPERFAMILY SSF48208 66 393 2.21E-56 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_07775 84510fee0521979d74affe3a61e87f35 395 Gene3D G3DSA:1.50.10.10 41 394 1.6E-106 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 RAM_08765 c64cc59fa670b920efc40f468fe2da5d 937 Pfam PF00486 Transcriptional regulatory protein, C terminal 37 93 2.4E-6 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_08765 c64cc59fa670b920efc40f468fe2da5d 937 SUPERFAMILY SSF52540 268 529 5.24E-23 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_08765 c64cc59fa670b920efc40f468fe2da5d 937 PRINTS PR00364 Disease resistance protein signature 373 387 2.1E-7 T 13-10-2018 RAM_08765 c64cc59fa670b920efc40f468fe2da5d 937 PRINTS PR00364 Disease resistance protein signature 460 474 2.1E-7 T 13-10-2018 RAM_08765 c64cc59fa670b920efc40f468fe2da5d 937 PRINTS PR00364 Disease resistance protein signature 295 310 2.1E-7 T 13-10-2018 RAM_08765 c64cc59fa670b920efc40f468fe2da5d 937 SMART SM00862 31 103 3.5E-10 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_08765 c64cc59fa670b920efc40f468fe2da5d 937 SUPERFAMILY SSF48452 105 265 6.45E-17 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_08765 c64cc59fa670b920efc40f468fe2da5d 937 Gene3D G3DSA:1.25.40.10 108 264 4.5E-37 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_08765 c64cc59fa670b920efc40f468fe2da5d 937 SUPERFAMILY SSF46894 17 103 5.67E-14 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_08765 c64cc59fa670b920efc40f468fe2da5d 937 Gene3D G3DSA:1.25.40.10 540 808 2.3E-13 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_08765 c64cc59fa670b920efc40f468fe2da5d 937 SMART SM01043 110 252 3.5E-31 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_08765 c64cc59fa670b920efc40f468fe2da5d 937 SMART SM00028 836 869 66.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_08765 c64cc59fa670b920efc40f468fe2da5d 937 SMART SM00028 756 789 5.1 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_08765 c64cc59fa670b920efc40f468fe2da5d 937 SMART SM00028 716 749 320.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_08765 c64cc59fa670b920efc40f468fe2da5d 937 Gene3D G3DSA:1.25.40.10 809 924 7.6E-12 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_08765 c64cc59fa670b920efc40f468fe2da5d 937 SUPERFAMILY SSF48452 707 914 4.75E-18 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_08765 c64cc59fa670b920efc40f468fe2da5d 937 Pfam PF13374 Tetratricopeptide repeat 755 787 0.006 T 13-10-2018 RAM_08765 c64cc59fa670b920efc40f468fe2da5d 937 Gene3D G3DSA:1.10.10.10 10 105 1.8E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_08765 c64cc59fa670b920efc40f468fe2da5d 937 Gene3D G3DSA:3.40.50.300 265 415 5.3E-26 T 13-10-2018 RAM_08765 c64cc59fa670b920efc40f468fe2da5d 937 Pfam PF03704 Bacterial transcriptional activator domain 110 252 9.6E-30 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_13660 66560d7e936da69d73cea63a89e6be86 699 Pfam PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region 110 394 3.6E-36 T 13-10-2018 IPR002469 Dipeptidylpeptidase IV, N-terminal domain GO:0006508 RAM_13660 66560d7e936da69d73cea63a89e6be86 699 Pfam PF00326 Prolyl oligopeptidase family 493 691 3.8E-48 T 13-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 RAM_13660 66560d7e936da69d73cea63a89e6be86 699 Gene3D G3DSA:3.40.50.1820 442 691 8.3E-66 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_13660 66560d7e936da69d73cea63a89e6be86 699 SUPERFAMILY SSF82171 106 388 1.7E-32 T 13-10-2018 RAM_13660 66560d7e936da69d73cea63a89e6be86 699 SUPERFAMILY SSF53474 443 689 1.5E-59 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_13660 66560d7e936da69d73cea63a89e6be86 699 Gene3D G3DSA:2.140.10.30 12 436 3.7E-86 T 13-10-2018 IPR038554 Dipeptidylpeptidase IV, N-terminal domain superfamily RAM_32305 04dc94522a5bcd9c40e3efd98f2cdefd 544 Pfam PF00753 Metallo-beta-lactamase superfamily 10 167 8.0E-15 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_32305 04dc94522a5bcd9c40e3efd98f2cdefd 544 TIGRFAM TIGR00649 MG423: beta-CASP ribonuclease, RNase J family 2 541 5.2E-146 T 13-10-2018 IPR004613 Ribonuclease J GO:0003723|GO:0046872 RAM_32305 04dc94522a5bcd9c40e3efd98f2cdefd 544 Gene3D G3DSA:3.60.15.10 2 428 1.3E-171 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_32305 04dc94522a5bcd9c40e3efd98f2cdefd 544 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 353 390 5.4E-9 T 13-10-2018 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain RAM_32305 04dc94522a5bcd9c40e3efd98f2cdefd 544 Gene3D G3DSA:3.10.20.580 441 544 3.4E-15 T 13-10-2018 RAM_32305 04dc94522a5bcd9c40e3efd98f2cdefd 544 SMART SM00849 13 207 2.9E-22 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_32305 04dc94522a5bcd9c40e3efd98f2cdefd 544 Hamap MF_01491 Ribonuclease J [rnj]. 1 544 39.564 T 13-10-2018 IPR030854 Ribonuclease J, bacteria GO:0004521|GO:0004534|GO:0006396|GO:0008270|GO:0090501 RAM_32305 04dc94522a5bcd9c40e3efd98f2cdefd 544 SUPERFAMILY SSF56281 1 416 2.41E-94 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_32305 04dc94522a5bcd9c40e3efd98f2cdefd 544 PIRSF PIRSF004803 1 544 3.0E-194 T 13-10-2018 IPR030854 Ribonuclease J, bacteria GO:0004521|GO:0004534|GO:0006396|GO:0008270|GO:0090501 RAM_32305 04dc94522a5bcd9c40e3efd98f2cdefd 544 Gene3D G3DSA:3.40.50.10710 199 357 1.3E-171 T 13-10-2018 RAM_32305 04dc94522a5bcd9c40e3efd98f2cdefd 544 ProSitePatterns PS01292 Uncharacterized protein family UPF0036 signature. 356 384 - T 13-10-2018 IPR001587 Ribonuclease J, conserved site RAM_43195 b59ac28dd3a1fbc4dde4eaf0d1d1cc7c 149 Pfam PF02627 Carboxymuconolactone decarboxylase family 11 92 8.5E-15 T 13-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RAM_43195 b59ac28dd3a1fbc4dde4eaf0d1d1cc7c 149 SUPERFAMILY SSF69118 10 143 7.71E-37 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_43195 b59ac28dd3a1fbc4dde4eaf0d1d1cc7c 149 Gene3D G3DSA:1.20.1290.10 6 147 2.5E-39 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_43195 b59ac28dd3a1fbc4dde4eaf0d1d1cc7c 149 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 28 76 9.7E-10 T 13-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RAM_38110 5db96315e5387b0f019ef8eef17dead8 390 Pfam PF07745 Glycosyl hydrolase family 53 35 384 1.4E-99 T 13-10-2018 IPR011683 Glycosyl hydrolase family 53 GO:0015926 RAM_38110 5db96315e5387b0f019ef8eef17dead8 390 Gene3D G3DSA:3.20.20.80 17 388 4.2E-116 T 13-10-2018 RAM_38110 5db96315e5387b0f019ef8eef17dead8 390 SUPERFAMILY SSF51445 31 387 1.58E-73 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_47595 028f4d419c18bbb91c8a0ee1a29c27a8 212 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 1 12 2.7E-6 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_47595 028f4d419c18bbb91c8a0ee1a29c27a8 212 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 142 162 2.7E-6 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_47595 028f4d419c18bbb91c8a0ee1a29c27a8 212 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 124 140 2.7E-6 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_47595 028f4d419c18bbb91c8a0ee1a29c27a8 212 Gene3D G3DSA:1.10.150.240 16 82 3.6E-48 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 RAM_47595 028f4d419c18bbb91c8a0ee1a29c27a8 212 Gene3D G3DSA:3.40.50.1000 3 197 3.6E-48 T 13-10-2018 IPR023214 HAD superfamily RAM_47595 028f4d419c18bbb91c8a0ee1a29c27a8 212 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 47 179 4.0E-16 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_47595 028f4d419c18bbb91c8a0ee1a29c27a8 212 Pfam PF13419 Haloacid dehalogenase-like hydrolase 4 180 1.3E-21 T 13-10-2018 RAM_47595 028f4d419c18bbb91c8a0ee1a29c27a8 212 SUPERFAMILY SSF56784 1 209 1.76E-50 T 13-10-2018 IPR036412 HAD-like superfamily RAM_41555 e43c562c312bd75fc33ae5bdb293ae14 830 Pfam PF13671 AAA domain 10 135 2.9E-22 T 13-10-2018 RAM_41555 e43c562c312bd75fc33ae5bdb293ae14 830 Gene3D G3DSA:3.30.470.30 615 830 4.5E-75 T 13-10-2018 RAM_41555 e43c562c312bd75fc33ae5bdb293ae14 830 SUPERFAMILY SSF56300 146 404 1.68E-42 T 13-10-2018 RAM_41555 e43c562c312bd75fc33ae5bdb293ae14 830 SUPERFAMILY SSF56091 503 738 1.55E-13 T 13-10-2018 RAM_41555 e43c562c312bd75fc33ae5bdb293ae14 830 Gene3D G3DSA:3.30.470.30 426 611 1.7E-67 T 13-10-2018 RAM_41555 e43c562c312bd75fc33ae5bdb293ae14 830 Pfam PF16536 PNKP adenylyltransferase domain, C-terminal region 771 830 1.7E-32 T 13-10-2018 IPR032390 Polynucleotide kinase-phosphatase, C-terminal RAM_41555 e43c562c312bd75fc33ae5bdb293ae14 830 Gene3D G3DSA:3.60.21.10 171 413 2.6E-71 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like RAM_41555 e43c562c312bd75fc33ae5bdb293ae14 830 SUPERFAMILY SSF52540 3 133 2.34E-14 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_41555 e43c562c312bd75fc33ae5bdb293ae14 830 TIGRFAM TIGR04075 bacter_Pnkp: polynucleotide kinase-phosphatase 2 830 0.0 T 13-10-2018 IPR024028 Polynucleotide kinase-phosphatase, bacterial RAM_41555 e43c562c312bd75fc33ae5bdb293ae14 830 Pfam PF00149 Calcineurin-like phosphoesterase 181 364 2.2E-9 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 RAM_41555 e43c562c312bd75fc33ae5bdb293ae14 830 Gene3D G3DSA:3.40.50.300 1 170 6.6E-47 T 13-10-2018 RAM_41555 e43c562c312bd75fc33ae5bdb293ae14 830 Pfam PF16542 PNKP adenylyltransferase domain, ligase domain 456 767 9.5E-144 T 13-10-2018 IPR032380 Polynucleotide kinase-phosphatase, ligase domain RAM_16745 591691d70c68e27f3137d0c651bb1666 491 Gene3D G3DSA:2.80.10.50 358 489 2.8E-38 T 13-10-2018 RAM_16745 591691d70c68e27f3137d0c651bb1666 491 SUPERFAMILY SSF49899 40 355 5.54E-95 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily RAM_16745 591691d70c68e27f3137d0c651bb1666 491 Pfam PF09206 Alpha-L-arabinofuranosidase B, catalytic 41 353 7.7E-133 T 13-10-2018 IPR015289 Alpha-L-arabinofuranosidase B, catalytic GO:0031221|GO:0046556 KEGG: 00520+3.2.1.55 RAM_16745 591691d70c68e27f3137d0c651bb1666 491 SUPERFAMILY SSF50370 360 490 1.34E-37 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_16745 591691d70c68e27f3137d0c651bb1666 491 Gene3D G3DSA:2.60.120.200 39 357 2.5E-134 T 13-10-2018 RAM_16745 591691d70c68e27f3137d0c651bb1666 491 SMART SM00458 362 491 2.7E-29 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_16745 591691d70c68e27f3137d0c651bb1666 491 Pfam PF00652 Ricin-type beta-trefoil lectin domain 362 488 5.6E-27 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_41550 1d1865043bcdbc10dc3b908397afea12 455 Gene3D G3DSA:3.30.1610.20 1 225 3.8E-102 T 13-10-2018 IPR038546 Hen1, N-terminal domain superfamily RAM_41550 1d1865043bcdbc10dc3b908397afea12 455 TIGRFAM TIGR04074 bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1 2 448 1.8E-198 T 13-10-2018 IPR024026 3'-RNA ribose 2'-O-methyltransferase, Hen1, bacterial RAM_41550 1d1865043bcdbc10dc3b908397afea12 455 Pfam PF12623 RNA repair, ligase-Pnkp-associating, region of Hen1 1 237 2.6E-109 T 13-10-2018 IPR024740 Hen1, N-terminal RAM_41550 1d1865043bcdbc10dc3b908397afea12 455 SUPERFAMILY SSF53335 267 417 8.96E-23 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_41550 1d1865043bcdbc10dc3b908397afea12 455 Gene3D G3DSA:3.40.50.150 250 455 4.5E-65 T 13-10-2018 RAM_41550 1d1865043bcdbc10dc3b908397afea12 455 Pfam PF13489 Methyltransferase domain 244 415 2.4E-13 T 13-10-2018 RAM_11465 c8e23a0ddc01701677b4d4b470af5815 441 Pfam PF00815 Histidinol dehydrogenase 22 436 2.8E-155 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RAM_11465 c8e23a0ddc01701677b4d4b470af5815 441 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 7 436 38.685 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RAM_11465 c8e23a0ddc01701677b4d4b470af5815 441 Gene3D G3DSA:3.40.50.1980 237 380 2.2E-49 T 13-10-2018 RAM_11465 c8e23a0ddc01701677b4d4b470af5815 441 SUPERFAMILY SSF53720 23 436 8.44E-70 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RAM_11465 c8e23a0ddc01701677b4d4b470af5815 441 PRINTS PR00083 Histidinol dehydrogenase signature 35 59 2.0E-89 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RAM_11465 c8e23a0ddc01701677b4d4b470af5815 441 PRINTS PR00083 Histidinol dehydrogenase signature 173 199 2.0E-89 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RAM_11465 c8e23a0ddc01701677b4d4b470af5815 441 PRINTS PR00083 Histidinol dehydrogenase signature 208 233 2.0E-89 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RAM_11465 c8e23a0ddc01701677b4d4b470af5815 441 PRINTS PR00083 Histidinol dehydrogenase signature 259 278 2.0E-89 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RAM_11465 c8e23a0ddc01701677b4d4b470af5815 441 PRINTS PR00083 Histidinol dehydrogenase signature 370 388 2.0E-89 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RAM_11465 c8e23a0ddc01701677b4d4b470af5815 441 PRINTS PR00083 Histidinol dehydrogenase signature 237 258 2.0E-89 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RAM_11465 c8e23a0ddc01701677b4d4b470af5815 441 PRINTS PR00083 Histidinol dehydrogenase signature 329 354 2.0E-89 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RAM_11465 c8e23a0ddc01701677b4d4b470af5815 441 PRINTS PR00083 Histidinol dehydrogenase signature 136 162 2.0E-89 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RAM_11465 c8e23a0ddc01701677b4d4b470af5815 441 PIRSF PIRSF000099 1 438 2.9E-151 T 13-10-2018 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RAM_11465 c8e23a0ddc01701677b4d4b470af5815 441 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 237 269 - T 13-10-2018 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23 RAM_11465 c8e23a0ddc01701677b4d4b470af5815 441 Gene3D G3DSA:3.40.50.1980 30 236 7.1E-61 T 13-10-2018 RAM_11465 c8e23a0ddc01701677b4d4b470af5815 441 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 35 435 1.5E-140 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RAM_36800 1718a443dfad1aade70aa81c6cc086f7 324 SUPERFAMILY SSF50129 2 138 1.52E-36 T 13-10-2018 IPR011032 GroES-like superfamily RAM_36800 1718a443dfad1aade70aa81c6cc086f7 324 Pfam PF00107 Zinc-binding dehydrogenase 151 264 6.8E-27 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RAM_36800 1718a443dfad1aade70aa81c6cc086f7 324 Gene3D G3DSA:3.40.50.720 120 289 1.2E-87 T 13-10-2018 RAM_36800 1718a443dfad1aade70aa81c6cc086f7 324 SMART SM00829 10 319 6.2E-28 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_36800 1718a443dfad1aade70aa81c6cc086f7 324 SUPERFAMILY SSF51735 111 267 3.45E-41 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_36800 1718a443dfad1aade70aa81c6cc086f7 324 Gene3D G3DSA:3.90.180.10 8 317 1.2E-87 T 13-10-2018 RAM_36800 1718a443dfad1aade70aa81c6cc086f7 324 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 88 7.2E-10 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_35460 65454760fffc7d335b2959a7d5317f26 728 Gene3D G3DSA:2.60.120.260 46 185 1.4E-5 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_35460 65454760fffc7d335b2959a7d5317f26 728 SUPERFAMILY SSF51126 179 450 6.44E-36 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor RAM_35460 65454760fffc7d335b2959a7d5317f26 728 Gene3D G3DSA:2.160.20.10 198 486 1.7E-33 T 13-10-2018 IPR012334 Pectin lyase fold RAM_35460 65454760fffc7d335b2959a7d5317f26 728 Gene3D G3DSA:2.60.120.260 590 728 7.4E-33 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_35460 65454760fffc7d335b2959a7d5317f26 728 Pfam PF00754 F5/8 type C domain 599 722 1.3E-19 T 13-10-2018 IPR000421 Coagulation factor 5/8 C-terminal domain RAM_35460 65454760fffc7d335b2959a7d5317f26 728 Pfam PF05048 Periplasmic copper-binding protein (NosD) 306 424 8.0E-10 T 13-10-2018 IPR007742 Periplasmic copper-binding protein NosD, beta helix domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 RAM_35460 65454760fffc7d335b2959a7d5317f26 728 SUPERFAMILY SSF49785 584 725 5.67E-27 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_35460 65454760fffc7d335b2959a7d5317f26 728 SMART SM00231 590 728 3.3E-5 T 13-10-2018 IPR000421 Coagulation factor 5/8 C-terminal domain RAM_35460 65454760fffc7d335b2959a7d5317f26 728 SMART SM00710 294 316 4300.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_35460 65454760fffc7d335b2959a7d5317f26 728 SMART SM00710 352 374 0.3 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_35460 65454760fffc7d335b2959a7d5317f26 728 SMART SM00710 403 427 740.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_35460 65454760fffc7d335b2959a7d5317f26 728 SMART SM00710 256 280 4700.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_35460 65454760fffc7d335b2959a7d5317f26 728 SMART SM00710 379 402 400.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_35460 65454760fffc7d335b2959a7d5317f26 728 SMART SM00710 503 543 3400.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_35460 65454760fffc7d335b2959a7d5317f26 728 SMART SM00710 328 350 0.25 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_37540 9698e0424ca5fcde884e18faba4cfce7 295 SUPERFAMILY SSF56112 63 251 8.6E-14 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_37540 9698e0424ca5fcde884e18faba4cfce7 295 Gene3D G3DSA:3.90.1200.10 119 294 2.1E-7 T 13-10-2018 RAM_26345 43287584acaa65b8207b794916ab0990 613 Pfam PF00350 Dynamin family 48 211 2.9E-20 T 13-10-2018 IPR022812 Dynamin superfamily RAM_26345 43287584acaa65b8207b794916ab0990 613 Gene3D G3DSA:3.40.50.300 48 282 1.6E-29 T 13-10-2018 RAM_26345 43287584acaa65b8207b794916ab0990 613 SUPERFAMILY SSF52540 29 243 2.31E-32 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_40665 e16749908ece00f00f3b76b0065c8191 156 Pfam PF00293 NUDIX domain 20 133 2.0E-21 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RAM_40665 e16749908ece00f00f3b76b0065c8191 156 Gene3D G3DSA:3.90.79.10 7 153 1.0E-36 T 13-10-2018 RAM_40665 e16749908ece00f00f3b76b0065c8191 156 SUPERFAMILY SSF55811 6 149 3.52E-34 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RAM_40665 e16749908ece00f00f3b76b0065c8191 156 ProSitePatterns PS00893 Nudix box signature. 49 70 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RAM_40665 e16749908ece00f00f3b76b0065c8191 156 PRINTS PR00502 NUDIX hydrolase family signature 44 58 4.9E-7 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RAM_40665 e16749908ece00f00f3b76b0065c8191 156 PRINTS PR00502 NUDIX hydrolase family signature 58 73 4.9E-7 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RAM_21220 9f90b2d4c129f161c61bb291de381b21 1825 Gene3D G3DSA:3.30.470.130 1 452 2.0E-167 T 13-10-2018 RAM_21220 9f90b2d4c129f161c61bb291de381b21 1825 Gene3D G3DSA:3.90.226.10 1250 1503 7.8E-35 T 13-10-2018 RAM_21220 9f90b2d4c129f161c61bb291de381b21 1825 Gene3D G3DSA:2.40.50.100 581 655 4.6E-15 T 13-10-2018 RAM_21220 9f90b2d4c129f161c61bb291de381b21 1825 Pfam PF02785 Biotin carboxylase C-terminal domain 339 448 3.7E-35 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RAM_21220 9f90b2d4c129f161c61bb291de381b21 1825 Pfam PF00364 Biotin-requiring enzyme 589 654 1.3E-8 T 13-10-2018 IPR000089 Biotin/lipoyl attachment RAM_21220 9f90b2d4c129f161c61bb291de381b21 1825 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 120 327 5.0E-59 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RAM_21220 9f90b2d4c129f161c61bb291de381b21 1825 SUPERFAMILY SSF56059 88 328 8.31E-56 T 13-10-2018 RAM_21220 9f90b2d4c129f161c61bb291de381b21 1825 Pfam PF01039 Carboxyl transferase domain 1330 1820 6.4E-30 T 13-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 RAM_21220 9f90b2d4c129f161c61bb291de381b21 1825 SUPERFAMILY SSF52440 2 118 1.06E-32 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RAM_21220 9f90b2d4c129f161c61bb291de381b21 1825 SUPERFAMILY SSF52096 1518 1821 1.82E-36 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_21220 9f90b2d4c129f161c61bb291de381b21 1825 SUPERFAMILY SSF52096 1291 1497 8.53E-22 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_21220 9f90b2d4c129f161c61bb291de381b21 1825 Gene3D G3DSA:3.90.226.10 1512 1825 1.3E-56 T 13-10-2018 RAM_21220 9f90b2d4c129f161c61bb291de381b21 1825 SUPERFAMILY SSF51246 334 449 1.57E-35 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 RAM_21220 9f90b2d4c129f161c61bb291de381b21 1825 SMART SM00878 339 447 3.2E-50 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RAM_21220 9f90b2d4c129f161c61bb291de381b21 1825 Pfam PF00289 Biotin carboxylase, N-terminal domain 2 115 1.5E-33 T 13-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RAM_21220 9f90b2d4c129f161c61bb291de381b21 1825 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 291 298 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RAM_21220 9f90b2d4c129f161c61bb291de381b21 1825 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 158 172 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RAM_21220 9f90b2d4c129f161c61bb291de381b21 1825 SUPERFAMILY SSF51230 580 655 1.57E-14 T 13-10-2018 IPR011053 Single hybrid motif RAM_21220 9f90b2d4c129f161c61bb291de381b21 1825 Pfam PF08326 Acetyl-CoA carboxylase, central region 1012 1203 5.8E-19 T 13-10-2018 IPR013537 Acetyl-CoA carboxylase, central domain GO:0003989|GO:0005524|GO:0006633 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-7388|Reactome: R-HSA-163765|Reactome: R-HSA-196780|Reactome: R-HSA-200425|Reactome: R-HSA-2426168 RAM_16105 abb14ffe19ca7b09a1dec9cff9a1f3ad 173 Gene3D G3DSA:1.10.10.10 1 88 2.0E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_16105 abb14ffe19ca7b09a1dec9cff9a1f3ad 173 Pfam PF03551 Transcriptional regulator PadR-like family 7 77 5.1E-15 T 13-10-2018 IPR005149 Transcription regulator PadR, N-terminal RAM_16105 abb14ffe19ca7b09a1dec9cff9a1f3ad 173 SUPERFAMILY SSF46785 3 167 3.22E-32 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_31110 82e801b2fcab604a43b8fbb1c85597a6 315 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 107 310 7.9E-15 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_31110 82e801b2fcab604a43b8fbb1c85597a6 315 SUPERFAMILY SSF161098 23 311 1.1E-51 T 13-10-2018 IPR035906 MetI-like superfamily RAM_31110 82e801b2fcab604a43b8fbb1c85597a6 315 Gene3D G3DSA:1.10.3720.10 68 313 5.3E-58 T 13-10-2018 IPR035906 MetI-like superfamily RAM_26005 79d008940e3dea13031157630c4b20a9 477 SMART SM00729 75 300 4.6E-24 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 RAM_26005 79d008940e3dea13031157630c4b20a9 477 Pfam PF04055 Radical SAM superfamily 82 251 5.2E-16 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RAM_26005 79d008940e3dea13031157630c4b20a9 477 SUPERFAMILY SSF102114 69 473 3.92E-63 T 13-10-2018 RAM_26005 79d008940e3dea13031157630c4b20a9 477 Gene3D G3DSA:3.80.30.20 56 398 3.3E-57 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe RAM_02790 c393dcc618d7cbfbf2853e8888f12848 265 SUPERFAMILY SSF55909 2 264 5.89E-50 T 13-10-2018 RAM_02790 c393dcc618d7cbfbf2853e8888f12848 265 Pfam PF02274 Amidinotransferase 53 263 2.5E-11 T 13-10-2018 RAM_02790 c393dcc618d7cbfbf2853e8888f12848 265 Gene3D G3DSA:3.75.10.10 10 261 1.7E-55 T 13-10-2018 RAM_15655 139f3753b628a1c722c525cf91c0c629 313 SUPERFAMILY SSF46689 209 257 8.98E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_15655 139f3753b628a1c722c525cf91c0c629 313 Gene3D G3DSA:1.10.10.60 204 311 4.8E-31 T 13-10-2018 RAM_15655 139f3753b628a1c722c525cf91c0c629 313 SUPERFAMILY SSF52317 1 189 2.9E-47 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_15655 139f3753b628a1c722c525cf91c0c629 313 Pfam PF12833 Helix-turn-helix domain 230 308 1.9E-23 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_15655 139f3753b628a1c722c525cf91c0c629 313 SUPERFAMILY SSF46689 260 311 4.18E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_15655 139f3753b628a1c722c525cf91c0c629 313 Pfam PF01965 DJ-1/PfpI family 3 169 3.9E-23 T 13-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 RAM_15655 139f3753b628a1c722c525cf91c0c629 313 Gene3D G3DSA:3.40.50.880 1 196 4.2E-56 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_15655 139f3753b628a1c722c525cf91c0c629 313 SMART SM00342 224 307 1.8E-29 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_13710 734e28e9dac9eaa52347b671d82d4545 997 SUPERFAMILY SSF46894 5 79 1.84E-8 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_13710 734e28e9dac9eaa52347b671d82d4545 997 Pfam PF03704 Bacterial transcriptional activator domain 98 236 1.6E-18 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_13710 734e28e9dac9eaa52347b671d82d4545 997 Pfam PF13191 AAA ATPase domain 252 418 1.1E-24 T 13-10-2018 RAM_13710 734e28e9dac9eaa52347b671d82d4545 997 SUPERFAMILY SSF52540 250 492 1.81E-9 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_13710 734e28e9dac9eaa52347b671d82d4545 997 Gene3D G3DSA:1.25.40.10 601 790 1.5E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_13710 734e28e9dac9eaa52347b671d82d4545 997 SMART SM00862 18 90 0.002 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_13710 734e28e9dac9eaa52347b671d82d4545 997 Gene3D G3DSA:1.10.10.10 1 89 4.1E-10 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_13710 734e28e9dac9eaa52347b671d82d4545 997 SMART SM01043 98 237 2.5E-31 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_13710 734e28e9dac9eaa52347b671d82d4545 997 Gene3D G3DSA:1.25.40.10 96 253 3.8E-24 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_13710 734e28e9dac9eaa52347b671d82d4545 997 SUPERFAMILY SSF48452 108 249 2.15E-15 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_13665 507f1ddb894348d05f05f48385bb4329 316 Pfam PF00296 Luciferase-like monooxygenase 13 293 1.5E-49 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_13665 507f1ddb894348d05f05f48385bb4329 316 TIGRFAM TIGR03841 F420_Rv3093c: probable F420-dependent oxidoreductase, Rv3093c family 12 300 5.6E-99 T 13-10-2018 IPR022526 F420-dependent oxidoreductase, Rv3093c RAM_13665 507f1ddb894348d05f05f48385bb4329 316 Gene3D G3DSA:3.20.20.30 3 315 3.3E-60 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_13665 507f1ddb894348d05f05f48385bb4329 316 SUPERFAMILY SSF51679 4 309 2.47E-52 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_45190 3db22205cbf1ca54934e11add8a4d5b3 276 SUPERFAMILY SSF56784 21 228 1.36E-26 T 13-10-2018 IPR036412 HAD-like superfamily RAM_45190 3db22205cbf1ca54934e11add8a4d5b3 276 Pfam PF12710 haloacid dehalogenase-like hydrolase 22 207 4.9E-32 T 13-10-2018 RAM_45190 3db22205cbf1ca54934e11add8a4d5b3 276 Gene3D G3DSA:3.40.50.1000 22 233 8.6E-66 T 13-10-2018 IPR023214 HAD superfamily RAM_45190 3db22205cbf1ca54934e11add8a4d5b3 276 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 21 208 5.6E-18 T 13-10-2018 RAM_45190 3db22205cbf1ca54934e11add8a4d5b3 276 Gene3D G3DSA:1.20.1440.100 33 108 8.6E-66 T 13-10-2018 RAM_45190 3db22205cbf1ca54934e11add8a4d5b3 276 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 21 219 2.0E-57 T 13-10-2018 IPR006385 HAD-superfamily hydrolase, subfamily IB, SerB1-like RAM_14435 5798d26017aca6d6b8dac67135bf7b3f 408 Pfam PF07730 Histidine kinase 210 275 2.9E-17 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_14435 5798d26017aca6d6b8dac67135bf7b3f 408 SUPERFAMILY SSF55874 294 403 7.9E-8 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_14435 5798d26017aca6d6b8dac67135bf7b3f 408 Gene3D G3DSA:3.30.565.10 284 404 3.4E-25 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_47430 5301e5886b9b72e960f494d219e73a3b 192 Pfam PF14436 Bacterial EndoU nuclease 10 76 6.7E-10 T 13-10-2018 IPR029501 Bacterial EndoU nuclease RAM_23095 c514a75249a260b063abafac1b421f5e 683 SMART SM00736 179 268 0.0014 T 13-10-2018 IPR006644 Dystroglycan-type cadherin-like GO:0016020 RAM_23095 c514a75249a260b063abafac1b421f5e 683 SUPERFAMILY SSF55486 472 676 1.08E-36 T 13-10-2018 RAM_23095 c514a75249a260b063abafac1b421f5e 683 Pfam PF05345 Putative Ig domain 210 249 4.2E-10 T 13-10-2018 IPR008009 Putative Ig RAM_23095 c514a75249a260b063abafac1b421f5e 683 SUPERFAMILY SSF49313 179 263 1.13E-13 T 13-10-2018 IPR015919 Cadherin-like superfamily GO:0005509|GO:0016020 RAM_23095 c514a75249a260b063abafac1b421f5e 683 Gene3D G3DSA:2.60.120.260 23 170 1.2E-7 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_23095 c514a75249a260b063abafac1b421f5e 683 Pfam PF01433 Peptidase family M1 domain 476 677 1.6E-13 T 13-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RAM_23095 c514a75249a260b063abafac1b421f5e 683 Gene3D G3DSA:2.60.40.10 176 262 6.5E-26 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_23095 c514a75249a260b063abafac1b421f5e 683 Gene3D G3DSA:1.10.390.60 468 679 8.1E-28 T 13-10-2018 RAM_27725 c684fe3055b190e6e713b3183a895af4 476 Gene3D G3DSA:1.20.1250.20 1 460 2.6E-103 T 13-10-2018 RAM_27725 c684fe3055b190e6e713b3183a895af4 476 SUPERFAMILY SSF103473 7 175 7.46E-13 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_27725 c684fe3055b190e6e713b3183a895af4 476 SUPERFAMILY SSF103473 197 452 3.01E-12 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_27725 c684fe3055b190e6e713b3183a895af4 476 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 1 452 1.8E-93 T 13-10-2018 IPR005279 Dipeptide/tripeptide permease GO:0015833|GO:0016020|GO:1904680 RAM_27725 c684fe3055b190e6e713b3183a895af4 476 Pfam PF00854 POT family 85 426 3.6E-46 T 13-10-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-427975 RAM_30930 e7676883dcde7ef9c8374ad83f13afdd 426 Pfam PF00579 tRNA synthetases class I (W and Y) 32 327 5.7E-77 T 13-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 RAM_30930 e7676883dcde7ef9c8374ad83f13afdd 426 SUPERFAMILY SSF52374 4 327 5.38E-94 T 13-10-2018 RAM_30930 e7676883dcde7ef9c8374ad83f13afdd 426 Hamap MF_02006 Tyrosine--tRNA ligase [tyrS]. 3 424 43.055 T 13-10-2018 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 GO:0004831 KEGG: 00970+6.1.1.1 RAM_30930 e7676883dcde7ef9c8374ad83f13afdd 426 SUPERFAMILY SSF55174 330 422 1.26E-13 T 13-10-2018 RAM_30930 e7676883dcde7ef9c8374ad83f13afdd 426 Gene3D G3DSA:1.10.240.10 226 329 1.8E-35 T 13-10-2018 RAM_30930 e7676883dcde7ef9c8374ad83f13afdd 426 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 43 53 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 RAM_30930 e7676883dcde7ef9c8374ad83f13afdd 426 Gene3D G3DSA:3.10.290.10 330 424 1.0E-27 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 RAM_30930 e7676883dcde7ef9c8374ad83f13afdd 426 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 186 208 3.8E-27 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 RAM_30930 e7676883dcde7ef9c8374ad83f13afdd 426 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 47 69 3.8E-27 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 RAM_30930 e7676883dcde7ef9c8374ad83f13afdd 426 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 219 231 3.8E-27 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 RAM_30930 e7676883dcde7ef9c8374ad83f13afdd 426 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 165 180 3.8E-27 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 RAM_30930 e7676883dcde7ef9c8374ad83f13afdd 426 Gene3D G3DSA:3.40.50.620 1 225 1.8E-81 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAM_30930 e7676883dcde7ef9c8374ad83f13afdd 426 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 4 422 1.4E-107 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 RAM_16900 77f9f8def2398321b97d1e94cbe286c5 764 SUPERFAMILY SSF48452 489 618 1.29E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_16900 77f9f8def2398321b97d1e94cbe286c5 764 Gene3D G3DSA:3.40.50.300 4 155 3.2E-20 T 13-10-2018 RAM_16900 77f9f8def2398321b97d1e94cbe286c5 764 Pfam PF00196 Bacterial regulatory proteins, luxR family 702 755 6.0E-16 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_16900 77f9f8def2398321b97d1e94cbe286c5 764 PRINTS PR00364 Disease resistance protein signature 38 53 7.0E-7 T 13-10-2018 RAM_16900 77f9f8def2398321b97d1e94cbe286c5 764 PRINTS PR00364 Disease resistance protein signature 105 119 7.0E-7 T 13-10-2018 RAM_16900 77f9f8def2398321b97d1e94cbe286c5 764 PRINTS PR00364 Disease resistance protein signature 209 223 7.0E-7 T 13-10-2018 RAM_16900 77f9f8def2398321b97d1e94cbe286c5 764 SUPERFAMILY SSF46894 697 757 2.24E-17 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_16900 77f9f8def2398321b97d1e94cbe286c5 764 SMART SM00421 699 756 8.7E-22 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_16900 77f9f8def2398321b97d1e94cbe286c5 764 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 732 744 2.6E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_16900 77f9f8def2398321b97d1e94cbe286c5 764 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 716 732 2.6E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_16900 77f9f8def2398321b97d1e94cbe286c5 764 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 702 716 2.6E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_16900 77f9f8def2398321b97d1e94cbe286c5 764 ProSitePatterns PS00622 LuxR-type HTH domain signature. 716 743 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_16900 77f9f8def2398321b97d1e94cbe286c5 764 SUPERFAMILY SSF52540 11 237 3.94E-18 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_16900 77f9f8def2398321b97d1e94cbe286c5 764 Gene3D G3DSA:1.10.10.10 644 761 5.9E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_16900 77f9f8def2398321b97d1e94cbe286c5 764 Gene3D G3DSA:1.25.40.10 430 643 4.7E-9 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_35765 e2462d74f81662d41251fb3f4af19cf9 777 SUPERFAMILY SSF52540 25 238 8.9E-8 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_35765 e2462d74f81662d41251fb3f4af19cf9 777 Pfam PF13191 AAA ATPase domain 13 191 6.5E-8 T 13-10-2018 RAM_09025 95639ed51c6da512b71bba8b19227eae 334 Pfam PF02470 MlaD protein 37 113 8.8E-17 T 13-10-2018 IPR003399 Mce/MlaD RAM_09025 95639ed51c6da512b71bba8b19227eae 334 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 12 293 6.2E-64 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_36320 e8d7fef4af8e42f46ea893beacc5656f 339 SUPERFAMILY SSF50494 120 336 2.74E-54 T 13-10-2018 IPR009003 Peptidase S1, PA clan RAM_36320 e8d7fef4af8e42f46ea893beacc5656f 339 Pfam PF13365 Trypsin-like peptidase domain 146 300 4.3E-34 T 13-10-2018 RAM_36320 e8d7fef4af8e42f46ea893beacc5656f 339 PRINTS PR00834 HtrA/DegQ protease family signature 271 288 1.3E-27 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAM_36320 e8d7fef4af8e42f46ea893beacc5656f 339 PRINTS PR00834 HtrA/DegQ protease family signature 155 167 1.3E-27 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAM_36320 e8d7fef4af8e42f46ea893beacc5656f 339 PRINTS PR00834 HtrA/DegQ protease family signature 176 196 1.3E-27 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAM_36320 e8d7fef4af8e42f46ea893beacc5656f 339 PRINTS PR00834 HtrA/DegQ protease family signature 293 310 1.3E-27 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAM_36320 e8d7fef4af8e42f46ea893beacc5656f 339 Gene3D G3DSA:2.40.10.10 207 339 1.0E-42 T 13-10-2018 RAM_36320 e8d7fef4af8e42f46ea893beacc5656f 339 Gene3D G3DSA:2.40.10.10 114 206 6.3E-27 T 13-10-2018 RAM_11130 57b0ec1f25c862b6b2e0d79c17e9ba55 329 PRINTS PR00069 Aldo-keto reductase signature 40 64 3.4E-5 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_11130 57b0ec1f25c862b6b2e0d79c17e9ba55 329 PRINTS PR00069 Aldo-keto reductase signature 106 124 3.4E-5 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_11130 57b0ec1f25c862b6b2e0d79c17e9ba55 329 PRINTS PR00069 Aldo-keto reductase signature 137 154 3.4E-5 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_11130 57b0ec1f25c862b6b2e0d79c17e9ba55 329 Gene3D G3DSA:3.20.20.100 1 325 2.1E-113 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_11130 57b0ec1f25c862b6b2e0d79c17e9ba55 329 Pfam PF00248 Aldo/keto reductase family 15 314 4.6E-75 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain RAM_11130 57b0ec1f25c862b6b2e0d79c17e9ba55 329 SUPERFAMILY SSF51430 1 315 5.11E-97 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_42755 dd7c7d1f51773fb7feba7832d8e5f65d 227 Gene3D G3DSA:3.90.550.10 6 221 8.0E-53 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_42755 dd7c7d1f51773fb7feba7832d8e5f65d 227 Pfam PF09837 Uncharacterized protein conserved in bacteria (DUF2064) 43 169 3.8E-27 T 13-10-2018 IPR018641 Transferase 1, rSAM/selenodomain-associated RAM_42755 dd7c7d1f51773fb7feba7832d8e5f65d 227 SUPERFAMILY SSF53448 9 209 6.47E-25 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_05960 3b4b8c77b5e6c921c8d99fafde77490f 402 PIRSF PIRSF036922 1 402 2.0E-170 T 13-10-2018 IPR014636 RNase H, phosphoglycerate mutase domain-containing RAM_05960 3b4b8c77b5e6c921c8d99fafde77490f 402 SUPERFAMILY SSF53098 2 125 4.68E-33 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily RAM_05960 3b4b8c77b5e6c921c8d99fafde77490f 402 SMART SM00855 197 357 4.4E-20 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 RAM_05960 3b4b8c77b5e6c921c8d99fafde77490f 402 SUPERFAMILY SSF53254 195 401 6.28E-56 T 13-10-2018 IPR029033 Histidine phosphatase superfamily RAM_05960 3b4b8c77b5e6c921c8d99fafde77490f 402 Pfam PF13456 Reverse transcriptase-like 5 126 3.0E-26 T 13-10-2018 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 RAM_05960 3b4b8c77b5e6c921c8d99fafde77490f 402 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 198 396 5.1E-59 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 RAM_05960 3b4b8c77b5e6c921c8d99fafde77490f 402 Gene3D G3DSA:3.40.50.1240 196 402 5.7E-57 T 13-10-2018 IPR029033 Histidine phosphatase superfamily RAM_05960 3b4b8c77b5e6c921c8d99fafde77490f 402 Gene3D G3DSA:3.30.420.10 1 135 1.6E-41 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RAM_07630 2fdde0e3928e3d08b06d8804a0bfad33 572 Pfam PF08348 YheO-like PAS domain 385 483 1.1E-25 T 13-10-2018 IPR013559 YheO-like RAM_07630 2fdde0e3928e3d08b06d8804a0bfad33 572 Pfam PF13309 HTH domain 510 568 1.3E-18 T 13-10-2018 IPR039445 Transcriptional regulator DauR-like, HTH domain RAM_07630 2fdde0e3928e3d08b06d8804a0bfad33 572 Gene3D G3DSA:3.40.640.10 28 276 2.5E-52 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_07630 2fdde0e3928e3d08b06d8804a0bfad33 572 Pfam PF00266 Aminotransferase class-V 87 335 5.6E-21 T 13-10-2018 IPR000192 Aminotransferase class V domain RAM_07630 2fdde0e3928e3d08b06d8804a0bfad33 572 Gene3D G3DSA:3.90.1150.10 18 349 2.5E-52 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_07630 2fdde0e3928e3d08b06d8804a0bfad33 572 ProDom PD037769 DNA-BINDING YHEO UNCHARACTERIZED BACTERIA SIMILAR HI0575 CONTAINING TRANSCRIPTION REGULATOR HELIX-TURN-HELIX 382 482 4.0E-18 T 13-10-2018 IPR013559 YheO-like RAM_07630 2fdde0e3928e3d08b06d8804a0bfad33 572 SUPERFAMILY SSF53383 11 362 7.44E-50 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_40240 7088af0a9e54e9ab7021304cee85a1c4 612 Gene3D G3DSA:2.60.40.1180 380 478 1.1E-6 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta RAM_40240 7088af0a9e54e9ab7021304cee85a1c4 612 Pfam PF00652 Ricin-type beta-trefoil lectin domain 487 610 2.4E-28 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_40240 7088af0a9e54e9ab7021304cee85a1c4 612 SMART SM00458 487 612 3.6E-29 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_40240 7088af0a9e54e9ab7021304cee85a1c4 612 Gene3D G3DSA:2.80.10.50 484 611 1.9E-42 T 13-10-2018 RAM_40240 7088af0a9e54e9ab7021304cee85a1c4 612 SUPERFAMILY SSF50370 485 611 3.11E-40 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_40240 7088af0a9e54e9ab7021304cee85a1c4 612 SUPERFAMILY SSF51445 63 382 1.94E-35 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_40240 7088af0a9e54e9ab7021304cee85a1c4 612 Gene3D G3DSA:3.20.20.80 62 344 8.0E-54 T 13-10-2018 RAM_06170 966a34c62d123aa1877dee4d5578a3b0 779 SMART SM00958 233 347 1.1E-26 T 13-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 RAM_06170 966a34c62d123aa1877dee4d5578a3b0 779 Pfam PF01043 SecA preprotein cross-linking domain 242 347 3.4E-21 T 13-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 RAM_06170 966a34c62d123aa1877dee4d5578a3b0 779 Pfam PF07516 SecA Wing and Scaffold domain 637 728 5.0E-13 T 13-10-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 RAM_06170 966a34c62d123aa1877dee4d5578a3b0 779 Pfam PF07517 SecA DEAD-like domain 14 390 2.0E-89 T 13-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 RAM_06170 966a34c62d123aa1877dee4d5578a3b0 779 SUPERFAMILY SSF81767 241 355 3.79E-28 T 13-10-2018 IPR036670 SecA, preprotein cross-linking domain superfamily GO:0016020|GO:0017038 RAM_06170 966a34c62d123aa1877dee4d5578a3b0 779 ProSitePatterns PS01312 SecA family signature. 489 504 - T 13-10-2018 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 RAM_06170 966a34c62d123aa1877dee4d5578a3b0 779 TIGRFAM TIGR04221 SecA2_Mycobac: accessory Sec system translocase SecA2 11 775 0.0 T 13-10-2018 IPR026389 Protein translocase subunit SecA, Actinobacteria-type RAM_06170 966a34c62d123aa1877dee4d5578a3b0 779 PRINTS PR00906 SecA protein signature 176 196 8.8E-39 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RAM_06170 966a34c62d123aa1877dee4d5578a3b0 779 PRINTS PR00906 SecA protein signature 69 93 8.8E-39 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RAM_06170 966a34c62d123aa1877dee4d5578a3b0 779 PRINTS PR00906 SecA protein signature 328 350 8.8E-39 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RAM_06170 966a34c62d123aa1877dee4d5578a3b0 779 PRINTS PR00906 SecA protein signature 123 133 8.8E-39 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RAM_06170 966a34c62d123aa1877dee4d5578a3b0 779 PRINTS PR00906 SecA protein signature 365 382 8.8E-39 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RAM_06170 966a34c62d123aa1877dee4d5578a3b0 779 PRINTS PR00906 SecA protein signature 107 121 8.8E-39 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RAM_06170 966a34c62d123aa1877dee4d5578a3b0 779 PRINTS PR00906 SecA protein signature 402 415 8.8E-39 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RAM_06170 966a34c62d123aa1877dee4d5578a3b0 779 Hamap MF_01382 Protein translocase subunit SecA [secA]. 11 734 15.505 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RAM_06170 966a34c62d123aa1877dee4d5578a3b0 779 Gene3D G3DSA:3.90.1440.10 235 357 2.1E-124 T 13-10-2018 RAM_06170 966a34c62d123aa1877dee4d5578a3b0 779 SUPERFAMILY SSF52540 13 404 3.31E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_06170 966a34c62d123aa1877dee4d5578a3b0 779 Gene3D G3DSA:3.40.50.300 509 581 1.3E-18 T 13-10-2018 RAM_06170 966a34c62d123aa1877dee4d5578a3b0 779 Gene3D G3DSA:3.40.50.300 406 508 7.0E-36 T 13-10-2018 RAM_06170 966a34c62d123aa1877dee4d5578a3b0 779 SMART SM00957 12 391 1.7E-148 T 13-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 RAM_06170 966a34c62d123aa1877dee4d5578a3b0 779 SUPERFAMILY SSF52540 406 567 2.88E-41 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_06170 966a34c62d123aa1877dee4d5578a3b0 779 SUPERFAMILY SSF81886 588 734 1.44E-24 T 13-10-2018 IPR036266 SecA, Wing/Scaffold superfamily RAM_06170 966a34c62d123aa1877dee4d5578a3b0 779 Gene3D G3DSA:1.10.3060.10 588 737 3.0E-22 T 13-10-2018 RAM_06170 966a34c62d123aa1877dee4d5578a3b0 779 Gene3D G3DSA:3.40.50.300 30 404 2.1E-124 T 13-10-2018 RAM_08300 2a0438b1ea0c2ce4f296332ce83df865 418 Gene3D G3DSA:3.40.50.1100 55 154 6.3E-105 T 13-10-2018 RAM_08300 2a0438b1ea0c2ce4f296332ce83df865 418 TIGRFAM TIGR02079 THD1: threonine dehydratase 11 418 1.3E-171 T 13-10-2018 IPR011820 L-threonine dehydratase biosynthetic IlvA GO:0004794 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 RAM_08300 2a0438b1ea0c2ce4f296332ce83df865 418 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 47 60 - T 13-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 RAM_08300 2a0438b1ea0c2ce4f296332ce83df865 418 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 20 312 1.5E-77 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RAM_08300 2a0438b1ea0c2ce4f296332ce83df865 418 SUPERFAMILY SSF53686 11 362 3.01E-94 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RAM_08300 2a0438b1ea0c2ce4f296332ce83df865 418 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 325 417 8.6E-25 T 13-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 RAM_08300 2a0438b1ea0c2ce4f296332ce83df865 418 Gene3D G3DSA:3.40.50.1100 21 323 6.3E-105 T 13-10-2018 RAM_08300 2a0438b1ea0c2ce4f296332ce83df865 418 Gene3D G3DSA:3.40.1020.10 324 417 3.4E-7 T 13-10-2018 IPR038110 Threonine dehydratase, ACT-like domain superfamily KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 RAM_03040 9b53d1f82d8082fe210498961541a4c6 288 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 100 288 1.2E-62 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 RAM_03040 9b53d1f82d8082fe210498961541a4c6 288 Gene3D G3DSA:3.30.70.940 95 212 7.8E-41 T 13-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 RAM_03040 9b53d1f82d8082fe210498961541a4c6 288 SMART SM00738 97 205 2.2E-51 T 13-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 RAM_03040 9b53d1f82d8082fe210498961541a4c6 288 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 97 288 23.789 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 RAM_03040 9b53d1f82d8082fe210498961541a4c6 288 SUPERFAMILY SSF50104 232 288 4.71E-17 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily RAM_03040 9b53d1f82d8082fe210498961541a4c6 288 PRINTS PR00338 Transcription termination factor NUSG signature 246 261 1.5E-19 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 RAM_03040 9b53d1f82d8082fe210498961541a4c6 288 PRINTS PR00338 Transcription termination factor NUSG signature 264 280 1.5E-19 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 RAM_03040 9b53d1f82d8082fe210498961541a4c6 288 PRINTS PR00338 Transcription termination factor NUSG signature 152 164 1.5E-19 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 RAM_03040 9b53d1f82d8082fe210498961541a4c6 288 ProSitePatterns PS01014 Transcription termination factor nusG signature. 271 280 - T 13-10-2018 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site RAM_03040 9b53d1f82d8082fe210498961541a4c6 288 Gene3D G3DSA:2.30.30.30 227 288 3.9E-24 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 RAM_03040 9b53d1f82d8082fe210498961541a4c6 288 SUPERFAMILY SSF82679 99 202 3.27E-36 T 13-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 RAM_03040 9b53d1f82d8082fe210498961541a4c6 288 Pfam PF02357 Transcription termination factor nusG 99 201 2.3E-25 T 13-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 RAM_26540 d6192878c18efa5941e9b7195a455cf3 321 TIGRFAM TIGR03557 F420_G6P_family: F420-dependent oxidoreductase, G6PDH family 3 320 1.4E-144 T 13-10-2018 IPR019945 F420-dependent glucose-6-phosphate dehydrogenase-related RAM_26540 d6192878c18efa5941e9b7195a455cf3 321 SUPERFAMILY SSF51679 1 320 6.62E-61 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_26540 d6192878c18efa5941e9b7195a455cf3 321 Gene3D G3DSA:3.20.20.30 1 320 7.0E-63 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_26540 d6192878c18efa5941e9b7195a455cf3 321 Pfam PF00296 Luciferase-like monooxygenase 1 292 4.8E-48 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_16665 3e6ed284575bb25c439f3fee2cb3fc83 226 Gene3D G3DSA:1.10.357.10 2 224 7.1E-72 T 13-10-2018 RAM_16665 3e6ed284575bb25c439f3fee2cb3fc83 226 SUPERFAMILY SSF48498 90 219 3.78E-26 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_16665 3e6ed284575bb25c439f3fee2cb3fc83 226 SUPERFAMILY SSF46689 8 78 6.98E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_16665 3e6ed284575bb25c439f3fee2cb3fc83 226 Pfam PF00440 Bacterial regulatory proteins, tetR family 21 64 1.6E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_04535 f0e10811ad8538538c44cc0a9005f881 205 SUPERFAMILY SSF46689 3 74 4.93E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_04535 f0e10811ad8538538c44cc0a9005f881 205 SUPERFAMILY SSF48498 84 189 6.28E-25 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_04535 f0e10811ad8538538c44cc0a9005f881 205 Pfam PF13305 WHG domain 88 173 4.1E-13 T 13-10-2018 IPR025996 WHG domain RAM_04535 f0e10811ad8538538c44cc0a9005f881 205 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 61 5.9E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_04535 f0e10811ad8538538c44cc0a9005f881 205 Gene3D G3DSA:1.10.357.10 1 195 3.7E-45 T 13-10-2018 RAM_27545 fe2f11b0dea633347f28ff3f2c17040a 213 Gene3D G3DSA:3.40.50.12740 3 211 1.0E-72 T 13-10-2018 RAM_27545 fe2f11b0dea633347f28ff3f2c17040a 213 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 205 9.1E-20 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_27545 fe2f11b0dea633347f28ff3f2c17040a 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 181 193 9.0E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_27545 fe2f11b0dea633347f28ff3f2c17040a 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 151 165 9.0E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_27545 fe2f11b0dea633347f28ff3f2c17040a 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 165 181 9.0E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_27545 fe2f11b0dea633347f28ff3f2c17040a 213 SMART SM00448 3 116 1.8E-31 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_27545 fe2f11b0dea633347f28ff3f2c17040a 213 Pfam PF00072 Response regulator receiver domain 5 117 9.1E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_27545 fe2f11b0dea633347f28ff3f2c17040a 213 SUPERFAMILY SSF46894 136 211 7.82E-22 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_27545 fe2f11b0dea633347f28ff3f2c17040a 213 ProSitePatterns PS00622 LuxR-type HTH domain signature. 165 192 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_27545 fe2f11b0dea633347f28ff3f2c17040a 213 SMART SM00421 148 205 4.4E-24 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_27545 fe2f11b0dea633347f28ff3f2c17040a 213 SUPERFAMILY SSF52172 3 133 6.4E-35 T 13-10-2018 IPR011006 CheY-like superfamily RAM_39945 a883677a02a0c679be9a12288b9f9b5c 312 PRINTS PR00126 ATP synthase gamma subunit signature 283 304 1.4E-35 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RAM_39945 a883677a02a0c679be9a12288b9f9b5c 312 PRINTS PR00126 ATP synthase gamma subunit signature 180 197 1.4E-35 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RAM_39945 a883677a02a0c679be9a12288b9f9b5c 312 PRINTS PR00126 ATP synthase gamma subunit signature 75 94 1.4E-35 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RAM_39945 a883677a02a0c679be9a12288b9f9b5c 312 PRINTS PR00126 ATP synthase gamma subunit signature 252 271 1.4E-35 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RAM_39945 a883677a02a0c679be9a12288b9f9b5c 312 Hamap MF_00815 ATP synthase gamma chain [atpG]. 2 305 34.645 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RAM_39945 a883677a02a0c679be9a12288b9f9b5c 312 SUPERFAMILY SSF52943 3 305 1.18E-82 T 13-10-2018 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RAM_39945 a883677a02a0c679be9a12288b9f9b5c 312 Gene3D G3DSA:3.40.1380.10 62 224 2.3E-94 T 13-10-2018 RAM_39945 a883677a02a0c679be9a12288b9f9b5c 312 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 3 305 5.2E-99 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RAM_39945 a883677a02a0c679be9a12288b9f9b5c 312 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 291 304 - T 13-10-2018 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RAM_39945 a883677a02a0c679be9a12288b9f9b5c 312 Pfam PF00231 ATP synthase 4 305 5.7E-90 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RAM_39945 a883677a02a0c679be9a12288b9f9b5c 312 Gene3D G3DSA:1.10.287.80 7 301 2.3E-94 T 13-10-2018 RAM_26250 ee4fe79abd540ed703ceb73633cc61e2 854 Gene3D G3DSA:2.80.10.50 804 854 8.1E-13 T 13-10-2018 RAM_26250 ee4fe79abd540ed703ceb73633cc61e2 854 SMART SM00458 716 854 9.9E-5 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_26250 ee4fe79abd540ed703ceb73633cc61e2 854 SUPERFAMILY SSF50370 719 854 5.57E-35 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_26250 ee4fe79abd540ed703ceb73633cc61e2 854 Pfam PF08760 Domain of unknown function (DUF1793) 544 709 3.7E-52 T 13-10-2018 IPR014870 Domain of unknown function DUF1793 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2 RAM_26250 ee4fe79abd540ed703ceb73633cc61e2 854 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 761 841 1.7E-19 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_26250 ee4fe79abd540ed703ceb73633cc61e2 854 Pfam PF17168 Domain of unknown function (DUF5127) 127 355 2.5E-69 T 13-10-2018 IPR033433 Domain of unknown function DUF5127 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2 RAM_26250 ee4fe79abd540ed703ceb73633cc61e2 854 Pfam PF16334 Domain of unknown function (DUF4964) 48 108 1.9E-13 T 13-10-2018 IPR032515 Domain of unknown function DUF4964 RAM_26250 ee4fe79abd540ed703ceb73633cc61e2 854 Gene3D G3DSA:2.80.10.50 669 803 4.7E-21 T 13-10-2018 RAM_26250 ee4fe79abd540ed703ceb73633cc61e2 854 Pfam PF16335 Domain of unknown function (DUF4965) 366 538 6.8E-69 T 13-10-2018 IPR032514 Domain of unknown function DUF4965 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2 RAM_39165 172dc28f1e9ade93e9522b6edc43f9f1 309 SUPERFAMILY SSF52540 4 228 1.36E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_39165 172dc28f1e9ade93e9522b6edc43f9f1 309 Gene3D G3DSA:3.40.50.300 2 236 1.2E-60 T 13-10-2018 RAM_39165 172dc28f1e9ade93e9522b6edc43f9f1 309 Pfam PF00005 ABC transporter 22 164 1.1E-25 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_39165 172dc28f1e9ade93e9522b6edc43f9f1 309 SMART SM00382 30 213 6.0E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_39165 172dc28f1e9ade93e9522b6edc43f9f1 309 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_22540 d5e01ec3986a7fe5de9fb34d550b3277 417 Pfam PF04030 D-arabinono-1,4-lactone oxidase 290 413 1.8E-12 T 13-10-2018 IPR007173 D-arabinono-1,4-lactone oxidase GO:0003885|GO:0016020|GO:0055114 RAM_22540 d5e01ec3986a7fe5de9fb34d550b3277 417 Gene3D G3DSA:1.10.45.10 381 415 2.8E-12 T 13-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 RAM_22540 d5e01ec3986a7fe5de9fb34d550b3277 417 Pfam PF01565 FAD binding domain 17 148 3.6E-17 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RAM_22540 d5e01ec3986a7fe5de9fb34d550b3277 417 SUPERFAMILY SSF56176 6 177 5.32E-30 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RAM_22540 d5e01ec3986a7fe5de9fb34d550b3277 417 Gene3D G3DSA:3.30.43.10 3 65 1.3E-18 T 13-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 RAM_22540 d5e01ec3986a7fe5de9fb34d550b3277 417 Gene3D G3DSA:3.30.70.2530 180 269 5.2E-84 T 13-10-2018 RAM_22540 d5e01ec3986a7fe5de9fb34d550b3277 417 Gene3D G3DSA:3.30.465.10 75 286 5.2E-84 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 RAM_22540 d5e01ec3986a7fe5de9fb34d550b3277 417 Gene3D G3DSA:3.30.70.2520 288 380 4.3E-34 T 13-10-2018 RAM_17095 434c30329692b8c0e32f5e10e0dbadc7 238 SMART SM00062 16 237 7.6E-14 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RAM_17095 434c30329692b8c0e32f5e10e0dbadc7 238 Gene3D G3DSA:3.40.190.10 34 221 1.6E-21 T 13-10-2018 RAM_17095 434c30329692b8c0e32f5e10e0dbadc7 238 SUPERFAMILY SSF53850 31 226 2.92E-25 T 13-10-2018 RAM_17095 434c30329692b8c0e32f5e10e0dbadc7 238 Gene3D G3DSA:3.40.190.10 101 190 1.6E-21 T 13-10-2018 RAM_17095 434c30329692b8c0e32f5e10e0dbadc7 238 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 28 220 9.8E-17 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RAM_39640 4b2c310775db09174acdcf4110c4ea00 331 Gene3D G3DSA:3.60.70.12 1 325 3.0E-122 T 13-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 RAM_39640 4b2c310775db09174acdcf4110c4ea00 331 SUPERFAMILY SSF56266 2 323 1.07E-73 T 13-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 RAM_39640 4b2c310775db09174acdcf4110c4ea00 331 Pfam PF03576 Peptidase family S58 2 314 1.7E-74 T 13-10-2018 IPR005321 Peptidase S58, DmpA RAM_15860 ba477d6dca8ae1cd0a0b669d93a76772 275 SUPERFAMILY SSF46955 12 79 1.47E-10 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily RAM_15860 ba477d6dca8ae1cd0a0b669d93a76772 275 Gene3D G3DSA:3.40.50.280 160 239 5.2E-13 T 13-10-2018 RAM_15860 ba477d6dca8ae1cd0a0b669d93a76772 275 Gene3D G3DSA:1.10.1660.10 8 81 7.0E-18 T 13-10-2018 RAM_15860 ba477d6dca8ae1cd0a0b669d93a76772 275 SMART SM00422 12 80 0.0013 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_15860 ba477d6dca8ae1cd0a0b669d93a76772 275 Pfam PF13411 MerR HTH family regulatory protein 13 74 3.8E-13 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_19455 cdf54336a9c3859cc8480018bbda2092 214 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 65 3.1E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_19455 cdf54336a9c3859cc8480018bbda2092 214 Gene3D G3DSA:1.10.10.60 8 60 9.0E-9 T 13-10-2018 RAM_19455 cdf54336a9c3859cc8480018bbda2092 214 SUPERFAMILY SSF46689 16 86 1.33E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_19455 cdf54336a9c3859cc8480018bbda2092 214 SUPERFAMILY SSF48498 85 194 3.06E-8 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_19455 cdf54336a9c3859cc8480018bbda2092 214 Gene3D G3DSA:1.10.357.10 61 200 2.4E-15 T 13-10-2018 RAM_47970 9f2a186e5eeda79e5efe6f9f7421b207 382 Pfam PF01471 Putative peptidoglycan binding domain 91 144 5.6E-17 T 13-10-2018 IPR002477 Peptidoglycan binding-like RAM_47970 9f2a186e5eeda79e5efe6f9f7421b207 382 Pfam PF01471 Putative peptidoglycan binding domain 10 69 4.4E-11 T 13-10-2018 IPR002477 Peptidoglycan binding-like RAM_47970 9f2a186e5eeda79e5efe6f9f7421b207 382 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 180 353 9.4E-37 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 RAM_47970 9f2a186e5eeda79e5efe6f9f7421b207 382 SUPERFAMILY SSF53187 177 356 2.95E-42 T 13-10-2018 RAM_47970 9f2a186e5eeda79e5efe6f9f7421b207 382 Gene3D G3DSA:1.10.101.10 81 155 3.0E-20 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 RAM_47970 9f2a186e5eeda79e5efe6f9f7421b207 382 SMART SM00646 238 353 2.9E-27 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 RAM_47970 9f2a186e5eeda79e5efe6f9f7421b207 382 SUPERFAMILY SSF47090 2 69 2.35E-13 T 13-10-2018 IPR036365 PGBD-like superfamily RAM_47970 9f2a186e5eeda79e5efe6f9f7421b207 382 Gene3D G3DSA:1.10.101.10 1 73 1.2E-14 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 RAM_47970 9f2a186e5eeda79e5efe6f9f7421b207 382 Gene3D G3DSA:3.40.630.40 176 357 6.9E-38 T 13-10-2018 RAM_47970 9f2a186e5eeda79e5efe6f9f7421b207 382 SUPERFAMILY SSF47090 82 148 4.71E-19 T 13-10-2018 IPR036365 PGBD-like superfamily RAM_34090 9966168b4cec686d689899171dc32277 260 Pfam PF00795 Carbon-nitrogen hydrolase 4 240 2.8E-59 T 13-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 RAM_34090 9966168b4cec686d689899171dc32277 260 SUPERFAMILY SSF56317 3 257 7.19E-72 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily RAM_34090 9966168b4cec686d689899171dc32277 260 Gene3D G3DSA:3.60.110.10 1 260 9.7E-96 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily RAM_09655 9ab214a97e06f1bd0a02a0a2a08a44cc 1200 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 1182 3.6E-71 T 13-10-2018 IPR003395 RecF/RecN/SMC, N-terminal RAM_09655 9ab214a97e06f1bd0a02a0a2a08a44cc 1200 SUPERFAMILY SSF75553 470 671 8.76E-29 T 13-10-2018 IPR036277 SMCs flexible hinge superfamily GO:0005515|GO:0005524|GO:0005694|GO:0051276 RAM_09655 9ab214a97e06f1bd0a02a0a2a08a44cc 1200 Gene3D G3DSA:1.20.1060.20 500 655 3.6E-24 T 13-10-2018 RAM_09655 9ab214a97e06f1bd0a02a0a2a08a44cc 1200 Gene3D G3DSA:3.40.50.300 1 246 3.3E-56 T 13-10-2018 RAM_09655 9ab214a97e06f1bd0a02a0a2a08a44cc 1200 Gene3D G3DSA:3.30.70.1620 571 653 3.6E-24 T 13-10-2018 RAM_09655 9ab214a97e06f1bd0a02a0a2a08a44cc 1200 Pfam PF06470 SMC proteins Flexible Hinge Domain 512 626 3.8E-20 T 13-10-2018 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 RAM_09655 9ab214a97e06f1bd0a02a0a2a08a44cc 1200 SUPERFAMILY SSF52540 2 1182 1.05E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_09655 9ab214a97e06f1bd0a02a0a2a08a44cc 1200 SMART SM00968 512 626 2.0E-23 T 13-10-2018 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 RAM_09655 9ab214a97e06f1bd0a02a0a2a08a44cc 1200 Gene3D G3DSA:3.40.50.300 975 1198 2.8E-42 T 13-10-2018 RAM_09655 9ab214a97e06f1bd0a02a0a2a08a44cc 1200 Hamap MF_01894 Chromosome partition protein Smc [smc]. 1 1191 22.082 T 13-10-2018 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 RAM_09655 9ab214a97e06f1bd0a02a0a2a08a44cc 1200 PIRSF PIRSF005719 1 1197 4.4E-255 T 13-10-2018 IPR024704 Structural maintenance of chromosomes protein RAM_09655 9ab214a97e06f1bd0a02a0a2a08a44cc 1200 TIGRFAM TIGR02168 SMC_prok_B: chromosome segregation protein SMC 3 1189 1.2E-291 T 13-10-2018 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 RAM_41760 6a0977319cfd631e9d35af49326589df 449 PRINTS PR01036 Tetracycline resistance protein TetB signature 107 127 4.2E-8 T 13-10-2018 RAM_41760 6a0977319cfd631e9d35af49326589df 449 PRINTS PR01036 Tetracycline resistance protein TetB signature 259 284 4.2E-8 T 13-10-2018 RAM_41760 6a0977319cfd631e9d35af49326589df 449 PRINTS PR01036 Tetracycline resistance protein TetB signature 388 407 4.2E-8 T 13-10-2018 RAM_41760 6a0977319cfd631e9d35af49326589df 449 PRINTS PR01036 Tetracycline resistance protein TetB signature 137 161 4.2E-8 T 13-10-2018 RAM_41760 6a0977319cfd631e9d35af49326589df 449 Gene3D G3DSA:1.20.1720.10 13 243 3.6E-45 T 13-10-2018 RAM_41760 6a0977319cfd631e9d35af49326589df 449 SUPERFAMILY SSF103473 3 437 7.85E-55 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_41760 6a0977319cfd631e9d35af49326589df 449 Gene3D G3DSA:1.20.1250.20 251 440 2.7E-16 T 13-10-2018 RAM_41760 6a0977319cfd631e9d35af49326589df 449 Pfam PF07690 Major Facilitator Superfamily 18 397 4.5E-43 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_31765 0b8a1114229066c2eb6e46a648175a0c 216 Pfam PF00072 Response regulator receiver domain 5 118 6.3E-22 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_31765 0b8a1114229066c2eb6e46a648175a0c 216 Pfam PF00196 Bacterial regulatory proteins, luxR family 154 209 9.5E-18 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_31765 0b8a1114229066c2eb6e46a648175a0c 216 ProSitePatterns PS00622 LuxR-type HTH domain signature. 169 196 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_31765 0b8a1114229066c2eb6e46a648175a0c 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 155 169 6.5E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_31765 0b8a1114229066c2eb6e46a648175a0c 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 169 185 6.5E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_31765 0b8a1114229066c2eb6e46a648175a0c 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 185 197 6.5E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_31765 0b8a1114229066c2eb6e46a648175a0c 216 SUPERFAMILY SSF46894 142 215 3.74E-21 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_31765 0b8a1114229066c2eb6e46a648175a0c 216 Gene3D G3DSA:3.40.50.12740 3 215 2.1E-63 T 13-10-2018 RAM_31765 0b8a1114229066c2eb6e46a648175a0c 216 SUPERFAMILY SSF52172 2 135 4.27E-29 T 13-10-2018 IPR011006 CheY-like superfamily RAM_31765 0b8a1114229066c2eb6e46a648175a0c 216 SMART SM00448 3 118 4.3E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_31765 0b8a1114229066c2eb6e46a648175a0c 216 SMART SM00421 152 209 4.1E-22 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_24765 843ef5f81f283f67f8a447f6df1ab6ad 300 Gene3D G3DSA:3.40.190.10 164 268 1.1E-46 T 13-10-2018 RAM_24765 843ef5f81f283f67f8a447f6df1ab6ad 300 SUPERFAMILY SSF46785 4 112 1.15E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_24765 843ef5f81f283f67f8a447f6df1ab6ad 300 Gene3D G3DSA:3.40.190.10 96 286 1.1E-46 T 13-10-2018 RAM_24765 843ef5f81f283f67f8a447f6df1ab6ad 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 2.1E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_24765 843ef5f81f283f67f8a447f6df1ab6ad 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 2.1E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_24765 843ef5f81f283f67f8a447f6df1ab6ad 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 2.1E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_24765 843ef5f81f283f67f8a447f6df1ab6ad 300 Pfam PF03466 LysR substrate binding domain 92 289 1.5E-38 T 13-10-2018 IPR005119 LysR, substrate-binding RAM_24765 843ef5f81f283f67f8a447f6df1ab6ad 300 Gene3D G3DSA:1.10.10.10 4 94 1.7E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_24765 843ef5f81f283f67f8a447f6df1ab6ad 300 SUPERFAMILY SSF53850 92 293 3.88E-35 T 13-10-2018 RAM_24765 843ef5f81f283f67f8a447f6df1ab6ad 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 1.7E-20 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_03180 b582df0b93b7ccbe04db996142277555 260 SUPERFAMILY SSF54001 2 255 1.5E-60 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily RAM_03180 b582df0b93b7ccbe04db996142277555 260 PRINTS PR01543 Arylamine N-acetyltransferase signature 105 130 5.4E-6 T 13-10-2018 IPR001447 Arylamine N-acetyltransferase GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 RAM_03180 b582df0b93b7ccbe04db996142277555 260 PRINTS PR01543 Arylamine N-acetyltransferase signature 22 45 5.4E-6 T 13-10-2018 IPR001447 Arylamine N-acetyltransferase GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 RAM_03180 b582df0b93b7ccbe04db996142277555 260 Pfam PF00797 N-acetyltransferase 22 252 1.3E-63 T 13-10-2018 IPR001447 Arylamine N-acetyltransferase GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 RAM_03180 b582df0b93b7ccbe04db996142277555 260 Gene3D G3DSA:3.30.2140.10 5 253 3.2E-52 T 13-10-2018 RAM_03180 b582df0b93b7ccbe04db996142277555 260 Gene3D G3DSA:2.40.128.150 89 184 3.2E-52 T 13-10-2018 RAM_19430 0ffb9a8bc928333b313039421275f105 256 SUPERFAMILY SSF51735 5 249 9.3E-73 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_19430 0ffb9a8bc928333b313039421275f105 256 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_19430 0ffb9a8bc928333b313039421275f105 256 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 246 6.6E-58 T 13-10-2018 RAM_19430 0ffb9a8bc928333b313039421275f105 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 1.1E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19430 0ffb9a8bc928333b313039421275f105 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.1E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19430 0ffb9a8bc928333b313039421275f105 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 1.1E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19430 0ffb9a8bc928333b313039421275f105 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 210 230 1.1E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19430 0ffb9a8bc928333b313039421275f105 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 1.1E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19430 0ffb9a8bc928333b313039421275f105 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 1.1E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19430 0ffb9a8bc928333b313039421275f105 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 5.7E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19430 0ffb9a8bc928333b313039421275f105 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 5.7E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19430 0ffb9a8bc928333b313039421275f105 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 5.7E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19430 0ffb9a8bc928333b313039421275f105 256 Gene3D G3DSA:3.40.50.720 3 254 6.9E-68 T 13-10-2018 RAM_12165 dd721339a05d4cde53f39b7d12de0b80 241 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 196 208 6.2E-12 T 13-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 RAM_12165 dd721339a05d4cde53f39b7d12de0b80 241 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 168 179 6.2E-12 T 13-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 RAM_12165 dd721339a05d4cde53f39b7d12de0b80 241 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 157 167 6.2E-12 T 13-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 RAM_12165 dd721339a05d4cde53f39b7d12de0b80 241 TIGRFAM TIGR00498 lexA: repressor LexA 31 240 3.6E-78 T 13-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 RAM_12165 dd721339a05d4cde53f39b7d12de0b80 241 SUPERFAMILY SSF46785 32 98 3.41E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_12165 dd721339a05d4cde53f39b7d12de0b80 241 Gene3D G3DSA:1.10.10.10 32 97 6.3E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_12165 dd721339a05d4cde53f39b7d12de0b80 241 Hamap MF_00015 LexA repressor [lexA]. 32 241 33.653 T 13-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 RAM_12165 dd721339a05d4cde53f39b7d12de0b80 241 Gene3D G3DSA:2.10.109.10 126 241 2.2E-41 T 13-10-2018 RAM_12165 dd721339a05d4cde53f39b7d12de0b80 241 Pfam PF01726 LexA DNA binding domain 31 94 2.5E-26 T 13-10-2018 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 RAM_12165 dd721339a05d4cde53f39b7d12de0b80 241 SUPERFAMILY SSF51306 121 239 6.1E-35 T 13-10-2018 IPR036286 LexA/Signal peptidase-like superfamily RAM_12165 dd721339a05d4cde53f39b7d12de0b80 241 Pfam PF00717 Peptidase S24-like 160 225 1.8E-15 T 13-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C RAM_41135 5e1efe0af2aaa1bb68e3233f5e9a4613 490 PIRSF PIRSF001109 4 490 3.8E-191 T 13-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 RAM_41135 5e1efe0af2aaa1bb68e3233f5e9a4613 490 SUPERFAMILY SSF51735 248 410 2.19E-75 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_41135 5e1efe0af2aaa1bb68e3233f5e9a4613 490 Pfam PF05221 S-adenosyl-L-homocysteine hydrolase 17 489 1.5E-145 T 13-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 RAM_41135 5e1efe0af2aaa1bb68e3233f5e9a4613 490 SMART SM00996 17 489 0.0 T 13-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 RAM_41135 5e1efe0af2aaa1bb68e3233f5e9a4613 490 Gene3D G3DSA:3.40.50.1480 20 490 6.0E-236 T 13-10-2018 RAM_41135 5e1efe0af2aaa1bb68e3233f5e9a4613 490 ProSitePatterns PS00738 S-adenosyl-L-homocysteine hydrolase signature 1. 89 103 - T 13-10-2018 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 RAM_41135 5e1efe0af2aaa1bb68e3233f5e9a4613 490 Gene3D G3DSA:3.40.50.720 251 411 6.0E-236 T 13-10-2018 RAM_41135 5e1efe0af2aaa1bb68e3233f5e9a4613 490 SUPERFAMILY SSF52283 16 490 6.23E-113 T 13-10-2018 RAM_41135 5e1efe0af2aaa1bb68e3233f5e9a4613 490 SMART SM00997 248 410 1.5E-107 T 13-10-2018 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 RAM_41135 5e1efe0af2aaa1bb68e3233f5e9a4613 490 Hamap MF_00563 Adenosylhomocysteinase [ahcY]. 13 482 48.289 T 13-10-2018 IPR034373 Adenosylhomocysteinase GO:0004013|GO:0019510|GO:0051287 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-2408508|Reactome: R-HSA-5578997 RAM_41135 5e1efe0af2aaa1bb68e3233f5e9a4613 490 TIGRFAM TIGR00936 ahcY: adenosylhomocysteinase 18 482 4.2E-191 T 13-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 RAM_41135 5e1efe0af2aaa1bb68e3233f5e9a4613 490 Pfam PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 248 410 4.2E-80 T 13-10-2018 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 RAM_41135 5e1efe0af2aaa1bb68e3233f5e9a4613 490 ProSitePatterns PS00739 S-adenosyl-L-homocysteine hydrolase signature 2. 270 286 - T 13-10-2018 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 RAM_15025 66d68fff85cd8d9c81131cdca25e1417 434 ProSitePatterns PS01135 FtsZ protein signature 2. 94 115 - T 13-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 RAM_15025 66d68fff85cd8d9c81131cdca25e1417 434 SUPERFAMILY SSF52490 9 205 3.4E-65 T 13-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 RAM_15025 66d68fff85cd8d9c81131cdca25e1417 434 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 8 315 2.2E-126 T 13-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 RAM_15025 66d68fff85cd8d9c81131cdca25e1417 434 SUPERFAMILY SSF55307 201 315 1.51E-43 T 13-10-2018 IPR008280 Tubulin/FtsZ, C-terminal Reactome: R-HSA-380320 RAM_15025 66d68fff85cd8d9c81131cdca25e1417 434 Pfam PF12327 FtsZ family, C-terminal domain 219 313 2.5E-35 T 13-10-2018 IPR024757 Cell division protein FtsZ, C-terminal RAM_15025 66d68fff85cd8d9c81131cdca25e1417 434 Gene3D G3DSA:3.30.1330.20 218 324 1.7E-39 T 13-10-2018 IPR037103 Tubulin/FtsZ, C-terminal domain superfamily Reactome: R-HSA-380320 RAM_15025 66d68fff85cd8d9c81131cdca25e1417 434 PRINTS PR00423 Cell division protein FtsZ signature 95 115 1.0E-50 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 RAM_15025 66d68fff85cd8d9c81131cdca25e1417 434 PRINTS PR00423 Cell division protein FtsZ signature 123 144 1.0E-50 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 RAM_15025 66d68fff85cd8d9c81131cdca25e1417 434 PRINTS PR00423 Cell division protein FtsZ signature 209 230 1.0E-50 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 RAM_15025 66d68fff85cd8d9c81131cdca25e1417 434 PRINTS PR00423 Cell division protein FtsZ signature 186 208 1.0E-50 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 RAM_15025 66d68fff85cd8d9c81131cdca25e1417 434 SMART SM00865 204 321 2.8E-55 T 13-10-2018 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-380320 RAM_15025 66d68fff85cd8d9c81131cdca25e1417 434 Gene3D G3DSA:3.40.50.1440 1 217 2.6E-79 T 13-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 RAM_15025 66d68fff85cd8d9c81131cdca25e1417 434 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 6 330 38.188 T 13-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 RAM_15025 66d68fff85cd8d9c81131cdca25e1417 434 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 11 169 3.5E-38 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 RAM_15025 66d68fff85cd8d9c81131cdca25e1417 434 SMART SM00864 10 202 2.6E-106 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 RAM_15025 66d68fff85cd8d9c81131cdca25e1417 434 ProSitePatterns PS01134 FtsZ protein signature 1. 41 75 - T 13-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 RAM_12885 ae76b4979e385e4695761be7d9e891d3 468 SUPERFAMILY SSF103473 2 466 8.89E-44 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_12885 ae76b4979e385e4695761be7d9e891d3 468 Gene3D G3DSA:1.20.1250.20 243 462 4.6E-9 T 13-10-2018 RAM_12885 ae76b4979e385e4695761be7d9e891d3 468 Gene3D G3DSA:1.20.1720.10 1 189 9.8E-31 T 13-10-2018 RAM_12885 ae76b4979e385e4695761be7d9e891d3 468 Pfam PF07690 Major Facilitator Superfamily 3 392 7.5E-35 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_19710 e2d8432e15013138edbf4aeb4322196c 248 Gene3D G3DSA:1.20.120.530 81 235 2.1E-27 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_19710 e2d8432e15013138edbf4aeb4322196c 248 Pfam PF07729 FCD domain 100 228 2.7E-20 T 13-10-2018 IPR011711 GntR, C-terminal RAM_19710 e2d8432e15013138edbf4aeb4322196c 248 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 47 63 1.9E-7 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_19710 e2d8432e15013138edbf4aeb4322196c 248 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 33 47 1.9E-7 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_19710 e2d8432e15013138edbf4aeb4322196c 248 SUPERFAMILY SSF46785 10 82 3.89E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_19710 e2d8432e15013138edbf4aeb4322196c 248 SMART SM00895 100 229 2.6E-21 T 13-10-2018 IPR011711 GntR, C-terminal RAM_19710 e2d8432e15013138edbf4aeb4322196c 248 SUPERFAMILY SSF48008 98 236 3.4E-23 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_19710 e2d8432e15013138edbf4aeb4322196c 248 SMART SM00345 14 75 2.7E-17 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_19710 e2d8432e15013138edbf4aeb4322196c 248 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 69 7.3E-17 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_19710 e2d8432e15013138edbf4aeb4322196c 248 Gene3D G3DSA:1.10.10.10 2 75 4.0E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_19080 9a24e5b6ed7c32df3cab1a0fdb91b292 447 Gene3D G3DSA:3.20.20.80 146 447 3.5E-79 T 13-10-2018 RAM_19080 9a24e5b6ed7c32df3cab1a0fdb91b292 447 Pfam PF00652 Ricin-type beta-trefoil lectin domain 13 135 4.5E-28 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_19080 9a24e5b6ed7c32df3cab1a0fdb91b292 447 Pfam PF02156 Glycosyl hydrolase family 26 153 442 4.9E-61 T 13-10-2018 IPR022790 Glycosyl hydrolase family 26 domain GO:0004553 RAM_19080 9a24e5b6ed7c32df3cab1a0fdb91b292 447 SMART SM00458 11 138 6.4E-31 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_19080 9a24e5b6ed7c32df3cab1a0fdb91b292 447 SUPERFAMILY SSF50370 11 137 1.03E-35 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_19080 9a24e5b6ed7c32df3cab1a0fdb91b292 447 PRINTS PR00739 Glycosyl hydrolase family 26 signature 288 305 1.3E-17 T 13-10-2018 IPR000805 Glycoside hydrolase family 26 GO:0006080|GO:0016985 KEGG: 00051+3.2.1.78|MetaCyc: PWY-7456 RAM_19080 9a24e5b6ed7c32df3cab1a0fdb91b292 447 PRINTS PR00739 Glycosyl hydrolase family 26 signature 349 361 1.3E-17 T 13-10-2018 IPR000805 Glycoside hydrolase family 26 GO:0006080|GO:0016985 KEGG: 00051+3.2.1.78|MetaCyc: PWY-7456 RAM_19080 9a24e5b6ed7c32df3cab1a0fdb91b292 447 PRINTS PR00739 Glycosyl hydrolase family 26 signature 222 236 1.3E-17 T 13-10-2018 IPR000805 Glycoside hydrolase family 26 GO:0006080|GO:0016985 KEGG: 00051+3.2.1.78|MetaCyc: PWY-7456 RAM_19080 9a24e5b6ed7c32df3cab1a0fdb91b292 447 PRINTS PR00739 Glycosyl hydrolase family 26 signature 315 338 1.3E-17 T 13-10-2018 IPR000805 Glycoside hydrolase family 26 GO:0006080|GO:0016985 KEGG: 00051+3.2.1.78|MetaCyc: PWY-7456 RAM_19080 9a24e5b6ed7c32df3cab1a0fdb91b292 447 SUPERFAMILY SSF51445 151 420 9.13E-46 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_19080 9a24e5b6ed7c32df3cab1a0fdb91b292 447 Gene3D G3DSA:2.80.10.50 9 136 4.3E-39 T 13-10-2018 RAM_13260 b8a84136f8fb69fe73f8df962999d277 126 PIRSF PIRSF006910 1 124 4.6E-51 T 13-10-2018 IPR016499 Nucleic acid binding protein, Rv2694c, predicted RAM_13260 b8a84136f8fb69fe73f8df962999d277 126 Gene3D G3DSA:2.40.50.140 37 124 1.6E-6 T 13-10-2018 RAM_25945 8bdf7df0e8fe78c6f4d2402220fa065e 403 SUPERFAMILY SSF103473 26 396 1.11E-48 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_25945 8bdf7df0e8fe78c6f4d2402220fa065e 403 Gene3D G3DSA:1.20.1250.20 22 394 1.0E-44 T 13-10-2018 RAM_25945 8bdf7df0e8fe78c6f4d2402220fa065e 403 Pfam PF07690 Major Facilitator Superfamily 29 235 1.4E-27 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_25945 8bdf7df0e8fe78c6f4d2402220fa065e 403 ProSitePatterns PS00216 Sugar transport proteins signature 1. 82 98 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RAM_40830 9d75a12146a82ef1a9f924f0e045e68a 351 Pfam PF00005 ABC transporter 24 162 2.0E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_40830 9d75a12146a82ef1a9f924f0e045e68a 351 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_40830 9d75a12146a82ef1a9f924f0e045e68a 351 Gene3D G3DSA:3.40.50.300 1 237 6.4E-63 T 13-10-2018 RAM_40830 9d75a12146a82ef1a9f924f0e045e68a 351 SUPERFAMILY SSF52540 4 228 2.57E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_40830 9d75a12146a82ef1a9f924f0e045e68a 351 SMART SM00382 32 211 1.5E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_45525 abd26f116a21fcebb5d55f0616d75c45 350 ProSitePatterns PS01173 Lipolytic enzymes "G-D-X-G" family, putative histidine active site. 116 132 - T 13-10-2018 IPR002168 Lipase, GDXG, putative histidine active site GO:0016787 Reactome: R-HSA-163560 RAM_45525 abd26f116a21fcebb5d55f0616d75c45 350 Gene3D G3DSA:3.40.50.1820 40 349 6.7E-96 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_45525 abd26f116a21fcebb5d55f0616d75c45 350 Pfam PF07859 alpha/beta hydrolase fold 116 322 2.2E-75 T 13-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 RAM_45525 abd26f116a21fcebb5d55f0616d75c45 350 SUPERFAMILY SSF53474 79 345 7.81E-77 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_09830 5df4d8b48a6e2e9fd096fee2443fb483 284 SUPERFAMILY SSF54427 168 279 1.19E-15 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_09830 5df4d8b48a6e2e9fd096fee2443fb483 284 SUPERFAMILY SSF88659 98 156 3.36E-8 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_09830 5df4d8b48a6e2e9fd096fee2443fb483 284 Pfam PF04542 Sigma-70 region 2 8 72 2.4E-14 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_09830 5df4d8b48a6e2e9fd096fee2443fb483 284 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 5 156 2.4E-16 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_09830 5df4d8b48a6e2e9fd096fee2443fb483 284 Pfam PF08281 Sigma-70, region 4 104 154 1.3E-6 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_09830 5df4d8b48a6e2e9fd096fee2443fb483 284 Gene3D G3DSA:1.10.10.10 82 159 2.4E-7 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_09830 5df4d8b48a6e2e9fd096fee2443fb483 284 SUPERFAMILY SSF88946 5 87 2.35E-15 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_09830 5df4d8b48a6e2e9fd096fee2443fb483 284 Gene3D G3DSA:1.10.1740.10 2 75 6.0E-9 T 13-10-2018 RAM_09830 5df4d8b48a6e2e9fd096fee2443fb483 284 Gene3D G3DSA:3.10.450.50 166 280 4.5E-8 T 13-10-2018 RAM_23175 6ef5da86aa013079968fe0657533f699 343 SUPERFAMILY SSF53822 86 342 2.02E-65 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_23175 6ef5da86aa013079968fe0657533f699 343 Gene3D G3DSA:3.40.50.2300 59 320 1.9E-69 T 13-10-2018 RAM_23175 6ef5da86aa013079968fe0657533f699 343 ProSitePatterns PS00356 LacI-type HTH domain signature. 8 26 - T 13-10-2018 RAM_23175 6ef5da86aa013079968fe0657533f699 343 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 7 17 1.8E-6 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_23175 6ef5da86aa013079968fe0657533f699 343 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 17 27 1.8E-6 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_23175 6ef5da86aa013079968fe0657533f699 343 Gene3D G3DSA:1.10.260.40 4 58 3.3E-21 T 13-10-2018 RAM_23175 6ef5da86aa013079968fe0657533f699 343 Gene3D G3DSA:3.40.50.2300 176 303 1.9E-69 T 13-10-2018 RAM_23175 6ef5da86aa013079968fe0657533f699 343 SMART SM00354 5 75 1.6E-22 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_23175 6ef5da86aa013079968fe0657533f699 343 SUPERFAMILY SSF47413 5 63 1.06E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_23175 6ef5da86aa013079968fe0657533f699 343 Pfam PF13377 Periplasmic binding protein-like domain 186 342 3.9E-39 T 13-10-2018 RAM_23175 6ef5da86aa013079968fe0657533f699 343 Pfam PF00356 Bacterial regulatory proteins, lacI family 7 52 2.5E-15 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_36770 f604d2c54c9ea4138578f9a10c4bc3c1 402 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 232 387 3.3E-22 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_36770 f604d2c54c9ea4138578f9a10c4bc3c1 402 Gene3D G3DSA:1.10.540.10 2 120 7.8E-25 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_36770 f604d2c54c9ea4138578f9a10c4bc3c1 402 SUPERFAMILY SSF47203 232 392 2.09E-20 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_36770 f604d2c54c9ea4138578f9a10c4bc3c1 402 Gene3D G3DSA:1.20.140.10 237 394 3.1E-34 T 13-10-2018 RAM_36770 f604d2c54c9ea4138578f9a10c4bc3c1 402 SUPERFAMILY SSF56645 4 245 1.01E-68 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_36770 f604d2c54c9ea4138578f9a10c4bc3c1 402 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 126 218 6.9E-20 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RAM_36770 f604d2c54c9ea4138578f9a10c4bc3c1 402 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 120 1.3E-21 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_36770 f604d2c54c9ea4138578f9a10c4bc3c1 402 Gene3D G3DSA:2.40.110.10 126 236 3.3E-37 T 13-10-2018 RAM_11185 09c98ba023ff5ca8ae9d324a75a45edc 320 SUPERFAMILY SSF103481 199 296 8.24E-15 T 13-10-2018 RAM_11185 09c98ba023ff5ca8ae9d324a75a45edc 320 SUPERFAMILY SSF103481 51 153 1.14E-12 T 13-10-2018 RAM_11185 09c98ba023ff5ca8ae9d324a75a45edc 320 Pfam PF00892 EamA-like transporter family 164 291 2.8E-18 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RAM_11185 09c98ba023ff5ca8ae9d324a75a45edc 320 Pfam PF00892 EamA-like transporter family 27 150 2.3E-11 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RAM_38660 15a8ea2ecb05025af2b2f3c06b0287f9 155 SUPERFAMILY SSF50475 45 154 7.39E-9 T 13-10-2018 RAM_38660 15a8ea2ecb05025af2b2f3c06b0287f9 155 Gene3D G3DSA:2.30.110.10 21 152 2.7E-42 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_38660 15a8ea2ecb05025af2b2f3c06b0287f9 155 Pfam PF04075 F420H(2)-dependent quinone reductase 31 152 1.9E-28 T 13-10-2018 IPR004378 F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 RAM_38660 15a8ea2ecb05025af2b2f3c06b0287f9 155 TIGRFAM TIGR00026 hi_GC_TIGR00026: deazaflavin-dependent oxidoreductase, nitroreductase family 39 151 3.9E-32 T 13-10-2018 IPR004378 F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 RAM_46405 89ecbfd266d3462e7efab616c2f428d0 544 ProSitePatterns PS00211 ABC transporters family signature. 469 483 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_46405 89ecbfd266d3462e7efab616c2f428d0 544 Pfam PF00005 ABC transporter 379 497 1.4E-11 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_46405 89ecbfd266d3462e7efab616c2f428d0 544 Pfam PF00664 ABC transporter transmembrane region 49 303 2.8E-25 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 RAM_46405 89ecbfd266d3462e7efab616c2f428d0 544 SUPERFAMILY SSF52540 375 537 4.11E-33 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_46405 89ecbfd266d3462e7efab616c2f428d0 544 Gene3D G3DSA:1.20.1560.10 14 336 3.4E-45 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RAM_46405 89ecbfd266d3462e7efab616c2f428d0 544 Gene3D G3DSA:3.40.50.300 370 544 1.3E-36 T 13-10-2018 RAM_46405 89ecbfd266d3462e7efab616c2f428d0 544 SUPERFAMILY SSF90123 21 339 3.79E-48 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RAM_33030 2190a3a53ea36296da064678c0743f68 195 SMART SM00421 122 179 1.4E-25 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_33030 2190a3a53ea36296da064678c0743f68 195 Gene3D G3DSA:1.10.10.10 70 189 5.5E-33 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_33030 2190a3a53ea36296da064678c0743f68 195 ProSitePatterns PS00622 LuxR-type HTH domain signature. 139 166 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_33030 2190a3a53ea36296da064678c0743f68 195 SUPERFAMILY SSF46894 117 184 1.97E-20 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_33030 2190a3a53ea36296da064678c0743f68 195 Pfam PF00196 Bacterial regulatory proteins, luxR family 124 179 3.1E-19 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_33030 2190a3a53ea36296da064678c0743f68 195 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 155 167 9.2E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_33030 2190a3a53ea36296da064678c0743f68 195 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 125 139 9.2E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_33030 2190a3a53ea36296da064678c0743f68 195 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 139 155 9.2E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_11145 626e9e9eed1f7172af4e06b4aeb10885 125 Pfam PF01521 Iron-sulphur cluster biosynthesis 21 122 6.4E-18 T 13-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 RAM_11145 626e9e9eed1f7172af4e06b4aeb10885 125 Gene3D G3DSA:2.60.300.12 20 125 3.7E-28 T 13-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 RAM_11145 626e9e9eed1f7172af4e06b4aeb10885 125 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 107 124 - T 13-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 RAM_11145 626e9e9eed1f7172af4e06b4aeb10885 125 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 21 125 1.7E-34 T 13-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 RAM_11145 626e9e9eed1f7172af4e06b4aeb10885 125 SUPERFAMILY SSF89360 21 115 7.46E-27 T 13-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 RAM_04515 3f52e46dd2c2e0b1530cc267cdd9f358 207 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 2 207 39.974 T 13-10-2018 IPR034332 Uracil phosphoribosyltransferase, bacterial-type KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 RAM_04515 3f52e46dd2c2e0b1530cc267cdd9f358 207 Gene3D G3DSA:3.40.50.2020 1 206 5.0E-70 T 13-10-2018 RAM_04515 3f52e46dd2c2e0b1530cc267cdd9f358 207 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 3 205 7.7E-74 T 13-10-2018 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 RAM_04515 3f52e46dd2c2e0b1530cc267cdd9f358 207 SUPERFAMILY SSF53271 3 205 6.29E-58 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like RAM_04515 3f52e46dd2c2e0b1530cc267cdd9f358 207 Pfam PF14681 Uracil phosphoribosyltransferase 5 206 3.3E-60 T 13-10-2018 RAM_04660 16c81c78d3584eaed5ac70474ddff000 722 TIGRFAM TIGR00641 acid_CoA_mut_N: methylmalonyl-CoA mutase N-terminal domain 39 559 2.5E-278 T 13-10-2018 IPR006098 Methylmalonyl-CoA mutase, alpha chain, catalytic GO:0004494|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 RAM_04660 16c81c78d3584eaed5ac70474ddff000 722 Gene3D G3DSA:3.40.50.280 558 720 2.1E-56 T 13-10-2018 RAM_04660 16c81c78d3584eaed5ac70474ddff000 722 Pfam PF02310 B12 binding domain 594 707 7.7E-15 T 13-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 RAM_04660 16c81c78d3584eaed5ac70474ddff000 722 ProSitePatterns PS00544 Methylmalonyl-CoA mutase signature. 382 407 - T 13-10-2018 IPR006099 Methylmalonyl-CoA mutase, alpha/beta chain, catalytic GO:0016866|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 RAM_04660 16c81c78d3584eaed5ac70474ddff000 722 SUPERFAMILY SSF51703 19 554 2.41E-220 T 13-10-2018 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 RAM_04660 16c81c78d3584eaed5ac70474ddff000 722 Pfam PF01642 Methylmalonyl-CoA mutase 40 552 9.3E-234 T 13-10-2018 IPR006099 Methylmalonyl-CoA mutase, alpha/beta chain, catalytic GO:0016866|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 RAM_04660 16c81c78d3584eaed5ac70474ddff000 722 Gene3D G3DSA:3.20.20.240 39 554 2.3E-239 T 13-10-2018 RAM_04660 16c81c78d3584eaed5ac70474ddff000 722 TIGRFAM TIGR00640 acid_CoA_mut_C: methylmalonyl-CoA mutase C-terminal domain 591 719 3.8E-62 T 13-10-2018 IPR006159 Methylmalonyl-CoA mutase, C-terminal GO:0016853 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 RAM_04660 16c81c78d3584eaed5ac70474ddff000 722 SUPERFAMILY SSF52242 557 717 2.35E-58 T 13-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 RAM_36055 151cc4bcc1f571a38fe3d0768fcb4352 269 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_36055 151cc4bcc1f571a38fe3d0768fcb4352 269 SUPERFAMILY SSF52540 2 238 1.38E-52 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_36055 151cc4bcc1f571a38fe3d0768fcb4352 269 Pfam PF00005 ABC transporter 18 168 1.4E-26 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_36055 151cc4bcc1f571a38fe3d0768fcb4352 269 SMART SM00382 27 217 7.9E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_36055 151cc4bcc1f571a38fe3d0768fcb4352 269 Gene3D G3DSA:3.40.50.300 1 241 5.5E-56 T 13-10-2018 RAM_08455 a360355bdf98efc6ff39e31b3e120387 118 SUPERFAMILY SSF55729 8 109 3.19E-16 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_08455 a360355bdf98efc6ff39e31b3e120387 118 Gene3D G3DSA:3.40.630.30 3 115 4.8E-21 T 13-10-2018 RAM_08455 a360355bdf98efc6ff39e31b3e120387 118 Pfam PF00583 Acetyltransferase (GNAT) family 17 107 1.2E-7 T 13-10-2018 IPR000182 GNAT domain RAM_30025 4ac41c471c42e5eebe7104c663475e04 294 SMART SM00382 29 214 2.9E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_30025 4ac41c471c42e5eebe7104c663475e04 294 Pfam PF00005 ABC transporter 20 156 1.7E-24 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_30025 4ac41c471c42e5eebe7104c663475e04 294 SUPERFAMILY SSF52540 3 219 1.09E-53 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_30025 4ac41c471c42e5eebe7104c663475e04 294 Gene3D G3DSA:3.40.50.300 1 225 2.5E-58 T 13-10-2018 RAM_40985 5f7981e828ed898fbd934e2fb99a3633 158 PIRSF PIRSF006181 1 158 1.8E-49 T 13-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC RAM_40985 5f7981e828ed898fbd934e2fb99a3633 158 SUPERFAMILY SSF55826 6 156 1.12E-43 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 RAM_40985 5f7981e828ed898fbd934e2fb99a3633 158 TIGRFAM TIGR00011 YbaK_EbsC: Cys-tRNA(Pro) deacylase 6 156 1.1E-51 T 13-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC RAM_40985 5f7981e828ed898fbd934e2fb99a3633 158 Pfam PF04073 Aminoacyl-tRNA editing domain 36 148 1.1E-26 T 13-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 RAM_40985 5f7981e828ed898fbd934e2fb99a3633 158 Gene3D G3DSA:3.90.960.10 2 158 3.8E-59 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 RAM_34820 cb3a10fb551340e76c1e14c3f8de6369 1546 Gene3D G3DSA:3.30.565.10 1203 1378 7.9E-51 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_34820 cb3a10fb551340e76c1e14c3f8de6369 1546 SUPERFAMILY SSF55874 1193 1377 7.86E-46 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_34820 cb3a10fb551340e76c1e14c3f8de6369 1546 SUPERFAMILY SSF52172 1411 1532 2.13E-33 T 13-10-2018 IPR011006 CheY-like superfamily RAM_34820 cb3a10fb551340e76c1e14c3f8de6369 1546 Pfam PF00072 Response regulator receiver domain 1415 1527 3.5E-22 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_34820 cb3a10fb551340e76c1e14c3f8de6369 1546 SUPERFAMILY SSF47384 1121 1205 7.06E-19 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RAM_34820 cb3a10fb551340e76c1e14c3f8de6369 1546 SUPERFAMILY SSF58104 399 713 6.54E-19 T 13-10-2018 RAM_34820 cb3a10fb551340e76c1e14c3f8de6369 1546 SMART SM00387 1251 1375 4.5E-39 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_34820 cb3a10fb551340e76c1e14c3f8de6369 1546 SMART SM00448 1413 1527 3.2E-31 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_34820 cb3a10fb551340e76c1e14c3f8de6369 1546 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1300 1314 6.6E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_34820 cb3a10fb551340e76c1e14c3f8de6369 1546 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1318 1328 6.6E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_34820 cb3a10fb551340e76c1e14c3f8de6369 1546 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1359 1372 6.6E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_34820 cb3a10fb551340e76c1e14c3f8de6369 1546 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1335 1353 6.6E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_34820 cb3a10fb551340e76c1e14c3f8de6369 1546 SMART SM00065 915 1065 3.1E-7 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_34820 cb3a10fb551340e76c1e14c3f8de6369 1546 SUPERFAMILY SSF58104 767 890 3.4E-11 T 13-10-2018 RAM_34820 cb3a10fb551340e76c1e14c3f8de6369 1546 Pfam PF00512 His Kinase A (phospho-acceptor) domain 1137 1204 3.1E-16 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_34820 cb3a10fb551340e76c1e14c3f8de6369 1546 Pfam PF00672 HAMP domain 293 335 2.4E-6 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_34820 cb3a10fb551340e76c1e14c3f8de6369 1546 Pfam PF00672 HAMP domain 661 704 1.2E-6 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_34820 cb3a10fb551340e76c1e14c3f8de6369 1546 Gene3D G3DSA:1.10.287.130 1100 1202 1.7E-23 T 13-10-2018 RAM_34820 cb3a10fb551340e76c1e14c3f8de6369 1546 Pfam PF13185 GAF domain 914 1049 1.9E-16 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_34820 cb3a10fb551340e76c1e14c3f8de6369 1546 SUPERFAMILY SSF55781 878 1049 7.85E-29 T 13-10-2018 RAM_34820 cb3a10fb551340e76c1e14c3f8de6369 1546 Gene3D G3DSA:1.10.8.500 655 714 5.8E-8 T 13-10-2018 RAM_34820 cb3a10fb551340e76c1e14c3f8de6369 1546 Gene3D G3DSA:1.10.8.500 843 903 1.5E-5 T 13-10-2018 RAM_34820 cb3a10fb551340e76c1e14c3f8de6369 1546 Gene3D G3DSA:1.10.8.500 184 256 3.4E-9 T 13-10-2018 RAM_34820 cb3a10fb551340e76c1e14c3f8de6369 1546 Gene3D G3DSA:1.10.8.500 287 344 5.3E-8 T 13-10-2018 RAM_34820 cb3a10fb551340e76c1e14c3f8de6369 1546 Gene3D G3DSA:1.10.8.500 382 437 1.5E-5 T 13-10-2018 RAM_34820 cb3a10fb551340e76c1e14c3f8de6369 1546 SUPERFAMILY SSF158472 292 335 6.93E-5 T 13-10-2018 RAM_34820 cb3a10fb551340e76c1e14c3f8de6369 1546 Gene3D G3DSA:3.30.450.40 904 1055 4.9E-18 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_34820 cb3a10fb551340e76c1e14c3f8de6369 1546 Gene3D G3DSA:2.60.120.260 743 842 4.2E-8 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_34820 cb3a10fb551340e76c1e14c3f8de6369 1546 Gene3D G3DSA:2.60.120.260 467 562 3.7E-9 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_34820 cb3a10fb551340e76c1e14c3f8de6369 1546 Gene3D G3DSA:2.60.120.260 563 653 5.0E-9 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_34820 cb3a10fb551340e76c1e14c3f8de6369 1546 SMART SM00388 1136 1204 2.6E-20 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_34820 cb3a10fb551340e76c1e14c3f8de6369 1546 SUPERFAMILY SSF58104 133 298 8.89E-9 T 13-10-2018 RAM_34820 cb3a10fb551340e76c1e14c3f8de6369 1546 SMART SM00304 655 707 2.5E-8 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_34820 cb3a10fb551340e76c1e14c3f8de6369 1546 SMART SM00304 747 799 1.3E-10 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_34820 cb3a10fb551340e76c1e14c3f8de6369 1546 SMART SM00304 471 523 1.1E-10 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_34820 cb3a10fb551340e76c1e14c3f8de6369 1546 SMART SM00304 287 339 2.0E-8 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_34820 cb3a10fb551340e76c1e14c3f8de6369 1546 SMART SM00304 839 891 1.7E-10 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_34820 cb3a10fb551340e76c1e14c3f8de6369 1546 SMART SM00304 6 58 18.0 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_34820 cb3a10fb551340e76c1e14c3f8de6369 1546 SMART SM00304 379 431 1.3E-7 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_34820 cb3a10fb551340e76c1e14c3f8de6369 1546 SMART SM00304 563 615 6.5E-10 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_34820 cb3a10fb551340e76c1e14c3f8de6369 1546 SMART SM00304 195 247 4.6E-9 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_34820 cb3a10fb551340e76c1e14c3f8de6369 1546 SMART SM00304 98 155 0.17 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_34820 cb3a10fb551340e76c1e14c3f8de6369 1546 Gene3D G3DSA:3.40.50.12740 1413 1545 3.2E-35 T 13-10-2018 RAM_34820 cb3a10fb551340e76c1e14c3f8de6369 1546 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1251 1373 5.1E-29 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_02730 8ab522ad4a9060fde27d17615b9881b1 522 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 134 511 1.7E-110 T 13-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 RAM_02730 8ab522ad4a9060fde27d17615b9881b1 522 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 18 512 17.427 T 13-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 RAM_02730 8ab522ad4a9060fde27d17615b9881b1 522 Pfam PF00361 Proton-conducting membrane transporter 164 457 3.2E-73 T 13-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_37970 c8fdf6837a11905bd460130cd03048d7 542 SMART SM00458 419 542 2.9E-23 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_37970 c8fdf6837a11905bd460130cd03048d7 542 PRINTS PR00740 Glycosyl hydrolase family 27 signature 280 301 2.8E-47 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_37970 c8fdf6837a11905bd460130cd03048d7 542 PRINTS PR00740 Glycosyl hydrolase family 27 signature 259 278 2.8E-47 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_37970 c8fdf6837a11905bd460130cd03048d7 542 PRINTS PR00740 Glycosyl hydrolase family 27 signature 153 170 2.8E-47 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_37970 c8fdf6837a11905bd460130cd03048d7 542 PRINTS PR00740 Glycosyl hydrolase family 27 signature 35 54 2.8E-47 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_37970 c8fdf6837a11905bd460130cd03048d7 542 PRINTS PR00740 Glycosyl hydrolase family 27 signature 182 200 2.8E-47 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_37970 c8fdf6837a11905bd460130cd03048d7 542 PRINTS PR00740 Glycosyl hydrolase family 27 signature 71 86 2.8E-47 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_37970 c8fdf6837a11905bd460130cd03048d7 542 Gene3D G3DSA:3.20.20.70 38 327 2.6E-111 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_37970 c8fdf6837a11905bd460130cd03048d7 542 Gene3D G3DSA:2.60.40.1180 328 413 6.2E-23 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta RAM_37970 c8fdf6837a11905bd460130cd03048d7 542 Gene3D G3DSA:2.80.10.50 416 541 2.6E-38 T 13-10-2018 RAM_37970 c8fdf6837a11905bd460130cd03048d7 542 Pfam PF16499 Alpha galactosidase A 40 324 8.2E-75 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_37970 c8fdf6837a11905bd460130cd03048d7 542 SUPERFAMILY SSF51011 319 411 1.32E-17 T 13-10-2018 RAM_37970 c8fdf6837a11905bd460130cd03048d7 542 SUPERFAMILY SSF50370 417 540 1.86E-37 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_37970 c8fdf6837a11905bd460130cd03048d7 542 ProSitePatterns PS00512 Alpha-galactosidase signature. 76 92 - T 13-10-2018 IPR000111 Glycoside hydrolase family 27/36, conserved site GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_37970 c8fdf6837a11905bd460130cd03048d7 542 SUPERFAMILY SSF51445 32 324 2.11E-82 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_37970 c8fdf6837a11905bd460130cd03048d7 542 Pfam PF00652 Ricin-type beta-trefoil lectin domain 421 539 9.0E-27 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_03795 2d2574a4ed7184a7733195327c0c6eab 320 SUPERFAMILY SSF56601 63 273 1.27E-23 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_03795 2d2574a4ed7184a7733195327c0c6eab 320 Pfam PF13354 Beta-lactamase enzyme family 61 263 1.2E-36 T 13-10-2018 RAM_03795 2d2574a4ed7184a7733195327c0c6eab 320 Gene3D G3DSA:3.40.710.10 24 289 2.5E-35 T 13-10-2018 RAM_16010 9ba53ad1eb33efe735b9836e7c2f417d 401 SMART SM00220 13 259 7.6E-50 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_16010 9ba53ad1eb33efe735b9836e7c2f417d 401 Gene3D G3DSA:1.10.510.10 93 273 1.6E-39 T 13-10-2018 RAM_16010 9ba53ad1eb33efe735b9836e7c2f417d 401 SUPERFAMILY SSF56112 9 332 8.09E-66 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_16010 9ba53ad1eb33efe735b9836e7c2f417d 401 Gene3D G3DSA:3.30.200.20 2 92 6.4E-21 T 13-10-2018 RAM_16010 9ba53ad1eb33efe735b9836e7c2f417d 401 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 19 42 - T 13-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 RAM_16010 9ba53ad1eb33efe735b9836e7c2f417d 401 Pfam PF00069 Protein kinase domain 13 219 9.4E-42 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_16010 9ba53ad1eb33efe735b9836e7c2f417d 401 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 129 141 - T 13-10-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 RAM_21190 df7de99f2edfc6ce4b1c6cc715ef03b0 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 5.5E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_21190 df7de99f2edfc6ce4b1c6cc715ef03b0 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 5.5E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_21190 df7de99f2edfc6ce4b1c6cc715ef03b0 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 5.5E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_21190 df7de99f2edfc6ce4b1c6cc715ef03b0 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 2.9E-22 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_21190 df7de99f2edfc6ce4b1c6cc715ef03b0 300 Pfam PF03466 LysR substrate binding domain 101 280 5.7E-22 T 13-10-2018 IPR005119 LysR, substrate-binding RAM_21190 df7de99f2edfc6ce4b1c6cc715ef03b0 300 SUPERFAMILY SSF46785 4 86 1.16E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_21190 df7de99f2edfc6ce4b1c6cc715ef03b0 300 Gene3D G3DSA:3.40.190.10 161 262 1.6E-25 T 13-10-2018 RAM_21190 df7de99f2edfc6ce4b1c6cc715ef03b0 300 Gene3D G3DSA:3.40.190.10 103 279 1.6E-25 T 13-10-2018 RAM_21190 df7de99f2edfc6ce4b1c6cc715ef03b0 300 Gene3D G3DSA:1.10.10.10 1 88 8.1E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_21190 df7de99f2edfc6ce4b1c6cc715ef03b0 300 SUPERFAMILY SSF53850 100 281 1.17E-21 T 13-10-2018 RAM_09600 7182b9e1bd5ce33be07ca6989367fd95 33 Pfam PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) 10 33 2.1E-11 T 13-10-2018 IPR011726 K+ transporting P-type ATPase, F subunit GO:0005886|GO:0008556|GO:0043462 RAM_09600 7182b9e1bd5ce33be07ca6989367fd95 33 TIGRFAM TIGR02115 potass_kdpF: K+-transporting ATPase, F subunit 11 33 2.8E-11 T 13-10-2018 IPR011726 K+ transporting P-type ATPase, F subunit GO:0005886|GO:0008556|GO:0043462 RAM_34485 e866dd8fc04b728f7971ecbf602907bb 295 SUPERFAMILY SSF53850 88 294 2.48E-26 T 13-10-2018 RAM_34485 e866dd8fc04b728f7971ecbf602907bb 295 Gene3D G3DSA:1.10.10.10 1 84 4.3E-32 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_34485 e866dd8fc04b728f7971ecbf602907bb 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.4E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_34485 e866dd8fc04b728f7971ecbf602907bb 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.4E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_34485 e866dd8fc04b728f7971ecbf602907bb 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.4E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_34485 e866dd8fc04b728f7971ecbf602907bb 295 Pfam PF03466 LysR substrate binding domain 91 293 6.4E-25 T 13-10-2018 IPR005119 LysR, substrate-binding RAM_34485 e866dd8fc04b728f7971ecbf602907bb 295 SUPERFAMILY SSF46785 2 86 1.01E-26 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_34485 e866dd8fc04b728f7971ecbf602907bb 295 Gene3D G3DSA:3.40.190.10 160 267 6.6E-30 T 13-10-2018 RAM_34485 e866dd8fc04b728f7971ecbf602907bb 295 Gene3D G3DSA:3.40.190.10 102 276 6.6E-30 T 13-10-2018 RAM_34485 e866dd8fc04b728f7971ecbf602907bb 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 5.3E-24 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_12820 033d5ec8570987fb3024b9c422cd2166 387 SUPERFAMILY SSF56645 10 201 1.57E-34 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_12820 033d5ec8570987fb3024b9c422cd2166 387 Gene3D G3DSA:1.10.540.10 1 107 7.5E-32 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_12820 033d5ec8570987fb3024b9c422cd2166 387 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 16 81 6.0E-5 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_12820 033d5ec8570987fb3024b9c422cd2166 387 Gene3D G3DSA:1.20.140.10 203 387 1.4E-51 T 13-10-2018 RAM_12820 033d5ec8570987fb3024b9c422cd2166 387 SUPERFAMILY SSF47203 221 365 2.74E-17 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_12820 033d5ec8570987fb3024b9c422cd2166 387 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 233 365 6.8E-39 T 13-10-2018 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain RAM_12820 033d5ec8570987fb3024b9c422cd2166 387 Gene3D G3DSA:2.40.110.10 108 202 9.6E-35 T 13-10-2018 RAM_12820 033d5ec8570987fb3024b9c422cd2166 387 PIRSF PIRSF016578 1 387 2.7E-137 T 13-10-2018 RAM_23465 d5db2af77564d45513f439f685125ea2 278 Pfam PF00106 short chain dehydrogenase 8 186 7.0E-42 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_23465 d5db2af77564d45513f439f685125ea2 278 Gene3D G3DSA:3.40.50.720 3 275 1.1E-62 T 13-10-2018 RAM_23465 d5db2af77564d45513f439f685125ea2 278 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 2.5E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_23465 d5db2af77564d45513f439f685125ea2 278 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 2.5E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_23465 d5db2af77564d45513f439f685125ea2 278 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 2.5E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_23465 d5db2af77564d45513f439f685125ea2 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 8.6E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_23465 d5db2af77564d45513f439f685125ea2 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 8.6E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_23465 d5db2af77564d45513f439f685125ea2 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 8.6E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_23465 d5db2af77564d45513f439f685125ea2 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 198 218 8.6E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_23465 d5db2af77564d45513f439f685125ea2 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 8.6E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_23465 d5db2af77564d45513f439f685125ea2 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 8.6E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_23465 d5db2af77564d45513f439f685125ea2 278 SUPERFAMILY SSF51735 1 237 3.4E-56 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_23465 d5db2af77564d45513f439f685125ea2 278 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 188 0.0072 T 13-10-2018 RAM_40895 0872720c40209c18bfa33c5477d884e4 234 Gene3D G3DSA:1.10.3720.10 28 219 2.2E-25 T 13-10-2018 IPR035906 MetI-like superfamily RAM_40895 0872720c40209c18bfa33c5477d884e4 234 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 50 221 8.0E-22 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_40895 0872720c40209c18bfa33c5477d884e4 234 SUPERFAMILY SSF161098 26 210 9.55E-33 T 13-10-2018 IPR035906 MetI-like superfamily RAM_15060 05b28b8ce42817050d3ba16f2f25acac 248 SUPERFAMILY SSF46785 6 87 3.46E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_15060 05b28b8ce42817050d3ba16f2f25acac 248 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 59 74 2.0E-9 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_15060 05b28b8ce42817050d3ba16f2f25acac 248 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 11 26 2.0E-9 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_15060 05b28b8ce42817050d3ba16f2f25acac 248 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 44 59 2.0E-9 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_15060 05b28b8ce42817050d3ba16f2f25acac 248 Gene3D G3DSA:1.10.10.10 4 93 1.7E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_15060 05b28b8ce42817050d3ba16f2f25acac 248 Pfam PF12840 Helix-turn-helix domain 10 68 4.8E-11 T 13-10-2018 RAM_15060 05b28b8ce42817050d3ba16f2f25acac 248 SMART SM00418 12 88 1.4E-19 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_22165 ad96ed56c0ec096d1102a16f6ed80161 696 SMART SM00052 461 689 1.2E-9 T 13-10-2018 IPR001633 EAL domain RAM_22165 ad96ed56c0ec096d1102a16f6ed80161 696 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 164 285 3.0E-10 T 13-10-2018 IPR000014 PAS domain RAM_22165 ad96ed56c0ec096d1102a16f6ed80161 696 Gene3D G3DSA:3.30.450.20 150 276 2.4E-15 T 13-10-2018 RAM_22165 ad96ed56c0ec096d1102a16f6ed80161 696 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 286 447 1.8E-27 T 13-10-2018 IPR000160 GGDEF domain RAM_22165 ad96ed56c0ec096d1102a16f6ed80161 696 SUPERFAMILY SSF55785 155 274 8.53E-17 T 13-10-2018 IPR035965 PAS domain superfamily RAM_22165 ad96ed56c0ec096d1102a16f6ed80161 696 Pfam PF00563 EAL domain 472 689 1.0E-25 T 13-10-2018 IPR001633 EAL domain RAM_22165 ad96ed56c0ec096d1102a16f6ed80161 696 SMART SM00091 164 230 3.4E-11 T 13-10-2018 IPR000014 PAS domain RAM_22165 ad96ed56c0ec096d1102a16f6ed80161 696 Gene3D G3DSA:3.30.70.270 277 452 4.9E-38 T 13-10-2018 RAM_22165 ad96ed56c0ec096d1102a16f6ed80161 696 Gene3D G3DSA:3.20.20.450 464 692 6.6E-33 T 13-10-2018 IPR035919 EAL domain superfamily RAM_22165 ad96ed56c0ec096d1102a16f6ed80161 696 Pfam PF00990 Diguanylate cyclase, GGDEF domain 290 446 1.3E-30 T 13-10-2018 IPR000160 GGDEF domain RAM_22165 ad96ed56c0ec096d1102a16f6ed80161 696 SMART SM00267 279 451 3.7E-38 T 13-10-2018 IPR000160 GGDEF domain RAM_22165 ad96ed56c0ec096d1102a16f6ed80161 696 SUPERFAMILY SSF55073 295 447 1.1E-29 T 13-10-2018 IPR029787 Nucleotide cyclase RAM_22165 ad96ed56c0ec096d1102a16f6ed80161 696 SUPERFAMILY SSF141868 470 689 8.76E-27 T 13-10-2018 IPR035919 EAL domain superfamily RAM_22165 ad96ed56c0ec096d1102a16f6ed80161 696 Pfam PF00989 PAS fold 165 273 6.2E-9 T 13-10-2018 IPR013767 PAS fold GO:0006355 RAM_00820 4e7d3e599e4e65783f2034c6ea550643 319 Pfam PF11918 N-terminal domain of Peptidase_S41 in eukaryotic IRBP 9 81 1.9E-9 T 13-10-2018 RAM_00820 4e7d3e599e4e65783f2034c6ea550643 319 SMART SM00245 82 280 2.7E-19 T 13-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 RAM_00820 4e7d3e599e4e65783f2034c6ea550643 319 Gene3D G3DSA:3.90.226.10 78 288 1.8E-76 T 13-10-2018 RAM_00820 4e7d3e599e4e65783f2034c6ea550643 319 SUPERFAMILY SSF52096 14 295 5.3E-45 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_00820 4e7d3e599e4e65783f2034c6ea550643 319 Pfam PF03572 Peptidase family S41 130 279 1.0E-17 T 13-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 RAM_00820 4e7d3e599e4e65783f2034c6ea550643 319 Gene3D G3DSA:3.30.750.44 16 255 1.8E-76 T 13-10-2018 RAM_45800 70cf23c8fec8d8bf6edbc84509c4d20b 606 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 54 212 4.6E-29 T 13-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like RAM_48025 510f0818e77ff93c1562754789944cb8 47 Pfam PF00468 Ribosomal protein L34 5 47 3.0E-19 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_48025 510f0818e77ff93c1562754789944cb8 47 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 4 47 15.315 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_48025 510f0818e77ff93c1562754789944cb8 47 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 5 25 3.0E-5 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_48025 510f0818e77ff93c1562754789944cb8 47 ProSitePatterns PS00784 Ribosomal protein L34 signature. 5 24 - T 13-10-2018 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_48025 510f0818e77ff93c1562754789944cb8 47 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 5 47 3.6E-18 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_27450 ce3c2bdeae53586adcb1253ed70e0803 242 Gene3D G3DSA:1.10.10.10 12 77 1.7E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_27450 ce3c2bdeae53586adcb1253ed70e0803 242 SUPERFAMILY SSF46785 11 80 3.5E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_27450 ce3c2bdeae53586adcb1253ed70e0803 242 SUPERFAMILY SSF48008 84 226 4.97E-8 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_27450 ce3c2bdeae53586adcb1253ed70e0803 242 Pfam PF07729 FCD domain 86 221 3.4E-9 T 13-10-2018 IPR011711 GntR, C-terminal RAM_27450 ce3c2bdeae53586adcb1253ed70e0803 242 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 70 4.4E-17 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_27450 ce3c2bdeae53586adcb1253ed70e0803 242 Gene3D G3DSA:1.20.120.530 81 233 1.9E-14 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_27450 ce3c2bdeae53586adcb1253ed70e0803 242 SMART SM00345 18 76 1.7E-11 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_27450 ce3c2bdeae53586adcb1253ed70e0803 242 SMART SM00895 86 227 0.0028 T 13-10-2018 IPR011711 GntR, C-terminal RAM_27335 94a27009f739232ac1e32a59271ff884 539 SMART SM00710 346 367 910.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_27335 94a27009f739232ac1e32a59271ff884 539 SMART SM00710 265 291 29.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_27335 94a27009f739232ac1e32a59271ff884 539 SMART SM00710 370 392 3000.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_27335 94a27009f739232ac1e32a59271ff884 539 SMART SM00710 395 416 930.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_27335 94a27009f739232ac1e32a59271ff884 539 SMART SM00710 157 187 6400.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_27335 94a27009f739232ac1e32a59271ff884 539 SMART SM00710 292 314 1300.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_27335 94a27009f739232ac1e32a59271ff884 539 SMART SM00710 315 344 1300.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_27335 94a27009f739232ac1e32a59271ff884 539 SMART SM00710 216 238 48.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_27335 94a27009f739232ac1e32a59271ff884 539 Pfam PF13229 Right handed beta helix region 219 364 5.1E-9 T 13-10-2018 IPR039448 Right handed beta helix domain RAM_27335 94a27009f739232ac1e32a59271ff884 539 Gene3D G3DSA:2.160.20.10 21 284 6.1E-23 T 13-10-2018 IPR012334 Pectin lyase fold RAM_27335 94a27009f739232ac1e32a59271ff884 539 SUPERFAMILY SSF51126 266 538 6.14E-22 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor RAM_27335 94a27009f739232ac1e32a59271ff884 539 SUPERFAMILY SSF51126 14 278 1.75E-16 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor RAM_20710 4477282789b662afbe8d85708ea33123 88 SUPERFAMILY SSF47336 8 84 4.19E-13 T 13-10-2018 IPR036736 ACP-like superfamily RAM_20710 4477282789b662afbe8d85708ea33123 88 Gene3D G3DSA:1.10.1200.10 2 85 3.3E-16 T 13-10-2018 IPR036736 ACP-like superfamily RAM_20710 4477282789b662afbe8d85708ea33123 88 Pfam PF00550 Phosphopantetheine attachment site 27 71 1.2E-9 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_45445 7827b7cd0440c901cf26c7e2a65b1271 616 Gene3D G3DSA:2.120.10.30 18 133 2.1E-5 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RAM_45445 7827b7cd0440c901cf26c7e2a65b1271 616 SUPERFAMILY SSF53474 371 609 1.2E-52 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_45445 7827b7cd0440c901cf26c7e2a65b1271 616 Gene3D G3DSA:2.120.10.30 138 357 3.1E-9 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RAM_45445 7827b7cd0440c901cf26c7e2a65b1271 616 Pfam PF00326 Prolyl oligopeptidase family 407 614 4.8E-42 T 13-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 RAM_45445 7827b7cd0440c901cf26c7e2a65b1271 616 SUPERFAMILY SSF69304 43 323 1.23E-17 T 13-10-2018 RAM_45445 7827b7cd0440c901cf26c7e2a65b1271 616 Gene3D G3DSA:3.40.50.1820 360 615 1.9E-62 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_14115 40718075bc0af19db8e1ef8024892aed 240 Pfam PF00089 Trypsin 33 234 8.3E-24 T 13-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 RAM_14115 40718075bc0af19db8e1ef8024892aed 240 SUPERFAMILY SSF50494 19 238 1.34E-35 T 13-10-2018 IPR009003 Peptidase S1, PA clan RAM_14115 40718075bc0af19db8e1ef8024892aed 240 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 186 198 3.4E-9 T 13-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 RAM_14115 40718075bc0af19db8e1ef8024892aed 240 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 109 123 3.4E-9 T 13-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 RAM_14115 40718075bc0af19db8e1ef8024892aed 240 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 63 78 3.4E-9 T 13-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 RAM_14115 40718075bc0af19db8e1ef8024892aed 240 Gene3D G3DSA:2.40.10.10 33 109 8.6E-11 T 13-10-2018 RAM_14115 40718075bc0af19db8e1ef8024892aed 240 SMART SM00020 32 234 2.0E-10 T 13-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 RAM_14115 40718075bc0af19db8e1ef8024892aed 240 Gene3D G3DSA:2.40.10.10 110 238 4.0E-14 T 13-10-2018 RAM_40610 fac4afab3e79911a26f6cafe78033ee6 431 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 192 282 4.1E-10 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RAM_40610 fac4afab3e79911a26f6cafe78033ee6 431 Gene3D G3DSA:1.10.540.10 65 187 2.7E-24 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_40610 fac4afab3e79911a26f6cafe78033ee6 431 Gene3D G3DSA:2.40.110.10 191 296 1.6E-15 T 13-10-2018 RAM_40610 fac4afab3e79911a26f6cafe78033ee6 431 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 74 184 9.7E-21 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_40610 fac4afab3e79911a26f6cafe78033ee6 431 SUPERFAMILY SSF56645 69 291 9.82E-40 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_40610 fac4afab3e79911a26f6cafe78033ee6 431 Gene3D G3DSA:1.20.140.10 297 431 3.3E-34 T 13-10-2018 RAM_40610 fac4afab3e79911a26f6cafe78033ee6 431 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 399 418 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RAM_40610 fac4afab3e79911a26f6cafe78033ee6 431 SUPERFAMILY SSF47203 300 428 1.93E-34 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_40610 fac4afab3e79911a26f6cafe78033ee6 431 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 300 428 8.7E-27 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_39800 546ac9f152724479b9152d8d8acc05b0 209 Pfam PF02734 DAK2 domain 32 205 8.5E-54 T 13-10-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 RAM_39800 546ac9f152724479b9152d8d8acc05b0 209 SMART SM01120 32 206 3.8E-73 T 13-10-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 RAM_39800 546ac9f152724479b9152d8d8acc05b0 209 SUPERFAMILY SSF101473 4 207 6.15E-52 T 13-10-2018 IPR036117 DhaL domain superfamily GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 RAM_39800 546ac9f152724479b9152d8d8acc05b0 209 TIGRFAM TIGR02365 dha_L_ycgS: dihydroxyacetone kinase, L subunit 11 205 4.1E-68 T 13-10-2018 IPR012737 Dihydroxyacetone kinase, subunit L GO:0016772 KEGG: 00561+2.7.1.121 RAM_39800 546ac9f152724479b9152d8d8acc05b0 209 Gene3D G3DSA:1.25.40.340 2 209 5.2E-60 T 13-10-2018 IPR036117 DhaL domain superfamily GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 RAM_44440 7481b6db3ca0ddf7779b64db192e0051 936 Pfam PF00754 F5/8 type C domain 442 563 4.8E-11 T 13-10-2018 IPR000421 Coagulation factor 5/8 C-terminal domain RAM_44440 7481b6db3ca0ddf7779b64db192e0051 936 Gene3D G3DSA:2.60.120.260 429 583 3.6E-24 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_44440 7481b6db3ca0ddf7779b64db192e0051 936 Pfam PF16990 Carbohydrate binding module (family 35) 850 923 6.4E-8 T 13-10-2018 IPR005084 Carbohydrate binding module family 6 GO:0030246 RAM_44440 7481b6db3ca0ddf7779b64db192e0051 936 Gene3D G3DSA:2.60.120.260 591 698 2.2E-9 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_44440 7481b6db3ca0ddf7779b64db192e0051 936 Gene3D G3DSA:2.60.120.260 815 936 7.4E-27 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_44440 7481b6db3ca0ddf7779b64db192e0051 936 SUPERFAMILY SSF51445 28 329 1.05E-19 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_44440 7481b6db3ca0ddf7779b64db192e0051 936 Pfam PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase 720 783 3.3E-6 T 13-10-2018 IPR018905 Alpha-galactosidase, NEW3 domain RAM_44440 7481b6db3ca0ddf7779b64db192e0051 936 SUPERFAMILY SSF49785 817 935 4.25E-12 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_44440 7481b6db3ca0ddf7779b64db192e0051 936 Pfam PF01120 Alpha-L-fucosidase 29 236 6.6E-12 T 13-10-2018 IPR000933 Glycoside hydrolase, family 29 GO:0004560|GO:0005975 KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 RAM_44440 7481b6db3ca0ddf7779b64db192e0051 936 SMART SM00812 19 384 3.0E-5 T 13-10-2018 IPR000933 Glycoside hydrolase, family 29 GO:0004560|GO:0005975 KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 RAM_44440 7481b6db3ca0ddf7779b64db192e0051 936 SUPERFAMILY SSF49785 432 564 3.9E-17 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_44440 7481b6db3ca0ddf7779b64db192e0051 936 Gene3D G3DSA:3.20.20.80 20 336 6.9E-21 T 13-10-2018 RAM_18405 dae7a3d5cce550b27c77ff4f937278ad 242 Gene3D G3DSA:3.30.1380.10 115 242 8.0E-41 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 RAM_18405 dae7a3d5cce550b27c77ff4f937278ad 242 Pfam PF01471 Putative peptidoglycan binding domain 43 103 1.7E-11 T 13-10-2018 IPR002477 Peptidoglycan binding-like RAM_18405 dae7a3d5cce550b27c77ff4f937278ad 242 Pfam PF08291 Peptidase M15 115 225 1.8E-25 T 13-10-2018 IPR013230 Peptidase M15A, C-terminal KEGG: 00550+3.4.17.14|MetaCyc: PWY-6470 RAM_18405 dae7a3d5cce550b27c77ff4f937278ad 242 SUPERFAMILY SSF47090 30 105 7.14E-16 T 13-10-2018 IPR036365 PGBD-like superfamily RAM_18405 dae7a3d5cce550b27c77ff4f937278ad 242 SUPERFAMILY SSF55166 114 233 1.06E-25 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 RAM_18405 dae7a3d5cce550b27c77ff4f937278ad 242 Gene3D G3DSA:1.10.101.10 29 114 4.8E-23 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 RAM_04855 43dd4ff265026c0c8fb4275589969b0a 190 Gene3D G3DSA:1.10.357.10 2 189 1.9E-29 T 13-10-2018 RAM_04855 43dd4ff265026c0c8fb4275589969b0a 190 SUPERFAMILY SSF48498 78 173 6.88E-9 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_04855 43dd4ff265026c0c8fb4275589969b0a 190 Pfam PF00440 Bacterial regulatory proteins, tetR family 7 53 2.8E-14 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_04855 43dd4ff265026c0c8fb4275589969b0a 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 7 20 6.8E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_04855 43dd4ff265026c0c8fb4275589969b0a 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 51 6.8E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_04855 43dd4ff265026c0c8fb4275589969b0a 190 SUPERFAMILY SSF46689 4 72 4.72E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_47855 3d093705be1dc311837e050b10bbe416 172 Gene3D G3DSA:3.40.1740.10 1 163 1.0E-55 T 13-10-2018 RAM_47855 3d093705be1dc311837e050b10bbe416 172 Pfam PF02622 Uncharacterized ACR, COG1678 1 156 2.9E-38 T 13-10-2018 IPR003774 Protein of unknown function UPF0301 RAM_47855 3d093705be1dc311837e050b10bbe416 172 SUPERFAMILY SSF143456 1 167 1.31E-43 T 13-10-2018 RAM_35505 796640e891ec3d0f982ecb2fe2792873 525 Gene3D G3DSA:3.20.20.80 7 461 2.6E-143 T 13-10-2018 RAM_35505 796640e891ec3d0f982ecb2fe2792873 525 SMART SM00642 15 403 1.8E-124 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RAM_35505 796640e891ec3d0f982ecb2fe2792873 525 Gene3D G3DSA:3.90.400.10 107 179 2.6E-143 T 13-10-2018 RAM_35505 796640e891ec3d0f982ecb2fe2792873 525 SUPERFAMILY SSF51445 7 464 1.61E-123 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_35505 796640e891ec3d0f982ecb2fe2792873 525 Pfam PF00128 Alpha amylase, catalytic domain 30 378 2.5E-77 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RAM_29270 de8c9d2750f791c1c5b4930194b20f6e 233 Pfam PF01638 HxlR-like helix-turn-helix 16 101 1.5E-20 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type RAM_29270 de8c9d2750f791c1c5b4930194b20f6e 233 SMART SM00418 12 90 0.0066 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_29270 de8c9d2750f791c1c5b4930194b20f6e 233 SUPERFAMILY SSF46785 3 105 4.85E-27 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_29270 de8c9d2750f791c1c5b4930194b20f6e 233 Gene3D G3DSA:1.10.10.10 2 119 6.9E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_14970 c3a05848473c57d60e0712e64df0f026 224 SUPERFAMILY SSF46689 7 81 1.15E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_14970 c3a05848473c57d60e0712e64df0f026 224 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 40 63 2.2E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_14970 c3a05848473c57d60e0712e64df0f026 224 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 19 32 2.2E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_14970 c3a05848473c57d60e0712e64df0f026 224 Gene3D G3DSA:1.10.357.10 57 208 1.7E-10 T 13-10-2018 RAM_14970 c3a05848473c57d60e0712e64df0f026 224 ProSitePatterns PS01081 TetR-type HTH domain signature. 31 62 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RAM_14970 c3a05848473c57d60e0712e64df0f026 224 Gene3D G3DSA:1.10.10.60 6 56 1.2E-20 T 13-10-2018 RAM_14970 c3a05848473c57d60e0712e64df0f026 224 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 64 6.6E-14 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_01570 670b105859857aa08ba1b9a297ca4544 317 Gene3D G3DSA:1.10.3660.10 167 266 1.9E-85 T 13-10-2018 RAM_01570 670b105859857aa08ba1b9a297ca4544 317 SUPERFAMILY SSF48179 167 252 5.1E-21 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RAM_01570 670b105859857aa08ba1b9a297ca4544 317 SUPERFAMILY SSF51735 1 162 1.19E-29 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_01570 670b105859857aa08ba1b9a297ca4544 317 Gene3D G3DSA:3.40.50.720 1 166 1.9E-85 T 13-10-2018 RAM_01570 670b105859857aa08ba1b9a297ca4544 317 Pfam PF02153 Prephenate dehydrogenase 27 240 2.1E-47 T 13-10-2018 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 RAM_39470 5be016715b780f269b8b099aaed04a63 619 SUPERFAMILY SSF56801 13 610 3.92E-113 T 13-10-2018 RAM_39470 5be016715b780f269b8b099aaed04a63 619 ProSitePatterns PS00455 Putative AMP-binding domain signature. 193 204 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_39470 5be016715b780f269b8b099aaed04a63 619 Gene3D G3DSA:3.40.50.12780 3 343 5.2E-46 T 13-10-2018 RAM_39470 5be016715b780f269b8b099aaed04a63 619 Pfam PF00501 AMP-binding enzyme 20 478 1.4E-83 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_39470 5be016715b780f269b8b099aaed04a63 619 Gene3D G3DSA:3.40.50.12780 344 471 1.5E-33 T 13-10-2018 RAM_39470 5be016715b780f269b8b099aaed04a63 619 Gene3D G3DSA:3.30.300.30 476 614 2.9E-7 T 13-10-2018 RAM_18080 8961c8aa1eee7b562befae2ae86f121a 172 Gene3D G3DSA:1.10.357.10 1 168 2.4E-16 T 13-10-2018 RAM_18080 8961c8aa1eee7b562befae2ae86f121a 172 Pfam PF00440 Bacterial regulatory proteins, tetR family 7 46 1.8E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_18080 8961c8aa1eee7b562befae2ae86f121a 172 SUPERFAMILY SSF46689 2 58 8.51E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_00990 3c81350147fa49c3630d60aeeafd41b9 395 Pfam PF01266 FAD dependent oxidoreductase 4 390 4.1E-66 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RAM_00990 3c81350147fa49c3630d60aeeafd41b9 395 SUPERFAMILY SSF51905 4 282 1.38E-50 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_06885 257fe8631e6f0d8034b70c7dbeea42e6 280 Pfam PF12730 ABC-2 family transporter protein 2 139 1.1E-14 T 13-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 RAM_14855 4e716b4b97856a30b87326faff773d0e 1184 Gene3D G3DSA:1.25.40.10 453 750 1.9E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_14855 4e716b4b97856a30b87326faff773d0e 1184 SUPERFAMILY SSF48452 333 433 5.48E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_14855 4e716b4b97856a30b87326faff773d0e 1184 Gene3D G3DSA:1.25.40.10 193 374 1.9E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_14855 4e716b4b97856a30b87326faff773d0e 1184 Pfam PF12770 CHAT domain 914 1183 5.7E-46 T 13-10-2018 IPR024983 CHAT domain RAM_19265 3b25c0b88a118d7a2fde20cafbb10adc 718 Gene3D G3DSA:3.30.110.120 244 358 5.5E-140 T 13-10-2018 RAM_19265 3b25c0b88a118d7a2fde20cafbb10adc 718 Pfam PF00708 Acylphosphatase 4 86 2.4E-19 T 13-10-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 RAM_19265 3b25c0b88a118d7a2fde20cafbb10adc 718 Gene3D G3DSA:3.30.420.360 370 711 6.1E-130 T 13-10-2018 RAM_19265 3b25c0b88a118d7a2fde20cafbb10adc 718 Pfam PF01300 Telomere recombination 200 370 7.5E-50 T 13-10-2018 IPR006070 YrdC-like domain GO:0003725 RAM_19265 3b25c0b88a118d7a2fde20cafbb10adc 718 Gene3D G3DSA:3.30.420.350 470 699 6.1E-130 T 13-10-2018 RAM_19265 3b25c0b88a118d7a2fde20cafbb10adc 718 SUPERFAMILY SSF54975 2 87 1.66E-21 T 13-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 RAM_19265 3b25c0b88a118d7a2fde20cafbb10adc 718 Pfam PF07503 HypF finger 105 138 7.3E-18 T 13-10-2018 IPR011125 Zinc finger, HypF-type GO:0008270 RAM_19265 3b25c0b88a118d7a2fde20cafbb10adc 718 Pfam PF07503 HypF finger 155 187 9.1E-16 T 13-10-2018 IPR011125 Zinc finger, HypF-type GO:0008270 RAM_19265 3b25c0b88a118d7a2fde20cafbb10adc 718 PIRSF PIRSF006256 1 718 9.0E-278 T 13-10-2018 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 RAM_19265 3b25c0b88a118d7a2fde20cafbb10adc 718 TIGRFAM TIGR00143 hypF: carbamoyltransferase HypF 5 712 2.5E-234 T 13-10-2018 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 RAM_19265 3b25c0b88a118d7a2fde20cafbb10adc 718 Gene3D G3DSA:3.90.870.50 5 349 5.5E-140 T 13-10-2018 RAM_19265 3b25c0b88a118d7a2fde20cafbb10adc 718 ProSitePatterns PS00150 Acylphosphatase signature 1. 7 17 - T 13-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 RAM_19265 3b25c0b88a118d7a2fde20cafbb10adc 718 SUPERFAMILY SSF55821 173 381 2.04E-49 T 13-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily RAM_06585 d9c0f09c89c123f3775c3c1f43fd020d 683 Gene3D G3DSA:3.30.230.10 266 439 6.4E-44 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RAM_06585 d9c0f09c89c123f3775c3c1f43fd020d 683 PRINTS PR01159 DNA gyrase subunit B signature 199 214 1.9E-27 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAM_06585 d9c0f09c89c123f3775c3c1f43fd020d 683 PRINTS PR01159 DNA gyrase subunit B signature 351 367 1.9E-27 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAM_06585 d9c0f09c89c123f3775c3c1f43fd020d 683 PRINTS PR01159 DNA gyrase subunit B signature 650 666 1.9E-27 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAM_06585 d9c0f09c89c123f3775c3c1f43fd020d 683 PRINTS PR01159 DNA gyrase subunit B signature 7 17 1.9E-27 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAM_06585 d9c0f09c89c123f3775c3c1f43fd020d 683 PRINTS PR01159 DNA gyrase subunit B signature 511 520 1.9E-27 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAM_06585 d9c0f09c89c123f3775c3c1f43fd020d 683 PRINTS PR01159 DNA gyrase subunit B signature 634 646 1.9E-27 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAM_06585 d9c0f09c89c123f3775c3c1f43fd020d 683 PRINTS PR01159 DNA gyrase subunit B signature 280 298 1.9E-27 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAM_06585 d9c0f09c89c123f3775c3c1f43fd020d 683 PRINTS PR01159 DNA gyrase subunit B signature 415 435 1.9E-27 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAM_06585 d9c0f09c89c123f3775c3c1f43fd020d 683 Gene3D G3DSA:3.40.50.670 440 683 5.5E-84 T 13-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RAM_06585 d9c0f09c89c123f3775c3c1f43fd020d 683 SUPERFAMILY SSF56719 435 671 2.22E-73 T 13-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 RAM_06585 d9c0f09c89c123f3775c3c1f43fd020d 683 PRINTS PR00418 DNA topoisomerase II family signature 306 319 1.2E-57 T 13-10-2018 RAM_06585 d9c0f09c89c123f3775c3c1f43fd020d 683 PRINTS PR00418 DNA topoisomerase II family signature 461 475 1.2E-57 T 13-10-2018 RAM_06585 d9c0f09c89c123f3775c3c1f43fd020d 683 PRINTS PR00418 DNA topoisomerase II family signature 565 577 1.2E-57 T 13-10-2018 RAM_06585 d9c0f09c89c123f3775c3c1f43fd020d 683 PRINTS PR00418 DNA topoisomerase II family signature 71 84 1.2E-57 T 13-10-2018 RAM_06585 d9c0f09c89c123f3775c3c1f43fd020d 683 PRINTS PR00418 DNA topoisomerase II family signature 36 51 1.2E-57 T 13-10-2018 RAM_06585 d9c0f09c89c123f3775c3c1f43fd020d 683 PRINTS PR00418 DNA topoisomerase II family signature 545 562 1.2E-57 T 13-10-2018 RAM_06585 d9c0f09c89c123f3775c3c1f43fd020d 683 PRINTS PR00418 DNA topoisomerase II family signature 613 629 1.2E-57 T 13-10-2018 RAM_06585 d9c0f09c89c123f3775c3c1f43fd020d 683 PRINTS PR00418 DNA topoisomerase II family signature 114 128 1.2E-57 T 13-10-2018 RAM_06585 d9c0f09c89c123f3775c3c1f43fd020d 683 PRINTS PR00418 DNA topoisomerase II family signature 527 543 1.2E-57 T 13-10-2018 RAM_06585 d9c0f09c89c123f3775c3c1f43fd020d 683 Gene3D G3DSA:3.30.565.10 4 239 7.2E-72 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_06585 d9c0f09c89c123f3775c3c1f43fd020d 683 ProSitePatterns PS00177 DNA topoisomerase II signature. 463 471 - T 13-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RAM_06585 d9c0f09c89c123f3775c3c1f43fd020d 683 SMART SM00387 32 193 9.5E-16 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_06585 d9c0f09c89c123f3775c3c1f43fd020d 683 Pfam PF01751 Toprim domain 460 560 2.8E-12 T 13-10-2018 IPR006171 TOPRIM domain RAM_06585 d9c0f09c89c123f3775c3c1f43fd020d 683 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 32 137 2.6E-15 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_06585 d9c0f09c89c123f3775c3c1f43fd020d 683 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 613 669 1.6E-23 T 13-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAM_06585 d9c0f09c89c123f3775c3c1f43fd020d 683 SMART SM00433 36 674 1.4E-205 T 13-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RAM_06585 d9c0f09c89c123f3775c3c1f43fd020d 683 SUPERFAMILY SSF55874 7 226 7.6E-52 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_06585 d9c0f09c89c123f3775c3c1f43fd020d 683 Pfam PF00204 DNA gyrase B 241 431 2.6E-45 T 13-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RAM_06585 d9c0f09c89c123f3775c3c1f43fd020d 683 SUPERFAMILY SSF54211 281 431 5.5E-31 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RAM_25315 10c81a7c059b2163db2fbb1c5fb24d03 445 Pfam PF00571 CBS domain 289 341 9.1E-6 T 13-10-2018 IPR000644 CBS domain RAM_25315 10c81a7c059b2163db2fbb1c5fb24d03 445 Gene3D G3DSA:3.10.580.10 202 350 3.4E-46 T 13-10-2018 RAM_25315 10c81a7c059b2163db2fbb1c5fb24d03 445 SMART SM01091 358 436 3.6E-24 T 13-10-2018 IPR005170 Transporter-associated domain RAM_25315 10c81a7c059b2163db2fbb1c5fb24d03 445 Pfam PF01595 Domain of unknown function DUF21 12 205 2.9E-31 T 13-10-2018 IPR002550 CNNM, transmembrane domain RAM_25315 10c81a7c059b2163db2fbb1c5fb24d03 445 Pfam PF03471 Transporter associated domain 359 435 4.8E-23 T 13-10-2018 IPR005170 Transporter-associated domain RAM_25315 10c81a7c059b2163db2fbb1c5fb24d03 445 SUPERFAMILY SSF54631 212 352 1.24E-29 T 13-10-2018 RAM_25315 10c81a7c059b2163db2fbb1c5fb24d03 445 Gene3D G3DSA:3.30.465.10 351 436 8.8E-22 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 RAM_25315 10c81a7c059b2163db2fbb1c5fb24d03 445 SUPERFAMILY SSF56176 358 442 7.09E-22 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RAM_29610 35a432cbb38da076a634f0a86a7be247 75 Pfam PF10935 Protein of unknown function (DUF2637) 16 65 2.1E-9 T 13-10-2018 IPR021235 Protein of unknown function DUF2637 RAM_21560 d721fa6ae8fc8a514f7d9216008f9ccd 254 Pfam PF05175 Methyltransferase small domain 88 168 2.9E-10 T 13-10-2018 IPR007848 Methyltransferase small domain GO:0008168 RAM_21560 d721fa6ae8fc8a514f7d9216008f9ccd 254 TIGRFAM TIGR03704 PrmC_rel_meth: putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific 6 251 6.0E-116 T 13-10-2018 IPR022446 Conserved hypothetical protein CHP03704, protein-(glutamine-N5) methyltransferase RAM_21560 d721fa6ae8fc8a514f7d9216008f9ccd 254 SUPERFAMILY SSF53335 42 217 1.1E-41 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_21560 d721fa6ae8fc8a514f7d9216008f9ccd 254 Gene3D G3DSA:3.40.50.150 62 244 2.2E-40 T 13-10-2018 RAM_21560 d721fa6ae8fc8a514f7d9216008f9ccd 254 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 34 231 3.9E-40 T 13-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 RAM_14600 50f3cbb06cea612058ae73a807048554 184 SUPERFAMILY SSF55729 8 151 2.7E-29 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_14600 50f3cbb06cea612058ae73a807048554 184 Pfam PF13302 Acetyltransferase (GNAT) domain 43 149 2.5E-16 T 13-10-2018 IPR000182 GNAT domain RAM_14600 50f3cbb06cea612058ae73a807048554 184 Gene3D G3DSA:3.40.630.30 7 157 1.5E-27 T 13-10-2018 RAM_20485 46c565f4c2c0d53b3045dc312bdc87cd 246 Gene3D G3DSA:3.40.50.720 3 243 1.5E-54 T 13-10-2018 RAM_20485 46c565f4c2c0d53b3045dc312bdc87cd 246 SUPERFAMILY SSF51735 6 239 1.1E-48 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_20485 46c565f4c2c0d53b3045dc312bdc87cd 246 Pfam PF00106 short chain dehydrogenase 6 202 4.3E-36 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_20485 46c565f4c2c0d53b3045dc312bdc87cd 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 4.5E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_20485 46c565f4c2c0d53b3045dc312bdc87cd 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 4.5E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_20485 46c565f4c2c0d53b3045dc312bdc87cd 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 166 185 4.5E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_20485 46c565f4c2c0d53b3045dc312bdc87cd 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 187 204 4.5E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_20485 46c565f4c2c0d53b3045dc312bdc87cd 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 4.5E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_20485 46c565f4c2c0d53b3045dc312bdc87cd 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 166 185 8.5E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_20485 46c565f4c2c0d53b3045dc312bdc87cd 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 8.5E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_20485 46c565f4c2c0d53b3045dc312bdc87cd 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 8.5E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_34000 1d2ed950b83159aedb6960cd776db738 122 Gene3D G3DSA:3.30.428.10 1 114 9.2E-32 T 13-10-2018 IPR036265 HIT-like superfamily RAM_34000 1d2ed950b83159aedb6960cd776db738 122 PRINTS PR00332 Histidine triad family signature 98 108 2.3E-16 T 13-10-2018 IPR001310 Histidine triad (HIT) protein RAM_34000 1d2ed950b83159aedb6960cd776db738 122 PRINTS PR00332 Histidine triad family signature 30 48 2.3E-16 T 13-10-2018 IPR001310 Histidine triad (HIT) protein RAM_34000 1d2ed950b83159aedb6960cd776db738 122 PRINTS PR00332 Histidine triad family signature 9 25 2.3E-16 T 13-10-2018 IPR001310 Histidine triad (HIT) protein RAM_34000 1d2ed950b83159aedb6960cd776db738 122 SUPERFAMILY SSF54197 6 111 3.56E-29 T 13-10-2018 IPR036265 HIT-like superfamily RAM_34000 1d2ed950b83159aedb6960cd776db738 122 Pfam PF01230 HIT domain 16 111 4.8E-25 T 13-10-2018 IPR001310 Histidine triad (HIT) protein RAM_35955 2b34a62534047ce895771527d34d7560 232 Gene3D G3DSA:3.40.630.30 5 231 4.8E-22 T 13-10-2018 RAM_35955 2b34a62534047ce895771527d34d7560 232 SUPERFAMILY SSF55729 37 224 6.38E-19 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_35955 2b34a62534047ce895771527d34d7560 232 Pfam PF00583 Acetyltransferase (GNAT) family 142 216 1.1E-7 T 13-10-2018 IPR000182 GNAT domain RAM_43630 960a8da366ae9b90d0b64f0277cbab89 191 SUPERFAMILY SSF102114 24 104 4.58E-9 T 13-10-2018 RAM_43630 960a8da366ae9b90d0b64f0277cbab89 191 Gene3D G3DSA:3.20.20.70 4 165 1.4E-27 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_43630 960a8da366ae9b90d0b64f0277cbab89 191 Pfam PF13353 4Fe-4S single cluster domain 16 142 2.6E-27 T 13-10-2018 RAM_43630 960a8da366ae9b90d0b64f0277cbab89 191 PIRSF PIRSF000368 1 158 5.7E-35 T 13-10-2018 IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic GO:0005737|GO:0043365|GO:0051539|GO:0055114 RAM_43630 960a8da366ae9b90d0b64f0277cbab89 191 Pfam PF04055 Radical SAM superfamily 25 104 2.0E-8 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RAM_05895 a93f9c2d05d2b02310922784feb2f5eb 88 Pfam PF10708 Protein of unknown function (DUF2510) 60 87 1.3E-7 T 13-10-2018 IPR018929 Domain of unknown function DUF2510 RAM_40075 1ddcbe94a5baaa75943e90567f123743 139 Pfam PF12802 MarR family 33 88 8.6E-13 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_40075 1ddcbe94a5baaa75943e90567f123743 139 ProSitePatterns PS01117 MarR-type HTH domain signature. 64 98 - T 13-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site RAM_40075 1ddcbe94a5baaa75943e90567f123743 139 Gene3D G3DSA:1.10.10.10 1 137 2.3E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_40075 1ddcbe94a5baaa75943e90567f123743 139 SMART SM00347 27 124 3.2E-18 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_40075 1ddcbe94a5baaa75943e90567f123743 139 PRINTS PR00598 Bacterial regulatory protein MarR family signature 114 134 8.0E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_40075 1ddcbe94a5baaa75943e90567f123743 139 PRINTS PR00598 Bacterial regulatory protein MarR family signature 66 81 8.0E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_40075 1ddcbe94a5baaa75943e90567f123743 139 PRINTS PR00598 Bacterial regulatory protein MarR family signature 85 101 8.0E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_40075 1ddcbe94a5baaa75943e90567f123743 139 PRINTS PR00598 Bacterial regulatory protein MarR family signature 49 65 8.0E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_40075 1ddcbe94a5baaa75943e90567f123743 139 SUPERFAMILY SSF46785 5 137 2.33E-25 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_31865 d9f0f8fac796f819d96acd9b821c2bb0 271 SUPERFAMILY SSF46785 15 85 3.01E-10 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_31865 d9f0f8fac796f819d96acd9b821c2bb0 271 Gene3D G3DSA:1.10.10.10 13 88 2.1E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_31865 d9f0f8fac796f819d96acd9b821c2bb0 271 Pfam PF01614 Bacterial transcriptional regulator 133 253 5.5E-18 T 13-10-2018 IPR014757 Transcription regulator IclR, C-terminal RAM_31865 d9f0f8fac796f819d96acd9b821c2bb0 271 Gene3D G3DSA:3.30.450.40 89 263 1.1E-41 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_31865 d9f0f8fac796f819d96acd9b821c2bb0 271 Pfam PF09339 IclR helix-turn-helix domain 16 69 4.9E-7 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RAM_31865 d9f0f8fac796f819d96acd9b821c2bb0 271 SMART SM00346 12 105 3.8E-5 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RAM_31865 d9f0f8fac796f819d96acd9b821c2bb0 271 SUPERFAMILY SSF55781 74 258 4.05E-38 T 13-10-2018 RAM_17265 28423ed1fcbee9cd38f8dd57830e772f 538 SUPERFAMILY SSF49785 332 535 5.53E-61 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_17265 28423ed1fcbee9cd38f8dd57830e772f 538 Gene3D G3DSA:2.60.120.260 334 534 1.3E-63 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_17265 28423ed1fcbee9cd38f8dd57830e772f 538 Gene3D G3DSA:3.40.50.1820 27 333 2.1E-66 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_17265 28423ed1fcbee9cd38f8dd57830e772f 538 SMART SM00939 304 531 2.2E-67 T 13-10-2018 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 RAM_17265 28423ed1fcbee9cd38f8dd57830e772f 538 SUPERFAMILY SSF53474 15 338 1.8E-33 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_17265 28423ed1fcbee9cd38f8dd57830e772f 538 Pfam PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain 320 530 6.6E-38 T 13-10-2018 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 RAM_17265 28423ed1fcbee9cd38f8dd57830e772f 538 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 32 289 1.7E-43 T 13-10-2018 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 RAM_17265 28423ed1fcbee9cd38f8dd57830e772f 538 TIGRFAM TIGR00976 /NonD: hydrolase CocE/NonD family protein 28 534 6.5E-98 T 13-10-2018 IPR005674 CocE/Serine esterase GO:0016787 RAM_17265 28423ed1fcbee9cd38f8dd57830e772f 538 Gene3D G3DSA:1.10.3020.10 157 240 2.1E-66 T 13-10-2018 RAM_37285 0d768c2a23b8becaa3d54a435c4d2dd1 309 Gene3D G3DSA:1.10.3720.10 70 309 2.0E-72 T 13-10-2018 IPR035906 MetI-like superfamily RAM_37285 0d768c2a23b8becaa3d54a435c4d2dd1 309 SUPERFAMILY SSF161098 74 300 2.62E-63 T 13-10-2018 IPR035906 MetI-like superfamily RAM_37285 0d768c2a23b8becaa3d54a435c4d2dd1 309 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 105 298 7.5E-14 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_26310 ac1a590a32dbbe221dc4f20ae2d15596 196 SMART SM00421 132 189 2.1E-19 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_26310 ac1a590a32dbbe221dc4f20ae2d15596 196 Pfam PF00072 Response regulator receiver domain 2 102 1.1E-9 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_26310 ac1a590a32dbbe221dc4f20ae2d15596 196 Pfam PF00196 Bacterial regulatory proteins, luxR family 134 189 3.0E-15 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_26310 ac1a590a32dbbe221dc4f20ae2d15596 196 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 135 149 3.1E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_26310 ac1a590a32dbbe221dc4f20ae2d15596 196 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 165 177 3.1E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_26310 ac1a590a32dbbe221dc4f20ae2d15596 196 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 165 3.1E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_26310 ac1a590a32dbbe221dc4f20ae2d15596 196 SUPERFAMILY SSF52172 2 117 8.4E-16 T 13-10-2018 IPR011006 CheY-like superfamily RAM_26310 ac1a590a32dbbe221dc4f20ae2d15596 196 SMART SM00448 1 102 0.009 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_26310 ac1a590a32dbbe221dc4f20ae2d15596 196 SUPERFAMILY SSF46894 132 195 5.44E-18 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_26310 ac1a590a32dbbe221dc4f20ae2d15596 196 Gene3D G3DSA:3.40.50.12740 1 195 9.6E-42 T 13-10-2018 RAM_04870 8fa12e78ee7ea6778939ca45410ec2cb 278 SUPERFAMILY SSF48179 154 276 4.87E-6 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RAM_04870 8fa12e78ee7ea6778939ca45410ec2cb 278 SUPERFAMILY SSF51735 1 149 8.1E-27 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_04870 8fa12e78ee7ea6778939ca45410ec2cb 278 Gene3D G3DSA:3.40.50.720 1 151 3.3E-34 T 13-10-2018 RAM_04870 8fa12e78ee7ea6778939ca45410ec2cb 278 Gene3D G3DSA:1.10.1040.10 152 278 4.7E-43 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RAM_04870 8fa12e78ee7ea6778939ca45410ec2cb 278 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 1 149 1.0E-17 T 13-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 RAM_04870 8fa12e78ee7ea6778939ca45410ec2cb 278 PIRSF PIRSF000103 1 278 8.1E-34 T 13-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 RAM_21350 2a83a7edaa24ec7d6bc1007d09be4de9 253 Pfam PF03861 ANTAR domain 167 214 8.8E-17 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 RAM_21350 2a83a7edaa24ec7d6bc1007d09be4de9 253 SUPERFAMILY SSF52172 99 214 3.13E-7 T 13-10-2018 IPR011006 CheY-like superfamily RAM_21350 2a83a7edaa24ec7d6bc1007d09be4de9 253 Gene3D G3DSA:1.10.10.10 162 221 1.6E-9 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_21350 2a83a7edaa24ec7d6bc1007d09be4de9 253 SMART SM01012 159 214 6.9E-17 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 RAM_26980 a4ef912bdabbb41cd0d6b4040006f0b3 404 PRINTS PR01755 Bacterial translocase SecF protein signature 188 202 1.4E-20 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RAM_26980 a4ef912bdabbb41cd0d6b4040006f0b3 404 PRINTS PR01755 Bacterial translocase SecF protein signature 271 286 1.4E-20 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RAM_26980 a4ef912bdabbb41cd0d6b4040006f0b3 404 PRINTS PR01755 Bacterial translocase SecF protein signature 64 79 1.4E-20 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RAM_26980 a4ef912bdabbb41cd0d6b4040006f0b3 404 PRINTS PR01755 Bacterial translocase SecF protein signature 236 254 1.4E-20 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RAM_26980 a4ef912bdabbb41cd0d6b4040006f0b3 404 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 65 328 7.8E-64 T 13-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 RAM_26980 a4ef912bdabbb41cd0d6b4040006f0b3 404 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 37 339 23.037 T 13-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 RAM_26980 a4ef912bdabbb41cd0d6b4040006f0b3 404 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 148 325 3.4E-48 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RAM_26980 a4ef912bdabbb41cd0d6b4040006f0b3 404 Pfam PF07549 SecD/SecF GG Motif 60 81 7.4E-5 T 13-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site RAM_26980 a4ef912bdabbb41cd0d6b4040006f0b3 404 Pfam PF02355 Protein export membrane protein 151 337 2.2E-54 T 13-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial RAM_26980 a4ef912bdabbb41cd0d6b4040006f0b3 404 SUPERFAMILY SSF82866 159 337 7.98E-28 T 13-10-2018 RAM_26980 a4ef912bdabbb41cd0d6b4040006f0b3 404 Gene3D G3DSA:1.20.1640.10 157 351 2.5E-6 T 13-10-2018 RAM_28650 2a101d7947ff08d1a017aff2405bfe80 93 Pfam PF04542 Sigma-70 region 2 27 80 1.2E-8 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_28650 2a101d7947ff08d1a017aff2405bfe80 93 SUPERFAMILY SSF88946 11 85 5.1E-11 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_28650 2a101d7947ff08d1a017aff2405bfe80 93 Gene3D G3DSA:1.10.1740.10 2 76 3.0E-6 T 13-10-2018 RAM_02255 2ae8f89ce97c57f8451bc5eee10f7285 259 SUPERFAMILY SSF53335 8 239 1.96E-40 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_02255 2ae8f89ce97c57f8451bc5eee10f7285 259 Gene3D G3DSA:3.40.50.150 17 243 2.3E-39 T 13-10-2018 RAM_02255 2ae8f89ce97c57f8451bc5eee10f7285 259 Pfam PF08241 Methyltransferase domain 36 129 6.6E-25 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 RAM_29325 3240da25c39f2fa7dc44f650f8d8eb9c 897 Pfam PF00384 Molybdopterin oxidoreductase 448 490 9.0E-7 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_29325 3240da25c39f2fa7dc44f650f8d8eb9c 897 Pfam PF00384 Molybdopterin oxidoreductase 15 420 2.2E-21 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_29325 3240da25c39f2fa7dc44f650f8d8eb9c 897 Pfam PF01568 Molydopterin dinucleotide binding domain 742 860 1.7E-13 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 RAM_29325 3240da25c39f2fa7dc44f650f8d8eb9c 897 SUPERFAMILY SSF50692 677 867 1.72E-37 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily RAM_29325 3240da25c39f2fa7dc44f650f8d8eb9c 897 Gene3D G3DSA:3.40.50.740 349 526 3.5E-52 T 13-10-2018 RAM_29325 3240da25c39f2fa7dc44f650f8d8eb9c 897 SUPERFAMILY SSF53706 3 698 1.7E-194 T 13-10-2018 RAM_29325 3240da25c39f2fa7dc44f650f8d8eb9c 897 Gene3D G3DSA:3.40.228.10 589 686 4.0E-24 T 13-10-2018 RAM_29325 3240da25c39f2fa7dc44f650f8d8eb9c 897 Gene3D G3DSA:2.40.40.20 688 867 5.3E-60 T 13-10-2018 RAM_01460 3c6bc08b558208ed771f24f36c59fa68 259 Gene3D G3DSA:1.10.10.10 175 253 1.2E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_01460 3c6bc08b558208ed771f24f36c59fa68 259 PRINTS PR00046 Major sigma-70 factor signature 203 215 3.3E-9 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RAM_01460 3c6bc08b558208ed771f24f36c59fa68 259 PRINTS PR00046 Major sigma-70 factor signature 62 75 3.3E-9 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RAM_01460 3c6bc08b558208ed771f24f36c59fa68 259 PRINTS PR00046 Major sigma-70 factor signature 220 235 3.3E-9 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RAM_01460 3c6bc08b558208ed771f24f36c59fa68 259 PRINTS PR00046 Major sigma-70 factor signature 235 246 3.3E-9 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RAM_01460 3c6bc08b558208ed771f24f36c59fa68 259 SUPERFAMILY SSF88946 18 107 5.1E-26 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_01460 3c6bc08b558208ed771f24f36c59fa68 259 SUPERFAMILY SSF88659 171 251 5.05E-17 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_01460 3c6bc08b558208ed771f24f36c59fa68 259 Gene3D G3DSA:1.20.120.1810 15 106 7.6E-16 T 13-10-2018 RAM_01460 3c6bc08b558208ed771f24f36c59fa68 259 Pfam PF04539 Sigma-70 region 3 119 162 2.0E-8 T 13-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 RAM_01460 3c6bc08b558208ed771f24f36c59fa68 259 Gene3D G3DSA:1.10.10.10 108 161 1.5E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_01460 3c6bc08b558208ed771f24f36c59fa68 259 TIGRFAM TIGR02980 SigBFG: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily 32 249 2.7E-75 T 13-10-2018 IPR014322 RNA polymerase sigma-B/F/G type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_01460 3c6bc08b558208ed771f24f36c59fa68 259 SUPERFAMILY SSF88659 106 160 6.98E-12 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_01460 3c6bc08b558208ed771f24f36c59fa68 259 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 35 248 5.6E-37 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_01460 3c6bc08b558208ed771f24f36c59fa68 259 Pfam PF04545 Sigma-70, region 4 200 247 2.0E-15 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 RAM_01460 3c6bc08b558208ed771f24f36c59fa68 259 Pfam PF04542 Sigma-70 region 2 38 107 2.6E-17 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_06840 68a2d095ddee317131bcacfcf80b38d3 213 SUPERFAMILY SSF48498 89 192 4.89E-13 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_06840 68a2d095ddee317131bcacfcf80b38d3 213 Gene3D G3DSA:1.10.357.10 7 197 1.8E-38 T 13-10-2018 RAM_06840 68a2d095ddee317131bcacfcf80b38d3 213 SUPERFAMILY SSF46689 17 84 3.84E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_06840 68a2d095ddee317131bcacfcf80b38d3 213 Pfam PF00440 Bacterial regulatory proteins, tetR family 25 66 1.5E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_26435 9f42f50d2b4710e0eccc0d358080c5c4 316 Gene3D G3DSA:3.40.50.2300 57 288 9.3E-47 T 13-10-2018 RAM_26435 9f42f50d2b4710e0eccc0d358080c5c4 316 SUPERFAMILY SSF47413 1 61 1.78E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_26435 9f42f50d2b4710e0eccc0d358080c5c4 316 Pfam PF13377 Periplasmic binding protein-like domain 160 311 3.7E-29 T 13-10-2018 RAM_26435 9f42f50d2b4710e0eccc0d358080c5c4 316 ProSitePatterns PS00356 LacI-type HTH domain signature. 6 24 - T 13-10-2018 RAM_26435 9f42f50d2b4710e0eccc0d358080c5c4 316 Gene3D G3DSA:3.40.50.2300 151 272 9.3E-47 T 13-10-2018 RAM_26435 9f42f50d2b4710e0eccc0d358080c5c4 316 SUPERFAMILY SSF53822 64 313 4.35E-42 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_26435 9f42f50d2b4710e0eccc0d358080c5c4 316 SMART SM00354 3 73 8.8E-21 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_26435 9f42f50d2b4710e0eccc0d358080c5c4 316 Gene3D G3DSA:1.10.260.40 1 56 5.5E-22 T 13-10-2018 RAM_26435 9f42f50d2b4710e0eccc0d358080c5c4 316 Pfam PF00356 Bacterial regulatory proteins, lacI family 5 50 7.9E-16 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_24830 477e7594fac6d1a3e8348f0473125579 943 Pfam PF13234 rRNA-processing arch domain 494 559 6.6E-4 T 13-10-2018 IPR025696 rRNA-processing arch domain RAM_24830 477e7594fac6d1a3e8348f0473125579 943 Gene3D G3DSA:1.10.3380.30 703 935 1.3E-14 T 13-10-2018 RAM_24830 477e7594fac6d1a3e8348f0473125579 943 SMART SM00490 348 438 4.8E-14 T 13-10-2018 IPR001650 Helicase, C-terminal RAM_24830 477e7594fac6d1a3e8348f0473125579 943 Pfam PF00270 DEAD/DEAH box helicase 39 185 4.4E-17 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RAM_24830 477e7594fac6d1a3e8348f0473125579 943 SUPERFAMILY SSF52540 45 451 1.14E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_24830 477e7594fac6d1a3e8348f0473125579 943 Pfam PF00271 Helicase conserved C-terminal domain 362 438 8.7E-5 T 13-10-2018 IPR001650 Helicase, C-terminal RAM_24830 477e7594fac6d1a3e8348f0473125579 943 SMART SM00487 32 214 6.9E-31 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RAM_24830 477e7594fac6d1a3e8348f0473125579 943 SMART SM01142 767 943 5.6E-62 T 13-10-2018 IPR012961 ATP-dependent RNA helicase Ski2, C-terminal RAM_24830 477e7594fac6d1a3e8348f0473125579 943 Gene3D G3DSA:3.40.50.300 10 209 3.8E-63 T 13-10-2018 RAM_24830 477e7594fac6d1a3e8348f0473125579 943 Gene3D G3DSA:3.40.50.300 210 469 6.7E-55 T 13-10-2018 RAM_24830 477e7594fac6d1a3e8348f0473125579 943 Pfam PF08148 DSHCT (NUC185) domain 770 939 1.3E-38 T 13-10-2018 IPR012961 ATP-dependent RNA helicase Ski2, C-terminal RAM_41235 23b37f85f069af282545811b15edecc4 306 Gene3D G3DSA:1.10.3720.10 89 297 1.1E-24 T 13-10-2018 IPR035906 MetI-like superfamily RAM_41235 23b37f85f069af282545811b15edecc4 306 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 26 77 1.4E-9 T 13-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain RAM_41235 23b37f85f069af282545811b15edecc4 306 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 118 302 1.5E-30 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_41235 23b37f85f069af282545811b15edecc4 306 SUPERFAMILY SSF161098 95 283 3.66E-25 T 13-10-2018 IPR035906 MetI-like superfamily RAM_18115 980f70e2dd8fd76d0accc22510f4e086 296 Gene3D G3DSA:1.10.10.60 191 252 8.8E-16 T 13-10-2018 RAM_18115 980f70e2dd8fd76d0accc22510f4e086 296 SUPERFAMILY SSF46689 194 244 2.87E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_18115 980f70e2dd8fd76d0accc22510f4e086 296 Gene3D G3DSA:1.10.10.60 253 296 5.5E-12 T 13-10-2018 RAM_18115 980f70e2dd8fd76d0accc22510f4e086 296 Pfam PF12833 Helix-turn-helix domain 218 295 4.4E-21 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_18115 980f70e2dd8fd76d0accc22510f4e086 296 SUPERFAMILY SSF46689 247 295 3.05E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_18115 980f70e2dd8fd76d0accc22510f4e086 296 SMART SM00342 211 294 1.9E-28 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_34285 e9264793f769601b9cf889c28e3605a6 124 Gene3D G3DSA:3.10.180.10 7 115 1.6E-19 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_34285 e9264793f769601b9cf889c28e3605a6 124 SUPERFAMILY SSF54593 9 113 1.88E-21 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_34285 e9264793f769601b9cf889c28e3605a6 124 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 10 108 6.1E-9 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RAM_15070 259107514e137e1ae48401ef915c312a 1052 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 14 860 2.8E-251 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 RAM_15070 259107514e137e1ae48401ef915c312a 1052 Gene3D G3DSA:3.40.50.620 23 650 1.4E-226 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAM_15070 259107514e137e1ae48401ef915c312a 1052 Gene3D G3DSA:3.90.740.10 209 420 1.4E-226 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 RAM_15070 259107514e137e1ae48401ef915c312a 1052 Pfam PF08264 Anticodon-binding domain of tRNA 709 846 6.9E-23 T 13-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 RAM_15070 259107514e137e1ae48401ef915c312a 1052 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 60 71 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 RAM_15070 259107514e137e1ae48401ef915c312a 1052 SUPERFAMILY SSF47323 968 1049 1.7E-5 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 RAM_15070 259107514e137e1ae48401ef915c312a 1052 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 26 658 3.4E-175 T 13-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 RAM_15070 259107514e137e1ae48401ef915c312a 1052 SUPERFAMILY SSF52374 13 657 4.46E-123 T 13-10-2018 RAM_15070 259107514e137e1ae48401ef915c312a 1052 SUPERFAMILY SSF50677 216 395 4.29E-47 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 RAM_15070 259107514e137e1ae48401ef915c312a 1052 Gene3D G3DSA:1.10.730.10 666 840 2.7E-42 T 13-10-2018 RAM_15070 259107514e137e1ae48401ef915c312a 1052 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 543 556 6.6E-32 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 RAM_15070 259107514e137e1ae48401ef915c312a 1052 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 583 592 6.6E-32 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 RAM_15070 259107514e137e1ae48401ef915c312a 1052 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 414 429 6.6E-32 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 RAM_15070 259107514e137e1ae48401ef915c312a 1052 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 240 263 6.6E-32 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 RAM_15070 259107514e137e1ae48401ef915c312a 1052 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 53 64 6.6E-32 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 RAM_15070 259107514e137e1ae48401ef915c312a 1052 SUPERFAMILY SSF47323 679 906 6.17E-44 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 RAM_15070 259107514e137e1ae48401ef915c312a 1052 Hamap MF_02003 Isoleucine--tRNA ligase [ileS]. 11 1046 13.828 T 13-10-2018 IPR023586 Isoleucine-tRNA ligase, type 2 GO:0004822 KEGG: 00970+6.1.1.5|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 RAM_10040 4bb14d4d35300c6758d462f4508d6271 269 Pfam PF08241 Methyltransferase domain 52 146 1.4E-15 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 RAM_10040 4bb14d4d35300c6758d462f4508d6271 269 SUPERFAMILY SSF53335 32 191 2.69E-29 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_10040 4bb14d4d35300c6758d462f4508d6271 269 Gene3D G3DSA:3.40.50.150 14 244 8.6E-27 T 13-10-2018 RAM_16710 a1a161cbe17c0069474ff5f3ae1d4a37 661 Gene3D G3DSA:2.60.120.200 459 657 6.3E-63 T 13-10-2018 RAM_16710 a1a161cbe17c0069474ff5f3ae1d4a37 661 SUPERFAMILY SSF49899 462 657 1.62E-27 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily RAM_16710 a1a161cbe17c0069474ff5f3ae1d4a37 661 SMART SM00637 37 136 4.2E-43 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_16710 a1a161cbe17c0069474ff5f3ae1d4a37 661 SUPERFAMILY SSF75005 166 451 3.45E-63 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily RAM_16710 a1a161cbe17c0069474ff5f3ae1d4a37 661 Pfam PF04616 Glycosyl hydrolases family 43 166 431 2.2E-36 T 13-10-2018 IPR006710 Glycoside hydrolase, family 43 GO:0004553|GO:0005975 RAM_16710 a1a161cbe17c0069474ff5f3ae1d4a37 661 Pfam PF00553 Cellulose binding domain 37 136 6.3E-32 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_16710 a1a161cbe17c0069474ff5f3ae1d4a37 661 Gene3D G3DSA:2.115.10.20 159 449 1.9E-69 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily RAM_16710 a1a161cbe17c0069474ff5f3ae1d4a37 661 Gene3D G3DSA:2.60.40.290 35 137 4.0E-32 T 13-10-2018 IPR012291 CBM2, carbohydrate-binding domain superfamily GO:0004553|GO:0030247 RAM_16710 a1a161cbe17c0069474ff5f3ae1d4a37 661 SUPERFAMILY SSF49384 33 138 6.98E-31 T 13-10-2018 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily GO:0030246 RAM_14455 829a2402409f340d9d0f9f8fa96fa0db 603 Gene3D G3DSA:2.40.30.10 305 410 7.7E-32 T 13-10-2018 RAM_14455 829a2402409f340d9d0f9f8fa96fa0db 603 Hamap MF_00065 Adenylyl-sulfate kinase [cysC]. 431 603 35.846 T 13-10-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 RAM_14455 829a2402409f340d9d0f9f8fa96fa0db 603 TIGRFAM TIGR00455 apsK: adenylyl-sulfate kinase 420 592 3.4E-66 T 13-10-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 RAM_14455 829a2402409f340d9d0f9f8fa96fa0db 603 SUPERFAMILY SSF50465 306 410 1.12E-28 T 13-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal RAM_14455 829a2402409f340d9d0f9f8fa96fa0db 603 SUPERFAMILY SSF52540 4 203 2.01E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_14455 829a2402409f340d9d0f9f8fa96fa0db 603 Pfam PF01583 Adenylylsulphate kinase 432 582 9.8E-69 T 13-10-2018 RAM_14455 829a2402409f340d9d0f9f8fa96fa0db 603 SUPERFAMILY SSF52540 430 602 2.09E-34 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_14455 829a2402409f340d9d0f9f8fa96fa0db 603 Gene3D G3DSA:3.40.50.300 1 213 1.3E-67 T 13-10-2018 RAM_14455 829a2402409f340d9d0f9f8fa96fa0db 603 PRINTS PR00315 GTP-binding elongation factor signature 5 18 1.6E-13 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_14455 829a2402409f340d9d0f9f8fa96fa0db 603 PRINTS PR00315 GTP-binding elongation factor signature 84 94 1.6E-13 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_14455 829a2402409f340d9d0f9f8fa96fa0db 603 PRINTS PR00315 GTP-binding elongation factor signature 64 72 1.6E-13 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_14455 829a2402409f340d9d0f9f8fa96fa0db 603 PRINTS PR00315 GTP-binding elongation factor signature 100 111 1.6E-13 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_14455 829a2402409f340d9d0f9f8fa96fa0db 603 PRINTS PR00315 GTP-binding elongation factor signature 137 146 1.6E-13 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_14455 829a2402409f340d9d0f9f8fa96fa0db 603 Gene3D G3DSA:3.40.50.300 415 603 3.9E-72 T 13-10-2018 RAM_14455 829a2402409f340d9d0f9f8fa96fa0db 603 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 57 72 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site RAM_14455 829a2402409f340d9d0f9f8fa96fa0db 603 SUPERFAMILY SSF50447 219 302 1.06E-16 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RAM_14455 829a2402409f340d9d0f9f8fa96fa0db 603 Pfam PF00009 Elongation factor Tu GTP binding domain 3 187 1.8E-42 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_14455 829a2402409f340d9d0f9f8fa96fa0db 603 TIGRFAM TIGR02034 CysN: sulfate adenylyltransferase, large subunit 4 409 1.5E-164 T 13-10-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 RAM_14455 829a2402409f340d9d0f9f8fa96fa0db 603 Gene3D G3DSA:2.40.30.10 214 302 5.8E-19 T 13-10-2018 RAM_32875 05559f4e18d2e6570fb470cdcb020096 592 Pfam PF09362 Domain of unknown function (DUF1996) 435 570 2.0E-16 T 13-10-2018 IPR018535 Domain of unknown function DUF1996 RAM_21630 dc9f1cdf7a89904bda90818a0f95b46f 477 SUPERFAMILY SSF48208 166 450 3.0E-40 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_21630 dc9f1cdf7a89904bda90818a0f95b46f 477 Pfam PF03663 Glycosyl hydrolase family 76 157 475 1.0E-38 T 13-10-2018 IPR005198 Glycoside hydrolase, family 76 RAM_21630 dc9f1cdf7a89904bda90818a0f95b46f 477 Gene3D G3DSA:1.50.10.20 151 475 1.1E-81 T 13-10-2018 RAM_17825 df1e514decc9ef2fe028704659ed6dac 454 SUPERFAMILY SSF55424 334 443 8.55E-19 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RAM_17825 df1e514decc9ef2fe028704659ed6dac 454 Gene3D G3DSA:3.50.50.60 6 322 4.1E-86 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_17825 df1e514decc9ef2fe028704659ed6dac 454 SUPERFAMILY SSF51905 3 328 8.33E-48 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_17825 df1e514decc9ef2fe028704659ed6dac 454 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 318 1.1E-50 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAM_17825 df1e514decc9ef2fe028704659ed6dac 454 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 337 437 7.0E-12 T 13-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RAM_17825 df1e514decc9ef2fe028704659ed6dac 454 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 392 407 1.0E-50 T 13-10-2018 RAM_17825 df1e514decc9ef2fe028704659ed6dac 454 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 257 271 1.0E-50 T 13-10-2018 RAM_17825 df1e514decc9ef2fe028704659ed6dac 454 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 298 305 1.0E-50 T 13-10-2018 RAM_17825 df1e514decc9ef2fe028704659ed6dac 454 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 135 144 1.0E-50 T 13-10-2018 RAM_17825 df1e514decc9ef2fe028704659ed6dac 454 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 172 197 1.0E-50 T 13-10-2018 RAM_17825 df1e514decc9ef2fe028704659ed6dac 454 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 414 434 1.0E-50 T 13-10-2018 RAM_17825 df1e514decc9ef2fe028704659ed6dac 454 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 333 354 1.0E-50 T 13-10-2018 RAM_17825 df1e514decc9ef2fe028704659ed6dac 454 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 1.0E-50 T 13-10-2018 RAM_17825 df1e514decc9ef2fe028704659ed6dac 454 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 39 54 1.0E-50 T 13-10-2018 RAM_17825 df1e514decc9ef2fe028704659ed6dac 454 Gene3D G3DSA:3.50.50.60 144 263 4.1E-86 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_17825 df1e514decc9ef2fe028704659ed6dac 454 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 172 190 8.0E-20 T 13-10-2018 RAM_17825 df1e514decc9ef2fe028704659ed6dac 454 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 132 150 8.0E-20 T 13-10-2018 RAM_17825 df1e514decc9ef2fe028704659ed6dac 454 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 8.0E-20 T 13-10-2018 RAM_17825 df1e514decc9ef2fe028704659ed6dac 454 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 256 272 8.0E-20 T 13-10-2018 RAM_17825 df1e514decc9ef2fe028704659ed6dac 454 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 283 305 8.0E-20 T 13-10-2018 RAM_17825 df1e514decc9ef2fe028704659ed6dac 454 Gene3D G3DSA:3.30.390.30 336 448 4.1E-18 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RAM_17825 df1e514decc9ef2fe028704659ed6dac 454 PIRSF PIRSF000350 1 447 9.1E-77 T 13-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 RAM_19060 66163a2f8161312164d977dd1cde0e82 604 SUPERFAMILY SSF52540 325 578 3.03E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_19060 66163a2f8161312164d977dd1cde0e82 604 SUPERFAMILY SSF161098 91 272 2.75E-18 T 13-10-2018 IPR035906 MetI-like superfamily RAM_19060 66163a2f8161312164d977dd1cde0e82 604 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 115 301 3.3E-20 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_19060 66163a2f8161312164d977dd1cde0e82 604 Gene3D G3DSA:1.10.3720.10 85 296 2.0E-16 T 13-10-2018 IPR035906 MetI-like superfamily RAM_19060 66163a2f8161312164d977dd1cde0e82 604 Pfam PF00005 ABC transporter 344 506 4.4E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_19060 66163a2f8161312164d977dd1cde0e82 604 ProSitePatterns PS00211 ABC transporters family signature. 479 493 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_19060 66163a2f8161312164d977dd1cde0e82 604 SMART SM00382 353 556 3.1E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_19060 66163a2f8161312164d977dd1cde0e82 604 Gene3D G3DSA:3.40.50.300 323 598 1.1E-82 T 13-10-2018 RAM_47280 9d4daf844401747834e74ac31275344b 196 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 55 7.7E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_47280 9d4daf844401747834e74ac31275344b 196 Gene3D G3DSA:1.10.357.10 2 196 4.9E-19 T 13-10-2018 RAM_47280 9d4daf844401747834e74ac31275344b 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 30 53 2.2E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_47280 9d4daf844401747834e74ac31275344b 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 10 23 2.2E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_47280 9d4daf844401747834e74ac31275344b 196 SUPERFAMILY SSF46689 4 61 6.16E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_09840 9aed6f7627571b3ca779f9c925939914 232 PIRSF PIRSF018249 1 232 7.6E-60 T 13-10-2018 IPR016718 rRNA (guanine-N1-)-methyltransferase A, predicted GO:0008168 RAM_09840 9aed6f7627571b3ca779f9c925939914 232 SUPERFAMILY SSF53335 15 192 5.91E-21 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_09840 9aed6f7627571b3ca779f9c925939914 232 Gene3D G3DSA:3.40.50.150 2 232 3.3E-48 T 13-10-2018 RAM_40305 6793d1f8c9221e9991b20540f81d0413 360 Pfam PF13808 DDE_Tnp_1-associated 1 80 4.4E-14 T 13-10-2018 IPR032806 H repeat-associated protein, N-terminal RAM_40305 6793d1f8c9221e9991b20540f81d0413 360 Pfam PF01609 Transposase DDE domain 97 326 4.1E-15 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 RAM_19195 201374a5cfacd35e60bea160b577845e 274 PIRSF PIRSF017393 1 274 2.8E-76 T 13-10-2018 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type RAM_19195 201374a5cfacd35e60bea160b577845e 274 SUPERFAMILY SSF53335 2 255 2.6E-37 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_19195 201374a5cfacd35e60bea160b577845e 274 Gene3D G3DSA:3.40.50.150 1 273 3.6E-90 T 13-10-2018 RAM_19195 201374a5cfacd35e60bea160b577845e 274 Pfam PF04672 S-adenosyl methyltransferase 1 274 3.7E-78 T 13-10-2018 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type RAM_32505 baa24bf550eccec0552997c17b765a5b 94 Pfam PF04296 Protein of unknown function (DUF448) 4 63 1.3E-16 T 13-10-2018 IPR007393 Domain of unknown function DUF448 RAM_32505 baa24bf550eccec0552997c17b765a5b 94 SUPERFAMILY SSF64376 3 58 1.96E-15 T 13-10-2018 IPR035931 YlxR-like superfamily RAM_32505 baa24bf550eccec0552997c17b765a5b 94 Gene3D G3DSA:3.30.1230.10 2 71 9.2E-9 T 13-10-2018 IPR035931 YlxR-like superfamily RAM_17805 cc961d950ae52f2bdf599599ae4d4a50 334 SUPERFAMILY SSF55961 179 330 3.17E-20 T 13-10-2018 RAM_17805 cc961d950ae52f2bdf599599ae4d4a50 334 Gene3D G3DSA:3.30.530.20 179 331 1.4E-24 T 13-10-2018 IPR023393 START-like domain superfamily RAM_17805 cc961d950ae52f2bdf599599ae4d4a50 334 Pfam PF01161 Phosphatidylethanolamine-binding protein 42 174 8.9E-36 T 13-10-2018 IPR008914 Phosphatidylethanolamine-binding protein RAM_17805 cc961d950ae52f2bdf599599ae4d4a50 334 Gene3D G3DSA:3.90.280.10 2 176 1.1E-54 T 13-10-2018 IPR036610 PEBP-like superfamily RAM_17805 cc961d950ae52f2bdf599599ae4d4a50 334 SUPERFAMILY SSF49777 16 174 4.06E-49 T 13-10-2018 IPR036610 PEBP-like superfamily RAM_17805 cc961d950ae52f2bdf599599ae4d4a50 334 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 182 328 2.6E-7 T 13-10-2018 IPR019587 Polyketide cyclase/dehydrase RAM_17805 cc961d950ae52f2bdf599599ae4d4a50 334 TIGRFAM TIGR00481 TIGR00481: Raf kinase inhibitor-like protein, YbhB/YbcL family 42 170 1.2E-35 T 13-10-2018 IPR005247 YbhB/YbcL RAM_14015 5360a9c16b4e9482eb3ae981b3cb026e 397 Gene3D G3DSA:3.40.50.1950 1 171 6.4E-49 T 13-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 RAM_14015 5360a9c16b4e9482eb3ae981b3cb026e 397 Pfam PF02441 Flavoprotein 2 161 1.6E-36 T 13-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 RAM_14015 5360a9c16b4e9482eb3ae981b3cb026e 397 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 1 391 1.3E-113 T 13-10-2018 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|MetaCyc: PWY-7851 RAM_14015 5360a9c16b4e9482eb3ae981b3cb026e 397 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 177 366 1.0E-68 T 13-10-2018 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 RAM_14015 5360a9c16b4e9482eb3ae981b3cb026e 397 SUPERFAMILY SSF52507 1 163 1.13E-51 T 13-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 RAM_14015 5360a9c16b4e9482eb3ae981b3cb026e 397 Gene3D G3DSA:3.40.50.10300 172 397 9.8E-82 T 13-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 RAM_14015 5360a9c16b4e9482eb3ae981b3cb026e 397 SUPERFAMILY SSF102645 171 395 9.94E-68 T 13-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 RAM_41100 1d6bb2ac4f10035df9af62d39dd8b4c5 217 Gene3D G3DSA:3.40.50.300 7 213 7.5E-52 T 13-10-2018 RAM_41100 1d6bb2ac4f10035df9af62d39dd8b4c5 217 ProSitePatterns PS01331 Thymidylate kinase signature. 97 109 - T 13-10-2018 IPR018095 Thymidylate kinase, conserved site GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 RAM_41100 1d6bb2ac4f10035df9af62d39dd8b4c5 217 Pfam PF02223 Thymidylate kinase 10 190 8.9E-23 T 13-10-2018 IPR039430 Thymidylate kinase-like domain KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 RAM_41100 1d6bb2ac4f10035df9af62d39dd8b4c5 217 SUPERFAMILY SSF52540 5 202 1.08E-28 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_38555 0edf786257f15f2f6a8f14315d983d0c 563 SUPERFAMILY SSF143975 5 384 1.31E-133 T 13-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RAM_38555 0edf786257f15f2f6a8f14315d983d0c 563 SUPERFAMILY SSF52016 385 562 1.18E-56 T 13-10-2018 RAM_38555 0edf786257f15f2f6a8f14315d983d0c 563 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 471 482 - T 13-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RAM_38555 0edf786257f15f2f6a8f14315d983d0c 563 Pfam PF00920 Dehydratase family 37 560 7.2E-211 T 13-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RAM_38555 0edf786257f15f2f6a8f14315d983d0c 563 Gene3D G3DSA:3.50.30.80 385 534 6.8E-54 T 13-10-2018 RAM_38555 0edf786257f15f2f6a8f14315d983d0c 563 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 7 563 45.671 T 13-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RAM_38555 0edf786257f15f2f6a8f14315d983d0c 563 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 21 562 4.8E-218 T 13-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RAM_38555 0edf786257f15f2f6a8f14315d983d0c 563 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 125 135 - T 13-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RAM_47440 54b0c70feffd3eed97dc358e18801de4 201 ProSitePatterns PS00211 ABC transporters family signature. 129 143 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_47440 54b0c70feffd3eed97dc358e18801de4 201 SMART SM00382 26 200 1.9E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_47440 54b0c70feffd3eed97dc358e18801de4 201 Gene3D G3DSA:3.40.50.300 1 201 1.1E-45 T 13-10-2018 RAM_47440 54b0c70feffd3eed97dc358e18801de4 201 SUPERFAMILY SSF52540 9 200 8.04E-43 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_47440 54b0c70feffd3eed97dc358e18801de4 201 Pfam PF00005 ABC transporter 18 155 6.9E-25 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_35720 40dcddd4149c888ea226009eaa561b94 357 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 14 131 1.5E-28 T 13-10-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RAM_35720 40dcddd4149c888ea226009eaa561b94 357 PIRSF PIRSF000188 4 355 5.1E-140 T 13-10-2018 IPR016211 Glutamate/phenylalanine/leucine/valine dehydrogenase, bacterial/archaeal GO:0016639|GO:0055114 RAM_35720 40dcddd4149c888ea226009eaa561b94 357 SUPERFAMILY SSF53223 10 144 3.52E-46 T 13-10-2018 RAM_35720 40dcddd4149c888ea226009eaa561b94 357 Gene3D G3DSA:3.40.50.720 134 338 5.8E-130 T 13-10-2018 RAM_35720 40dcddd4149c888ea226009eaa561b94 357 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 217 294 2.2E-9 T 13-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RAM_35720 40dcddd4149c888ea226009eaa561b94 357 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 66 80 8.0E-19 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RAM_35720 40dcddd4149c888ea226009eaa561b94 357 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 176 196 8.0E-19 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RAM_35720 40dcddd4149c888ea226009eaa561b94 357 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 132 154 8.0E-19 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RAM_35720 40dcddd4149c888ea226009eaa561b94 357 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 288 299 8.0E-19 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RAM_35720 40dcddd4149c888ea226009eaa561b94 357 Gene3D G3DSA:3.40.50.10860 11 345 5.8E-130 T 13-10-2018 RAM_35720 40dcddd4149c888ea226009eaa561b94 357 SUPERFAMILY SSF51735 141 352 1.28E-47 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_35720 40dcddd4149c888ea226009eaa561b94 357 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 74 87 - T 13-10-2018 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RAM_35720 40dcddd4149c888ea226009eaa561b94 357 SMART SM00839 144 353 1.9E-47 T 13-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RAM_31315 5986a252331d24805d4f1f961be3771c 954 SUPERFAMILY SSF49785 475 609 1.11E-13 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_31315 5986a252331d24805d4f1f961be3771c 954 SMART SM00382 683 864 2.3E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_31315 5986a252331d24805d4f1f961be3771c 954 SUPERFAMILY SSF53474 48 390 3.92E-40 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_31315 5986a252331d24805d4f1f961be3771c 954 Pfam PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain 480 587 6.0E-9 T 13-10-2018 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 RAM_31315 5986a252331d24805d4f1f961be3771c 954 Gene3D G3DSA:3.40.50.1820 252 390 9.7E-12 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_31315 5986a252331d24805d4f1f961be3771c 954 Gene3D G3DSA:2.60.120.260 424 612 2.6E-15 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_31315 5986a252331d24805d4f1f961be3771c 954 SMART SM00939 381 603 4.0E-6 T 13-10-2018 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 RAM_31315 5986a252331d24805d4f1f961be3771c 954 SUPERFAMILY SSF52540 656 878 3.69E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_31315 5986a252331d24805d4f1f961be3771c 954 Gene3D G3DSA:3.40.50.300 654 883 5.0E-60 T 13-10-2018 RAM_31315 5986a252331d24805d4f1f961be3771c 954 Pfam PF00005 ABC transporter 675 815 1.6E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_31315 5986a252331d24805d4f1f961be3771c 954 ProSitePatterns PS00211 ABC transporters family signature. 787 801 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_31315 5986a252331d24805d4f1f961be3771c 954 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 60 227 5.5E-13 T 13-10-2018 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 RAM_31315 5986a252331d24805d4f1f961be3771c 954 Gene3D G3DSA:3.40.50.1820 45 229 1.9E-26 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_14675 fca7f6731f55dfca4579a228badb51b9 532 SUPERFAMILY SSF52096 22 266 4.54E-61 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_14675 fca7f6731f55dfca4579a228badb51b9 532 Gene3D G3DSA:3.90.226.10 268 532 3.4E-88 T 13-10-2018 RAM_14675 fca7f6731f55dfca4579a228badb51b9 532 Gene3D G3DSA:3.90.226.10 1 267 6.4E-80 T 13-10-2018 RAM_14675 fca7f6731f55dfca4579a228badb51b9 532 SUPERFAMILY SSF52096 232 513 8.79E-76 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_14675 fca7f6731f55dfca4579a228badb51b9 532 Pfam PF01039 Carboxyl transferase domain 48 521 4.5E-136 T 13-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 RAM_04890 d597c26f80792934444466e832b02898 300 Gene3D G3DSA:3.40.190.10 161 263 3.6E-23 T 13-10-2018 RAM_04890 d597c26f80792934444466e832b02898 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 5.1E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_04890 d597c26f80792934444466e832b02898 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 5.1E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_04890 d597c26f80792934444466e832b02898 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 5.1E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_04890 d597c26f80792934444466e832b02898 300 Gene3D G3DSA:1.10.10.10 4 94 3.6E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_04890 d597c26f80792934444466e832b02898 300 SUPERFAMILY SSF53850 101 291 5.18E-23 T 13-10-2018 RAM_04890 d597c26f80792934444466e832b02898 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 1.5E-23 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_04890 d597c26f80792934444466e832b02898 300 Gene3D G3DSA:3.40.190.10 101 282 3.6E-23 T 13-10-2018 RAM_04890 d597c26f80792934444466e832b02898 300 Pfam PF03466 LysR substrate binding domain 98 286 1.5E-22 T 13-10-2018 IPR005119 LysR, substrate-binding RAM_04890 d597c26f80792934444466e832b02898 300 SUPERFAMILY SSF46785 6 87 1.7E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_43990 951d7f6b91f36b84d1fd1fcba5371b70 303 Gene3D G3DSA:2.40.10.120 1 199 1.6E-55 T 13-10-2018 RAM_43990 951d7f6b91f36b84d1fd1fcba5371b70 303 SUPERFAMILY SSF50494 7 214 1.49E-45 T 13-10-2018 IPR009003 Peptidase S1, PA clan RAM_43990 951d7f6b91f36b84d1fd1fcba5371b70 303 SUPERFAMILY SSF50156 192 297 2.23E-15 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 RAM_43990 951d7f6b91f36b84d1fd1fcba5371b70 303 Pfam PF13365 Trypsin-like peptidase domain 33 172 4.4E-30 T 13-10-2018 RAM_43990 951d7f6b91f36b84d1fd1fcba5371b70 303 Pfam PF13180 PDZ domain 229 294 1.9E-11 T 13-10-2018 IPR001478 PDZ domain GO:0005515 RAM_43990 951d7f6b91f36b84d1fd1fcba5371b70 303 Gene3D G3DSA:2.30.42.10 202 302 7.8E-17 T 13-10-2018 RAM_43990 951d7f6b91f36b84d1fd1fcba5371b70 303 SMART SM00228 207 289 1.0E-8 T 13-10-2018 IPR001478 PDZ domain GO:0005515 RAM_43990 951d7f6b91f36b84d1fd1fcba5371b70 303 PRINTS PR00834 HtrA/DegQ protease family signature 247 259 3.7E-44 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAM_43990 951d7f6b91f36b84d1fd1fcba5371b70 303 PRINTS PR00834 HtrA/DegQ protease family signature 165 182 3.7E-44 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAM_43990 951d7f6b91f36b84d1fd1fcba5371b70 303 PRINTS PR00834 HtrA/DegQ protease family signature 42 54 3.7E-44 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAM_43990 951d7f6b91f36b84d1fd1fcba5371b70 303 PRINTS PR00834 HtrA/DegQ protease family signature 63 83 3.7E-44 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAM_43990 951d7f6b91f36b84d1fd1fcba5371b70 303 PRINTS PR00834 HtrA/DegQ protease family signature 103 127 3.7E-44 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAM_43990 951d7f6b91f36b84d1fd1fcba5371b70 303 PRINTS PR00834 HtrA/DegQ protease family signature 143 160 3.7E-44 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAM_26330 547681414cbc7418c9d10bd7ab0ce27f 524 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 169 182 - T 13-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 RAM_26330 547681414cbc7418c9d10bd7ab0ce27f 524 PRINTS PR00301 70kDa heat shock protein signature 305 321 1.8E-12 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RAM_26330 547681414cbc7418c9d10bd7ab0ce27f 524 PRINTS PR00301 70kDa heat shock protein signature 3 16 1.8E-12 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RAM_26330 547681414cbc7418c9d10bd7ab0ce27f 524 PRINTS PR00301 70kDa heat shock protein signature 175 185 1.8E-12 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RAM_26330 547681414cbc7418c9d10bd7ab0ce27f 524 PRINTS PR00301 70kDa heat shock protein signature 336 356 1.8E-12 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RAM_26330 547681414cbc7418c9d10bd7ab0ce27f 524 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 308 322 - T 13-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 RAM_26330 547681414cbc7418c9d10bd7ab0ce27f 524 Pfam PF00012 Hsp70 protein 89 355 1.3E-42 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RAM_26330 547681414cbc7418c9d10bd7ab0ce27f 524 Pfam PF00012 Hsp70 protein 5 75 2.7E-7 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RAM_26330 547681414cbc7418c9d10bd7ab0ce27f 524 SUPERFAMILY SSF53067 5 156 3.89E-30 T 13-10-2018 RAM_26330 547681414cbc7418c9d10bd7ab0ce27f 524 Gene3D G3DSA:3.30.420.40 5 347 1.6E-101 T 13-10-2018 RAM_26330 547681414cbc7418c9d10bd7ab0ce27f 524 Gene3D G3DSA:3.90.640.10 202 280 1.6E-101 T 13-10-2018 RAM_26330 547681414cbc7418c9d10bd7ab0ce27f 524 Gene3D G3DSA:3.30.420.40 162 338 1.6E-101 T 13-10-2018 RAM_26330 547681414cbc7418c9d10bd7ab0ce27f 524 SUPERFAMILY SSF53067 164 351 2.39E-38 T 13-10-2018 RAM_28705 57a5cefc690d80a20b09e9adef4b3bc7 208 Gene3D G3DSA:1.10.357.10 62 198 1.0E-35 T 13-10-2018 RAM_28705 57a5cefc690d80a20b09e9adef4b3bc7 208 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 24 37 4.4E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_28705 57a5cefc690d80a20b09e9adef4b3bc7 208 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 45 68 4.4E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_28705 57a5cefc690d80a20b09e9adef4b3bc7 208 SUPERFAMILY SSF46689 14 92 3.54E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_28705 57a5cefc690d80a20b09e9adef4b3bc7 208 Pfam PF00440 Bacterial regulatory proteins, tetR family 26 68 6.2E-14 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_28705 57a5cefc690d80a20b09e9adef4b3bc7 208 Gene3D G3DSA:1.10.10.60 11 60 6.8E-16 T 13-10-2018 RAM_28065 cff3a5e1f065d9b56f31ad6e019c30ad 409 Gene3D G3DSA:3.30.565.10 268 399 1.4E-26 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_28065 cff3a5e1f065d9b56f31ad6e019c30ad 409 PIRSF PIRSF037434 7 403 1.0E-92 T 13-10-2018 IPR017205 Signal transduction histidine kinase, ChrS RAM_28065 cff3a5e1f065d9b56f31ad6e019c30ad 409 PRINTS PR00344 Bacterial sensor protein C-terminal signature 360 378 2.5E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_28065 cff3a5e1f065d9b56f31ad6e019c30ad 409 PRINTS PR00344 Bacterial sensor protein C-terminal signature 384 397 2.5E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_28065 cff3a5e1f065d9b56f31ad6e019c30ad 409 PRINTS PR00344 Bacterial sensor protein C-terminal signature 340 354 2.5E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_28065 cff3a5e1f065d9b56f31ad6e019c30ad 409 Pfam PF07730 Histidine kinase 197 264 1.3E-16 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_28065 cff3a5e1f065d9b56f31ad6e019c30ad 409 SMART SM00387 304 400 2.5E-10 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_28065 cff3a5e1f065d9b56f31ad6e019c30ad 409 SUPERFAMILY SSF55874 282 397 1.22E-19 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_28065 cff3a5e1f065d9b56f31ad6e019c30ad 409 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 309 397 2.2E-8 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_36700 70e9bed928d29f17ef8e2523ef3e29c6 144 Pfam PF13577 SnoaL-like domain 17 133 9.8E-21 T 13-10-2018 IPR037401 SnoaL-like domain RAM_36700 70e9bed928d29f17ef8e2523ef3e29c6 144 Gene3D G3DSA:3.10.450.50 15 142 2.1E-31 T 13-10-2018 RAM_36700 70e9bed928d29f17ef8e2523ef3e29c6 144 SUPERFAMILY SSF54427 15 140 9.16E-32 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_19785 f8d205d71453481cb0109291a0bd3aa2 114 Gene3D G3DSA:3.30.750.24 16 114 3.1E-10 T 13-10-2018 IPR036513 STAS domain superfamily RAM_19785 f8d205d71453481cb0109291a0bd3aa2 114 SUPERFAMILY SSF52091 22 111 6.08E-7 T 13-10-2018 IPR036513 STAS domain superfamily RAM_19250 aacd39633578e3cdefc55f53f14cbcf3 315 Gene3D G3DSA:4.10.480.10 205 285 7.6E-26 T 13-10-2018 IPR037148 [NiFe]-hydrogenase, small subunit, C-terminal domain superfamily RAM_19250 aacd39633578e3cdefc55f53f14cbcf3 315 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 9 182 4.5E-23 T 13-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_19250 aacd39633578e3cdefc55f53f14cbcf3 315 Pfam PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal 205 283 4.6E-24 T 13-10-2018 IPR027394 Cytochrome-c3 hydrogenase, C-terminal RAM_19250 aacd39633578e3cdefc55f53f14cbcf3 315 SUPERFAMILY SSF56770 7 284 6.8E-62 T 13-10-2018 RAM_19250 aacd39633578e3cdefc55f53f14cbcf3 315 PIRSF PIRSF000310 1 312 1.2E-82 T 13-10-2018 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 RAM_19250 aacd39633578e3cdefc55f53f14cbcf3 315 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 229 255 5.9E-8 T 13-10-2018 RAM_19250 aacd39633578e3cdefc55f53f14cbcf3 315 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 257 270 5.9E-8 T 13-10-2018 RAM_19250 aacd39633578e3cdefc55f53f14cbcf3 315 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 111 125 5.9E-8 T 13-10-2018 RAM_19250 aacd39633578e3cdefc55f53f14cbcf3 315 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 162 185 5.9E-8 T 13-10-2018 RAM_19250 aacd39633578e3cdefc55f53f14cbcf3 315 Gene3D G3DSA:3.40.50.700 1 203 7.7E-47 T 13-10-2018 IPR037024 [NiFe]-hydrogenase, small subunit, N-terminal domain superfamily RAM_20005 c3a028eeffeef72a42395859f59595d0 2129 Gene3D G3DSA:3.40.47.10 550 994 1.1E-185 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_20005 c3a028eeffeef72a42395859f59595d0 2129 SMART SM00823 Phosphopantetheine attachment site 2053 2125 3.6E-25 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_20005 c3a028eeffeef72a42395859f59595d0 2129 SMART SM00823 Phosphopantetheine attachment site 466 537 9.0E-12 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_20005 c3a028eeffeef72a42395859f59595d0 2129 SUPERFAMILY SSF51735 1654 1782 3.5E-16 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_20005 c3a028eeffeef72a42395859f59595d0 2129 Gene3D G3DSA:3.40.50.720 1656 2035 1.7E-102 T 13-10-2018 RAM_20005 c3a028eeffeef72a42395859f59595d0 2129 Pfam PF08659 KR domain 1793 1969 4.8E-52 T 13-10-2018 IPR013968 Polyketide synthase, ketoreductase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_20005 c3a028eeffeef72a42395859f59595d0 2129 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 811 927 1.7E-41 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal RAM_20005 c3a028eeffeef72a42395859f59595d0 2129 Gene3D G3DSA:3.30.300.30 365 461 1.3E-25 T 13-10-2018 RAM_20005 c3a028eeffeef72a42395859f59595d0 2129 SUPERFAMILY SSF53901 550 976 3.04E-97 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_20005 c3a028eeffeef72a42395859f59595d0 2129 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 1793 1971 1.2E-50 T 13-10-2018 RAM_20005 c3a028eeffeef72a42395859f59595d0 2129 ProSitePatterns PS00455 Putative AMP-binding domain signature. 152 163 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_20005 c3a028eeffeef72a42395859f59595d0 2129 SMART SM01294 2054 2121 5.6E-5 T 13-10-2018 RAM_20005 c3a028eeffeef72a42395859f59595d0 2129 Pfam PF00550 Phosphopantetheine attachment site 2055 2120 9.2E-12 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_20005 c3a028eeffeef72a42395859f59595d0 2129 Pfam PF00550 Phosphopantetheine attachment site 469 532 2.5E-6 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_20005 c3a028eeffeef72a42395859f59595d0 2129 Gene3D G3DSA:1.10.1200.10 462 546 6.0E-14 T 13-10-2018 IPR036736 ACP-like superfamily RAM_20005 c3a028eeffeef72a42395859f59595d0 2129 Gene3D G3DSA:3.10.129.110 1400 1655 1.8E-64 T 13-10-2018 RAM_20005 c3a028eeffeef72a42395859f59595d0 2129 Pfam PF00501 AMP-binding enzyme 18 371 5.2E-68 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_20005 c3a028eeffeef72a42395859f59595d0 2129 ProSitePatterns PS00012 Phosphopantetheine attachment site. 2080 2095 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_20005 c3a028eeffeef72a42395859f59595d0 2129 SUPERFAMILY SSF56801 16 466 3.53E-114 T 13-10-2018 RAM_20005 c3a028eeffeef72a42395859f59595d0 2129 Gene3D G3DSA:3.30.70.3290 995 1393 3.1E-122 T 13-10-2018 RAM_20005 c3a028eeffeef72a42395859f59595d0 2129 Gene3D G3DSA:1.10.1200.10 2036 2126 5.0E-25 T 13-10-2018 IPR036736 ACP-like superfamily RAM_20005 c3a028eeffeef72a42395859f59595d0 2129 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 716 732 - T 13-10-2018 IPR018201 Beta-ketoacyl synthase, active site RAM_20005 c3a028eeffeef72a42395859f59595d0 2129 Pfam PF13193 AMP-binding enzyme C-terminal domain 380 454 4.9E-15 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_20005 c3a028eeffeef72a42395859f59595d0 2129 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 1069 1356 5.1E-89 T 13-10-2018 IPR020801 Polyketide synthase, acyl transferase domain RAM_20005 c3a028eeffeef72a42395859f59595d0 2129 Gene3D G3DSA:3.40.366.10 1067 1348 3.1E-122 T 13-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 RAM_20005 c3a028eeffeef72a42395859f59595d0 2129 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 930 1028 5.3E-14 T 13-10-2018 IPR032821 Ketoacyl-synthetase, C-terminal extension Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_20005 c3a028eeffeef72a42395859f59595d0 2129 SMART SM00825 Beta-ketoacyl synthase 556 980 1.5E-210 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RAM_20005 c3a028eeffeef72a42395859f59595d0 2129 SUPERFAMILY SSF52151 1065 1345 2.46E-65 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RAM_20005 c3a028eeffeef72a42395859f59595d0 2129 Gene3D G3DSA:3.40.50.12780 7 364 3.4E-79 T 13-10-2018 RAM_20005 c3a028eeffeef72a42395859f59595d0 2129 SUPERFAMILY SSF47336 2050 2124 5.37E-19 T 13-10-2018 IPR036736 ACP-like superfamily RAM_20005 c3a028eeffeef72a42395859f59595d0 2129 SUPERFAMILY SSF55048 1186 1241 1.31E-8 T 13-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding RAM_20005 c3a028eeffeef72a42395859f59595d0 2129 Pfam PF14765 Polyketide synthase dehydratase 1405 1652 2.5E-36 T 13-10-2018 IPR020807 Polyketide synthase, dehydratase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_20005 c3a028eeffeef72a42395859f59595d0 2129 SMART SM00826 1405 1549 3.4E-38 T 13-10-2018 IPR020807 Polyketide synthase, dehydratase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_20005 c3a028eeffeef72a42395859f59595d0 2129 SUPERFAMILY SSF47336 464 569 2.22E-16 T 13-10-2018 IPR036736 ACP-like superfamily RAM_20005 c3a028eeffeef72a42395859f59595d0 2129 SUPERFAMILY SSF51735 1791 2026 1.8E-37 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_20005 c3a028eeffeef72a42395859f59595d0 2129 Pfam PF00698 Acyl transferase domain 1069 1333 1.5E-43 T 13-10-2018 IPR014043 Acyl transferase RAM_20005 c3a028eeffeef72a42395859f59595d0 2129 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 554 803 1.2E-89 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal RAM_30825 e712de11d3c29906a7e3e159df43799f 310 SUPERFAMILY SSF56349 9 300 1.29E-56 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RAM_30825 e712de11d3c29906a7e3e159df43799f 310 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 12 100 1.1E-17 T 13-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 RAM_30825 e712de11d3c29906a7e3e159df43799f 310 Gene3D G3DSA:1.10.443.10 121 302 7.9E-60 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 RAM_30825 e712de11d3c29906a7e3e159df43799f 310 Gene3D G3DSA:1.10.150.130 8 109 1.2E-17 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal RAM_30825 e712de11d3c29906a7e3e159df43799f 310 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 10 308 55.879 T 13-10-2018 IPR023009 Tyrosine recombinase XerC/XerD RAM_30825 e712de11d3c29906a7e3e159df43799f 310 Hamap MF_01807 Tyrosine recombinase XerD [xerD]. 8 308 54.957 T 13-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 RAM_30825 e712de11d3c29906a7e3e159df43799f 310 TIGRFAM TIGR02225 recomb_XerD: tyrosine recombinase XerD 14 308 3.1E-103 T 13-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 RAM_30825 e712de11d3c29906a7e3e159df43799f 310 Pfam PF00589 Phage integrase family 123 292 6.4E-46 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RAM_06780 a47957039f61d4f2c057186bd5ae393c 680 Gene3D G3DSA:2.60.120.260 26 153 3.0E-33 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_06780 a47957039f61d4f2c057186bd5ae393c 680 Pfam PF00754 F5/8 type C domain 32 138 4.1E-22 T 13-10-2018 IPR000421 Coagulation factor 5/8 C-terminal domain RAM_06780 a47957039f61d4f2c057186bd5ae393c 680 SUPERFAMILY SSF49265 160 339 6.45E-27 T 13-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 RAM_06780 a47957039f61d4f2c057186bd5ae393c 680 Pfam PF00041 Fibronectin type III domain 256 332 3.3E-9 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 RAM_06780 a47957039f61d4f2c057186bd5ae393c 680 Gene3D G3DSA:2.120.10.30 340 680 6.8E-98 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RAM_06780 a47957039f61d4f2c057186bd5ae393c 680 SUPERFAMILY SSF49785 23 153 5.81E-28 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_06780 a47957039f61d4f2c057186bd5ae393c 680 Gene3D G3DSA:2.60.40.10 252 339 9.2E-24 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_06780 a47957039f61d4f2c057186bd5ae393c 680 Gene3D G3DSA:2.60.40.10 159 246 7.2E-20 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_06780 a47957039f61d4f2c057186bd5ae393c 680 SUPERFAMILY SSF50952 356 661 8.24E-33 T 13-10-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 RAM_06780 a47957039f61d4f2c057186bd5ae393c 680 SMART SM00060 161 235 2.4E-7 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 RAM_06780 a47957039f61d4f2c057186bd5ae393c 680 SMART SM00060 255 326 2.8E-12 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 RAM_06780 a47957039f61d4f2c057186bd5ae393c 680 Pfam PF07995 Glucose / Sorbosone dehydrogenase 365 658 7.8E-59 T 13-10-2018 IPR012938 Glucose/Sorbosone dehydrogenase RAM_28685 44d601653574d7f36b9fd71c7cf7bad7 243 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 5 209 0.0068 T 13-10-2018 RAM_28685 44d601653574d7f36b9fd71c7cf7bad7 243 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 7.6E-6 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_28685 44d601653574d7f36b9fd71c7cf7bad7 243 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 7.6E-6 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_28685 44d601653574d7f36b9fd71c7cf7bad7 243 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 166 185 7.6E-6 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_28685 44d601653574d7f36b9fd71c7cf7bad7 243 Gene3D G3DSA:3.40.50.720 1 242 9.4E-67 T 13-10-2018 RAM_28685 44d601653574d7f36b9fd71c7cf7bad7 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 2.2E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_28685 44d601653574d7f36b9fd71c7cf7bad7 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 2.2E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_28685 44d601653574d7f36b9fd71c7cf7bad7 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 166 185 2.2E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_28685 44d601653574d7f36b9fd71c7cf7bad7 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 187 204 2.2E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_28685 44d601653574d7f36b9fd71c7cf7bad7 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 2.2E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_28685 44d601653574d7f36b9fd71c7cf7bad7 243 SUPERFAMILY SSF51735 5 239 1.28E-55 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_28685 44d601653574d7f36b9fd71c7cf7bad7 243 Pfam PF00106 short chain dehydrogenase 5 204 5.3E-41 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_41280 6cb81b218404cd82e4894c353e450229 439 SUPERFAMILY SSF47384 202 285 1.31E-17 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RAM_41280 6cb81b218404cd82e4894c353e450229 439 Gene3D G3DSA:3.30.565.10 289 436 4.1E-30 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_41280 6cb81b218404cd82e4894c353e450229 439 SUPERFAMILY SSF55874 291 434 1.02E-30 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_41280 6cb81b218404cd82e4894c353e450229 439 SMART SM00388 219 284 1.0E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_41280 6cb81b218404cd82e4894c353e450229 439 Gene3D G3DSA:1.10.287.130 172 284 1.8E-21 T 13-10-2018 RAM_41280 6cb81b218404cd82e4894c353e450229 439 PRINTS PR00344 Bacterial sensor protein C-terminal signature 360 374 6.1E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_41280 6cb81b218404cd82e4894c353e450229 439 PRINTS PR00344 Bacterial sensor protein C-terminal signature 395 413 6.1E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_41280 6cb81b218404cd82e4894c353e450229 439 PRINTS PR00344 Bacterial sensor protein C-terminal signature 378 388 6.1E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_41280 6cb81b218404cd82e4894c353e450229 439 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 332 429 1.8E-18 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_41280 6cb81b218404cd82e4894c353e450229 439 SMART SM00387 325 435 2.1E-25 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_41280 6cb81b218404cd82e4894c353e450229 439 Pfam PF00512 His Kinase A (phospho-acceptor) domain 220 284 9.3E-12 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_32110 dc502ade7bb18bfa27dbf9e0a9299e5f 317 Gene3D G3DSA:3.40.50.150 6 309 1.1E-91 T 13-10-2018 RAM_32110 dc502ade7bb18bfa27dbf9e0a9299e5f 317 Gene3D G3DSA:1.10.150.170 115 220 1.1E-91 T 13-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 RAM_32110 dc502ade7bb18bfa27dbf9e0a9299e5f 317 SUPERFAMILY SSF53335 6 313 1.02E-39 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_32110 dc502ade7bb18bfa27dbf9e0a9299e5f 317 PIRSF PIRSF004486 1 314 6.6E-96 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 RAM_32110 dc502ade7bb18bfa27dbf9e0a9299e5f 317 Pfam PF01795 MraW methylase family 5 312 6.4E-109 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 RAM_32110 dc502ade7bb18bfa27dbf9e0a9299e5f 317 SUPERFAMILY SSF81799 117 218 4.05E-33 T 13-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 RAM_32110 dc502ade7bb18bfa27dbf9e0a9299e5f 317 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 6 313 36.226 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 RAM_32110 dc502ade7bb18bfa27dbf9e0a9299e5f 317 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 4 312 3.2E-90 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 RAM_22315 ace1bb21278554ad40f0172371ca5ae2 228 Pfam PF00440 Bacterial regulatory proteins, tetR family 28 72 2.0E-14 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_22315 ace1bb21278554ad40f0172371ca5ae2 228 Gene3D G3DSA:1.10.357.10 66 216 6.1E-17 T 13-10-2018 RAM_22315 ace1bb21278554ad40f0172371ca5ae2 228 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 49 72 4.0E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_22315 ace1bb21278554ad40f0172371ca5ae2 228 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 41 4.0E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_22315 ace1bb21278554ad40f0172371ca5ae2 228 SUPERFAMILY SSF46689 17 86 2.34E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_22315 ace1bb21278554ad40f0172371ca5ae2 228 Gene3D G3DSA:1.10.10.60 15 65 1.7E-20 T 13-10-2018 RAM_05585 4e28f5ef21dcb95ac81ebf586bdb0fea 137 Pfam PF00293 NUDIX domain 10 116 1.7E-19 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RAM_05585 4e28f5ef21dcb95ac81ebf586bdb0fea 137 PRINTS PR00502 NUDIX hydrolase family signature 37 51 3.2E-9 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RAM_05585 4e28f5ef21dcb95ac81ebf586bdb0fea 137 PRINTS PR00502 NUDIX hydrolase family signature 51 66 3.2E-9 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RAM_05585 4e28f5ef21dcb95ac81ebf586bdb0fea 137 ProSitePatterns PS00893 Nudix box signature. 42 63 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RAM_05585 4e28f5ef21dcb95ac81ebf586bdb0fea 137 Gene3D G3DSA:3.90.79.10 3 127 3.6E-32 T 13-10-2018 RAM_05585 4e28f5ef21dcb95ac81ebf586bdb0fea 137 SUPERFAMILY SSF55811 7 125 1.34E-34 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RAM_31335 a911a62caeb9dcdbfed8cbc02488432d 246 Pfam PF00378 Enoyl-CoA hydratase/isomerase 10 242 1.0E-32 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RAM_31335 a911a62caeb9dcdbfed8cbc02488432d 246 SUPERFAMILY SSF52096 3 243 1.03E-47 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_31335 a911a62caeb9dcdbfed8cbc02488432d 246 Gene3D G3DSA:3.90.226.10 1 221 3.6E-54 T 13-10-2018 RAM_37035 0af77eb8d506d6f8647d4e70b84542c7 542 Gene3D G3DSA:2.60.120.260 332 532 6.4E-60 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_37035 0af77eb8d506d6f8647d4e70b84542c7 542 Gene3D G3DSA:3.40.50.1820 29 331 6.2E-63 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_37035 0af77eb8d506d6f8647d4e70b84542c7 542 Pfam PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain 319 528 1.5E-37 T 13-10-2018 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 RAM_37035 0af77eb8d506d6f8647d4e70b84542c7 542 SUPERFAMILY SSF53474 17 336 6.85E-36 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_37035 0af77eb8d506d6f8647d4e70b84542c7 542 TIGRFAM TIGR00976 /NonD: hydrolase CocE/NonD family protein 30 532 1.2E-86 T 13-10-2018 IPR005674 CocE/Serine esterase GO:0016787 RAM_37035 0af77eb8d506d6f8647d4e70b84542c7 542 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 34 291 5.0E-43 T 13-10-2018 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 RAM_37035 0af77eb8d506d6f8647d4e70b84542c7 542 Gene3D G3DSA:1.10.3020.10 159 242 6.2E-63 T 13-10-2018 RAM_37035 0af77eb8d506d6f8647d4e70b84542c7 542 SUPERFAMILY SSF49785 330 533 4.46E-57 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_37035 0af77eb8d506d6f8647d4e70b84542c7 542 SMART SM00939 302 529 5.6E-55 T 13-10-2018 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 RAM_36275 10bc5f6a39e2bc0fcce8276b9646ba94 401 SUPERFAMILY SSF51055 349 401 8.24E-14 T 13-10-2018 IPR036573 Carbohydrate-binding module superfamily 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 RAM_36275 10bc5f6a39e2bc0fcce8276b9646ba94 401 SMART SM00495 353 398 1.7E-15 T 13-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 RAM_36275 10bc5f6a39e2bc0fcce8276b9646ba94 401 Gene3D G3DSA:3.20.20.80 32 340 2.2E-65 T 13-10-2018 RAM_36275 10bc5f6a39e2bc0fcce8276b9646ba94 401 Gene3D G3DSA:2.10.10.20 353 396 4.9E-17 T 13-10-2018 RAM_36275 10bc5f6a39e2bc0fcce8276b9646ba94 401 SUPERFAMILY SSF51445 48 301 3.16E-17 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_23050 2aa80faed368ac1870029d6ea50aac38 800 SUPERFAMILY SSF81606 595 786 2.88E-7 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_23050 2aa80faed368ac1870029d6ea50aac38 800 SMART SM00331 581 790 2.3E-31 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_23050 2aa80faed368ac1870029d6ea50aac38 800 SUPERFAMILY SSF55785 437 531 3.84E-10 T 13-10-2018 IPR035965 PAS domain superfamily RAM_23050 2aa80faed368ac1870029d6ea50aac38 800 Gene3D G3DSA:3.30.450.40 120 276 4.0E-8 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_23050 2aa80faed368ac1870029d6ea50aac38 800 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 608 790 1.2E-42 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_23050 2aa80faed368ac1870029d6ea50aac38 800 SUPERFAMILY SSF55781 136 274 4.71E-8 T 13-10-2018 RAM_23050 2aa80faed368ac1870029d6ea50aac38 800 Pfam PF03861 ANTAR domain 47 95 6.0E-10 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 RAM_23050 2aa80faed368ac1870029d6ea50aac38 800 Pfam PF08447 PAS fold 439 525 1.6E-7 T 13-10-2018 IPR013655 PAS fold-3 GO:0005515 RAM_23050 2aa80faed368ac1870029d6ea50aac38 800 Gene3D G3DSA:3.30.450.20 413 529 2.8E-15 T 13-10-2018 RAM_23050 2aa80faed368ac1870029d6ea50aac38 800 SMART SM01012 40 95 9.9E-10 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 RAM_23050 2aa80faed368ac1870029d6ea50aac38 800 Gene3D G3DSA:3.30.450.20 292 406 1.1E-5 T 13-10-2018 RAM_23050 2aa80faed368ac1870029d6ea50aac38 800 Gene3D G3DSA:3.60.40.10 543 790 1.2E-56 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_39285 bd55c51c5477cdd1e2d0cead6dadae4e 772 Gene3D G3DSA:2.40.40.20 598 752 3.7E-19 T 13-10-2018 RAM_39285 bd55c51c5477cdd1e2d0cead6dadae4e 772 SUPERFAMILY SSF50692 613 751 6.1E-23 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily RAM_39285 bd55c51c5477cdd1e2d0cead6dadae4e 772 Gene3D G3DSA:3.40.50.740 65 477 3.1E-76 T 13-10-2018 RAM_39285 bd55c51c5477cdd1e2d0cead6dadae4e 772 Gene3D G3DSA:2.20.25.90 2 61 2.7E-11 T 13-10-2018 RAM_39285 bd55c51c5477cdd1e2d0cead6dadae4e 772 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 415 432 - T 13-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 RAM_39285 bd55c51c5477cdd1e2d0cead6dadae4e 772 SUPERFAMILY SSF53706 3 479 3.4E-104 T 13-10-2018 RAM_39285 bd55c51c5477cdd1e2d0cead6dadae4e 772 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 4 51 7.8E-12 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_39285 bd55c51c5477cdd1e2d0cead6dadae4e 772 Gene3D G3DSA:3.40.228.10 139 332 3.1E-76 T 13-10-2018 RAM_39285 bd55c51c5477cdd1e2d0cead6dadae4e 772 Pfam PF01568 Molydopterin dinucleotide binding domain 622 740 5.4E-15 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 RAM_39285 bd55c51c5477cdd1e2d0cead6dadae4e 772 SMART SM00926 2 56 3.1E-11 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_39285 bd55c51c5477cdd1e2d0cead6dadae4e 772 Pfam PF00384 Molybdopterin oxidoreductase 59 437 1.2E-31 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_19345 6493cb1c682602af006976b5f9ce7ebb 2230 SMART SM00560 742 875 9.1E-9 T 13-10-2018 IPR006558 LamG-like jellyroll fold RAM_19345 6493cb1c682602af006976b5f9ce7ebb 2230 SMART SM00560 949 1096 4.3E-15 T 13-10-2018 IPR006558 LamG-like jellyroll fold RAM_19345 6493cb1c682602af006976b5f9ce7ebb 2230 SMART SM00560 1166 1308 1.2E-18 T 13-10-2018 IPR006558 LamG-like jellyroll fold RAM_19345 6493cb1c682602af006976b5f9ce7ebb 2230 SMART SM00560 1379 1533 6.4E-10 T 13-10-2018 IPR006558 LamG-like jellyroll fold RAM_19345 6493cb1c682602af006976b5f9ce7ebb 2230 SMART SM00560 1828 1967 1.0E-15 T 13-10-2018 IPR006558 LamG-like jellyroll fold RAM_19345 6493cb1c682602af006976b5f9ce7ebb 2230 SMART SM00560 1617 1757 1.2E-14 T 13-10-2018 IPR006558 LamG-like jellyroll fold RAM_19345 6493cb1c682602af006976b5f9ce7ebb 2230 Gene3D G3DSA:2.60.120.200 685 882 4.5E-33 T 13-10-2018 RAM_19345 6493cb1c682602af006976b5f9ce7ebb 2230 Gene3D G3DSA:2.60.120.200 1556 1765 7.5E-37 T 13-10-2018 RAM_19345 6493cb1c682602af006976b5f9ce7ebb 2230 SUPERFAMILY SSF49899 1772 1971 4.01E-27 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily RAM_19345 6493cb1c682602af006976b5f9ce7ebb 2230 SUPERFAMILY SSF49899 676 880 8.13E-36 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily RAM_19345 6493cb1c682602af006976b5f9ce7ebb 2230 SUPERFAMILY SSF49899 1319 1542 2.11E-27 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily RAM_19345 6493cb1c682602af006976b5f9ce7ebb 2230 Gene3D G3DSA:2.60.120.200 885 1102 1.2E-30 T 13-10-2018 RAM_19345 6493cb1c682602af006976b5f9ce7ebb 2230 SUPERFAMILY SSF49899 1110 1312 1.16E-30 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily RAM_19345 6493cb1c682602af006976b5f9ce7ebb 2230 Gene3D G3DSA:2.60.120.200 1319 1542 8.9E-32 T 13-10-2018 RAM_19345 6493cb1c682602af006976b5f9ce7ebb 2230 Gene3D G3DSA:2.60.120.200 1112 1313 1.1E-30 T 13-10-2018 RAM_19345 6493cb1c682602af006976b5f9ce7ebb 2230 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 727 878 2.0E-27 T 13-10-2018 RAM_19345 6493cb1c682602af006976b5f9ce7ebb 2230 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 1813 1969 1.2E-20 T 13-10-2018 RAM_19345 6493cb1c682602af006976b5f9ce7ebb 2230 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 1364 1535 5.8E-21 T 13-10-2018 RAM_19345 6493cb1c682602af006976b5f9ce7ebb 2230 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 1149 1311 7.7E-30 T 13-10-2018 RAM_19345 6493cb1c682602af006976b5f9ce7ebb 2230 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 1600 1759 1.8E-29 T 13-10-2018 RAM_19345 6493cb1c682602af006976b5f9ce7ebb 2230 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 932 1099 1.1E-26 T 13-10-2018 RAM_19345 6493cb1c682602af006976b5f9ce7ebb 2230 SUPERFAMILY SSF49899 1557 1762 1.27E-35 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily RAM_19345 6493cb1c682602af006976b5f9ce7ebb 2230 Gene3D G3DSA:2.60.120.200 1769 1972 1.4E-27 T 13-10-2018 RAM_19345 6493cb1c682602af006976b5f9ce7ebb 2230 SUPERFAMILY SSF49899 890 1101 1.9E-31 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily RAM_40875 b519f390c6181e34b80c66695c37f951 172 SUPERFAMILY SSF55729 1 135 3.26E-25 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_40875 b519f390c6181e34b80c66695c37f951 172 Pfam PF13527 Acetyltransferase (GNAT) domain 3 129 5.8E-10 T 13-10-2018 RAM_40875 b519f390c6181e34b80c66695c37f951 172 Gene3D G3DSA:3.40.630.30 1 172 4.3E-44 T 13-10-2018 RAM_40050 a0398d405a8452ecf814b0b21b19828b 553 SUPERFAMILY SSF55190 8 113 8.63E-22 T 13-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 RAM_40050 a0398d405a8452ecf814b0b21b19828b 553 Gene3D G3DSA:3.40.50.620 122 423 8.9E-146 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAM_40050 a0398d405a8452ecf814b0b21b19828b 553 SMART SM01016 4 93 6.8E-33 T 13-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 RAM_40050 a0398d405a8452ecf814b0b21b19828b 553 Pfam PF05746 DALR anticodon binding domain 429 553 5.6E-32 T 13-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 RAM_40050 a0398d405a8452ecf814b0b21b19828b 553 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 29 553 3.3E-117 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 RAM_40050 a0398d405a8452ecf814b0b21b19828b 553 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 24 93 7.3E-23 T 13-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 RAM_40050 a0398d405a8452ecf814b0b21b19828b 553 PRINTS PR01038 Arginyl-tRNA synthetase signature 137 153 1.6E-22 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 RAM_40050 a0398d405a8452ecf814b0b21b19828b 553 PRINTS PR01038 Arginyl-tRNA synthetase signature 298 319 1.6E-22 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 RAM_40050 a0398d405a8452ecf814b0b21b19828b 553 PRINTS PR01038 Arginyl-tRNA synthetase signature 161 174 1.6E-22 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 RAM_40050 a0398d405a8452ecf814b0b21b19828b 553 PRINTS PR01038 Arginyl-tRNA synthetase signature 122 137 1.6E-22 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 RAM_40050 a0398d405a8452ecf814b0b21b19828b 553 SMART SM00836 429 553 9.2E-49 T 13-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 RAM_40050 a0398d405a8452ecf814b0b21b19828b 553 Gene3D G3DSA:1.10.730.10 424 553 8.9E-146 T 13-10-2018 RAM_40050 a0398d405a8452ecf814b0b21b19828b 553 Gene3D G3DSA:3.30.1360.70 5 110 3.5E-22 T 13-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 RAM_40050 a0398d405a8452ecf814b0b21b19828b 553 SUPERFAMILY SSF47323 424 553 1.31E-31 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 RAM_40050 a0398d405a8452ecf814b0b21b19828b 553 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 132 141 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 RAM_40050 a0398d405a8452ecf814b0b21b19828b 553 SUPERFAMILY SSF52374 119 440 7.78E-80 T 13-10-2018 RAM_40050 a0398d405a8452ecf814b0b21b19828b 553 Pfam PF00750 tRNA synthetases class I (R) 121 390 3.4E-14 T 13-10-2018 IPR035684 Arginyl-tRNA synthetase, catalytic core domain KEGG: 00970+6.1.1.19 RAM_40050 a0398d405a8452ecf814b0b21b19828b 553 Hamap MF_00123 Arginine--tRNA ligase [argS]. 8 553 24.745 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 RAM_42140 c4cd2b8c1276565ccc63ba96e490287f 381 Pfam PF09375 Imelysin 145 374 3.8E-38 T 13-10-2018 IPR018976 Imelysin-like domain RAM_42140 c4cd2b8c1276565ccc63ba96e490287f 381 Gene3D G3DSA:1.20.1420.20 138 381 3.7E-88 T 13-10-2018 IPR038352 Imelysin-like domain superfamily RAM_42140 c4cd2b8c1276565ccc63ba96e490287f 381 Pfam PF13473 Cupredoxin-like domain 16 128 9.2E-13 T 13-10-2018 IPR028096 EfeO-type cupredoxin-like domain RAM_34975 6304233a697ed4c3e02fb8ab857c0c0b 855 TIGRFAM TIGR02412 pepN_strep_liv: aminopeptidase N 5 850 0.0 T 13-10-2018 IPR012778 Peptidase M1, aminopeptidase GO:0004177|GO:0006508 KEGG: 00480+3.4.11.2 RAM_34975 6304233a697ed4c3e02fb8ab857c0c0b 855 Pfam PF01433 Peptidase family M1 domain 217 450 2.0E-57 T 13-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RAM_34975 6304233a697ed4c3e02fb8ab857c0c0b 855 SUPERFAMILY SSF63737 7 202 2.75E-39 T 13-10-2018 RAM_34975 6304233a697ed4c3e02fb8ab857c0c0b 855 Gene3D G3DSA:2.60.40.1730 12 203 5.8E-28 T 13-10-2018 RAM_34975 6304233a697ed4c3e02fb8ab857c0c0b 855 Gene3D G3DSA:1.10.390.60 210 455 2.3E-70 T 13-10-2018 RAM_34975 6304233a697ed4c3e02fb8ab857c0c0b 855 Pfam PF11838 ERAP1-like C-terminal domain 534 842 9.6E-60 T 13-10-2018 IPR024571 ERAP1-like C-terminal domain RAM_34975 6304233a697ed4c3e02fb8ab857c0c0b 855 SUPERFAMILY SSF55486 213 459 9.52E-78 T 13-10-2018 RAM_34975 6304233a697ed4c3e02fb8ab857c0c0b 855 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 268 278 3.1E-22 T 13-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RAM_34975 6304233a697ed4c3e02fb8ab857c0c0b 855 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 137 152 3.1E-22 T 13-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RAM_34975 6304233a697ed4c3e02fb8ab857c0c0b 855 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 185 200 3.1E-22 T 13-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RAM_34975 6304233a697ed4c3e02fb8ab857c0c0b 855 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 302 317 3.1E-22 T 13-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RAM_34975 6304233a697ed4c3e02fb8ab857c0c0b 855 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 321 333 3.1E-22 T 13-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RAM_29490 94d94077cc0bd403475ec4bf734ae5e5 418 Gene3D G3DSA:3.40.190.10 48 354 1.9E-92 T 13-10-2018 RAM_29490 94d94077cc0bd403475ec4bf734ae5e5 418 Gene3D G3DSA:3.40.190.10 140 407 1.9E-92 T 13-10-2018 RAM_29490 94d94077cc0bd403475ec4bf734ae5e5 418 SUPERFAMILY SSF53850 18 416 1.65E-69 T 13-10-2018 RAM_29490 94d94077cc0bd403475ec4bf734ae5e5 418 Pfam PF13416 Bacterial extracellular solute-binding protein 48 351 1.2E-39 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein RAM_38850 421773da98c7da95b8f75b38308bfbfe 460 Pfam PF01609 Transposase DDE domain 132 347 1.6E-27 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 RAM_38850 421773da98c7da95b8f75b38308bfbfe 460 SUPERFAMILY SSF53098 133 352 5.69E-30 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily RAM_38850 421773da98c7da95b8f75b38308bfbfe 460 Pfam PF13006 Insertion element 4 transposase N-terminal 15 107 2.3E-27 T 13-10-2018 IPR024473 Transposase, IS4, N-terminal RAM_36970 07dabba1f439901ad27b2b8770c7c7f8 525 SUPERFAMILY SSF56801 3 506 5.49E-136 T 13-10-2018 RAM_36970 07dabba1f439901ad27b2b8770c7c7f8 525 Gene3D G3DSA:3.40.50.12780 1 399 1.2E-100 T 13-10-2018 RAM_36970 07dabba1f439901ad27b2b8770c7c7f8 525 Gene3D G3DSA:3.30.300.310 403 508 4.3E-32 T 13-10-2018 RAM_36970 07dabba1f439901ad27b2b8770c7c7f8 525 ProSitePatterns PS00455 Putative AMP-binding domain signature. 157 168 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_36970 07dabba1f439901ad27b2b8770c7c7f8 525 Pfam PF13193 AMP-binding enzyme C-terminal domain 416 494 1.5E-22 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_36970 07dabba1f439901ad27b2b8770c7c7f8 525 Pfam PF00501 AMP-binding enzyme 5 407 4.5E-76 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_17080 62483b4b98ed49d40ea430b60c6e72ed 363 Gene3D G3DSA:1.10.287.110 1 71 3.1E-19 T 13-10-2018 IPR036869 Chaperone J-domain superfamily RAM_17080 62483b4b98ed49d40ea430b60c6e72ed 363 SUPERFAMILY SSF46565 3 84 1.96E-22 T 13-10-2018 IPR036869 Chaperone J-domain superfamily RAM_17080 62483b4b98ed49d40ea430b60c6e72ed 363 PRINTS PR00625 DnaJ domain signature 25 40 1.6E-6 T 13-10-2018 IPR001623 DnaJ domain RAM_17080 62483b4b98ed49d40ea430b60c6e72ed 363 PRINTS PR00625 DnaJ domain signature 7 25 1.6E-6 T 13-10-2018 IPR001623 DnaJ domain RAM_17080 62483b4b98ed49d40ea430b60c6e72ed 363 Pfam PF00226 DnaJ domain 5 63 9.7E-17 T 13-10-2018 IPR001623 DnaJ domain RAM_17080 62483b4b98ed49d40ea430b60c6e72ed 363 ProSitePatterns PS00636 Nt-dnaJ domain signature. 43 62 - T 13-10-2018 IPR018253 DnaJ domain, conserved site RAM_17080 62483b4b98ed49d40ea430b60c6e72ed 363 SMART SM00271 4 58 6.4E-17 T 13-10-2018 IPR001623 DnaJ domain RAM_17440 fcbb086858880f755e0ff6cc7e351dea 208 Gene3D G3DSA:2.60.120.590 31 205 5.4E-36 T 13-10-2018 IPR037151 Alpha-ketoglutarate-dependent dioxygenase AlkB-like superfamily RAM_17440 fcbb086858880f755e0ff6cc7e351dea 208 Pfam PF13532 2OG-Fe(II) oxygenase superfamily 83 203 1.0E-13 T 13-10-2018 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like RAM_17440 fcbb086858880f755e0ff6cc7e351dea 208 SUPERFAMILY SSF51197 31 203 3.57E-39 T 13-10-2018 RAM_19075 2b8a8a35c7978805dc93e94843b1f718 282 Gene3D G3DSA:3.40.50.2300 113 239 2.4E-59 T 13-10-2018 RAM_19075 2b8a8a35c7978805dc93e94843b1f718 282 SUPERFAMILY SSF53822 8 265 2.55E-53 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_19075 2b8a8a35c7978805dc93e94843b1f718 282 Pfam PF13377 Periplasmic binding protein-like domain 124 278 4.6E-29 T 13-10-2018 RAM_19075 2b8a8a35c7978805dc93e94843b1f718 282 Gene3D G3DSA:3.40.50.2300 26 261 2.4E-59 T 13-10-2018 RAM_43520 b0cfab9271ff814a4f3d306e51ee9b79 270 SUPERFAMILY SSF54001 1 252 7.03E-67 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily RAM_43520 b0cfab9271ff814a4f3d306e51ee9b79 270 Gene3D G3DSA:3.30.2140.10 3 244 1.8E-74 T 13-10-2018 RAM_43520 b0cfab9271ff814a4f3d306e51ee9b79 270 PRINTS PR01543 Arylamine N-acetyltransferase signature 67 89 1.2E-18 T 13-10-2018 IPR001447 Arylamine N-acetyltransferase GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 RAM_43520 b0cfab9271ff814a4f3d306e51ee9b79 270 PRINTS PR01543 Arylamine N-acetyltransferase signature 19 42 1.2E-18 T 13-10-2018 IPR001447 Arylamine N-acetyltransferase GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 RAM_43520 b0cfab9271ff814a4f3d306e51ee9b79 270 PRINTS PR01543 Arylamine N-acetyltransferase signature 43 66 1.2E-18 T 13-10-2018 IPR001447 Arylamine N-acetyltransferase GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 RAM_43520 b0cfab9271ff814a4f3d306e51ee9b79 270 PRINTS PR01543 Arylamine N-acetyltransferase signature 99 124 1.2E-18 T 13-10-2018 IPR001447 Arylamine N-acetyltransferase GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 RAM_43520 b0cfab9271ff814a4f3d306e51ee9b79 270 Pfam PF00797 N-acetyltransferase 19 247 9.6E-61 T 13-10-2018 IPR001447 Arylamine N-acetyltransferase GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 RAM_43520 b0cfab9271ff814a4f3d306e51ee9b79 270 Gene3D G3DSA:2.40.128.150 83 174 1.8E-74 T 13-10-2018 RAM_26995 c32d862185009d8b49a9f318d20f5e6f 355 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 260 333 1.5E-30 T 13-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 RAM_26995 c32d862185009d8b49a9f318d20f5e6f 355 SUPERFAMILY SSF46785 263 337 3.9E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_26995 c32d862185009d8b49a9f318d20f5e6f 355 Gene3D G3DSA:3.40.50.300 27 188 4.7E-36 T 13-10-2018 RAM_26995 c32d862185009d8b49a9f318d20f5e6f 355 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 31 333 1.5E-136 T 13-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 RAM_26995 c32d862185009d8b49a9f318d20f5e6f 355 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 260 334 6.0E-23 T 13-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 RAM_26995 c32d862185009d8b49a9f318d20f5e6f 355 SMART SM00382 58 191 7.9E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_26995 c32d862185009d8b49a9f318d20f5e6f 355 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 15 242 1.6E-106 T 13-10-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 RAM_26995 c32d862185009d8b49a9f318d20f5e6f 355 SUPERFAMILY SSF52540 27 257 1.35E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_26995 c32d862185009d8b49a9f318d20f5e6f 355 Gene3D G3DSA:1.10.8.60 189 263 8.7E-29 T 13-10-2018 RAM_26995 c32d862185009d8b49a9f318d20f5e6f 355 Gene3D G3DSA:1.10.10.10 264 341 6.1E-32 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_26995 c32d862185009d8b49a9f318d20f5e6f 355 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 355 159.884 T 13-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 RAM_06140 66b5ecb9db1cbe0f231ce6510a5eef0c 1107 Pfam PF00152 tRNA synthetases class II (D, K and N) 762 1102 5.3E-70 T 13-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 RAM_06140 66b5ecb9db1cbe0f231ce6510a5eef0c 1107 Pfam PF09924 Uncharacterised conserved protein (DUF2156) 261 560 3.0E-102 T 13-10-2018 IPR024320 Phosphatidylglycerol lysyltransferase, C-terminal RAM_06140 66b5ecb9db1cbe0f231ce6510a5eef0c 1107 Pfam PF16995 Transmembrane region of lysyl-tRNA synthetase 19 243 3.7E-29 T 13-10-2018 IPR031553 Lysyl-tRNA synthetase, N-terminal transmembrane region KEGG: 00970+6.1.1.6 RAM_06140 66b5ecb9db1cbe0f231ce6510a5eef0c 1107 PRINTS PR00982 Lysyl-tRNA synthetase signature 843 856 3.6E-30 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RAM_06140 66b5ecb9db1cbe0f231ce6510a5eef0c 1107 PRINTS PR00982 Lysyl-tRNA synthetase signature 989 1005 3.6E-30 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RAM_06140 66b5ecb9db1cbe0f231ce6510a5eef0c 1107 PRINTS PR00982 Lysyl-tRNA synthetase signature 861 878 3.6E-30 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RAM_06140 66b5ecb9db1cbe0f231ce6510a5eef0c 1107 PRINTS PR00982 Lysyl-tRNA synthetase signature 798 808 3.6E-30 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RAM_06140 66b5ecb9db1cbe0f231ce6510a5eef0c 1107 PRINTS PR00982 Lysyl-tRNA synthetase signature 814 830 3.6E-30 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RAM_06140 66b5ecb9db1cbe0f231ce6510a5eef0c 1107 Gene3D G3DSA:2.40.50.140 614 756 9.4E-39 T 13-10-2018 RAM_06140 66b5ecb9db1cbe0f231ce6510a5eef0c 1107 SUPERFAMILY SSF55681 761 1104 7.28E-99 T 13-10-2018 RAM_06140 66b5ecb9db1cbe0f231ce6510a5eef0c 1107 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 624 1106 36.077 T 13-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RAM_06140 66b5ecb9db1cbe0f231ce6510a5eef0c 1107 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 620 1106 3.0E-150 T 13-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RAM_06140 66b5ecb9db1cbe0f231ce6510a5eef0c 1107 Gene3D G3DSA:3.30.930.10 757 1107 2.0E-112 T 13-10-2018 RAM_06140 66b5ecb9db1cbe0f231ce6510a5eef0c 1107 SUPERFAMILY SSF50249 618 754 1.22E-34 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_06140 66b5ecb9db1cbe0f231ce6510a5eef0c 1107 Pfam PF01336 OB-fold nucleic acid binding domain 670 744 4.6E-12 T 13-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 RAM_00675 015071ff373a679487172271927e82ce 462 Pfam PF03422 Carbohydrate binding module (family 6) 334 461 1.6E-39 T 13-10-2018 IPR005084 Carbohydrate binding module family 6 GO:0030246 RAM_00675 015071ff373a679487172271927e82ce 462 SMART SM00606 326 462 2.8E-51 T 13-10-2018 IPR006584 Cellulose binding, type IV GO:0030246 RAM_00675 015071ff373a679487172271927e82ce 462 Gene3D G3DSA:2.60.120.200 29 307 4.5E-78 T 13-10-2018 RAM_00675 015071ff373a679487172271927e82ce 462 Gene3D G3DSA:2.60.120.260 310 461 1.3E-42 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_00675 015071ff373a679487172271927e82ce 462 SUPERFAMILY SSF49785 325 461 3.23E-33 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_00675 015071ff373a679487172271927e82ce 462 SUPERFAMILY SSF49899 29 306 2.49E-45 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily RAM_00675 015071ff373a679487172271927e82ce 462 Pfam PF00722 Glycosyl hydrolases family 16 102 264 2.3E-9 T 13-10-2018 IPR000757 Glycoside hydrolase family 16 GO:0004553|GO:0005975 RAM_40995 fd81501ff132e2a0c152a7d0fca55d2e 252 Pfam PF02586 SOS response associated peptidase (SRAP) 1 227 8.7E-70 T 13-10-2018 IPR003738 SOS response associated peptidase (SRAP) RAM_40995 fd81501ff132e2a0c152a7d0fca55d2e 252 SUPERFAMILY SSF143081 2 238 3.4E-66 T 13-10-2018 IPR036590 SOS response associated peptidase-like RAM_40995 fd81501ff132e2a0c152a7d0fca55d2e 252 Gene3D G3DSA:3.90.1680.10 1 238 2.1E-69 T 13-10-2018 IPR036590 SOS response associated peptidase-like RAM_40025 ffbb964d34e40524990e17d13fbce8ca 667 TIGRFAM TIGR00767 rho: transcription termination factor Rho 30 657 5.8E-200 T 13-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 RAM_40025 ffbb964d34e40524990e17d13fbce8ca 667 SMART SM00382 410 595 8.2E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_40025 ffbb964d34e40524990e17d13fbce8ca 667 SUPERFAMILY SSF68912 31 70 4.32E-5 T 13-10-2018 IPR036269 Rho termination factor, N-terminal domain superfamily RAM_40025 ffbb964d34e40524990e17d13fbce8ca 667 Gene3D G3DSA:3.40.50.300 374 657 2.9E-120 T 13-10-2018 RAM_40025 ffbb964d34e40524990e17d13fbce8ca 667 SMART SM00959 30 72 1.6E-9 T 13-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 RAM_40025 ffbb964d34e40524990e17d13fbce8ca 667 SUPERFAMILY SSF50249 293 368 2.4E-16 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_40025 ffbb964d34e40524990e17d13fbce8ca 667 Hamap MF_01884 Transcription termination factor Rho [rho]. 286 659 198.434 T 13-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 RAM_40025 ffbb964d34e40524990e17d13fbce8ca 667 Pfam PF07497 Rho termination factor, RNA-binding domain 293 368 4.0E-29 T 13-10-2018 IPR011113 Rho termination factor, RNA-binding domain GO:0003723|GO:0006353 RAM_40025 ffbb964d34e40524990e17d13fbce8ca 667 SUPERFAMILY SSF52540 332 610 3.72E-66 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_40025 ffbb964d34e40524990e17d13fbce8ca 667 SMART SM00357 294 361 2.9E-7 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 RAM_40025 ffbb964d34e40524990e17d13fbce8ca 667 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 399 603 6.3E-23 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RAM_40025 ffbb964d34e40524990e17d13fbce8ca 667 Pfam PF07498 Rho termination factor, N-terminal domain 31 69 1.4E-10 T 13-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 RAM_05345 d0e943519b83db3cae59d0cd656cf55d 530 SUPERFAMILY SSF52540 311 518 2.33E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_05345 d0e943519b83db3cae59d0cd656cf55d 530 ProSitePatterns PS00211 ABC transporters family signature. 443 457 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_05345 d0e943519b83db3cae59d0cd656cf55d 530 Pfam PF00005 ABC transporter 331 470 5.0E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_05345 d0e943519b83db3cae59d0cd656cf55d 530 Gene3D G3DSA:3.40.50.300 308 525 1.2E-56 T 13-10-2018 RAM_05345 d0e943519b83db3cae59d0cd656cf55d 530 Gene3D G3DSA:1.20.1560.10 2 301 1.3E-17 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RAM_05345 d0e943519b83db3cae59d0cd656cf55d 530 SMART SM00382 340 516 1.9E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_05345 d0e943519b83db3cae59d0cd656cf55d 530 TIGRFAM TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit 9 500 5.1E-126 T 13-10-2018 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC GO:0016021|GO:0034775|GO:0042626|GO:0045454 RAM_05345 d0e943519b83db3cae59d0cd656cf55d 530 SUPERFAMILY SSF90123 4 301 4.19E-28 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RAM_09690 70a325bd1dfd061375187ec5ba6e87da 257 SUPERFAMILY SSF46785 12 81 1.98E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_09690 70a325bd1dfd061375187ec5ba6e87da 257 SUPERFAMILY SSF55781 69 251 1.63E-47 T 13-10-2018 RAM_09690 70a325bd1dfd061375187ec5ba6e87da 257 Gene3D G3DSA:1.10.10.10 11 83 2.5E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_09690 70a325bd1dfd061375187ec5ba6e87da 257 SMART SM00346 12 99 1.7E-21 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RAM_09690 70a325bd1dfd061375187ec5ba6e87da 257 Pfam PF09339 IclR helix-turn-helix domain 14 64 2.4E-18 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RAM_09690 70a325bd1dfd061375187ec5ba6e87da 257 Gene3D G3DSA:3.30.450.40 84 254 3.3E-54 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_09690 70a325bd1dfd061375187ec5ba6e87da 257 Pfam PF01614 Bacterial transcriptional regulator 127 247 4.8E-29 T 13-10-2018 IPR014757 Transcription regulator IclR, C-terminal RAM_03585 eae02e498bfc402548c92031d6421157 73 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 4 72 2.9E-38 T 13-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 RAM_03585 eae02e498bfc402548c92031d6421157 73 SUPERFAMILY SSF50249 4 72 3.26E-27 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_03585 eae02e498bfc402548c92031d6421157 73 Pfam PF01176 Translation initiation factor 1A / IF-1 8 71 2.3E-29 T 13-10-2018 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 RAM_03585 eae02e498bfc402548c92031d6421157 73 Gene3D G3DSA:2.40.50.140 1 73 8.5E-39 T 13-10-2018 RAM_03585 eae02e498bfc402548c92031d6421157 73 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 2 73 26.654 T 13-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 RAM_46855 4271727646648da79fa9c887e8e9dcc4 275 Pfam PF00294 pfkB family carbohydrate kinase 4 174 8.2E-16 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB RAM_46855 4271727646648da79fa9c887e8e9dcc4 275 Pfam PF00294 pfkB family carbohydrate kinase 182 264 1.7E-14 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB RAM_46855 4271727646648da79fa9c887e8e9dcc4 275 PRINTS PR00990 Ribokinase signature 30 49 2.3E-7 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 RAM_46855 4271727646648da79fa9c887e8e9dcc4 275 PRINTS PR00990 Ribokinase signature 190 201 2.3E-7 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 RAM_46855 4271727646648da79fa9c887e8e9dcc4 275 PRINTS PR00990 Ribokinase signature 3 24 2.3E-7 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 RAM_46855 4271727646648da79fa9c887e8e9dcc4 275 SUPERFAMILY SSF53613 1 265 9.51E-43 T 13-10-2018 IPR029056 Ribokinase-like RAM_46855 4271727646648da79fa9c887e8e9dcc4 275 Gene3D G3DSA:3.40.1190.20 1 272 3.9E-51 T 13-10-2018 IPR029056 Ribokinase-like RAM_46855 4271727646648da79fa9c887e8e9dcc4 275 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 220 233 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RAM_25570 3bf425a46e6d2af2ad633b4b1c3775d0 234 Pfam PF00005 ABC transporter 21 152 2.1E-26 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_25570 3bf425a46e6d2af2ad633b4b1c3775d0 234 SMART SM00382 30 202 2.8E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_25570 3bf425a46e6d2af2ad633b4b1c3775d0 234 Gene3D G3DSA:3.40.50.300 2 231 5.1E-62 T 13-10-2018 RAM_25570 3bf425a46e6d2af2ad633b4b1c3775d0 234 SUPERFAMILY SSF52540 7 215 1.3E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_25570 3bf425a46e6d2af2ad633b4b1c3775d0 234 ProSitePatterns PS00211 ABC transporters family signature. 125 139 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_06935 e048a006cefdab4864408be879f543fc 314 Pfam PF00753 Metallo-beta-lactamase superfamily 28 215 6.2E-13 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_06935 e048a006cefdab4864408be879f543fc 314 SMART SM00849 30 215 3.4E-12 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_06935 e048a006cefdab4864408be879f543fc 314 Gene3D G3DSA:3.60.15.10 5 242 1.6E-34 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_06935 e048a006cefdab4864408be879f543fc 314 SUPERFAMILY SSF56281 25 245 1.02E-36 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_18695 75e0ea9e3d417ed4536b7fab3703f201 301 Gene3D G3DSA:1.10.10.10 1 89 2.7E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_18695 75e0ea9e3d417ed4536b7fab3703f201 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 2.6E-20 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_18695 75e0ea9e3d417ed4536b7fab3703f201 301 Pfam PF03466 LysR substrate binding domain 87 292 6.6E-41 T 13-10-2018 IPR005119 LysR, substrate-binding RAM_18695 75e0ea9e3d417ed4536b7fab3703f201 301 SUPERFAMILY SSF53850 89 294 1.09E-39 T 13-10-2018 RAM_18695 75e0ea9e3d417ed4536b7fab3703f201 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 8.5E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_18695 75e0ea9e3d417ed4536b7fab3703f201 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 8.5E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_18695 75e0ea9e3d417ed4536b7fab3703f201 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 8.5E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_18695 75e0ea9e3d417ed4536b7fab3703f201 301 SUPERFAMILY SSF46785 2 111 2.29E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_18695 75e0ea9e3d417ed4536b7fab3703f201 301 Gene3D G3DSA:3.40.190.290 90 297 2.2E-45 T 13-10-2018 RAM_08370 d82da67195d93286e0431f08d24498cf 587 Gene3D G3DSA:2.60.40.10 205 290 1.9E-11 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_08370 d82da67195d93286e0431f08d24498cf 587 SUPERFAMILY SSF49303 202 290 2.88E-12 T 13-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily RAM_08370 d82da67195d93286e0431f08d24498cf 587 SUPERFAMILY SSF51445 287 571 1.51E-61 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_08370 d82da67195d93286e0431f08d24498cf 587 SUPERFAMILY SSF49785 29 197 3.12E-48 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_08370 d82da67195d93286e0431f08d24498cf 587 Gene3D G3DSA:2.60.120.260 33 197 1.1E-40 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_08370 d82da67195d93286e0431f08d24498cf 587 Pfam PF00703 Glycosyl hydrolases family 2 238 289 7.7E-8 T 13-10-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RAM_08370 d82da67195d93286e0431f08d24498cf 587 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 330 452 1.8E-6 T 13-10-2018 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 RAM_08370 d82da67195d93286e0431f08d24498cf 587 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 83 158 1.5E-14 T 13-10-2018 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_08370 d82da67195d93286e0431f08d24498cf 587 Gene3D G3DSA:3.20.20.80 301 580 4.8E-50 T 13-10-2018 RAM_20415 88ac395e0558e2b58ce8f9cb84775555 462 SMART SM00633 90 341 7.4E-119 T 13-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_20415 88ac395e0558e2b58ce8f9cb84775555 462 SUPERFAMILY SSF51445 50 342 3.45E-104 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_20415 88ac395e0558e2b58ce8f9cb84775555 462 Gene3D G3DSA:2.60.40.290 374 462 3.1E-17 T 13-10-2018 IPR012291 CBM2, carbohydrate-binding domain superfamily GO:0004553|GO:0030247 RAM_20415 88ac395e0558e2b58ce8f9cb84775555 462 SMART SM00637 377 459 1.5E-10 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_20415 88ac395e0558e2b58ce8f9cb84775555 462 Gene3D G3DSA:3.20.20.80 44 347 7.9E-114 T 13-10-2018 RAM_20415 88ac395e0558e2b58ce8f9cb84775555 462 SUPERFAMILY SSF49384 374 459 4.12E-15 T 13-10-2018 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily GO:0030246 RAM_20415 88ac395e0558e2b58ce8f9cb84775555 462 Pfam PF00331 Glycosyl hydrolase family 10 49 339 1.2E-102 T 13-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_20415 88ac395e0558e2b58ce8f9cb84775555 462 PRINTS PR00134 Glycosyl hydrolase family 10 signature 236 248 2.2E-15 T 13-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_20415 88ac395e0558e2b58ce8f9cb84775555 462 PRINTS PR00134 Glycosyl hydrolase family 10 signature 206 217 2.2E-15 T 13-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_20415 88ac395e0558e2b58ce8f9cb84775555 462 PRINTS PR00134 Glycosyl hydrolase family 10 signature 121 133 2.2E-15 T 13-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_20415 88ac395e0558e2b58ce8f9cb84775555 462 PRINTS PR00134 Glycosyl hydrolase family 10 signature 163 174 2.2E-15 T 13-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_46070 0197e2ada2ee58b7332703a1e9d38f07 605 Pfam PF00149 Calcineurin-like phosphoesterase 46 208 7.6E-7 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 RAM_46070 0197e2ada2ee58b7332703a1e9d38f07 605 SUPERFAMILY SSF56300 44 270 2.32E-20 T 13-10-2018 RAM_46070 0197e2ada2ee58b7332703a1e9d38f07 605 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 444 601 7.0E-16 T 13-10-2018 RAM_46070 0197e2ada2ee58b7332703a1e9d38f07 605 SUPERFAMILY SSF49899 352 601 8.57E-24 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily RAM_46070 0197e2ada2ee58b7332703a1e9d38f07 605 Gene3D G3DSA:3.60.21.10 29 306 1.2E-11 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like RAM_46070 0197e2ada2ee58b7332703a1e9d38f07 605 Gene3D G3DSA:2.60.120.200 446 603 5.3E-15 T 13-10-2018 RAM_03675 e0e6e52ce5abbfe2c8b52024bd497c8e 657 Gene3D G3DSA:3.30.420.40 1 367 1.4E-86 T 13-10-2018 RAM_03675 e0e6e52ce5abbfe2c8b52024bd497c8e 657 TIGRFAM TIGR03931 T7SS_Rv3446c: type VII secretion-associated protein, Rv3446c family 502 655 4.9E-16 T 13-10-2018 IPR023840 Type VII secretion system Rv3446c RAM_03675 e0e6e52ce5abbfe2c8b52024bd497c8e 657 Gene3D G3DSA:3.90.640.10 220 307 1.4E-86 T 13-10-2018 RAM_03675 e0e6e52ce5abbfe2c8b52024bd497c8e 657 Pfam PF00012 Hsp70 protein 137 367 6.1E-25 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RAM_03675 e0e6e52ce5abbfe2c8b52024bd497c8e 657 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 175 188 - T 13-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 RAM_03675 e0e6e52ce5abbfe2c8b52024bd497c8e 657 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 329 343 - T 13-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 RAM_03675 e0e6e52ce5abbfe2c8b52024bd497c8e 657 SUPERFAMILY SSF53067 1 149 6.96E-18 T 13-10-2018 RAM_03675 e0e6e52ce5abbfe2c8b52024bd497c8e 657 SUPERFAMILY SSF53067 170 369 8.64E-34 T 13-10-2018 RAM_03675 e0e6e52ce5abbfe2c8b52024bd497c8e 657 PRINTS PR00301 70kDa heat shock protein signature 48 56 4.6E-6 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RAM_03675 e0e6e52ce5abbfe2c8b52024bd497c8e 657 PRINTS PR00301 70kDa heat shock protein signature 356 376 4.6E-6 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RAM_03675 e0e6e52ce5abbfe2c8b52024bd497c8e 657 PRINTS PR00301 70kDa heat shock protein signature 326 342 4.6E-6 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RAM_03675 e0e6e52ce5abbfe2c8b52024bd497c8e 657 PRINTS PR00301 70kDa heat shock protein signature 181 191 4.6E-6 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RAM_03675 e0e6e52ce5abbfe2c8b52024bd497c8e 657 Gene3D G3DSA:3.30.420.40 161 357 1.4E-86 T 13-10-2018 RAM_36840 5e53db938f6a75907442ac9b8c3d9936 245 SUPERFAMILY SSF51735 7 244 7.48E-77 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_36840 5e53db938f6a75907442ac9b8c3d9936 245 Gene3D G3DSA:3.40.50.720 1 245 2.0E-77 T 13-10-2018 RAM_36840 5e53db938f6a75907442ac9b8c3d9936 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 8.0E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36840 5e53db938f6a75907442ac9b8c3d9936 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 8.0E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36840 5e53db938f6a75907442ac9b8c3d9936 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 8.0E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36840 5e53db938f6a75907442ac9b8c3d9936 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 5.8E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36840 5e53db938f6a75907442ac9b8c3d9936 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 5.8E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36840 5e53db938f6a75907442ac9b8c3d9936 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 5.8E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36840 5e53db938f6a75907442ac9b8c3d9936 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 5.8E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36840 5e53db938f6a75907442ac9b8c3d9936 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 5.8E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36840 5e53db938f6a75907442ac9b8c3d9936 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 5.8E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36840 5e53db938f6a75907442ac9b8c3d9936 245 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 244 9.7E-55 T 13-10-2018 RAM_36840 5e53db938f6a75907442ac9b8c3d9936 245 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 193 2.7E-4 T 13-10-2018 RAM_36840 5e53db938f6a75907442ac9b8c3d9936 245 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_07000 f3baf57e88e3c43448ef81bd0f233d96 356 Pfam PF02653 Branched-chain amino acid transport system / permease component 54 325 7.6E-42 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 RAM_21930 653b6953e66f3093725cd5a9ad50c2f8 280 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 102 271 4.9E-24 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_21930 653b6953e66f3093725cd5a9ad50c2f8 280 SUPERFAMILY SSF161098 78 259 7.19E-33 T 13-10-2018 IPR035906 MetI-like superfamily RAM_21930 653b6953e66f3093725cd5a9ad50c2f8 280 Gene3D G3DSA:1.10.3720.10 79 272 1.8E-28 T 13-10-2018 IPR035906 MetI-like superfamily RAM_15320 1d3e05a4ee0b09838a63b8e859cf2953 469 SMART SM00304 191 243 1.4E-14 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_15320 1d3e05a4ee0b09838a63b8e859cf2953 469 Pfam PF00512 His Kinase A (phospho-acceptor) domain 253 318 1.2E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_15320 1d3e05a4ee0b09838a63b8e859cf2953 469 SMART SM00387 360 468 1.8E-32 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_15320 1d3e05a4ee0b09838a63b8e859cf2953 469 Gene3D G3DSA:1.10.287.130 246 322 5.8E-18 T 13-10-2018 RAM_15320 1d3e05a4ee0b09838a63b8e859cf2953 469 Pfam PF00672 HAMP domain 191 240 3.3E-11 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_15320 1d3e05a4ee0b09838a63b8e859cf2953 469 SUPERFAMILY SSF158472 191 241 1.7E-8 T 13-10-2018 RAM_15320 1d3e05a4ee0b09838a63b8e859cf2953 469 SUPERFAMILY SSF55874 308 465 3.14E-35 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_15320 1d3e05a4ee0b09838a63b8e859cf2953 469 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 361 466 2.0E-21 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_15320 1d3e05a4ee0b09838a63b8e859cf2953 469 Gene3D G3DSA:1.20.1480.50 153 245 3.9E-10 T 13-10-2018 RAM_15320 1d3e05a4ee0b09838a63b8e859cf2953 469 SUPERFAMILY SSF47384 235 319 2.75E-15 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RAM_15320 1d3e05a4ee0b09838a63b8e859cf2953 469 Gene3D G3DSA:3.30.565.10 323 468 2.1E-32 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_15320 1d3e05a4ee0b09838a63b8e859cf2953 469 SMART SM00388 251 318 8.4E-17 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_15320 1d3e05a4ee0b09838a63b8e859cf2953 469 PRINTS PR00344 Bacterial sensor protein C-terminal signature 413 423 1.4E-16 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_15320 1d3e05a4ee0b09838a63b8e859cf2953 469 PRINTS PR00344 Bacterial sensor protein C-terminal signature 395 409 1.4E-16 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_15320 1d3e05a4ee0b09838a63b8e859cf2953 469 PRINTS PR00344 Bacterial sensor protein C-terminal signature 452 465 1.4E-16 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_15320 1d3e05a4ee0b09838a63b8e859cf2953 469 PRINTS PR00344 Bacterial sensor protein C-terminal signature 429 447 1.4E-16 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_32975 8ad2b8e183a98949a8b35ba25241b3f5 485 SUPERFAMILY SSF50370 363 484 1.35E-38 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_32975 8ad2b8e183a98949a8b35ba25241b3f5 485 SMART SM00633 85 350 5.0E-107 T 13-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_32975 8ad2b8e183a98949a8b35ba25241b3f5 485 Pfam PF00652 Ricin-type beta-trefoil lectin domain 359 482 2.4E-28 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_32975 8ad2b8e183a98949a8b35ba25241b3f5 485 Gene3D G3DSA:3.20.20.80 39 351 2.2E-109 T 13-10-2018 RAM_32975 8ad2b8e183a98949a8b35ba25241b3f5 485 SMART SM00458 358 485 2.2E-28 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_32975 8ad2b8e183a98949a8b35ba25241b3f5 485 SUPERFAMILY SSF51445 43 350 1.24E-106 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_32975 8ad2b8e183a98949a8b35ba25241b3f5 485 PRINTS PR00134 Glycosyl hydrolase family 10 signature 231 243 2.0E-15 T 13-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_32975 8ad2b8e183a98949a8b35ba25241b3f5 485 PRINTS PR00134 Glycosyl hydrolase family 10 signature 158 169 2.0E-15 T 13-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_32975 8ad2b8e183a98949a8b35ba25241b3f5 485 PRINTS PR00134 Glycosyl hydrolase family 10 signature 116 128 2.0E-15 T 13-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_32975 8ad2b8e183a98949a8b35ba25241b3f5 485 PRINTS PR00134 Glycosyl hydrolase family 10 signature 202 213 2.0E-15 T 13-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_32975 8ad2b8e183a98949a8b35ba25241b3f5 485 Pfam PF00331 Glycosyl hydrolase family 10 43 348 1.6E-99 T 13-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_32975 8ad2b8e183a98949a8b35ba25241b3f5 485 Gene3D G3DSA:2.80.10.50 354 483 5.5E-40 T 13-10-2018 RAM_24150 cae3456a5f7976a25fb0416c9370c6d7 363 SUPERFAMILY SSF53098 205 344 3.79E-6 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily RAM_24150 cae3456a5f7976a25fb0416c9370c6d7 363 SUPERFAMILY SSF46689 30 138 4.84E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_24150 cae3456a5f7976a25fb0416c9370c6d7 363 Pfam PF13358 DDE superfamily endonuclease 175 320 2.2E-20 T 13-10-2018 IPR038717 Tc1-like transposase, DDE domain RAM_24150 cae3456a5f7976a25fb0416c9370c6d7 363 Pfam PF13565 Homeodomain-like domain 63 134 1.9E-12 T 13-10-2018 RAM_16335 cae3456a5f7976a25fb0416c9370c6d7 363 SUPERFAMILY SSF53098 205 344 3.79E-6 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily RAM_16335 cae3456a5f7976a25fb0416c9370c6d7 363 SUPERFAMILY SSF46689 30 138 4.84E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_16335 cae3456a5f7976a25fb0416c9370c6d7 363 Pfam PF13358 DDE superfamily endonuclease 175 320 2.2E-20 T 13-10-2018 IPR038717 Tc1-like transposase, DDE domain RAM_16335 cae3456a5f7976a25fb0416c9370c6d7 363 Pfam PF13565 Homeodomain-like domain 63 134 1.9E-12 T 13-10-2018 RAM_10265 f457cda6399811c96f779a25926e9e85 403 SUPERFAMILY SSF53686 4 389 2.23E-87 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RAM_10265 f457cda6399811c96f779a25926e9e85 403 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 75 380 1.5E-66 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RAM_10265 f457cda6399811c96f779a25926e9e85 403 Gene3D G3DSA:3.40.50.1100 60 386 8.8E-110 T 13-10-2018 RAM_10265 f457cda6399811c96f779a25926e9e85 403 Gene3D G3DSA:3.40.50.1100 111 208 8.8E-110 T 13-10-2018 RAM_42550 8c8727a3fb351e225e0c7ba30886786c 225 Gene3D G3DSA:3.40.50.2300 1 119 6.5E-31 T 13-10-2018 RAM_42550 8c8727a3fb351e225e0c7ba30886786c 225 SMART SM00862 145 217 1.2E-19 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_42550 8c8727a3fb351e225e0c7ba30886786c 225 Pfam PF00072 Response regulator receiver domain 3 112 1.0E-22 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_42550 8c8727a3fb351e225e0c7ba30886786c 225 Pfam PF00486 Transcriptional regulatory protein, C terminal 147 217 6.6E-18 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_42550 8c8727a3fb351e225e0c7ba30886786c 225 SMART SM00448 1 112 2.1E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_42550 8c8727a3fb351e225e0c7ba30886786c 225 Gene3D G3DSA:1.10.10.10 120 224 8.8E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_42550 8c8727a3fb351e225e0c7ba30886786c 225 SUPERFAMILY SSF52172 2 169 7.47E-34 T 13-10-2018 IPR011006 CheY-like superfamily RAM_39020 e19897a1c973068cdc562b39712bb6dd 547 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 419 520 4.9E-24 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_39020 e19897a1c973068cdc562b39712bb6dd 547 Gene3D G3DSA:1.10.287.130 267 369 3.6E-17 T 13-10-2018 RAM_39020 e19897a1c973068cdc562b39712bb6dd 547 PRINTS PR00344 Bacterial sensor protein C-terminal signature 506 519 9.7E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_39020 e19897a1c973068cdc562b39712bb6dd 547 PRINTS PR00344 Bacterial sensor protein C-terminal signature 483 501 9.7E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_39020 e19897a1c973068cdc562b39712bb6dd 547 PRINTS PR00344 Bacterial sensor protein C-terminal signature 450 464 9.7E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_39020 e19897a1c973068cdc562b39712bb6dd 547 SMART SM00387 412 522 3.6E-34 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_39020 e19897a1c973068cdc562b39712bb6dd 547 Pfam PF00672 HAMP domain 210 255 2.7E-7 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_39020 e19897a1c973068cdc562b39712bb6dd 547 Pfam PF00512 His Kinase A (phospho-acceptor) domain 304 369 9.6E-13 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_39020 e19897a1c973068cdc562b39712bb6dd 547 SMART SM00304 208 260 1.3E-6 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_39020 e19897a1c973068cdc562b39712bb6dd 547 Gene3D G3DSA:1.20.1440.210 54 165 1.9E-6 T 13-10-2018 RAM_39020 e19897a1c973068cdc562b39712bb6dd 547 SUPERFAMILY SSF55874 360 520 1.7E-35 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_39020 e19897a1c973068cdc562b39712bb6dd 547 Gene3D G3DSA:3.30.565.10 378 525 7.9E-35 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_39020 e19897a1c973068cdc562b39712bb6dd 547 Pfam PF05227 CHASE3 domain 57 162 8.7E-12 T 13-10-2018 IPR007891 CHASE3 RAM_39020 e19897a1c973068cdc562b39712bb6dd 547 Gene3D G3DSA:1.20.1480.50 171 266 4.3E-7 T 13-10-2018 RAM_39020 e19897a1c973068cdc562b39712bb6dd 547 SUPERFAMILY SSF158472 209 256 2.48E-5 T 13-10-2018 RAM_39020 e19897a1c973068cdc562b39712bb6dd 547 SUPERFAMILY SSF47384 289 369 1.96E-17 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RAM_39020 e19897a1c973068cdc562b39712bb6dd 547 SMART SM00388 303 371 3.9E-11 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_32615 01e504aee2c62a51b7d63c32898ecf7d 680 Pfam PF13424 Tetratricopeptide repeat 597 663 2.5E-7 T 13-10-2018 RAM_32615 01e504aee2c62a51b7d63c32898ecf7d 680 SMART SM00028 633 666 160.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_32615 01e504aee2c62a51b7d63c32898ecf7d 680 SMART SM00028 553 586 440.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_32615 01e504aee2c62a51b7d63c32898ecf7d 680 SMART SM00028 473 506 47.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_32615 01e504aee2c62a51b7d63c32898ecf7d 680 SMART SM00028 513 546 11.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_32615 01e504aee2c62a51b7d63c32898ecf7d 680 SMART SM00028 593 626 160.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_32615 01e504aee2c62a51b7d63c32898ecf7d 680 PRINTS PR00364 Disease resistance protein signature 60 75 1.1E-9 T 13-10-2018 RAM_32615 01e504aee2c62a51b7d63c32898ecf7d 680 PRINTS PR00364 Disease resistance protein signature 137 151 1.1E-9 T 13-10-2018 RAM_32615 01e504aee2c62a51b7d63c32898ecf7d 680 PRINTS PR00364 Disease resistance protein signature 224 238 1.1E-9 T 13-10-2018 RAM_32615 01e504aee2c62a51b7d63c32898ecf7d 680 Gene3D G3DSA:1.25.40.10 435 674 2.9E-29 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_32615 01e504aee2c62a51b7d63c32898ecf7d 680 Pfam PF00931 NB-ARC domain 55 294 2.6E-9 T 13-10-2018 IPR002182 NB-ARC GO:0043531 Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-6798695|Reactome: R-HSA-6803207|Reactome: R-HSA-8953750 RAM_32615 01e504aee2c62a51b7d63c32898ecf7d 680 Gene3D G3DSA:3.40.50.300 25 179 7.1E-20 T 13-10-2018 RAM_32615 01e504aee2c62a51b7d63c32898ecf7d 680 SUPERFAMILY SSF52540 34 289 6.83E-20 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_32615 01e504aee2c62a51b7d63c32898ecf7d 680 SUPERFAMILY SSF48452 473 617 1.59E-17 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_15185 131d399acb8854f5104411c936f690cb 236 Pfam PF04248 Domain of unknown function (DUF427) 129 216 3.0E-27 T 13-10-2018 IPR007361 Domain of unknown function DUF427 RAM_15185 131d399acb8854f5104411c936f690cb 236 Pfam PF04248 Domain of unknown function (DUF427) 8 95 2.3E-16 T 13-10-2018 IPR007361 Domain of unknown function DUF427 RAM_15185 131d399acb8854f5104411c936f690cb 236 Gene3D G3DSA:2.170.150.40 1 100 1.5E-16 T 13-10-2018 RAM_15185 131d399acb8854f5104411c936f690cb 236 Gene3D G3DSA:2.170.150.40 115 223 6.7E-32 T 13-10-2018 RAM_37240 17874e3f49f21a27df8cedf8b8aecd93 338 Gene3D G3DSA:3.20.20.150 6 325 6.6E-98 T 13-10-2018 RAM_37240 17874e3f49f21a27df8cedf8b8aecd93 338 Pfam PF07582 AP endonuclease family 2 C terminus 280 334 1.6E-21 T 13-10-2018 IPR011418 AP endonuclease, family 2, C-terminal RAM_37240 17874e3f49f21a27df8cedf8b8aecd93 338 Pfam PF01261 Xylose isomerase-like TIM barrel 26 279 7.5E-36 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain RAM_37240 17874e3f49f21a27df8cedf8b8aecd93 338 SUPERFAMILY SSF51658 13 323 1.44E-57 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily RAM_04245 74c6d5c90872cbe7ddb46bee3be1cd38 126 PIRSF PIRSF016498 1 123 4.0E-21 T 13-10-2018 IPR018699 Protein of unknown function DUF2203 RAM_04245 74c6d5c90872cbe7ddb46bee3be1cd38 126 Pfam PF09969 Uncharacterized conserved protein (DUF2203) 3 119 3.1E-32 T 13-10-2018 IPR018699 Protein of unknown function DUF2203 RAM_36935 959d478358531e86a0e5da46d98b1ee9 371 Gene3D G3DSA:3.30.1540.10 219 306 8.2E-119 T 13-10-2018 RAM_36935 959d478358531e86a0e5da46d98b1ee9 371 Pfam PF02515 CoA-transferase family III 6 356 3.0E-91 T 13-10-2018 IPR003673 CoA-transferase family III GO:0003824 RAM_36935 959d478358531e86a0e5da46d98b1ee9 371 SUPERFAMILY SSF89796 4 368 8.11E-116 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily RAM_36935 959d478358531e86a0e5da46d98b1ee9 371 Gene3D G3DSA:3.40.50.10540 5 324 8.2E-119 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily RAM_33320 6c65dd5f2b82a7df81623d170c460661 301 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 2 298 15.801 T 13-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 RAM_33320 6c65dd5f2b82a7df81623d170c460661 301 Pfam PF02673 Bacitracin resistance protein BacA 7 292 2.6E-78 T 13-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 RAM_44055 b3b7d315c12e3757359e571c22316520 251 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 44 58 3.2E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_44055 b3b7d315c12e3757359e571c22316520 251 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 58 74 3.2E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_44055 b3b7d315c12e3757359e571c22316520 251 Pfam PF07702 UTRA domain 105 244 3.9E-45 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RAM_44055 b3b7d315c12e3757359e571c22316520 251 Pfam PF00392 Bacterial regulatory proteins, gntR family 36 83 1.6E-16 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_44055 b3b7d315c12e3757359e571c22316520 251 SMART SM00866 104 244 5.5E-46 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RAM_44055 b3b7d315c12e3757359e571c22316520 251 SUPERFAMILY SSF46785 20 89 4.63E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_44055 b3b7d315c12e3757359e571c22316520 251 SUPERFAMILY SSF64288 72 248 2.67E-54 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RAM_44055 b3b7d315c12e3757359e571c22316520 251 SMART SM00345 27 84 2.0E-12 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_44055 b3b7d315c12e3757359e571c22316520 251 Gene3D G3DSA:1.10.10.10 22 87 1.1E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_44055 b3b7d315c12e3757359e571c22316520 251 Gene3D G3DSA:3.40.1410.10 88 250 9.8E-61 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RAM_20505 e7b26b4faa4af6c02c630a70b8ff49f6 431 SUPERFAMILY SSF50621 261 417 2.51E-36 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 RAM_20505 e7b26b4faa4af6c02c630a70b8ff49f6 431 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 26 373 2.0E-15 T 13-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 RAM_20505 e7b26b4faa4af6c02c630a70b8ff49f6 431 Gene3D G3DSA:2.40.37.10 15 412 5.2E-113 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 RAM_20505 e7b26b4faa4af6c02c630a70b8ff49f6 431 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 50 68 4.5E-7 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RAM_20505 e7b26b4faa4af6c02c630a70b8ff49f6 431 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 269 288 4.5E-7 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RAM_20505 e7b26b4faa4af6c02c630a70b8ff49f6 431 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 182 195 4.5E-7 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RAM_20505 e7b26b4faa4af6c02c630a70b8ff49f6 431 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 39 279 3.9E-44 T 13-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 RAM_20505 e7b26b4faa4af6c02c630a70b8ff49f6 431 PRINTS PR01181 Diaminopimelate decarboxylase signature 384 406 8.8E-5 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RAM_20505 e7b26b4faa4af6c02c630a70b8ff49f6 431 PRINTS PR01181 Diaminopimelate decarboxylase signature 68 85 8.8E-5 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RAM_20505 e7b26b4faa4af6c02c630a70b8ff49f6 431 PRINTS PR01181 Diaminopimelate decarboxylase signature 156 165 8.8E-5 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RAM_20505 e7b26b4faa4af6c02c630a70b8ff49f6 431 PRINTS PR01181 Diaminopimelate decarboxylase signature 297 315 8.8E-5 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RAM_20505 e7b26b4faa4af6c02c630a70b8ff49f6 431 SUPERFAMILY SSF51419 20 280 3.79E-65 T 13-10-2018 IPR029066 PLP-binding barrel RAM_20505 e7b26b4faa4af6c02c630a70b8ff49f6 431 Gene3D G3DSA:3.20.20.10 28 281 5.2E-113 T 13-10-2018 IPR029066 PLP-binding barrel RAM_06135 9289b3d1e1fd2f29ff2ba31af52cafe5 289 Pfam PF02548 Ketopantoate hydroxymethyltransferase 26 282 5.7E-107 T 13-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 RAM_06135 9289b3d1e1fd2f29ff2ba31af52cafe5 289 PIRSF PIRSF000388 19 289 7.2E-107 T 13-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 RAM_06135 9289b3d1e1fd2f29ff2ba31af52cafe5 289 Gene3D G3DSA:3.20.20.60 24 287 2.6E-107 T 13-10-2018 RAM_06135 9289b3d1e1fd2f29ff2ba31af52cafe5 289 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 27 287 41.983 T 13-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 RAM_06135 9289b3d1e1fd2f29ff2ba31af52cafe5 289 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 27 288 5.6E-90 T 13-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 RAM_06135 9289b3d1e1fd2f29ff2ba31af52cafe5 289 SUPERFAMILY SSF51621 26 285 7.85E-101 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 RAM_45305 7f5fee99edcd4f94079c1f26f1b7cec6 227 Pfam PF00633 Helix-hairpin-helix motif 91 118 1.6E-9 T 13-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 RAM_45305 7f5fee99edcd4f94079c1f26f1b7cec6 227 SMART SM00478 30 177 2.7E-56 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 RAM_45305 7f5fee99edcd4f94079c1f26f1b7cec6 227 SUPERFAMILY SSF48150 5 199 6.44E-65 T 13-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 RAM_45305 7f5fee99edcd4f94079c1f26f1b7cec6 227 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 179 195 - T 13-10-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 RAM_45305 7f5fee99edcd4f94079c1f26f1b7cec6 227 ProSitePatterns PS01155 Endonuclease III family signature. 94 123 - T 13-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 RAM_45305 7f5fee99edcd4f94079c1f26f1b7cec6 227 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 26 160 2.3E-19 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 RAM_45305 7f5fee99edcd4f94079c1f26f1b7cec6 227 Gene3D G3DSA:1.10.340.30 13 124 1.1E-72 T 13-10-2018 RAM_45305 7f5fee99edcd4f94079c1f26f1b7cec6 227 PIRSF PIRSF001435 5 202 9.5E-46 T 13-10-2018 RAM_45305 7f5fee99edcd4f94079c1f26f1b7cec6 227 TIGRFAM TIGR01083 nth: endonuclease III 4 186 5.2E-79 T 13-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 RAM_45305 7f5fee99edcd4f94079c1f26f1b7cec6 227 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 179 195 2.4E-4 T 13-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 RAM_45305 7f5fee99edcd4f94079c1f26f1b7cec6 227 SMART SM00525 178 198 1.1E-5 T 13-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 RAM_45305 7f5fee99edcd4f94079c1f26f1b7cec6 227 Gene3D G3DSA:1.10.1670.10 8 195 1.1E-72 T 13-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 RAM_45305 7f5fee99edcd4f94079c1f26f1b7cec6 227 Hamap MF_00942 Endonuclease III [nth]. 1 201 36.346 T 13-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 RAM_10335 44d1c4af88be09f064ead681f2155813 392 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 1 388 40.42 T 13-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 RAM_10335 44d1c4af88be09f064ead681f2155813 392 SUPERFAMILY SSF69055 296 390 1.7E-24 T 13-10-2018 IPR036169 DXP reductoisomerase, C-terminal domain superfamily KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 RAM_10335 44d1c4af88be09f064ead681f2155813 392 SUPERFAMILY SSF55347 132 268 2.06E-52 T 13-10-2018 RAM_10335 44d1c4af88be09f064ead681f2155813 392 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 150 233 1.0E-35 T 13-10-2018 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 RAM_10335 44d1c4af88be09f064ead681f2155813 392 Gene3D G3DSA:1.10.1740.10 306 392 1.6E-27 T 13-10-2018 RAM_10335 44d1c4af88be09f064ead681f2155813 392 SUPERFAMILY SSF51735 1 154 1.77E-24 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_10335 44d1c4af88be09f064ead681f2155813 392 Pfam PF13288 DXP reductoisomerase C-terminal domain 266 383 6.1E-34 T 13-10-2018 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 RAM_10335 44d1c4af88be09f064ead681f2155813 392 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 138 1.2E-32 T 13-10-2018 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 RAM_10335 44d1c4af88be09f064ead681f2155813 392 PIRSF PIRSF006205 1 392 1.4E-131 T 13-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 RAM_10335 44d1c4af88be09f064ead681f2155813 392 Gene3D G3DSA:3.40.50.720 1 154 2.6E-39 T 13-10-2018 RAM_10335 44d1c4af88be09f064ead681f2155813 392 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 385 2.1E-105 T 13-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 RAM_15680 41b862a9dd94f08bb9badc30a7f3d4b3 223 SMART SM01001 89 221 3.1E-22 T 13-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 RAM_15680 41b862a9dd94f08bb9badc30a7f3d4b3 223 Pfam PF00731 AIR carboxylase 91 215 5.3E-12 T 13-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 RAM_15680 41b862a9dd94f08bb9badc30a7f3d4b3 223 SUPERFAMILY SSF52255 90 218 3.79E-22 T 13-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 RAM_15680 41b862a9dd94f08bb9badc30a7f3d4b3 223 Gene3D G3DSA:3.40.50.7700 90 221 3.0E-27 T 13-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 RAM_36045 efc1f3820bd26d14b5624d893e3f7501 210 ProSitePatterns PS00622 LuxR-type HTH domain signature. 164 191 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_36045 efc1f3820bd26d14b5624d893e3f7501 210 Gene3D G3DSA:3.40.50.12740 8 210 9.5E-58 T 13-10-2018 RAM_36045 efc1f3820bd26d14b5624d893e3f7501 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 192 2.9E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_36045 efc1f3820bd26d14b5624d893e3f7501 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 180 2.9E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_36045 efc1f3820bd26d14b5624d893e3f7501 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 164 2.9E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_36045 efc1f3820bd26d14b5624d893e3f7501 210 SUPERFAMILY SSF46894 143 209 1.67E-19 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_36045 efc1f3820bd26d14b5624d893e3f7501 210 SUPERFAMILY SSF52172 3 132 3.84E-29 T 13-10-2018 IPR011006 CheY-like superfamily RAM_36045 efc1f3820bd26d14b5624d893e3f7501 210 SMART SM00448 7 120 9.7E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_36045 efc1f3820bd26d14b5624d893e3f7501 210 SMART SM00421 147 204 3.1E-22 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_36045 efc1f3820bd26d14b5624d893e3f7501 210 Pfam PF00072 Response regulator receiver domain 9 120 4.0E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_36045 efc1f3820bd26d14b5624d893e3f7501 210 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 201 4.1E-18 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_37260 787ed5bef050a8ae32d3c7a23b3386e6 351 SUPERFAMILY SSF55347 145 288 2.13E-34 T 13-10-2018 RAM_37260 787ed5bef050a8ae32d3c7a23b3386e6 351 Gene3D G3DSA:3.40.50.720 19 138 3.1E-36 T 13-10-2018 RAM_37260 787ed5bef050a8ae32d3c7a23b3386e6 351 Gene3D G3DSA:3.30.360.10 139 344 1.4E-49 T 13-10-2018 RAM_37260 787ed5bef050a8ae32d3c7a23b3386e6 351 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 21 138 8.0E-26 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 RAM_37260 787ed5bef050a8ae32d3c7a23b3386e6 351 SUPERFAMILY SSF51735 11 168 3.43E-49 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_37020 00a055f41e5d7453c587032c8e86f5b4 278 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 8 263 3.7E-80 T 13-10-2018 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 RAM_37020 00a055f41e5d7453c587032c8e86f5b4 278 SUPERFAMILY SSF51717 4 266 1.96E-76 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_37020 00a055f41e5d7453c587032c8e86f5b4 278 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 8 23 - T 13-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_37020 00a055f41e5d7453c587032c8e86f5b4 278 Gene3D G3DSA:3.20.20.20 1 278 3.0E-86 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_37020 00a055f41e5d7453c587032c8e86f5b4 278 Pfam PF00809 Pterin binding enzyme 9 249 8.7E-64 T 13-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_37020 00a055f41e5d7453c587032c8e86f5b4 278 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 42 55 - T 13-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_01275 f58c70b3c0cb1729c563d3de8e20c328 266 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 85 90 - T 13-10-2018 IPR018114 Serine proteases, trypsin family, histidine active site GO:0004252|GO:0006508 RAM_01275 f58c70b3c0cb1729c563d3de8e20c328 266 Gene3D G3DSA:2.40.10.10 164 265 4.8E-8 T 13-10-2018 RAM_01275 f58c70b3c0cb1729c563d3de8e20c328 266 SUPERFAMILY SSF50494 24 240 3.53E-19 T 13-10-2018 IPR009003 Peptidase S1, PA clan RAM_01275 f58c70b3c0cb1729c563d3de8e20c328 266 Gene3D G3DSA:2.40.10.10 53 161 6.8E-28 T 13-10-2018 RAM_44135 14aca0e10b181ed1d6d569cfcb4e5ade 328 SUPERFAMILY SSF51735 118 263 1.57E-34 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_44135 14aca0e10b181ed1d6d569cfcb4e5ade 328 SMART SM00829 11 324 1.9E-23 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_44135 14aca0e10b181ed1d6d569cfcb4e5ade 328 Gene3D G3DSA:3.40.50.720 130 270 4.5E-83 T 13-10-2018 RAM_44135 14aca0e10b181ed1d6d569cfcb4e5ade 328 Gene3D G3DSA:3.90.180.10 11 323 4.5E-83 T 13-10-2018 RAM_44135 14aca0e10b181ed1d6d569cfcb4e5ade 328 Pfam PF13602 Zinc-binding dehydrogenase 191 324 2.0E-20 T 13-10-2018 RAM_44135 14aca0e10b181ed1d6d569cfcb4e5ade 328 SUPERFAMILY SSF50129 1 152 4.4E-32 T 13-10-2018 IPR011032 GroES-like superfamily RAM_44135 14aca0e10b181ed1d6d569cfcb4e5ade 328 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 90 1.9E-4 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_22755 57e79a2522b28e3b94aa3dfcb5a45e28 144 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 2 140 2.2E-13 T 13-10-2018 IPR019587 Polyketide cyclase/dehydrase RAM_22755 57e79a2522b28e3b94aa3dfcb5a45e28 144 Gene3D G3DSA:3.30.530.20 1 143 8.6E-18 T 13-10-2018 IPR023393 START-like domain superfamily RAM_22755 57e79a2522b28e3b94aa3dfcb5a45e28 144 SUPERFAMILY SSF55961 3 139 4.92E-17 T 13-10-2018 RAM_30640 d4c7a0b1bd7a10111ded046fed2d6823 311 SUPERFAMILY SSF51569 7 302 3.98E-56 T 13-10-2018 RAM_30640 d4c7a0b1bd7a10111ded046fed2d6823 311 SMART SM01130 7 303 9.1E-58 T 13-10-2018 IPR002220 DapA-like GO:0016829 RAM_30640 d4c7a0b1bd7a10111ded046fed2d6823 311 Gene3D G3DSA:3.20.20.70 3 305 5.4E-74 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_30640 d4c7a0b1bd7a10111ded046fed2d6823 311 PIRSF PIRSF001365 4 306 9.0E-49 T 13-10-2018 IPR002220 DapA-like GO:0016829 RAM_30640 d4c7a0b1bd7a10111ded046fed2d6823 311 Pfam PF00701 Dihydrodipicolinate synthetase family 8 301 2.6E-45 T 13-10-2018 IPR002220 DapA-like GO:0016829 RAM_30640 d4c7a0b1bd7a10111ded046fed2d6823 311 Hamap MF_00694 Probable 5-dehydro-4-deoxyglucarate dehydratase. 7 304 42.445 T 13-10-2018 IPR017655 5-dehydro-4-deoxyglucarate dehydratase GO:0016052|GO:0047448 KEGG: 00053+4.2.1.41|MetaCyc: PWY-6486|MetaCyc: PWY-6497|MetaCyc: PWY-6499|MetaCyc: PWY-6501 RAM_14135 1f62032f6f4a27551b8ebe90a2e3acd3 330 Pfam PF02650 WhiA C-terminal HTH domain 222 304 5.5E-19 T 13-10-2018 IPR023054 Sporulation regulator WhiA, C-terminal RAM_14135 1f62032f6f4a27551b8ebe90a2e3acd3 330 Hamap MF_01420 Putative sporulation transcription regulator WhiA [whiA]. 3 307 28.479 T 13-10-2018 IPR003802 Sporulation regulator WhiA GO:0043937 RAM_14135 1f62032f6f4a27551b8ebe90a2e3acd3 330 Gene3D G3DSA:3.10.28.10 1 215 1.9E-17 T 13-10-2018 IPR027434 Homing endonuclease RAM_14135 1f62032f6f4a27551b8ebe90a2e3acd3 330 Pfam PF10298 WhiA N-terminal LAGLIDADG-like domain 22 105 4.0E-23 T 13-10-2018 IPR018478 Sporulation transcription regulator WhiA, N-terminal domain RAM_14135 1f62032f6f4a27551b8ebe90a2e3acd3 330 TIGRFAM TIGR00647 DNA_bind_WhiA: DNA-binding protein WhiA 4 305 2.9E-102 T 13-10-2018 IPR033981 Sporulation regulator WhiA-like RAM_14135 1f62032f6f4a27551b8ebe90a2e3acd3 330 Gene3D G3DSA:1.10.10.10 217 308 5.6E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_14135 1f62032f6f4a27551b8ebe90a2e3acd3 330 Pfam PF14527 WhiA LAGLIDADG-like domain 128 219 2.1E-24 T 13-10-2018 IPR039518 WhiA, LAGLIDADG-like domain RAM_37940 8e41c6a49ab584ca387375005bb6eae7 363 Pfam PF08338 Domain of unknown function (DUF1731) 299 347 8.0E-14 T 13-10-2018 IPR013549 Domain of unknown function DUF1731 RAM_37940 8e41c6a49ab584ca387375005bb6eae7 363 Pfam PF01370 NAD dependent epimerase/dehydratase family 57 263 2.1E-11 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 RAM_37940 8e41c6a49ab584ca387375005bb6eae7 363 TIGRFAM TIGR01777 yfcH: TIGR01777 family protein 56 344 1.0E-83 T 13-10-2018 IPR010099 Epimerase family protein SDR39U1 RAM_37940 8e41c6a49ab584ca387375005bb6eae7 363 SUPERFAMILY SSF51735 51 303 2.78E-34 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_37940 8e41c6a49ab584ca387375005bb6eae7 363 Gene3D G3DSA:3.40.50.720 50 338 1.2E-79 T 13-10-2018 RAM_07850 34890ac6d00256a5eee73651fb5c2f43 500 SUPERFAMILY SSF52540 75 357 1.59E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_07850 34890ac6d00256a5eee73651fb5c2f43 500 SMART SM00490 257 338 2.9E-25 T 13-10-2018 IPR001650 Helicase, C-terminal RAM_07850 34890ac6d00256a5eee73651fb5c2f43 500 Gene3D G3DSA:3.40.50.300 1 211 2.6E-69 T 13-10-2018 RAM_07850 34890ac6d00256a5eee73651fb5c2f43 500 Pfam PF00270 DEAD/DEAH box helicase 26 194 1.7E-43 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RAM_07850 34890ac6d00256a5eee73651fb5c2f43 500 SMART SM00487 21 223 3.8E-52 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RAM_07850 34890ac6d00256a5eee73651fb5c2f43 500 Pfam PF00271 Helicase conserved C-terminal domain 236 338 1.2E-23 T 13-10-2018 IPR001650 Helicase, C-terminal RAM_07850 34890ac6d00256a5eee73651fb5c2f43 500 Gene3D G3DSA:3.40.50.300 218 374 1.4E-40 T 13-10-2018 RAM_41860 340a7bea9c4bb09994e0366e3d963fff 808 Pfam PF13424 Tetratricopeptide repeat 635 707 9.1E-15 T 13-10-2018 RAM_41860 340a7bea9c4bb09994e0366e3d963fff 808 Gene3D G3DSA:3.40.50.300 109 267 2.7E-22 T 13-10-2018 RAM_41860 340a7bea9c4bb09994e0366e3d963fff 808 SUPERFAMILY SSF48452 559 785 1.01E-16 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_41860 340a7bea9c4bb09994e0366e3d963fff 808 SUPERFAMILY SSF52540 115 376 1.53E-22 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_41860 340a7bea9c4bb09994e0366e3d963fff 808 PRINTS PR00364 Disease resistance protein signature 226 240 5.3E-6 T 13-10-2018 RAM_41860 340a7bea9c4bb09994e0366e3d963fff 808 PRINTS PR00364 Disease resistance protein signature 311 325 5.3E-6 T 13-10-2018 RAM_41860 340a7bea9c4bb09994e0366e3d963fff 808 PRINTS PR00364 Disease resistance protein signature 144 159 5.3E-6 T 13-10-2018 RAM_41860 340a7bea9c4bb09994e0366e3d963fff 808 SMART SM00028 555 588 240.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_41860 340a7bea9c4bb09994e0366e3d963fff 808 SMART SM00028 755 788 24.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_41860 340a7bea9c4bb09994e0366e3d963fff 808 SMART SM00028 595 628 150.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_41860 340a7bea9c4bb09994e0366e3d963fff 808 SMART SM00028 715 748 56.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_41860 340a7bea9c4bb09994e0366e3d963fff 808 SMART SM00028 635 668 0.081 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_41860 340a7bea9c4bb09994e0366e3d963fff 808 SMART SM00028 675 708 1.6 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_41860 340a7bea9c4bb09994e0366e3d963fff 808 Gene3D G3DSA:1.25.40.10 520 797 4.8E-49 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_41860 340a7bea9c4bb09994e0366e3d963fff 808 Pfam PF00931 NB-ARC domain 229 380 2.8E-6 T 13-10-2018 IPR002182 NB-ARC GO:0043531 Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-6798695|Reactome: R-HSA-6803207|Reactome: R-HSA-8953750 RAM_10285 7a8cc5b0302fe531cbd5bfea0fabfe9a 301 Gene3D G3DSA:3.40.190.10 103 288 1.4E-25 T 13-10-2018 RAM_10285 7a8cc5b0302fe531cbd5bfea0fabfe9a 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 1.3E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_10285 7a8cc5b0302fe531cbd5bfea0fabfe9a 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 1.3E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_10285 7a8cc5b0302fe531cbd5bfea0fabfe9a 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 1.3E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_10285 7a8cc5b0302fe531cbd5bfea0fabfe9a 301 Gene3D G3DSA:3.40.190.10 162 270 1.4E-25 T 13-10-2018 RAM_10285 7a8cc5b0302fe531cbd5bfea0fabfe9a 301 Gene3D G3DSA:1.10.10.10 5 94 6.2E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_10285 7a8cc5b0302fe531cbd5bfea0fabfe9a 301 SUPERFAMILY SSF46785 3 115 5.71E-25 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_10285 7a8cc5b0302fe531cbd5bfea0fabfe9a 301 SUPERFAMILY SSF53850 95 296 9.87E-21 T 13-10-2018 RAM_10285 7a8cc5b0302fe531cbd5bfea0fabfe9a 301 Pfam PF03466 LysR substrate binding domain 93 294 8.7E-23 T 13-10-2018 IPR005119 LysR, substrate-binding RAM_10285 7a8cc5b0302fe531cbd5bfea0fabfe9a 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 2.2E-21 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_19215 174bfd5ef3d382ddc1f1a1d2193e7936 345 Gene3D G3DSA:1.10.10.10 281 345 2.0E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_19215 174bfd5ef3d382ddc1f1a1d2193e7936 345 Pfam PF12146 Serine aminopeptidase, S33 59 239 1.3E-10 T 13-10-2018 IPR022742 Serine aminopeptidase, S33 RAM_19215 174bfd5ef3d382ddc1f1a1d2193e7936 345 Pfam PF00196 Bacterial regulatory proteins, luxR family 284 339 1.3E-16 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_19215 174bfd5ef3d382ddc1f1a1d2193e7936 345 Gene3D G3DSA:3.40.50.1820 16 270 2.0E-40 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_19215 174bfd5ef3d382ddc1f1a1d2193e7936 345 PRINTS PR00111 Alpha/beta hydrolase fold signature 59 74 5.4E-13 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_19215 174bfd5ef3d382ddc1f1a1d2193e7936 345 PRINTS PR00111 Alpha/beta hydrolase fold signature 215 229 5.4E-13 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_19215 174bfd5ef3d382ddc1f1a1d2193e7936 345 PRINTS PR00111 Alpha/beta hydrolase fold signature 103 116 5.4E-13 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_19215 174bfd5ef3d382ddc1f1a1d2193e7936 345 PRINTS PR00111 Alpha/beta hydrolase fold signature 117 130 5.4E-13 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_19215 174bfd5ef3d382ddc1f1a1d2193e7936 345 SUPERFAMILY SSF53474 15 269 1.88E-43 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_19215 174bfd5ef3d382ddc1f1a1d2193e7936 345 SMART SM00421 282 339 7.3E-22 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_19215 174bfd5ef3d382ddc1f1a1d2193e7936 345 SUPERFAMILY SSF46894 280 344 2.21E-19 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_19215 174bfd5ef3d382ddc1f1a1d2193e7936 345 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 315 327 1.2E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_19215 174bfd5ef3d382ddc1f1a1d2193e7936 345 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 299 315 1.2E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_19215 174bfd5ef3d382ddc1f1a1d2193e7936 345 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 285 299 1.2E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_23000 63a26e2f666a6c0b6ba5bb9da94e6b31 67 SUPERFAMILY SSF50249 1 66 3.21E-25 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_23000 63a26e2f666a6c0b6ba5bb9da94e6b31 67 SMART SM00357 3 67 1.0E-28 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 RAM_23000 63a26e2f666a6c0b6ba5bb9da94e6b31 67 PIRSF PIRSF002599 1 67 5.5E-25 T 13-10-2018 IPR012156 Cold shock, CspA GO:0003676 RAM_23000 63a26e2f666a6c0b6ba5bb9da94e6b31 67 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 13-10-2018 IPR019844 Cold-shock conserved site RAM_23000 63a26e2f666a6c0b6ba5bb9da94e6b31 67 Pfam PF00313 'Cold-shock' DNA-binding domain 3 66 2.0E-30 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RAM_23000 63a26e2f666a6c0b6ba5bb9da94e6b31 67 PRINTS PR00050 Cold shock protein signature 4 19 4.9E-18 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RAM_23000 63a26e2f666a6c0b6ba5bb9da94e6b31 67 PRINTS PR00050 Cold shock protein signature 25 34 4.9E-18 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RAM_23000 63a26e2f666a6c0b6ba5bb9da94e6b31 67 PRINTS PR00050 Cold shock protein signature 40 58 4.9E-18 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RAM_23000 63a26e2f666a6c0b6ba5bb9da94e6b31 67 Gene3D G3DSA:2.40.50.140 1 65 1.0E-29 T 13-10-2018 RAM_27800 5c7f60cf7ff9ecf9498b48a751656e99 1605 Gene3D G3DSA:3.90.930.1 801 948 1.5E-10 T 13-10-2018 RAM_27800 5c7f60cf7ff9ecf9498b48a751656e99 1605 Gene3D G3DSA:3.90.930.1 548 688 7.4E-7 T 13-10-2018 RAM_27800 5c7f60cf7ff9ecf9498b48a751656e99 1605 Gene3D G3DSA:2.180.10.10 1046 1312 4.8E-29 T 13-10-2018 RAM_27800 5c7f60cf7ff9ecf9498b48a751656e99 1605 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 1242 1312 2.9E-20 T 13-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 RAM_27800 5c7f60cf7ff9ecf9498b48a751656e99 1605 Gene3D G3DSA:1.20.1260.20 58 149 4.1E-5 T 13-10-2018 IPR038332 PPE superfamily RAM_27800 5c7f60cf7ff9ecf9498b48a751656e99 1605 Pfam PF05593 RHS Repeat 857 893 2.8E-6 T 13-10-2018 IPR031325 RHS repeat RAM_27800 5c7f60cf7ff9ecf9498b48a751656e99 1605 Pfam PF05593 RHS Repeat 1120 1149 4.0E-7 T 13-10-2018 IPR031325 RHS repeat RAM_27800 5c7f60cf7ff9ecf9498b48a751656e99 1605 Pfam PF05593 RHS Repeat 879 912 5.9E-5 T 13-10-2018 IPR031325 RHS repeat RAM_27800 5c7f60cf7ff9ecf9498b48a751656e99 1605 Pfam PF05593 RHS Repeat 820 852 1.6E-8 T 13-10-2018 IPR031325 RHS repeat RAM_27800 5c7f60cf7ff9ecf9498b48a751656e99 1605 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1120 1154 2.4E-7 T 13-10-2018 IPR006530 YD repeat RAM_27800 5c7f60cf7ff9ecf9498b48a751656e99 1605 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 898 936 6.3E-5 T 13-10-2018 IPR006530 YD repeat RAM_27800 5c7f60cf7ff9ecf9498b48a751656e99 1605 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 817 855 4.3E-9 T 13-10-2018 IPR006530 YD repeat RAM_27800 5c7f60cf7ff9ecf9498b48a751656e99 1605 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 755 793 0.0012 T 13-10-2018 IPR006530 YD repeat RAM_27800 5c7f60cf7ff9ecf9498b48a751656e99 1605 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 857 892 1.7E-5 T 13-10-2018 IPR006530 YD repeat RAM_27800 5c7f60cf7ff9ecf9498b48a751656e99 1605 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 552 581 0.0014 T 13-10-2018 IPR006530 YD repeat RAM_27800 5c7f60cf7ff9ecf9498b48a751656e99 1605 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 978 1016 0.0011 T 13-10-2018 IPR006530 YD repeat RAM_27800 5c7f60cf7ff9ecf9498b48a751656e99 1605 SUPERFAMILY SSF140453 58 120 3.66E-5 T 13-10-2018 IPR036689 ESAT-6-like superfamily RAM_27800 5c7f60cf7ff9ecf9498b48a751656e99 1605 PRINTS PR00394 RHS protein signature 1280 1299 5.9E-8 T 13-10-2018 IPR001826 RHS protein RAM_27800 5c7f60cf7ff9ecf9498b48a751656e99 1605 PRINTS PR00394 RHS protein signature 1257 1277 5.9E-8 T 13-10-2018 IPR001826 RHS protein RAM_33395 f3a8da2039c06728d02e07ba4da602c9 281 Pfam PF05368 NmrA-like family 5 215 2.0E-21 T 13-10-2018 IPR008030 NmrA-like domain Reactome: R-HSA-70635 RAM_33395 f3a8da2039c06728d02e07ba4da602c9 281 Gene3D G3DSA:3.40.50.720 8 262 2.9E-70 T 13-10-2018 RAM_33395 f3a8da2039c06728d02e07ba4da602c9 281 SUPERFAMILY SSF51735 9 250 9.07E-48 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_33395 f3a8da2039c06728d02e07ba4da602c9 281 Gene3D G3DSA:3.90.25.10 131 264 2.9E-70 T 13-10-2018 RAM_18125 cc8d93828d2e797c2b6407c79be74ac6 272 Gene3D G3DSA:3.40.50.720 3 249 4.0E-53 T 13-10-2018 RAM_18125 cc8d93828d2e797c2b6407c79be74ac6 272 Pfam PF00106 short chain dehydrogenase 11 195 7.1E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18125 cc8d93828d2e797c2b6407c79be74ac6 272 PIRSF PIRSF000126 1 265 5.3E-59 T 13-10-2018 RAM_18125 cc8d93828d2e797c2b6407c79be74ac6 272 SUPERFAMILY SSF51735 8 256 1.99E-48 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_18125 cc8d93828d2e797c2b6407c79be74ac6 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 1.4E-15 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18125 cc8d93828d2e797c2b6407c79be74ac6 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 1.4E-15 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18125 cc8d93828d2e797c2b6407c79be74ac6 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 1.4E-15 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18125 cc8d93828d2e797c2b6407c79be74ac6 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 1.4E-15 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18125 cc8d93828d2e797c2b6407c79be74ac6 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 1.4E-15 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_13935 af3674bd2cea59d79b5bd1ed9ee87ca4 187 Pfam PF01132 Elongation factor P (EF-P) OB domain 68 121 3.9E-23 T 13-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 RAM_13935 af3674bd2cea59d79b5bd1ed9ee87ca4 187 Pfam PF09285 Elongation factor P, C-terminal 129 184 1.3E-23 T 13-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 RAM_13935 af3674bd2cea59d79b5bd1ed9ee87ca4 187 Gene3D G3DSA:2.30.30.30 1 62 3.7E-26 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 RAM_13935 af3674bd2cea59d79b5bd1ed9ee87ca4 187 SUPERFAMILY SSF50249 129 185 6.34E-17 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_13935 af3674bd2cea59d79b5bd1ed9ee87ca4 187 SMART SM00841 129 184 1.8E-30 T 13-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 RAM_13935 af3674bd2cea59d79b5bd1ed9ee87ca4 187 SMART SM01185 67 121 9.9E-29 T 13-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 RAM_13935 af3674bd2cea59d79b5bd1ed9ee87ca4 187 TIGRFAM TIGR00038 efp: translation elongation factor P 3 185 4.4E-77 T 13-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 RAM_13935 af3674bd2cea59d79b5bd1ed9ee87ca4 187 PIRSF PIRSF005901 1 186 6.9E-68 T 13-10-2018 IPR020599 Translation elongation factor P/YeiP RAM_13935 af3674bd2cea59d79b5bd1ed9ee87ca4 187 SUPERFAMILY SSF50104 2 63 4.45E-19 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily RAM_13935 af3674bd2cea59d79b5bd1ed9ee87ca4 187 ProSitePatterns PS01275 Elongation factor P signature. 150 169 - T 13-10-2018 IPR013852 Translation elongation factor P/YeiP, conserved site RAM_13935 af3674bd2cea59d79b5bd1ed9ee87ca4 187 Gene3D G3DSA:2.40.50.140 64 127 3.3E-25 T 13-10-2018 RAM_13935 af3674bd2cea59d79b5bd1ed9ee87ca4 187 Hamap MF_00141 Elongation factor P [efp]. 1 185 49.358 T 13-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 RAM_13935 af3674bd2cea59d79b5bd1ed9ee87ca4 187 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 3 60 3.5E-25 T 13-10-2018 IPR013185 Translation elongation factor, KOW-like RAM_13935 af3674bd2cea59d79b5bd1ed9ee87ca4 187 SUPERFAMILY SSF50249 65 127 1.67E-19 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_13935 af3674bd2cea59d79b5bd1ed9ee87ca4 187 Gene3D G3DSA:2.40.50.140 128 187 2.3E-24 T 13-10-2018 RAM_05275 9b60e99f0363ad137b394db249917a28 714 SUPERFAMILY SSF55486 171 482 1.83E-59 T 13-10-2018 RAM_05275 9b60e99f0363ad137b394db249917a28 714 Pfam PF02868 Thermolysin metallopeptidase, alpha-helical domain 320 482 2.0E-34 T 13-10-2018 IPR001570 Peptidase M4, C-terminal GO:0004222 RAM_05275 9b60e99f0363ad137b394db249917a28 714 Pfam PF03413 Peptidase propeptide and YPEB domain 85 150 6.3E-6 T 13-10-2018 IPR025711 PepSY domain RAM_05275 9b60e99f0363ad137b394db249917a28 714 SUPERFAMILY SSF49785 611 714 5.95E-20 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_05275 9b60e99f0363ad137b394db249917a28 714 Pfam PF01483 Proprotein convertase P-domain 635 713 8.7E-18 T 13-10-2018 IPR002884 P domain GO:0004252|GO:0006508 RAM_05275 9b60e99f0363ad137b394db249917a28 714 Pfam PF01447 Thermolysin metallopeptidase, catalytic domain 174 310 1.2E-27 T 13-10-2018 IPR013856 Peptidase M4 domain GO:0004222 RAM_05275 9b60e99f0363ad137b394db249917a28 714 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 267 287 3.0E-6 T 13-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 RAM_05275 9b60e99f0363ad137b394db249917a28 714 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 388 404 3.0E-6 T 13-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 RAM_05275 9b60e99f0363ad137b394db249917a28 714 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 323 334 3.0E-6 T 13-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 RAM_05275 9b60e99f0363ad137b394db249917a28 714 Gene3D G3DSA:2.60.120.260 593 714 8.5E-10 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_05275 9b60e99f0363ad137b394db249917a28 714 Gene3D G3DSA:1.10.390.10 319 482 6.4E-40 T 13-10-2018 IPR027268 Peptidase M4/M1, CTD superfamily RAM_05275 9b60e99f0363ad137b394db249917a28 714 Gene3D G3DSA:3.10.170.10 172 313 1.5E-24 T 13-10-2018 RAM_02895 f5e2e2e5bdd34b7de7741f6873ff3af7 426 Pfam PF16221 winged helix-turn-helix 350 425 1.7E-31 T 13-10-2018 IPR032622 UCP01524, winged helix-turn-helix domain RAM_02895 f5e2e2e5bdd34b7de7741f6873ff3af7 426 Gene3D G3DSA:3.50.30.90 61 157 3.0E-133 T 13-10-2018 RAM_02895 f5e2e2e5bdd34b7de7741f6873ff3af7 426 Pfam PF09940 Domain of unknown function (DUF2172) 63 154 4.2E-39 T 13-10-2018 IPR032610 Domain of unknown function DUF2172 RAM_02895 f5e2e2e5bdd34b7de7741f6873ff3af7 426 SUPERFAMILY SSF53187 87 348 5.11E-35 T 13-10-2018 RAM_02895 f5e2e2e5bdd34b7de7741f6873ff3af7 426 Pfam PF16254 Domain of unknown function (DUF4910) 13 348 7.1E-113 T 13-10-2018 IPR032589 Domain of unknown function DUF4910 RAM_02895 f5e2e2e5bdd34b7de7741f6873ff3af7 426 PIRSF PIRSF015244 3 426 2.0E-207 T 13-10-2018 IPR012353 Uncharacterised conserved protein UCP01524, polysaccharide biosynthesis aminopeptidase-like RAM_02895 f5e2e2e5bdd34b7de7741f6873ff3af7 426 Gene3D G3DSA:1.10.10.10 349 426 7.0E-34 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_02895 f5e2e2e5bdd34b7de7741f6873ff3af7 426 Gene3D G3DSA:3.40.630.10 15 333 3.0E-133 T 13-10-2018 RAM_24310 5dfb91a9ce2cd0e5b787ea7e6ba0765d 1008 Gene3D G3DSA:1.10.10.10 1 96 4.4E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_24310 5dfb91a9ce2cd0e5b787ea7e6ba0765d 1008 PRINTS PR00364 Disease resistance protein signature 465 479 6.1E-7 T 13-10-2018 RAM_24310 5dfb91a9ce2cd0e5b787ea7e6ba0765d 1008 PRINTS PR00364 Disease resistance protein signature 357 371 6.1E-7 T 13-10-2018 RAM_24310 5dfb91a9ce2cd0e5b787ea7e6ba0765d 1008 PRINTS PR00364 Disease resistance protein signature 288 303 6.1E-7 T 13-10-2018 RAM_24310 5dfb91a9ce2cd0e5b787ea7e6ba0765d 1008 SUPERFAMILY SSF52540 262 528 6.46E-18 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_24310 5dfb91a9ce2cd0e5b787ea7e6ba0765d 1008 SUPERFAMILY SSF48452 719 918 2.58E-13 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_24310 5dfb91a9ce2cd0e5b787ea7e6ba0765d 1008 SMART SM00862 17 93 1.2E-7 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_24310 5dfb91a9ce2cd0e5b787ea7e6ba0765d 1008 SUPERFAMILY SSF46894 2 93 1.22E-11 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_24310 5dfb91a9ce2cd0e5b787ea7e6ba0765d 1008 SUPERFAMILY SSF48452 96 256 6.07E-30 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_24310 5dfb91a9ce2cd0e5b787ea7e6ba0765d 1008 Gene3D G3DSA:1.25.40.10 697 955 1.2E-16 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_24310 5dfb91a9ce2cd0e5b787ea7e6ba0765d 1008 Pfam PF00486 Transcriptional regulatory protein, C terminal 26 76 4.2E-5 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_24310 5dfb91a9ce2cd0e5b787ea7e6ba0765d 1008 SMART SM01043 100 244 3.3E-40 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_24310 5dfb91a9ce2cd0e5b787ea7e6ba0765d 1008 Gene3D G3DSA:1.25.40.10 98 270 2.5E-42 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_24310 5dfb91a9ce2cd0e5b787ea7e6ba0765d 1008 Pfam PF03704 Bacterial transcriptional activator domain 100 244 3.9E-35 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_10995 5e5ba1af7728d75d5556752041774727 215 Pfam PF09335 SNARE associated Golgi protein 42 163 2.7E-18 T 13-10-2018 IPR032816 SNARE associated Golgi protein RAM_09885 04378446d7b2d98baef754ee7fba1ac7 195 SUPERFAMILY SSF46689 5 79 1.23E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_09885 04378446d7b2d98baef754ee7fba1ac7 195 Gene3D G3DSA:1.10.10.60 1 65 1.6E-20 T 13-10-2018 RAM_09885 04378446d7b2d98baef754ee7fba1ac7 195 Pfam PF13977 BetI-type transcriptional repressor, C-terminal 109 187 1.8E-6 T 13-10-2018 IPR039538 BetI-type transcriptional repressor, C-terminal RAM_09885 04378446d7b2d98baef754ee7fba1ac7 195 SUPERFAMILY SSF48498 79 192 3.5E-27 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_09885 04378446d7b2d98baef754ee7fba1ac7 195 Gene3D G3DSA:1.10.357.10 66 194 1.9E-29 T 13-10-2018 RAM_09885 04378446d7b2d98baef754ee7fba1ac7 195 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 55 3.1E-12 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_45465 0ad76213267aa3d65c431df85cd7fa90 346 SUPERFAMILY SSF55729 169 335 8.49E-9 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_45465 0ad76213267aa3d65c431df85cd7fa90 346 Pfam PF13480 Acetyltransferase (GNAT) domain 180 324 7.9E-7 T 13-10-2018 IPR038740 BioF2-like, acetyltransferase domain KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 RAM_34780 e3632bc149b94ca91f1bc4c0af261da5 279 Pfam PF04672 S-adenosyl methyltransferase 14 279 6.1E-83 T 13-10-2018 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type RAM_34780 e3632bc149b94ca91f1bc4c0af261da5 279 Gene3D G3DSA:3.40.50.150 8 279 6.9E-95 T 13-10-2018 RAM_34780 e3632bc149b94ca91f1bc4c0af261da5 279 PIRSF PIRSF017393 5 279 1.5E-89 T 13-10-2018 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type RAM_34780 e3632bc149b94ca91f1bc4c0af261da5 279 SUPERFAMILY SSF53335 16 265 1.67E-39 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_45195 35f6f86624706b7ad4a56b953ff6111e 585 Gene3D G3DSA:3.40.50.1700 404 585 2.5E-33 T 13-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 RAM_45195 35f6f86624706b7ad4a56b953ff6111e 585 Gene3D G3DSA:3.20.20.300 20 399 2.1E-120 T 13-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 RAM_45195 35f6f86624706b7ad4a56b953ff6111e 585 SUPERFAMILY SSF51445 17 415 2.84E-99 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_45195 35f6f86624706b7ad4a56b953ff6111e 585 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 36 379 1.2E-99 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_45195 35f6f86624706b7ad4a56b953ff6111e 585 SUPERFAMILY SSF52279 420 585 6.41E-16 T 13-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 RAM_45195 35f6f86624706b7ad4a56b953ff6111e 585 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 421 585 1.5E-11 T 13-10-2018 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 RAM_08675 5c9085537edbdc4f1812fa2c06610900 485 SUPERFAMILY SSF51905 5 375 1.01E-27 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_08675 5c9085537edbdc4f1812fa2c06610900 485 Gene3D G3DSA:3.50.50.60 5 423 4.6E-23 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_09295 7a6ced164dac1df5a69bea255cfe8a43 247 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 3 14 2.4E-7 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_09295 7a6ced164dac1df5a69bea255cfe8a43 247 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 38 58 2.4E-7 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_09295 7a6ced164dac1df5a69bea255cfe8a43 247 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 14 27 2.4E-7 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_09295 7a6ced164dac1df5a69bea255cfe8a43 247 Pfam PF13411 MerR HTH family regulatory protein 3 67 2.8E-14 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_09295 7a6ced164dac1df5a69bea255cfe8a43 247 SUPERFAMILY SSF46955 2 103 3.59E-22 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily RAM_09295 7a6ced164dac1df5a69bea255cfe8a43 247 SMART SM00422 2 71 5.2E-17 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_09295 7a6ced164dac1df5a69bea255cfe8a43 247 Gene3D G3DSA:1.10.1660.10 1 108 8.1E-22 T 13-10-2018 RAM_25825 53bf494dd13f84646e5be5bfc666449a 386 SUPERFAMILY SSF54826 11 142 9.48E-24 T 13-10-2018 RAM_25825 53bf494dd13f84646e5be5bfc666449a 386 SUPERFAMILY SSF51604 141 383 2.36E-58 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RAM_25825 53bf494dd13f84646e5be5bfc666449a 386 Pfam PF13378 Enolase C-terminal domain-like 169 376 5.4E-51 T 13-10-2018 IPR029065 Enolase C-terminal domain-like RAM_25825 53bf494dd13f84646e5be5bfc666449a 386 Gene3D G3DSA:3.30.390.10 6 137 1.5E-31 T 13-10-2018 IPR029017 Enolase-like, N-terminal RAM_25825 53bf494dd13f84646e5be5bfc666449a 386 Gene3D G3DSA:3.20.20.120 138 385 6.4E-63 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RAM_25825 53bf494dd13f84646e5be5bfc666449a 386 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 46 142 8.2E-16 T 13-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain RAM_25825 53bf494dd13f84646e5be5bfc666449a 386 SMART SM00922 160 256 9.7E-20 T 13-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal RAM_15930 d6d436133da8344f8a13994e05c674b1 368 ProSitePatterns PS00455 Putative AMP-binding domain signature. 2 13 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_15930 d6d436133da8344f8a13994e05c674b1 368 Pfam PF00501 AMP-binding enzyme 2 273 3.1E-56 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_15930 d6d436133da8344f8a13994e05c674b1 368 Pfam PF13193 AMP-binding enzyme C-terminal domain 283 358 2.8E-24 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_15930 d6d436133da8344f8a13994e05c674b1 368 SUPERFAMILY SSF56801 2 367 1.7E-107 T 13-10-2018 RAM_15930 d6d436133da8344f8a13994e05c674b1 368 Gene3D G3DSA:3.40.50.12780 1 270 5.2E-68 T 13-10-2018 RAM_15930 d6d436133da8344f8a13994e05c674b1 368 Gene3D G3DSA:3.30.300.310 271 368 1.3E-33 T 13-10-2018 RAM_17160 c271913a03c1809e1764ac93f8a622f9 245 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 25 38 9.5E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_17160 c271913a03c1809e1764ac93f8a622f9 245 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 46 69 9.5E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_17160 c271913a03c1809e1764ac93f8a622f9 245 SUPERFAMILY SSF46689 14 90 3.33E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_17160 c271913a03c1809e1764ac93f8a622f9 245 Gene3D G3DSA:1.10.357.10 8 209 1.1E-34 T 13-10-2018 RAM_17160 c271913a03c1809e1764ac93f8a622f9 245 ProSitePatterns PS01081 TetR-type HTH domain signature. 37 67 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RAM_17160 c271913a03c1809e1764ac93f8a622f9 245 SUPERFAMILY SSF48498 96 206 2.89E-5 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_17160 c271913a03c1809e1764ac93f8a622f9 245 Pfam PF00440 Bacterial regulatory proteins, tetR family 25 69 4.3E-16 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_20515 e92a0dc24e79e46f9ef1c0dbb8d5ad86 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 165 181 3.7E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_20515 e92a0dc24e79e46f9ef1c0dbb8d5ad86 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 181 193 3.7E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_20515 e92a0dc24e79e46f9ef1c0dbb8d5ad86 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 151 165 3.7E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_20515 e92a0dc24e79e46f9ef1c0dbb8d5ad86 214 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 197 1.2E-15 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_20515 e92a0dc24e79e46f9ef1c0dbb8d5ad86 214 SMART SM00448 1 120 1.7E-6 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_20515 e92a0dc24e79e46f9ef1c0dbb8d5ad86 214 Pfam PF00072 Response regulator receiver domain 3 108 7.6E-11 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_20515 e92a0dc24e79e46f9ef1c0dbb8d5ad86 214 SUPERFAMILY SSF46894 132 204 1.29E-16 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_20515 e92a0dc24e79e46f9ef1c0dbb8d5ad86 214 SUPERFAMILY SSF52172 2 179 7.54E-16 T 13-10-2018 IPR011006 CheY-like superfamily RAM_20515 e92a0dc24e79e46f9ef1c0dbb8d5ad86 214 Gene3D G3DSA:3.40.50.12740 1 211 3.3E-44 T 13-10-2018 RAM_20515 e92a0dc24e79e46f9ef1c0dbb8d5ad86 214 SMART SM00421 148 210 1.6E-15 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_39625 760a7327bb8525f196cbe4f8bf9b4ec1 90 Gene3D G3DSA:3.10.20.30 1 90 2.7E-28 T 13-10-2018 IPR012675 Beta-grasp domain superfamily RAM_39625 760a7327bb8525f196cbe4f8bf9b4ec1 90 SUPERFAMILY SSF54285 1 90 1.19E-23 T 13-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp RAM_39625 760a7327bb8525f196cbe4f8bf9b4ec1 90 Pfam PF02597 ThiS family 5 90 1.0E-18 T 13-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 RAM_26405 dd16ea6031714194815654fe08c20ac3 266 Pfam PF03756 A-factor biosynthesis hotdog domain 109 241 1.8E-17 T 13-10-2018 IPR005509 A-factor biosynthesis hotdog domain RAM_28745 e2148eb42d5e4fae7cde5520e5102855 223 Pfam PF14099 Polysaccharide lyase 71 206 7.3E-9 T 13-10-2018 IPR025975 Polysaccharide lyase MetaCyc: PWY-7644 RAM_28745 e2148eb42d5e4fae7cde5520e5102855 223 Gene3D G3DSA:2.60.120.200 24 223 3.4E-16 T 13-10-2018 RAM_46175 ee433bf79362f53e778a9fca40f34602 221 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 4 211 1.2E-55 T 13-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 RAM_46175 ee433bf79362f53e778a9fca40f34602 221 Gene3D G3DSA:1.20.58.220 1 213 6.6E-60 T 13-10-2018 IPR038078 PhoU-like domain superfamily RAM_46175 ee433bf79362f53e778a9fca40f34602 221 SUPERFAMILY SSF109755 2 214 5.23E-57 T 13-10-2018 RAM_46175 ee433bf79362f53e778a9fca40f34602 221 Pfam PF01895 PhoU domain 18 103 8.0E-16 T 13-10-2018 IPR026022 PhoU domain RAM_46175 ee433bf79362f53e778a9fca40f34602 221 Pfam PF01895 PhoU domain 122 203 3.0E-11 T 13-10-2018 IPR026022 PhoU domain RAM_46175 ee433bf79362f53e778a9fca40f34602 221 PIRSF PIRSF003107 1 215 1.4E-54 T 13-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 RAM_45780 7cddb8d9c971ed2d4bb6e734938a5b2e 936 Gene3D G3DSA:1.10.287.130 457 479 8.7E-10 T 13-10-2018 RAM_45780 7cddb8d9c971ed2d4bb6e734938a5b2e 936 SUPERFAMILY SSF55874 518 632 1.44E-14 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_45780 7cddb8d9c971ed2d4bb6e734938a5b2e 936 Gene3D G3DSA:3.30.565.10 480 630 8.7E-10 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_45780 7cddb8d9c971ed2d4bb6e734938a5b2e 936 SMART SM00387 521 633 6.4E-5 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_45780 7cddb8d9c971ed2d4bb6e734938a5b2e 936 Pfam PF00672 HAMP domain 339 404 1.4E-8 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_45780 7cddb8d9c971ed2d4bb6e734938a5b2e 936 SMART SM00304 339 409 9.9E-5 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_45780 7cddb8d9c971ed2d4bb6e734938a5b2e 936 Pfam PF08376 Nitrate and nitrite sensing 71 301 9.3E-22 T 13-10-2018 IPR013587 Nitrate/nitrite sensing protein RAM_01550 946ed8b57de4a8d8bfbb97ca711c2e1e 249 Pfam PF01522 Polysaccharide deacetylase 68 188 1.8E-21 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 RAM_01550 946ed8b57de4a8d8bfbb97ca711c2e1e 249 SUPERFAMILY SSF88713 62 248 5.44E-32 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RAM_01550 946ed8b57de4a8d8bfbb97ca711c2e1e 249 Gene3D G3DSA:3.20.20.370 63 249 7.0E-32 T 13-10-2018 RAM_27560 f172d1d70e58e3ef963c184b89860b53 283 Pfam PF00005 ABC transporter 22 160 1.7E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_27560 f172d1d70e58e3ef963c184b89860b53 283 Gene3D G3DSA:3.40.50.300 2 231 3.8E-59 T 13-10-2018 RAM_27560 f172d1d70e58e3ef963c184b89860b53 283 SMART SM00382 31 215 1.2E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_27560 f172d1d70e58e3ef963c184b89860b53 283 SUPERFAMILY SSF52540 4 220 6.25E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_27560 f172d1d70e58e3ef963c184b89860b53 283 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_43815 21e2180c11e552b482dae698c4500070 528 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 375 518 1.2E-29 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RAM_43815 21e2180c11e552b482dae698c4500070 528 Gene3D G3DSA:3.40.50.970 3 174 2.7E-58 T 13-10-2018 RAM_43815 21e2180c11e552b482dae698c4500070 528 SUPERFAMILY SSF52518 5 177 1.77E-36 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_43815 21e2180c11e552b482dae698c4500070 528 SUPERFAMILY SSF52518 350 521 3.93E-46 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_43815 21e2180c11e552b482dae698c4500070 528 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 170 3.0E-40 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RAM_43815 21e2180c11e552b482dae698c4500070 528 Gene3D G3DSA:3.40.50.970 332 527 4.4E-50 T 13-10-2018 RAM_43815 21e2180c11e552b482dae698c4500070 528 Gene3D G3DSA:3.40.50.1220 181 331 4.9E-31 T 13-10-2018 RAM_43815 21e2180c11e552b482dae698c4500070 528 SUPERFAMILY SSF52467 182 338 8.88E-47 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily RAM_43815 21e2180c11e552b482dae698c4500070 528 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 190 275 3.9E-14 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 RAM_43815 21e2180c11e552b482dae698c4500070 528 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 408 427 - T 13-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 RAM_19070 e518de00b263aabd5366d07207ba34d9 814 Gene3D G3DSA:2.60.120.260 1 190 3.2E-57 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_19070 e518de00b263aabd5366d07207ba34d9 814 Pfam PF00703 Glycosyl hydrolases family 2 202 297 1.2E-7 T 13-10-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RAM_19070 e518de00b263aabd5366d07207ba34d9 814 SUPERFAMILY SSF51445 294 637 2.94E-106 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_19070 e518de00b263aabd5366d07207ba34d9 814 Gene3D G3DSA:2.60.40.10 194 296 1.9E-14 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_19070 e518de00b263aabd5366d07207ba34d9 814 Gene3D G3DSA:3.20.20.80 297 635 2.1E-116 T 13-10-2018 RAM_19070 e518de00b263aabd5366d07207ba34d9 814 SUPERFAMILY SSF49303 192 297 3.74E-18 T 13-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily RAM_19070 e518de00b263aabd5366d07207ba34d9 814 SUPERFAMILY SSF49785 3 189 2.13E-49 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_35865 d15f9ecade96879de559434b160cb037 328 Gene3D G3DSA:1.10.150.110 2 79 1.7E-11 T 13-10-2018 IPR027421 DNA polymerase lambda lyase domain superfamily RAM_35865 d15f9ecade96879de559434b160cb037 328 SMART SM00481 97 176 2.9E-14 T 13-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal RAM_35865 d15f9ecade96879de559434b160cb037 328 SUPERFAMILY SSF89550 96 323 4.71E-48 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 RAM_35865 d15f9ecade96879de559434b160cb037 328 SUPERFAMILY SSF47802 3 71 6.41E-12 T 13-10-2018 IPR027421 DNA polymerase lambda lyase domain superfamily RAM_35865 d15f9ecade96879de559434b160cb037 328 Pfam PF14716 Helix-hairpin-helix domain 4 69 3.3E-15 T 13-10-2018 IPR010996 DNA polymerase beta-like, N-terminal domain RAM_35865 d15f9ecade96879de559434b160cb037 328 Gene3D G3DSA:3.20.20.140 92 328 8.7E-65 T 13-10-2018 RAM_35865 d15f9ecade96879de559434b160cb037 328 PIRSF PIRSF036978 1 328 4.6E-151 T 13-10-2018 IPR017078 Uncharacterised conserved protein UCP036978, histidinol phosphatase-related hydrolase, SCO0789 RAM_27925 99fe87042b5e2f50821ed67c831390ac 301 Gene3D G3DSA:3.40.50.12370 5 298 1.4E-94 T 13-10-2018 RAM_27925 99fe87042b5e2f50821ed67c831390ac 301 SUPERFAMILY SSF52402 159 298 1.0E-34 T 13-10-2018 RAM_27925 99fe87042b5e2f50821ed67c831390ac 301 PRINTS PR01438 Universal stress protein signature 157 175 8.8E-19 T 13-10-2018 IPR006015 Universal stress protein A RAM_27925 99fe87042b5e2f50821ed67c831390ac 301 PRINTS PR01438 Universal stress protein signature 274 296 8.8E-19 T 13-10-2018 IPR006015 Universal stress protein A RAM_27925 99fe87042b5e2f50821ed67c831390ac 301 PRINTS PR01438 Universal stress protein signature 256 268 8.8E-19 T 13-10-2018 IPR006015 Universal stress protein A RAM_27925 99fe87042b5e2f50821ed67c831390ac 301 SUPERFAMILY SSF52402 7 149 1.26E-27 T 13-10-2018 RAM_27925 99fe87042b5e2f50821ed67c831390ac 301 Pfam PF00582 Universal stress protein family 160 296 3.5E-27 T 13-10-2018 IPR006016 UspA RAM_27925 99fe87042b5e2f50821ed67c831390ac 301 Pfam PF00582 Universal stress protein family 7 146 1.1E-22 T 13-10-2018 IPR006016 UspA RAM_37920 5b041f2e923349bc04cbf4df36889c8e 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 8.9E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_37920 5b041f2e923349bc04cbf4df36889c8e 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 8.9E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_37920 5b041f2e923349bc04cbf4df36889c8e 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 8.9E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_37920 5b041f2e923349bc04cbf4df36889c8e 297 Gene3D G3DSA:3.40.190.10 170 270 2.6E-28 T 13-10-2018 RAM_37920 5b041f2e923349bc04cbf4df36889c8e 297 Gene3D G3DSA:1.10.10.10 1 85 1.6E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_37920 5b041f2e923349bc04cbf4df36889c8e 297 SUPERFAMILY SSF53850 90 296 1.33E-24 T 13-10-2018 RAM_37920 5b041f2e923349bc04cbf4df36889c8e 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 61 5.9E-19 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_37920 5b041f2e923349bc04cbf4df36889c8e 297 Pfam PF03466 LysR substrate binding domain 89 294 5.3E-25 T 13-10-2018 IPR005119 LysR, substrate-binding RAM_37920 5b041f2e923349bc04cbf4df36889c8e 297 Gene3D G3DSA:3.40.190.10 92 278 2.6E-28 T 13-10-2018 RAM_37920 5b041f2e923349bc04cbf4df36889c8e 297 SUPERFAMILY SSF46785 5 110 2.64E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_06815 033753fddf5fc61d259dbdf55b1ff8ef 574 Pfam PF00890 FAD binding domain 39 560 7.5E-88 T 13-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_06815 033753fddf5fc61d259dbdf55b1ff8ef 574 SUPERFAMILY SSF51905 31 573 2.25E-40 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_06815 033753fddf5fc61d259dbdf55b1ff8ef 574 SUPERFAMILY SSF56425 340 513 1.07E-36 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_06815 033753fddf5fc61d259dbdf55b1ff8ef 574 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 39 61 3.6E-6 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAM_06815 033753fddf5fc61d259dbdf55b1ff8ef 574 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 252 268 3.6E-6 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAM_14655 7a1b12e64d803774dce327fd073abc7a 1071 SUPERFAMILY SSF48371 794 959 2.18E-7 T 13-10-2018 IPR016024 Armadillo-type fold RAM_14655 7a1b12e64d803774dce327fd073abc7a 1071 SUPERFAMILY SSF52540 180 366 1.41E-5 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_14655 7a1b12e64d803774dce327fd073abc7a 1071 SUPERFAMILY SSF48431 608 902 4.58E-5 T 13-10-2018 IPR011030 Lipovitellin-phosvitin complex, superhelical domain Reactome: R-HSA-8866423|Reactome: R-HSA-8963888 RAM_14655 7a1b12e64d803774dce327fd073abc7a 1071 Gene3D G3DSA:1.25.10.110 813 903 5.4E-7 T 13-10-2018 RAM_38035 1322b06f519273b74c6cc3e8bb5bf1e4 369 SUPERFAMILY SSF53756 7 361 1.7E-79 T 13-10-2018 RAM_38035 1322b06f519273b74c6cc3e8bb5bf1e4 369 Gene3D G3DSA:3.40.50.2000 167 342 9.4E-66 T 13-10-2018 RAM_38035 1322b06f519273b74c6cc3e8bb5bf1e4 369 Pfam PF13439 Glycosyltransferase Family 4 13 171 3.2E-27 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 RAM_38035 1322b06f519273b74c6cc3e8bb5bf1e4 369 Pfam PF13692 Glycosyl transferases group 1 191 327 1.4E-30 T 13-10-2018 RAM_38035 1322b06f519273b74c6cc3e8bb5bf1e4 369 Gene3D G3DSA:3.40.50.2000 7 357 9.4E-66 T 13-10-2018 RAM_44060 44a20d2dc8bfaafa34f508dc8debe680 347 SUPERFAMILY SSF53697 9 345 3.29E-67 T 13-10-2018 RAM_44060 44a20d2dc8bfaafa34f508dc8debe680 347 Pfam PF01380 SIS domain 47 167 5.7E-15 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 RAM_44060 44a20d2dc8bfaafa34f508dc8debe680 347 Pfam PF01380 SIS domain 207 291 4.3E-12 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 RAM_44060 44a20d2dc8bfaafa34f508dc8debe680 347 Gene3D G3DSA:3.40.50.10490 5 188 1.9E-43 T 13-10-2018 RAM_44060 44a20d2dc8bfaafa34f508dc8debe680 347 Gene3D G3DSA:3.40.50.10490 195 346 2.3E-32 T 13-10-2018 RAM_47155 1c9b38a1ebe662f45152fb6780b1e583 186 SMART SM00986 19 177 1.5E-9 T 13-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 RAM_47155 1c9b38a1ebe662f45152fb6780b1e583 186 SMART SM00987 19 177 1.5E-9 T 13-10-2018 RAM_47155 1c9b38a1ebe662f45152fb6780b1e583 186 Pfam PF03167 Uracil DNA glycosylase superfamily 20 176 9.1E-25 T 13-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 RAM_47155 1c9b38a1ebe662f45152fb6780b1e583 186 SUPERFAMILY SSF52141 17 177 2.91E-45 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 RAM_47155 1c9b38a1ebe662f45152fb6780b1e583 186 Gene3D G3DSA:3.40.470.10 17 183 5.0E-62 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 RAM_47065 4f5507d2727b000946d23b3a0091db03 1488 Pfam PF01345 Domain of unknown function DUF11 991 1071 7.8E-7 T 13-10-2018 IPR001434 Domain of unknown function DUF11 RAM_47065 4f5507d2727b000946d23b3a0091db03 1488 Pfam PF01345 Domain of unknown function DUF11 450 511 5.0E-6 T 13-10-2018 IPR001434 Domain of unknown function DUF11 RAM_47065 4f5507d2727b000946d23b3a0091db03 1488 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 1098 1128 4.6E-6 T 13-10-2018 IPR001434 Domain of unknown function DUF11 RAM_47065 4f5507d2727b000946d23b3a0091db03 1488 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 994 1029 4.8E-7 T 13-10-2018 IPR001434 Domain of unknown function DUF11 RAM_47065 4f5507d2727b000946d23b3a0091db03 1488 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 652 689 1.3E-6 T 13-10-2018 IPR001434 Domain of unknown function DUF11 RAM_47065 4f5507d2727b000946d23b3a0091db03 1488 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 551 585 9.1E-7 T 13-10-2018 IPR001434 Domain of unknown function DUF11 RAM_47065 4f5507d2727b000946d23b3a0091db03 1488 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 1297 1327 2.8E-7 T 13-10-2018 IPR001434 Domain of unknown function DUF11 RAM_47065 4f5507d2727b000946d23b3a0091db03 1488 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 1399 1427 2.0E-5 T 13-10-2018 IPR001434 Domain of unknown function DUF11 RAM_47065 4f5507d2727b000946d23b3a0091db03 1488 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 355 384 7.3E-5 T 13-10-2018 IPR001434 Domain of unknown function DUF11 RAM_47065 4f5507d2727b000946d23b3a0091db03 1488 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 451 485 1.9E-7 T 13-10-2018 IPR001434 Domain of unknown function DUF11 RAM_47065 4f5507d2727b000946d23b3a0091db03 1488 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 756 785 3.9E-4 T 13-10-2018 IPR001434 Domain of unknown function DUF11 RAM_03290 b6dec2d91bf007b3ade6b7e042741c9e 356 Gene3D G3DSA:3.20.20.30 6 356 7.9E-104 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_03290 b6dec2d91bf007b3ade6b7e042741c9e 356 SUPERFAMILY SSF51679 6 356 7.2E-91 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_03290 b6dec2d91bf007b3ade6b7e042741c9e 356 Pfam PF00296 Luciferase-like monooxygenase 6 322 1.9E-75 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_26085 2e1f8bbe037e0a278a2ad302b6444969 188 Pfam PF00857 Isochorismatase family 10 142 9.5E-34 T 13-10-2018 IPR000868 Isochorismatase-like GO:0003824 RAM_26085 2e1f8bbe037e0a278a2ad302b6444969 188 SUPERFAMILY SSF52499 7 145 5.49E-42 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 RAM_26085 2e1f8bbe037e0a278a2ad302b6444969 188 Gene3D G3DSA:3.40.50.850 8 167 1.9E-40 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 RAM_25140 706d82eee0e075c39ac246d78abe1773 194 SUPERFAMILY SSF48498 78 191 1.26E-24 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_25140 706d82eee0e075c39ac246d78abe1773 194 Gene3D G3DSA:1.10.357.10 69 192 3.1E-28 T 13-10-2018 RAM_25140 706d82eee0e075c39ac246d78abe1773 194 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 56 2.6E-12 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_25140 706d82eee0e075c39ac246d78abe1773 194 Gene3D G3DSA:1.10.10.60 1 66 8.1E-25 T 13-10-2018 RAM_25140 706d82eee0e075c39ac246d78abe1773 194 Pfam PF13977 BetI-type transcriptional repressor, C-terminal 81 192 7.4E-7 T 13-10-2018 IPR039538 BetI-type transcriptional repressor, C-terminal RAM_25140 706d82eee0e075c39ac246d78abe1773 194 SUPERFAMILY SSF46689 2 75 2.1E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_26845 44cc3a6c42fdd6341ee7883343d41a93 145 SMART SM00960 12 102 1.6E-26 T 13-10-2018 IPR004942 Roadblock/LAMTOR2 domain RAM_26845 44cc3a6c42fdd6341ee7883343d41a93 145 SUPERFAMILY SSF103196 7 129 4.36E-27 T 13-10-2018 RAM_26845 44cc3a6c42fdd6341ee7883343d41a93 145 Pfam PF03259 Roadblock/LC7 domain 12 102 3.5E-17 T 13-10-2018 IPR004942 Roadblock/LAMTOR2 domain RAM_26845 44cc3a6c42fdd6341ee7883343d41a93 145 Gene3D G3DSA:3.30.450.30 8 133 7.9E-38 T 13-10-2018 RAM_06640 353e403bf2248a3c17e595015c7f018e 525 Gene3D G3DSA:3.40.50.300 2 250 9.1E-62 T 13-10-2018 RAM_06640 353e403bf2248a3c17e595015c7f018e 525 ProSitePatterns PS00211 ABC transporters family signature. 415 429 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_06640 353e403bf2248a3c17e595015c7f018e 525 SUPERFAMILY SSF52540 15 239 5.85E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_06640 353e403bf2248a3c17e595015c7f018e 525 Gene3D G3DSA:3.40.50.300 279 520 1.0E-46 T 13-10-2018 RAM_06640 353e403bf2248a3c17e595015c7f018e 525 SUPERFAMILY SSF52540 283 503 2.66E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_06640 353e403bf2248a3c17e595015c7f018e 525 SMART SM00382 297 491 1.0E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_06640 353e403bf2248a3c17e595015c7f018e 525 SMART SM00382 41 229 3.5E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_06640 353e403bf2248a3c17e595015c7f018e 525 Pfam PF00005 ABC transporter 288 442 9.1E-24 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_06640 353e403bf2248a3c17e595015c7f018e 525 Pfam PF00005 ABC transporter 32 182 4.1E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_36785 19349e59d54d141aeccf10d044487420 494 Gene3D G3DSA:1.10.10.10 270 341 5.1E-12 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_36785 19349e59d54d141aeccf10d044487420 494 Gene3D G3DSA:1.10.10.10 25 89 2.8E-10 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_36785 19349e59d54d141aeccf10d044487420 494 Gene3D G3DSA:1.20.120.530 346 490 7.8E-20 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_36785 19349e59d54d141aeccf10d044487420 494 SUPERFAMILY SSF46785 25 95 3.0E-10 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_36785 19349e59d54d141aeccf10d044487420 494 SUPERFAMILY SSF48008 113 247 2.62E-19 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_36785 19349e59d54d141aeccf10d044487420 494 SMART SM00345 277 338 5.9E-5 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_36785 19349e59d54d141aeccf10d044487420 494 SMART SM00345 30 91 3.2E-4 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_36785 19349e59d54d141aeccf10d044487420 494 SUPERFAMILY SSF46785 270 342 2.56E-11 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_36785 19349e59d54d141aeccf10d044487420 494 SUPERFAMILY SSF48008 362 489 4.18E-14 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_36785 19349e59d54d141aeccf10d044487420 494 SMART SM00895 363 488 4.6E-8 T 13-10-2018 IPR011711 GntR, C-terminal RAM_36785 19349e59d54d141aeccf10d044487420 494 SMART SM00895 116 241 5.2E-11 T 13-10-2018 IPR011711 GntR, C-terminal RAM_36785 19349e59d54d141aeccf10d044487420 494 Pfam PF07729 FCD domain 116 240 4.4E-18 T 13-10-2018 IPR011711 GntR, C-terminal RAM_36785 19349e59d54d141aeccf10d044487420 494 Pfam PF07729 FCD domain 367 487 2.4E-11 T 13-10-2018 IPR011711 GntR, C-terminal RAM_36785 19349e59d54d141aeccf10d044487420 494 Gene3D G3DSA:1.20.120.530 114 245 1.5E-20 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_36785 19349e59d54d141aeccf10d044487420 494 Pfam PF00392 Bacterial regulatory proteins, gntR family 27 84 8.1E-8 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_36785 19349e59d54d141aeccf10d044487420 494 Pfam PF00392 Bacterial regulatory proteins, gntR family 274 333 1.1E-8 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_33410 119b3651e09e99b9db8b08a3984fef14 173 Gene3D G3DSA:2.60.120.10 6 166 2.2E-32 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_33410 119b3651e09e99b9db8b08a3984fef14 173 SUPERFAMILY SSF51182 4 160 5.26E-23 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RAM_33410 119b3651e09e99b9db8b08a3984fef14 173 Pfam PF07883 Cupin domain 56 110 2.6E-12 T 13-10-2018 IPR013096 Cupin 2, conserved barrel RAM_32715 9f4b3cbe884eb083ea2b8bf51ea993c5 400 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 342 351 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RAM_32715 9f4b3cbe884eb083ea2b8bf51ea993c5 400 Gene3D G3DSA:1.10.630.10 4 400 8.3E-102 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_32715 9f4b3cbe884eb083ea2b8bf51ea993c5 400 Pfam PF00067 Cytochrome P450 183 369 1.7E-18 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_32715 9f4b3cbe884eb083ea2b8bf51ea993c5 400 PRINTS PR00385 P450 superfamily signature 273 284 1.7E-5 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_32715 9f4b3cbe884eb083ea2b8bf51ea993c5 400 PRINTS PR00385 P450 superfamily signature 238 255 1.7E-5 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_32715 9f4b3cbe884eb083ea2b8bf51ea993c5 400 PRINTS PR00385 P450 superfamily signature 340 349 1.7E-5 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_32715 9f4b3cbe884eb083ea2b8bf51ea993c5 400 PRINTS PR00385 P450 superfamily signature 349 360 1.7E-5 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_32715 9f4b3cbe884eb083ea2b8bf51ea993c5 400 PRINTS PR00359 B-class P450 signature 290 317 3.8E-43 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_32715 9f4b3cbe884eb083ea2b8bf51ea993c5 400 PRINTS PR00359 B-class P450 signature 318 333 3.8E-43 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_32715 9f4b3cbe884eb083ea2b8bf51ea993c5 400 PRINTS PR00359 B-class P450 signature 340 349 3.8E-43 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_32715 9f4b3cbe884eb083ea2b8bf51ea993c5 400 PRINTS PR00359 B-class P450 signature 96 107 3.8E-43 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_32715 9f4b3cbe884eb083ea2b8bf51ea993c5 400 PRINTS PR00359 B-class P450 signature 273 284 3.8E-43 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_32715 9f4b3cbe884eb083ea2b8bf51ea993c5 400 PRINTS PR00359 B-class P450 signature 349 360 3.8E-43 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_32715 9f4b3cbe884eb083ea2b8bf51ea993c5 400 PRINTS PR00359 B-class P450 signature 143 159 3.8E-43 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_32715 9f4b3cbe884eb083ea2b8bf51ea993c5 400 PRINTS PR00359 B-class P450 signature 193 215 3.8E-43 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_32715 9f4b3cbe884eb083ea2b8bf51ea993c5 400 PRINTS PR00359 B-class P450 signature 160 175 3.8E-43 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_32715 9f4b3cbe884eb083ea2b8bf51ea993c5 400 SUPERFAMILY SSF48264 9 400 1.31E-80 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_35490 a90e3062c6bb299d40d1718701d2bcc4 457 SUPERFAMILY SSF53850 27 453 5.98E-51 T 13-10-2018 RAM_35490 a90e3062c6bb299d40d1718701d2bcc4 457 Pfam PF01547 Bacterial extracellular solute-binding protein 59 341 3.1E-26 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein RAM_35490 a90e3062c6bb299d40d1718701d2bcc4 457 Gene3D G3DSA:3.40.190.10 37 456 1.9E-59 T 13-10-2018 RAM_00715 4c9bb43c93e24424576777377da9c352 432 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 1 394 3.2E-82 T 13-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 RAM_00715 4c9bb43c93e24424576777377da9c352 432 SUPERFAMILY SSF103473 2 427 1.96E-57 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_00715 4c9bb43c93e24424576777377da9c352 432 Gene3D G3DSA:1.20.1250.20 1 176 2.1E-29 T 13-10-2018 RAM_00715 4c9bb43c93e24424576777377da9c352 432 Pfam PF07690 Major Facilitator Superfamily 2 384 5.0E-48 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_00715 4c9bb43c93e24424576777377da9c352 432 Gene3D G3DSA:1.20.1250.20 234 432 1.8E-19 T 13-10-2018 RAM_43180 5647f093832bf004bf17b6ddf5f47918 575 TIGRFAM TIGR03767 P_acnes_RR: metallophosphoesterase, PPA1498 family 58 573 9.7E-207 T 13-10-2018 IPR022506 Metallophosphoesterase, PPA1498 RAM_43180 5647f093832bf004bf17b6ddf5f47918 575 SUPERFAMILY SSF56300 94 509 1.46E-29 T 13-10-2018 RAM_43180 5647f093832bf004bf17b6ddf5f47918 575 Gene3D G3DSA:3.60.21.10 339 527 5.6E-6 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like RAM_16860 c36301e424516da720289a728bc0682f 272 Gene3D G3DSA:1.10.3720.10 2 263 5.3E-63 T 13-10-2018 IPR035906 MetI-like superfamily RAM_16860 c36301e424516da720289a728bc0682f 272 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 81 265 1.8E-20 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_16860 c36301e424516da720289a728bc0682f 272 SUPERFAMILY SSF161098 3 272 2.43E-71 T 13-10-2018 IPR035906 MetI-like superfamily RAM_14130 5004c2acef117893a8d986b43314d1df 330 SUPERFAMILY SSF142338 2 308 1.7E-80 T 13-10-2018 RAM_14130 5004c2acef117893a8d986b43314d1df 330 Pfam PF01933 Uncharacterised protein family UPF0052 4 277 4.1E-70 T 13-10-2018 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 RAM_14130 5004c2acef117893a8d986b43314d1df 330 Hamap MF_00973 Gluconeogenesis factor. 1 314 30.418 T 13-10-2018 IPR010119 Gluconeogenesis factor RAM_14130 5004c2acef117893a8d986b43314d1df 330 Gene3D G3DSA:3.40.50.12300 1 312 2.3E-91 T 13-10-2018 IPR038136 Gluconeogenesis factor superfamily RAM_14130 5004c2acef117893a8d986b43314d1df 330 TIGRFAM TIGR01826 CofD_related: conserved hypothetical protein 4 277 4.1E-84 T 13-10-2018 IPR010119 Gluconeogenesis factor RAM_32180 d414db8b180fcaf8e1ac185a8dde8e43 269 SUPERFAMILY SSF46946 122 190 5.0E-15 T 13-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 RAM_32180 d414db8b180fcaf8e1ac185a8dde8e43 269 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 123 198 1.0E-8 T 13-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 RAM_32180 d414db8b180fcaf8e1ac185a8dde8e43 269 Gene3D G3DSA:1.10.8.50 125 263 3.8E-26 T 13-10-2018 RAM_32180 d414db8b180fcaf8e1ac185a8dde8e43 269 SMART SM01232 123 216 4.0E-17 T 13-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 RAM_32180 d414db8b180fcaf8e1ac185a8dde8e43 269 SUPERFAMILY SSF57716 221 262 1.03E-5 T 13-10-2018 RAM_32180 d414db8b180fcaf8e1ac185a8dde8e43 269 Gene3D G3DSA:3.20.190.10 2 124 3.8E-24 T 13-10-2018 IPR035937 MutM-like, N-terminal RAM_32180 d414db8b180fcaf8e1ac185a8dde8e43 269 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 2 103 1.8E-7 T 13-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 RAM_32180 d414db8b180fcaf8e1ac185a8dde8e43 269 SUPERFAMILY SSF81624 2 124 8.9E-24 T 13-10-2018 IPR035937 MutM-like, N-terminal RAM_32180 d414db8b180fcaf8e1ac185a8dde8e43 269 SMART SM00898 2 112 1.4E-17 T 13-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 RAM_15750 4d7f9841fe49c47d05eb2563823377ab 340 ProSitePatterns PS00356 LacI-type HTH domain signature. 13 31 - T 13-10-2018 RAM_15750 4d7f9841fe49c47d05eb2563823377ab 340 Gene3D G3DSA:3.40.50.2300 84 332 9.3E-67 T 13-10-2018 RAM_15750 4d7f9841fe49c47d05eb2563823377ab 340 SMART SM00354 10 84 2.6E-18 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_15750 4d7f9841fe49c47d05eb2563823377ab 340 SUPERFAMILY SSF53822 83 339 1.68E-62 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_15750 4d7f9841fe49c47d05eb2563823377ab 340 Gene3D G3DSA:1.10.260.40 5 66 5.8E-18 T 13-10-2018 RAM_15750 4d7f9841fe49c47d05eb2563823377ab 340 SUPERFAMILY SSF47413 10 61 3.09E-13 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_15750 4d7f9841fe49c47d05eb2563823377ab 340 Pfam PF13377 Periplasmic binding protein-like domain 180 339 2.0E-36 T 13-10-2018 RAM_15750 4d7f9841fe49c47d05eb2563823377ab 340 Pfam PF00356 Bacterial regulatory proteins, lacI family 12 56 3.2E-16 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_15750 4d7f9841fe49c47d05eb2563823377ab 340 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 22 32 1.2E-5 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_15750 4d7f9841fe49c47d05eb2563823377ab 340 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 12 22 1.2E-5 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_15750 4d7f9841fe49c47d05eb2563823377ab 340 Gene3D G3DSA:3.40.50.2300 172 334 9.3E-67 T 13-10-2018 RAM_21495 79563576590fa0b75dac545f3e7a970b 351 Gene3D G3DSA:1.10.8.60 289 351 1.0E-28 T 13-10-2018 RAM_21495 79563576590fa0b75dac545f3e7a970b 351 ProDom PD005364 ALDOLASE 4-HYDROXY-2-OXOVALERATE LYASE PYRUVATE 4.1.3.- PLASMID HMG-COA LYASE-LIKE TRANSFERASE HOA 289 347 9.0E-16 T 13-10-2018 IPR012425 DmpG-like communication GO:0016833|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 RAM_21495 79563576590fa0b75dac545f3e7a970b 351 Pfam PF00682 HMGL-like 20 277 1.9E-55 T 13-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 RAM_21495 79563576590fa0b75dac545f3e7a970b 351 TIGRFAM TIGR03217 4OH_2_O_val_ald: 4-hydroxy-2-oxovalerate aldolase 19 349 4.6E-145 T 13-10-2018 IPR017629 4-hydroxy-2-oxovalerate aldolase GO:0008701|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 RAM_21495 79563576590fa0b75dac545f3e7a970b 351 SUPERFAMILY SSF89000 302 350 1.45E-15 T 13-10-2018 RAM_21495 79563576590fa0b75dac545f3e7a970b 351 Hamap MF_01656 4-hydroxy-2-oxovalerate aldolase [mhpE]. 1 351 165.496 T 13-10-2018 IPR017629 4-hydroxy-2-oxovalerate aldolase GO:0008701|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 RAM_21495 79563576590fa0b75dac545f3e7a970b 351 SUPERFAMILY SSF51569 17 287 3.66E-64 T 13-10-2018 RAM_21495 79563576590fa0b75dac545f3e7a970b 351 Gene3D G3DSA:3.20.20.70 11 282 2.4E-85 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_21495 79563576590fa0b75dac545f3e7a970b 351 Pfam PF07836 DmpG-like communication domain 287 348 2.7E-29 T 13-10-2018 IPR012425 DmpG-like communication GO:0016833|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 RAM_10300 0828d5d82ab4e398f44b4b7e824d6df4 1081 Gene3D G3DSA:1.25.40.10 893 1059 3.9E-39 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_10300 0828d5d82ab4e398f44b4b7e824d6df4 1081 Pfam PF00931 NB-ARC domain 332 574 3.6E-7 T 13-10-2018 IPR002182 NB-ARC GO:0043531 Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-6798695|Reactome: R-HSA-6803207|Reactome: R-HSA-8953750 RAM_10300 0828d5d82ab4e398f44b4b7e824d6df4 1081 SMART SM00028 948 981 0.041 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_10300 0828d5d82ab4e398f44b4b7e824d6df4 1081 SMART SM00028 748 781 11.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_10300 0828d5d82ab4e398f44b4b7e824d6df4 1081 SMART SM00028 1028 1061 1.8 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_10300 0828d5d82ab4e398f44b4b7e824d6df4 1081 SMART SM00028 788 821 47.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_10300 0828d5d82ab4e398f44b4b7e824d6df4 1081 SMART SM00028 908 941 0.24 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_10300 0828d5d82ab4e398f44b4b7e824d6df4 1081 SMART SM00028 868 901 11.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_10300 0828d5d82ab4e398f44b4b7e824d6df4 1081 SMART SM00028 988 1021 11.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_10300 0828d5d82ab4e398f44b4b7e824d6df4 1081 SMART SM00028 828 861 18.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_10300 0828d5d82ab4e398f44b4b7e824d6df4 1081 PRINTS PR00364 Disease resistance protein signature 413 427 6.6E-7 T 13-10-2018 RAM_10300 0828d5d82ab4e398f44b4b7e824d6df4 1081 PRINTS PR00364 Disease resistance protein signature 335 350 6.6E-7 T 13-10-2018 RAM_10300 0828d5d82ab4e398f44b4b7e824d6df4 1081 PRINTS PR00364 Disease resistance protein signature 500 514 6.6E-7 T 13-10-2018 RAM_10300 0828d5d82ab4e398f44b4b7e824d6df4 1081 SMART SM00862 83 153 1.7E-12 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_10300 0828d5d82ab4e398f44b4b7e824d6df4 1081 Gene3D G3DSA:1.25.40.10 685 892 1.7E-38 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_10300 0828d5d82ab4e398f44b4b7e824d6df4 1081 Pfam PF03704 Bacterial transcriptional activator domain 170 286 5.6E-24 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_10300 0828d5d82ab4e398f44b4b7e824d6df4 1081 Pfam PF13424 Tetratricopeptide repeat 792 859 2.3E-12 T 13-10-2018 RAM_10300 0828d5d82ab4e398f44b4b7e824d6df4 1081 Pfam PF13424 Tetratricopeptide repeat 989 1058 1.7E-8 T 13-10-2018 RAM_10300 0828d5d82ab4e398f44b4b7e824d6df4 1081 Pfam PF13424 Tetratricopeptide repeat 914 980 4.5E-14 T 13-10-2018 RAM_10300 0828d5d82ab4e398f44b4b7e824d6df4 1081 SUPERFAMILY SSF48452 155 308 1.45E-23 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_10300 0828d5d82ab4e398f44b4b7e824d6df4 1081 SMART SM01043 160 286 2.8E-28 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_10300 0828d5d82ab4e398f44b4b7e824d6df4 1081 SUPERFAMILY SSF52540 302 571 4.93E-26 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_10300 0828d5d82ab4e398f44b4b7e824d6df4 1081 Gene3D G3DSA:1.25.40.10 157 307 8.5E-31 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_10300 0828d5d82ab4e398f44b4b7e824d6df4 1081 SUPERFAMILY SSF48452 722 897 2.42E-23 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_10300 0828d5d82ab4e398f44b4b7e824d6df4 1081 Gene3D G3DSA:1.10.260.40 4 55 5.0E-8 T 13-10-2018 RAM_10300 0828d5d82ab4e398f44b4b7e824d6df4 1081 Pfam PF12862 Anaphase-promoting complex subunit 5 754 786 4.6 T 13-10-2018 IPR026000 Anaphase-promoting complex subunit 5 domain Reactome: R-HSA-141430|Reactome: R-HSA-174048|Reactome: R-HSA-174084|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-176407|Reactome: R-HSA-176408|Reactome: R-HSA-176409|Reactome: R-HSA-176412|Reactome: R-HSA-179409|Reactome: R-HSA-2467813|Reactome: R-HSA-2559582|Reactome: R-HSA-69017|Reactome: R-HSA-983168 RAM_10300 0828d5d82ab4e398f44b4b7e824d6df4 1081 SUPERFAMILY SSF46894 69 153 5.1E-12 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_10300 0828d5d82ab4e398f44b4b7e824d6df4 1081 SMART SM00530 10 66 1.3E-6 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_10300 0828d5d82ab4e398f44b4b7e824d6df4 1081 Pfam PF01381 Helix-turn-helix 11 60 1.1E-8 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_10300 0828d5d82ab4e398f44b4b7e824d6df4 1081 SUPERFAMILY SSF48452 911 1060 6.83E-23 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_10300 0828d5d82ab4e398f44b4b7e824d6df4 1081 Gene3D G3DSA:1.10.10.10 56 155 3.1E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_10300 0828d5d82ab4e398f44b4b7e824d6df4 1081 Pfam PF00486 Transcriptional regulatory protein, C terminal 89 153 4.9E-10 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_10300 0828d5d82ab4e398f44b4b7e824d6df4 1081 SUPERFAMILY SSF47413 7 59 2.34E-9 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_00915 1f5237595a21ba872329de970936dcb0 206 Gene3D G3DSA:3.40.220.10 19 203 9.1E-40 T 13-10-2018 RAM_00915 1f5237595a21ba872329de970936dcb0 206 SMART SM00506 48 192 2.8E-8 T 13-10-2018 IPR002589 Macro domain RAM_00915 1f5237595a21ba872329de970936dcb0 206 SUPERFAMILY SSF52949 27 200 1.68E-21 T 13-10-2018 RAM_00915 1f5237595a21ba872329de970936dcb0 206 Pfam PF01661 Macro domain 65 190 4.1E-10 T 13-10-2018 IPR002589 Macro domain RAM_34065 b0979b05f29a84b95c0be90d724b3fa9 71 Pfam PF04149 Domain of unknown function (DUF397) 4 54 9.3E-18 T 13-10-2018 IPR007278 Domain of unknown function DUF397 RAM_03480 a7ff01950cb4f7218f12e6fde7d71e19 93 Pfam PF00203 Ribosomal protein S19 3 83 2.1E-36 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_03480 a7ff01950cb4f7218f12e6fde7d71e19 93 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 13-10-2018 IPR020934 Ribosomal protein S19 conserved site GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_03480 a7ff01950cb4f7218f12e6fde7d71e19 93 PIRSF PIRSF002144 1 93 4.1E-30 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_03480 a7ff01950cb4f7218f12e6fde7d71e19 93 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 8.6E-24 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_03480 a7ff01950cb4f7218f12e6fde7d71e19 93 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 8.6E-24 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_03480 a7ff01950cb4f7218f12e6fde7d71e19 93 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 8.6E-24 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_03480 a7ff01950cb4f7218f12e6fde7d71e19 93 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 25.024 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_03480 a7ff01950cb4f7218f12e6fde7d71e19 93 Gene3D G3DSA:3.30.860.10 1 93 1.3E-39 T 13-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_03480 a7ff01950cb4f7218f12e6fde7d71e19 93 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 92 1.5E-47 T 13-10-2018 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 RAM_03480 a7ff01950cb4f7218f12e6fde7d71e19 93 SUPERFAMILY SSF54570 3 83 7.46E-35 T 13-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_38105 524752aecf65ef447b36b1db8921c05c 755 Pfam PF00041 Fibronectin type III domain 552 628 1.2E-7 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 RAM_38105 524752aecf65ef447b36b1db8921c05c 755 SUPERFAMILY SSF49384 646 753 1.46E-26 T 13-10-2018 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily GO:0030246 RAM_38105 524752aecf65ef447b36b1db8921c05c 755 ProSitePatterns PS00659 Glycosyl hydrolases family 5 signature. 360 369 - T 13-10-2018 IPR018087 Glycoside hydrolase, family 5, conserved site GO:0004553|GO:0005975 RAM_38105 524752aecf65ef447b36b1db8921c05c 755 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 36 214 3.3E-16 T 13-10-2018 IPR013830 SGNH hydrolase-type esterase domain RAM_38105 524752aecf65ef447b36b1db8921c05c 755 Pfam PF00553 Cellulose binding domain 650 752 2.6E-25 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_38105 524752aecf65ef447b36b1db8921c05c 755 Pfam PF00150 Cellulase (glycosyl hydrolase family 5) 252 499 1.1E-38 T 13-10-2018 IPR001547 Glycoside hydrolase, family 5 GO:0004553|GO:0005975 RAM_38105 524752aecf65ef447b36b1db8921c05c 755 SMART SM00637 650 752 5.1E-36 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_38105 524752aecf65ef447b36b1db8921c05c 755 Gene3D G3DSA:2.60.40.10 548 641 2.5E-19 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_38105 524752aecf65ef447b36b1db8921c05c 755 Gene3D G3DSA:3.20.20.80 240 541 7.8E-89 T 13-10-2018 RAM_38105 524752aecf65ef447b36b1db8921c05c 755 Gene3D G3DSA:2.60.40.290 643 755 3.3E-32 T 13-10-2018 IPR012291 CBM2, carbohydrate-binding domain superfamily GO:0004553|GO:0030247 RAM_38105 524752aecf65ef447b36b1db8921c05c 755 SMART SM00060 550 630 9.7E-9 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 RAM_38105 524752aecf65ef447b36b1db8921c05c 755 Gene3D G3DSA:3.40.50.1110 32 235 3.9E-62 T 13-10-2018 IPR036514 SGNH hydrolase superfamily RAM_38105 524752aecf65ef447b36b1db8921c05c 755 SUPERFAMILY SSF49265 547 644 1.43E-16 T 13-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 RAM_38105 524752aecf65ef447b36b1db8921c05c 755 SUPERFAMILY SSF51445 242 538 3.51E-78 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_38105 524752aecf65ef447b36b1db8921c05c 755 SUPERFAMILY SSF52266 26 229 3.82E-31 T 13-10-2018 RAM_34385 96e7bcab297a611f7984cbe328a71c7b 369 PIRSF PIRSF000729 7 367 3.9E-114 T 13-10-2018 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922 RAM_34385 96e7bcab297a611f7984cbe328a71c7b 369 Gene3D G3DSA:2.30.130.10 269 366 1.1E-22 T 13-10-2018 IPR036974 PUA domain superfamily GO:0003723 RAM_34385 96e7bcab297a611f7984cbe328a71c7b 369 SUPERFAMILY SSF53633 12 259 6.55E-59 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RAM_34385 96e7bcab297a611f7984cbe328a71c7b 369 ProSitePatterns PS00902 Glutamate 5-kinase signature. 213 230 - T 13-10-2018 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 RAM_34385 96e7bcab297a611f7984cbe328a71c7b 369 SMART SM00359 280 359 5.6E-16 T 13-10-2018 IPR002478 PUA domain GO:0003723 RAM_34385 96e7bcab297a611f7984cbe328a71c7b 369 PRINTS PR00474 Glutamate 5-kinase family signature 155 182 2.5E-50 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 RAM_34385 96e7bcab297a611f7984cbe328a71c7b 369 PRINTS PR00474 Glutamate 5-kinase family signature 123 144 2.5E-50 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 RAM_34385 96e7bcab297a611f7984cbe328a71c7b 369 PRINTS PR00474 Glutamate 5-kinase family signature 215 235 2.5E-50 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 RAM_34385 96e7bcab297a611f7984cbe328a71c7b 369 PRINTS PR00474 Glutamate 5-kinase family signature 49 63 2.5E-50 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 RAM_34385 96e7bcab297a611f7984cbe328a71c7b 369 PRINTS PR00474 Glutamate 5-kinase family signature 83 111 2.5E-50 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 RAM_34385 96e7bcab297a611f7984cbe328a71c7b 369 TIGRFAM TIGR01027 proB: glutamate 5-kinase 12 365 4.7E-116 T 13-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 RAM_34385 96e7bcab297a611f7984cbe328a71c7b 369 Hamap MF_00456 Glutamate 5-kinase [proB]. 12 262 34.581 T 13-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 RAM_34385 96e7bcab297a611f7984cbe328a71c7b 369 Gene3D G3DSA:3.40.1160.10 2 268 4.2E-77 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RAM_34385 96e7bcab297a611f7984cbe328a71c7b 369 Pfam PF00696 Amino acid kinase family 13 239 1.3E-41 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 RAM_34385 96e7bcab297a611f7984cbe328a71c7b 369 Pfam PF01472 PUA domain 280 345 6.8E-17 T 13-10-2018 IPR002478 PUA domain GO:0003723 RAM_34385 96e7bcab297a611f7984cbe328a71c7b 369 SUPERFAMILY SSF88697 280 365 1.93E-16 T 13-10-2018 IPR015947 PUA-like superfamily RAM_21370 3263e3a904c0a4a097061aa723d4813e 248 Gene3D G3DSA:1.10.10.10 186 241 3.6E-10 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_21370 3263e3a904c0a4a097061aa723d4813e 248 Pfam PF03861 ANTAR domain 184 236 1.4E-19 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 RAM_21370 3263e3a904c0a4a097061aa723d4813e 248 SUPERFAMILY SSF52172 164 236 1.14E-10 T 13-10-2018 IPR011006 CheY-like superfamily RAM_21370 3263e3a904c0a4a097061aa723d4813e 248 PIRSF PIRSF036625 2 246 1.5E-48 T 13-10-2018 IPR012074 GAF-ANTAR transcription anti-termination regulator, putative RAM_21370 3263e3a904c0a4a097061aa723d4813e 248 SMART SM00065 29 180 6.9E-9 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_21370 3263e3a904c0a4a097061aa723d4813e 248 SUPERFAMILY SSF55781 36 181 3.93E-18 T 13-10-2018 RAM_21370 3263e3a904c0a4a097061aa723d4813e 248 SMART SM01012 182 237 6.4E-22 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 RAM_21370 3263e3a904c0a4a097061aa723d4813e 248 Gene3D G3DSA:3.30.450.40 16 185 3.4E-20 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_21370 3263e3a904c0a4a097061aa723d4813e 248 Pfam PF13185 GAF domain 32 170 8.6E-11 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_00520 5b3da728c44341a1cb913beae5771ab8 217 Pfam PF08241 Methyltransferase domain 51 144 2.5E-27 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 RAM_00520 5b3da728c44341a1cb913beae5771ab8 217 Gene3D G3DSA:3.40.50.150 4 200 6.4E-40 T 13-10-2018 RAM_00520 5b3da728c44341a1cb913beae5771ab8 217 SUPERFAMILY SSF53335 26 192 5.06E-39 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_14400 82960b41d778b154c76ae61e64014862 149 Gene3D G3DSA:3.90.1010.10 1 141 4.7E-50 T 13-10-2018 RAM_14400 82960b41d778b154c76ae61e64014862 149 TIGRFAM TIGR01994 SUF_scaf_2: SUF system FeS assembly protein, NifU family 3 139 1.0E-51 T 13-10-2018 RAM_14400 82960b41d778b154c76ae61e64014862 149 SUPERFAMILY SSF82649 2 141 6.54E-49 T 13-10-2018 RAM_14400 82960b41d778b154c76ae61e64014862 149 Pfam PF01592 NifU-like N terminal domain 6 127 1.8E-31 T 13-10-2018 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 RAM_22750 8e7a8be1ddbab519ac99e4a9774b6707 290 SUPERFAMILY SSF46955 16 97 7.33E-13 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily RAM_22750 8e7a8be1ddbab519ac99e4a9774b6707 290 SUPERFAMILY SSF52242 177 254 2.51E-6 T 13-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 RAM_22750 8e7a8be1ddbab519ac99e4a9774b6707 290 Pfam PF02607 B12 binding domain 96 152 5.7E-5 T 13-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_22750 8e7a8be1ddbab519ac99e4a9774b6707 290 Gene3D G3DSA:1.10.1240.10 95 166 5.3E-8 T 13-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_22750 8e7a8be1ddbab519ac99e4a9774b6707 290 SMART SM00422 14 82 1.1E-7 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_22750 8e7a8be1ddbab519ac99e4a9774b6707 290 Pfam PF13411 MerR HTH family regulatory protein 17 77 8.1E-14 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_22750 8e7a8be1ddbab519ac99e4a9774b6707 290 Gene3D G3DSA:1.10.1660.10 11 81 2.7E-17 T 13-10-2018 RAM_22750 8e7a8be1ddbab519ac99e4a9774b6707 290 Gene3D G3DSA:3.40.50.280 174 288 2.0E-16 T 13-10-2018 RAM_13550 ec6d4d9befbd01169136c41d357d2301 136 Pfam PF03795 YCII-related domain 29 107 3.0E-10 T 13-10-2018 IPR005545 YCII-related RAM_13550 ec6d4d9befbd01169136c41d357d2301 136 Gene3D G3DSA:3.30.70.1060 1 130 3.5E-24 T 13-10-2018 RAM_13550 ec6d4d9befbd01169136c41d357d2301 136 SUPERFAMILY SSF54909 21 126 2.73E-22 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_12860 82df84350db03f91440c6a43bc8e5b71 793 Pfam PF00005 ABC transporter 503 711 2.9E-12 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_12860 82df84350db03f91440c6a43bc8e5b71 793 Gene3D G3DSA:1.20.1580.10 579 617 8.0E-102 T 13-10-2018 RAM_12860 82df84350db03f91440c6a43bc8e5b71 793 SUPERFAMILY SSF52540 19 454 3.4E-30 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_12860 82df84350db03f91440c6a43bc8e5b71 793 Gene3D G3DSA:1.20.1580.10 106 372 1.4E-150 T 13-10-2018 RAM_12860 82df84350db03f91440c6a43bc8e5b71 793 Gene3D G3DSA:1.10.8.280 186 294 1.4E-150 T 13-10-2018 RAM_12860 82df84350db03f91440c6a43bc8e5b71 793 SUPERFAMILY SSF52540 498 777 6.8E-37 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_12860 82df84350db03f91440c6a43bc8e5b71 793 Gene3D G3DSA:3.40.50.300 497 787 8.0E-102 T 13-10-2018 RAM_12860 82df84350db03f91440c6a43bc8e5b71 793 Gene3D G3DSA:3.40.50.300 20 473 1.4E-150 T 13-10-2018 RAM_14310 858e98fd315a3afc3ed88af3aa514fbf 749 Gene3D G3DSA:3.40.50.300 430 591 3.9E-7 T 13-10-2018 RAM_14310 858e98fd315a3afc3ed88af3aa514fbf 749 Gene3D G3DSA:3.40.50.300 181 404 1.9E-10 T 13-10-2018 RAM_14310 858e98fd315a3afc3ed88af3aa514fbf 749 SUPERFAMILY SSF52540 185 741 2.54E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_14310 858e98fd315a3afc3ed88af3aa514fbf 749 Gene3D G3DSA:3.40.50.300 599 748 6.1E-11 T 13-10-2018 RAM_14310 858e98fd315a3afc3ed88af3aa514fbf 749 Pfam PF13538 UvrD-like helicase C-terminal domain 689 735 4.0E-10 T 13-10-2018 IPR027785 UvrD-like helicase C-terminal domain RAM_14310 858e98fd315a3afc3ed88af3aa514fbf 749 Pfam PF13245 AAA domain 361 573 1.2E-5 T 13-10-2018 RAM_16185 c7f0582accb52b217e6006f7849fa6b3 322 Gene3D G3DSA:3.10.450.50 199 316 1.7E-12 T 13-10-2018 RAM_16185 c7f0582accb52b217e6006f7849fa6b3 322 SUPERFAMILY SSF88946 14 87 4.45E-21 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_16185 c7f0582accb52b217e6006f7849fa6b3 322 SUPERFAMILY SSF88659 130 188 4.86E-15 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_16185 c7f0582accb52b217e6006f7849fa6b3 322 Pfam PF04542 Sigma-70 region 2 20 84 4.6E-18 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_16185 c7f0582accb52b217e6006f7849fa6b3 322 Pfam PF08281 Sigma-70, region 4 133 186 6.9E-18 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_16185 c7f0582accb52b217e6006f7849fa6b3 322 TIGRFAM TIGR02960 SigX5: RNA polymerase sigma-70 factor, TIGR02960 family 20 318 9.6E-90 T 13-10-2018 IPR014305 RNA polymerase sigma-G type, actinobacteria RAM_16185 c7f0582accb52b217e6006f7849fa6b3 322 Gene3D G3DSA:1.10.1740.10 2 86 1.2E-22 T 13-10-2018 RAM_16185 c7f0582accb52b217e6006f7849fa6b3 322 Gene3D G3DSA:1.10.10.10 127 191 1.3E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_16185 c7f0582accb52b217e6006f7849fa6b3 322 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 18 187 1.3E-24 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_16185 c7f0582accb52b217e6006f7849fa6b3 322 SUPERFAMILY SSF54427 200 313 3.86E-11 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_23755 4ec119192729117fddf523cf6d1a689b 270 Pfam PF11296 Protein of unknown function (DUF3097) 7 265 2.0E-121 T 13-10-2018 IPR021447 Protein of unknown function DUF3097 RAM_33330 0ad1d1f458da93711eecdb23615eb45d 311 Gene3D G3DSA:3.30.2010.10 109 184 4.5E-5 T 13-10-2018 RAM_33330 0ad1d1f458da93711eecdb23615eb45d 311 Pfam PF01435 Peptidase family M48 113 190 2.9E-9 T 13-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 RAM_45395 75c2aa1b565da67e6dccd94fa0e1d1f3 151 Gene3D G3DSA:3.30.1330.40 1 150 9.2E-58 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 RAM_45395 75c2aa1b565da67e6dccd94fa0e1d1f3 151 Pfam PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease 6 150 3.4E-29 T 13-10-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like RAM_45395 75c2aa1b565da67e6dccd94fa0e1d1f3 151 SUPERFAMILY SSF55298 2 150 2.2E-54 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 RAM_09635 fa4eccad4f05f2898aa857583cef7df8 378 Gene3D G3DSA:1.20.140.10 205 374 4.0E-37 T 13-10-2018 RAM_09635 fa4eccad4f05f2898aa857583cef7df8 378 Gene3D G3DSA:2.40.110.10 112 202 8.7E-21 T 13-10-2018 RAM_09635 fa4eccad4f05f2898aa857583cef7df8 378 SUPERFAMILY SSF47203 211 358 6.09E-14 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_09635 fa4eccad4f05f2898aa857583cef7df8 378 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 226 357 8.4E-27 T 13-10-2018 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain RAM_09635 fa4eccad4f05f2898aa857583cef7df8 378 SUPERFAMILY SSF56645 10 200 9.16E-27 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_09635 fa4eccad4f05f2898aa857583cef7df8 378 Gene3D G3DSA:1.10.540.10 1 108 1.7E-24 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_09635 fa4eccad4f05f2898aa857583cef7df8 378 PIRSF PIRSF016578 1 376 2.1E-83 T 13-10-2018 RAM_09635 fa4eccad4f05f2898aa857583cef7df8 378 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 11 89 8.5E-8 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_43795 024272c5cab53455895b47053b10acf0 334 Pfam PF09084 NMT1/THI5 like 59 269 1.1E-28 T 13-10-2018 IPR015168 SsuA/THI5-like RAM_43795 024272c5cab53455895b47053b10acf0 334 SMART SM00062 49 284 0.005 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RAM_43795 024272c5cab53455895b47053b10acf0 334 Gene3D G3DSA:3.40.190.10 155 334 4.4E-26 T 13-10-2018 RAM_43795 024272c5cab53455895b47053b10acf0 334 SUPERFAMILY SSF53850 47 265 6.77E-39 T 13-10-2018 RAM_43795 024272c5cab53455895b47053b10acf0 334 Gene3D G3DSA:3.40.190.10 44 145 1.3E-14 T 13-10-2018 RAM_03580 1f934cbb2d52fa39ee5a5eaee37e1f12 258 Pfam PF00557 Metallopeptidase family M24 12 246 8.8E-46 T 13-10-2018 IPR000994 Peptidase M24 RAM_03580 1f934cbb2d52fa39ee5a5eaee37e1f12 258 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 2 254 1.7E-84 T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 RAM_03580 1f934cbb2d52fa39ee5a5eaee37e1f12 258 PRINTS PR00599 Methionine aminopeptidase-1 signature 90 106 4.1E-22 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 RAM_03580 1f934cbb2d52fa39ee5a5eaee37e1f12 258 PRINTS PR00599 Methionine aminopeptidase-1 signature 197 209 4.1E-22 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 RAM_03580 1f934cbb2d52fa39ee5a5eaee37e1f12 258 PRINTS PR00599 Methionine aminopeptidase-1 signature 166 178 4.1E-22 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 RAM_03580 1f934cbb2d52fa39ee5a5eaee37e1f12 258 PRINTS PR00599 Methionine aminopeptidase-1 signature 67 80 4.1E-22 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 RAM_03580 1f934cbb2d52fa39ee5a5eaee37e1f12 258 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 172 190 - T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 RAM_03580 1f934cbb2d52fa39ee5a5eaee37e1f12 258 Gene3D G3DSA:3.90.230.10 1 255 5.7E-95 T 13-10-2018 RAM_03580 1f934cbb2d52fa39ee5a5eaee37e1f12 258 SUPERFAMILY SSF55920 1 253 1.01E-80 T 13-10-2018 IPR036005 Creatinase/aminopeptidase-like RAM_03580 1f934cbb2d52fa39ee5a5eaee37e1f12 258 Hamap MF_01974 Methionine aminopeptidase [map]. 2 255 39.199 T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 RAM_02100 38da39e2c78d34503c13ed7bf35e03d5 191 SUPERFAMILY SSF46689 11 81 3.04E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_02100 38da39e2c78d34503c13ed7bf35e03d5 191 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 63 7.7E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_02100 38da39e2c78d34503c13ed7bf35e03d5 191 Gene3D G3DSA:1.10.357.10 6 189 2.8E-31 T 13-10-2018 RAM_02100 38da39e2c78d34503c13ed7bf35e03d5 191 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 5.0E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_02100 38da39e2c78d34503c13ed7bf35e03d5 191 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 5.0E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_04955 8b2bd1d50129d8588e2d4768e184e181 263 Gene3D G3DSA:2.30.30.100 213 261 2.5E-16 T 13-10-2018 RAM_04955 8b2bd1d50129d8588e2d4768e184e181 263 Pfam PF02237 Biotin protein ligase C terminal domain 212 259 2.7E-6 T 13-10-2018 IPR003142 Biotin protein ligase, C-terminal GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RAM_04955 8b2bd1d50129d8588e2d4768e184e181 263 Pfam PF03099 Biotin/lipoate A/B protein ligase family 22 132 1.9E-10 T 13-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 RAM_04955 8b2bd1d50129d8588e2d4768e184e181 263 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 18 259 2.0E-40 T 13-10-2018 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RAM_04955 8b2bd1d50129d8588e2d4768e184e181 263 SUPERFAMILY SSF55681 16 196 6.55E-44 T 13-10-2018 RAM_04955 8b2bd1d50129d8588e2d4768e184e181 263 SUPERFAMILY SSF50037 215 259 2.15E-6 T 13-10-2018 IPR008988 Transcriptional repressor, C-terminal RAM_04955 8b2bd1d50129d8588e2d4768e184e181 263 Gene3D G3DSA:3.30.930.10 1 212 7.1E-56 T 13-10-2018 RAM_25255 546756ce5a802dc322b423349badb83c 325 Gene3D G3DSA:3.40.50.150 46 218 2.6E-55 T 13-10-2018 RAM_25255 546756ce5a802dc322b423349badb83c 325 Gene3D G3DSA:3.40.50.150 268 322 1.1E-8 T 13-10-2018 RAM_25255 546756ce5a802dc322b423349badb83c 325 SUPERFAMILY SSF53335 35 310 1.67E-11 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_25255 546756ce5a802dc322b423349badb83c 325 Hamap MF_02037 Histidine N-alpha-methyltransferase [egtD]. 6 322 57.331 T 13-10-2018 IPR032888 Histidine N-alpha-methyltransferase, Actinobacteria-type GO:0008276|GO:0052699 KEGG: 00340+2.1.1.44|MetaCyc: PWY-7255|MetaCyc: PWY-7550 RAM_25255 546756ce5a802dc322b423349badb83c 325 TIGRFAM TIGR03438 egtD_ergothio: dimethylhistidine N-methyltransferase 19 319 6.0E-114 T 13-10-2018 IPR035094 Histidine N-alpha-methyltransferase KEGG: 00340+2.1.1.44|MetaCyc: PWY-7255|MetaCyc: PWY-7550 RAM_25255 546756ce5a802dc322b423349badb83c 325 Pfam PF10017 Histidine-specific methyltransferase, SAM-dependent 19 321 6.9E-114 T 13-10-2018 IPR019257 Histidine-specific methyltransferase, SAM-dependent RAM_25255 546756ce5a802dc322b423349badb83c 325 PIRSF PIRSF018005 1 323 4.9E-131 T 13-10-2018 IPR017804 Methyltransferase EgtD-like GO:0008168 RAM_35120 9cce6aa4df19b1e8e7357ede471e4b9d 154 PIRSF PIRSF000239 1 152 5.1E-21 T 13-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 RAM_35120 9cce6aa4df19b1e8e7357ede471e4b9d 154 Gene3D G3DSA:3.40.30.10 1 153 7.5E-46 T 13-10-2018 RAM_35120 9cce6aa4df19b1e8e7357ede471e4b9d 154 SUPERFAMILY SSF52833 1 152 7.48E-42 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RAM_35120 9cce6aa4df19b1e8e7357ede471e4b9d 154 Pfam PF00578 AhpC/TSA family 6 130 4.5E-35 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 RAM_37660 f50ddd35c5d485928cf5b4bdc82e2a5f 198 Gene3D G3DSA:1.10.357.10 3 197 3.9E-26 T 13-10-2018 RAM_37660 f50ddd35c5d485928cf5b4bdc82e2a5f 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 8.8E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_37660 f50ddd35c5d485928cf5b4bdc82e2a5f 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 8.8E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_37660 f50ddd35c5d485928cf5b4bdc82e2a5f 198 ProSitePatterns PS01081 TetR-type HTH domain signature. 27 57 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RAM_37660 f50ddd35c5d485928cf5b4bdc82e2a5f 198 SUPERFAMILY SSF46689 4 86 4.69E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_37660 f50ddd35c5d485928cf5b4bdc82e2a5f 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 59 1.8E-12 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_09535 833d4ef56d48a80d7530d50716694379 410 SUPERFAMILY SSF103473 26 407 1.57E-41 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_09535 833d4ef56d48a80d7530d50716694379 410 Pfam PF07690 Major Facilitator Superfamily 33 250 1.2E-15 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_09535 833d4ef56d48a80d7530d50716694379 410 Gene3D G3DSA:1.20.1250.20 22 406 4.7E-35 T 13-10-2018 RAM_30910 9f4465bb063b6775264f3a5537d2f530 275 SMART SM00363 5 71 7.4E-6 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_30910 9f4465bb063b6775264f3a5537d2f530 275 Pfam PF01728 FtsJ-like methyltransferase 63 245 2.7E-21 T 13-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 RAM_30910 9f4465bb063b6775264f3a5537d2f530 275 SUPERFAMILY SSF53335 61 245 9.14E-22 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_30910 9f4465bb063b6775264f3a5537d2f530 275 TIGRFAM TIGR00478 tly: TlyA family rRNA methyltransferase/putative hemolysin 6 239 2.0E-60 T 13-10-2018 IPR004538 Haemolysin A /rRNA methyltransferase TlyA GO:0003723 RAM_30910 9f4465bb063b6775264f3a5537d2f530 275 SUPERFAMILY SSF55174 5 58 1.91E-11 T 13-10-2018 RAM_30910 9f4465bb063b6775264f3a5537d2f530 275 PIRSF PIRSF005578 1 264 1.5E-95 T 13-10-2018 IPR004538 Haemolysin A /rRNA methyltransferase TlyA GO:0003723 RAM_30910 9f4465bb063b6775264f3a5537d2f530 275 Gene3D G3DSA:3.40.50.150 65 273 1.4E-72 T 13-10-2018 RAM_30910 9f4465bb063b6775264f3a5537d2f530 275 Pfam PF01479 S4 domain 6 50 5.8E-8 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_30910 9f4465bb063b6775264f3a5537d2f530 275 Gene3D G3DSA:3.10.290.10 1 64 4.4E-16 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 RAM_18725 6f580ba167b43da99ecd698ca732924a 320 PIRSF PIRSF026534 3 320 1.1E-100 T 13-10-2018 IPR016840 Glycoside hydrolase, family 43, endo-1, 5-alpha-L-arabinosidase GO:0046558 RAM_18725 6f580ba167b43da99ecd698ca732924a 320 Pfam PF04616 Glycosyl hydrolases family 43 41 316 9.5E-50 T 13-10-2018 IPR006710 Glycoside hydrolase, family 43 GO:0004553|GO:0005975 RAM_18725 6f580ba167b43da99ecd698ca732924a 320 SUPERFAMILY SSF75005 18 318 3.71E-72 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily RAM_18725 6f580ba167b43da99ecd698ca732924a 320 Gene3D G3DSA:2.115.10.20 21 320 5.0E-83 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily RAM_07145 ed7ca0af7153ff6f60c81a1dcb23702b 379 Pfam PF05050 Methyltransferase FkbM domain 121 250 1.7E-7 T 13-10-2018 IPR006342 Methyltransferase FkbM RAM_07145 ed7ca0af7153ff6f60c81a1dcb23702b 379 Gene3D G3DSA:3.40.50.150 65 274 4.6E-13 T 13-10-2018 RAM_07145 ed7ca0af7153ff6f60c81a1dcb23702b 379 SUPERFAMILY SSF53335 76 236 7.41E-19 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_23275 a66be3c5ae1504a7a66dc01074811264 546 Gene3D G3DSA:3.40.50.970 1 171 5.2E-58 T 13-10-2018 RAM_23275 a66be3c5ae1504a7a66dc01074811264 546 Gene3D G3DSA:3.40.50.1220 177 347 1.7E-37 T 13-10-2018 RAM_23275 a66be3c5ae1504a7a66dc01074811264 546 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 1 161 6.1E-48 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RAM_23275 a66be3c5ae1504a7a66dc01074811264 546 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 186 312 7.7E-24 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 RAM_23275 a66be3c5ae1504a7a66dc01074811264 546 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 416 435 - T 13-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 RAM_23275 a66be3c5ae1504a7a66dc01074811264 546 SUPERFAMILY SSF52518 356 538 1.04E-46 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_23275 a66be3c5ae1504a7a66dc01074811264 546 SUPERFAMILY SSF52467 181 362 1.03E-34 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily RAM_23275 a66be3c5ae1504a7a66dc01074811264 546 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 380 528 1.3E-26 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RAM_23275 a66be3c5ae1504a7a66dc01074811264 546 Gene3D G3DSA:3.40.50.970 348 545 5.9E-50 T 13-10-2018 RAM_23275 a66be3c5ae1504a7a66dc01074811264 546 SUPERFAMILY SSF52518 1 167 2.06E-45 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_29875 d1535c7f41e0ba1fad0ca4543a867167 558 Pfam PF00400 WD domain, G-beta repeat 482 513 3.3E-5 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_29875 d1535c7f41e0ba1fad0ca4543a867167 558 Pfam PF00400 WD domain, G-beta repeat 352 387 0.019 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_29875 d1535c7f41e0ba1fad0ca4543a867167 558 Pfam PF00400 WD domain, G-beta repeat 402 428 0.0015 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_29875 d1535c7f41e0ba1fad0ca4543a867167 558 Pfam PF00400 WD domain, G-beta repeat 151 172 0.024 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_29875 d1535c7f41e0ba1fad0ca4543a867167 558 Pfam PF00400 WD domain, G-beta repeat 66 90 0.024 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_29875 d1535c7f41e0ba1fad0ca4543a867167 558 Gene3D G3DSA:2.130.10.10 448 532 1.4E-14 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RAM_29875 d1535c7f41e0ba1fad0ca4543a867167 558 Gene3D G3DSA:2.130.10.10 311 447 1.8E-22 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RAM_29875 d1535c7f41e0ba1fad0ca4543a867167 558 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 500 514 - T 13-10-2018 IPR019775 WD40 repeat, conserved site RAM_29875 d1535c7f41e0ba1fad0ca4543a867167 558 Gene3D G3DSA:2.130.10.10 1 192 1.5E-29 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RAM_29875 d1535c7f41e0ba1fad0ca4543a867167 558 SUPERFAMILY SSF50998 2 520 4.45E-50 T 13-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily RAM_29875 d1535c7f41e0ba1fad0ca4543a867167 558 Gene3D G3DSA:2.130.10.10 193 310 1.2E-11 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RAM_29875 d1535c7f41e0ba1fad0ca4543a867167 558 SMART SM00320 178 215 490.0 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_29875 d1535c7f41e0ba1fad0ca4543a867167 558 SMART SM00320 138 173 1.3 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_29875 d1535c7f41e0ba1fad0ca4543a867167 558 SMART SM00320 394 429 0.45 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_29875 d1535c7f41e0ba1fad0ca4543a867167 558 SMART SM00320 432 471 0.02 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_29875 d1535c7f41e0ba1fad0ca4543a867167 558 SMART SM00320 223 258 46.0 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_29875 d1535c7f41e0ba1fad0ca4543a867167 558 SMART SM00320 348 387 0.022 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_29875 d1535c7f41e0ba1fad0ca4543a867167 558 SMART SM00320 474 513 1.8E-5 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_29875 d1535c7f41e0ba1fad0ca4543a867167 558 SMART SM00320 9 48 0.54 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_29875 d1535c7f41e0ba1fad0ca4543a867167 558 SMART SM00320 51 90 0.0044 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_20660 d2d2395fc221e4005424a572b9af07ed 389 SUPERFAMILY SSF56601 41 386 2.15E-67 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_20660 d2d2395fc221e4005424a572b9af07ed 389 Gene3D G3DSA:3.40.710.10 40 376 1.8E-70 T 13-10-2018 RAM_20660 d2d2395fc221e4005424a572b9af07ed 389 Pfam PF00144 Beta-lactamase 43 375 5.9E-56 T 13-10-2018 IPR001466 Beta-lactamase-related RAM_13705 3e59bfbfcd439c4ca062d73f231381c8 462 Pfam PF01565 FAD binding domain 42 175 2.6E-30 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RAM_13705 3e59bfbfcd439c4ca062d73f231381c8 462 Gene3D G3DSA:3.40.462.20 208 421 3.9E-109 T 13-10-2018 RAM_13705 3e59bfbfcd439c4ca062d73f231381c8 462 SUPERFAMILY SSF56176 15 207 2.76E-53 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RAM_13705 3e59bfbfcd439c4ca062d73f231381c8 462 Gene3D G3DSA:3.30.465.10 109 448 3.9E-109 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 RAM_13705 3e59bfbfcd439c4ca062d73f231381c8 462 ProSitePatterns PS00862 Oxygen oxidoreductases covalent FAD-binding site. 42 75 - T 13-10-2018 IPR006093 Oxygen oxidoreductase covalent FAD-binding site GO:0016491|GO:0055114 RAM_13705 3e59bfbfcd439c4ca062d73f231381c8 462 Gene3D G3DSA:3.30.43.10 17 95 9.3E-30 T 13-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 RAM_13705 3e59bfbfcd439c4ca062d73f231381c8 462 Pfam PF08031 Berberine and berberine like 416 460 5.1E-14 T 13-10-2018 IPR012951 Berberine/berberine-like GO:0016491|GO:0050660|GO:0055114 RAM_31855 6104a83852e0b2b4c930613b20fc7363 369 SMART SM00922 130 235 2.5E-16 T 13-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal RAM_31855 6104a83852e0b2b4c930613b20fc7363 369 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 34 112 1.7E-4 T 13-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain RAM_31855 6104a83852e0b2b4c930613b20fc7363 369 SUPERFAMILY SSF54826 1 115 2.47E-16 T 13-10-2018 RAM_31855 6104a83852e0b2b4c930613b20fc7363 369 Pfam PF13378 Enolase C-terminal domain-like 135 362 7.0E-52 T 13-10-2018 IPR029065 Enolase C-terminal domain-like RAM_31855 6104a83852e0b2b4c930613b20fc7363 369 Gene3D G3DSA:3.20.20.120 109 369 4.1E-68 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RAM_31855 6104a83852e0b2b4c930613b20fc7363 369 SUPERFAMILY SSF51604 100 368 6.19E-56 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RAM_31855 6104a83852e0b2b4c930613b20fc7363 369 Gene3D G3DSA:3.30.390.10 1 108 1.2E-17 T 13-10-2018 IPR029017 Enolase-like, N-terminal RAM_25740 bb99b5f21760569684c587125363c6cf 470 SUPERFAMILY SSF48452 236 309 9.7E-9 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_25740 bb99b5f21760569684c587125363c6cf 470 SUPERFAMILY SSF48452 316 431 6.64E-16 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_25740 bb99b5f21760569684c587125363c6cf 470 Gene3D G3DSA:1.25.40.10 235 433 1.1E-56 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_25740 bb99b5f21760569684c587125363c6cf 470 Pfam PF13374 Tetratricopeptide repeat 239 277 0.0029 T 13-10-2018 RAM_25740 bb99b5f21760569684c587125363c6cf 470 Pfam PF13424 Tetratricopeptide repeat 364 438 8.6E-12 T 13-10-2018 RAM_25740 bb99b5f21760569684c587125363c6cf 470 Pfam PF13424 Tetratricopeptide repeat 286 354 5.5E-15 T 13-10-2018 RAM_42465 419dca65648ad8ffca3334c69a860644 325 Pfam PF03358 NADPH-dependent FMN reductase 3 143 7.5E-34 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 RAM_42465 419dca65648ad8ffca3334c69a860644 325 Gene3D G3DSA:3.10.450.50 184 325 3.2E-30 T 13-10-2018 RAM_42465 419dca65648ad8ffca3334c69a860644 325 Pfam PF13474 SnoaL-like domain 191 312 6.7E-18 T 13-10-2018 IPR037401 SnoaL-like domain RAM_42465 419dca65648ad8ffca3334c69a860644 325 SUPERFAMILY SSF54427 186 313 5.23E-23 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_42465 419dca65648ad8ffca3334c69a860644 325 SUPERFAMILY SSF52218 1 170 6.04E-36 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RAM_42465 419dca65648ad8ffca3334c69a860644 325 Gene3D G3DSA:3.40.50.360 2 179 1.8E-44 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RAM_13025 1fbc17c44f920b557cd4d0fae65bb848 253 SMART SM00345 32 89 2.2E-11 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_13025 1fbc17c44f920b557cd4d0fae65bb848 253 SMART SM00866 105 241 5.2E-24 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RAM_13025 1fbc17c44f920b557cd4d0fae65bb848 253 SUPERFAMILY SSF64288 77 248 2.67E-34 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RAM_13025 1fbc17c44f920b557cd4d0fae65bb848 253 Pfam PF07702 UTRA domain 109 240 2.9E-25 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RAM_13025 1fbc17c44f920b557cd4d0fae65bb848 253 SUPERFAMILY SSF46785 23 99 9.85E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_13025 1fbc17c44f920b557cd4d0fae65bb848 253 Gene3D G3DSA:3.40.1410.10 99 250 8.2E-31 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RAM_13025 1fbc17c44f920b557cd4d0fae65bb848 253 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 63 79 2.7E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_13025 1fbc17c44f920b557cd4d0fae65bb848 253 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 49 63 2.7E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_13025 1fbc17c44f920b557cd4d0fae65bb848 253 Gene3D G3DSA:1.10.10.10 24 90 7.7E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_13025 1fbc17c44f920b557cd4d0fae65bb848 253 Pfam PF00392 Bacterial regulatory proteins, gntR family 42 89 1.4E-14 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_40450 ec6d9b467116a9ccee74c79cb6c5285a 332 Gene3D G3DSA:3.40.50.720 104 293 4.4E-93 T 13-10-2018 RAM_40450 ec6d9b467116a9ccee74c79cb6c5285a 332 SUPERFAMILY SSF52283 41 134 1.02E-10 T 13-10-2018 RAM_40450 ec6d9b467116a9ccee74c79cb6c5285a 332 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 225 241 - T 13-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site RAM_40450 ec6d9b467116a9ccee74c79cb6c5285a 332 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 113 286 7.4E-52 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 RAM_40450 ec6d9b467116a9ccee74c79cb6c5285a 332 SUPERFAMILY SSF51735 106 285 8.4E-50 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_40450 ec6d9b467116a9ccee74c79cb6c5285a 332 Gene3D G3DSA:3.40.50.720 31 323 4.4E-93 T 13-10-2018 RAM_40135 a596a0773e6a2cd5be1c8e4ed15103fd 107 Pfam PF01527 Transposase 4 84 4.4E-12 T 13-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 RAM_40135 a596a0773e6a2cd5be1c8e4ed15103fd 107 Gene3D G3DSA:1.10.10.60 11 95 1.4E-7 T 13-10-2018 RAM_40135 a596a0773e6a2cd5be1c8e4ed15103fd 107 SUPERFAMILY SSF46689 5 97 9.14E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_28130 a596a0773e6a2cd5be1c8e4ed15103fd 107 Pfam PF01527 Transposase 4 84 4.4E-12 T 13-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 RAM_28130 a596a0773e6a2cd5be1c8e4ed15103fd 107 Gene3D G3DSA:1.10.10.60 11 95 1.4E-7 T 13-10-2018 RAM_28130 a596a0773e6a2cd5be1c8e4ed15103fd 107 SUPERFAMILY SSF46689 5 97 9.14E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_40645 a596a0773e6a2cd5be1c8e4ed15103fd 107 Pfam PF01527 Transposase 4 84 4.4E-12 T 13-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 RAM_40645 a596a0773e6a2cd5be1c8e4ed15103fd 107 Gene3D G3DSA:1.10.10.60 11 95 1.4E-7 T 13-10-2018 RAM_40645 a596a0773e6a2cd5be1c8e4ed15103fd 107 SUPERFAMILY SSF46689 5 97 9.14E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_37655 a596a0773e6a2cd5be1c8e4ed15103fd 107 Pfam PF01527 Transposase 4 84 4.4E-12 T 13-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 RAM_37655 a596a0773e6a2cd5be1c8e4ed15103fd 107 Gene3D G3DSA:1.10.10.60 11 95 1.4E-7 T 13-10-2018 RAM_37655 a596a0773e6a2cd5be1c8e4ed15103fd 107 SUPERFAMILY SSF46689 5 97 9.14E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_29810 a596a0773e6a2cd5be1c8e4ed15103fd 107 Pfam PF01527 Transposase 4 84 4.4E-12 T 13-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 RAM_29810 a596a0773e6a2cd5be1c8e4ed15103fd 107 Gene3D G3DSA:1.10.10.60 11 95 1.4E-7 T 13-10-2018 RAM_29810 a596a0773e6a2cd5be1c8e4ed15103fd 107 SUPERFAMILY SSF46689 5 97 9.14E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_07310 a596a0773e6a2cd5be1c8e4ed15103fd 107 Pfam PF01527 Transposase 4 84 4.4E-12 T 13-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 RAM_07310 a596a0773e6a2cd5be1c8e4ed15103fd 107 Gene3D G3DSA:1.10.10.60 11 95 1.4E-7 T 13-10-2018 RAM_07310 a596a0773e6a2cd5be1c8e4ed15103fd 107 SUPERFAMILY SSF46689 5 97 9.14E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_07370 a596a0773e6a2cd5be1c8e4ed15103fd 107 Pfam PF01527 Transposase 4 84 4.4E-12 T 13-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 RAM_07370 a596a0773e6a2cd5be1c8e4ed15103fd 107 Gene3D G3DSA:1.10.10.60 11 95 1.4E-7 T 13-10-2018 RAM_07370 a596a0773e6a2cd5be1c8e4ed15103fd 107 SUPERFAMILY SSF46689 5 97 9.14E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_18420 4849a4f748d7f215fc31d0d049e8c7d2 943 PRINTS PR00364 Disease resistance protein signature 366 380 2.4E-8 T 13-10-2018 RAM_18420 4849a4f748d7f215fc31d0d049e8c7d2 943 PRINTS PR00364 Disease resistance protein signature 287 302 2.4E-8 T 13-10-2018 RAM_18420 4849a4f748d7f215fc31d0d049e8c7d2 943 PRINTS PR00364 Disease resistance protein signature 454 468 2.4E-8 T 13-10-2018 RAM_18420 4849a4f748d7f215fc31d0d049e8c7d2 943 Pfam PF00486 Transcriptional regulatory protein, C terminal 15 71 2.0E-7 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_18420 4849a4f748d7f215fc31d0d049e8c7d2 943 Pfam PF13424 Tetratricopeptide repeat 789 860 1.7E-7 T 13-10-2018 RAM_18420 4849a4f748d7f215fc31d0d049e8c7d2 943 Pfam PF13424 Tetratricopeptide repeat 708 781 2.4E-9 T 13-10-2018 RAM_18420 4849a4f748d7f215fc31d0d049e8c7d2 943 Pfam PF03704 Bacterial transcriptional activator domain 93 235 3.0E-37 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_18420 4849a4f748d7f215fc31d0d049e8c7d2 943 SUPERFAMILY SSF52540 255 523 1.94E-27 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_18420 4849a4f748d7f215fc31d0d049e8c7d2 943 SUPERFAMILY SSF48452 682 813 7.59E-13 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_18420 4849a4f748d7f215fc31d0d049e8c7d2 943 Pfam PF00931 NB-ARC domain 283 472 8.2E-10 T 13-10-2018 IPR002182 NB-ARC GO:0043531 Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-6798695|Reactome: R-HSA-6803207|Reactome: R-HSA-8953750 RAM_18420 4849a4f748d7f215fc31d0d049e8c7d2 943 SUPERFAMILY SSF48452 88 252 5.18E-27 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_18420 4849a4f748d7f215fc31d0d049e8c7d2 943 SMART SM00862 7 86 6.4E-8 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_18420 4849a4f748d7f215fc31d0d049e8c7d2 943 SUPERFAMILY SSF46894 10 86 1.25E-11 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_18420 4849a4f748d7f215fc31d0d049e8c7d2 943 SMART SM01043 93 235 6.3E-42 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_18420 4849a4f748d7f215fc31d0d049e8c7d2 943 Gene3D G3DSA:1.10.10.10 1 89 1.0E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_18420 4849a4f748d7f215fc31d0d049e8c7d2 943 SMART SM00028 709 742 90.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_18420 4849a4f748d7f215fc31d0d049e8c7d2 943 SMART SM00028 869 902 0.68 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_18420 4849a4f748d7f215fc31d0d049e8c7d2 943 SMART SM00028 829 862 2.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_18420 4849a4f748d7f215fc31d0d049e8c7d2 943 SMART SM00028 749 782 35.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_18420 4849a4f748d7f215fc31d0d049e8c7d2 943 SMART SM00028 789 822 200.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_18420 4849a4f748d7f215fc31d0d049e8c7d2 943 Gene3D G3DSA:1.25.40.10 92 258 1.0E-43 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_18420 4849a4f748d7f215fc31d0d049e8c7d2 943 SUPERFAMILY SSF48452 784 905 2.75E-17 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_18420 4849a4f748d7f215fc31d0d049e8c7d2 943 Gene3D G3DSA:1.25.40.10 654 913 2.1E-40 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_45735 c957bb0ec0a945322a7b3e7632824057 143 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 9 90 2.4E-12 T 13-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RAM_45735 c957bb0ec0a945322a7b3e7632824057 143 Gene3D G3DSA:2.30.110.10 1 137 2.5E-29 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_45735 c957bb0ec0a945322a7b3e7632824057 143 SUPERFAMILY SSF50475 2 139 1.43E-24 T 13-10-2018 RAM_45735 c957bb0ec0a945322a7b3e7632824057 143 TIGRFAM TIGR03618 Rv1155_F420: PPOX class probable F420-dependent enzyme 12 137 4.1E-26 T 13-10-2018 IPR019920 F420-binding domain, putative RAM_00635 b89ed0e3552a8ee53c4db9bda7a77283 226 Gene3D G3DSA:3.40.50.1820 2 222 3.4E-35 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_00635 b89ed0e3552a8ee53c4db9bda7a77283 226 SUPERFAMILY SSF53474 3 220 4.24E-21 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_00635 b89ed0e3552a8ee53c4db9bda7a77283 226 Pfam PF12697 Alpha/beta hydrolase family 3 216 2.2E-17 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_23845 3753dee78157738679dd54b6937149de 169 SUPERFAMILY SSF160904 2 165 6.41E-34 T 13-10-2018 RAM_23845 3753dee78157738679dd54b6937149de 169 Pfam PF11706 CGNR zinc finger 124 166 1.7E-15 T 13-10-2018 IPR021005 Zinc finger, CGNR RAM_23845 3753dee78157738679dd54b6937149de 169 Gene3D G3DSA:1.10.3300.10 2 167 5.7E-42 T 13-10-2018 IPR023286 ABATE domain superfamily RAM_17745 a9bc87afc6dc85ef1737cd55a1c369ff 333 SUPERFAMILY SSF53850 44 262 6.54E-38 T 13-10-2018 RAM_17745 a9bc87afc6dc85ef1737cd55a1c369ff 333 SMART SM00062 47 283 0.0018 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RAM_17745 a9bc87afc6dc85ef1737cd55a1c369ff 333 Pfam PF13379 NMT1-like family 42 263 7.5E-27 T 13-10-2018 RAM_17745 a9bc87afc6dc85ef1737cd55a1c369ff 333 Gene3D G3DSA:3.40.190.10 157 331 1.1E-28 T 13-10-2018 RAM_17745 a9bc87afc6dc85ef1737cd55a1c369ff 333 Gene3D G3DSA:3.40.190.10 42 156 1.1E-15 T 13-10-2018 RAM_03770 7512557bf9c0d77a292309a1c9f01901 481 PIRSF PIRSF000538 3 472 2.2E-81 T 13-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 RAM_03770 7512557bf9c0d77a292309a1c9f01901 481 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 333 354 - T 13-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 RAM_03770 7512557bf9c0d77a292309a1c9f01901 481 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 6 230 9.0E-47 T 13-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 RAM_03770 7512557bf9c0d77a292309a1c9f01901 481 Gene3D G3DSA:3.30.420.40 2 231 1.9E-84 T 13-10-2018 RAM_03770 7512557bf9c0d77a292309a1c9f01901 481 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 123 135 - T 13-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 RAM_03770 7512557bf9c0d77a292309a1c9f01901 481 SUPERFAMILY SSF53067 233 425 9.91E-40 T 13-10-2018 RAM_03770 7512557bf9c0d77a292309a1c9f01901 481 SUPERFAMILY SSF53067 5 231 6.87E-50 T 13-10-2018 RAM_03770 7512557bf9c0d77a292309a1c9f01901 481 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 238 421 2.6E-22 T 13-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 RAM_03770 7512557bf9c0d77a292309a1c9f01901 481 Gene3D G3DSA:3.30.420.40 233 467 2.6E-65 T 13-10-2018 RAM_03770 7512557bf9c0d77a292309a1c9f01901 481 TIGRFAM TIGR01312 XylB: xylulokinase 8 441 8.7E-131 T 13-10-2018 IPR006000 Xylulokinase GO:0004856|GO:0005997 KEGG: 00040+2.7.1.17 RAM_04755 e71d9794c9a568180828f9cda47dc357 178 Pfam PF08044 Domain of unknown function (DUF1707) 9 61 9.2E-20 T 13-10-2018 IPR012551 Protein of unknown function DUF1707 RAM_47625 9a8a3c106d2cc08cdfe5fb0ebf98469f 891 Pfam PF00905 Penicillin binding protein transpeptidase domain 490 768 3.2E-24 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RAM_47625 9a8a3c106d2cc08cdfe5fb0ebf98469f 891 Gene3D G3DSA:1.10.3810.10 220 412 1.6E-53 T 13-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RAM_47625 9a8a3c106d2cc08cdfe5fb0ebf98469f 891 SUPERFAMILY SSF53955 215 414 3.37E-54 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily RAM_47625 9a8a3c106d2cc08cdfe5fb0ebf98469f 891 Pfam PF00912 Transglycosylase 235 397 2.9E-49 T 13-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RAM_47625 9a8a3c106d2cc08cdfe5fb0ebf98469f 891 Gene3D G3DSA:3.40.710.10 427 828 6.0E-85 T 13-10-2018 RAM_47625 9a8a3c106d2cc08cdfe5fb0ebf98469f 891 SUPERFAMILY SSF56601 382 827 1.63E-63 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_35710 563a4b00d86ae5ba2a5e8e3f1e104636 314 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 3.4E-22 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_35710 563a4b00d86ae5ba2a5e8e3f1e104636 314 SUPERFAMILY SSF53850 92 289 1.07E-27 T 13-10-2018 RAM_35710 563a4b00d86ae5ba2a5e8e3f1e104636 314 Gene3D G3DSA:3.40.190.10 162 264 1.6E-37 T 13-10-2018 RAM_35710 563a4b00d86ae5ba2a5e8e3f1e104636 314 Gene3D G3DSA:1.10.10.10 2 84 9.4E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_35710 563a4b00d86ae5ba2a5e8e3f1e104636 314 Pfam PF03466 LysR substrate binding domain 92 280 5.0E-30 T 13-10-2018 IPR005119 LysR, substrate-binding RAM_35710 563a4b00d86ae5ba2a5e8e3f1e104636 314 SUPERFAMILY SSF46785 4 84 4.81E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_35710 563a4b00d86ae5ba2a5e8e3f1e104636 314 Gene3D G3DSA:3.40.190.10 88 278 1.6E-37 T 13-10-2018 RAM_35710 563a4b00d86ae5ba2a5e8e3f1e104636 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 4.5E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_35710 563a4b00d86ae5ba2a5e8e3f1e104636 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 4.5E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_35710 563a4b00d86ae5ba2a5e8e3f1e104636 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 4.5E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_23515 193b3cae7dc23ceef5edce09368fcce1 122 Pfam PF13564 DoxX-like family 7 115 1.3E-28 T 13-10-2018 IPR032808 DoxX family RAM_07465 7e815bc995f492e5e3d76be8d682df3e 304 Gene3D G3DSA:3.60.15.10 5 295 3.4E-76 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_07465 7e815bc995f492e5e3d76be8d682df3e 304 Hamap MF_01818 Ribonuclease BN [rbn]. 4 295 30.5 T 13-10-2018 IPR013471 Ribonuclease Z/BN GO:0016891|GO:0042779 RAM_07465 7e815bc995f492e5e3d76be8d682df3e 304 SUPERFAMILY SSF56281 5 294 4.72E-64 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_07465 7e815bc995f492e5e3d76be8d682df3e 304 Pfam PF00753 Metallo-beta-lactamase superfamily 21 116 1.8E-14 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_07465 7e815bc995f492e5e3d76be8d682df3e 304 Pfam PF12706 Beta-lactamase superfamily domain 193 262 5.6E-9 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_33685 96fb44914ef8995d4fd791f5d57746fe 597 SUPERFAMILY SSF52518 3 185 1.4E-47 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_33685 96fb44914ef8995d4fd791f5d57746fe 597 SUPERFAMILY SSF52467 190 358 1.29E-41 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily RAM_33685 96fb44914ef8995d4fd791f5d57746fe 597 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 200 329 5.5E-26 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 RAM_33685 96fb44914ef8995d4fd791f5d57746fe 597 SUPERFAMILY SSF52518 366 565 1.45E-52 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_33685 96fb44914ef8995d4fd791f5d57746fe 597 Gene3D G3DSA:3.40.50.1220 187 343 3.7E-41 T 13-10-2018 RAM_33685 96fb44914ef8995d4fd791f5d57746fe 597 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 389 544 5.9E-28 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RAM_33685 96fb44914ef8995d4fd791f5d57746fe 597 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4 173 7.8E-46 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RAM_33685 96fb44914ef8995d4fd791f5d57746fe 597 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 426 445 - T 13-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 RAM_33685 96fb44914ef8995d4fd791f5d57746fe 597 Gene3D G3DSA:3.40.50.970 1 178 1.2E-53 T 13-10-2018 RAM_33685 96fb44914ef8995d4fd791f5d57746fe 597 Gene3D G3DSA:3.40.50.970 357 585 2.1E-57 T 13-10-2018 RAM_43100 cb1f4adda5781c799388c3344211e665 227 Pfam PF01325 Iron dependent repressor, N-terminal DNA binding domain 10 66 3.9E-16 T 13-10-2018 IPR022687 DTXR-type HTH domain GO:0003677 RAM_43100 cb1f4adda5781c799388c3344211e665 227 SMART SM00899 149 226 3.0E-18 T 13-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 RAM_43100 cb1f4adda5781c799388c3344211e665 227 Pfam PF02742 Iron dependent repressor, metal binding and dimerisation domain 69 137 7.1E-28 T 13-10-2018 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 RAM_43100 cb1f4adda5781c799388c3344211e665 227 Pfam PF04023 FeoA domain 151 225 1.6E-19 T 13-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 RAM_43100 cb1f4adda5781c799388c3344211e665 227 SUPERFAMILY SSF46785 9 68 1.47E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_43100 cb1f4adda5781c799388c3344211e665 227 SMART SM00529 30 129 7.9E-39 T 13-10-2018 IPR022689 Iron dependent repressor GO:0003700|GO:0006355|GO:0046914 RAM_43100 cb1f4adda5781c799388c3344211e665 227 Gene3D G3DSA:2.30.30.90 150 227 6.7E-12 T 13-10-2018 IPR038157 Ferrous iron transporter, core domain RAM_43100 cb1f4adda5781c799388c3344211e665 227 SUPERFAMILY SSF50037 151 225 3.66E-8 T 13-10-2018 IPR008988 Transcriptional repressor, C-terminal RAM_43100 cb1f4adda5781c799388c3344211e665 227 SUPERFAMILY SSF47979 69 142 6.28E-24 T 13-10-2018 IPR036421 Iron dependent repressor, metal binding and dimerisation domain superfamily GO:0046914|GO:0046983 RAM_43100 cb1f4adda5781c799388c3344211e665 227 Gene3D G3DSA:1.10.10.10 7 76 1.2E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_43100 cb1f4adda5781c799388c3344211e665 227 Gene3D G3DSA:1.10.60.10 78 144 9.7E-27 T 13-10-2018 IPR036421 Iron dependent repressor, metal binding and dimerisation domain superfamily GO:0046914|GO:0046983 RAM_42085 d5906841041e8333daa51be7ab8081ae 529 Gene3D G3DSA:3.40.190.10 42 509 5.5E-92 T 13-10-2018 RAM_42085 d5906841041e8333daa51be7ab8081ae 529 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 76 449 1.8E-56 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain RAM_42085 d5906841041e8333daa51be7ab8081ae 529 Gene3D G3DSA:3.10.105.10 289 499 5.5E-92 T 13-10-2018 RAM_42085 d5906841041e8333daa51be7ab8081ae 529 Gene3D G3DSA:3.90.76.10 61 188 5.5E-92 T 13-10-2018 RAM_42085 d5906841041e8333daa51be7ab8081ae 529 SUPERFAMILY SSF53850 28 524 6.42E-90 T 13-10-2018 RAM_42085 d5906841041e8333daa51be7ab8081ae 529 PIRSF PIRSF002741 1 517 1.0E-63 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RAM_30970 546b477a481225667de840b6294733f9 308 Gene3D G3DSA:3.40.50.1370 130 290 1.1E-118 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 RAM_30970 546b477a481225667de840b6294733f9 308 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 3 303 1.3E-115 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 RAM_30970 546b477a481225667de840b6294733f9 308 PRINTS PR00102 Ornithine carbamoyltransferase signature 282 293 3.7E-29 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 RAM_30970 546b477a481225667de840b6294733f9 308 PRINTS PR00102 Ornithine carbamoyltransferase signature 116 130 3.7E-29 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 RAM_30970 546b477a481225667de840b6294733f9 308 PRINTS PR00102 Ornithine carbamoyltransferase signature 76 89 3.7E-29 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 RAM_30970 546b477a481225667de840b6294733f9 308 PRINTS PR00102 Ornithine carbamoyltransferase signature 43 57 3.7E-29 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 RAM_30970 546b477a481225667de840b6294733f9 308 PRINTS PR00102 Ornithine carbamoyltransferase signature 220 230 3.7E-29 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 RAM_30970 546b477a481225667de840b6294733f9 308 SUPERFAMILY SSF53671 2 304 3.27E-101 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 RAM_30970 546b477a481225667de840b6294733f9 308 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 147 301 1.1E-52 T 13-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 RAM_30970 546b477a481225667de840b6294733f9 308 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 268 291 1.6E-26 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RAM_30970 546b477a481225667de840b6294733f9 308 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 127 138 1.6E-26 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RAM_30970 546b477a481225667de840b6294733f9 308 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 256 265 1.6E-26 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RAM_30970 546b477a481225667de840b6294733f9 308 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 45 64 1.6E-26 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RAM_30970 546b477a481225667de840b6294733f9 308 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 2 304 77.61 T 13-10-2018 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 RAM_30970 546b477a481225667de840b6294733f9 308 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 3 140 4.2E-48 T 13-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 RAM_30970 546b477a481225667de840b6294733f9 308 Gene3D G3DSA:3.40.50.1370 9 300 1.1E-118 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 RAM_30970 546b477a481225667de840b6294733f9 308 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 45 52 - T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RAM_02580 5e31f6efaa1d8da62a978068f49df6d9 157 Gene3D G3DSA:1.10.10.10 2 52 1.0E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_02580 5e31f6efaa1d8da62a978068f49df6d9 157 SMART SM00344 1 108 1.1E-36 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RAM_02580 5e31f6efaa1d8da62a978068f49df6d9 157 ProSitePatterns PS00519 AsnC-type HTH domain signature. 19 45 - T 13-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site RAM_02580 5e31f6efaa1d8da62a978068f49df6d9 157 SUPERFAMILY SSF54909 61 143 1.23E-17 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_02580 5e31f6efaa1d8da62a978068f49df6d9 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 47 2.0E-13 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_02580 5e31f6efaa1d8da62a978068f49df6d9 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 28 2.0E-13 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_02580 5e31f6efaa1d8da62a978068f49df6d9 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 1 17 2.0E-13 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_02580 5e31f6efaa1d8da62a978068f49df6d9 157 Pfam PF01037 Lrp/AsnC ligand binding domain 67 138 1.5E-18 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RAM_02580 5e31f6efaa1d8da62a978068f49df6d9 157 Pfam PF13404 AsnC-type helix-turn-helix domain 2 42 1.2E-16 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_02580 5e31f6efaa1d8da62a978068f49df6d9 157 Gene3D G3DSA:3.30.70.920 54 135 1.3E-23 T 13-10-2018 RAM_02580 5e31f6efaa1d8da62a978068f49df6d9 157 SUPERFAMILY SSF46785 1 60 2.13E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_19720 790330eef3cb5a9bbd2e426c3ca0b96e 324 SMART SM00342 237 320 8.8E-23 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_19720 790330eef3cb5a9bbd2e426c3ca0b96e 324 SUPERFAMILY SSF52317 5 201 2.24E-15 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_19720 790330eef3cb5a9bbd2e426c3ca0b96e 324 Gene3D G3DSA:1.10.10.60 218 324 4.3E-23 T 13-10-2018 RAM_19720 790330eef3cb5a9bbd2e426c3ca0b96e 324 Pfam PF12833 Helix-turn-helix domain 243 321 8.9E-21 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_19720 790330eef3cb5a9bbd2e426c3ca0b96e 324 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 274 316 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RAM_19720 790330eef3cb5a9bbd2e426c3ca0b96e 324 Gene3D G3DSA:3.40.50.880 1 209 5.8E-19 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_19720 790330eef3cb5a9bbd2e426c3ca0b96e 324 SUPERFAMILY SSF46689 273 322 1.39E-9 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_20835 7dc397b6ea2e73c1e750f8f6524f4eba 332 SUPERFAMILY SSF47413 11 70 1.31E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_20835 7dc397b6ea2e73c1e750f8f6524f4eba 332 Pfam PF13377 Periplasmic binding protein-like domain 193 329 8.2E-22 T 13-10-2018 RAM_20835 7dc397b6ea2e73c1e750f8f6524f4eba 332 Gene3D G3DSA:3.40.50.2300 73 315 1.3E-57 T 13-10-2018 RAM_20835 7dc397b6ea2e73c1e750f8f6524f4eba 332 Gene3D G3DSA:3.40.50.2300 169 299 1.3E-57 T 13-10-2018 RAM_20835 7dc397b6ea2e73c1e750f8f6524f4eba 332 SUPERFAMILY SSF53822 69 318 1.59E-51 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_20835 7dc397b6ea2e73c1e750f8f6524f4eba 332 Pfam PF00356 Bacterial regulatory proteins, lacI family 14 59 5.6E-15 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_20835 7dc397b6ea2e73c1e750f8f6524f4eba 332 Gene3D G3DSA:1.10.260.40 7 69 8.9E-23 T 13-10-2018 RAM_20835 7dc397b6ea2e73c1e750f8f6524f4eba 332 SMART SM00354 12 82 3.2E-28 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_20835 7dc397b6ea2e73c1e750f8f6524f4eba 332 ProSitePatterns PS00356 LacI-type HTH domain signature. 15 33 - T 13-10-2018 RAM_00525 fa94137dcecb5643cf575872cce22b60 252 SUPERFAMILY SSF51735 7 248 6.02E-57 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_00525 fa94137dcecb5643cf575872cce22b60 252 Pfam PF00106 short chain dehydrogenase 7 201 1.7E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_00525 fa94137dcecb5643cf575872cce22b60 252 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 193 5.1E-4 T 13-10-2018 RAM_00525 fa94137dcecb5643cf575872cce22b60 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 213 233 1.2E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_00525 fa94137dcecb5643cf575872cce22b60 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 1.2E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_00525 fa94137dcecb5643cf575872cce22b60 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.2E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_00525 fa94137dcecb5643cf575872cce22b60 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 1.2E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_00525 fa94137dcecb5643cf575872cce22b60 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 75 86 1.2E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_00525 fa94137dcecb5643cf575872cce22b60 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 1.2E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_00525 fa94137dcecb5643cf575872cce22b60 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 75 86 6.3E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_00525 fa94137dcecb5643cf575872cce22b60 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 6.3E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_00525 fa94137dcecb5643cf575872cce22b60 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 6.3E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_00525 fa94137dcecb5643cf575872cce22b60 252 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_00525 fa94137dcecb5643cf575872cce22b60 252 Gene3D G3DSA:3.40.50.720 1 252 3.7E-65 T 13-10-2018 RAM_40960 e2db413a40f88c5b3b1ab78893bf4938 308 Gene3D G3DSA:2.60.200.40 136 297 5.8E-16 T 13-10-2018 RAM_40960 e2db413a40f88c5b3b1ab78893bf4938 308 SUPERFAMILY SSF111331 1 308 5.67E-52 T 13-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily RAM_40960 e2db413a40f88c5b3b1ab78893bf4938 308 SMART SM00046 2 136 2.7E-15 T 13-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 RAM_40960 e2db413a40f88c5b3b1ab78893bf4938 308 Pfam PF00781 Diacylglycerol kinase catalytic domain 3 121 1.6E-26 T 13-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 RAM_40960 e2db413a40f88c5b3b1ab78893bf4938 308 Gene3D G3DSA:3.40.50.10330 1 130 1.6E-33 T 13-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 RAM_07035 d376b30a38bad12f80815f42e94d2bfb 399 SUPERFAMILY SSF55874 284 396 4.66E-15 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_07035 d376b30a38bad12f80815f42e94d2bfb 399 Pfam PF13796 Putative sensor 14 180 3.3E-25 T 13-10-2018 IPR025828 Putative sensor domain RAM_07035 d376b30a38bad12f80815f42e94d2bfb 399 Pfam PF07730 Histidine kinase 209 275 8.3E-14 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_07035 d376b30a38bad12f80815f42e94d2bfb 399 Gene3D G3DSA:3.30.565.10 277 397 4.6E-25 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_07035 d376b30a38bad12f80815f42e94d2bfb 399 SMART SM00387 309 399 2.1E-8 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_11450 338007e1758903f56ec966b322a67d18 236 SMART SM00421 162 219 1.1E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_11450 338007e1758903f56ec966b322a67d18 236 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 195 207 4.0E-7 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_11450 338007e1758903f56ec966b322a67d18 236 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 195 4.0E-7 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_11450 338007e1758903f56ec966b322a67d18 236 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 165 179 4.0E-7 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_11450 338007e1758903f56ec966b322a67d18 236 SUPERFAMILY SSF46894 156 225 2.07E-15 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_11450 338007e1758903f56ec966b322a67d18 236 Gene3D G3DSA:1.10.10.10 154 224 1.3E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_11450 338007e1758903f56ec966b322a67d18 236 SMART SM00448 21 131 1.0E-14 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_11450 338007e1758903f56ec966b322a67d18 236 Gene3D G3DSA:3.40.50.2300 20 153 3.9E-17 T 13-10-2018 RAM_11450 338007e1758903f56ec966b322a67d18 236 Pfam PF00072 Response regulator receiver domain 23 131 1.3E-14 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_11450 338007e1758903f56ec966b322a67d18 236 SUPERFAMILY SSF52172 21 147 8.25E-20 T 13-10-2018 IPR011006 CheY-like superfamily RAM_11450 338007e1758903f56ec966b322a67d18 236 Pfam PF00196 Bacterial regulatory proteins, luxR family 164 215 1.9E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_10110 b0c41096cb4ab463a185e815a0e295ad 444 SUPERFAMILY SSF55103 223 432 4.58E-7 T 13-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 RAM_10110 b0c41096cb4ab463a185e815a0e295ad 444 Pfam PF01565 FAD binding domain 54 182 1.0E-24 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RAM_10110 b0c41096cb4ab463a185e815a0e295ad 444 Gene3D G3DSA:3.30.465.40 20 236 3.7E-36 T 13-10-2018 RAM_10110 b0c41096cb4ab463a185e815a0e295ad 444 SUPERFAMILY SSF56176 4 219 1.12E-36 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RAM_45960 37dd3dc9e247e5632691af93f151ccd2 260 Pfam PF13460 NAD(P)H-binding 7 164 1.6E-10 T 13-10-2018 IPR016040 NAD(P)-binding domain RAM_45960 37dd3dc9e247e5632691af93f151ccd2 260 Gene3D G3DSA:3.90.25.10 118 246 1.0E-46 T 13-10-2018 RAM_45960 37dd3dc9e247e5632691af93f151ccd2 260 Gene3D G3DSA:3.40.50.720 4 244 1.0E-46 T 13-10-2018 RAM_45960 37dd3dc9e247e5632691af93f151ccd2 260 SUPERFAMILY SSF51735 3 253 2.4E-40 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_31025 83283b4bafe63b851b0e35037e8423bf 353 Gene3D G3DSA:3.30.930.10 22 351 9.3E-107 T 13-10-2018 RAM_31025 83283b4bafe63b851b0e35037e8423bf 353 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 36 102 2.3E-17 T 13-10-2018 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 RAM_31025 83283b4bafe63b851b0e35037e8423bf 353 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 23 349 44.352 T 13-10-2018 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 RAM_31025 83283b4bafe63b851b0e35037e8423bf 353 Pfam PF01409 tRNA synthetases class II core domain (F) 107 346 1.8E-98 T 13-10-2018 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 RAM_31025 83283b4bafe63b851b0e35037e8423bf 353 SUPERFAMILY SSF46589 29 113 4.24E-15 T 13-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 RAM_31025 83283b4bafe63b851b0e35037e8423bf 353 SUPERFAMILY SSF55681 107 346 6.3E-77 T 13-10-2018 RAM_31025 83283b4bafe63b851b0e35037e8423bf 353 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 58 345 1.7E-88 T 13-10-2018 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 RAM_21475 a2693d0f52ca4be7a5fe88e8316c7506 395 SUPERFAMILY SSF50447 206 302 7.27E-26 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RAM_21475 a2693d0f52ca4be7a5fe88e8316c7506 395 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 394 6.5E-178 T 13-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 RAM_21475 a2693d0f52ca4be7a5fe88e8316c7506 395 Pfam PF00009 Elongation factor Tu GTP binding domain 10 202 4.6E-53 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_21475 a2693d0f52ca4be7a5fe88e8316c7506 395 Gene3D G3DSA:2.40.30.10 208 335 9.0E-45 T 13-10-2018 RAM_21475 a2693d0f52ca4be7a5fe88e8316c7506 395 SUPERFAMILY SSF50465 300 394 6.62E-26 T 13-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal RAM_21475 a2693d0f52ca4be7a5fe88e8316c7506 395 SUPERFAMILY SSF52540 7 219 2.51E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_21475 a2693d0f52ca4be7a5fe88e8316c7506 395 Pfam PF03143 Elongation factor Tu C-terminal domain 299 393 1.7E-20 T 13-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal RAM_21475 a2693d0f52ca4be7a5fe88e8316c7506 395 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 14 146 1.1E-13 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 RAM_21475 a2693d0f52ca4be7a5fe88e8316c7506 395 Pfam PF03144 Elongation factor Tu domain 2 226 295 2.4E-12 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 RAM_21475 a2693d0f52ca4be7a5fe88e8316c7506 395 Gene3D G3DSA:2.40.30.10 339 394 1.3E-14 T 13-10-2018 RAM_21475 a2693d0f52ca4be7a5fe88e8316c7506 395 PRINTS PR00315 GTP-binding elongation factor signature 14 27 1.0E-23 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_21475 a2693d0f52ca4be7a5fe88e8316c7506 395 PRINTS PR00315 GTP-binding elongation factor signature 95 106 1.0E-23 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_21475 a2693d0f52ca4be7a5fe88e8316c7506 395 PRINTS PR00315 GTP-binding elongation factor signature 79 89 1.0E-23 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_21475 a2693d0f52ca4be7a5fe88e8316c7506 395 PRINTS PR00315 GTP-binding elongation factor signature 59 67 1.0E-23 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_21475 a2693d0f52ca4be7a5fe88e8316c7506 395 PRINTS PR00315 GTP-binding elongation factor signature 132 141 1.0E-23 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_21475 a2693d0f52ca4be7a5fe88e8316c7506 395 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 395 52.573 T 13-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 RAM_21475 a2693d0f52ca4be7a5fe88e8316c7506 395 Gene3D G3DSA:3.40.50.300 2 204 3.9E-64 T 13-10-2018 RAM_40475 249a58c1ac712942207f8f1d52ca2660 352 TIGRFAM TIGR02089 TTC: tartrate dehydrogenase 3 351 4.6E-151 T 13-10-2018 IPR011829 Tartrate dehydrogenase GO:0016616|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.93|KEGG: 00650+1.1.1.83 RAM_40475 249a58c1ac712942207f8f1d52ca2660 352 SUPERFAMILY SSF53659 3 351 4.14E-114 T 13-10-2018 RAM_40475 249a58c1ac712942207f8f1d52ca2660 352 SMART SM01329 5 347 3.7E-170 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 RAM_40475 249a58c1ac712942207f8f1d52ca2660 352 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 240 259 - T 13-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 RAM_40475 249a58c1ac712942207f8f1d52ca2660 352 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 6 345 2.5E-89 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 RAM_40475 249a58c1ac712942207f8f1d52ca2660 352 Gene3D G3DSA:3.40.718.10 1 352 4.3E-129 T 13-10-2018 RAM_44655 d8d95afb9e0c0dc91ebc0ece61d1ed50 289 Gene3D G3DSA:1.10.1670.10 6 207 4.6E-68 T 13-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 RAM_44655 d8d95afb9e0c0dc91ebc0ece61d1ed50 289 SMART SM00478 35 187 7.7E-39 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 RAM_44655 d8d95afb9e0c0dc91ebc0ece61d1ed50 289 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 31 144 2.1E-14 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 RAM_44655 d8d95afb9e0c0dc91ebc0ece61d1ed50 289 Pfam PF00633 Helix-hairpin-helix motif 96 124 6.4E-7 T 13-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 RAM_44655 d8d95afb9e0c0dc91ebc0ece61d1ed50 289 Gene3D G3DSA:1.10.340.30 16 128 4.6E-68 T 13-10-2018 RAM_44655 d8d95afb9e0c0dc91ebc0ece61d1ed50 289 SUPERFAMILY SSF48150 3 215 4.4E-63 T 13-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 RAM_44655 d8d95afb9e0c0dc91ebc0ece61d1ed50 289 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 189 205 2.0E-4 T 13-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 RAM_32300 5a703634cfdaf922d185258bf65ee84c 534 SUPERFAMILY SSF53300 336 525 4.15E-20 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RAM_32300 5a703634cfdaf922d185258bf65ee84c 534 Gene3D G3DSA:3.40.50.410 337 528 7.8E-28 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RAM_32300 5a703634cfdaf922d185258bf65ee84c 534 Pfam PF00092 von Willebrand factor type A domain 339 524 2.5E-10 T 13-10-2018 IPR002035 von Willebrand factor, type A RAM_32300 5a703634cfdaf922d185258bf65ee84c 534 SMART SM00327 334 522 5.8E-13 T 13-10-2018 IPR002035 von Willebrand factor, type A RAM_32300 5a703634cfdaf922d185258bf65ee84c 534 Pfam PF13531 Bacterial extracellular solute-binding protein 37 289 3.7E-19 T 13-10-2018 RAM_39885 8d13cbd23362842281255bd8fe37fa8a 208 PIRSF PIRSF006324 1 208 3.4E-56 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RAM_39885 8d13cbd23362842281255bd8fe37fa8a 208 Pfam PF01810 LysE type translocator 16 207 1.8E-38 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RAM_46485 8b510079eca28fb5e40b4de497c101b2 254 SUPERFAMILY SSF161098 21 215 1.11E-39 T 13-10-2018 IPR035906 MetI-like superfamily RAM_46485 8b510079eca28fb5e40b4de497c101b2 254 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 21 119 2.9E-21 T 13-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 RAM_46485 8b510079eca28fb5e40b4de497c101b2 254 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 40 228 8.5E-24 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_46485 8b510079eca28fb5e40b4de497c101b2 254 Gene3D G3DSA:1.10.3720.10 8 232 2.1E-50 T 13-10-2018 IPR035906 MetI-like superfamily RAM_37305 f6f583c6c1661f183455bcfe5a039be7 218 SUPERFAMILY SSF46785 10 101 1.66E-10 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_37305 f6f583c6c1661f183455bcfe5a039be7 218 SUPERFAMILY SSF48008 83 216 1.18E-24 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_37305 f6f583c6c1661f183455bcfe5a039be7 218 Pfam PF07729 FCD domain 86 207 3.9E-17 T 13-10-2018 IPR011711 GntR, C-terminal RAM_37305 f6f583c6c1661f183455bcfe5a039be7 218 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 76 1.1E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_37305 f6f583c6c1661f183455bcfe5a039be7 218 Gene3D G3DSA:1.20.120.530 80 218 7.9E-25 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_37305 f6f583c6c1661f183455bcfe5a039be7 218 SMART SM00345 18 76 0.0035 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_37305 f6f583c6c1661f183455bcfe5a039be7 218 SMART SM00895 86 208 2.1E-13 T 13-10-2018 IPR011711 GntR, C-terminal RAM_37305 f6f583c6c1661f183455bcfe5a039be7 218 Gene3D G3DSA:1.10.10.10 4 77 3.0E-11 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_03050 dfa36b6ee81b32d298f0627ee687b3f7 239 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 225 1.5E-100 T 13-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 RAM_03050 dfa36b6ee81b32d298f0627ee687b3f7 239 Gene3D G3DSA:3.40.50.790 68 159 2.0E-80 T 13-10-2018 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich RAM_03050 dfa36b6ee81b32d298f0627ee687b3f7 239 Gene3D G3DSA:3.30.190.20 25 225 2.0E-80 T 13-10-2018 RAM_03050 dfa36b6ee81b32d298f0627ee687b3f7 239 PIRSF PIRSF002155 1 226 1.8E-73 T 13-10-2018 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_03050 dfa36b6ee81b32d298f0627ee687b3f7 239 ProSitePatterns PS01199 Ribosomal protein L1 signature. 121 139 - T 13-10-2018 IPR023673 Ribosomal protein L1, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_03050 dfa36b6ee81b32d298f0627ee687b3f7 239 SUPERFAMILY SSF56808 6 225 3.79E-80 T 13-10-2018 IPR023674 Ribosomal protein L1-like RAM_03050 dfa36b6ee81b32d298f0627ee687b3f7 239 Pfam PF00687 Ribosomal protein L1p/L10e family 31 220 3.9E-50 T 13-10-2018 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein RAM_03050 dfa36b6ee81b32d298f0627ee687b3f7 239 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 229 41.86 T 13-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 RAM_05805 c1bd5bd34c8ade5bcfa69ee9d5bc4553 430 Pfam PF01882 Protein of unknown function DUF58 186 271 9.9E-21 T 13-10-2018 IPR002881 Domain of unknown function DUF58 RAM_05805 c1bd5bd34c8ade5bcfa69ee9d5bc4553 430 Pfam PF01345 Domain of unknown function DUF11 57 126 3.9E-7 T 13-10-2018 IPR001434 Domain of unknown function DUF11 RAM_21740 d4fa851a8c291067ad7b0e99ce95dc95 436 PIRSF PIRSF000124 3 430 3.0E-118 T 13-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 RAM_21740 d4fa851a8c291067ad7b0e99ce95dc95 436 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 317 415 7.1E-26 T 13-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 RAM_21740 d4fa851a8c291067ad7b0e99ce95dc95 436 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 197 288 5.7E-34 T 13-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 RAM_21740 d4fa851a8c291067ad7b0e99ce95dc95 436 Gene3D G3DSA:1.20.5.100 196 226 4.7E-13 T 13-10-2018 RAM_21740 d4fa851a8c291067ad7b0e99ce95dc95 436 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 4 411 1.0E-122 T 13-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 RAM_21740 d4fa851a8c291067ad7b0e99ce95dc95 436 SMART SM00984 316 415 4.3E-33 T 13-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 RAM_21740 d4fa851a8c291067ad7b0e99ce95dc95 436 SUPERFAMILY SSF51735 4 190 3.57E-44 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_21740 d4fa851a8c291067ad7b0e99ce95dc95 436 PIRSF PIRSF500134 3 432 6.9E-136 T 13-10-2018 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|MetaCyc: PWY-7820 RAM_21740 d4fa851a8c291067ad7b0e99ce95dc95 436 Gene3D G3DSA:3.40.50.720 1 194 1.5E-59 T 13-10-2018 RAM_21740 d4fa851a8c291067ad7b0e99ce95dc95 436 SUPERFAMILY SSF52413 308 424 2.22E-30 T 13-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 RAM_21740 d4fa851a8c291067ad7b0e99ce95dc95 436 Gene3D G3DSA:3.40.50.720 227 436 3.4E-66 T 13-10-2018 RAM_21740 d4fa851a8c291067ad7b0e99ce95dc95 436 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 4 174 2.5E-49 T 13-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 RAM_21740 d4fa851a8c291067ad7b0e99ce95dc95 436 SUPERFAMILY SSF48179 197 293 3.23E-29 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RAM_08835 8e50ff6fcb6941290a594a3788eb4800 218 Pfam PF12900 Pyridoxamine 5'-phosphate oxidase 20 162 1.0E-38 T 13-10-2018 IPR024747 Pyridoxamine 5'-phosphate oxidase-related RAM_08835 8e50ff6fcb6941290a594a3788eb4800 218 Gene3D G3DSA:2.30.110.10 2 218 2.2E-67 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_08835 8e50ff6fcb6941290a594a3788eb4800 218 SUPERFAMILY SSF50475 2 185 4.42E-51 T 13-10-2018 RAM_14800 20d86500fbc597efbfb0656593a15dad 328 Pfam PF13411 MerR HTH family regulatory protein 5 73 1.3E-16 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_14800 20d86500fbc597efbfb0656593a15dad 328 SUPERFAMILY SSF46955 5 108 3.04E-23 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily RAM_14800 20d86500fbc597efbfb0656593a15dad 328 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 17 30 1.8E-7 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_14800 20d86500fbc597efbfb0656593a15dad 328 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 41 61 1.8E-7 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_14800 20d86500fbc597efbfb0656593a15dad 328 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 6 17 1.8E-7 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_14800 20d86500fbc597efbfb0656593a15dad 328 Gene3D G3DSA:1.10.1660.10 7 198 1.8E-25 T 13-10-2018 RAM_14800 20d86500fbc597efbfb0656593a15dad 328 SMART SM00422 5 74 1.4E-19 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_36180 e1d87e8bc87207af90c029494c8c554a 338 SUPERFAMILY SSF53383 15 336 4.78E-60 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_36180 e1d87e8bc87207af90c029494c8c554a 338 Pfam PF00155 Aminotransferase class I and II 28 331 1.7E-30 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RAM_36180 e1d87e8bc87207af90c029494c8c554a 338 Gene3D G3DSA:3.90.1150.10 18 335 4.6E-80 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_36180 e1d87e8bc87207af90c029494c8c554a 338 Gene3D G3DSA:3.40.640.10 30 242 4.6E-80 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_36180 e1d87e8bc87207af90c029494c8c554a 338 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 194 207 - T 13-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 RAM_42115 56bdad94eba0ed4166e066817e915fd3 148 Gene3D G3DSA:3.30.720.120 6 69 7.7E-9 T 13-10-2018 RAM_42115 56bdad94eba0ed4166e066817e915fd3 148 SUPERFAMILY SSF54593 6 129 2.55E-17 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_42115 56bdad94eba0ed4166e066817e915fd3 148 Gene3D G3DSA:3.30.720.110 76 146 2.2E-23 T 13-10-2018 RAM_36775 882a9f89fed47be470c98632f4e2aad2 374 SUPERFAMILY SSF47203 220 365 2.74E-33 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_36775 882a9f89fed47be470c98632f4e2aad2 374 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 116 4.0E-16 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_36775 882a9f89fed47be470c98632f4e2aad2 374 Gene3D G3DSA:1.20.140.10 231 368 1.3E-33 T 13-10-2018 RAM_36775 882a9f89fed47be470c98632f4e2aad2 374 SUPERFAMILY SSF56645 2 217 1.7E-42 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_36775 882a9f89fed47be470c98632f4e2aad2 374 Gene3D G3DSA:1.10.540.10 1 117 2.0E-27 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_36775 882a9f89fed47be470c98632f4e2aad2 374 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 223 362 2.3E-23 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_36775 882a9f89fed47be470c98632f4e2aad2 374 Gene3D G3DSA:2.40.110.10 118 227 1.1E-16 T 13-10-2018 RAM_31455 7a413525bfe47ac3c8a356b8f7df6cee 179 Gene3D G3DSA:1.10.238.10 7 179 3.3E-37 T 13-10-2018 RAM_31455 7a413525bfe47ac3c8a356b8f7df6cee 179 ProSitePatterns PS00018 EF-hand calcium-binding domain. 22 34 - T 13-10-2018 IPR018247 EF-Hand 1, calcium-binding site RAM_31455 7a413525bfe47ac3c8a356b8f7df6cee 179 SUPERFAMILY SSF47473 6 168 7.83E-22 T 13-10-2018 IPR011992 EF-hand domain pair RAM_31455 7a413525bfe47ac3c8a356b8f7df6cee 179 Pfam PF13202 EF hand 137 157 1.7E-4 T 13-10-2018 IPR002048 EF-hand domain GO:0005509 RAM_31455 7a413525bfe47ac3c8a356b8f7df6cee 179 SMART SM00054 13 41 9.7 T 13-10-2018 IPR002048 EF-hand domain GO:0005509 RAM_31455 7a413525bfe47ac3c8a356b8f7df6cee 179 SMART SM00054 100 128 0.42 T 13-10-2018 IPR002048 EF-hand domain GO:0005509 RAM_31455 7a413525bfe47ac3c8a356b8f7df6cee 179 SMART SM00054 137 162 27.0 T 13-10-2018 IPR002048 EF-hand domain GO:0005509 RAM_31455 7a413525bfe47ac3c8a356b8f7df6cee 179 ProSitePatterns PS00018 EF-hand calcium-binding domain. 109 121 - T 13-10-2018 IPR018247 EF-Hand 1, calcium-binding site RAM_31455 7a413525bfe47ac3c8a356b8f7df6cee 179 Pfam PF13499 EF-hand domain pair 13 124 1.1E-7 T 13-10-2018 IPR002048 EF-hand domain GO:0005509 RAM_37235 83ddc4c7dfa50e7817e107e09a9785f4 291 Pfam PF06439 Domain of Unknown Function (DUF1080) 13 286 3.1E-22 T 13-10-2018 IPR010496 Domain of unknown function DUF1080 RAM_13485 53a8d47abe35935c8de7e79b66929efa 540 Pfam PF00069 Protein kinase domain 2 242 5.7E-42 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_13485 53a8d47abe35935c8de7e79b66929efa 540 Gene3D G3DSA:3.30.200.20 1 73 1.4E-18 T 13-10-2018 RAM_13485 53a8d47abe35935c8de7e79b66929efa 540 SUPERFAMILY SSF56112 1 330 1.69E-61 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_13485 53a8d47abe35935c8de7e79b66929efa 540 SMART SM00220 1 248 4.1E-43 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_13485 53a8d47abe35935c8de7e79b66929efa 540 Gene3D G3DSA:1.10.510.10 74 256 1.5E-42 T 13-10-2018 RAM_13485 53a8d47abe35935c8de7e79b66929efa 540 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 113 125 - T 13-10-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 RAM_22510 49867cf6dcfc98601b181e5bb3196fe7 885 Gene3D G3DSA:1.25.40.10 598 878 2.7E-42 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_22510 49867cf6dcfc98601b181e5bb3196fe7 885 Pfam PF13424 Tetratricopeptide repeat 707 776 3.3E-9 T 13-10-2018 RAM_22510 49867cf6dcfc98601b181e5bb3196fe7 885 SMART SM01043 95 240 7.8E-45 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_22510 49867cf6dcfc98601b181e5bb3196fe7 885 SUPERFAMILY SSF46894 2 88 3.68E-15 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_22510 49867cf6dcfc98601b181e5bb3196fe7 885 Pfam PF00486 Transcriptional regulatory protein, C terminal 23 75 1.2E-7 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_22510 49867cf6dcfc98601b181e5bb3196fe7 885 Pfam PF03704 Bacterial transcriptional activator domain 95 240 4.9E-40 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_22510 49867cf6dcfc98601b181e5bb3196fe7 885 Gene3D G3DSA:1.10.10.10 1 90 1.0E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_22510 49867cf6dcfc98601b181e5bb3196fe7 885 SMART SM00862 15 88 9.2E-12 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_22510 49867cf6dcfc98601b181e5bb3196fe7 885 SMART SM00028 664 697 270.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_22510 49867cf6dcfc98601b181e5bb3196fe7 885 SMART SM00028 784 817 1.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_22510 49867cf6dcfc98601b181e5bb3196fe7 885 SMART SM00028 824 857 14.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_22510 49867cf6dcfc98601b181e5bb3196fe7 885 SMART SM00028 704 737 240.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_22510 49867cf6dcfc98601b181e5bb3196fe7 885 SMART SM00028 744 777 1.4 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_22510 49867cf6dcfc98601b181e5bb3196fe7 885 SUPERFAMILY SSF48452 646 732 1.8E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_22510 49867cf6dcfc98601b181e5bb3196fe7 885 SMART SM00382 247 380 2.9E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_22510 49867cf6dcfc98601b181e5bb3196fe7 885 SUPERFAMILY SSF48452 722 862 4.93E-18 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_22510 49867cf6dcfc98601b181e5bb3196fe7 885 PRINTS PR00364 Disease resistance protein signature 411 425 3.6E-8 T 13-10-2018 RAM_22510 49867cf6dcfc98601b181e5bb3196fe7 885 PRINTS PR00364 Disease resistance protein signature 326 340 3.6E-8 T 13-10-2018 RAM_22510 49867cf6dcfc98601b181e5bb3196fe7 885 PRINTS PR00364 Disease resistance protein signature 250 265 3.6E-8 T 13-10-2018 RAM_22510 49867cf6dcfc98601b181e5bb3196fe7 885 SUPERFAMILY SSF52540 234 476 1.13E-27 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_22510 49867cf6dcfc98601b181e5bb3196fe7 885 Pfam PF00931 NB-ARC domain 251 430 1.3E-11 T 13-10-2018 IPR002182 NB-ARC GO:0043531 Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-6798695|Reactome: R-HSA-6803207|Reactome: R-HSA-8953750 RAM_22510 49867cf6dcfc98601b181e5bb3196fe7 885 SUPERFAMILY SSF48452 90 256 6.32E-38 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_22510 49867cf6dcfc98601b181e5bb3196fe7 885 Gene3D G3DSA:1.25.40.10 93 257 1.5E-49 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_09500 218ba926c896f566d6f4e0c3326eaf3a 284 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 181 280 5.5E-21 T 13-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal RAM_09500 218ba926c896f566d6f4e0c3326eaf3a 284 SUPERFAMILY SSF55447 177 283 2.09E-27 T 13-10-2018 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily RAM_09500 218ba926c896f566d6f4e0c3326eaf3a 284 Gene3D G3DSA:3.30.465.10 58 174 6.7E-41 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 RAM_09500 218ba926c896f566d6f4e0c3326eaf3a 284 Gene3D G3DSA:3.30.43.10 1 54 2.0E-24 T 13-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 RAM_09500 218ba926c896f566d6f4e0c3326eaf3a 284 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 5 174 1.1E-52 T 13-10-2018 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 RAM_09500 218ba926c896f566d6f4e0c3326eaf3a 284 Gene3D G3DSA:3.30.390.50 178 284 1.5E-26 T 13-10-2018 RAM_09500 218ba926c896f566d6f4e0c3326eaf3a 284 SMART SM01092 180 281 4.4E-29 T 13-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal RAM_09500 218ba926c896f566d6f4e0c3326eaf3a 284 SUPERFAMILY SSF56176 2 174 9.54E-58 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RAM_06255 6f4a0687e2673d7fb0e1193ec8c48509 694 Pfam PF13361 UvrD-like helicase C-terminal domain 287 410 1.3E-15 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 RAM_06255 6f4a0687e2673d7fb0e1193ec8c48509 694 Gene3D G3DSA:1.10.486.10 394 417 3.5E-29 T 13-10-2018 RAM_06255 6f4a0687e2673d7fb0e1193ec8c48509 694 Pfam PF00570 HRDC domain 622 688 1.4E-20 T 13-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 RAM_06255 6f4a0687e2673d7fb0e1193ec8c48509 694 Pfam PF13361 UvrD-like helicase C-terminal domain 481 550 1.4E-21 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 RAM_06255 6f4a0687e2673d7fb0e1193ec8c48509 694 Gene3D G3DSA:1.10.10.160 115 198 2.1E-73 T 13-10-2018 IPR013986 DExx box DNA helicase domain superfamily RAM_06255 6f4a0687e2673d7fb0e1193ec8c48509 694 SMART SM00341 618 694 1.1E-9 T 13-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 RAM_06255 6f4a0687e2673d7fb0e1193ec8c48509 694 SUPERFAMILY SSF47819 612 691 1.88E-21 T 13-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 RAM_06255 6f4a0687e2673d7fb0e1193ec8c48509 694 Gene3D G3DSA:3.40.50.300 17 282 2.1E-73 T 13-10-2018 RAM_06255 6f4a0687e2673d7fb0e1193ec8c48509 694 Gene3D G3DSA:3.40.50.300 289 393 3.5E-29 T 13-10-2018 RAM_06255 6f4a0687e2673d7fb0e1193ec8c48509 694 Pfam PF00580 UvrD/REP helicase N-terminal domain 17 280 3.9E-47 T 13-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 RAM_06255 6f4a0687e2673d7fb0e1193ec8c48509 694 SUPERFAMILY SSF52540 10 572 2.54E-129 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_06255 6f4a0687e2673d7fb0e1193ec8c48509 694 Gene3D G3DSA:3.40.50.300 441 574 7.3E-27 T 13-10-2018 RAM_06255 6f4a0687e2673d7fb0e1193ec8c48509 694 Gene3D G3DSA:1.10.150.80 620 692 1.7E-20 T 13-10-2018 RAM_15345 97ff432c7f7bbd1e08fa464696f94fd4 543 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 412 431 - T 13-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 RAM_15345 97ff432c7f7bbd1e08fa464696f94fd4 543 Gene3D G3DSA:3.40.50.970 5 184 3.6E-53 T 13-10-2018 RAM_15345 97ff432c7f7bbd1e08fa464696f94fd4 543 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 382 522 3.0E-37 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RAM_15345 97ff432c7f7bbd1e08fa464696f94fd4 543 SUPERFAMILY SSF52518 3 192 7.25E-46 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_15345 97ff432c7f7bbd1e08fa464696f94fd4 543 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 9 176 1.9E-48 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RAM_15345 97ff432c7f7bbd1e08fa464696f94fd4 543 SUPERFAMILY SSF52518 358 534 1.1E-51 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_15345 97ff432c7f7bbd1e08fa464696f94fd4 543 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 199 323 1.1E-21 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 RAM_15345 97ff432c7f7bbd1e08fa464696f94fd4 543 Gene3D G3DSA:3.40.50.1220 189 347 3.8E-31 T 13-10-2018 RAM_15345 97ff432c7f7bbd1e08fa464696f94fd4 543 SUPERFAMILY SSF52467 164 339 8.96E-33 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily RAM_15345 97ff432c7f7bbd1e08fa464696f94fd4 543 Gene3D G3DSA:3.40.50.970 354 529 2.5E-50 T 13-10-2018 RAM_12810 6665e214099ba5a6d34bd4c82e7c4171 554 SUPERFAMILY SSF51905 2 544 4.81E-44 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_12810 6665e214099ba5a6d34bd4c82e7c4171 554 SUPERFAMILY SSF56425 307 481 3.92E-32 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_12810 6665e214099ba5a6d34bd4c82e7c4171 554 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 283 302 8.7E-6 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAM_12810 6665e214099ba5a6d34bd4c82e7c4171 554 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 6 28 8.7E-6 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAM_12810 6665e214099ba5a6d34bd4c82e7c4171 554 Gene3D G3DSA:3.50.50.60 5 539 1.5E-158 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_12810 6665e214099ba5a6d34bd4c82e7c4171 554 Pfam PF00890 FAD binding domain 6 527 7.9E-84 T 13-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_12810 6665e214099ba5a6d34bd4c82e7c4171 554 Gene3D G3DSA:3.90.700.10 325 476 1.5E-158 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_43030 85ebc96bd119269247f1e4d3721baa0a 454 SUPERFAMILY SSF51445 170 426 5.04E-18 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_43030 85ebc96bd119269247f1e4d3721baa0a 454 SMART SM00458 29 153 1.8E-27 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_43030 85ebc96bd119269247f1e4d3721baa0a 454 Gene3D G3DSA:2.80.10.50 23 120 1.0E-32 T 13-10-2018 RAM_43030 85ebc96bd119269247f1e4d3721baa0a 454 Pfam PF00652 Ricin-type beta-trefoil lectin domain 29 150 1.4E-28 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_43030 85ebc96bd119269247f1e4d3721baa0a 454 SUPERFAMILY SSF50370 33 152 5.15E-39 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_43030 85ebc96bd119269247f1e4d3721baa0a 454 Gene3D G3DSA:2.80.10.50 121 166 2.0E-11 T 13-10-2018 RAM_43030 85ebc96bd119269247f1e4d3721baa0a 454 Gene3D G3DSA:3.20.20.80 167 454 3.4E-78 T 13-10-2018 RAM_42275 32bbbd1690e7f771febb63f707a8e568 197 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 54 1.1E-16 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_42275 32bbbd1690e7f771febb63f707a8e568 197 SUPERFAMILY SSF48498 81 187 9.93E-10 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_42275 32bbbd1690e7f771febb63f707a8e568 197 ProSitePatterns PS01081 TetR-type HTH domain signature. 22 52 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RAM_42275 32bbbd1690e7f771febb63f707a8e568 197 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 10 23 4.9E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_42275 32bbbd1690e7f771febb63f707a8e568 197 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 31 54 4.9E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_42275 32bbbd1690e7f771febb63f707a8e568 197 SUPERFAMILY SSF46689 3 76 6.8E-20 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_42275 32bbbd1690e7f771febb63f707a8e568 197 Gene3D G3DSA:1.10.357.10 1 191 3.5E-49 T 13-10-2018 RAM_39850 ddab74b5b5c1157fd136b36fbb23b871 168 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 48 4.2E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_39850 ddab74b5b5c1157fd136b36fbb23b871 168 SUPERFAMILY SSF46689 6 68 4.99E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_39850 ddab74b5b5c1157fd136b36fbb23b871 168 Gene3D G3DSA:1.10.357.10 5 152 5.2E-14 T 13-10-2018 RAM_06540 cffae53064d86c46d0f448b0f6d9975b 372 SUPERFAMILY SSF54001 253 370 2.29E-32 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily RAM_06540 cffae53064d86c46d0f448b0f6d9975b 372 Gene3D G3DSA:3.90.1720.10 237 364 2.2E-36 T 13-10-2018 RAM_06540 cffae53064d86c46d0f448b0f6d9975b 372 Pfam PF00877 NlpC/P60 family 272 365 1.4E-19 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain RAM_13750 041c3e77bbeee6f8f31b06625ef9fce8 305 SUPERFAMILY SSF52266 56 245 9.62E-28 T 13-10-2018 RAM_13750 041c3e77bbeee6f8f31b06625ef9fce8 305 Gene3D G3DSA:3.40.50.1110 47 245 3.2E-23 T 13-10-2018 IPR036514 SGNH hydrolase superfamily RAM_13750 041c3e77bbeee6f8f31b06625ef9fce8 305 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 60 235 5.6E-20 T 13-10-2018 IPR013830 SGNH hydrolase-type esterase domain RAM_32730 53dfa73d897c06707210d47b6622ece6 295 SUPERFAMILY SSF51735 2 228 6.55E-48 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_32730 53dfa73d897c06707210d47b6622ece6 295 Pfam PF13460 NAD(P)H-binding 7 172 8.8E-25 T 13-10-2018 IPR016040 NAD(P)-binding domain RAM_32730 53dfa73d897c06707210d47b6622ece6 295 Gene3D G3DSA:3.40.50.720 3 295 2.5E-69 T 13-10-2018 RAM_07975 5dafb3181331ff8118aa8d1da58f47e5 389 Gene3D G3DSA:1.10.260.40 2 64 1.4E-9 T 13-10-2018 RAM_07975 5dafb3181331ff8118aa8d1da58f47e5 389 SUPERFAMILY SSF47413 3 62 5.33E-9 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_07975 5dafb3181331ff8118aa8d1da58f47e5 389 SMART SM00530 7 62 2.5E-8 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_07975 5dafb3181331ff8118aa8d1da58f47e5 389 Pfam PF13560 Helix-turn-helix domain 3 63 3.8E-11 T 13-10-2018 RAM_02205 afdc1378f787bd37d86235bc4f7f7ae9 180 Pfam PF04073 Aminoacyl-tRNA editing domain 45 167 9.3E-19 T 13-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 RAM_02205 afdc1378f787bd37d86235bc4f7f7ae9 180 SUPERFAMILY SSF55826 43 174 1.44E-23 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 RAM_02205 afdc1378f787bd37d86235bc4f7f7ae9 180 Gene3D G3DSA:3.90.960.10 23 176 1.2E-24 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 RAM_40390 56f3fa6cb4d4688b62478a0eb970586a 566 Pfam PF02538 Hydantoinase B/oxoprolinase 4 506 5.2E-139 T 13-10-2018 IPR003692 Hydantoinase B/oxoprolinase GO:0003824 Reactome: R-HSA-174403|Reactome: R-HSA-5578998 RAM_13555 bad0a8c1b9564b72f98f5b61553c8a6a 145 Gene3D G3DSA:3.10.180.10 1 145 1.7E-58 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_13555 bad0a8c1b9564b72f98f5b61553c8a6a 145 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 8 120 2.6E-13 T 13-10-2018 RAM_13555 bad0a8c1b9564b72f98f5b61553c8a6a 145 SUPERFAMILY SSF54593 3 143 1.51E-35 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_09605 4f538876465fec1871d0e4f44f455b4a 553 Pfam PF03814 Potassium-transporting ATPase A subunit 13 552 2.9E-215 T 13-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 RAM_09605 4f538876465fec1871d0e4f44f455b4a 553 Hamap MF_00275 Potassium-transporting ATPase potassium-binding subunit [kdpA]. 4 553 31.578 T 13-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 RAM_09605 4f538876465fec1871d0e4f44f455b4a 553 PIRSF PIRSF001294 3 553 3.5E-206 T 13-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 RAM_09605 4f538876465fec1871d0e4f44f455b4a 553 TIGRFAM TIGR00680 kdpA: K+-transporting ATPase, A subunit 5 552 2.1E-194 T 13-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 RAM_06415 58621b3308e7911952a1f9df6128ead2 260 Gene3D G3DSA:3.30.450.40 82 259 3.4E-39 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_06415 58621b3308e7911952a1f9df6128ead2 260 Pfam PF01614 Bacterial transcriptional regulator 127 251 2.9E-16 T 13-10-2018 IPR014757 Transcription regulator IclR, C-terminal RAM_06415 58621b3308e7911952a1f9df6128ead2 260 Pfam PF09339 IclR helix-turn-helix domain 9 57 2.7E-14 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RAM_06415 58621b3308e7911952a1f9df6128ead2 260 Gene3D G3DSA:1.10.10.10 5 81 1.8E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_06415 58621b3308e7911952a1f9df6128ead2 260 SUPERFAMILY SSF46785 7 80 2.14E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_06415 58621b3308e7911952a1f9df6128ead2 260 SMART SM00346 7 97 6.1E-22 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RAM_06415 58621b3308e7911952a1f9df6128ead2 260 SUPERFAMILY SSF55781 72 258 1.83E-38 T 13-10-2018 RAM_42975 ae1848e7ea17d321c1f39a42c7b40ba1 467 PRINTS PR00131 Glycosyl hydrolase family 1 signature 369 377 4.5E-21 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RAM_42975 ae1848e7ea17d321c1f39a42c7b40ba1 467 PRINTS PR00131 Glycosyl hydrolase family 1 signature 435 447 4.5E-21 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RAM_42975 ae1848e7ea17d321c1f39a42c7b40ba1 467 PRINTS PR00131 Glycosyl hydrolase family 1 signature 411 428 4.5E-21 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RAM_42975 ae1848e7ea17d321c1f39a42c7b40ba1 467 PRINTS PR00131 Glycosyl hydrolase family 1 signature 390 401 4.5E-21 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RAM_42975 ae1848e7ea17d321c1f39a42c7b40ba1 467 PRINTS PR00131 Glycosyl hydrolase family 1 signature 300 314 4.5E-21 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RAM_42975 ae1848e7ea17d321c1f39a42c7b40ba1 467 SUPERFAMILY SSF51445 13 461 1.22E-154 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_42975 ae1848e7ea17d321c1f39a42c7b40ba1 467 Pfam PF00232 Glycosyl hydrolase family 1 16 462 1.6E-154 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RAM_42975 ae1848e7ea17d321c1f39a42c7b40ba1 467 TIGRFAM TIGR03356 BGL: beta-galactosidase 19 457 2.7E-179 T 13-10-2018 IPR017736 Glycoside hydrolase, family 1, beta-glucosidase GO:0008422|GO:0030245 KEGG: 00460+3.2.1.21|KEGG: 00500+3.2.1.21|KEGG: 00940+3.2.1.21|MetaCyc: PWY-3121|MetaCyc: PWY-5176|MetaCyc: PWY-6002|MetaCyc: PWY-6788|MetaCyc: PWY-7091|MetaCyc: PWY-7092|MetaCyc: PWY-7913 RAM_42975 ae1848e7ea17d321c1f39a42c7b40ba1 467 Gene3D G3DSA:3.20.20.80 11 466 1.3E-166 T 13-10-2018 RAM_42975 ae1848e7ea17d321c1f39a42c7b40ba1 467 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 22 36 - T 13-10-2018 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site RAM_44755 da896c3978a5d9f2911054d9adf71dab 470 SUPERFAMILY SSF63737 34 227 3.14E-29 T 13-10-2018 RAM_44755 da896c3978a5d9f2911054d9adf71dab 470 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 331 343 1.5E-5 T 13-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RAM_44755 da896c3978a5d9f2911054d9adf71dab 470 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 165 180 1.5E-5 T 13-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RAM_44755 da896c3978a5d9f2911054d9adf71dab 470 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 312 327 1.5E-5 T 13-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RAM_44755 da896c3978a5d9f2911054d9adf71dab 470 Pfam PF01433 Peptidase family M1 domain 312 449 2.5E-17 T 13-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RAM_44755 da896c3978a5d9f2911054d9adf71dab 470 Gene3D G3DSA:2.60.40.1730 46 229 5.3E-24 T 13-10-2018 RAM_44755 da896c3978a5d9f2911054d9adf71dab 470 SUPERFAMILY SSF55486 238 456 6.23E-37 T 13-10-2018 RAM_44755 da896c3978a5d9f2911054d9adf71dab 470 Gene3D G3DSA:1.10.390.60 233 454 3.0E-27 T 13-10-2018 RAM_24730 2ab9910673a7ed66064b1a0629896b3d 571 SUPERFAMILY SSF51445 32 305 1.74E-19 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_24730 2ab9910673a7ed66064b1a0629896b3d 571 SUPERFAMILY SSF49785 447 570 2.89E-12 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_24730 2ab9910673a7ed66064b1a0629896b3d 571 Gene3D G3DSA:3.20.20.80 23 347 8.2E-90 T 13-10-2018 RAM_24730 2ab9910673a7ed66064b1a0629896b3d 571 Pfam PF02018 Carbohydrate binding domain 449 556 4.2E-9 T 13-10-2018 IPR003305 Carbohydrate-binding, CenC-like GO:0016798 RAM_24730 2ab9910673a7ed66064b1a0629896b3d 571 Gene3D G3DSA:2.60.120.260 445 571 2.6E-22 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_24730 2ab9910673a7ed66064b1a0629896b3d 571 Pfam PF00704 Glycosyl hydrolases family 18 34 238 1.5E-13 T 13-10-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 RAM_33150 e3e2c03a93d9c645a6d7970904018ba9 865 Gene3D G3DSA:3.90.1170.50 326 401 2.9E-8 T 13-10-2018 RAM_33150 e3e2c03a93d9c645a6d7970904018ba9 865 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 4 61 2.1E-4 T 13-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RAM_33150 e3e2c03a93d9c645a6d7970904018ba9 865 Gene3D G3DSA:3.30.365.10 457 692 1.8E-57 T 13-10-2018 RAM_33150 e3e2c03a93d9c645a6d7970904018ba9 865 SUPERFAMILY SSF56003 453 858 1.44E-104 T 13-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 RAM_33150 e3e2c03a93d9c645a6d7970904018ba9 865 SUPERFAMILY SSF56003 176 383 4.19E-34 T 13-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 RAM_33150 e3e2c03a93d9c645a6d7970904018ba9 865 SUPERFAMILY SSF47741 72 151 8.24E-23 T 13-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily RAM_33150 e3e2c03a93d9c645a6d7970904018ba9 865 Gene3D G3DSA:3.30.365.10 481 577 1.8E-57 T 13-10-2018 RAM_33150 e3e2c03a93d9c645a6d7970904018ba9 865 Pfam PF01799 [2Fe-2S] binding domain 72 143 3.5E-19 T 13-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RAM_33150 e3e2c03a93d9c645a6d7970904018ba9 865 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 451 694 8.1E-39 T 13-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RAM_33150 e3e2c03a93d9c645a6d7970904018ba9 865 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 181 320 4.4E-16 T 13-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RAM_33150 e3e2c03a93d9c645a6d7970904018ba9 865 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 730 813 4.0E-14 T 13-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RAM_33150 e3e2c03a93d9c645a6d7970904018ba9 865 SUPERFAMILY SSF54292 2 77 1.22E-19 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RAM_33150 e3e2c03a93d9c645a6d7970904018ba9 865 Gene3D G3DSA:1.10.150.120 76 154 1.0E-18 T 13-10-2018 RAM_33150 e3e2c03a93d9c645a6d7970904018ba9 865 SMART SM01008 349 427 3.2E-19 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RAM_33150 e3e2c03a93d9c645a6d7970904018ba9 865 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 38 46 - T 13-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RAM_33150 e3e2c03a93d9c645a6d7970904018ba9 865 Gene3D G3DSA:3.10.20.30 1 75 6.7E-23 T 13-10-2018 IPR012675 Beta-grasp domain superfamily RAM_33150 e3e2c03a93d9c645a6d7970904018ba9 865 Gene3D G3DSA:3.30.365.10 720 862 5.8E-34 T 13-10-2018 RAM_33150 e3e2c03a93d9c645a6d7970904018ba9 865 Gene3D G3DSA:3.30.365.10 172 320 3.9E-22 T 13-10-2018 RAM_41020 32320aef2231a76a3ad470ff72f72413 468 Pfam PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain 5 270 1.8E-73 T 13-10-2018 IPR004255 O-acyltransferase, WSD1, N-terminal GO:0004144|GO:0045017 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20 RAM_41020 32320aef2231a76a3ad470ff72f72413 468 Pfam PF06974 Protein of unknown function (DUF1298) 318 464 2.1E-23 T 13-10-2018 IPR009721 O-acyltransferase WSD1, C-terminal GO:0004144 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20 RAM_41020 32320aef2231a76a3ad470ff72f72413 468 SUPERFAMILY SSF52777 243 446 6.56E-5 T 13-10-2018 RAM_41020 32320aef2231a76a3ad470ff72f72413 468 TIGRFAM TIGR02946 acyl_WS_DGAT: acyltransferase, WS/DGAT/MGAT 5 466 3.4E-135 T 13-10-2018 IPR014292 Acyltransferase, WS/DGAT/MGAT GO:0016746|GO:0045017 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20 RAM_41020 32320aef2231a76a3ad470ff72f72413 468 SUPERFAMILY SSF52777 28 147 7.34E-6 T 13-10-2018 RAM_30715 3eb9603ee8d938c9e7278cb5a8e801ca 291 SUPERFAMILY SSF46689 188 239 2.43E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_30715 3eb9603ee8d938c9e7278cb5a8e801ca 291 Gene3D G3DSA:1.10.10.60 189 291 5.0E-29 T 13-10-2018 RAM_30715 3eb9603ee8d938c9e7278cb5a8e801ca 291 Pfam PF12833 Helix-turn-helix domain 211 289 2.8E-22 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_30715 3eb9603ee8d938c9e7278cb5a8e801ca 291 SMART SM00342 205 288 5.1E-27 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_30715 3eb9603ee8d938c9e7278cb5a8e801ca 291 SUPERFAMILY SSF46689 241 290 1.75E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_28435 92f244edf33941efcc26121ea0709164 165 Gene3D G3DSA:3.40.630.30 10 159 2.2E-19 T 13-10-2018 RAM_28435 92f244edf33941efcc26121ea0709164 165 SUPERFAMILY SSF55729 19 151 6.89E-8 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_43695 f76de5885569a48cdf91c952f3cf0da4 268 Gene3D G3DSA:3.40.190.10 126 228 1.9E-55 T 13-10-2018 RAM_43695 f76de5885569a48cdf91c952f3cf0da4 268 PIRSF PIRSF004846 1 268 5.5E-60 T 13-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 RAM_43695 f76de5885569a48cdf91c952f3cf0da4 268 Pfam PF13531 Bacterial extracellular solute-binding protein 48 264 1.4E-38 T 13-10-2018 RAM_43695 f76de5885569a48cdf91c952f3cf0da4 268 SUPERFAMILY SSF53850 47 266 1.43E-49 T 13-10-2018 RAM_43695 f76de5885569a48cdf91c952f3cf0da4 268 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 53 261 1.4E-36 T 13-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 RAM_43695 f76de5885569a48cdf91c952f3cf0da4 268 Gene3D G3DSA:3.40.190.10 50 264 1.9E-55 T 13-10-2018 RAM_06550 e7bcdf4e2109066d5ed053a30ceb9a28 164 Gene3D G3DSA:3.30.1310.10 4 108 1.4E-6 T 13-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily RAM_06550 e7bcdf4e2109066d5ed053a30ceb9a28 164 SUPERFAMILY SSF82607 10 103 6.93E-7 T 13-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily RAM_06550 e7bcdf4e2109066d5ed053a30ceb9a28 164 Pfam PF02575 YbaB/EbfC DNA-binding family 9 92 9.4E-10 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family RAM_11295 2f788600ea9dcb7655b45699c63e8688 358 TIGRFAM TIGR00433 bioB: biotin synthase 55 349 5.0E-106 T 13-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 RAM_11295 2f788600ea9dcb7655b45699c63e8688 358 SUPERFAMILY SSF102114 46 334 1.83E-64 T 13-10-2018 RAM_11295 2f788600ea9dcb7655b45699c63e8688 358 Hamap MF_01694 Biotin synthase [bioB]. 31 352 37.643 T 13-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 RAM_11295 2f788600ea9dcb7655b45699c63e8688 358 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 259 347 8.5E-12 T 13-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 RAM_11295 2f788600ea9dcb7655b45699c63e8688 358 SMART SM00876 259 351 8.2E-28 T 13-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 RAM_11295 2f788600ea9dcb7655b45699c63e8688 358 SMART SM00729 83 288 3.9E-34 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 RAM_11295 2f788600ea9dcb7655b45699c63e8688 358 Gene3D G3DSA:3.20.20.70 47 352 1.8E-98 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_11295 2f788600ea9dcb7655b45699c63e8688 358 PIRSF PIRSF001619 28 357 2.0E-104 T 13-10-2018 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 RAM_11295 2f788600ea9dcb7655b45699c63e8688 358 Pfam PF04055 Radical SAM superfamily 90 246 6.8E-15 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RAM_27855 63606c734fea142b85e42d3e17b79a91 328 SUPERFAMILY SSF55469 7 87 1.11E-10 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RAM_27855 63606c734fea142b85e42d3e17b79a91 328 Gene3D G3DSA:3.40.109.10 2 101 1.7E-32 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RAM_27855 63606c734fea142b85e42d3e17b79a91 328 Gene3D G3DSA:3.40.109.10 104 322 4.7E-50 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RAM_27855 63606c734fea142b85e42d3e17b79a91 328 SUPERFAMILY SSF55469 235 318 5.0E-7 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RAM_16140 69517fec5752afc5b65ef42032baf90a 171 Pfam PF04542 Sigma-70 region 2 28 87 1.2E-13 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_16140 69517fec5752afc5b65ef42032baf90a 171 Pfam PF08281 Sigma-70, region 4 112 163 3.1E-12 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_16140 69517fec5752afc5b65ef42032baf90a 171 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 24 167 2.0E-18 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_16140 69517fec5752afc5b65ef42032baf90a 171 Gene3D G3DSA:1.10.10.10 90 170 2.1E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_16140 69517fec5752afc5b65ef42032baf90a 171 SUPERFAMILY SSF88659 103 168 3.92E-12 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_16140 69517fec5752afc5b65ef42032baf90a 171 Gene3D G3DSA:1.10.1740.10 4 88 7.8E-18 T 13-10-2018 RAM_16140 69517fec5752afc5b65ef42032baf90a 171 SUPERFAMILY SSF88946 6 89 2.24E-20 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_43550 8e0ede9805adc9b7259a037aed746b37 935 SUPERFAMILY SSF55874 50 180 5.02E-9 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_05350 b860af57e61a51e9681ac34b4555431a 503 Gene3D G3DSA:3.40.50.300 283 501 2.9E-63 T 13-10-2018 RAM_05350 b860af57e61a51e9681ac34b4555431a 503 Pfam PF00664 ABC transporter transmembrane region 59 241 9.5E-11 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 RAM_05350 b860af57e61a51e9681ac34b4555431a 503 TIGRFAM TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit 6 492 1.1E-150 T 13-10-2018 IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD GO:0005524|GO:0016020|GO:0042883 RAM_05350 b860af57e61a51e9681ac34b4555431a 503 ProSitePatterns PS00211 ABC transporters family signature. 421 435 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_05350 b860af57e61a51e9681ac34b4555431a 503 SUPERFAMILY SSF90123 23 267 1.15E-28 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RAM_05350 b860af57e61a51e9681ac34b4555431a 503 Gene3D G3DSA:1.20.1560.10 1 271 5.8E-24 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RAM_05350 b860af57e61a51e9681ac34b4555431a 503 SUPERFAMILY SSF52540 289 498 3.2E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_05350 b860af57e61a51e9681ac34b4555431a 503 Pfam PF00005 ABC transporter 306 450 3.9E-24 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_05350 b860af57e61a51e9681ac34b4555431a 503 SMART SM00382 315 496 1.5E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_15615 8833a270be3402e746f11ef91bfc8623 337 Gene3D G3DSA:3.40.50.2300 80 311 9.6E-46 T 13-10-2018 RAM_15615 8833a270be3402e746f11ef91bfc8623 337 Gene3D G3DSA:1.10.260.40 1 58 1.4E-20 T 13-10-2018 RAM_15615 8833a270be3402e746f11ef91bfc8623 337 SUPERFAMILY SSF47413 2 58 2.12E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_15615 8833a270be3402e746f11ef91bfc8623 337 Pfam PF13377 Periplasmic binding protein-like domain 168 331 1.0E-22 T 13-10-2018 RAM_15615 8833a270be3402e746f11ef91bfc8623 337 SUPERFAMILY SSF53822 57 317 1.97E-37 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_15615 8833a270be3402e746f11ef91bfc8623 337 SMART SM00354 1 70 4.2E-24 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_15615 8833a270be3402e746f11ef91bfc8623 337 Gene3D G3DSA:3.40.50.2300 160 291 9.6E-46 T 13-10-2018 RAM_15615 8833a270be3402e746f11ef91bfc8623 337 ProSitePatterns PS00356 LacI-type HTH domain signature. 3 21 - T 13-10-2018 RAM_15615 8833a270be3402e746f11ef91bfc8623 337 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 47 5.6E-16 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_16715 a8541962ed7097dec9eda3496f93318c 443 Pfam PF04616 Glycosyl hydrolases family 43 18 298 8.0E-53 T 13-10-2018 IPR006710 Glycoside hydrolase, family 43 GO:0004553|GO:0005975 RAM_16715 a8541962ed7097dec9eda3496f93318c 443 Pfam PF03422 Carbohydrate binding module (family 6) 322 442 3.3E-41 T 13-10-2018 IPR005084 Carbohydrate binding module family 6 GO:0030246 RAM_16715 a8541962ed7097dec9eda3496f93318c 443 SMART SM00606 314 443 3.9E-47 T 13-10-2018 IPR006584 Cellulose binding, type IV GO:0030246 RAM_16715 a8541962ed7097dec9eda3496f93318c 443 SUPERFAMILY SSF75005 6 299 1.57E-67 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily RAM_16715 a8541962ed7097dec9eda3496f93318c 443 SUPERFAMILY SSF49785 314 441 1.29E-36 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_16715 a8541962ed7097dec9eda3496f93318c 443 Gene3D G3DSA:2.60.120.260 315 442 2.6E-47 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_16715 a8541962ed7097dec9eda3496f93318c 443 Gene3D G3DSA:2.115.10.20 9 306 3.0E-89 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily RAM_03445 159c27043ec76da2a57b29299dc5e1d1 699 Pfam PF00679 Elongation factor G C-terminus 605 691 1.7E-30 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like RAM_03445 159c27043ec76da2a57b29299dc5e1d1 699 SMART SM00889 482 603 3.6E-72 T 13-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 RAM_03445 159c27043ec76da2a57b29299dc5e1d1 699 Gene3D G3DSA:3.40.50.300 5 297 1.9E-114 T 13-10-2018 RAM_03445 159c27043ec76da2a57b29299dc5e1d1 699 SUPERFAMILY SSF54211 481 604 1.95E-40 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RAM_03445 159c27043ec76da2a57b29299dc5e1d1 699 SUPERFAMILY SSF54980 608 694 1.06E-30 T 13-10-2018 IPR035647 EF-G domain III/V-like RAM_03445 159c27043ec76da2a57b29299dc5e1d1 699 SUPERFAMILY SSF54980 406 483 1.01E-24 T 13-10-2018 IPR035647 EF-G domain III/V-like RAM_03445 159c27043ec76da2a57b29299dc5e1d1 699 Pfam PF00009 Elongation factor Tu GTP binding domain 11 283 1.1E-66 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_03445 159c27043ec76da2a57b29299dc5e1d1 699 SUPERFAMILY SSF50447 267 406 2.52E-32 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RAM_03445 159c27043ec76da2a57b29299dc5e1d1 699 SUPERFAMILY SSF52540 8 283 6.44E-108 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_03445 159c27043ec76da2a57b29299dc5e1d1 699 SMART SM00838 605 692 5.3E-58 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like RAM_03445 159c27043ec76da2a57b29299dc5e1d1 699 Gene3D G3DSA:3.30.70.870 408 485 5.2E-31 T 13-10-2018 RAM_03445 159c27043ec76da2a57b29299dc5e1d1 699 Gene3D G3DSA:2.40.30.10 298 407 1.3E-39 T 13-10-2018 RAM_03445 159c27043ec76da2a57b29299dc5e1d1 699 Pfam PF03764 Elongation factor G, domain IV 481 602 1.2E-46 T 13-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 RAM_03445 159c27043ec76da2a57b29299dc5e1d1 699 Pfam PF14492 Elongation Factor G, domain II 406 480 1.1E-33 T 13-10-2018 RAM_03445 159c27043ec76da2a57b29299dc5e1d1 699 Gene3D G3DSA:3.30.70.240 609 679 8.0E-89 T 13-10-2018 RAM_03445 159c27043ec76da2a57b29299dc5e1d1 699 PRINTS PR00315 GTP-binding elongation factor signature 80 90 9.0E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_03445 159c27043ec76da2a57b29299dc5e1d1 699 PRINTS PR00315 GTP-binding elongation factor signature 96 107 9.0E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_03445 159c27043ec76da2a57b29299dc5e1d1 699 PRINTS PR00315 GTP-binding elongation factor signature 14 27 9.0E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_03445 159c27043ec76da2a57b29299dc5e1d1 699 PRINTS PR00315 GTP-binding elongation factor signature 60 68 9.0E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_03445 159c27043ec76da2a57b29299dc5e1d1 699 PRINTS PR00315 GTP-binding elongation factor signature 132 141 9.0E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_03445 159c27043ec76da2a57b29299dc5e1d1 699 Gene3D G3DSA:3.30.230.10 486 692 8.0E-89 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RAM_03445 159c27043ec76da2a57b29299dc5e1d1 699 TIGRFAM TIGR00484 EF-G: translation elongation factor G 7 696 0.0 T 13-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 RAM_03445 159c27043ec76da2a57b29299dc5e1d1 699 Pfam PF03144 Elongation factor Tu domain 2 326 393 7.0E-14 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 RAM_03445 159c27043ec76da2a57b29299dc5e1d1 699 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 12 182 5.3E-36 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 RAM_03445 159c27043ec76da2a57b29299dc5e1d1 699 Hamap MF_00054_B Elongation factor G [fusA]. 8 696 109.175 T 13-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 RAM_03445 159c27043ec76da2a57b29299dc5e1d1 699 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 53 68 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site RAM_29200 e213ee33646df7b264daee5fbcfe7a9b 568 TIGRFAM TIGR02891 CtaD_CoxA: cytochrome c oxidase, subunit I 31 534 1.1E-214 T 13-10-2018 IPR014241 Cytochrome c oxidase, subunit I bacterial type GO:0004129|GO:0005886|GO:0015990|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 RAM_29200 e213ee33646df7b264daee5fbcfe7a9b 568 SUPERFAMILY SSF81442 28 537 6.28E-177 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_29200 e213ee33646df7b264daee5fbcfe7a9b 568 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 259 313 - T 13-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_29200 e213ee33646df7b264daee5fbcfe7a9b 568 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 38 481 4.9E-149 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_29200 e213ee33646df7b264daee5fbcfe7a9b 568 PRINTS PR01165 Cytochrome c oxidase subunit I signature 103 127 5.7E-101 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_29200 e213ee33646df7b264daee5fbcfe7a9b 568 PRINTS PR01165 Cytochrome c oxidase subunit I signature 388 407 5.7E-101 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_29200 e213ee33646df7b264daee5fbcfe7a9b 568 PRINTS PR01165 Cytochrome c oxidase subunit I signature 236 257 5.7E-101 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_29200 e213ee33646df7b264daee5fbcfe7a9b 568 PRINTS PR01165 Cytochrome c oxidase subunit I signature 29 54 5.7E-101 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_29200 e213ee33646df7b264daee5fbcfe7a9b 568 PRINTS PR01165 Cytochrome c oxidase subunit I signature 178 196 5.7E-101 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_29200 e213ee33646df7b264daee5fbcfe7a9b 568 PRINTS PR01165 Cytochrome c oxidase subunit I signature 146 158 5.7E-101 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_29200 e213ee33646df7b264daee5fbcfe7a9b 568 PRINTS PR01165 Cytochrome c oxidase subunit I signature 438 459 5.7E-101 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_29200 e213ee33646df7b264daee5fbcfe7a9b 568 PRINTS PR01165 Cytochrome c oxidase subunit I signature 257 278 5.7E-101 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_29200 e213ee33646df7b264daee5fbcfe7a9b 568 PRINTS PR01165 Cytochrome c oxidase subunit I signature 360 378 5.7E-101 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_29200 e213ee33646df7b264daee5fbcfe7a9b 568 PRINTS PR01165 Cytochrome c oxidase subunit I signature 207 226 5.7E-101 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_29200 e213ee33646df7b264daee5fbcfe7a9b 568 PRINTS PR01165 Cytochrome c oxidase subunit I signature 325 346 5.7E-101 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_29200 e213ee33646df7b264daee5fbcfe7a9b 568 PRINTS PR01165 Cytochrome c oxidase subunit I signature 76 99 5.7E-101 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_29200 e213ee33646df7b264daee5fbcfe7a9b 568 PRINTS PR01165 Cytochrome c oxidase subunit I signature 303 318 5.7E-101 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_29200 e213ee33646df7b264daee5fbcfe7a9b 568 Gene3D G3DSA:1.20.210.10 18 543 8.3E-205 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 814 828 - T 13-10-2018 IPR019775 WD40 repeat, conserved site RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1077 1091 - T 13-10-2018 IPR019775 WD40 repeat, conserved site RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 SUPERFAMILY SSF50978 613 742 2.11E-32 T 13-10-2018 IPR036322 WD40-repeat-containing domain superfamily GO:0005515 RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1167 1181 - T 13-10-2018 IPR019775 WD40 repeat, conserved site RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 904 918 - T 13-10-2018 IPR019775 WD40 repeat, conserved site RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 Gene3D G3DSA:2.130.10.10 1009 1141 3.1E-44 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 Gene3D G3DSA:2.130.10.10 608 696 2.4E-25 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 SMART SM00320 656 695 2.3E-10 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 SMART SM00320 701 740 7.5E-5 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 SMART SM00320 611 650 2.4E-8 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 SMART SM00320 1183 1222 7.3E-6 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 SMART SM00320 1096 1135 7.6E-12 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 SMART SM00320 1007 1045 5.9E-4 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 SMART SM00320 833 872 1.2E-7 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 SMART SM00320 788 827 3.1E-8 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 SMART SM00320 878 917 1.7E-9 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 SMART SM00320 961 1000 1.8E-4 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 SMART SM00320 1051 1090 1.7E-11 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 SMART SM00320 746 785 8.7E-11 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 SMART SM00320 919 955 1.2 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 SMART SM00320 1141 1180 2.8E-9 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 SUPERFAMILY SSF52540 112 340 2.84E-13 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 859 873 - T 13-10-2018 IPR019775 WD40 repeat, conserved site RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1122 1136 - T 13-10-2018 IPR019775 WD40 repeat, conserved site RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 Gene3D G3DSA:2.130.10.10 829 1007 2.7E-48 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 Gene3D G3DSA:2.130.10.10 697 828 4.7E-41 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 PRINTS PR00320 G protein beta WD-40 repeat signature 1167 1181 3.4E-8 T 13-10-2018 IPR020472 G-protein beta WD-40 repeat RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 PRINTS PR00320 G protein beta WD-40 repeat signature 904 918 3.4E-8 T 13-10-2018 IPR020472 G-protein beta WD-40 repeat RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 PRINTS PR00320 G protein beta WD-40 repeat signature 1122 1136 3.4E-8 T 13-10-2018 IPR020472 G-protein beta WD-40 repeat RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 772 786 - T 13-10-2018 IPR019775 WD40 repeat, conserved site RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 682 696 - T 13-10-2018 IPR019775 WD40 repeat, conserved site RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1209 1223 - T 13-10-2018 IPR019775 WD40 repeat, conserved site RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 Pfam PF00400 WD domain, G-beta repeat 926 955 0.063 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 Pfam PF00400 WD domain, G-beta repeat 1017 1045 0.0019 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 Pfam PF00400 WD domain, G-beta repeat 1197 1221 0.069 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 Pfam PF00400 WD domain, G-beta repeat 1056 1090 1.4E-8 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 Pfam PF00400 WD domain, G-beta repeat 659 695 4.9E-7 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 Pfam PF00400 WD domain, G-beta repeat 715 740 0.13 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 Pfam PF00400 WD domain, G-beta repeat 836 872 2.8E-5 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 Pfam PF00400 WD domain, G-beta repeat 969 995 0.005 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 Pfam PF00400 WD domain, G-beta repeat 881 917 1.2E-6 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 Pfam PF00400 WD domain, G-beta repeat 618 650 1.5E-5 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 Pfam PF00400 WD domain, G-beta repeat 796 827 2.8E-5 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 Pfam PF00400 WD domain, G-beta repeat 1147 1180 8.2E-8 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 Pfam PF00400 WD domain, G-beta repeat 1099 1135 1.2E-8 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 Pfam PF00400 WD domain, G-beta repeat 751 785 1.3E-7 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 Gene3D G3DSA:2.130.10.10 1142 1251 6.0E-27 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 SUPERFAMILY SSF50978 925 1222 5.7E-73 T 13-10-2018 IPR036322 WD40-repeat-containing domain superfamily GO:0005515 RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 SUPERFAMILY SSF50978 706 997 2.93E-77 T 13-10-2018 IPR036322 WD40-repeat-containing domain superfamily GO:0005515 RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 637 651 - T 13-10-2018 IPR019775 WD40 repeat, conserved site RAM_09065 d848abef5f9e53a39f5ceba5c0d96a9a 1259 Gene3D G3DSA:3.40.50.300 107 163 6.8E-5 T 13-10-2018 RAM_09125 02b763e9ad7ac42f2e8dd0f3d9ed3303 289 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 141 228 1.2E-21 T 13-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 RAM_09125 02b763e9ad7ac42f2e8dd0f3d9ed3303 289 SUPERFAMILY SSF46946 141 230 3.39E-25 T 13-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 RAM_09125 02b763e9ad7ac42f2e8dd0f3d9ed3303 289 Gene3D G3DSA:1.10.8.50 143 283 1.9E-42 T 13-10-2018 RAM_09125 02b763e9ad7ac42f2e8dd0f3d9ed3303 289 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 119 2.2E-36 T 13-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 RAM_09125 02b763e9ad7ac42f2e8dd0f3d9ed3303 289 Pfam PF06827 Zinc finger found in FPG and IleRS 256 283 8.6E-8 T 13-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 RAM_09125 02b763e9ad7ac42f2e8dd0f3d9ed3303 289 SMART SM01232 141 233 9.0E-38 T 13-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 RAM_09125 02b763e9ad7ac42f2e8dd0f3d9ed3303 289 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 281 8.8E-87 T 13-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 RAM_09125 02b763e9ad7ac42f2e8dd0f3d9ed3303 289 SMART SM00898 2 121 5.0E-48 T 13-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 RAM_09125 02b763e9ad7ac42f2e8dd0f3d9ed3303 289 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 282 40.584 T 13-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 RAM_09125 02b763e9ad7ac42f2e8dd0f3d9ed3303 289 Gene3D G3DSA:3.20.190.10 2 131 1.7E-38 T 13-10-2018 IPR035937 MutM-like, N-terminal RAM_09125 02b763e9ad7ac42f2e8dd0f3d9ed3303 289 SUPERFAMILY SSF81624 2 150 8.5E-37 T 13-10-2018 IPR035937 MutM-like, N-terminal RAM_09125 02b763e9ad7ac42f2e8dd0f3d9ed3303 289 SUPERFAMILY SSF57716 233 282 7.7E-15 T 13-10-2018 RAM_47265 22a4dda9eedea8f470162436c06d7491 401 Pfam PF00676 Dehydrogenase E1 component 74 349 1.3E-72 T 13-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 RAM_47265 22a4dda9eedea8f470162436c06d7491 401 SUPERFAMILY SSF52518 38 390 3.04E-95 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_47265 22a4dda9eedea8f470162436c06d7491 401 Gene3D G3DSA:3.40.50.970 16 388 4.5E-114 T 13-10-2018 RAM_47265 22a4dda9eedea8f470162436c06d7491 401 TIGRFAM TIGR03181 PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 41 387 8.6E-128 T 13-10-2018 IPR017596 Pyruvate dehydrogenase E1 component subunit alpha/BCKADH E1-alpha KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 RAM_27200 6ee334e17e693c03b038017b7cc9f443 247 SUPERFAMILY SSF51735 6 242 1.33E-76 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_27200 6ee334e17e693c03b038017b7cc9f443 247 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 137 165 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_27200 6ee334e17e693c03b038017b7cc9f443 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 1.1E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_27200 6ee334e17e693c03b038017b7cc9f443 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 1.1E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_27200 6ee334e17e693c03b038017b7cc9f443 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 169 1.1E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_27200 6ee334e17e693c03b038017b7cc9f443 247 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 181 1.3E-6 T 13-10-2018 RAM_27200 6ee334e17e693c03b038017b7cc9f443 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 4.7E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_27200 6ee334e17e693c03b038017b7cc9f443 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 169 4.7E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_27200 6ee334e17e693c03b038017b7cc9f443 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 204 224 4.7E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_27200 6ee334e17e693c03b038017b7cc9f443 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 4.7E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_27200 6ee334e17e693c03b038017b7cc9f443 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 188 4.7E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_27200 6ee334e17e693c03b038017b7cc9f443 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 4.7E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_27200 6ee334e17e693c03b038017b7cc9f443 247 Gene3D G3DSA:3.40.50.720 1 245 5.4E-80 T 13-10-2018 RAM_27200 6ee334e17e693c03b038017b7cc9f443 247 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 241 2.2E-63 T 13-10-2018 RAM_22045 435a1dbcdae54bd0dc2ba52bc2c4b6af 341 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 63 77 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 RAM_22045 435a1dbcdae54bd0dc2ba52bc2c4b6af 341 Gene3D G3DSA:3.90.180.10 15 333 4.8E-101 T 13-10-2018 RAM_22045 435a1dbcdae54bd0dc2ba52bc2c4b6af 341 SUPERFAMILY SSF51735 143 309 8.46E-33 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_22045 435a1dbcdae54bd0dc2ba52bc2c4b6af 341 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 136 2.0E-32 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_22045 435a1dbcdae54bd0dc2ba52bc2c4b6af 341 SMART SM00829 10 339 0.0011 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_22045 435a1dbcdae54bd0dc2ba52bc2c4b6af 341 Gene3D G3DSA:3.40.50.720 151 290 4.8E-101 T 13-10-2018 RAM_22045 435a1dbcdae54bd0dc2ba52bc2c4b6af 341 SUPERFAMILY SSF50129 2 162 2.28E-48 T 13-10-2018 IPR011032 GroES-like superfamily RAM_22045 435a1dbcdae54bd0dc2ba52bc2c4b6af 341 Pfam PF00107 Zinc-binding dehydrogenase 179 303 1.3E-22 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RAM_28450 d1a587f0931e78a5f28882a18f608463 248 Gene3D G3DSA:1.10.10.10 176 234 9.4E-9 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_28450 d1a587f0931e78a5f28882a18f608463 248 SUPERFAMILY SSF55781 24 172 3.05E-23 T 13-10-2018 RAM_28450 d1a587f0931e78a5f28882a18f608463 248 PIRSF PIRSF036625 1 237 1.6E-60 T 13-10-2018 IPR012074 GAF-ANTAR transcription anti-termination regulator, putative RAM_28450 d1a587f0931e78a5f28882a18f608463 248 SMART SM00065 24 172 2.6E-9 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_28450 d1a587f0931e78a5f28882a18f608463 248 Pfam PF13185 GAF domain 24 162 3.3E-18 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_28450 d1a587f0931e78a5f28882a18f608463 248 SMART SM01012 174 229 8.7E-16 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 RAM_28450 d1a587f0931e78a5f28882a18f608463 248 Gene3D G3DSA:3.30.450.40 1 174 7.4E-26 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_28450 d1a587f0931e78a5f28882a18f608463 248 Pfam PF03861 ANTAR domain 176 228 2.2E-15 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 RAM_28450 d1a587f0931e78a5f28882a18f608463 248 SUPERFAMILY SSF52172 162 228 7.45E-7 T 13-10-2018 IPR011006 CheY-like superfamily RAM_34445 0c28b1c0b85206f7c97ab25556473371 518 Pfam PF09423 PhoD-like phosphatase 155 499 2.3E-76 T 13-10-2018 IPR018946 Alkaline phosphatase D-related RAM_34445 0c28b1c0b85206f7c97ab25556473371 518 Gene3D G3DSA:3.60.21.70 162 477 2.2E-59 T 13-10-2018 IPR038607 PhoD-like superfamily RAM_34445 0c28b1c0b85206f7c97ab25556473371 518 Pfam PF16655 PhoD-like phosphatase, N-terminal domain 49 139 1.1E-19 T 13-10-2018 IPR032093 Phospholipase D, N-terminal RAM_34445 0c28b1c0b85206f7c97ab25556473371 518 Gene3D G3DSA:2.60.40.380 42 142 2.5E-9 T 13-10-2018 IPR008963 Purple acid phosphatase-like, N-terminal GO:0003993|GO:0046872 RAM_34445 0c28b1c0b85206f7c97ab25556473371 518 SUPERFAMILY SSF56300 145 514 2.66E-33 T 13-10-2018 RAM_44065 f0c3215723c101819e775c88f742b44f 321 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 5 304 2.8E-25 T 13-10-2018 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type Reactome: R-HSA-446210 RAM_44065 f0c3215723c101819e775c88f742b44f 321 SUPERFAMILY SSF53067 117 305 4.78E-29 T 13-10-2018 RAM_44065 f0c3215723c101819e775c88f742b44f 321 Gene3D G3DSA:3.30.420.40 117 270 1.0E-50 T 13-10-2018 RAM_44065 f0c3215723c101819e775c88f742b44f 321 Gene3D G3DSA:3.30.420.40 5 116 1.0E-50 T 13-10-2018 RAM_44065 f0c3215723c101819e775c88f742b44f 321 SUPERFAMILY SSF53067 3 113 2.81E-14 T 13-10-2018 RAM_46965 9bf9622c7979c019a76bdd7b5eb95a32 161 Pfam PF12802 MarR family 38 96 1.3E-13 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_46965 9bf9622c7979c019a76bdd7b5eb95a32 161 Gene3D G3DSA:1.10.10.10 2 145 1.3E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_46965 9bf9622c7979c019a76bdd7b5eb95a32 161 SUPERFAMILY SSF46785 8 146 5.38E-26 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_46965 9bf9622c7979c019a76bdd7b5eb95a32 161 SMART SM00347 32 132 1.5E-14 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_46965 9bf9622c7979c019a76bdd7b5eb95a32 161 PRINTS PR00598 Bacterial regulatory protein MarR family signature 56 72 6.6E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_46965 9bf9622c7979c019a76bdd7b5eb95a32 161 PRINTS PR00598 Bacterial regulatory protein MarR family signature 73 88 6.6E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_46965 9bf9622c7979c019a76bdd7b5eb95a32 161 PRINTS PR00598 Bacterial regulatory protein MarR family signature 92 108 6.6E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_29550 b614ee2710015e1f0e98a9c0d93c3294 332 Gene3D G3DSA:1.10.260.40 1 56 4.0E-18 T 13-10-2018 RAM_29550 b614ee2710015e1f0e98a9c0d93c3294 332 Gene3D G3DSA:3.40.50.2300 157 326 9.0E-76 T 13-10-2018 RAM_29550 b614ee2710015e1f0e98a9c0d93c3294 332 ProSitePatterns PS00356 LacI-type HTH domain signature. 1 19 - T 13-10-2018 RAM_29550 b614ee2710015e1f0e98a9c0d93c3294 332 Pfam PF00356 Bacterial regulatory proteins, lacI family 1 45 3.7E-14 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_29550 b614ee2710015e1f0e98a9c0d93c3294 332 SMART SM00354 1 68 1.3E-12 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_29550 b614ee2710015e1f0e98a9c0d93c3294 332 SUPERFAMILY SSF47413 1 56 4.78E-14 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_29550 b614ee2710015e1f0e98a9c0d93c3294 332 SUPERFAMILY SSF53822 59 331 9.42E-67 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_29550 b614ee2710015e1f0e98a9c0d93c3294 332 Pfam PF13377 Periplasmic binding protein-like domain 165 329 5.8E-39 T 13-10-2018 RAM_29550 b614ee2710015e1f0e98a9c0d93c3294 332 Gene3D G3DSA:3.40.50.2300 65 321 9.0E-76 T 13-10-2018 RAM_43075 3778556866bb7a1d208c2cc4dae5e4ee 193 Pfam PF12840 Helix-turn-helix domain 20 71 2.5E-11 T 13-10-2018 RAM_43075 3778556866bb7a1d208c2cc4dae5e4ee 193 SUPERFAMILY SSF46785 14 106 1.07E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_43075 3778556866bb7a1d208c2cc4dae5e4ee 193 SMART SM00418 17 104 6.4E-8 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_43075 3778556866bb7a1d208c2cc4dae5e4ee 193 Gene3D G3DSA:1.10.10.10 7 99 1.2E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_20990 9f2aa7855f040c2d317d08938b195446 1137 Gene3D G3DSA:3.40.50.300 925 1109 1.1E-33 T 13-10-2018 RAM_20990 9f2aa7855f040c2d317d08938b195446 1137 SMART SM00382 739 1080 3.2E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_20990 9f2aa7855f040c2d317d08938b195446 1137 TIGRFAM TIGR03491 TIGR03491: putative RecB family nuclease, TM0106 family 12 480 1.7E-45 T 13-10-2018 IPR019993 RecB family nuclease, TM0106, putative RAM_20990 9f2aa7855f040c2d317d08938b195446 1137 SUPERFAMILY SSF52540 733 1094 3.68E-42 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_20990 9f2aa7855f040c2d317d08938b195446 1137 Pfam PF13482 RNase_H superfamily 314 480 2.2E-10 T 13-10-2018 IPR038720 YprB, ribonuclease H-like domain RAM_20990 9f2aa7855f040c2d317d08938b195446 1137 Gene3D G3DSA:3.40.50.300 729 906 2.8E-28 T 13-10-2018 RAM_20990 9f2aa7855f040c2d317d08938b195446 1137 Pfam PF13087 AAA domain 918 1091 9.2E-22 T 13-10-2018 RAM_20990 9f2aa7855f040c2d317d08938b195446 1137 Pfam PF13604 AAA domain 740 892 1.9E-12 T 13-10-2018 RAM_20950 c1e21e56b914c4d1f1c1645885804a46 485 SUPERFAMILY SSF56024 47 259 1.77E-38 T 13-10-2018 RAM_20950 c1e21e56b914c4d1f1c1645885804a46 485 Pfam PF13091 PLD-like domain 76 188 1.5E-7 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 RAM_20950 c1e21e56b914c4d1f1c1645885804a46 485 Pfam PF13091 PLD-like domain 278 409 1.8E-10 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 RAM_20950 c1e21e56b914c4d1f1c1645885804a46 485 Gene3D G3DSA:3.30.870.10 253 418 7.9E-18 T 13-10-2018 RAM_20950 c1e21e56b914c4d1f1c1645885804a46 485 SUPERFAMILY SSF56024 226 421 9.87E-25 T 13-10-2018 RAM_20950 c1e21e56b914c4d1f1c1645885804a46 485 SMART SM00155 364 391 0.25 T 13-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 RAM_20950 c1e21e56b914c4d1f1c1645885804a46 485 SMART SM00155 164 191 1.5 T 13-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 RAM_20950 c1e21e56b914c4d1f1c1645885804a46 485 Gene3D G3DSA:3.30.870.10 54 246 9.0E-30 T 13-10-2018 RAM_44415 33d8e573d4827181bbc0579dc07fa574 191 Gene3D G3DSA:1.10.10.10 102 186 1.6E-10 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_44415 33d8e573d4827181bbc0579dc07fa574 191 Pfam PF04542 Sigma-70 region 2 30 87 3.9E-7 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_44415 33d8e573d4827181bbc0579dc07fa574 191 SUPERFAMILY SSF88659 107 183 5.79E-10 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_44415 33d8e573d4827181bbc0579dc07fa574 191 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 25 182 2.6E-20 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_44415 33d8e573d4827181bbc0579dc07fa574 191 Gene3D G3DSA:1.10.1740.10 6 94 4.3E-12 T 13-10-2018 RAM_44415 33d8e573d4827181bbc0579dc07fa574 191 SUPERFAMILY SSF88946 9 114 1.07E-15 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_15490 aa683d5a32a877962586b55c555514c5 494 Gene3D G3DSA:3.40.605.10 23 458 9.6E-146 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RAM_15490 aa683d5a32a877962586b55c555514c5 494 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 4 481 2.5E-214 T 13-10-2018 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00640+1.2.1.27|MetaCyc: PWY-5642|Reactome: R-HSA-70895 RAM_15490 aa683d5a32a877962586b55c555514c5 494 Gene3D G3DSA:3.40.309.10 249 450 9.6E-146 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RAM_15490 aa683d5a32a877962586b55c555514c5 494 SUPERFAMILY SSF53720 3 483 1.57E-143 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RAM_15490 aa683d5a32a877962586b55c555514c5 494 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 274 285 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 RAM_15490 aa683d5a32a877962586b55c555514c5 494 Pfam PF00171 Aldehyde dehydrogenase family 18 477 3.0E-137 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RAM_23315 62dcab570d686d8a08d1f71e90f3527c 285 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 232 284 1.9E-18 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_23315 62dcab570d686d8a08d1f71e90f3527c 285 Pfam PF00037 4Fe-4S binding domain 194 211 3.5E-7 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RAM_23315 62dcab570d686d8a08d1f71e90f3527c 285 SMART SM00926 230 284 2.0E-16 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_23315 62dcab570d686d8a08d1f71e90f3527c 285 SUPERFAMILY SSF54862 86 218 2.26E-22 T 13-10-2018 RAM_23315 62dcab570d686d8a08d1f71e90f3527c 285 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 196 207 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RAM_23315 62dcab570d686d8a08d1f71e90f3527c 285 SUPERFAMILY SSF53706 194 283 2.15E-16 T 13-10-2018 RAM_23315 62dcab570d686d8a08d1f71e90f3527c 285 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 235 253 - T 13-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 RAM_23315 62dcab570d686d8a08d1f71e90f3527c 285 Gene3D G3DSA:3.30.70.20 133 214 7.2E-22 T 13-10-2018 RAM_23315 62dcab570d686d8a08d1f71e90f3527c 285 Gene3D G3DSA:2.20.25.90 231 284 1.5E-19 T 13-10-2018 RAM_23315 62dcab570d686d8a08d1f71e90f3527c 285 Gene3D G3DSA:3.10.20.740 12 115 9.7E-31 T 13-10-2018 RAM_23315 62dcab570d686d8a08d1f71e90f3527c 285 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 11 87 4.6E-24 T 13-10-2018 RAM_23315 62dcab570d686d8a08d1f71e90f3527c 285 SUPERFAMILY SSF54292 13 127 5.76E-31 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RAM_37850 c936fc040ee232e28bf260da3cf50d49 372 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 86 359 3.1E-69 T 13-10-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 RAM_37850 c936fc040ee232e28bf260da3cf50d49 372 SUPERFAMILY SSF161098 95 353 2.62E-36 T 13-10-2018 IPR035906 MetI-like superfamily RAM_37850 c936fc040ee232e28bf260da3cf50d49 372 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 159 358 2.4E-20 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_37850 c936fc040ee232e28bf260da3cf50d49 372 Gene3D G3DSA:1.10.3720.10 140 363 5.5E-32 T 13-10-2018 IPR035906 MetI-like superfamily RAM_06490 dfa6c429e3ec76c14933643652694883 374 Pfam PF01494 FAD binding domain 1 318 2.2E-17 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_06490 dfa6c429e3ec76c14933643652694883 374 SUPERFAMILY SSF51905 1 335 1.72E-57 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_06490 dfa6c429e3ec76c14933643652694883 374 Gene3D G3DSA:3.50.50.60 1 319 1.1E-86 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_06490 dfa6c429e3ec76c14933643652694883 374 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 271 287 3.9E-10 T 13-10-2018 RAM_06490 dfa6c429e3ec76c14933643652694883 374 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 135 150 3.9E-10 T 13-10-2018 RAM_06490 dfa6c429e3ec76c14933643652694883 374 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 256 271 3.9E-10 T 13-10-2018 RAM_06490 dfa6c429e3ec76c14933643652694883 374 Gene3D G3DSA:3.30.9.30 31 247 1.1E-86 T 13-10-2018 RAM_46525 a424c5d29c3de8f6d9542380e3c1dfaa 234 Pfam PF07729 FCD domain 100 219 4.2E-23 T 13-10-2018 IPR011711 GntR, C-terminal RAM_46525 a424c5d29c3de8f6d9542380e3c1dfaa 234 SUPERFAMILY SSF46785 5 75 3.41E-15 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_46525 a424c5d29c3de8f6d9542380e3c1dfaa 234 SUPERFAMILY SSF48008 99 228 1.23E-26 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_46525 a424c5d29c3de8f6d9542380e3c1dfaa 234 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 71 7.9E-12 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_46525 a424c5d29c3de8f6d9542380e3c1dfaa 234 SMART SM00345 13 71 2.8E-7 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_46525 a424c5d29c3de8f6d9542380e3c1dfaa 234 SMART SM00895 100 221 1.9E-25 T 13-10-2018 IPR011711 GntR, C-terminal RAM_46525 a424c5d29c3de8f6d9542380e3c1dfaa 234 Gene3D G3DSA:1.10.10.10 2 72 2.7E-14 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_46525 a424c5d29c3de8f6d9542380e3c1dfaa 234 Gene3D G3DSA:1.20.120.530 97 229 7.9E-29 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_04025 37ec1f2e3b09bf3248de0d9e56b73a55 226 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 196 8.0E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_04025 37ec1f2e3b09bf3248de0d9e56b73a55 226 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 166 180 8.0E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_04025 37ec1f2e3b09bf3248de0d9e56b73a55 226 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 196 208 8.0E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_04025 37ec1f2e3b09bf3248de0d9e56b73a55 226 SMART SM00448 13 127 3.1E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_04025 37ec1f2e3b09bf3248de0d9e56b73a55 226 ProSitePatterns PS00622 LuxR-type HTH domain signature. 180 207 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_04025 37ec1f2e3b09bf3248de0d9e56b73a55 226 SUPERFAMILY SSF46894 149 225 7.48E-23 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_04025 37ec1f2e3b09bf3248de0d9e56b73a55 226 Pfam PF00196 Bacterial regulatory proteins, luxR family 165 220 4.8E-18 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_04025 37ec1f2e3b09bf3248de0d9e56b73a55 226 SMART SM00421 163 220 1.6E-25 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_04025 37ec1f2e3b09bf3248de0d9e56b73a55 226 SUPERFAMILY SSF52172 12 145 3.98E-28 T 13-10-2018 IPR011006 CheY-like superfamily RAM_04025 37ec1f2e3b09bf3248de0d9e56b73a55 226 Pfam PF00072 Response regulator receiver domain 15 127 7.3E-21 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_04025 37ec1f2e3b09bf3248de0d9e56b73a55 226 Gene3D G3DSA:3.40.50.12740 13 226 7.5E-61 T 13-10-2018 RAM_32310 46488acf896da314fb8acd73d5dd60be 322 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 34 51 - T 13-10-2018 IPR020624 Schiff base-forming aldolase, conserved site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RAM_32310 46488acf896da314fb8acd73d5dd60be 322 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 1 274 3.6E-77 T 13-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RAM_32310 46488acf896da314fb8acd73d5dd60be 322 Pfam PF00701 Dihydrodipicolinate synthetase family 1 269 1.4E-78 T 13-10-2018 IPR002220 DapA-like GO:0016829 RAM_32310 46488acf896da314fb8acd73d5dd60be 322 SUPERFAMILY SSF51569 1 279 3.66E-90 T 13-10-2018 RAM_32310 46488acf896da314fb8acd73d5dd60be 322 PRINTS PR00146 Dihydrodipicolinate synthase signature 124 141 7.7E-28 T 13-10-2018 IPR002220 DapA-like GO:0016829 RAM_32310 46488acf896da314fb8acd73d5dd60be 322 PRINTS PR00146 Dihydrodipicolinate synthase signature 31 52 7.7E-28 T 13-10-2018 IPR002220 DapA-like GO:0016829 RAM_32310 46488acf896da314fb8acd73d5dd60be 322 PRINTS PR00146 Dihydrodipicolinate synthase signature 67 85 7.7E-28 T 13-10-2018 IPR002220 DapA-like GO:0016829 RAM_32310 46488acf896da314fb8acd73d5dd60be 322 PRINTS PR00146 Dihydrodipicolinate synthase signature 99 115 7.7E-28 T 13-10-2018 IPR002220 DapA-like GO:0016829 RAM_32310 46488acf896da314fb8acd73d5dd60be 322 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 1 281 55.363 T 13-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RAM_32310 46488acf896da314fb8acd73d5dd60be 322 SMART SM01130 1 282 1.6E-109 T 13-10-2018 IPR002220 DapA-like GO:0016829 RAM_32310 46488acf896da314fb8acd73d5dd60be 322 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 129 159 - T 13-10-2018 IPR020625 Schiff base-forming aldolase, active site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 RAM_32310 46488acf896da314fb8acd73d5dd60be 322 PIRSF PIRSF001365 1 284 1.8E-78 T 13-10-2018 IPR002220 DapA-like GO:0016829 RAM_32310 46488acf896da314fb8acd73d5dd60be 322 Gene3D G3DSA:3.20.20.70 1 284 6.0E-105 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_23405 a95fb29488eb6759a932bebc0a68e55b 943 Pfam PF02929 Beta galactosidase small chain 683 937 6.3E-59 T 13-10-2018 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_23405 a95fb29488eb6759a932bebc0a68e55b 943 SUPERFAMILY SSF49303 198 276 1.58E-10 T 13-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily RAM_23405 a95fb29488eb6759a932bebc0a68e55b 943 SUPERFAMILY SSF51445 277 556 4.09E-89 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_23405 a95fb29488eb6759a932bebc0a68e55b 943 SMART SM01038 676 940 4.5E-99 T 13-10-2018 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_23405 a95fb29488eb6759a932bebc0a68e55b 943 ProSitePatterns PS00719 Glycosyl hydrolases family 2 signature 1. 327 352 - T 13-10-2018 IPR023230 Glycoside hydrolase, family 2, conserved site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RAM_23405 a95fb29488eb6759a932bebc0a68e55b 943 Gene3D G3DSA:2.60.40.10 558 660 2.1E-31 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_23405 a95fb29488eb6759a932bebc0a68e55b 943 PRINTS PR00132 Glycosyl hydrolase family 2 signature 392 407 9.1E-31 T 13-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RAM_23405 a95fb29488eb6759a932bebc0a68e55b 943 PRINTS PR00132 Glycosyl hydrolase family 2 signature 286 300 9.1E-31 T 13-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RAM_23405 a95fb29488eb6759a932bebc0a68e55b 943 PRINTS PR00132 Glycosyl hydrolase family 2 signature 469 484 9.1E-31 T 13-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RAM_23405 a95fb29488eb6759a932bebc0a68e55b 943 PRINTS PR00132 Glycosyl hydrolase family 2 signature 122 137 9.1E-31 T 13-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RAM_23405 a95fb29488eb6759a932bebc0a68e55b 943 PRINTS PR00132 Glycosyl hydrolase family 2 signature 317 335 9.1E-31 T 13-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RAM_23405 a95fb29488eb6759a932bebc0a68e55b 943 ProSitePatterns PS00608 Glycosyl hydrolases family 2 acid/base catalyst. 392 406 - T 13-10-2018 IPR023232 Glycoside hydrolase, family 2, active site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RAM_23405 a95fb29488eb6759a932bebc0a68e55b 943 Gene3D G3DSA:2.70.98.10 668 942 2.9E-95 T 13-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 RAM_23405 a95fb29488eb6759a932bebc0a68e55b 943 SUPERFAMILY SSF74650 677 941 2.51E-78 T 13-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 RAM_23405 a95fb29488eb6759a932bebc0a68e55b 943 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 28 194 4.3E-38 T 13-10-2018 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_23405 a95fb29488eb6759a932bebc0a68e55b 943 Gene3D G3DSA:3.20.20.80 276 557 5.0E-111 T 13-10-2018 RAM_23405 a95fb29488eb6759a932bebc0a68e55b 943 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 277 561 1.5E-100 T 13-10-2018 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 RAM_23405 a95fb29488eb6759a932bebc0a68e55b 943 Gene3D G3DSA:2.60.120.260 14 195 7.0E-68 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_23405 a95fb29488eb6759a932bebc0a68e55b 943 Gene3D G3DSA:2.60.40.10 196 275 7.5E-13 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_23405 a95fb29488eb6759a932bebc0a68e55b 943 Pfam PF16353 Domain of unknown function(DUF4981) 569 654 2.3E-23 T 13-10-2018 IPR032312 Beta-galactosidase, domain 4 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_23405 a95fb29488eb6759a932bebc0a68e55b 943 SUPERFAMILY SSF49303 555 657 1.15E-26 T 13-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily RAM_23405 a95fb29488eb6759a932bebc0a68e55b 943 SUPERFAMILY SSF49785 13 194 2.98E-58 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 Gene3D G3DSA:3.30.70.3290 483 904 1.2E-155 T 13-10-2018 RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 SUPERFAMILY SSF55048 2364 2421 1.96E-11 T 13-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 SMART SM00826 923 1085 3.2E-79 T 13-10-2018 IPR020807 Polyketide synthase, dehydratase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 SMART SM00826 4207 4369 1.4E-84 T 13-10-2018 IPR020807 Polyketide synthase, dehydratase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 SMART SM00826 2592 2726 6.6E-48 T 13-10-2018 IPR020807 Polyketide synthase, dehydratase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 SUPERFAMILY SSF53901 32 406 1.01E-100 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 SUPERFAMILY SSF51735 4655 4840 1.24E-38 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 SUPERFAMILY SSF51735 1203 1332 2.72E-24 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 SUPERFAMILY SSF47336 1621 1732 2.36E-23 T 13-10-2018 IPR036736 ACP-like superfamily RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 SUPERFAMILY SSF51735 4488 4644 4.72E-30 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 SUPERFAMILY SSF51735 2818 2943 2.68E-22 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 SUPERFAMILY SSF51735 1345 1551 1.2E-40 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 SMART SM01294 4934 5001 9.9E-5 T 13-10-2018 RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 SMART SM01294 3233 3300 1.6E-5 T 13-10-2018 RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 SMART SM01294 1633 1693 5.5E-5 T 13-10-2018 RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 3849 4142 1.7E-109 T 13-10-2018 IPR020801 Polyketide synthase, acyl transferase domain RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 2243 2529 5.0E-111 T 13-10-2018 IPR020801 Polyketide synthase, acyl transferase domain RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 563 858 1.8E-119 T 13-10-2018 IPR020801 Polyketide synthase, acyl transferase domain RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 Gene3D G3DSA:3.30.70.3290 2162 2574 4.1E-146 T 13-10-2018 RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 3582 3697 6.3E-45 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 293 410 1.7E-43 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 1975 2090 9.0E-45 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 SUPERFAMILY SSF53901 1714 2087 5.26E-102 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 SUPERFAMILY SSF55048 685 750 2.49E-14 T 13-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 SUPERFAMILY SSF51735 2952 3169 1.81E-36 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 1346 1519 5.5E-49 T 13-10-2018 RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 2954 3126 9.3E-41 T 13-10-2018 RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 4657 4833 1.1E-43 T 13-10-2018 RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 SUPERFAMILY SSF53901 3321 3694 3.3E-101 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 Gene3D G3DSA:1.10.1200.10 3212 3305 3.5E-35 T 13-10-2018 IPR036736 ACP-like superfamily RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 Gene3D G3DSA:1.10.1200.10 1606 1698 1.8E-33 T 13-10-2018 IPR036736 ACP-like superfamily RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 Gene3D G3DSA:1.10.1200.10 4913 5005 2.3E-34 T 13-10-2018 IPR036736 ACP-like superfamily RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 SMART SM00825 Beta-ketoacyl synthase 1719 2143 2.3E-211 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 SMART SM00825 Beta-ketoacyl synthase 37 463 1.7E-200 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 SMART SM00825 Beta-ketoacyl synthase 3325 3750 4.1E-217 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 3487 3503 - T 13-10-2018 IPR018201 Beta-ketoacyl synthase, active site RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 Gene3D G3DSA:3.40.50.720 4487 4907 1.1E-114 T 13-10-2018 RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 SUPERFAMILY SSF52151 3845 4131 1.41E-63 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 ProSitePatterns PS00012 Phosphopantetheine attachment site. 3259 3274 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 2093 2186 5.5E-11 T 13-10-2018 IPR032821 Ketoacyl-synthetase, C-terminal extension Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 3700 3811 5.6E-12 T 13-10-2018 IPR032821 Ketoacyl-synthetase, C-terminal extension Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 413 499 3.8E-11 T 13-10-2018 IPR032821 Ketoacyl-synthetase, C-terminal extension Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 SUPERFAMILY SSF52151 559 854 2.88E-68 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 Gene3D G3DSA:3.40.50.720 1201 1592 5.7E-110 T 13-10-2018 RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 Gene3D G3DSA:3.40.50.720 2819 3200 5.6E-104 T 13-10-2018 RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 Gene3D G3DSA:3.30.70.3290 3768 4188 3.5E-152 T 13-10-2018 RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 Pfam PF08659 KR domain 4657 4831 4.1E-52 T 13-10-2018 IPR013968 Polyketide synthase, ketoreductase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 Pfam PF08659 KR domain 2954 3124 4.9E-45 T 13-10-2018 IPR013968 Polyketide synthase, ketoreductase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 Pfam PF08659 KR domain 1346 1517 1.2E-53 T 13-10-2018 IPR013968 Polyketide synthase, ketoreductase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 Gene3D G3DSA:3.40.366.10 3847 4145 3.5E-152 T 13-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 Gene3D G3DSA:3.40.366.10 561 861 1.2E-155 T 13-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 Gene3D G3DSA:3.40.366.10 2241 2532 4.1E-146 T 13-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 Gene3D G3DSA:3.10.129.110 912 1200 4.4E-115 T 13-10-2018 RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 Gene3D G3DSA:3.10.129.110 2718 2818 7.0E-24 T 13-10-2018 RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 Gene3D G3DSA:3.10.129.110 4196 4485 9.0E-117 T 13-10-2018 RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 Gene3D G3DSA:3.10.129.110 2581 2717 3.5E-43 T 13-10-2018 RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 SUPERFAMILY SSF47336 3228 3338 4.19E-26 T 13-10-2018 IPR036736 ACP-like superfamily RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 Gene3D G3DSA:3.40.47.10 3314 3767 3.1E-188 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 Gene3D G3DSA:3.40.47.10 27 482 6.7E-177 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 Gene3D G3DSA:3.40.47.10 1710 2161 1.4E-184 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 SMART SM00823 Phosphopantetheine attachment site 4933 5005 1.2E-33 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 SMART SM00823 Phosphopantetheine attachment site 1625 1697 1.9E-30 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 SMART SM00823 Phosphopantetheine attachment site 3232 3304 1.5E-33 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 Pfam PF00550 Phosphopantetheine attachment site 4935 5001 1.7E-11 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 Pfam PF00550 Phosphopantetheine attachment site 3234 3300 2.8E-12 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 Pfam PF00550 Phosphopantetheine attachment site 1628 1693 1.0E-12 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 1880 1896 - T 13-10-2018 IPR018201 Beta-ketoacyl synthase, active site RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1652 1667 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 SUPERFAMILY SSF47336 4926 5009 3.4E-21 T 13-10-2018 IPR036736 ACP-like superfamily RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 1717 1967 3.0E-90 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 3323 3574 1.9E-89 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 35 285 3.6E-84 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 SUPERFAMILY SSF52151 2239 2519 4.19E-66 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 Pfam PF00698 Acyl transferase domain 561 877 5.9E-85 T 13-10-2018 IPR014043 Acyl transferase RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 Pfam PF00698 Acyl transferase domain 3847 4160 2.8E-85 T 13-10-2018 IPR014043 Acyl transferase RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 Pfam PF00698 Acyl transferase domain 2241 2547 1.1E-78 T 13-10-2018 IPR014043 Acyl transferase RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 SUPERFAMILY SSF55048 3971 4036 3.92E-13 T 13-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 Pfam PF14765 Polyketide synthase dehydratase 4207 4480 4.2E-60 T 13-10-2018 IPR020807 Polyketide synthase, dehydratase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 Pfam PF14765 Polyketide synthase dehydratase 923 1195 9.8E-57 T 13-10-2018 IPR020807 Polyketide synthase, dehydratase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 Pfam PF14765 Polyketide synthase dehydratase 2592 2718 1.6E-15 T 13-10-2018 IPR020807 Polyketide synthase, dehydratase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_03160 d1b504d437c67794176cf5c19df7e202 5060 ProSitePatterns PS00012 Phosphopantetheine attachment site. 4960 4975 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_23185 2a48605453f78e07d50e8bf1280b8e91 178 Pfam PF03713 Domain of unknown function (DUF305) 37 174 2.0E-12 T 13-10-2018 IPR005183 Domain of unknown function DUF305 RAM_23185 2a48605453f78e07d50e8bf1280b8e91 178 Gene3D G3DSA:1.20.1260.10 26 177 3.7E-17 T 13-10-2018 IPR012347 Ferritin-like RAM_13275 35bd33f232c70f4609531968019b3e7e 221 Pfam PF02254 TrkA-N domain 3 116 4.9E-22 T 13-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 RAM_13275 35bd33f232c70f4609531968019b3e7e 221 Gene3D G3DSA:3.40.50.720 2 124 1.4E-28 T 13-10-2018 RAM_13275 35bd33f232c70f4609531968019b3e7e 221 Pfam PF02080 TrkA-C domain 155 211 9.8E-8 T 13-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RAM_13275 35bd33f232c70f4609531968019b3e7e 221 SUPERFAMILY SSF116726 142 212 2.62E-7 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RAM_13275 35bd33f232c70f4609531968019b3e7e 221 SUPERFAMILY SSF51735 2 139 1.08E-24 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_13275 35bd33f232c70f4609531968019b3e7e 221 Gene3D G3DSA:3.30.70.1450 143 217 3.7E-6 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RAM_13275 35bd33f232c70f4609531968019b3e7e 221 PRINTS PR00335 TrkA potassium uptake protein signature 2 16 6.3E-7 T 13-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 RAM_13275 35bd33f232c70f4609531968019b3e7e 221 PRINTS PR00335 TrkA potassium uptake protein signature 73 87 6.3E-7 T 13-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 RAM_13275 35bd33f232c70f4609531968019b3e7e 221 PRINTS PR00335 TrkA potassium uptake protein signature 60 70 6.3E-7 T 13-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 RAM_13275 35bd33f232c70f4609531968019b3e7e 221 PRINTS PR00335 TrkA potassium uptake protein signature 19 33 6.3E-7 T 13-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 RAM_07620 14ac850dc9013a8b0640711dcf0c26f1 292 Gene3D G3DSA:1.10.3720.10 47 270 5.9E-54 T 13-10-2018 IPR035906 MetI-like superfamily RAM_07620 14ac850dc9013a8b0640711dcf0c26f1 292 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 52 161 1.1E-19 T 13-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 RAM_07620 14ac850dc9013a8b0640711dcf0c26f1 292 SUPERFAMILY SSF161098 54 252 5.1E-44 T 13-10-2018 IPR035906 MetI-like superfamily RAM_07620 14ac850dc9013a8b0640711dcf0c26f1 292 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 72 265 4.3E-23 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_43140 06d2de284359dfe0dbd5cc8c970a1f94 389 SUPERFAMILY SSF47203 227 381 5.96E-53 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_43140 06d2de284359dfe0dbd5cc8c970a1f94 389 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 125 205 7.4E-22 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RAM_43140 06d2de284359dfe0dbd5cc8c970a1f94 389 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 127 139 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RAM_43140 06d2de284359dfe0dbd5cc8c970a1f94 389 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 229 378 7.0E-46 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_43140 06d2de284359dfe0dbd5cc8c970a1f94 389 Gene3D G3DSA:1.10.540.10 1 123 2.0E-26 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_43140 06d2de284359dfe0dbd5cc8c970a1f94 389 Gene3D G3DSA:2.40.110.10 124 233 7.5E-37 T 13-10-2018 RAM_43140 06d2de284359dfe0dbd5cc8c970a1f94 389 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 121 9.1E-21 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_43140 06d2de284359dfe0dbd5cc8c970a1f94 389 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 336 355 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RAM_43140 06d2de284359dfe0dbd5cc8c970a1f94 389 Gene3D G3DSA:1.20.140.10 234 386 8.9E-50 T 13-10-2018 RAM_43140 06d2de284359dfe0dbd5cc8c970a1f94 389 SUPERFAMILY SSF56645 1 242 1.31E-67 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_46985 addd9b848e9bc6ac9746f9d142e1a1a6 249 SUPERFAMILY SSF81296 32 173 9.52E-33 T 13-10-2018 IPR014756 Immunoglobulin E-set RAM_46985 addd9b848e9bc6ac9746f9d142e1a1a6 249 Gene3D G3DSA:2.70.50.50 32 173 6.8E-46 T 13-10-2018 RAM_46985 addd9b848e9bc6ac9746f9d142e1a1a6 249 SMART SM00495 203 249 5.4E-13 T 13-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 RAM_46985 addd9b848e9bc6ac9746f9d142e1a1a6 249 Pfam PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading 32 170 5.8E-15 T 13-10-2018 IPR004302 Cellulose/chitin-binding protein, N-terminal RAM_46985 addd9b848e9bc6ac9746f9d142e1a1a6 249 SUPERFAMILY SSF51055 206 248 1.44E-16 T 13-10-2018 IPR036573 Carbohydrate-binding module superfamily 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 RAM_46985 addd9b848e9bc6ac9746f9d142e1a1a6 249 Gene3D G3DSA:2.10.10.20 205 248 3.2E-23 T 13-10-2018 RAM_14790 53da8089360a4847777197f53c12fa44 156 TIGRFAM TIGR00026 hi_GC_TIGR00026: deazaflavin-dependent oxidoreductase, nitroreductase family 38 148 1.3E-28 T 13-10-2018 IPR004378 F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 RAM_14790 53da8089360a4847777197f53c12fa44 156 Gene3D G3DSA:2.30.110.10 6 150 1.0E-46 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_14790 53da8089360a4847777197f53c12fa44 156 Pfam PF04075 F420H(2)-dependent quinone reductase 19 149 3.8E-32 T 13-10-2018 IPR004378 F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 RAM_41735 a3f21c9f3fda5e977c530bbce4e78e1c 418 SUPERFAMILY SSF53850 20 417 3.83E-50 T 13-10-2018 RAM_41735 a3f21c9f3fda5e977c530bbce4e78e1c 418 Gene3D G3DSA:3.40.190.10 140 406 2.1E-65 T 13-10-2018 RAM_41735 a3f21c9f3fda5e977c530bbce4e78e1c 418 Pfam PF13416 Bacterial extracellular solute-binding protein 45 348 5.5E-28 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein RAM_41735 a3f21c9f3fda5e977c530bbce4e78e1c 418 Gene3D G3DSA:3.40.190.10 46 346 2.1E-65 T 13-10-2018 RAM_26865 84147d7ec68f34d640d2f14de89a756f 670 Gene3D G3DSA:3.40.50.300 422 669 2.1E-89 T 13-10-2018 RAM_26865 84147d7ec68f34d640d2f14de89a756f 670 SMART SM00382 451 637 1.5E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_26865 84147d7ec68f34d640d2f14de89a756f 670 Pfam PF00005 ABC transporter 443 591 3.9E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_26865 84147d7ec68f34d640d2f14de89a756f 670 SUPERFAMILY SSF52540 419 662 2.66E-87 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_26865 84147d7ec68f34d640d2f14de89a756f 670 Pfam PF00664 ABC transporter transmembrane region 70 380 6.2E-59 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 RAM_26865 84147d7ec68f34d640d2f14de89a756f 670 ProSitePatterns PS00211 ABC transporters family signature. 563 577 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_26865 84147d7ec68f34d640d2f14de89a756f 670 SUPERFAMILY SSF90123 51 413 6.15E-83 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RAM_14320 280e15dc021548e6a8c30cbdc636ce98 318 Gene3D G3DSA:3.90.180.10 6 314 4.6E-114 T 13-10-2018 RAM_14320 280e15dc021548e6a8c30cbdc636ce98 318 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 134 155 - T 13-10-2018 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 RAM_14320 280e15dc021548e6a8c30cbdc636ce98 318 SUPERFAMILY SSF50129 2 133 1.98E-35 T 13-10-2018 IPR011032 GroES-like superfamily RAM_14320 280e15dc021548e6a8c30cbdc636ce98 318 SUPERFAMILY SSF51735 105 268 5.26E-48 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_14320 280e15dc021548e6a8c30cbdc636ce98 318 Gene3D G3DSA:3.40.50.720 117 262 4.6E-114 T 13-10-2018 RAM_14320 280e15dc021548e6a8c30cbdc636ce98 318 Pfam PF00107 Zinc-binding dehydrogenase 145 249 6.0E-30 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RAM_14320 280e15dc021548e6a8c30cbdc636ce98 318 SMART SM00829 7 316 6.2E-22 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_14320 280e15dc021548e6a8c30cbdc636ce98 318 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 88 3.7E-9 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_23450 6752f78aaf25cf290784062b3585e77b 101 Gene3D G3DSA:1.10.1200.10 9 101 6.3E-11 T 13-10-2018 IPR036736 ACP-like superfamily RAM_23450 6752f78aaf25cf290784062b3585e77b 101 SUPERFAMILY SSF47336 21 97 2.88E-10 T 13-10-2018 IPR036736 ACP-like superfamily RAM_23450 6752f78aaf25cf290784062b3585e77b 101 Pfam PF00550 Phosphopantetheine attachment site 24 83 4.7E-7 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_28400 e4e30da2a73083cabe512f540e05efb4 331 SUPERFAMILY SSF51556 20 325 4.72E-71 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_28400 e4e30da2a73083cabe512f540e05efb4 331 Gene3D G3DSA:3.20.20.140 2 326 1.5E-87 T 13-10-2018 RAM_28400 e4e30da2a73083cabe512f540e05efb4 331 Pfam PF04909 Amidohydrolase 50 321 1.0E-39 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RAM_15915 a79c5c0cb3a883eb5d2729910aa41696 1012 Gene3D G3DSA:2.60.40.10 751 853 2.3E-22 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_15915 a79c5c0cb3a883eb5d2729910aa41696 1012 Gene3D G3DSA:2.60.40.10 196 309 6.6E-28 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_15915 a79c5c0cb3a883eb5d2729910aa41696 1012 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 40 193 1.4E-16 T 13-10-2018 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_15915 a79c5c0cb3a883eb5d2729910aa41696 1012 Gene3D G3DSA:2.60.120.260 870 1006 1.5E-10 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_15915 a79c5c0cb3a883eb5d2729910aa41696 1012 PRINTS PR00132 Glycosyl hydrolase family 2 signature 422 437 2.6E-12 T 13-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RAM_15915 a79c5c0cb3a883eb5d2729910aa41696 1012 PRINTS PR00132 Glycosyl hydrolase family 2 signature 352 370 2.6E-12 T 13-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RAM_15915 a79c5c0cb3a883eb5d2729910aa41696 1012 PRINTS PR00132 Glycosyl hydrolase family 2 signature 321 335 2.6E-12 T 13-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RAM_15915 a79c5c0cb3a883eb5d2729910aa41696 1012 PRINTS PR00132 Glycosyl hydrolase family 2 signature 126 141 2.6E-12 T 13-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RAM_15915 a79c5c0cb3a883eb5d2729910aa41696 1012 SUPERFAMILY SSF51445 306 623 9.5E-62 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_15915 a79c5c0cb3a883eb5d2729910aa41696 1012 Pfam PF16355 Domain of unknown function (DUF4982) 642 736 7.6E-20 T 13-10-2018 IPR032311 Domain of unknown function DUF4982 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_15915 a79c5c0cb3a883eb5d2729910aa41696 1012 SUPERFAMILY SSF49303 203 309 1.06E-19 T 13-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily RAM_15915 a79c5c0cb3a883eb5d2729910aa41696 1012 Pfam PF00703 Glycosyl hydrolases family 2 199 309 2.1E-17 T 13-10-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RAM_15915 a79c5c0cb3a883eb5d2729910aa41696 1012 SUPERFAMILY SSF49785 35 197 2.07E-43 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_15915 a79c5c0cb3a883eb5d2729910aa41696 1012 Gene3D G3DSA:3.20.20.80 311 628 4.9E-91 T 13-10-2018 RAM_15915 a79c5c0cb3a883eb5d2729910aa41696 1012 Gene3D G3DSA:2.60.120.260 30 195 1.7E-46 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_15915 a79c5c0cb3a883eb5d2729910aa41696 1012 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 317 531 3.6E-26 T 13-10-2018 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 RAM_08840 9e6b831456e90797bc223a0a36bbc9ee 454 SUPERFAMILY SSF53383 101 453 2.21E-65 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_08840 9e6b831456e90797bc223a0a36bbc9ee 454 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 41 55 1.6E-5 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_08840 9e6b831456e90797bc223a0a36bbc9ee 454 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 55 71 1.6E-5 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_08840 9e6b831456e90797bc223a0a36bbc9ee 454 Gene3D G3DSA:3.40.640.10 97 446 7.9E-83 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_08840 9e6b831456e90797bc223a0a36bbc9ee 454 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 81 1.3E-14 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_08840 9e6b831456e90797bc223a0a36bbc9ee 454 SMART SM00345 22 81 7.4E-14 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_08840 9e6b831456e90797bc223a0a36bbc9ee 454 SUPERFAMILY SSF46785 16 85 1.36E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_08840 9e6b831456e90797bc223a0a36bbc9ee 454 Gene3D G3DSA:1.10.10.10 9 82 3.1E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_08840 9e6b831456e90797bc223a0a36bbc9ee 454 Pfam PF00155 Aminotransferase class I and II 143 397 5.4E-12 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RAM_47975 1b22f362b1fbe9fa044da032e0ba761c 209 Pfam PF00583 Acetyltransferase (GNAT) family 45 131 3.3E-6 T 13-10-2018 IPR000182 GNAT domain RAM_47975 1b22f362b1fbe9fa044da032e0ba761c 209 SUPERFAMILY SSF55729 9 165 7.15E-12 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_47975 1b22f362b1fbe9fa044da032e0ba761c 209 Gene3D G3DSA:3.40.630.30 18 206 4.4E-11 T 13-10-2018 RAM_06105 10644ce7573ad1742fe940cc7e4a2fce 400 Gene3D G3DSA:3.40.190.10 164 297 3.3E-60 T 13-10-2018 RAM_06105 10644ce7573ad1742fe940cc7e4a2fce 400 Gene3D G3DSA:3.40.190.10 58 350 3.3E-60 T 13-10-2018 RAM_06105 10644ce7573ad1742fe940cc7e4a2fce 400 SUPERFAMILY SSF53850 52 399 7.92E-64 T 13-10-2018 RAM_06105 10644ce7573ad1742fe940cc7e4a2fce 400 Pfam PF13416 Bacterial extracellular solute-binding protein 75 344 5.4E-26 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein RAM_42175 570d163e78c11e928b6cd4c72f5bd4c0 267 SUPERFAMILY SSF52540 18 238 4.79E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_42175 570d163e78c11e928b6cd4c72f5bd4c0 267 Gene3D G3DSA:3.40.50.300 12 247 4.2E-59 T 13-10-2018 RAM_42175 570d163e78c11e928b6cd4c72f5bd4c0 267 SMART SM00382 42 227 1.1E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_42175 570d163e78c11e928b6cd4c72f5bd4c0 267 Pfam PF00005 ABC transporter 39 179 2.5E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_42545 0e45300b5426bb38de2ca015f08b2dda 143 SUPERFAMILY SSF55166 14 123 8.63E-23 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 RAM_42545 0e45300b5426bb38de2ca015f08b2dda 143 Gene3D G3DSA:3.30.1380.10 5 124 6.3E-16 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 RAM_42545 0e45300b5426bb38de2ca015f08b2dda 143 Pfam PF02557 D-alanyl-D-alanine carboxypeptidase 17 119 5.0E-10 T 13-10-2018 IPR003709 Peptidase M15B GO:0006508|GO:0008233 RAM_31180 ed4a044e85c6ef0cb6ba49cfe8aefe02 954 Gene3D G3DSA:1.10.8.280 292 409 8.0E-264 T 13-10-2018 RAM_31180 ed4a044e85c6ef0cb6ba49cfe8aefe02 954 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 5 935 0.0 T 13-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 RAM_31180 ed4a044e85c6ef0cb6ba49cfe8aefe02 954 Gene3D G3DSA:3.40.50.300 627 946 3.2E-144 T 13-10-2018 RAM_31180 ed4a044e85c6ef0cb6ba49cfe8aefe02 954 Gene3D G3DSA:1.20.1580.10 702 840 3.2E-144 T 13-10-2018 RAM_31180 ed4a044e85c6ef0cb6ba49cfe8aefe02 954 Gene3D G3DSA:3.40.50.300 6 606 8.0E-264 T 13-10-2018 RAM_31180 ed4a044e85c6ef0cb6ba49cfe8aefe02 954 ProSitePatterns PS00211 ABC transporters family signature. 498 512 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_31180 ed4a044e85c6ef0cb6ba49cfe8aefe02 954 Gene3D G3DSA:1.20.1580.10 91 503 8.0E-264 T 13-10-2018 RAM_31180 ed4a044e85c6ef0cb6ba49cfe8aefe02 954 SUPERFAMILY SSF52540 625 921 6.81E-50 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_31180 ed4a044e85c6ef0cb6ba49cfe8aefe02 954 Pfam PF00005 ABC transporter 635 870 9.2E-9 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_31180 ed4a044e85c6ef0cb6ba49cfe8aefe02 954 ProSitePatterns PS00211 ABC transporters family signature. 840 854 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_31180 ed4a044e85c6ef0cb6ba49cfe8aefe02 954 Gene3D G3DSA:3.30.190.20 131 245 8.0E-264 T 13-10-2018 RAM_31180 ed4a044e85c6ef0cb6ba49cfe8aefe02 954 Hamap MF_00205 UvrABC system protein A [uvrA]. 2 950 22.792 T 13-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 RAM_31180 ed4a044e85c6ef0cb6ba49cfe8aefe02 954 SUPERFAMILY SSF52540 10 580 5.43E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_26745 bf6b2e87f517838d683714514ad0bc1c 977 SUPERFAMILY SSF51445 307 630 5.47E-84 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_26745 bf6b2e87f517838d683714514ad0bc1c 977 PRINTS PR00133 Glycosyl hydrolase family 3 signature 424 440 6.5E-24 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_26745 bf6b2e87f517838d683714514ad0bc1c 977 PRINTS PR00133 Glycosyl hydrolase family 3 signature 455 471 6.5E-24 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_26745 bf6b2e87f517838d683714514ad0bc1c 977 PRINTS PR00133 Glycosyl hydrolase family 3 signature 353 369 6.5E-24 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_26745 bf6b2e87f517838d683714514ad0bc1c 977 PRINTS PR00133 Glycosyl hydrolase family 3 signature 378 397 6.5E-24 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_26745 bf6b2e87f517838d683714514ad0bc1c 977 PRINTS PR00133 Glycosyl hydrolase family 3 signature 529 547 6.5E-24 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_26745 bf6b2e87f517838d683714514ad0bc1c 977 Gene3D G3DSA:2.60.40.10 867 977 1.7E-34 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_26745 bf6b2e87f517838d683714514ad0bc1c 977 Gene3D G3DSA:3.40.50.1700 619 866 9.4E-72 T 13-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 RAM_26745 bf6b2e87f517838d683714514ad0bc1c 977 SMART SM01217 899 965 3.2E-28 T 13-10-2018 IPR026891 Fibronectin type III-like domain RAM_26745 bf6b2e87f517838d683714514ad0bc1c 977 SUPERFAMILY SSF52279 634 867 3.14E-54 T 13-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 RAM_26745 bf6b2e87f517838d683714514ad0bc1c 977 Pfam PF14310 Fibronectin type III-like domain 899 965 3.3E-21 T 13-10-2018 IPR026891 Fibronectin type III-like domain RAM_26745 bf6b2e87f517838d683714514ad0bc1c 977 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 353 596 5.2E-43 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_26745 bf6b2e87f517838d683714514ad0bc1c 977 Pfam PF00754 F5/8 type C domain 173 285 2.8E-24 T 13-10-2018 IPR000421 Coagulation factor 5/8 C-terminal domain RAM_26745 bf6b2e87f517838d683714514ad0bc1c 977 Pfam PF00754 F5/8 type C domain 38 150 4.0E-27 T 13-10-2018 IPR000421 Coagulation factor 5/8 C-terminal domain RAM_26745 bf6b2e87f517838d683714514ad0bc1c 977 Gene3D G3DSA:2.60.120.260 30 155 7.1E-38 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_26745 bf6b2e87f517838d683714514ad0bc1c 977 Gene3D G3DSA:2.60.120.260 162 289 4.0E-33 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_26745 bf6b2e87f517838d683714514ad0bc1c 977 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 634 864 2.7E-56 T 13-10-2018 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 RAM_26745 bf6b2e87f517838d683714514ad0bc1c 977 SUPERFAMILY SSF49785 30 155 1.06E-33 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_26745 bf6b2e87f517838d683714514ad0bc1c 977 Gene3D G3DSA:3.20.20.300 293 603 4.2E-100 T 13-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 RAM_26745 bf6b2e87f517838d683714514ad0bc1c 977 SUPERFAMILY SSF49785 173 289 1.84E-28 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_38775 324dacda43bf5f4f738bf352e8e346a3 460 Pfam PF01609 Transposase DDE domain 132 347 1.6E-27 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 RAM_38775 324dacda43bf5f4f738bf352e8e346a3 460 SUPERFAMILY SSF53098 133 352 5.69E-30 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily RAM_38775 324dacda43bf5f4f738bf352e8e346a3 460 Pfam PF13006 Insertion element 4 transposase N-terminal 15 107 2.3E-27 T 13-10-2018 IPR024473 Transposase, IS4, N-terminal RAM_18440 e26df1663052b24f2191377f36da9cb4 196 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 86 132 1.2E-4 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_18440 e26df1663052b24f2191377f36da9cb4 196 SUPERFAMILY SSF47203 86 176 1.59E-7 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_31365 1acfc70276a94ed2490ecb23dcc82a1d 134 SUPERFAMILY SSF69118 23 86 3.17E-10 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_31365 1acfc70276a94ed2490ecb23dcc82a1d 134 Gene3D G3DSA:1.20.1290.10 4 92 5.9E-9 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_01010 8e17b441173923c74b7c6c119240bda2 1033 Pfam PF13401 AAA domain 276 363 2.1E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_01010 8e17b441173923c74b7c6c119240bda2 1033 Gene3D G3DSA:1.10.10.10 1 92 3.1E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_01010 8e17b441173923c74b7c6c119240bda2 1033 SMART SM01043 96 241 2.1E-44 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_01010 8e17b441173923c74b7c6c119240bda2 1033 Pfam PF03704 Bacterial transcriptional activator domain 96 241 1.0E-38 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_01010 8e17b441173923c74b7c6c119240bda2 1033 SMART SM00028 870 903 21.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_01010 8e17b441173923c74b7c6c119240bda2 1033 SMART SM00028 101 134 56.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_01010 8e17b441173923c74b7c6c119240bda2 1033 SMART SM00028 912 945 160.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_01010 8e17b441173923c74b7c6c119240bda2 1033 SMART SM00028 830 863 38.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_01010 8e17b441173923c74b7c6c119240bda2 1033 SUPERFAMILY SSF48452 91 259 8.85E-37 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_01010 8e17b441173923c74b7c6c119240bda2 1033 SUPERFAMILY SSF46894 11 89 5.67E-11 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_01010 8e17b441173923c74b7c6c119240bda2 1033 Gene3D G3DSA:1.25.40.10 731 997 3.3E-23 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_01010 8e17b441173923c74b7c6c119240bda2 1033 Pfam PF00486 Transcriptional regulatory protein, C terminal 24 76 5.0E-8 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_01010 8e17b441173923c74b7c6c119240bda2 1033 SUPERFAMILY SSF52540 249 517 7.07E-19 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_01010 8e17b441173923c74b7c6c119240bda2 1033 SUPERFAMILY SSF48452 755 937 3.87E-14 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_01010 8e17b441173923c74b7c6c119240bda2 1033 PRINTS PR00364 Disease resistance protein signature 346 360 1.4E-6 T 13-10-2018 RAM_01010 8e17b441173923c74b7c6c119240bda2 1033 PRINTS PR00364 Disease resistance protein signature 452 466 1.4E-6 T 13-10-2018 RAM_01010 8e17b441173923c74b7c6c119240bda2 1033 PRINTS PR00364 Disease resistance protein signature 279 294 1.4E-6 T 13-10-2018 RAM_01010 8e17b441173923c74b7c6c119240bda2 1033 Gene3D G3DSA:1.25.40.10 93 278 2.3E-46 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_01010 8e17b441173923c74b7c6c119240bda2 1033 SMART SM00862 16 89 2.1E-8 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_29510 39d0ee9a7b2261dc06b4fa85ba03652a 334 Pfam PF13377 Periplasmic binding protein-like domain 165 329 4.7E-36 T 13-10-2018 RAM_29510 39d0ee9a7b2261dc06b4fa85ba03652a 334 SMART SM00354 1 69 6.7E-23 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_29510 39d0ee9a7b2261dc06b4fa85ba03652a 334 Gene3D G3DSA:3.40.50.2300 67 321 2.9E-71 T 13-10-2018 RAM_29510 39d0ee9a7b2261dc06b4fa85ba03652a 334 SUPERFAMILY SSF53822 59 332 5.5E-68 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_29510 39d0ee9a7b2261dc06b4fa85ba03652a 334 Pfam PF00356 Bacterial regulatory proteins, lacI family 2 46 1.3E-15 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_29510 39d0ee9a7b2261dc06b4fa85ba03652a 334 SUPERFAMILY SSF47413 1 56 1.52E-14 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_29510 39d0ee9a7b2261dc06b4fa85ba03652a 334 Gene3D G3DSA:1.10.260.40 1 57 1.4E-19 T 13-10-2018 RAM_29510 39d0ee9a7b2261dc06b4fa85ba03652a 334 ProSitePatterns PS00356 LacI-type HTH domain signature. 3 21 - T 13-10-2018 RAM_29510 39d0ee9a7b2261dc06b4fa85ba03652a 334 Gene3D G3DSA:3.40.50.2300 157 322 2.9E-71 T 13-10-2018 RAM_39910 e9c726fbae640867cf9bc36a58a728c5 194 Gene3D G3DSA:1.10.357.10 59 194 1.9E-35 T 13-10-2018 RAM_39910 e9c726fbae640867cf9bc36a58a728c5 194 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 40 63 1.5E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_39910 e9c726fbae640867cf9bc36a58a728c5 194 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 19 32 1.5E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_39910 e9c726fbae640867cf9bc36a58a728c5 194 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 65 1.1E-13 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_39910 e9c726fbae640867cf9bc36a58a728c5 194 Gene3D G3DSA:1.10.10.60 12 57 1.1E-16 T 13-10-2018 RAM_39910 e9c726fbae640867cf9bc36a58a728c5 194 Pfam PF16859 Bacterial transcriptional repressor C-terminal 78 186 1.4E-34 T 13-10-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RAM_39910 e9c726fbae640867cf9bc36a58a728c5 194 SUPERFAMILY SSF46689 13 70 3.19E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_39910 e9c726fbae640867cf9bc36a58a728c5 194 SUPERFAMILY SSF48498 78 192 8.9E-30 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_07810 ba4a327d4c2f02a2a81648d666a057a1 223 SUPERFAMILY SSF51735 3 189 1.72E-43 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_07810 ba4a327d4c2f02a2a81648d666a057a1 223 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 117 133 2.8E-19 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_07810 ba4a327d4c2f02a2a81648d666a057a1 223 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 68 79 2.8E-19 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_07810 ba4a327d4c2f02a2a81648d666a057a1 223 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 2.8E-19 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_07810 ba4a327d4c2f02a2a81648d666a057a1 223 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 143 162 2.8E-19 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_07810 ba4a327d4c2f02a2a81648d666a057a1 223 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 179 2.8E-19 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_07810 ba4a327d4c2f02a2a81648d666a057a1 223 Pfam PF00106 short chain dehydrogenase 3 184 1.7E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_07810 ba4a327d4c2f02a2a81648d666a057a1 223 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 130 158 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_07810 ba4a327d4c2f02a2a81648d666a057a1 223 Gene3D G3DSA:3.40.50.720 2 208 2.4E-45 T 13-10-2018 RAM_07810 ba4a327d4c2f02a2a81648d666a057a1 223 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 162 3.3E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_07810 ba4a327d4c2f02a2a81648d666a057a1 223 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 123 131 3.3E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_07810 ba4a327d4c2f02a2a81648d666a057a1 223 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 68 79 3.3E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15730 e2e5a972c14a0c936c42b093cdfc3d4a 749 Pfam PF01120 Alpha-L-fucosidase 31 399 2.1E-84 T 13-10-2018 IPR000933 Glycoside hydrolase, family 29 GO:0004560|GO:0005975 KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 RAM_15730 e2e5a972c14a0c936c42b093cdfc3d4a 749 Pfam PF16757 Alpha-L-fucosidase C-terminal domain 431 512 2.0E-7 T 13-10-2018 IPR031919 Alpha-L-fucosidase, C-terminal KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 RAM_15730 e2e5a972c14a0c936c42b093cdfc3d4a 749 Gene3D G3DSA:2.80.10.50 614 747 1.3E-25 T 13-10-2018 RAM_15730 e2e5a972c14a0c936c42b093cdfc3d4a 749 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 660 734 1.4E-12 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_15730 e2e5a972c14a0c936c42b093cdfc3d4a 749 Gene3D G3DSA:2.60.40.1180 403 518 1.9E-28 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta RAM_15730 e2e5a972c14a0c936c42b093cdfc3d4a 749 SUPERFAMILY SSF51445 35 402 1.28E-73 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_15730 e2e5a972c14a0c936c42b093cdfc3d4a 749 PRINTS PR00741 Glycosyl hydrolase family 29 signature 352 373 1.4E-12 T 13-10-2018 IPR016286 Alpha-L-fucosidase, metazoa-type GO:0004560|GO:0006004 KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 RAM_15730 e2e5a972c14a0c936c42b093cdfc3d4a 749 PRINTS PR00741 Glycosyl hydrolase family 29 signature 385 407 1.4E-12 T 13-10-2018 IPR016286 Alpha-L-fucosidase, metazoa-type GO:0004560|GO:0006004 KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 RAM_15730 e2e5a972c14a0c936c42b093cdfc3d4a 749 PRINTS PR00741 Glycosyl hydrolase family 29 signature 242 258 1.4E-12 T 13-10-2018 IPR016286 Alpha-L-fucosidase, metazoa-type GO:0004560|GO:0006004 KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 RAM_15730 e2e5a972c14a0c936c42b093cdfc3d4a 749 PRINTS PR00741 Glycosyl hydrolase family 29 signature 148 164 1.4E-12 T 13-10-2018 IPR016286 Alpha-L-fucosidase, metazoa-type GO:0004560|GO:0006004 KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 RAM_15730 e2e5a972c14a0c936c42b093cdfc3d4a 749 SMART SM00812 35 461 7.1E-128 T 13-10-2018 IPR000933 Glycoside hydrolase, family 29 GO:0004560|GO:0005975 KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 RAM_15730 e2e5a972c14a0c936c42b093cdfc3d4a 749 Gene3D G3DSA:3.20.20.80 31 402 2.1E-133 T 13-10-2018 RAM_15730 e2e5a972c14a0c936c42b093cdfc3d4a 749 SUPERFAMILY SSF50370 612 746 4.32E-26 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_15730 e2e5a972c14a0c936c42b093cdfc3d4a 749 Gene3D G3DSA:2.60.20.10 522 611 2.8E-12 T 13-10-2018 RAM_14475 c0053365150da0f4a6f9624800862c16 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 7.6E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_14475 c0053365150da0f4a6f9624800862c16 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 7.6E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_14475 c0053365150da0f4a6f9624800862c16 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 7.6E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_14475 c0053365150da0f4a6f9624800862c16 262 SUPERFAMILY SSF51735 8 260 3.14E-68 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_14475 c0053365150da0f4a6f9624800862c16 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 2.8E-29 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_14475 c0053365150da0f4a6f9624800862c16 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 2.8E-29 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_14475 c0053365150da0f4a6f9624800862c16 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 2.8E-29 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_14475 c0053365150da0f4a6f9624800862c16 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 223 243 2.8E-29 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_14475 c0053365150da0f4a6f9624800862c16 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 2.8E-29 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_14475 c0053365150da0f4a6f9624800862c16 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 2.8E-29 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_14475 c0053365150da0f4a6f9624800862c16 262 Gene3D G3DSA:3.40.50.720 1 262 2.1E-71 T 13-10-2018 RAM_14475 c0053365150da0f4a6f9624800862c16 262 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 258 1.0E-46 T 13-10-2018 RAM_42405 63e217336ad7bbead65fa130133797f8 315 Gene3D G3DSA:3.40.50.720 110 256 1.6E-87 T 13-10-2018 RAM_42405 63e217336ad7bbead65fa130133797f8 315 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 24 65 8.9E-5 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_42405 63e217336ad7bbead65fa130133797f8 315 SUPERFAMILY SSF51735 99 279 1.02E-45 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_42405 63e217336ad7bbead65fa130133797f8 315 Pfam PF00107 Zinc-binding dehydrogenase 138 256 1.1E-31 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RAM_42405 63e217336ad7bbead65fa130133797f8 315 Gene3D G3DSA:3.90.180.10 6 309 1.6E-87 T 13-10-2018 RAM_42405 63e217336ad7bbead65fa130133797f8 315 SMART SM00829 7 311 1.6E-31 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_42405 63e217336ad7bbead65fa130133797f8 315 SUPERFAMILY SSF50129 2 127 1.04E-28 T 13-10-2018 IPR011032 GroES-like superfamily RAM_39195 1c56569830cf29155f97aec0417089c9 379 SUPERFAMILY SSF56601 12 351 6.47E-52 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_39195 1c56569830cf29155f97aec0417089c9 379 Gene3D G3DSA:3.40.710.30 6 379 5.6E-111 T 13-10-2018 RAM_39195 1c56569830cf29155f97aec0417089c9 379 Pfam PF00144 Beta-lactamase 34 349 1.2E-47 T 13-10-2018 IPR001466 Beta-lactamase-related RAM_39755 178d0bc70435b3bb95c30dc73ac21baa 372 Gene3D G3DSA:3.40.640.10 4 254 9.5E-69 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_39755 178d0bc70435b3bb95c30dc73ac21baa 372 Gene3D G3DSA:3.90.1150.10 288 372 1.2E-24 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_39755 178d0bc70435b3bb95c30dc73ac21baa 372 Gene3D G3DSA:3.90.1150.10 255 287 1.4E-5 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_39755 178d0bc70435b3bb95c30dc73ac21baa 372 PIRSF PIRSF001434 1 372 2.1E-111 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 RAM_39755 178d0bc70435b3bb95c30dc73ac21baa 372 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 7 370 1.6E-90 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 RAM_39755 178d0bc70435b3bb95c30dc73ac21baa 372 SUPERFAMILY SSF53383 5 370 1.65E-78 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_00705 f948902b495c22d4258b3d233294ea75 177 SUPERFAMILY SSF46689 2 57 4.05E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_00705 f948902b495c22d4258b3d233294ea75 177 Pfam PF00440 Bacterial regulatory proteins, tetR family 2 42 4.5E-12 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_00705 f948902b495c22d4258b3d233294ea75 177 Gene3D G3DSA:1.10.357.10 1 169 3.9E-24 T 13-10-2018 RAM_35135 ab39e65723633c8021f05b46cea110f9 216 Pfam PF05988 Bacterial protein of unknown function (DUF899) 1 216 2.2E-69 T 13-10-2018 IPR010296 Protein of unknown function DUF899, thioredoxin-like RAM_35135 ab39e65723633c8021f05b46cea110f9 216 Gene3D G3DSA:3.40.30.10 40 180 1.2E-5 T 13-10-2018 RAM_35135 ab39e65723633c8021f05b46cea110f9 216 SUPERFAMILY SSF52833 48 171 9.86E-8 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RAM_07860 dd1a8d3b372837f57b74455775352e29 148 Pfam PF04075 F420H(2)-dependent quinone reductase 11 98 3.3E-11 T 13-10-2018 IPR004378 F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 RAM_07860 dd1a8d3b372837f57b74455775352e29 148 Gene3D G3DSA:2.30.110.10 17 142 1.6E-11 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_07860 dd1a8d3b372837f57b74455775352e29 148 TIGRFAM TIGR00026 hi_GC_TIGR00026: deazaflavin-dependent oxidoreductase, nitroreductase family 30 114 4.8E-14 T 13-10-2018 IPR004378 F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 RAM_09615 ba858073a04fd779d6aad98dab278df1 196 Pfam PF02669 K+-transporting ATPase, c chain 9 188 4.3E-53 T 13-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 RAM_09615 ba858073a04fd779d6aad98dab278df1 196 PIRSF PIRSF001296 4 194 1.0E-48 T 13-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 RAM_09615 ba858073a04fd779d6aad98dab278df1 196 Hamap MF_00276 Potassium-transporting ATPase KdpC subunit [kdpC]. 5 191 27.336 T 13-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 RAM_38545 f7499e70b834031779089e277bad6433 137 Pfam PF04686 Streptomyces sporulation and cell division protein, SsgA 26 120 1.8E-31 T 13-10-2018 IPR006776 Sporulation-specific cell division protein SsgB GO:0051301 RAM_38545 f7499e70b834031779089e277bad6433 137 Gene3D G3DSA:2.30.31.20 2 134 1.4E-42 T 13-10-2018 IPR038658 Sporulation-specific cell division protein SsgB superfamily RAM_20375 61320ca7f8a1123ebef3623c78de9c9a 195 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 63 1.3E-13 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_20375 61320ca7f8a1123ebef3623c78de9c9a 195 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 7.1E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_20375 61320ca7f8a1123ebef3623c78de9c9a 195 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 7.1E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_20375 61320ca7f8a1123ebef3623c78de9c9a 195 SUPERFAMILY SSF46689 6 76 4.51E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_20375 61320ca7f8a1123ebef3623c78de9c9a 195 Gene3D G3DSA:1.10.357.10 12 195 1.0E-45 T 13-10-2018 RAM_20375 61320ca7f8a1123ebef3623c78de9c9a 195 SUPERFAMILY SSF48498 81 189 1.67E-15 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_15880 205df16432b222cb562195fed004328f 243 Gene3D G3DSA:3.60.21.10 1 240 1.1E-16 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like RAM_15880 205df16432b222cb562195fed004328f 243 PIRSF PIRSF008292 1 234 3.9E-88 T 13-10-2018 IPR016538 Uncharacterised conserved protein UCP008292 RAM_15880 205df16432b222cb562195fed004328f 243 Pfam PF00149 Calcineurin-like phosphoesterase 1 203 1.5E-13 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 RAM_15880 205df16432b222cb562195fed004328f 243 SUPERFAMILY SSF56300 1 238 3.28E-32 T 13-10-2018 RAM_33480 2ff274a5f2ac6be0c35560fe1d81bbc0 742 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 142 725 1.6E-169 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 RAM_33480 2ff274a5f2ac6be0c35560fe1d81bbc0 742 Pfam PF00403 Heavy-metal-associated domain 2 58 1.6E-12 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 RAM_33480 2ff274a5f2ac6be0c35560fe1d81bbc0 742 ProSitePatterns PS01047 Heavy-metal-associated domain. 2 30 - T 13-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 RAM_33480 2ff274a5f2ac6be0c35560fe1d81bbc0 742 Gene3D G3DSA:3.30.70.100 1 60 2.6E-18 T 13-10-2018 RAM_33480 2ff274a5f2ac6be0c35560fe1d81bbc0 742 SUPERFAMILY SSF55008 2 62 1.44E-16 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 RAM_33480 2ff274a5f2ac6be0c35560fe1d81bbc0 742 Pfam PF00122 E1-E2 ATPase 226 401 3.4E-50 T 13-10-2018 RAM_33480 2ff274a5f2ac6be0c35560fe1d81bbc0 742 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 623 639 2.8E-8 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RAM_33480 2ff274a5f2ac6be0c35560fe1d81bbc0 742 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 654 679 2.8E-8 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RAM_33480 2ff274a5f2ac6be0c35560fe1d81bbc0 742 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 595 611 2.8E-8 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RAM_33480 2ff274a5f2ac6be0c35560fe1d81bbc0 742 Gene3D G3DSA:3.40.1110.10 434 555 5.2E-84 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 RAM_33480 2ff274a5f2ac6be0c35560fe1d81bbc0 742 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 188 725 5.0E-149 T 13-10-2018 RAM_33480 2ff274a5f2ac6be0c35560fe1d81bbc0 742 SUPERFAMILY SSF81653 228 323 2.88E-22 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 RAM_33480 2ff274a5f2ac6be0c35560fe1d81bbc0 742 Gene3D G3DSA:2.70.150.20 217 328 3.9E-34 T 13-10-2018 RAM_33480 2ff274a5f2ac6be0c35560fe1d81bbc0 742 Gene3D G3DSA:3.40.50.1000 404 675 5.2E-84 T 13-10-2018 IPR023214 HAD superfamily RAM_33480 2ff274a5f2ac6be0c35560fe1d81bbc0 742 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 423 437 1.2E-21 T 13-10-2018 RAM_33480 2ff274a5f2ac6be0c35560fe1d81bbc0 742 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 570 580 1.2E-21 T 13-10-2018 RAM_33480 2ff274a5f2ac6be0c35560fe1d81bbc0 742 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 273 287 1.2E-21 T 13-10-2018 RAM_33480 2ff274a5f2ac6be0c35560fe1d81bbc0 742 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 623 642 1.2E-21 T 13-10-2018 RAM_33480 2ff274a5f2ac6be0c35560fe1d81bbc0 742 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 646 658 1.2E-21 T 13-10-2018 RAM_33480 2ff274a5f2ac6be0c35560fe1d81bbc0 742 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 425 431 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 RAM_33480 2ff274a5f2ac6be0c35560fe1d81bbc0 742 SUPERFAMILY SSF56784 421 723 6.05E-52 T 13-10-2018 IPR036412 HAD-like superfamily RAM_33480 2ff274a5f2ac6be0c35560fe1d81bbc0 742 SUPERFAMILY SSF81665 183 698 6.15E-13 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 RAM_33480 2ff274a5f2ac6be0c35560fe1d81bbc0 742 Pfam PF00702 haloacid dehalogenase-like hydrolase 419 637 3.3E-46 T 13-10-2018 RAM_33480 2ff274a5f2ac6be0c35560fe1d81bbc0 742 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 197 706 8.7E-84 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RAM_05545 02b6441f82c1aa7672492cc90df323d4 162 Gene3D G3DSA:1.10.1740.10 1 77 2.8E-9 T 13-10-2018 RAM_05545 02b6441f82c1aa7672492cc90df323d4 162 Pfam PF04542 Sigma-70 region 2 15 69 6.6E-9 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_05545 02b6441f82c1aa7672492cc90df323d4 162 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 16 154 4.5E-19 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_05545 02b6441f82c1aa7672492cc90df323d4 162 SUPERFAMILY SSF88659 96 154 3.36E-14 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_05545 02b6441f82c1aa7672492cc90df323d4 162 Pfam PF08281 Sigma-70, region 4 98 150 4.2E-15 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_05545 02b6441f82c1aa7672492cc90df323d4 162 TIGRFAM TIGR02983 SigE-fam_strep: RNA polymerase sigma-70 factor, sigma-E family 5 156 2.2E-45 T 13-10-2018 IPR014325 RNA polymerase sigma-E factor, actinobacteria GO:0016987 RAM_05545 02b6441f82c1aa7672492cc90df323d4 162 SUPERFAMILY SSF88946 7 77 5.1E-10 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_05545 02b6441f82c1aa7672492cc90df323d4 162 Gene3D G3DSA:1.10.10.10 81 156 4.2E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_10325 a1521daf30ce1ec295524fa5001961b1 193 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 36 190 2.4E-19 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 RAM_10325 a1521daf30ce1ec295524fa5001961b1 193 Gene3D G3DSA:2.40.100.10 30 192 1.2E-29 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily RAM_10325 a1521daf30ce1ec295524fa5001961b1 193 SUPERFAMILY SSF50891 35 191 4.08E-28 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily RAM_10325 a1521daf30ce1ec295524fa5001961b1 193 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 144 159 1.5E-5 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 RAM_10325 a1521daf30ce1ec295524fa5001961b1 193 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 117 132 1.5E-5 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 RAM_00280 734762d2d4061b3f551ff8cfad31611e 143 SMART SM00240 70 120 2.5E-12 T 13-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 RAM_00280 734762d2d4061b3f551ff8cfad31611e 143 Pfam PF00498 FHA domain 72 135 1.0E-14 T 13-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 RAM_00280 734762d2d4061b3f551ff8cfad31611e 143 Gene3D G3DSA:2.60.200.20 28 142 5.7E-26 T 13-10-2018 RAM_00280 734762d2d4061b3f551ff8cfad31611e 143 SUPERFAMILY SSF49879 35 142 3.06E-25 T 13-10-2018 IPR008984 SMAD/FHA domain superfamily GO:0005515 RAM_23680 fcc7612dd31190c152fdaae7ebf34bea 322 Pfam PF13602 Zinc-binding dehydrogenase 207 320 2.3E-18 T 13-10-2018 RAM_23680 fcc7612dd31190c152fdaae7ebf34bea 322 SMART SM00829 13 320 1.4E-7 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_23680 fcc7612dd31190c152fdaae7ebf34bea 322 SUPERFAMILY SSF51735 118 296 2.27E-22 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_23680 fcc7612dd31190c152fdaae7ebf34bea 322 SUPERFAMILY SSF50129 1 144 8.07E-28 T 13-10-2018 IPR011032 GroES-like superfamily RAM_23680 fcc7612dd31190c152fdaae7ebf34bea 322 Gene3D G3DSA:3.90.180.10 11 318 1.6E-62 T 13-10-2018 RAM_23680 fcc7612dd31190c152fdaae7ebf34bea 322 Gene3D G3DSA:3.40.50.720 126 290 1.6E-62 T 13-10-2018 RAM_01035 b5a715676663ece181e3eda5443f8840 170 SUPERFAMILY SSF88946 4 73 4.32E-11 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_01035 b5a715676663ece181e3eda5443f8840 170 TIGRFAM TIGR02983 SigE-fam_strep: RNA polymerase sigma-70 factor, sigma-E family 4 155 5.5E-49 T 13-10-2018 IPR014325 RNA polymerase sigma-E factor, actinobacteria GO:0016987 RAM_01035 b5a715676663ece181e3eda5443f8840 170 SUPERFAMILY SSF88659 86 156 2.24E-14 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_01035 b5a715676663ece181e3eda5443f8840 170 Gene3D G3DSA:1.10.1740.10 1 77 1.0E-9 T 13-10-2018 RAM_01035 b5a715676663ece181e3eda5443f8840 170 Pfam PF04542 Sigma-70 region 2 12 74 4.8E-7 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_01035 b5a715676663ece181e3eda5443f8840 170 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 7 154 1.9E-18 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_01035 b5a715676663ece181e3eda5443f8840 170 Pfam PF08281 Sigma-70, region 4 101 153 5.7E-14 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_01035 b5a715676663ece181e3eda5443f8840 170 Gene3D G3DSA:1.10.10.10 78 159 8.4E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_06575 fbe91168a61d577b1e8b7e8315c9d752 423 Gene3D G3DSA:2.80.10.50 286 423 3.4E-36 T 13-10-2018 RAM_06575 fbe91168a61d577b1e8b7e8315c9d752 423 SUPERFAMILY SSF52317 32 275 7.78E-20 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_06575 fbe91168a61d577b1e8b7e8315c9d752 423 Pfam PF06283 Trehalose utilisation 39 248 4.2E-26 T 13-10-2018 IPR029010 ThuA-like domain RAM_06575 fbe91168a61d577b1e8b7e8315c9d752 423 SMART SM00458 285 423 4.4E-7 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_06575 fbe91168a61d577b1e8b7e8315c9d752 423 SUPERFAMILY SSF50370 283 421 1.37E-36 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_06575 fbe91168a61d577b1e8b7e8315c9d752 423 Gene3D G3DSA:3.40.50.880 24 276 5.6E-63 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_06575 fbe91168a61d577b1e8b7e8315c9d752 423 Pfam PF00652 Ricin-type beta-trefoil lectin domain 287 420 5.5E-19 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_08645 988d93e22e6a245509dbb960efb93dab 996 SMART SM00028 706 739 13.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_08645 988d93e22e6a245509dbb960efb93dab 996 SMART SM00028 826 859 0.041 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_08645 988d93e22e6a245509dbb960efb93dab 996 SMART SM00028 866 899 1.7 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_08645 988d93e22e6a245509dbb960efb93dab 996 SMART SM00028 786 819 31.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_08645 988d93e22e6a245509dbb960efb93dab 996 SMART SM00028 666 699 110.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_08645 988d93e22e6a245509dbb960efb93dab 996 SMART SM00028 944 977 69.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_08645 988d93e22e6a245509dbb960efb93dab 996 Pfam PF00931 NB-ARC domain 256 490 1.2E-7 T 13-10-2018 IPR002182 NB-ARC GO:0043531 Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-6798695|Reactome: R-HSA-6803207|Reactome: R-HSA-8953750 RAM_08645 988d93e22e6a245509dbb960efb93dab 996 Pfam PF13424 Tetratricopeptide repeat 826 895 1.5E-10 T 13-10-2018 RAM_08645 988d93e22e6a245509dbb960efb93dab 996 Gene3D G3DSA:1.25.40.10 625 822 1.3E-25 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_08645 988d93e22e6a245509dbb960efb93dab 996 Gene3D G3DSA:3.30.70.1230 5 154 5.1E-8 T 13-10-2018 IPR029787 Nucleotide cyclase RAM_08645 988d93e22e6a245509dbb960efb93dab 996 SUPERFAMILY SSF48452 773 976 4.86E-22 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_08645 988d93e22e6a245509dbb960efb93dab 996 SUPERFAMILY SSF55073 5 136 4.24E-7 T 13-10-2018 IPR029787 Nucleotide cyclase RAM_08645 988d93e22e6a245509dbb960efb93dab 996 SUPERFAMILY SSF52540 220 485 3.84E-27 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_08645 988d93e22e6a245509dbb960efb93dab 996 SUPERFAMILY SSF48452 637 777 2.84E-11 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_08645 988d93e22e6a245509dbb960efb93dab 996 PRINTS PR00364 Disease resistance protein signature 256 271 4.2E-8 T 13-10-2018 RAM_08645 988d93e22e6a245509dbb960efb93dab 996 PRINTS PR00364 Disease resistance protein signature 335 349 4.2E-8 T 13-10-2018 RAM_08645 988d93e22e6a245509dbb960efb93dab 996 PRINTS PR00364 Disease resistance protein signature 418 432 4.2E-8 T 13-10-2018 RAM_08645 988d93e22e6a245509dbb960efb93dab 996 Gene3D G3DSA:1.25.40.10 823 995 1.3E-25 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_08645 988d93e22e6a245509dbb960efb93dab 996 Gene3D G3DSA:3.40.50.300 217 380 1.3E-24 T 13-10-2018 RAM_30085 07aa584c28262d6641c8b989e67c76b2 204 Pfam PF02517 CAAX protease self-immunity 103 180 3.4E-7 T 13-10-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 RAM_30775 304b3ea21c9d2fbf632e9e4e3c657853 122 Pfam PF14087 Domain of unknown function (DUF4267) 13 118 3.6E-23 T 13-10-2018 IPR025363 Protein of unknown function DUF4267 RAM_25905 dc0ac92ad45298b1eda0b3f12a11d34b 641 Gene3D G3DSA:3.40.50.1220 301 458 3.0E-96 T 13-10-2018 RAM_25905 dc0ac92ad45298b1eda0b3f12a11d34b 641 SUPERFAMILY SSF50022 1 104 4.32E-23 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RAM_25905 dc0ac92ad45298b1eda0b3f12a11d34b 641 SUPERFAMILY SSF52518 108 285 1.52E-45 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_25905 dc0ac92ad45298b1eda0b3f12a11d34b 641 SUPERFAMILY SSF52518 466 638 1.41E-49 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_25905 dc0ac92ad45298b1eda0b3f12a11d34b 641 Gene3D G3DSA:3.40.50.970 109 283 1.2E-54 T 13-10-2018 RAM_25905 dc0ac92ad45298b1eda0b3f12a11d34b 641 SUPERFAMILY SSF52467 294 459 1.33E-41 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily RAM_25905 dc0ac92ad45298b1eda0b3f12a11d34b 641 Gene3D G3DSA:3.40.50.970 459 632 3.0E-96 T 13-10-2018 RAM_25905 dc0ac92ad45298b1eda0b3f12a11d34b 641 Pfam PF00355 Rieske [2Fe-2S] domain 9 76 9.6E-13 T 13-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RAM_25905 dc0ac92ad45298b1eda0b3f12a11d34b 641 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 301 428 3.2E-33 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 RAM_25905 dc0ac92ad45298b1eda0b3f12a11d34b 641 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 489 632 6.3E-30 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RAM_25905 dc0ac92ad45298b1eda0b3f12a11d34b 641 Gene3D G3DSA:2.102.10.10 2 108 2.0E-22 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RAM_25905 dc0ac92ad45298b1eda0b3f12a11d34b 641 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 525 544 - T 13-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 RAM_25905 dc0ac92ad45298b1eda0b3f12a11d34b 641 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 110 279 7.3E-46 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RAM_33100 c2ebdd0001095854986bef3dd129a8ca 432 Gene3D G3DSA:3.40.50.2000 1 247 4.5E-35 T 13-10-2018 RAM_33100 c2ebdd0001095854986bef3dd129a8ca 432 Pfam PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 173 404 1.0E-8 T 13-10-2018 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0016758 Reactome: R-HSA-156588 RAM_33100 c2ebdd0001095854986bef3dd129a8ca 432 Gene3D G3DSA:3.40.50.2000 248 410 1.3E-43 T 13-10-2018 RAM_33100 c2ebdd0001095854986bef3dd129a8ca 432 SUPERFAMILY SSF53756 3 423 1.19E-72 T 13-10-2018 RAM_30700 30ac1c839cf98d1372625c92a27a38bc 182 SUPERFAMILY SSF50475 20 145 7.65E-18 T 13-10-2018 RAM_30700 30ac1c839cf98d1372625c92a27a38bc 182 TIGRFAM TIGR04025 PPOX_FMN_DR2398: pyridoxamine 5'-phosphate oxidase, FMN-binding family 3 178 3.6E-67 T 13-10-2018 IPR024029 Pyridoxamine 5-phosphate oxidase, FMN-dependent RAM_30700 30ac1c839cf98d1372625c92a27a38bc 182 Gene3D G3DSA:2.30.110.10 10 135 2.8E-25 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_30700 30ac1c839cf98d1372625c92a27a38bc 182 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 11 103 5.8E-15 T 13-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RAM_39365 c181a83d8d8ca1986b05894fe35c3f60 146 Pfam PF00583 Acetyltransferase (GNAT) family 35 129 1.8E-16 T 13-10-2018 IPR000182 GNAT domain RAM_39365 c181a83d8d8ca1986b05894fe35c3f60 146 Gene3D G3DSA:3.40.630.30 1 142 8.4E-34 T 13-10-2018 RAM_39365 c181a83d8d8ca1986b05894fe35c3f60 146 SUPERFAMILY SSF55729 2 130 1.59E-28 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_31120 dc507f95936eabf913eedb040386a46a 455 Gene3D G3DSA:3.30.379.10 23 85 1.8E-10 T 13-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 RAM_31120 dc507f95936eabf913eedb040386a46a 455 Pfam PF02838 Glycosyl hydrolase family 20, domain 2 29 90 2.5E-8 T 13-10-2018 IPR015882 Beta-hexosaminidase, bacterial type, N-terminal RAM_31120 dc507f95936eabf913eedb040386a46a 455 Pfam PF00728 Glycosyl hydrolase family 20, catalytic domain 94 266 1.2E-60 T 13-10-2018 IPR015883 Glycoside hydrolase family 20, catalytic domain GO:0004553|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 RAM_31120 dc507f95936eabf913eedb040386a46a 455 Pfam PF00728 Glycosyl hydrolase family 20, catalytic domain 272 408 5.4E-26 T 13-10-2018 IPR015883 Glycoside hydrolase family 20, catalytic domain GO:0004553|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 RAM_31120 dc507f95936eabf913eedb040386a46a 455 PRINTS PR00738 Glycosyl hydrolase family 20 signature 372 388 2.0E-39 T 13-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RAM_31120 dc507f95936eabf913eedb040386a46a 455 PRINTS PR00738 Glycosyl hydrolase family 20 signature 186 203 2.0E-39 T 13-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RAM_31120 dc507f95936eabf913eedb040386a46a 455 PRINTS PR00738 Glycosyl hydrolase family 20 signature 390 407 2.0E-39 T 13-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RAM_31120 dc507f95936eabf913eedb040386a46a 455 PRINTS PR00738 Glycosyl hydrolase family 20 signature 47 67 2.0E-39 T 13-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RAM_31120 dc507f95936eabf913eedb040386a46a 455 PRINTS PR00738 Glycosyl hydrolase family 20 signature 88 105 2.0E-39 T 13-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RAM_31120 dc507f95936eabf913eedb040386a46a 455 PRINTS PR00738 Glycosyl hydrolase family 20 signature 117 138 2.0E-39 T 13-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RAM_31120 dc507f95936eabf913eedb040386a46a 455 PRINTS PR00738 Glycosyl hydrolase family 20 signature 254 267 2.0E-39 T 13-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RAM_31120 dc507f95936eabf913eedb040386a46a 455 Gene3D G3DSA:3.20.20.80 86 439 4.7E-112 T 13-10-2018 RAM_31120 dc507f95936eabf913eedb040386a46a 455 SUPERFAMILY SSF55545 5 93 1.92E-12 T 13-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 RAM_31120 dc507f95936eabf913eedb040386a46a 455 SUPERFAMILY SSF51445 94 420 8.12E-96 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_39865 8313ab6c6acd723bc5009473d22f8222 186 SUPERFAMILY SSF52499 3 185 2.75E-42 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 RAM_39865 8313ab6c6acd723bc5009473d22f8222 186 Gene3D G3DSA:3.40.50.850 1 186 5.0E-52 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 RAM_39865 8313ab6c6acd723bc5009473d22f8222 186 Pfam PF00857 Isochorismatase family 5 150 1.3E-29 T 13-10-2018 IPR000868 Isochorismatase-like GO:0003824 RAM_20085 8d77710289a357c0fbc1af36775f3880 163 SUPERFAMILY SSF52833 10 147 8.99E-9 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RAM_20085 8d77710289a357c0fbc1af36775f3880 163 Gene3D G3DSA:3.40.30.10 23 157 6.9E-6 T 13-10-2018 RAM_27720 1ceffe9ee0d394866b1d7f7f5d843768 184 Pfam PF03551 Transcriptional regulator PadR-like family 12 87 8.3E-11 T 13-10-2018 IPR005149 Transcription regulator PadR, N-terminal RAM_27720 1ceffe9ee0d394866b1d7f7f5d843768 184 SUPERFAMILY SSF46785 10 176 3.46E-27 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_27720 1ceffe9ee0d394866b1d7f7f5d843768 184 Gene3D G3DSA:1.10.10.10 2 103 7.9E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_35860 633cef6dfa49e7056689579fce3ef68e 281 Gene3D G3DSA:3.30.386.10 71 165 2.3E-101 T 13-10-2018 IPR023099 Glycoside hydrolase, family 46, N-terminal GO:0005975|GO:0016977 KEGG: 00520+3.2.1.132 RAM_35860 633cef6dfa49e7056689579fce3ef68e 281 ProSitePatterns PS60000 Chitosanases families 46 and 80 active sites signature. 66 101 - T 13-10-2018 IPR000400 Glycoside hydrolase, family 46 GO:0005576|GO:0005975|GO:0016977 KEGG: 00520+3.2.1.132 RAM_35860 633cef6dfa49e7056689579fce3ef68e 281 Pfam PF01374 Glycosyl hydrolase family 46 60 269 1.7E-101 T 13-10-2018 IPR000400 Glycoside hydrolase, family 46 GO:0005576|GO:0005975|GO:0016977 KEGG: 00520+3.2.1.132 RAM_35860 633cef6dfa49e7056689579fce3ef68e 281 SUPERFAMILY SSF53955 48 281 3.66E-92 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily RAM_35860 633cef6dfa49e7056689579fce3ef68e 281 Gene3D G3DSA:1.20.141.10 55 278 2.3E-101 T 13-10-2018 RAM_35860 633cef6dfa49e7056689579fce3ef68e 281 PIRSF PIRSF036551 1 281 1.8E-114 T 13-10-2018 IPR000400 Glycoside hydrolase, family 46 GO:0005576|GO:0005975|GO:0016977 KEGG: 00520+3.2.1.132 RAM_01525 6b96c065cca589b0e6efe883f79019e6 187 SUPERFAMILY SSF48498 77 187 3.04E-8 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_01525 6b96c065cca589b0e6efe883f79019e6 187 Gene3D G3DSA:1.10.357.10 1 186 1.7E-28 T 13-10-2018 RAM_01525 6b96c065cca589b0e6efe883f79019e6 187 Pfam PF00440 Bacterial regulatory proteins, tetR family 7 52 1.2E-13 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_01525 6b96c065cca589b0e6efe883f79019e6 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 51 7.2E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_01525 6b96c065cca589b0e6efe883f79019e6 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 7 20 7.2E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_01525 6b96c065cca589b0e6efe883f79019e6 187 SUPERFAMILY SSF46689 4 73 3.3E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_19965 54245d0b57281f72731aa0cfc19f712b 376 Gene3D G3DSA:3.40.50.10490 189 364 6.7E-54 T 13-10-2018 RAM_19965 54245d0b57281f72731aa0cfc19f712b 376 Pfam PF01380 SIS domain 46 179 2.3E-16 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 RAM_19965 54245d0b57281f72731aa0cfc19f712b 376 Gene3D G3DSA:3.40.50.10490 4 188 1.9E-48 T 13-10-2018 RAM_19965 54245d0b57281f72731aa0cfc19f712b 376 SUPERFAMILY SSF53697 12 361 1.81E-43 T 13-10-2018 RAM_01530 1ac0cbdbe34d8db8df8aa458792716d3 202 Gene3D G3DSA:3.40.50.720 1 202 2.0E-45 T 13-10-2018 RAM_01530 1ac0cbdbe34d8db8df8aa458792716d3 202 Pfam PF13460 NAD(P)H-binding 7 190 1.8E-45 T 13-10-2018 IPR016040 NAD(P)-binding domain RAM_01530 1ac0cbdbe34d8db8df8aa458792716d3 202 SUPERFAMILY SSF51735 1 200 1.58E-38 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_01790 3e91500b8f177d6f58815e68276c7058 448 SUPERFAMILY SSF56349 78 436 9.71E-51 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RAM_01790 3e91500b8f177d6f58815e68276c7058 448 Pfam PF00589 Phage integrase family 314 429 1.6E-16 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RAM_01790 3e91500b8f177d6f58815e68276c7058 448 Gene3D G3DSA:1.10.150.130 74 191 3.8E-20 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal RAM_06695 07933e66255288499234562272b57be3 251 SUPERFAMILY SSF53335 30 251 4.91E-18 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_06695 07933e66255288499234562272b57be3 251 Pfam PF08241 Methyltransferase domain 55 138 3.1E-7 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 RAM_06695 07933e66255288499234562272b57be3 251 Gene3D G3DSA:3.40.50.150 24 199 2.1E-11 T 13-10-2018 RAM_38695 ab0425f42ecc3a61e9d8f4366fb5d53e 231 SUPERFAMILY SSF53335 24 212 1.35E-25 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_38695 ab0425f42ecc3a61e9d8f4366fb5d53e 231 Gene3D G3DSA:3.40.50.150 18 183 4.8E-26 T 13-10-2018 RAM_38695 ab0425f42ecc3a61e9d8f4366fb5d53e 231 Pfam PF08241 Methyltransferase domain 41 129 1.4E-15 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 RAM_32685 aec4a45858930ebc8561f7b41dfdc01a 162 SUPERFAMILY SSF88946 4 64 2.04E-6 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_32685 aec4a45858930ebc8561f7b41dfdc01a 162 Gene3D G3DSA:1.10.10.10 78 152 9.0E-12 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_32685 aec4a45858930ebc8561f7b41dfdc01a 162 SUPERFAMILY SSF88659 72 149 4.36E-11 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_32685 aec4a45858930ebc8561f7b41dfdc01a 162 Pfam PF08281 Sigma-70, region 4 97 146 5.9E-9 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_45075 b8a0ae749488f13375e5369208c9f73c 401 Pfam PF00589 Phage integrase family 180 367 1.3E-20 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RAM_45075 b8a0ae749488f13375e5369208c9f73c 401 Gene3D G3DSA:1.10.150.130 66 171 4.1E-19 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal RAM_45075 b8a0ae749488f13375e5369208c9f73c 401 Pfam PF14659 Phage integrase, N-terminal SAM-like domain 71 128 2.9E-7 T 13-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 RAM_45075 b8a0ae749488f13375e5369208c9f73c 401 Gene3D G3DSA:1.10.443.10 179 382 2.8E-35 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 RAM_45075 b8a0ae749488f13375e5369208c9f73c 401 SUPERFAMILY SSF56349 71 367 6.18E-52 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RAM_01420 238ea7d1ed9ba1a94fb72985968e519e 347 Pfam PF13374 Tetratricopeptide repeat 120 146 0.0032 T 13-10-2018 RAM_01420 238ea7d1ed9ba1a94fb72985968e519e 347 Pfam PF13432 Tetratricopeptide repeat 187 245 1.3E-5 T 13-10-2018 RAM_01420 238ea7d1ed9ba1a94fb72985968e519e 347 Gene3D G3DSA:1.25.40.10 68 191 1.2E-19 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_01420 238ea7d1ed9ba1a94fb72985968e519e 347 Gene3D G3DSA:1.25.40.10 1 67 8.0E-9 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_01420 238ea7d1ed9ba1a94fb72985968e519e 347 Gene3D G3DSA:1.25.40.10 193 347 3.7E-31 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_01420 238ea7d1ed9ba1a94fb72985968e519e 347 SUPERFAMILY SSF81901 153 336 4.53E-33 T 13-10-2018 RAM_01420 238ea7d1ed9ba1a94fb72985968e519e 347 SUPERFAMILY SSF81901 14 191 4.45E-24 T 13-10-2018 RAM_01420 238ea7d1ed9ba1a94fb72985968e519e 347 Pfam PF07721 Tetratricopeptide repeat 23 46 0.69 T 13-10-2018 IPR011717 Tetratricopeptide TPR-4 GO:0042802 RAM_01420 238ea7d1ed9ba1a94fb72985968e519e 347 Pfam PF07721 Tetratricopeptide repeat 58 78 0.85 T 13-10-2018 IPR011717 Tetratricopeptide TPR-4 GO:0042802 RAM_01420 238ea7d1ed9ba1a94fb72985968e519e 347 Pfam PF07721 Tetratricopeptide repeat 152 174 0.0031 T 13-10-2018 IPR011717 Tetratricopeptide TPR-4 GO:0042802 RAM_01420 238ea7d1ed9ba1a94fb72985968e519e 347 SMART SM00671 214 245 0.45 T 13-10-2018 IPR006597 Sel1-like repeat RAM_01420 238ea7d1ed9ba1a94fb72985968e519e 347 SMART SM00671 118 149 40.0 T 13-10-2018 IPR006597 Sel1-like repeat RAM_01420 238ea7d1ed9ba1a94fb72985968e519e 347 SMART SM00671 278 309 0.52 T 13-10-2018 IPR006597 Sel1-like repeat RAM_01420 238ea7d1ed9ba1a94fb72985968e519e 347 SMART SM00671 54 85 200.0 T 13-10-2018 IPR006597 Sel1-like repeat RAM_01420 238ea7d1ed9ba1a94fb72985968e519e 347 SMART SM00671 22 53 8.6 T 13-10-2018 IPR006597 Sel1-like repeat RAM_01420 238ea7d1ed9ba1a94fb72985968e519e 347 SMART SM00671 246 277 0.0072 T 13-10-2018 IPR006597 Sel1-like repeat RAM_01420 238ea7d1ed9ba1a94fb72985968e519e 347 SMART SM00671 150 181 140.0 T 13-10-2018 IPR006597 Sel1-like repeat RAM_01420 238ea7d1ed9ba1a94fb72985968e519e 347 SMART SM00671 86 117 240.0 T 13-10-2018 IPR006597 Sel1-like repeat RAM_01420 238ea7d1ed9ba1a94fb72985968e519e 347 Pfam PF08238 Sel1 repeat 246 277 0.0013 T 13-10-2018 IPR006597 Sel1-like repeat RAM_01420 238ea7d1ed9ba1a94fb72985968e519e 347 Pfam PF08238 Sel1 repeat 293 308 1.2 T 13-10-2018 IPR006597 Sel1-like repeat RAM_25720 cfd86ef1dcdcda50485b352490ec3cdc 304 Pfam PF13276 HTH-like domain 59 113 3.8E-14 T 13-10-2018 IPR025948 HTH-like domain RAM_25720 cfd86ef1dcdcda50485b352490ec3cdc 304 SUPERFAMILY SSF53098 136 295 5.77E-33 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily RAM_25720 cfd86ef1dcdcda50485b352490ec3cdc 304 Pfam PF00665 Integrase core domain 144 255 1.2E-22 T 13-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RAM_25720 cfd86ef1dcdcda50485b352490ec3cdc 304 Gene3D G3DSA:3.30.420.10 137 303 3.6E-7 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RAM_44075 7d22d340a707b3adaae60ee7f94e9b05 271 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 9 181 3.7E-25 T 13-10-2018 IPR013830 SGNH hydrolase-type esterase domain RAM_44075 7d22d340a707b3adaae60ee7f94e9b05 271 SUPERFAMILY SSF52266 6 190 4.5E-34 T 13-10-2018 RAM_44075 7d22d340a707b3adaae60ee7f94e9b05 271 Gene3D G3DSA:3.40.50.1110 6 191 5.6E-26 T 13-10-2018 IPR036514 SGNH hydrolase superfamily RAM_23635 624737d78da75417bb70801fc61f632c 125 Gene3D G3DSA:3.10.450.50 4 115 3.1E-25 T 13-10-2018 RAM_23635 624737d78da75417bb70801fc61f632c 125 Pfam PF14534 Domain of unknown function (DUF4440) 7 106 1.7E-18 T 13-10-2018 IPR027843 Domain of unknown function DUF4440 RAM_23635 624737d78da75417bb70801fc61f632c 125 SUPERFAMILY SSF54427 7 114 2.24E-21 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_10955 5086e456201b3a043523c248775b3c52 303 Pfam PF06089 L-asparaginase II 7 293 7.2E-101 T 13-10-2018 IPR010349 L-asparaginase II RAM_19750 b30974513c6a978ae98f3ac9768d01d0 251 Gene3D G3DSA:1.10.10.10 13 81 8.2E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_19750 b30974513c6a978ae98f3ac9768d01d0 251 Pfam PF07729 FCD domain 105 232 4.4E-21 T 13-10-2018 IPR011711 GntR, C-terminal RAM_19750 b30974513c6a978ae98f3ac9768d01d0 251 SUPERFAMILY SSF48008 102 238 2.17E-23 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_19750 b30974513c6a978ae98f3ac9768d01d0 251 SMART SM00895 105 233 7.2E-21 T 13-10-2018 IPR011711 GntR, C-terminal RAM_19750 b30974513c6a978ae98f3ac9768d01d0 251 SMART SM00345 19 80 1.1E-17 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_19750 b30974513c6a978ae98f3ac9768d01d0 251 SUPERFAMILY SSF46785 17 84 1.67E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_19750 b30974513c6a978ae98f3ac9768d01d0 251 Gene3D G3DSA:1.20.120.530 88 240 1.7E-26 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_19750 b30974513c6a978ae98f3ac9768d01d0 251 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 52 68 1.4E-8 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_19750 b30974513c6a978ae98f3ac9768d01d0 251 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 38 52 1.4E-8 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_19750 b30974513c6a978ae98f3ac9768d01d0 251 Pfam PF00392 Bacterial regulatory proteins, gntR family 17 74 1.5E-18 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_47220 9828555e3022bf1252e0f8b310b265aa 257 Gene3D G3DSA:3.40.50.300 3 257 3.9E-78 T 13-10-2018 RAM_47220 9828555e3022bf1252e0f8b310b265aa 257 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_47220 9828555e3022bf1252e0f8b310b265aa 257 SUPERFAMILY SSF52540 5 248 2.92E-79 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_47220 9828555e3022bf1252e0f8b310b265aa 257 SMART SM00382 29 226 6.7E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_47220 9828555e3022bf1252e0f8b310b265aa 257 Pfam PF00005 ABC transporter 20 178 1.1E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_47220 9828555e3022bf1252e0f8b310b265aa 257 PIRSF PIRSF039085 1 254 2.2E-124 T 13-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 RAM_31355 59ef02ff28a4f9a391ea16099aab7e89 718 Gene3D G3DSA:3.40.50.300 296 436 9.7E-53 T 13-10-2018 RAM_31355 59ef02ff28a4f9a391ea16099aab7e89 718 Gene3D G3DSA:3.40.50.300 20 264 5.7E-73 T 13-10-2018 RAM_31355 59ef02ff28a4f9a391ea16099aab7e89 718 Pfam PF02151 UvrB/uvrC motif 675 708 4.3E-8 T 13-10-2018 IPR001943 UVR domain GO:0005515 RAM_31355 59ef02ff28a4f9a391ea16099aab7e89 718 SMART SM00490 482 568 2.6E-18 T 13-10-2018 IPR001650 Helicase, C-terminal RAM_31355 59ef02ff28a4f9a391ea16099aab7e89 718 Pfam PF12344 Ultra-violet resistance protein B 574 615 9.0E-21 T 13-10-2018 IPR024759 UvrB, YAD/RRR-motif-containing domain RAM_31355 59ef02ff28a4f9a391ea16099aab7e89 718 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 27 706 0.0 T 13-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 RAM_31355 59ef02ff28a4f9a391ea16099aab7e89 718 SUPERFAMILY SSF46600 662 710 1.57E-11 T 13-10-2018 IPR036876 UVR domain superfamily RAM_31355 59ef02ff28a4f9a391ea16099aab7e89 718 Gene3D G3DSA:4.10.860.10 658 710 2.0E-8 T 13-10-2018 RAM_31355 59ef02ff28a4f9a391ea16099aab7e89 718 Hamap MF_00204 UvrABC system protein B [uvrB]. 26 708 42.877 T 13-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 RAM_31355 59ef02ff28a4f9a391ea16099aab7e89 718 Pfam PF00271 Helicase conserved C-terminal domain 456 566 7.6E-18 T 13-10-2018 IPR001650 Helicase, C-terminal RAM_31355 59ef02ff28a4f9a391ea16099aab7e89 718 SMART SM00487 32 447 1.6E-26 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RAM_31355 59ef02ff28a4f9a391ea16099aab7e89 718 Gene3D G3DSA:3.40.50.300 437 618 2.9E-48 T 13-10-2018 RAM_31355 59ef02ff28a4f9a391ea16099aab7e89 718 SUPERFAMILY SSF52540 55 615 4.48E-35 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_31355 59ef02ff28a4f9a391ea16099aab7e89 718 SUPERFAMILY SSF52540 28 437 7.71E-132 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_31355 59ef02ff28a4f9a391ea16099aab7e89 718 Pfam PF04851 Type III restriction enzyme, res subunit 39 160 4.9E-9 T 13-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 RAM_21255 356acc26dceb6f6d59a7ce828f280027 468 SMART SM00345 17 76 2.5E-18 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_21255 356acc26dceb6f6d59a7ce828f280027 468 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 36 50 3.4E-6 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_21255 356acc26dceb6f6d59a7ce828f280027 468 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 50 66 3.4E-6 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_21255 356acc26dceb6f6d59a7ce828f280027 468 SUPERFAMILY SSF46785 9 78 2.06E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_21255 356acc26dceb6f6d59a7ce828f280027 468 SUPERFAMILY SSF53383 100 467 1.24E-88 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_21255 356acc26dceb6f6d59a7ce828f280027 468 Gene3D G3DSA:1.10.10.10 11 79 1.6E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_21255 356acc26dceb6f6d59a7ce828f280027 468 Pfam PF00155 Aminotransferase class I and II 128 407 6.0E-22 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RAM_21255 356acc26dceb6f6d59a7ce828f280027 468 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 76 2.0E-17 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_21255 356acc26dceb6f6d59a7ce828f280027 468 Gene3D G3DSA:3.40.640.10 107 461 2.4E-113 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_10225 2cc8ebcf37e3be08ceddc700a54b99c6 328 Gene3D G3DSA:3.40.50.720 130 269 1.2E-90 T 13-10-2018 RAM_10225 2cc8ebcf37e3be08ceddc700a54b99c6 328 SUPERFAMILY SSF51735 119 295 1.36E-36 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_10225 2cc8ebcf37e3be08ceddc700a54b99c6 328 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 95 7.6E-6 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_10225 2cc8ebcf37e3be08ceddc700a54b99c6 328 Pfam PF13602 Zinc-binding dehydrogenase 189 318 6.0E-25 T 13-10-2018 RAM_10225 2cc8ebcf37e3be08ceddc700a54b99c6 328 Gene3D G3DSA:3.90.180.10 8 317 1.2E-90 T 13-10-2018 RAM_10225 2cc8ebcf37e3be08ceddc700a54b99c6 328 SUPERFAMILY SSF50129 2 147 8.52E-32 T 13-10-2018 IPR011032 GroES-like superfamily RAM_10225 2cc8ebcf37e3be08ceddc700a54b99c6 328 SMART SM00829 10 318 3.5E-22 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_07495 f27adc17cf74bf1b07a2acf528326240 535 SMART SM00327 342 528 0.0064 T 13-10-2018 IPR002035 von Willebrand factor, type A RAM_07495 f27adc17cf74bf1b07a2acf528326240 535 Gene3D G3DSA:3.40.50.410 344 532 1.8E-26 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RAM_07495 f27adc17cf74bf1b07a2acf528326240 535 Gene3D G3DSA:3.40.190.10 4 117 4.1E-7 T 13-10-2018 RAM_07495 f27adc17cf74bf1b07a2acf528326240 535 Pfam PF13531 Bacterial extracellular solute-binding protein 36 294 4.7E-21 T 13-10-2018 RAM_07495 f27adc17cf74bf1b07a2acf528326240 535 SUPERFAMILY SSF53300 346 523 1.91E-16 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RAM_07495 f27adc17cf74bf1b07a2acf528326240 535 SUPERFAMILY SSF53850 32 314 5.64E-19 T 13-10-2018 RAM_07495 f27adc17cf74bf1b07a2acf528326240 535 Pfam PF00092 von Willebrand factor type A domain 348 525 1.4E-6 T 13-10-2018 IPR002035 von Willebrand factor, type A RAM_01955 1c91551f285038e52748617daaf6df53 263 PRINTS PR01543 Arylamine N-acetyltransferase signature 53 76 2.0E-6 T 13-10-2018 IPR001447 Arylamine N-acetyltransferase GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 RAM_01955 1c91551f285038e52748617daaf6df53 263 PRINTS PR01543 Arylamine N-acetyltransferase signature 29 52 2.0E-6 T 13-10-2018 IPR001447 Arylamine N-acetyltransferase GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 RAM_01955 1c91551f285038e52748617daaf6df53 263 PRINTS PR01543 Arylamine N-acetyltransferase signature 77 99 2.0E-6 T 13-10-2018 IPR001447 Arylamine N-acetyltransferase GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 RAM_01955 1c91551f285038e52748617daaf6df53 263 SUPERFAMILY SSF54001 10 257 7.46E-65 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily RAM_01955 1c91551f285038e52748617daaf6df53 263 Gene3D G3DSA:3.30.2140.10 14 250 1.0E-78 T 13-10-2018 RAM_01955 1c91551f285038e52748617daaf6df53 263 Pfam PF00797 N-acetyltransferase 32 253 1.1E-51 T 13-10-2018 IPR001447 Arylamine N-acetyltransferase GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 RAM_01955 1c91551f285038e52748617daaf6df53 263 Gene3D G3DSA:2.40.128.150 93 180 1.0E-78 T 13-10-2018 RAM_34410 5a23d02921195afc12132a0e929fef27 497 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 181 192 - T 13-10-2018 IPR023827 Peptidase S8, subtilisin, Asp-active site RAM_34410 5a23d02921195afc12132a0e929fef27 497 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 409 419 - T 13-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site RAM_34410 5a23d02921195afc12132a0e929fef27 497 Gene3D G3DSA:3.40.50.200 133 488 5.2E-70 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RAM_34410 5a23d02921195afc12132a0e929fef27 497 Pfam PF00082 Subtilase family 177 447 1.5E-38 T 13-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RAM_34410 5a23d02921195afc12132a0e929fef27 497 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 226 236 - T 13-10-2018 IPR022398 Peptidase S8, subtilisin, His-active site RAM_34410 5a23d02921195afc12132a0e929fef27 497 PRINTS PR00723 Subtilisin serine protease family (S8) signature 222 235 4.2E-18 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related RAM_34410 5a23d02921195afc12132a0e929fef27 497 PRINTS PR00723 Subtilisin serine protease family (S8) signature 176 195 4.2E-18 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related RAM_34410 5a23d02921195afc12132a0e929fef27 497 PRINTS PR00723 Subtilisin serine protease family (S8) signature 408 424 4.2E-18 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related RAM_34410 5a23d02921195afc12132a0e929fef27 497 SUPERFAMILY SSF52743 158 484 4.58E-62 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RAM_43345 f497a7aa359ba091d40015e59da86240 236 Pfam PF00440 Bacterial regulatory proteins, tetR family 21 65 9.9E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_43345 f497a7aa359ba091d40015e59da86240 236 Gene3D G3DSA:1.10.357.10 63 203 9.5E-14 T 13-10-2018 RAM_43345 f497a7aa359ba091d40015e59da86240 236 SUPERFAMILY SSF48498 90 203 1.34E-10 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_43345 f497a7aa359ba091d40015e59da86240 236 SUPERFAMILY SSF46689 11 85 1.9E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_43345 f497a7aa359ba091d40015e59da86240 236 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 42 65 9.0E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_43345 f497a7aa359ba091d40015e59da86240 236 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 21 34 9.0E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_43345 f497a7aa359ba091d40015e59da86240 236 Gene3D G3DSA:1.10.10.60 2 62 4.7E-15 T 13-10-2018 RAM_26460 d4e4159a7a1b83e6f70720dcb96b60e4 322 SUPERFAMILY SSF53822 62 321 6.16E-54 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_26460 d4e4159a7a1b83e6f70720dcb96b60e4 322 Gene3D G3DSA:1.10.260.40 1 46 8.7E-16 T 13-10-2018 RAM_26460 d4e4159a7a1b83e6f70720dcb96b60e4 322 Pfam PF13377 Periplasmic binding protein-like domain 161 322 4.3E-35 T 13-10-2018 RAM_26460 d4e4159a7a1b83e6f70720dcb96b60e4 322 SUPERFAMILY SSF47413 1 47 7.03E-12 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_26460 d4e4159a7a1b83e6f70720dcb96b60e4 322 Gene3D G3DSA:3.40.50.2300 153 282 2.0E-64 T 13-10-2018 RAM_26460 d4e4159a7a1b83e6f70720dcb96b60e4 322 SMART SM00354 1 59 3.3E-13 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_26460 d4e4159a7a1b83e6f70720dcb96b60e4 322 Pfam PF00356 Bacterial regulatory proteins, lacI family 1 36 1.7E-11 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_26460 d4e4159a7a1b83e6f70720dcb96b60e4 322 Gene3D G3DSA:3.40.50.2300 76 304 2.0E-64 T 13-10-2018 RAM_21455 dc22fa38a2484b56040cc18dd71ec69c 313 Gene3D G3DSA:3.50.50.60 115 223 2.2E-85 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_21455 dc22fa38a2484b56040cc18dd71ec69c 313 Gene3D G3DSA:3.50.50.60 8 280 2.2E-85 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_21455 dc22fa38a2484b56040cc18dd71ec69c 313 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 218 234 1.2E-15 T 13-10-2018 RAM_21455 dc22fa38a2484b56040cc18dd71ec69c 313 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 101 119 1.2E-15 T 13-10-2018 RAM_21455 dc22fa38a2484b56040cc18dd71ec69c 313 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 1.2E-15 T 13-10-2018 RAM_21455 dc22fa38a2484b56040cc18dd71ec69c 313 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 143 161 1.2E-15 T 13-10-2018 RAM_21455 dc22fa38a2484b56040cc18dd71ec69c 313 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 240 262 1.2E-15 T 13-10-2018 RAM_21455 dc22fa38a2484b56040cc18dd71ec69c 313 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 102 110 8.6E-19 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAM_21455 dc22fa38a2484b56040cc18dd71ec69c 313 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 139 163 8.6E-19 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAM_21455 dc22fa38a2484b56040cc18dd71ec69c 313 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 220 241 8.6E-19 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAM_21455 dc22fa38a2484b56040cc18dd71ec69c 313 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 267 286 8.6E-19 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAM_21455 dc22fa38a2484b56040cc18dd71ec69c 313 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 124 136 8.6E-19 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAM_21455 dc22fa38a2484b56040cc18dd71ec69c 313 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 8 30 8.6E-19 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAM_21455 dc22fa38a2484b56040cc18dd71ec69c 313 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 275 1.5E-21 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAM_21455 dc22fa38a2484b56040cc18dd71ec69c 313 SUPERFAMILY SSF51905 1 290 9.18E-36 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_47985 8eb09193c67a8046defdb86f2cd735af 314 Gene3D G3DSA:3.30.470.20 86 307 6.9E-55 T 13-10-2018 RAM_47985 8eb09193c67a8046defdb86f2cd735af 314 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 254 282 - T 13-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RAM_47985 8eb09193c67a8046defdb86f2cd735af 314 SUPERFAMILY SSF56059 97 303 1.27E-43 T 13-10-2018 RAM_47985 8eb09193c67a8046defdb86f2cd735af 314 SUPERFAMILY SSF52440 5 97 6.91E-22 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RAM_47985 8eb09193c67a8046defdb86f2cd735af 314 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 4 312 28.078 T 13-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RAM_47985 8eb09193c67a8046defdb86f2cd735af 314 Gene3D G3DSA:3.30.1490.20 112 185 6.9E-55 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 RAM_47985 8eb09193c67a8046defdb86f2cd735af 314 PIRSF PIRSF039102 40 314 2.2E-65 T 13-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RAM_47985 8eb09193c67a8046defdb86f2cd735af 314 PIRSF PIRSF039102 2 46 9.8E-7 T 13-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RAM_47985 8eb09193c67a8046defdb86f2cd735af 314 Pfam PF01820 D-ala D-ala ligase N-terminus 6 86 1.3E-14 T 13-10-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RAM_47985 8eb09193c67a8046defdb86f2cd735af 314 Pfam PF07478 D-ala D-ala ligase C-terminus 104 308 2.9E-42 T 13-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RAM_47985 8eb09193c67a8046defdb86f2cd735af 314 Gene3D G3DSA:3.40.50.20 2 85 3.9E-22 T 13-10-2018 RAM_16740 10969afdc54fccf6eac410f4d1d5ad2d 657 SMART SM00812 37 449 1.1E-122 T 13-10-2018 IPR000933 Glycoside hydrolase, family 29 GO:0004560|GO:0005975 KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 RAM_16740 10969afdc54fccf6eac410f4d1d5ad2d 657 SUPERFAMILY SSF50370 518 655 9.78E-31 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_16740 10969afdc54fccf6eac410f4d1d5ad2d 657 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 602 655 1.6E-9 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_16740 10969afdc54fccf6eac410f4d1d5ad2d 657 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 520 595 1.0E-12 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_16740 10969afdc54fccf6eac410f4d1d5ad2d 657 Gene3D G3DSA:3.20.20.80 33 390 2.3E-127 T 13-10-2018 RAM_16740 10969afdc54fccf6eac410f4d1d5ad2d 657 PRINTS PR00741 Glycosyl hydrolase family 29 signature 244 260 1.7E-11 T 13-10-2018 IPR016286 Alpha-L-fucosidase, metazoa-type GO:0004560|GO:0006004 KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 RAM_16740 10969afdc54fccf6eac410f4d1d5ad2d 657 PRINTS PR00741 Glycosyl hydrolase family 29 signature 340 361 1.7E-11 T 13-10-2018 IPR016286 Alpha-L-fucosidase, metazoa-type GO:0004560|GO:0006004 KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 RAM_16740 10969afdc54fccf6eac410f4d1d5ad2d 657 PRINTS PR00741 Glycosyl hydrolase family 29 signature 373 395 1.7E-11 T 13-10-2018 IPR016286 Alpha-L-fucosidase, metazoa-type GO:0004560|GO:0006004 KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 RAM_16740 10969afdc54fccf6eac410f4d1d5ad2d 657 PRINTS PR00741 Glycosyl hydrolase family 29 signature 150 166 1.7E-11 T 13-10-2018 IPR016286 Alpha-L-fucosidase, metazoa-type GO:0004560|GO:0006004 KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 RAM_16740 10969afdc54fccf6eac410f4d1d5ad2d 657 SUPERFAMILY SSF51445 38 390 2.0E-76 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_16740 10969afdc54fccf6eac410f4d1d5ad2d 657 Pfam PF01120 Alpha-L-fucosidase 35 387 9.8E-85 T 13-10-2018 IPR000933 Glycoside hydrolase, family 29 GO:0004560|GO:0005975 KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 RAM_16740 10969afdc54fccf6eac410f4d1d5ad2d 657 Gene3D G3DSA:2.80.10.50 524 656 8.7E-29 T 13-10-2018 RAM_16740 10969afdc54fccf6eac410f4d1d5ad2d 657 Gene3D G3DSA:2.60.40.1180 391 512 2.2E-24 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta RAM_34910 cd8d47ba925463e655c41c56682d55c8 121 Pfam PF01638 HxlR-like helix-turn-helix 19 103 1.2E-25 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type RAM_34910 cd8d47ba925463e655c41c56682d55c8 121 Gene3D G3DSA:1.10.10.10 2 118 2.0E-36 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_34910 cd8d47ba925463e655c41c56682d55c8 121 SUPERFAMILY SSF46785 6 103 2.08E-29 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_47880 3ee971f91dff02f615bfcd1342e60e33 1455 SUPERFAMILY SSF81301 1263 1404 4.74E-15 T 13-10-2018 RAM_47880 3ee971f91dff02f615bfcd1342e60e33 1455 Pfam PF04607 Region found in RelA / SpoT proteins 1319 1402 3.2E-6 T 13-10-2018 IPR007685 RelA/SpoT GO:0015969 RAM_47880 3ee971f91dff02f615bfcd1342e60e33 1455 SUPERFAMILY SSF56399 687 847 3.5E-7 T 13-10-2018 RAM_47880 3ee971f91dff02f615bfcd1342e60e33 1455 Gene3D G3DSA:3.30.460.10 1302 1392 5.8E-6 T 13-10-2018 RAM_47880 3ee971f91dff02f615bfcd1342e60e33 1455 SMART SM00954 1300 1407 0.0052 T 13-10-2018 IPR007685 RelA/SpoT GO:0015969 RAM_47880 3ee971f91dff02f615bfcd1342e60e33 1455 SUPERFAMILY SSF56399 176 338 2.93E-14 T 13-10-2018 RAM_47880 3ee971f91dff02f615bfcd1342e60e33 1455 Gene3D G3DSA:3.90.176.10 614 833 2.3E-32 T 13-10-2018 RAM_47880 3ee971f91dff02f615bfcd1342e60e33 1455 Gene3D G3DSA:3.90.176.10 148 345 1.1E-41 T 13-10-2018 RAM_47880 3ee971f91dff02f615bfcd1342e60e33 1455 Pfam PF15644 Papain fold toxin 1, glutamine deamidase 983 1085 3.3E-19 T 13-10-2018 IPR028908 Tox-PL domain RAM_47880 3ee971f91dff02f615bfcd1342e60e33 1455 Pfam PF15644 Papain fold toxin 1, glutamine deamidase 503 592 4.1E-6 T 13-10-2018 IPR028908 Tox-PL domain RAM_47880 3ee971f91dff02f615bfcd1342e60e33 1455 Pfam PF01129 NAD:arginine ADP-ribosyltransferase 166 336 4.4E-7 T 13-10-2018 IPR000768 NAD:arginine ADP-ribosyltransferase, ART GO:0003956|GO:0006471 RAM_07235 f505d5c9690cee9a2327afd7efaee81d 316 SUPERFAMILY SSF51735 120 289 6.51E-31 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_07235 f505d5c9690cee9a2327afd7efaee81d 316 SMART SM00829 10 312 8.2E-24 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_07235 f505d5c9690cee9a2327afd7efaee81d 316 SUPERFAMILY SSF50129 1 145 2.43E-33 T 13-10-2018 IPR011032 GroES-like superfamily RAM_07235 f505d5c9690cee9a2327afd7efaee81d 316 Gene3D G3DSA:3.40.50.720 131 263 1.7E-79 T 13-10-2018 RAM_07235 f505d5c9690cee9a2327afd7efaee81d 316 Gene3D G3DSA:3.90.180.10 18 311 1.7E-79 T 13-10-2018 RAM_07235 f505d5c9690cee9a2327afd7efaee81d 316 Pfam PF13602 Zinc-binding dehydrogenase 190 312 2.2E-22 T 13-10-2018 RAM_07235 f505d5c9690cee9a2327afd7efaee81d 316 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 89 1.0E-7 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_15985 7b1c9e33656197da8fb5906963fa6bc4 385 SMART SM00922 134 247 9.0E-24 T 13-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal RAM_15985 7b1c9e33656197da8fb5906963fa6bc4 385 Gene3D G3DSA:3.30.390.10 19 370 8.5E-127 T 13-10-2018 IPR029017 Enolase-like, N-terminal RAM_15985 7b1c9e33656197da8fb5906963fa6bc4 385 SUPERFAMILY SSF51604 99 378 4.72E-80 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RAM_15985 7b1c9e33656197da8fb5906963fa6bc4 385 ProSitePatterns PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1. 86 111 - T 13-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 RAM_15985 7b1c9e33656197da8fb5906963fa6bc4 385 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 17 111 1.3E-17 T 13-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain RAM_15985 7b1c9e33656197da8fb5906963fa6bc4 385 SUPERFAMILY SSF54826 1 116 3.7E-28 T 13-10-2018 RAM_15985 7b1c9e33656197da8fb5906963fa6bc4 385 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 197 228 - T 13-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 RAM_15985 7b1c9e33656197da8fb5906963fa6bc4 385 Pfam PF13378 Enolase C-terminal domain-like 138 370 8.2E-65 T 13-10-2018 IPR029065 Enolase C-terminal domain-like RAM_15985 7b1c9e33656197da8fb5906963fa6bc4 385 Gene3D G3DSA:3.20.20.120 104 361 8.5E-127 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RAM_06405 3e490b499196afe9178aa8fff60638df 412 SUPERFAMILY SSF55073 251 407 2.75E-45 T 13-10-2018 IPR029787 Nucleotide cyclase RAM_06405 3e490b499196afe9178aa8fff60638df 412 Gene3D G3DSA:3.30.70.270 237 407 1.4E-54 T 13-10-2018 RAM_06405 3e490b499196afe9178aa8fff60638df 412 Pfam PF00990 Diguanylate cyclase, GGDEF domain 245 404 8.1E-44 T 13-10-2018 IPR000160 GGDEF domain RAM_06405 3e490b499196afe9178aa8fff60638df 412 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 241 406 1.0E-47 T 13-10-2018 IPR000160 GGDEF domain RAM_06405 3e490b499196afe9178aa8fff60638df 412 SMART SM00267 234 408 4.4E-56 T 13-10-2018 IPR000160 GGDEF domain RAM_36105 9edb9f6baea42fbfcdc18bb3a52132bf 483 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 25 131 1.7E-22 T 13-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 RAM_36105 9edb9f6baea42fbfcdc18bb3a52132bf 483 SUPERFAMILY SSF46548 6 153 1.99E-37 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 RAM_36105 9edb9f6baea42fbfcdc18bb3a52132bf 483 Gene3D G3DSA:3.50.50.60 404 460 2.7E-6 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_36105 9edb9f6baea42fbfcdc18bb3a52132bf 483 TIGRFAM TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit 3 472 4.0E-212 T 13-10-2018 IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 GO:0006537|GO:0016639|GO:0055114 RAM_36105 9edb9f6baea42fbfcdc18bb3a52132bf 483 Gene3D G3DSA:1.10.1060.10 10 141 2.3E-20 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 RAM_36105 9edb9f6baea42fbfcdc18bb3a52132bf 483 PRINTS PR00419 Adrenodoxin reductase family signature 145 167 1.5E-22 T 13-10-2018 RAM_36105 9edb9f6baea42fbfcdc18bb3a52132bf 483 PRINTS PR00419 Adrenodoxin reductase family signature 210 220 1.5E-22 T 13-10-2018 RAM_36105 9edb9f6baea42fbfcdc18bb3a52132bf 483 PRINTS PR00419 Adrenodoxin reductase family signature 284 298 1.5E-22 T 13-10-2018 RAM_36105 9edb9f6baea42fbfcdc18bb3a52132bf 483 PRINTS PR00419 Adrenodoxin reductase family signature 168 181 1.5E-22 T 13-10-2018 RAM_36105 9edb9f6baea42fbfcdc18bb3a52132bf 483 Gene3D G3DSA:3.50.50.60 251 398 7.3E-35 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_36105 9edb9f6baea42fbfcdc18bb3a52132bf 483 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 144 454 1.5E-26 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAM_36105 9edb9f6baea42fbfcdc18bb3a52132bf 483 Gene3D G3DSA:3.40.50.720 142 250 3.0E-15 T 13-10-2018 RAM_36105 9edb9f6baea42fbfcdc18bb3a52132bf 483 SUPERFAMILY SSF51971 142 399 1.24E-66 T 13-10-2018 RAM_47630 17f0f27dd256c05fac64ee326f71a84d 784 SUPERFAMILY SSF56601 264 696 4.88E-64 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_47630 17f0f27dd256c05fac64ee326f71a84d 784 Pfam PF00912 Transglycosylase 119 279 3.4E-48 T 13-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RAM_47630 17f0f27dd256c05fac64ee326f71a84d 784 Gene3D G3DSA:3.40.710.10 310 703 1.3E-85 T 13-10-2018 RAM_47630 17f0f27dd256c05fac64ee326f71a84d 784 SUPERFAMILY SSF53955 98 296 7.59E-56 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily RAM_47630 17f0f27dd256c05fac64ee326f71a84d 784 Gene3D G3DSA:1.10.3810.10 106 294 5.6E-55 T 13-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RAM_47630 17f0f27dd256c05fac64ee326f71a84d 784 Pfam PF00905 Penicillin binding protein transpeptidase domain 371 648 5.5E-20 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RAM_28410 a67887e9e91078dcb25825f4b2a919fc 519 SUPERFAMILY SSF55874 427 517 1.7E-12 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_28410 a67887e9e91078dcb25825f4b2a919fc 519 SUPERFAMILY SSF55781 2 171 1.48E-27 T 13-10-2018 RAM_28410 a67887e9e91078dcb25825f4b2a919fc 519 Pfam PF01590 GAF domain 177 311 9.8E-5 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_28410 a67887e9e91078dcb25825f4b2a919fc 519 Gene3D G3DSA:3.30.450.40 177 328 1.7E-25 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_28410 a67887e9e91078dcb25825f4b2a919fc 519 Gene3D G3DSA:3.30.565.10 396 518 2.5E-29 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_28410 a67887e9e91078dcb25825f4b2a919fc 519 Pfam PF13185 GAF domain 16 147 2.2E-15 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_28410 a67887e9e91078dcb25825f4b2a919fc 519 SMART SM00065 16 156 5.9E-17 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_28410 a67887e9e91078dcb25825f4b2a919fc 519 SMART SM00065 177 321 4.4E-6 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_28410 a67887e9e91078dcb25825f4b2a919fc 519 Gene3D G3DSA:3.30.450.40 12 156 1.0E-41 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_28410 a67887e9e91078dcb25825f4b2a919fc 519 SUPERFAMILY SSF55781 158 339 5.02E-21 T 13-10-2018 RAM_28410 a67887e9e91078dcb25825f4b2a919fc 519 Pfam PF07730 Histidine kinase 329 389 1.7E-9 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_28410 a67887e9e91078dcb25825f4b2a919fc 519 SMART SM00387 431 519 0.0022 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_28410 a67887e9e91078dcb25825f4b2a919fc 519 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 436 483 5.2E-7 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_02000 1426565875ec5d5df03b53ac57acddab 252 Pfam PF09339 IclR helix-turn-helix domain 1 50 2.4E-14 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RAM_02000 1426565875ec5d5df03b53ac57acddab 252 Gene3D G3DSA:3.30.450.40 74 247 6.7E-50 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_02000 1426565875ec5d5df03b53ac57acddab 252 SUPERFAMILY SSF55781 55 238 2.22E-44 T 13-10-2018 RAM_02000 1426565875ec5d5df03b53ac57acddab 252 SMART SM00346 1 87 4.5E-21 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RAM_02000 1426565875ec5d5df03b53ac57acddab 252 Gene3D G3DSA:1.10.10.10 1 58 3.0E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_02000 1426565875ec5d5df03b53ac57acddab 252 Pfam PF01614 Bacterial transcriptional regulator 117 235 1.8E-26 T 13-10-2018 IPR014757 Transcription regulator IclR, C-terminal RAM_02000 1426565875ec5d5df03b53ac57acddab 252 SUPERFAMILY SSF46785 1 68 4.33E-14 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_14095 8d0a292a26ebf43c9e99077f94fe4c44 442 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 227 423 40.347 T 13-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 RAM_14095 8d0a292a26ebf43c9e99077f94fe4c44 442 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 28 221 4.4E-87 T 13-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RAM_14095 8d0a292a26ebf43c9e99077f94fe4c44 442 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 22 226 38.992 T 13-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RAM_14095 8d0a292a26ebf43c9e99077f94fe4c44 442 Pfam PF00925 GTP cyclohydrolase II 230 397 1.6E-68 T 13-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 RAM_14095 8d0a292a26ebf43c9e99077f94fe4c44 442 SUPERFAMILY SSF55821 26 229 1.49E-82 T 13-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily RAM_14095 8d0a292a26ebf43c9e99077f94fe4c44 442 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 26 222 1.3E-75 T 13-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RAM_14095 8d0a292a26ebf43c9e99077f94fe4c44 442 Gene3D G3DSA:3.90.870.10 18 228 3.2E-92 T 13-10-2018 RAM_14095 8d0a292a26ebf43c9e99077f94fe4c44 442 Gene3D G3DSA:3.40.50.10990 229 401 3.9E-72 T 13-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 RAM_14095 8d0a292a26ebf43c9e99077f94fe4c44 442 PIRSF PIRSF001259 22 430 1.2E-177 T 13-10-2018 RAM_14095 8d0a292a26ebf43c9e99077f94fe4c44 442 Hamap MF_01283 Riboflavin biosynthesis protein RibBA [ribBA]. 23 419 55.371 T 13-10-2018 IPR016299 Riboflavin biosynthesis protein RibBA GO:0009231 KEGG: 00740+3.5.4.25+4.1.99.12|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 RAM_14095 8d0a292a26ebf43c9e99077f94fe4c44 442 TIGRFAM TIGR00505 ribA: GTP cyclohydrolase II 230 420 2.5E-70 T 13-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 RAM_14095 8d0a292a26ebf43c9e99077f94fe4c44 442 SUPERFAMILY SSF142695 228 400 3.92E-69 T 13-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 RAM_42460 b3908246230893957a5eb8b490292d23 457 Gene3D G3DSA:3.40.630.10 24 430 6.5E-87 T 13-10-2018 RAM_42460 b3908246230893957a5eb8b490292d23 457 Pfam PF07687 Peptidase dimerisation domain 215 348 1.3E-8 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain RAM_42460 b3908246230893957a5eb8b490292d23 457 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 121 160 - T 13-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 RAM_42460 b3908246230893957a5eb8b490292d23 457 Gene3D G3DSA:3.30.70.360 200 363 6.5E-87 T 13-10-2018 RAM_42460 b3908246230893957a5eb8b490292d23 457 Pfam PF01546 Peptidase family M20/M25/M40 86 440 5.7E-20 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 RAM_42460 b3908246230893957a5eb8b490292d23 457 SUPERFAMILY SSF53187 12 449 2.23E-45 T 13-10-2018 RAM_04105 108b23149b848e73a8805eecaf832dbf 296 Gene3D G3DSA:3.40.50.720 1 129 2.8E-47 T 13-10-2018 RAM_04105 108b23149b848e73a8805eecaf832dbf 296 Hamap MF_01988 Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 1 292 38.967 T 13-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RAM_04105 108b23149b848e73a8805eecaf832dbf 296 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 158 185 - T 13-10-2018 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site RAM_04105 108b23149b848e73a8805eecaf832dbf 296 Pfam PF02629 CoA binding domain 7 103 5.0E-26 T 13-10-2018 IPR003781 CoA-binding GO:0048037 RAM_04105 108b23149b848e73a8805eecaf832dbf 296 PIRSF PIRSF001553 1 295 2.4E-116 T 13-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RAM_04105 108b23149b848e73a8805eecaf832dbf 296 SUPERFAMILY SSF51735 1 128 3.04E-37 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_04105 108b23149b848e73a8805eecaf832dbf 296 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 3 290 3.3E-127 T 13-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RAM_04105 108b23149b848e73a8805eecaf832dbf 296 Pfam PF00549 CoA-ligase 158 275 5.5E-15 T 13-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RAM_04105 108b23149b848e73a8805eecaf832dbf 296 SMART SM00881 4 104 5.3E-31 T 13-10-2018 IPR003781 CoA-binding GO:0048037 RAM_04105 108b23149b848e73a8805eecaf832dbf 296 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 240 253 - T 13-10-2018 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site RAM_04105 108b23149b848e73a8805eecaf832dbf 296 PRINTS PR01798 Succinyl-CoA synthase signature 181 199 1.6E-34 T 13-10-2018 RAM_04105 108b23149b848e73a8805eecaf832dbf 296 PRINTS PR01798 Succinyl-CoA synthase signature 86 103 1.6E-34 T 13-10-2018 RAM_04105 108b23149b848e73a8805eecaf832dbf 296 PRINTS PR01798 Succinyl-CoA synthase signature 212 225 1.6E-34 T 13-10-2018 RAM_04105 108b23149b848e73a8805eecaf832dbf 296 PRINTS PR01798 Succinyl-CoA synthase signature 244 261 1.6E-34 T 13-10-2018 RAM_04105 108b23149b848e73a8805eecaf832dbf 296 SUPERFAMILY SSF52210 129 292 4.97E-47 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RAM_04105 108b23149b848e73a8805eecaf832dbf 296 Gene3D G3DSA:3.40.50.261 130 292 4.2E-61 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RAM_27390 6c447acca849c1808416a79d5425d614 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 3.7E-29 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_27390 6c447acca849c1808416a79d5425d614 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 3.7E-29 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_27390 6c447acca849c1808416a79d5425d614 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 3.7E-29 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_27390 6c447acca849c1808416a79d5425d614 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 14 31 3.7E-29 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_27390 6c447acca849c1808416a79d5425d614 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 3.7E-29 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_27390 6c447acca849c1808416a79d5425d614 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 3.7E-29 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_27390 6c447acca849c1808416a79d5425d614 253 Gene3D G3DSA:3.40.50.720 2 253 4.1E-67 T 13-10-2018 RAM_27390 6c447acca849c1808416a79d5425d614 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 5.0E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_27390 6c447acca849c1808416a79d5425d614 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 5.0E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_27390 6c447acca849c1808416a79d5425d614 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 5.0E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_27390 6c447acca849c1808416a79d5425d614 253 Pfam PF00106 short chain dehydrogenase 14 200 7.9E-48 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_27390 6c447acca849c1808416a79d5425d614 253 SUPERFAMILY SSF51735 8 252 1.52E-63 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_27390 6c447acca849c1808416a79d5425d614 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_14170 45f55380f5925860a72970a9e89319e1 277 SUPERFAMILY SSF102886 5 269 4.05E-78 T 13-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 RAM_14170 45f55380f5925860a72970a9e89319e1 277 Pfam PF01218 Coproporphyrinogen III oxidase 60 268 6.0E-74 T 13-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 RAM_14170 45f55380f5925860a72970a9e89319e1 277 Gene3D G3DSA:3.40.1500.10 2 269 3.6E-77 T 13-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 RAM_14170 45f55380f5925860a72970a9e89319e1 277 PRINTS PR00073 Coprogen oxidase signature 40 61 1.1E-7 T 13-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 RAM_14170 45f55380f5925860a72970a9e89319e1 277 PRINTS PR00073 Coprogen oxidase signature 206 233 1.1E-7 T 13-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 RAM_08505 6151ddc03b0168ed500ffa73f36c0cfa 498 TIGRFAM TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit 14 495 3.2E-146 T 13-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 RAM_08505 6151ddc03b0168ed500ffa73f36c0cfa 498 ProSitePatterns PS01234 Glutamyl-tRNA(Gln) amidotransferase subunit B signature. 162 176 - T 13-10-2018 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO:0016884 RAM_08505 6151ddc03b0168ed500ffa73f36c0cfa 498 Pfam PF02934 GatB/GatE catalytic domain 17 311 7.1E-106 T 13-10-2018 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic GO:0016874 RAM_08505 6151ddc03b0168ed500ffa73f36c0cfa 498 Pfam PF02637 GatB domain 349 495 1.7E-39 T 13-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 RAM_08505 6151ddc03b0168ed500ffa73f36c0cfa 498 Hamap MF_00121 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [gatB]. 13 497 35.953 T 13-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 RAM_08505 6151ddc03b0168ed500ffa73f36c0cfa 498 SUPERFAMILY SSF89095 349 495 1.14E-26 T 13-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 RAM_08505 6151ddc03b0168ed500ffa73f36c0cfa 498 SUPERFAMILY SSF55931 16 318 5.76E-113 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 RAM_08505 6151ddc03b0168ed500ffa73f36c0cfa 498 Gene3D G3DSA:1.10.10.410 436 497 1.4E-15 T 13-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal RAM_08505 6151ddc03b0168ed500ffa73f36c0cfa 498 Gene3D G3DSA:1.10.150.380 319 434 1.1E-19 T 13-10-2018 RAM_08505 6151ddc03b0168ed500ffa73f36c0cfa 498 SMART SM00845 349 496 7.3E-56 T 13-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 RAM_07880 5923a6cebe2ed572fa2d19eabad0e62d 491 ProSitePatterns PS01095 Chitinases family 18 active site. 311 319 - T 13-10-2018 IPR001579 Glycoside hydrolase, chitinase active site GO:0004553|GO:0005975 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 RAM_07880 5923a6cebe2ed572fa2d19eabad0e62d 491 SUPERFAMILY SSF51445 197 479 8.17E-56 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_07880 5923a6cebe2ed572fa2d19eabad0e62d 491 Gene3D G3DSA:3.20.20.80 198 490 3.7E-80 T 13-10-2018 RAM_07880 5923a6cebe2ed572fa2d19eabad0e62d 491 SMART SM00636 200 472 2.8E-6 T 13-10-2018 IPR011583 Chitinase II GO:0008061 RAM_07880 5923a6cebe2ed572fa2d19eabad0e62d 491 Pfam PF00704 Glycosyl hydrolases family 18 202 433 3.9E-26 T 13-10-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 RAM_07880 5923a6cebe2ed572fa2d19eabad0e62d 491 Gene3D G3DSA:2.60.120.260 28 159 1.9E-23 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_07880 5923a6cebe2ed572fa2d19eabad0e62d 491 Pfam PF02018 Carbohydrate binding domain 33 144 2.2E-11 T 13-10-2018 IPR003305 Carbohydrate-binding, CenC-like GO:0016798 RAM_07880 5923a6cebe2ed572fa2d19eabad0e62d 491 SUPERFAMILY SSF49785 33 161 5.74E-8 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_11745 f27945756c411fc36bc8669a43a53fba 502 SUPERFAMILY SSF51971 399 479 7.53E-10 T 13-10-2018 RAM_11745 f27945756c411fc36bc8669a43a53fba 502 TIGRFAM TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit 3 489 1.6E-184 T 13-10-2018 IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 GO:0006537|GO:0016639|GO:0055114 RAM_11745 f27945756c411fc36bc8669a43a53fba 502 SUPERFAMILY SSF51971 153 416 7.46E-65 T 13-10-2018 RAM_11745 f27945756c411fc36bc8669a43a53fba 502 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 155 471 4.9E-26 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAM_11745 f27945756c411fc36bc8669a43a53fba 502 Gene3D G3DSA:3.50.50.60 287 483 3.7E-14 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_11745 f27945756c411fc36bc8669a43a53fba 502 Gene3D G3DSA:1.10.1060.10 8 152 4.3E-19 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 RAM_11745 f27945756c411fc36bc8669a43a53fba 502 PRINTS PR00419 Adrenodoxin reductase family signature 178 191 2.6E-22 T 13-10-2018 RAM_11745 f27945756c411fc36bc8669a43a53fba 502 PRINTS PR00419 Adrenodoxin reductase family signature 294 308 2.6E-22 T 13-10-2018 RAM_11745 f27945756c411fc36bc8669a43a53fba 502 PRINTS PR00419 Adrenodoxin reductase family signature 155 177 2.6E-22 T 13-10-2018 RAM_11745 f27945756c411fc36bc8669a43a53fba 502 PRINTS PR00419 Adrenodoxin reductase family signature 220 230 2.6E-22 T 13-10-2018 RAM_11745 f27945756c411fc36bc8669a43a53fba 502 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 34 140 2.0E-19 T 13-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 RAM_11745 f27945756c411fc36bc8669a43a53fba 502 SUPERFAMILY SSF46548 5 164 1.26E-30 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 RAM_11745 f27945756c411fc36bc8669a43a53fba 502 Gene3D G3DSA:3.50.50.60 153 279 1.2E-34 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_00115 5a4d2b6578e1bfa9cc985d11af037f9f 393 Pfam PF09995 Uncharacterized protein conserved in bacteria (DUF2236) 100 327 2.5E-29 T 13-10-2018 IPR018713 Domain of unknown function DUF2236 RAM_31130 7f494d6751aff2f1497a6e4f51038645 222 PIRSF PIRSF006171 1 222 2.3E-70 T 13-10-2018 IPR024187 Signal transduction response regulator, citrate/malate metabolism GO:0000160|GO:0003700 RAM_31130 7f494d6751aff2f1497a6e4f51038645 222 Pfam PF00072 Response regulator receiver domain 4 115 8.9E-22 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_31130 7f494d6751aff2f1497a6e4f51038645 222 Gene3D G3DSA:3.40.50.2300 1 139 2.0E-28 T 13-10-2018 RAM_31130 7f494d6751aff2f1497a6e4f51038645 222 SMART SM00448 2 115 1.0E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_31130 7f494d6751aff2f1497a6e4f51038645 222 SUPERFAMILY SSF52172 2 154 1.99E-32 T 13-10-2018 IPR011006 CheY-like superfamily RAM_00015 f921ec158dd971140522157342f77b51 295 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 2 143 7.0E-36 T 13-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 RAM_00015 f921ec158dd971140522157342f77b51 295 SUPERFAMILY SSF51735 2 144 4.8E-43 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_00015 f921ec158dd971140522157342f77b51 295 Gene3D G3DSA:3.40.50.720 1 161 7.6E-43 T 13-10-2018 RAM_00015 f921ec158dd971140522157342f77b51 295 TIGRFAM TIGR00872 gnd_rel: 6-phosphogluconate dehydrogenase (decarboxylating) 2 292 8.4E-107 T 13-10-2018 IPR004849 6-phosphogluconate dehydrogenase, YqeC-type GO:0055114 RAM_00015 f921ec158dd971140522157342f77b51 295 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 50 79 3.0E-32 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 RAM_00015 f921ec158dd971140522157342f77b51 295 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 1 15 3.0E-32 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 RAM_00015 f921ec158dd971140522157342f77b51 295 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 103 128 3.0E-32 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 RAM_00015 f921ec158dd971140522157342f77b51 295 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 151 179 3.0E-32 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 RAM_00015 f921ec158dd971140522157342f77b51 295 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 226 253 3.0E-32 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 RAM_00015 f921ec158dd971140522157342f77b51 295 SUPERFAMILY SSF48179 160 293 2.31E-39 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RAM_00015 f921ec158dd971140522157342f77b51 295 Gene3D G3DSA:1.10.1040.10 162 292 9.0E-48 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RAM_00015 f921ec158dd971140522157342f77b51 295 ProSitePatterns PS00461 6-phosphogluconate dehydrogenase signature. 230 242 - T 13-10-2018 IPR006184 6-phosphogluconate-binding site GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 RAM_00015 f921ec158dd971140522157342f77b51 295 Pfam PF00393 6-phosphogluconate dehydrogenase, C-terminal domain 162 272 8.5E-23 T 13-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 RAM_00015 f921ec158dd971140522157342f77b51 295 SMART SM01350 162 295 1.3E-4 T 13-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 RAM_10360 7430c51d2654b9bda7b615fb14bc096a 273 SUPERFAMILY SSF46689 209 257 6.27E-7 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_10360 7430c51d2654b9bda7b615fb14bc096a 273 Pfam PF12833 Helix-turn-helix domain 179 255 2.1E-18 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_10360 7430c51d2654b9bda7b615fb14bc096a 273 Gene3D G3DSA:1.10.10.60 165 259 8.0E-23 T 13-10-2018 RAM_10360 7430c51d2654b9bda7b615fb14bc096a 273 SMART SM00342 173 256 7.7E-16 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_06450 68addb5cad6ec202383116f3b26a6881 287 Gene3D G3DSA:3.40.50.1820 27 285 1.5E-62 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_06450 68addb5cad6ec202383116f3b26a6881 287 SUPERFAMILY SSF53474 44 232 1.74E-21 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_06450 68addb5cad6ec202383116f3b26a6881 287 Pfam PF01674 Lipase (class 2) 50 230 3.6E-15 T 13-10-2018 IPR002918 Lipase EstA/Esterase EstB GO:0016787 KEGG: 00561+3.1.1.3|MetaCyc: PWY-6857 RAM_15405 de5bb839bbc462cf0418f4c863a2f19c 79 SUPERFAMILY SSF52540 11 61 8.6E-21 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_15405 de5bb839bbc462cf0418f4c863a2f19c 79 Gene3D G3DSA:3.40.50.300 1 77 5.6E-19 T 13-10-2018 RAM_15405 de5bb839bbc462cf0418f4c863a2f19c 79 Pfam PF00005 ABC transporter 23 71 9.8E-11 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_30035 c4703a67fb210001505713f4f6f15711 257 Gene3D G3DSA:3.50.30.50 1 257 6.6E-85 T 13-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 RAM_30035 c4703a67fb210001505713f4f6f15711 257 Pfam PF04199 Putative cyclase 19 194 1.0E-33 T 13-10-2018 IPR007325 Kynurenine formamidase/cyclase-like GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 RAM_30035 c4703a67fb210001505713f4f6f15711 257 SUPERFAMILY SSF102198 16 255 1.28E-49 T 13-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 RAM_39570 fa88de75a7edbc36b1edca9a4fad708a 1063 Pfam PF05729 NACHT domain 286 443 1.4E-19 T 13-10-2018 IPR007111 NACHT nucleoside triphosphatase RAM_39570 fa88de75a7edbc36b1edca9a4fad708a 1063 SUPERFAMILY SSF52540 281 409 1.13E-7 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_39570 fa88de75a7edbc36b1edca9a4fad708a 1063 SUPERFAMILY SSF52058 804 1022 4.31E-11 T 13-10-2018 RAM_39570 fa88de75a7edbc36b1edca9a4fad708a 1063 Gene3D G3DSA:3.40.50.300 253 417 7.0E-7 T 13-10-2018 RAM_39570 fa88de75a7edbc36b1edca9a4fad708a 1063 Gene3D G3DSA:3.80.10.10 782 1041 2.9E-17 T 13-10-2018 IPR032675 Leucine-rich repeat domain superfamily RAM_46690 c6a41a4c6e31e904a296eac7caa14ba4 420 Gene3D G3DSA:1.20.1250.20 17 401 1.8E-28 T 13-10-2018 RAM_46690 c6a41a4c6e31e904a296eac7caa14ba4 420 SUPERFAMILY SSF103473 19 402 1.31E-35 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_46690 c6a41a4c6e31e904a296eac7caa14ba4 420 Pfam PF07690 Major Facilitator Superfamily 22 236 7.5E-10 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_46690 c6a41a4c6e31e904a296eac7caa14ba4 420 Pfam PF07690 Major Facilitator Superfamily 248 406 9.4E-13 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_46690 c6a41a4c6e31e904a296eac7caa14ba4 420 PRINTS PR01988 Putative bacilysin exporter bacE signature 220 242 1.8E-6 T 13-10-2018 IPR022324 Bacilysin exporter BacE, putative GO:0016020|GO:0042891 RAM_46690 c6a41a4c6e31e904a296eac7caa14ba4 420 PRINTS PR01988 Putative bacilysin exporter bacE signature 146 167 1.8E-6 T 13-10-2018 IPR022324 Bacilysin exporter BacE, putative GO:0016020|GO:0042891 RAM_46690 c6a41a4c6e31e904a296eac7caa14ba4 420 PRINTS PR01988 Putative bacilysin exporter bacE signature 21 43 1.8E-6 T 13-10-2018 IPR022324 Bacilysin exporter BacE, putative GO:0016020|GO:0042891 RAM_46690 c6a41a4c6e31e904a296eac7caa14ba4 420 PRINTS PR01988 Putative bacilysin exporter bacE signature 173 190 1.8E-6 T 13-10-2018 IPR022324 Bacilysin exporter BacE, putative GO:0016020|GO:0042891 RAM_26775 633495ab0fb181b5f04ef2622da879ae 203 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 1 198 35.888 T 13-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 RAM_26775 633495ab0fb181b5f04ef2622da879ae 203 SUPERFAMILY SSF142695 18 173 9.02E-53 T 13-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 RAM_26775 633495ab0fb181b5f04ef2622da879ae 203 Gene3D G3DSA:3.40.50.10990 6 175 1.2E-60 T 13-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 RAM_26775 633495ab0fb181b5f04ef2622da879ae 203 Pfam PF00925 GTP cyclohydrolase II 22 172 8.8E-59 T 13-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 RAM_12210 c1a9254cfe454310ebbef242fe588b1e 670 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 3 391 1.0E-22 T 13-10-2018 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 RAM_12210 c1a9254cfe454310ebbef242fe588b1e 670 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 527 547 1.1E-45 T 13-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RAM_12210 c1a9254cfe454310ebbef242fe588b1e 670 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 442 460 1.1E-45 T 13-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RAM_12210 c1a9254cfe454310ebbef242fe588b1e 670 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 601 623 1.1E-45 T 13-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RAM_12210 c1a9254cfe454310ebbef242fe588b1e 670 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 469 493 1.1E-45 T 13-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RAM_12210 c1a9254cfe454310ebbef242fe588b1e 670 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 497 516 1.1E-45 T 13-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RAM_12210 c1a9254cfe454310ebbef242fe588b1e 670 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 582 597 1.1E-45 T 13-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RAM_12210 c1a9254cfe454310ebbef242fe588b1e 670 Gene3D G3DSA:2.130.10.120 53 405 1.4E-132 T 13-10-2018 RAM_12210 c1a9254cfe454310ebbef242fe588b1e 670 Gene3D G3DSA:3.40.50.1820 2 631 1.4E-132 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_12210 c1a9254cfe454310ebbef242fe588b1e 670 SUPERFAMILY SSF53474 416 668 2.58E-49 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_12210 c1a9254cfe454310ebbef242fe588b1e 670 SUPERFAMILY SSF50993 3 410 1.05E-53 T 13-10-2018 RAM_12210 c1a9254cfe454310ebbef242fe588b1e 670 Pfam PF00326 Prolyl oligopeptidase family 467 668 1.7E-51 T 13-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 RAM_35565 e6c7ceff7b8d0a26515548bd2e5a1320 637 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 571 581 - T 13-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site RAM_35565 e6c7ceff7b8d0a26515548bd2e5a1320 637 Gene3D G3DSA:3.50.30.30 552 563 2.0E-16 T 13-10-2018 RAM_35565 e6c7ceff7b8d0a26515548bd2e5a1320 637 Gene3D G3DSA:3.40.50.200 564 625 2.0E-16 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RAM_35565 e6c7ceff7b8d0a26515548bd2e5a1320 637 Gene3D G3DSA:3.40.50.200 181 372 5.8E-9 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RAM_35565 e6c7ceff7b8d0a26515548bd2e5a1320 637 Pfam PF00082 Subtilase family 253 621 2.3E-18 T 13-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RAM_35565 e6c7ceff7b8d0a26515548bd2e5a1320 637 PRINTS PR00723 Subtilisin serine protease family (S8) signature 570 586 5.3E-7 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related RAM_35565 e6c7ceff7b8d0a26515548bd2e5a1320 637 PRINTS PR00723 Subtilisin serine protease family (S8) signature 202 221 5.3E-7 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related RAM_35565 e6c7ceff7b8d0a26515548bd2e5a1320 637 SUPERFAMILY SSF52743 179 631 7.59E-34 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RAM_41790 087549e07605f630ca2cfb9d4b3279e0 272 Pfam PF00775 Dioxygenase 62 206 1.4E-18 T 13-10-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 RAM_41790 087549e07605f630ca2cfb9d4b3279e0 272 SUPERFAMILY SSF51055 229 270 2.35E-14 T 13-10-2018 IPR036573 Carbohydrate-binding module superfamily 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 RAM_41790 087549e07605f630ca2cfb9d4b3279e0 272 SUPERFAMILY SSF49482 55 206 4.32E-45 T 13-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 RAM_41790 087549e07605f630ca2cfb9d4b3279e0 272 Gene3D G3DSA:2.10.10.20 228 271 4.3E-20 T 13-10-2018 RAM_41790 087549e07605f630ca2cfb9d4b3279e0 272 Gene3D G3DSA:2.60.130.10 52 208 4.7E-60 T 13-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 RAM_41790 087549e07605f630ca2cfb9d4b3279e0 272 SMART SM00495 226 272 4.1E-9 T 13-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 RAM_04915 81039c114cb4756e9fe9690716d09e5d 284 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 5 153 5.5E-15 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_04915 81039c114cb4756e9fe9690716d09e5d 284 Pfam PF04542 Sigma-70 region 2 8 69 7.9E-14 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_04915 81039c114cb4756e9fe9690716d09e5d 284 Gene3D G3DSA:3.10.450.50 164 279 8.7E-6 T 13-10-2018 RAM_04915 81039c114cb4756e9fe9690716d09e5d 284 Gene3D G3DSA:1.10.1740.10 2 73 8.9E-9 T 13-10-2018 RAM_04915 81039c114cb4756e9fe9690716d09e5d 284 SUPERFAMILY SSF54427 166 280 7.28E-10 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_04915 81039c114cb4756e9fe9690716d09e5d 284 Gene3D G3DSA:1.10.10.10 83 156 8.0E-6 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_04915 81039c114cb4756e9fe9690716d09e5d 284 SUPERFAMILY SSF88946 6 88 2.98E-16 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_04915 81039c114cb4756e9fe9690716d09e5d 284 SUPERFAMILY SSF88659 93 153 1.68E-7 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_23350 77d3181f423ec2d7a1c4f093d945ff73 160 Gene3D G3DSA:3.40.140.10 7 160 7.9E-56 T 13-10-2018 RAM_23350 77d3181f423ec2d7a1c4f093d945ff73 160 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 8 105 4.7E-23 T 13-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain RAM_23350 77d3181f423ec2d7a1c4f093d945ff73 160 SUPERFAMILY SSF53927 8 138 2.17E-42 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 RAM_41370 ad85328982fcf2a45d349a90ffd01b03 386 TIGRFAM TIGR00619 sbcd: exonuclease SbcCD, D subunit 5 247 3.6E-48 T 13-10-2018 IPR004593 Nuclease SbcCD subunit D GO:0004519|GO:0006259|GO:0008408 RAM_41370 ad85328982fcf2a45d349a90ffd01b03 386 Pfam PF00149 Calcineurin-like phosphoesterase 5 221 9.5E-13 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 RAM_41370 ad85328982fcf2a45d349a90ffd01b03 386 Gene3D G3DSA:3.60.21.10 2 270 1.8E-85 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like RAM_41370 ad85328982fcf2a45d349a90ffd01b03 386 SUPERFAMILY SSF56300 5 277 4.16E-52 T 13-10-2018 RAM_45750 f858702842f1dd4994404bb1cedf5d01 730 Gene3D G3DSA:1.10.8.60 7 229 1.8E-93 T 13-10-2018 RAM_45750 f858702842f1dd4994404bb1cedf5d01 730 Pfam PF13177 DNA polymerase III, delta subunit 19 177 1.5E-39 T 13-10-2018 RAM_45750 f858702842f1dd4994404bb1cedf5d01 730 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 237 363 1.2E-17 T 13-10-2018 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 RAM_45750 f858702842f1dd4994404bb1cedf5d01 730 SUPERFAMILY SSF52540 32 221 8.93E-52 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_45750 f858702842f1dd4994404bb1cedf5d01 730 Gene3D G3DSA:1.20.272.10 244 365 1.2E-6 T 13-10-2018 RAM_45750 f858702842f1dd4994404bb1cedf5d01 730 SUPERFAMILY SSF48019 246 362 2.47E-22 T 13-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 RAM_45750 f858702842f1dd4994404bb1cedf5d01 730 Gene3D G3DSA:3.40.50.300 12 178 1.8E-93 T 13-10-2018 RAM_45750 f858702842f1dd4994404bb1cedf5d01 730 SMART SM00382 36 180 5.0E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_45750 f858702842f1dd4994404bb1cedf5d01 730 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 4 361 4.3E-113 T 13-10-2018 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 RAM_22920 e394332521ccf391e1d823db32fa085c 314 SUPERFAMILY SSF53613 2 291 5.92E-67 T 13-10-2018 IPR029056 Ribokinase-like RAM_22920 e394332521ccf391e1d823db32fa085c 314 TIGRFAM TIGR03828 pfkB: 1-phosphofructokinase 2 295 8.6E-100 T 13-10-2018 IPR022463 Fructose 1-phosphate kinase GO:0008662 KEGG: 00051+2.7.1.56 RAM_22920 e394332521ccf391e1d823db32fa085c 314 Gene3D G3DSA:3.40.1190.20 1 302 2.0E-104 T 13-10-2018 IPR029056 Ribokinase-like RAM_22920 e394332521ccf391e1d823db32fa085c 314 TIGRFAM TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family 2 294 2.3E-101 T 13-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 RAM_22920 e394332521ccf391e1d823db32fa085c 314 PIRSF PIRSF000535 1 298 2.6E-76 T 13-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 RAM_22920 e394332521ccf391e1d823db32fa085c 314 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 246 259 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RAM_22920 e394332521ccf391e1d823db32fa085c 314 PRINTS PR00990 Ribokinase signature 217 228 2.0E-5 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 RAM_22920 e394332521ccf391e1d823db32fa085c 314 PRINTS PR00990 Ribokinase signature 31 50 2.0E-5 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 RAM_22920 e394332521ccf391e1d823db32fa085c 314 Pfam PF00294 pfkB family carbohydrate kinase 20 290 2.7E-45 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB RAM_06790 9627529ce22e62210764b3f655b5edca 257 Gene3D G3DSA:3.30.110.70 34 120 5.7E-12 T 13-10-2018 RAM_06790 9627529ce22e62210764b3f655b5edca 257 Gene3D G3DSA:3.30.110.70 147 241 1.7E-12 T 13-10-2018 RAM_06790 9627529ce22e62210764b3f655b5edca 257 SUPERFAMILY SSF117782 34 119 9.02E-15 T 13-10-2018 IPR035439 UPF0145 domain superfamily RAM_06790 9627529ce22e62210764b3f655b5edca 257 Pfam PF01906 Putative heavy-metal-binding 59 117 1.1E-9 T 13-10-2018 IPR002765 Uncharacterised protein family UPF0145 RAM_06790 9627529ce22e62210764b3f655b5edca 257 Pfam PF01906 Putative heavy-metal-binding 153 238 1.4E-11 T 13-10-2018 IPR002765 Uncharacterised protein family UPF0145 RAM_06790 9627529ce22e62210764b3f655b5edca 257 SUPERFAMILY SSF117782 151 238 8.5E-15 T 13-10-2018 IPR035439 UPF0145 domain superfamily RAM_26235 c451690243ce2ec6d01933cfe487bd0e 290 Gene3D G3DSA:3.40.50.150 52 284 1.0E-39 T 13-10-2018 RAM_26235 c451690243ce2ec6d01933cfe487bd0e 290 SUPERFAMILY SSF53335 4 270 1.27E-41 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_26235 c451690243ce2ec6d01933cfe487bd0e 290 Hamap MF_00198 Polyamine aminopropyltransferase [speE]. 1 277 16.526 T 13-10-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 RAM_26235 c451690243ce2ec6d01933cfe487bd0e 290 Pfam PF01564 Spermine/spermidine synthase domain 58 208 3.4E-12 T 13-10-2018 RAM_42155 8bf182b8ec5df602a2e88cefe5ad8b61 381 Gene3D G3DSA:2.60.120.260 4 162 6.0E-42 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_42155 8bf182b8ec5df602a2e88cefe5ad8b61 381 Gene3D G3DSA:3.40.50.1110 168 381 5.1E-67 T 13-10-2018 IPR036514 SGNH hydrolase superfamily RAM_42155 8bf182b8ec5df602a2e88cefe5ad8b61 381 Pfam PF14606 GDSL-like Lipase/Acylhydrolase family 173 272 1.1E-15 T 13-10-2018 IPR013830 SGNH hydrolase-type esterase domain RAM_42155 8bf182b8ec5df602a2e88cefe5ad8b61 381 SUPERFAMILY SSF52266 168 378 1.5E-24 T 13-10-2018 RAM_28080 d45a5a5ecf183fef5db2a7036f39c48a 654 SUPERFAMILY SSF51126 21 613 3.14E-21 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor RAM_28080 d45a5a5ecf183fef5db2a7036f39c48a 654 Pfam PF13229 Right handed beta helix region 446 577 9.3E-6 T 13-10-2018 IPR039448 Right handed beta helix domain RAM_28080 d45a5a5ecf183fef5db2a7036f39c48a 654 Gene3D G3DSA:2.160.20.10 21 170 1.9E-16 T 13-10-2018 IPR012334 Pectin lyase fold RAM_28080 d45a5a5ecf183fef5db2a7036f39c48a 654 SMART SM00710 465 486 470.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_28080 d45a5a5ecf183fef5db2a7036f39c48a 654 SMART SM00710 402 424 2300.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_28080 d45a5a5ecf183fef5db2a7036f39c48a 654 SMART SM00710 503 530 220.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_28080 d45a5a5ecf183fef5db2a7036f39c48a 654 SMART SM00710 563 601 2100.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_28080 d45a5a5ecf183fef5db2a7036f39c48a 654 SMART SM00710 537 559 4300.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_28080 d45a5a5ecf183fef5db2a7036f39c48a 654 SMART SM00710 437 464 9000.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_10680 812ff0d0b145e7431417ef595ad1929e 327 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 14 326 58.355 T 13-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 RAM_10680 812ff0d0b145e7431417ef595ad1929e 327 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 233 323 9.9E-28 T 13-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 RAM_10680 812ff0d0b145e7431417ef595ad1929e 327 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 119 195 1.4E-26 T 13-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 RAM_10680 812ff0d0b145e7431417ef595ad1929e 327 Gene3D G3DSA:3.40.47.10 182 326 1.0E-41 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_10680 812ff0d0b145e7431417ef595ad1929e 327 SUPERFAMILY SSF53901 16 321 7.16E-63 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_10680 812ff0d0b145e7431417ef595ad1929e 327 Gene3D G3DSA:3.40.47.10 8 181 1.5E-64 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_10680 812ff0d0b145e7431417ef595ad1929e 327 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 16 322 1.4E-99 T 13-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 RAM_20580 bfca001c3040baa07fb7d9a8e0adf3f7 433 Pfam PF03176 MMPL family 64 203 9.0E-8 T 13-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 RAM_20580 bfca001c3040baa07fb7d9a8e0adf3f7 433 SUPERFAMILY SSF82866 26 203 3.01E-9 T 13-10-2018 RAM_20580 bfca001c3040baa07fb7d9a8e0adf3f7 433 SUPERFAMILY SSF82866 274 429 2.88E-11 T 13-10-2018 RAM_14220 23524c357ed468481098aec5a39cb005 334 PIRSF PIRSF000149 1 333 6.0E-131 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RAM_14220 23524c357ed468481098aec5a39cb005 334 SUPERFAMILY SSF55347 152 313 2.38E-70 T 13-10-2018 RAM_14220 23524c357ed468481098aec5a39cb005 334 SMART SM00846 3 152 3.0E-93 T 13-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RAM_14220 23524c357ed468481098aec5a39cb005 334 SUPERFAMILY SSF51735 2 179 1.21E-62 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_14220 23524c357ed468481098aec5a39cb005 334 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 157 312 6.1E-67 T 13-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RAM_14220 23524c357ed468481098aec5a39cb005 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 146 164 1.5E-38 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RAM_14220 23524c357ed468481098aec5a39cb005 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 229 246 1.5E-38 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RAM_14220 23524c357ed468481098aec5a39cb005 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 269 284 1.5E-38 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RAM_14220 23524c357ed468481098aec5a39cb005 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 173 189 1.5E-38 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RAM_14220 23524c357ed468481098aec5a39cb005 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 110 123 1.5E-38 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RAM_14220 23524c357ed468481098aec5a39cb005 334 Gene3D G3DSA:3.30.360.10 151 314 2.8E-149 T 13-10-2018 RAM_14220 23524c357ed468481098aec5a39cb005 334 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 103 8.6E-38 T 13-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RAM_14220 23524c357ed468481098aec5a39cb005 334 Gene3D G3DSA:3.40.50.720 4 324 2.8E-149 T 13-10-2018 RAM_14220 23524c357ed468481098aec5a39cb005 334 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 150 157 - T 13-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RAM_14220 23524c357ed468481098aec5a39cb005 334 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 324 1.2E-132 T 13-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RAM_29970 6fcba5be374555883443cfbe6158cd31 366 Gene3D G3DSA:3.40.50.720 1 131 4.4E-31 T 13-10-2018 RAM_29970 6fcba5be374555883443cfbe6158cd31 366 SUPERFAMILY SSF55347 132 315 2.29E-29 T 13-10-2018 RAM_29970 6fcba5be374555883443cfbe6158cd31 366 Gene3D G3DSA:3.30.360.10 132 345 6.9E-31 T 13-10-2018 RAM_29970 6fcba5be374555883443cfbe6158cd31 366 SUPERFAMILY SSF51735 3 154 7.55E-40 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_29970 6fcba5be374555883443cfbe6158cd31 366 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 7 121 5.5E-17 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 RAM_23325 3856a6c235814778fd07254b51b7c17b 295 PIRSF PIRSF000103 1 291 3.5E-78 T 13-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 RAM_23325 3856a6c235814778fd07254b51b7c17b 295 Gene3D G3DSA:1.10.1040.10 162 291 1.9E-37 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RAM_23325 3856a6c235814778fd07254b51b7c17b 295 SUPERFAMILY SSF51735 1 162 5.05E-50 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_23325 3856a6c235814778fd07254b51b7c17b 295 TIGRFAM TIGR01505 tartro_sem_red: 2-hydroxy-3-oxopropionate reductase 2 289 6.9E-105 T 13-10-2018 IPR006398 2-hydroxy-3-oxopropionate reductase GO:0008679|GO:0046487|GO:0055114 KEGG: 00630+1.1.1.60 RAM_23325 3856a6c235814778fd07254b51b7c17b 295 Gene3D G3DSA:3.40.50.720 1 161 4.0E-57 T 13-10-2018 RAM_23325 3856a6c235814778fd07254b51b7c17b 295 SUPERFAMILY SSF48179 162 289 2.27E-36 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RAM_23325 3856a6c235814778fd07254b51b7c17b 295 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 164 283 2.2E-34 T 13-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 RAM_23325 3856a6c235814778fd07254b51b7c17b 295 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 5 18 - T 13-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 RAM_23325 3856a6c235814778fd07254b51b7c17b 295 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 2 161 2.3E-52 T 13-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 RAM_18955 50fa48b765e1d5d15aa90394bc0ca9cc 436 Pfam PF07690 Major Facilitator Superfamily 18 335 9.0E-40 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_18955 50fa48b765e1d5d15aa90394bc0ca9cc 436 Gene3D G3DSA:1.20.1250.20 11 381 8.8E-49 T 13-10-2018 RAM_18955 50fa48b765e1d5d15aa90394bc0ca9cc 436 SUPERFAMILY SSF103473 7 384 5.89E-57 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_03365 0c7db5c8d5c4442690e2a2c9a3b3a655 261 Hamap MF_01924 D-alanyl-D-alanine dipeptidase [ddpX]. 34 254 32.694 T 13-10-2018 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 RAM_03365 0c7db5c8d5c4442690e2a2c9a3b3a655 261 Pfam PF01427 D-ala-D-ala dipeptidase 33 157 2.6E-19 T 13-10-2018 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 RAM_03365 0c7db5c8d5c4442690e2a2c9a3b3a655 261 Pfam PF01427 D-ala-D-ala dipeptidase 187 255 4.0E-15 T 13-10-2018 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 RAM_03365 0c7db5c8d5c4442690e2a2c9a3b3a655 261 PIRSF PIRSF026671 10 260 2.7E-72 T 13-10-2018 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 RAM_03365 0c7db5c8d5c4442690e2a2c9a3b3a655 261 Gene3D G3DSA:3.30.1380.10 32 256 1.6E-71 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 RAM_03365 0c7db5c8d5c4442690e2a2c9a3b3a655 261 SUPERFAMILY SSF55166 33 255 9.42E-62 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 RAM_01070 572a2e95d4761e15879731e8a1895f73 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 168 1.5E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_01070 572a2e95d4761e15879731e8a1895f73 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 76 87 1.5E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_01070 572a2e95d4761e15879731e8a1895f73 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 129 137 1.5E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_01070 572a2e95d4761e15879731e8a1895f73 241 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 180 8.9E-7 T 13-10-2018 RAM_01070 572a2e95d4761e15879731e8a1895f73 241 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 136 164 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_01070 572a2e95d4761e15879731e8a1895f73 241 Gene3D G3DSA:3.40.50.720 1 240 9.8E-82 T 13-10-2018 RAM_01070 572a2e95d4761e15879731e8a1895f73 241 SUPERFAMILY SSF51735 5 240 1.37E-79 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_01070 572a2e95d4761e15879731e8a1895f73 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 203 223 6.1E-48 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_01070 572a2e95d4761e15879731e8a1895f73 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 149 168 6.1E-48 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_01070 572a2e95d4761e15879731e8a1895f73 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 123 139 6.1E-48 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_01070 572a2e95d4761e15879731e8a1895f73 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 6.1E-48 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_01070 572a2e95d4761e15879731e8a1895f73 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 170 187 6.1E-48 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_01070 572a2e95d4761e15879731e8a1895f73 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 76 87 6.1E-48 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_01070 572a2e95d4761e15879731e8a1895f73 241 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 239 4.0E-65 T 13-10-2018 RAM_15670 4daca5b424f6e7aefdf5c17618356045 327 Gene3D G3DSA:1.10.10.10 11 70 3.5E-14 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_15670 4daca5b424f6e7aefdf5c17618356045 327 Pfam PF08279 HTH domain 12 67 1.9E-15 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 RAM_15670 4daca5b424f6e7aefdf5c17618356045 327 PIRSF PIRSF016838 3 327 5.8E-22 T 13-10-2018 IPR028349 Protein PafC RAM_15670 4daca5b424f6e7aefdf5c17618356045 327 ProSitePatterns PS00894 DeoR-type HTH domain signature. 12 46 - T 13-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 RAM_15670 4daca5b424f6e7aefdf5c17618356045 327 SUPERFAMILY SSF46785 10 68 6.51E-9 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_15670 4daca5b424f6e7aefdf5c17618356045 327 Pfam PF13280 WYL domain 143 319 1.1E-24 T 13-10-2018 IPR026881 WYL domain RAM_15275 5d05fc762f8aa51da47eb976699776f0 612 Gene3D G3DSA:1.10.10.10 341 528 5.9E-48 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_15275 5d05fc762f8aa51da47eb976699776f0 612 TIGRFAM TIGR01389 recQ: ATP-dependent DNA helicase RecQ 14 609 4.2E-236 T 13-10-2018 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial GO:0004003|GO:0006310|GO:0009432 RAM_15275 5d05fc762f8aa51da47eb976699776f0 612 Gene3D G3DSA:3.40.50.300 208 340 2.7E-39 T 13-10-2018 RAM_15275 5d05fc762f8aa51da47eb976699776f0 612 SUPERFAMILY SSF52540 207 460 2.72E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_15275 5d05fc762f8aa51da47eb976699776f0 612 Pfam PF09382 RQC domain 406 519 2.1E-33 T 13-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 RAM_15275 5d05fc762f8aa51da47eb976699776f0 612 Gene3D G3DSA:3.40.50.300 3 207 1.0E-78 T 13-10-2018 RAM_15275 5d05fc762f8aa51da47eb976699776f0 612 SMART SM00341 539 611 1.5E-11 T 13-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 RAM_15275 5d05fc762f8aa51da47eb976699776f0 612 Pfam PF00270 DEAD/DEAH box helicase 28 186 6.2E-18 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RAM_15275 5d05fc762f8aa51da47eb976699776f0 612 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 14 466 3.5E-150 T 13-10-2018 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 RAM_15275 5d05fc762f8aa51da47eb976699776f0 612 SMART SM00490 250 331 1.8E-23 T 13-10-2018 IPR001650 Helicase, C-terminal RAM_15275 5d05fc762f8aa51da47eb976699776f0 612 SMART SM00956 411 517 1.9E-43 T 13-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 RAM_15275 5d05fc762f8aa51da47eb976699776f0 612 SMART SM00487 21 217 2.5E-27 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RAM_15275 5d05fc762f8aa51da47eb976699776f0 612 SUPERFAMILY SSF52540 8 196 5.86E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_15275 5d05fc762f8aa51da47eb976699776f0 612 Pfam PF16124 RecQ zinc-binding 343 404 3.8E-18 T 13-10-2018 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain RAM_15275 5d05fc762f8aa51da47eb976699776f0 612 Pfam PF00570 HRDC domain 544 609 7.6E-23 T 13-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 RAM_15275 5d05fc762f8aa51da47eb976699776f0 612 SUPERFAMILY SSF47819 539 611 5.23E-22 T 13-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 RAM_15275 5d05fc762f8aa51da47eb976699776f0 612 Gene3D G3DSA:1.10.150.80 543 611 2.4E-23 T 13-10-2018 RAM_15275 5d05fc762f8aa51da47eb976699776f0 612 Pfam PF00271 Helicase conserved C-terminal domain 225 330 7.3E-17 T 13-10-2018 IPR001650 Helicase, C-terminal RAM_21210 5fcaf2dbf1486ca1b4d5b5ae01767e7e 439 Gene3D G3DSA:3.40.630.10 102 439 1.7E-77 T 13-10-2018 RAM_21210 5fcaf2dbf1486ca1b4d5b5ae01767e7e 439 SUPERFAMILY SSF53187 104 430 2.25E-58 T 13-10-2018 RAM_21210 5fcaf2dbf1486ca1b4d5b5ae01767e7e 439 Pfam PF00246 Zinc carboxypeptidase 117 405 5.2E-47 T 13-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 RAM_21210 5fcaf2dbf1486ca1b4d5b5ae01767e7e 439 SMART SM00631 109 415 5.6E-37 T 13-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 RAM_27575 244564892a5d12f0f9ac9de228fbc46c 1029 SUPERFAMILY SSF52777 620 785 1.22E-27 T 13-10-2018 RAM_27575 244564892a5d12f0f9ac9de228fbc46c 1029 SUPERFAMILY SSF52777 801 1023 4.56E-23 T 13-10-2018 RAM_27575 244564892a5d12f0f9ac9de228fbc46c 1029 Pfam PF00501 AMP-binding enzyme 34 416 2.6E-65 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_27575 244564892a5d12f0f9ac9de228fbc46c 1029 Pfam PF00668 Condensation domain 612 1025 2.4E-30 T 13-10-2018 IPR001242 Condensation domain RAM_27575 244564892a5d12f0f9ac9de228fbc46c 1029 SUPERFAMILY SSF47336 521 589 1.57E-8 T 13-10-2018 IPR036736 ACP-like superfamily RAM_27575 244564892a5d12f0f9ac9de228fbc46c 1029 Gene3D G3DSA:3.30.559.30 798 1028 1.0E-21 T 13-10-2018 RAM_27575 244564892a5d12f0f9ac9de228fbc46c 1029 Gene3D G3DSA:3.40.50.12780 22 410 4.1E-97 T 13-10-2018 RAM_27575 244564892a5d12f0f9ac9de228fbc46c 1029 ProSitePatterns PS00455 Putative AMP-binding domain signature. 164 175 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_27575 244564892a5d12f0f9ac9de228fbc46c 1029 SMART SM00823 Phosphopantetheine attachment site 522 590 0.0049 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_27575 244564892a5d12f0f9ac9de228fbc46c 1029 Gene3D G3DSA:3.30.300.30 411 510 8.4E-19 T 13-10-2018 RAM_27575 244564892a5d12f0f9ac9de228fbc46c 1029 Pfam PF00550 Phosphopantetheine attachment site 524 586 3.2E-5 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_27575 244564892a5d12f0f9ac9de228fbc46c 1029 SUPERFAMILY SSF56801 29 515 1.44E-105 T 13-10-2018 RAM_27575 244564892a5d12f0f9ac9de228fbc46c 1029 Gene3D G3DSA:3.30.559.10 607 797 6.2E-32 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_27575 244564892a5d12f0f9ac9de228fbc46c 1029 Gene3D G3DSA:1.10.1200.10 518 593 1.7E-11 T 13-10-2018 IPR036736 ACP-like superfamily RAM_10195 5f95dd36c9095eb804f678969cab14ba 451 Gene3D G3DSA:1.20.1720.10 1 198 6.2E-57 T 13-10-2018 RAM_10195 5f95dd36c9095eb804f678969cab14ba 451 Gene3D G3DSA:1.20.1250.20 247 431 4.6E-14 T 13-10-2018 RAM_10195 5f95dd36c9095eb804f678969cab14ba 451 Pfam PF07690 Major Facilitator Superfamily 7 397 4.9E-52 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_10195 5f95dd36c9095eb804f678969cab14ba 451 SUPERFAMILY SSF103473 1 425 1.14E-64 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_10195 5f95dd36c9095eb804f678969cab14ba 451 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 4 400 9.0E-74 T 13-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 RAM_27445 3f46b45a06d52b9ddd9d9abb5c4fb79a 421 Pfam PF07690 Major Facilitator Superfamily 20 283 2.2E-23 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_27445 3f46b45a06d52b9ddd9d9abb5c4fb79a 421 SUPERFAMILY SSF103473 13 414 2.49E-52 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_27445 3f46b45a06d52b9ddd9d9abb5c4fb79a 421 Gene3D G3DSA:1.20.1250.20 10 202 2.6E-21 T 13-10-2018 RAM_27445 3f46b45a06d52b9ddd9d9abb5c4fb79a 421 Gene3D G3DSA:1.20.1250.20 230 417 1.7E-19 T 13-10-2018 RAM_35755 71ee0999aa55144c62a52e09ab06ddcb 275 Gene3D G3DSA:1.10.12.10 217 275 1.8E-22 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal RAM_35755 71ee0999aa55144c62a52e09ab06ddcb 275 Pfam PF00378 Enoyl-CoA hydratase/isomerase 23 274 2.3E-48 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RAM_35755 71ee0999aa55144c62a52e09ab06ddcb 275 Gene3D G3DSA:3.90.226.10 1 216 2.9E-74 T 13-10-2018 RAM_35755 71ee0999aa55144c62a52e09ab06ddcb 275 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 115 135 - T 13-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 RAM_35755 71ee0999aa55144c62a52e09ab06ddcb 275 SUPERFAMILY SSF52096 11 275 4.23E-77 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_13475 cf6c3e7fa963f0c6dd6656053137ddc8 145 Pfam PF01641 SelR domain 17 137 1.8E-51 T 13-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 RAM_13475 cf6c3e7fa963f0c6dd6656053137ddc8 145 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 13 141 3.9E-49 T 13-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 RAM_13475 cf6c3e7fa963f0c6dd6656053137ddc8 145 SUPERFAMILY SSF51316 12 141 1.26E-54 T 13-10-2018 IPR011057 Mss4-like superfamily RAM_13475 cf6c3e7fa963f0c6dd6656053137ddc8 145 Gene3D G3DSA:2.170.150.20 2 142 2.0E-58 T 13-10-2018 RAM_23750 ffa437d2ea9897c14228c624ce6c1178 305 SUPERFAMILY SSF56112 30 284 3.64E-21 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_23750 ffa437d2ea9897c14228c624ce6c1178 305 Pfam PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase 55 284 4.1E-12 T 13-10-2018 IPR006748 Aminoglycoside/hydroxyurea antibiotic resistance kinase GO:0006468|GO:0016773|GO:0019748 RAM_23750 ffa437d2ea9897c14228c624ce6c1178 305 Gene3D G3DSA:3.90.1200.10 122 275 3.9E-5 T 13-10-2018 RAM_17620 fdb439ff731657da0e989d8f3e5f3617 621 ProSitePatterns PS00211 ABC transporters family signature. 443 457 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_17620 fdb439ff731657da0e989d8f3e5f3617 621 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 89 271 5.7E-17 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_17620 fdb439ff731657da0e989d8f3e5f3617 621 Gene3D G3DSA:3.40.50.300 294 617 1.7E-79 T 13-10-2018 RAM_17620 fdb439ff731657da0e989d8f3e5f3617 621 Gene3D G3DSA:1.10.3720.10 63 266 3.6E-15 T 13-10-2018 IPR035906 MetI-like superfamily RAM_17620 fdb439ff731657da0e989d8f3e5f3617 621 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 531 604 5.7E-18 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RAM_17620 fdb439ff731657da0e989d8f3e5f3617 621 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 531 584 1.7E-12 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RAM_17620 fdb439ff731657da0e989d8f3e5f3617 621 SUPERFAMILY SSF52540 283 534 2.72E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_17620 fdb439ff731657da0e989d8f3e5f3617 621 Pfam PF00005 ABC transporter 317 470 1.9E-20 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_17620 fdb439ff731657da0e989d8f3e5f3617 621 SMART SM00382 325 527 3.2E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_17620 fdb439ff731657da0e989d8f3e5f3617 621 SUPERFAMILY SSF161098 68 251 1.96E-19 T 13-10-2018 IPR035906 MetI-like superfamily RAM_28085 04c11940235133fc6aa95775e0aa0492 91 Gene3D G3DSA:1.10.10.10 1 91 1.6E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_28085 04c11940235133fc6aa95775e0aa0492 91 SMART SM00345 1 52 2.9E-7 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_28085 04c11940235133fc6aa95775e0aa0492 91 Pfam PF00392 Bacterial regulatory proteins, gntR family 2 52 4.7E-13 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_28085 04c11940235133fc6aa95775e0aa0492 91 SUPERFAMILY SSF46785 2 67 7.55E-15 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_28085 04c11940235133fc6aa95775e0aa0492 91 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 26 42 2.6E-5 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_28085 04c11940235133fc6aa95775e0aa0492 91 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 12 26 2.6E-5 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_36020 cfc032b153777e340b06877d1a9ac405 404 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 346 355 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RAM_36020 cfc032b153777e340b06877d1a9ac405 404 Pfam PF00067 Cytochrome P450 275 374 1.0E-20 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_36020 cfc032b153777e340b06877d1a9ac405 404 Gene3D G3DSA:1.10.630.10 2 404 7.0E-112 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_36020 cfc032b153777e340b06877d1a9ac405 404 PRINTS PR00359 B-class P450 signature 90 101 1.3E-50 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_36020 cfc032b153777e340b06877d1a9ac405 404 PRINTS PR00359 B-class P450 signature 195 217 1.3E-50 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_36020 cfc032b153777e340b06877d1a9ac405 404 PRINTS PR00359 B-class P450 signature 295 322 1.3E-50 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_36020 cfc032b153777e340b06877d1a9ac405 404 PRINTS PR00359 B-class P450 signature 353 364 1.3E-50 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_36020 cfc032b153777e340b06877d1a9ac405 404 PRINTS PR00359 B-class P450 signature 142 158 1.3E-50 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_36020 cfc032b153777e340b06877d1a9ac405 404 PRINTS PR00359 B-class P450 signature 159 174 1.3E-50 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_36020 cfc032b153777e340b06877d1a9ac405 404 PRINTS PR00359 B-class P450 signature 344 353 1.3E-50 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_36020 cfc032b153777e340b06877d1a9ac405 404 PRINTS PR00359 B-class P450 signature 323 338 1.3E-50 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_36020 cfc032b153777e340b06877d1a9ac405 404 PRINTS PR00359 B-class P450 signature 277 288 1.3E-50 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_36020 cfc032b153777e340b06877d1a9ac405 404 PRINTS PR00385 P450 superfamily signature 344 353 1.2E-8 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_36020 cfc032b153777e340b06877d1a9ac405 404 PRINTS PR00385 P450 superfamily signature 353 364 1.2E-8 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_36020 cfc032b153777e340b06877d1a9ac405 404 PRINTS PR00385 P450 superfamily signature 241 258 1.2E-8 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_36020 cfc032b153777e340b06877d1a9ac405 404 PRINTS PR00385 P450 superfamily signature 277 288 1.2E-8 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_36020 cfc032b153777e340b06877d1a9ac405 404 SUPERFAMILY SSF48264 15 404 9.17E-87 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_08245 54030056e0ffc932aa8434caab376e0c 191 Gene3D G3DSA:1.10.10.10 1 104 7.1E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_08245 54030056e0ffc932aa8434caab376e0c 191 Pfam PF03551 Transcriptional regulator PadR-like family 14 88 6.0E-12 T 13-10-2018 IPR005149 Transcription regulator PadR, N-terminal RAM_08245 54030056e0ffc932aa8434caab376e0c 191 SUPERFAMILY SSF46785 10 182 7.53E-33 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_36610 ca5ad4a0c0b94cf2fc004f0b66a12180 62 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 6 40 1.2E-6 T 13-10-2018 RAM_36610 ca5ad4a0c0b94cf2fc004f0b66a12180 62 Gene3D G3DSA:3.40.50.720 1 59 6.6E-7 T 13-10-2018 RAM_36610 ca5ad4a0c0b94cf2fc004f0b66a12180 62 SUPERFAMILY SSF51735 7 40 5.2E-7 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_12320 fb53d7b4c278a86eb047147635efaf99 387 SUPERFAMILY SSF56645 4 244 9.69E-63 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_12320 fb53d7b4c278a86eb047147635efaf99 387 Gene3D G3DSA:1.10.540.10 1 121 6.7E-33 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_12320 fb53d7b4c278a86eb047147635efaf99 387 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 122 6.1E-22 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_12320 fb53d7b4c278a86eb047147635efaf99 387 SUPERFAMILY SSF47203 231 384 1.06E-24 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_12320 fb53d7b4c278a86eb047147635efaf99 387 Gene3D G3DSA:2.40.110.10 126 234 3.1E-31 T 13-10-2018 RAM_12320 fb53d7b4c278a86eb047147635efaf99 387 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 231 380 4.9E-33 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_12320 fb53d7b4c278a86eb047147635efaf99 387 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 127 213 3.4E-19 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RAM_12320 fb53d7b4c278a86eb047147635efaf99 387 Gene3D G3DSA:1.20.140.10 235 386 8.6E-39 T 13-10-2018 RAM_07780 5aac43b769e173806ddeed4a120784e1 590 Gene3D G3DSA:3.20.20.80 26 317 4.4E-20 T 13-10-2018 RAM_07780 5aac43b769e173806ddeed4a120784e1 590 Gene3D G3DSA:2.60.120.260 431 589 1.2E-22 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_07780 5aac43b769e173806ddeed4a120784e1 590 SUPERFAMILY SSF51445 32 278 8.43E-24 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_07780 5aac43b769e173806ddeed4a120784e1 590 SUPERFAMILY SSF49785 443 563 2.34E-15 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_07780 5aac43b769e173806ddeed4a120784e1 590 Pfam PF01120 Alpha-L-fucosidase 72 240 2.1E-11 T 13-10-2018 IPR000933 Glycoside hydrolase, family 29 GO:0004560|GO:0005975 KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 RAM_07780 5aac43b769e173806ddeed4a120784e1 590 SMART SM00812 21 386 6.8E-5 T 13-10-2018 IPR000933 Glycoside hydrolase, family 29 GO:0004560|GO:0005975 KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 RAM_07780 5aac43b769e173806ddeed4a120784e1 590 Pfam PF00754 F5/8 type C domain 445 562 5.7E-12 T 13-10-2018 IPR000421 Coagulation factor 5/8 C-terminal domain RAM_34740 22c73b053abda8749117c9416ef94227 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 3.1E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_34740 22c73b053abda8749117c9416ef94227 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 3.1E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_34740 22c73b053abda8749117c9416ef94227 204 ProSitePatterns PS01081 TetR-type HTH domain signature. 24 54 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RAM_34740 22c73b053abda8749117c9416ef94227 204 Gene3D G3DSA:1.10.357.10 1 203 3.2E-42 T 13-10-2018 RAM_34740 22c73b053abda8749117c9416ef94227 204 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 58 2.3E-16 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_34740 22c73b053abda8749117c9416ef94227 204 SUPERFAMILY SSF46689 7 76 1.49E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_16500 4e55cdbe72ddecc3a30941c946c00e7a 444 Gene3D G3DSA:3.40.190.10 60 443 5.3E-56 T 13-10-2018 RAM_16500 4e55cdbe72ddecc3a30941c946c00e7a 444 Pfam PF13416 Bacterial extracellular solute-binding protein 69 332 6.8E-21 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein RAM_16500 4e55cdbe72ddecc3a30941c946c00e7a 444 SUPERFAMILY SSF53850 71 433 2.54E-44 T 13-10-2018 RAM_00020 5358021253d261dc10c0c367e84a63dc 384 Gene3D G3DSA:3.40.50.300 6 359 3.7E-93 T 13-10-2018 RAM_00020 5358021253d261dc10c0c367e84a63dc 384 ProSitePatterns PS00617 RecF protein signature 1. 117 137 - T 13-10-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 RAM_00020 5358021253d261dc10c0c367e84a63dc 384 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 384 94.159 T 13-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 RAM_00020 5358021253d261dc10c0c367e84a63dc 384 SMART SM00382 22 380 0.0054 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_00020 5358021253d261dc10c0c367e84a63dc 384 SUPERFAMILY SSF52540 2 381 2.16E-37 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_00020 5358021253d261dc10c0c367e84a63dc 384 Gene3D G3DSA:1.20.1050.90 120 326 3.7E-93 T 13-10-2018 RAM_00020 5358021253d261dc10c0c367e84a63dc 384 ProSitePatterns PS00618 RecF protein signature 2. 327 345 - T 13-10-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 RAM_00020 5358021253d261dc10c0c367e84a63dc 384 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 2 370 1.7E-116 T 13-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 RAM_00020 5358021253d261dc10c0c367e84a63dc 384 Pfam PF02463 RecF/RecN/SMC N terminal domain 2 360 1.1E-17 T 13-10-2018 IPR003395 RecF/RecN/SMC, N-terminal RAM_33475 e2117abbc5fa090ec2844fabefbe81ac 213 Pfam PF03861 ANTAR domain 144 197 2.0E-20 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 RAM_33475 e2117abbc5fa090ec2844fabefbe81ac 213 SMART SM00065 1 147 7.9E-6 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_33475 e2117abbc5fa090ec2844fabefbe81ac 213 Gene3D G3DSA:3.30.450.40 1 147 8.7E-23 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_33475 e2117abbc5fa090ec2844fabefbe81ac 213 SMART SM01012 142 197 1.6E-19 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 RAM_33475 e2117abbc5fa090ec2844fabefbe81ac 213 Pfam PF13185 GAF domain 3 137 6.1E-11 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_33475 e2117abbc5fa090ec2844fabefbe81ac 213 PIRSF PIRSF036625 1 206 3.9E-66 T 13-10-2018 IPR012074 GAF-ANTAR transcription anti-termination regulator, putative RAM_33475 e2117abbc5fa090ec2844fabefbe81ac 213 Gene3D G3DSA:1.10.10.10 148 204 8.8E-10 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_33475 e2117abbc5fa090ec2844fabefbe81ac 213 SUPERFAMILY SSF52172 138 197 5.47E-8 T 13-10-2018 IPR011006 CheY-like superfamily RAM_33475 e2117abbc5fa090ec2844fabefbe81ac 213 SUPERFAMILY SSF55781 4 146 6.32E-22 T 13-10-2018 RAM_46250 8b954ccef2ac302188d9ec3488176d0c 276 Pfam PF02626 Carboxyltransferase domain, subdomain A and B 21 275 2.0E-82 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B RAM_46250 8b954ccef2ac302188d9ec3488176d0c 276 SUPERFAMILY SSF50891 168 275 7.21E-12 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily RAM_46250 8b954ccef2ac302188d9ec3488176d0c 276 Gene3D G3DSA:2.40.100.10 166 276 3.9E-41 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily RAM_46250 8b954ccef2ac302188d9ec3488176d0c 276 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 1 275 3.6E-85 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B RAM_46250 8b954ccef2ac302188d9ec3488176d0c 276 SMART SM00797 20 276 1.3E-89 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B RAM_01055 1ca10ae3fa4cd902c63469225eb40150 368 SUPERFAMILY SSF53383 12 367 1.55E-109 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_01055 1ca10ae3fa4cd902c63469225eb40150 368 PIRSF PIRSF000390 1 368 2.4E-110 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase RAM_01055 1ca10ae3fa4cd902c63469225eb40150 368 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 12 363 2.0E-119 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase RAM_01055 1ca10ae3fa4cd902c63469225eb40150 368 Gene3D G3DSA:3.90.1150.10 237 367 8.1E-34 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_01055 1ca10ae3fa4cd902c63469225eb40150 368 Gene3D G3DSA:3.40.640.10 7 236 1.2E-88 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_24255 96355eeffadfcf3539cb12b1b26cad46 281 SUPERFAMILY SSF51735 1 181 1.43E-45 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_24255 96355eeffadfcf3539cb12b1b26cad46 281 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 5 179 4.1E-51 T 13-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RAM_24255 96355eeffadfcf3539cb12b1b26cad46 281 Gene3D G3DSA:1.10.1040.10 182 281 3.3E-28 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RAM_24255 96355eeffadfcf3539cb12b1b26cad46 281 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 182 278 2.3E-29 T 13-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RAM_24255 96355eeffadfcf3539cb12b1b26cad46 281 Gene3D G3DSA:3.40.50.720 1 180 9.9E-54 T 13-10-2018 RAM_24255 96355eeffadfcf3539cb12b1b26cad46 281 SUPERFAMILY SSF48179 181 279 3.83E-29 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RAM_24255 96355eeffadfcf3539cb12b1b26cad46 281 PIRSF PIRSF000105 1 281 1.4E-80 T 13-10-2018 IPR022694 3-hydroxyacyl-CoA dehydrogenase GO:0003857|GO:0006631|GO:0055114|GO:0070403 RAM_10650 c48866abfae1bd8a6de77fa2db243d79 454 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 1 301 2.8E-45 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAM_10650 c48866abfae1bd8a6de77fa2db243d79 454 SUPERFAMILY SSF55424 339 451 1.12E-20 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RAM_10650 c48866abfae1bd8a6de77fa2db243d79 454 PIRSF PIRSF000350 1 448 3.8E-50 T 13-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 RAM_10650 c48866abfae1bd8a6de77fa2db243d79 454 Gene3D G3DSA:3.30.390.30 342 453 8.0E-20 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RAM_10650 c48866abfae1bd8a6de77fa2db243d79 454 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 124 142 1.4E-13 T 13-10-2018 RAM_10650 c48866abfae1bd8a6de77fa2db243d79 454 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 247 263 1.4E-13 T 13-10-2018 RAM_10650 c48866abfae1bd8a6de77fa2db243d79 454 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 163 181 1.4E-13 T 13-10-2018 RAM_10650 c48866abfae1bd8a6de77fa2db243d79 454 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 275 297 1.4E-13 T 13-10-2018 RAM_10650 c48866abfae1bd8a6de77fa2db243d79 454 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 290 297 1.8E-41 T 13-10-2018 RAM_10650 c48866abfae1bd8a6de77fa2db243d79 454 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 127 136 1.8E-41 T 13-10-2018 RAM_10650 c48866abfae1bd8a6de77fa2db243d79 454 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 163 188 1.8E-41 T 13-10-2018 RAM_10650 c48866abfae1bd8a6de77fa2db243d79 454 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 401 416 1.8E-41 T 13-10-2018 RAM_10650 c48866abfae1bd8a6de77fa2db243d79 454 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 248 262 1.8E-41 T 13-10-2018 RAM_10650 c48866abfae1bd8a6de77fa2db243d79 454 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 339 360 1.8E-41 T 13-10-2018 RAM_10650 c48866abfae1bd8a6de77fa2db243d79 454 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 31 46 1.8E-41 T 13-10-2018 RAM_10650 c48866abfae1bd8a6de77fa2db243d79 454 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 343 445 4.2E-14 T 13-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RAM_10650 c48866abfae1bd8a6de77fa2db243d79 454 SUPERFAMILY SSF51905 1 323 9.91E-40 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_10650 c48866abfae1bd8a6de77fa2db243d79 454 Gene3D G3DSA:3.50.50.60 143 261 2.7E-76 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_10650 c48866abfae1bd8a6de77fa2db243d79 454 Gene3D G3DSA:3.50.50.60 1 315 2.7E-76 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_33115 0d6183e3b6c6263ca2437fbd97f121b0 140 SUPERFAMILY SSF47090 38 107 9.81E-9 T 13-10-2018 IPR036365 PGBD-like superfamily RAM_33115 0d6183e3b6c6263ca2437fbd97f121b0 140 Pfam PF01471 Putative peptidoglycan binding domain 64 98 3.6E-6 T 13-10-2018 IPR002477 Peptidoglycan binding-like RAM_33115 0d6183e3b6c6263ca2437fbd97f121b0 140 Gene3D G3DSA:1.10.101.10 30 111 3.9E-12 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 RAM_00010 014b741a9312e34d350e747f968ead7a 377 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 250 359 1.9E-32 T 13-10-2018 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 RAM_00010 014b741a9312e34d350e747f968ead7a 377 SUPERFAMILY SSF55979 1 122 1.04E-21 T 13-10-2018 RAM_00010 014b741a9312e34d350e747f968ead7a 377 Gene3D G3DSA:3.10.150.10 128 252 4.7E-32 T 13-10-2018 RAM_00010 014b741a9312e34d350e747f968ead7a 377 Pfam PF02767 DNA polymerase III beta subunit, central domain 131 247 5.6E-30 T 13-10-2018 IPR022637 DNA polymerase III, beta sliding clamp, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 RAM_00010 014b741a9312e34d350e747f968ead7a 377 PIRSF PIRSF000804 1 376 1.8E-98 T 13-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 RAM_00010 014b741a9312e34d350e747f968ead7a 377 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 1 375 1.3E-96 T 13-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 RAM_00010 014b741a9312e34d350e747f968ead7a 377 SMART SM00480 17 371 1.2E-117 T 13-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 RAM_00010 014b741a9312e34d350e747f968ead7a 377 SUPERFAMILY SSF55979 250 375 1.23E-31 T 13-10-2018 RAM_00010 014b741a9312e34d350e747f968ead7a 377 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 1 122 3.2E-32 T 13-10-2018 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 RAM_00010 014b741a9312e34d350e747f968ead7a 377 Gene3D G3DSA:3.10.150.10 1 125 1.3E-42 T 13-10-2018 RAM_00010 014b741a9312e34d350e747f968ead7a 377 SUPERFAMILY SSF55979 133 249 2.22E-20 T 13-10-2018 RAM_00010 014b741a9312e34d350e747f968ead7a 377 Gene3D G3DSA:3.10.150.10 253 377 2.8E-44 T 13-10-2018 RAM_43660 09e18741051fbe733782d63737508cba 249 Pfam PF02567 Phenazine biosynthesis-like protein 6 245 5.6E-55 T 13-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 RAM_43660 09e18741051fbe733782d63737508cba 249 Gene3D G3DSA:3.10.310.10 3 241 5.2E-80 T 13-10-2018 RAM_43660 09e18741051fbe733782d63737508cba 249 PIRSF PIRSF016184 1 249 2.5E-45 T 13-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 RAM_43660 09e18741051fbe733782d63737508cba 249 Gene3D G3DSA:3.10.310.10 109 237 5.2E-80 T 13-10-2018 RAM_43660 09e18741051fbe733782d63737508cba 249 SUPERFAMILY SSF54506 1 248 1.28E-69 T 13-10-2018 RAM_43660 09e18741051fbe733782d63737508cba 249 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 3 88 1.8E-22 T 13-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 RAM_35265 84fa3d4863a808d48096edb7e79bf43d 331 Pfam PF08012 Protein of unknown function (DUF1702) 5 322 9.8E-136 T 13-10-2018 IPR012964 Protein of unknown function DUF1702 RAM_20935 9f5afb81327f623a5c9d996a53eef6bb 152 Gene3D G3DSA:3.40.430.10 1 152 2.3E-49 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RAM_20935 9f5afb81327f623a5c9d996a53eef6bb 152 Pfam PF00186 Dihydrofolate reductase 2 128 1.3E-45 T 13-10-2018 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0046654|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 RAM_20935 9f5afb81327f623a5c9d996a53eef6bb 152 SUPERFAMILY SSF53597 2 151 1.54E-47 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RAM_20935 9f5afb81327f623a5c9d996a53eef6bb 152 ProSitePatterns PS00075 Dihydrofolate reductase (DHFR) domain signature. 13 35 - T 13-10-2018 IPR017925 Dihydrofolate reductase conserved site GO:0004146|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-1474151|Reactome: R-HSA-196757|Reactome: R-HSA-539107 RAM_20935 9f5afb81327f623a5c9d996a53eef6bb 152 PIRSF PIRSF000194 1 149 3.4E-48 T 13-10-2018 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0046654|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614 RAM_20935 9f5afb81327f623a5c9d996a53eef6bb 152 PRINTS PR00070 Dihydrofolate reductase signature 40 51 2.3E-16 T 13-10-2018 RAM_20935 9f5afb81327f623a5c9d996a53eef6bb 152 PRINTS PR00070 Dihydrofolate reductase signature 27 35 2.3E-16 T 13-10-2018 RAM_20935 9f5afb81327f623a5c9d996a53eef6bb 152 PRINTS PR00070 Dihydrofolate reductase signature 89 103 2.3E-16 T 13-10-2018 RAM_20935 9f5afb81327f623a5c9d996a53eef6bb 152 PRINTS PR00070 Dihydrofolate reductase signature 13 23 2.3E-16 T 13-10-2018 RAM_37010 9cd7d3fbabf72b0d96ca849bd088d700 335 SUPERFAMILY SSF52096 152 331 9.75E-47 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_37010 9cd7d3fbabf72b0d96ca849bd088d700 335 Gene3D G3DSA:3.90.226.10 147 335 3.1E-50 T 13-10-2018 RAM_37010 9cd7d3fbabf72b0d96ca849bd088d700 335 Pfam PF00378 Enoyl-CoA hydratase/isomerase 161 332 2.4E-27 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RAM_02805 d81f49f8e64e51371d2146c0e83d6d17 436 PIRSF PIRSF500135 1 436 2.1E-205 T 13-10-2018 IPR028358 GDP-mannose 6-dehydrogenase GO:0042121|GO:0047919 KEGG: 00051+1.1.1.132|KEGG: 00520+1.1.1.132|MetaCyc: PWY-6073|MetaCyc: PWY-6082 RAM_02805 d81f49f8e64e51371d2146c0e83d6d17 436 PIRSF PIRSF000124 1 436 3.5E-128 T 13-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 RAM_02805 d81f49f8e64e51371d2146c0e83d6d17 436 SUPERFAMILY SSF48179 205 298 3.74E-25 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RAM_02805 d81f49f8e64e51371d2146c0e83d6d17 436 Gene3D G3DSA:3.40.50.720 235 436 1.2E-59 T 13-10-2018 RAM_02805 d81f49f8e64e51371d2146c0e83d6d17 436 SUPERFAMILY SSF52413 307 421 6.54E-20 T 13-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 RAM_02805 d81f49f8e64e51371d2146c0e83d6d17 436 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 2 402 2.4E-117 T 13-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 RAM_02805 d81f49f8e64e51371d2146c0e83d6d17 436 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 318 402 2.1E-11 T 13-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 RAM_02805 d81f49f8e64e51371d2146c0e83d6d17 436 SUPERFAMILY SSF51735 2 196 1.58E-47 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_02805 d81f49f8e64e51371d2146c0e83d6d17 436 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 2 188 9.8E-54 T 13-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 RAM_02805 d81f49f8e64e51371d2146c0e83d6d17 436 Gene3D G3DSA:1.20.5.170 203 234 5.5E-13 T 13-10-2018 RAM_02805 d81f49f8e64e51371d2146c0e83d6d17 436 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 206 298 4.5E-27 T 13-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 RAM_02805 d81f49f8e64e51371d2146c0e83d6d17 436 SMART SM00984 317 422 1.9E-17 T 13-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 RAM_02805 d81f49f8e64e51371d2146c0e83d6d17 436 Gene3D G3DSA:3.40.50.720 1 196 1.9E-62 T 13-10-2018 RAM_03960 a0845e13c3276bec7a0185642e84532c 570 Pfam PF05199 GMC oxidoreductase 468 525 6.5E-13 T 13-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 RAM_03960 a0845e13c3276bec7a0185642e84532c 570 SUPERFAMILY SSF51905 11 529 1.62E-50 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_03960 a0845e13c3276bec7a0185642e84532c 570 Gene3D G3DSA:3.50.50.60 441 529 4.4E-19 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_03960 a0845e13c3276bec7a0185642e84532c 570 Gene3D G3DSA:3.50.50.60 188 335 3.6E-28 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_03960 a0845e13c3276bec7a0185642e84532c 570 Pfam PF00732 GMC oxidoreductase 15 283 2.5E-12 T 13-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 RAM_03960 a0845e13c3276bec7a0185642e84532c 570 Gene3D G3DSA:3.50.50.60 13 164 8.5E-27 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_42555 14f25c02b3e93934558330ed91e32b1f 365 SMART SM00387 240 353 1.2E-21 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_42555 14f25c02b3e93934558330ed91e32b1f 365 Pfam PF00672 HAMP domain 81 129 1.5E-8 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_42555 14f25c02b3e93934558330ed91e32b1f 365 PRINTS PR00344 Bacterial sensor protein C-terminal signature 337 350 1.2E-7 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_42555 14f25c02b3e93934558330ed91e32b1f 365 PRINTS PR00344 Bacterial sensor protein C-terminal signature 278 292 1.2E-7 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_42555 14f25c02b3e93934558330ed91e32b1f 365 PRINTS PR00344 Bacterial sensor protein C-terminal signature 313 331 1.2E-7 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_42555 14f25c02b3e93934558330ed91e32b1f 365 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 244 351 7.8E-14 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_42555 14f25c02b3e93934558330ed91e32b1f 365 SUPERFAMILY SSF47384 117 197 5.89E-12 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RAM_42555 14f25c02b3e93934558330ed91e32b1f 365 Pfam PF00512 His Kinase A (phospho-acceptor) domain 135 197 1.0E-6 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_42555 14f25c02b3e93934558330ed91e32b1f 365 SMART SM00304 80 133 3.3E-10 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_42555 14f25c02b3e93934558330ed91e32b1f 365 SUPERFAMILY SSF158472 82 130 3.14E-8 T 13-10-2018 RAM_42555 14f25c02b3e93934558330ed91e32b1f 365 Gene3D G3DSA:3.30.565.10 201 356 6.3E-28 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_42555 14f25c02b3e93934558330ed91e32b1f 365 Gene3D G3DSA:1.10.287.130 84 199 2.6E-23 T 13-10-2018 RAM_42555 14f25c02b3e93934558330ed91e32b1f 365 SUPERFAMILY SSF55874 201 351 4.58E-29 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_42555 14f25c02b3e93934558330ed91e32b1f 365 SMART SM00388 134 198 1.1E-5 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_03370 ed93efe72153f29bb8a866f1442e96ff 166 Gene3D G3DSA:1.10.10.10 2 60 1.5E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_03370 ed93efe72153f29bb8a866f1442e96ff 166 SUPERFAMILY SSF54909 71 144 3.89E-12 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_03370 ed93efe72153f29bb8a866f1442e96ff 166 Gene3D G3DSA:3.30.70.920 61 146 6.0E-17 T 13-10-2018 RAM_03370 ed93efe72153f29bb8a866f1442e96ff 166 SMART SM00344 9 115 2.5E-31 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RAM_03370 ed93efe72153f29bb8a866f1442e96ff 166 Pfam PF13404 AsnC-type helix-turn-helix domain 9 50 6.8E-18 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_03370 ed93efe72153f29bb8a866f1442e96ff 166 Pfam PF01037 Lrp/AsnC ligand binding domain 92 142 6.7E-11 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RAM_03370 ed93efe72153f29bb8a866f1442e96ff 166 ProSitePatterns PS00519 AsnC-type HTH domain signature. 27 53 - T 13-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site RAM_03370 ed93efe72153f29bb8a866f1442e96ff 166 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 36 55 1.7E-15 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_03370 ed93efe72153f29bb8a866f1442e96ff 166 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 25 36 1.7E-15 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_03370 ed93efe72153f29bb8a866f1442e96ff 166 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 9 25 1.7E-15 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_03370 ed93efe72153f29bb8a866f1442e96ff 166 SUPERFAMILY SSF46785 8 68 3.81E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_09790 29fb23ac9436d1e6299ebae6f836d49a 439 Gene3D G3DSA:3.20.20.140 1 426 9.4E-134 T 13-10-2018 RAM_09790 29fb23ac9436d1e6299ebae6f836d49a 439 Pfam PF01979 Amidohydrolase family 48 392 7.2E-32 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RAM_09790 29fb23ac9436d1e6299ebae6f836d49a 439 SUPERFAMILY SSF51338 2 427 1.83E-18 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_09790 29fb23ac9436d1e6299ebae6f836d49a 439 SUPERFAMILY SSF51556 52 370 1.4E-95 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_09790 29fb23ac9436d1e6299ebae6f836d49a 439 TIGRFAM TIGR03178 allantoinase: allantoinase 1 429 1.0E-168 T 13-10-2018 IPR017593 Allantoinase GO:0000256|GO:0004038|GO:0008270|GO:0050897 KEGG: 00230+3.5.2.5|MetaCyc: PWY-5697|MetaCyc: PWY-5698 RAM_15595 67efbbee7b610e392c86d9082fdbc4a2 518 Gene3D G3DSA:2.80.10.50 359 518 8.7E-61 T 13-10-2018 RAM_15595 67efbbee7b610e392c86d9082fdbc4a2 518 SUPERFAMILY SSF49899 40 357 1.31E-152 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily RAM_15595 67efbbee7b610e392c86d9082fdbc4a2 518 Pfam PF09206 Alpha-L-arabinofuranosidase B, catalytic 41 355 4.9E-154 T 13-10-2018 IPR015289 Alpha-L-arabinofuranosidase B, catalytic GO:0031221|GO:0046556 KEGG: 00520+3.2.1.55 RAM_15595 67efbbee7b610e392c86d9082fdbc4a2 518 SUPERFAMILY SSF110221 361 517 3.14E-49 T 13-10-2018 IPR036195 Alpha-L-arabinofuranosidase B, arabinose-binding domain superfamily GO:0046373|GO:0046556 RAM_15595 67efbbee7b610e392c86d9082fdbc4a2 518 Pfam PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain 371 512 4.2E-52 T 13-10-2018 IPR007934 Alpha-L-arabinofuranosidase B, arabinose-binding domain GO:0046373|GO:0046556 RAM_15595 67efbbee7b610e392c86d9082fdbc4a2 518 Gene3D G3DSA:2.60.120.200 39 358 1.9E-160 T 13-10-2018 RAM_39435 620b777745738c789a675cdb0466dc4c 155 Pfam PF00293 NUDIX domain 6 148 3.1E-18 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RAM_39435 620b777745738c789a675cdb0466dc4c 155 SUPERFAMILY SSF55811 6 151 3.79E-22 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RAM_39435 620b777745738c789a675cdb0466dc4c 155 Gene3D G3DSA:3.90.79.10 3 153 8.9E-23 T 13-10-2018 RAM_39435 620b777745738c789a675cdb0466dc4c 155 ProSitePatterns PS00893 Nudix box signature. 44 65 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RAM_39435 620b777745738c789a675cdb0466dc4c 155 PRINTS PR00502 NUDIX hydrolase family signature 53 68 6.5E-6 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RAM_39435 620b777745738c789a675cdb0466dc4c 155 PRINTS PR00502 NUDIX hydrolase family signature 39 53 6.5E-6 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RAM_29005 150b4c9732cbed3026e30c3a88f12316 207 Gene3D G3DSA:1.10.357.10 51 186 4.1E-25 T 13-10-2018 RAM_29005 150b4c9732cbed3026e30c3a88f12316 207 SUPERFAMILY SSF48498 78 184 1.11E-16 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_29005 150b4c9732cbed3026e30c3a88f12316 207 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 56 1.4E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_29005 150b4c9732cbed3026e30c3a88f12316 207 SUPERFAMILY SSF46689 3 73 2.24E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_29005 150b4c9732cbed3026e30c3a88f12316 207 Gene3D G3DSA:1.10.10.60 1 48 3.2E-19 T 13-10-2018 RAM_12670 777aabfdfa51ad8588ebd0716ed3cc64 150 SUPERFAMILY SSF103196 9 133 1.06E-32 T 13-10-2018 RAM_12670 777aabfdfa51ad8588ebd0716ed3cc64 150 Pfam PF03259 Roadblock/LC7 domain 16 105 1.0E-20 T 13-10-2018 IPR004942 Roadblock/LAMTOR2 domain RAM_12670 777aabfdfa51ad8588ebd0716ed3cc64 150 Gene3D G3DSA:3.30.450.30 11 136 1.3E-41 T 13-10-2018 RAM_12670 777aabfdfa51ad8588ebd0716ed3cc64 150 SMART SM00960 15 105 9.8E-29 T 13-10-2018 IPR004942 Roadblock/LAMTOR2 domain RAM_45580 56d62ffc3cc8e3c302357c0f75bc0f17 191 SUPERFAMILY SSF55469 4 189 4.19E-37 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RAM_45580 56d62ffc3cc8e3c302357c0f75bc0f17 191 Gene3D G3DSA:3.40.109.10 2 190 5.1E-41 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RAM_45580 56d62ffc3cc8e3c302357c0f75bc0f17 191 Pfam PF00881 Nitroreductase family 71 151 5.5E-6 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 RAM_45580 56d62ffc3cc8e3c302357c0f75bc0f17 191 Pfam PF00881 Nitroreductase family 11 53 1.3E-9 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 RAM_20825 90803f244b8db92313c73e3e79ff9f60 448 Gene3D G3DSA:3.40.190.10 159 428 6.3E-127 T 13-10-2018 RAM_20825 90803f244b8db92313c73e3e79ff9f60 448 Gene3D G3DSA:3.40.190.10 63 367 6.3E-127 T 13-10-2018 RAM_20825 90803f244b8db92313c73e3e79ff9f60 448 Pfam PF01547 Bacterial extracellular solute-binding protein 58 345 2.0E-29 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein RAM_20825 90803f244b8db92313c73e3e79ff9f60 448 SUPERFAMILY SSF53850 48 431 9.72E-63 T 13-10-2018 RAM_34005 ae057389e314654a72f00c09e58836d4 250 Gene3D G3DSA:3.40.1280.10 79 250 1.8E-51 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RAM_34005 ae057389e314654a72f00c09e58836d4 250 Gene3D G3DSA:2.40.240.20 4 75 5.3E-18 T 13-10-2018 RAM_34005 ae057389e314654a72f00c09e58836d4 250 Pfam PF04452 RNA methyltransferase 21 243 5.6E-55 T 13-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 RAM_34005 ae057389e314654a72f00c09e58836d4 250 SUPERFAMILY SSF75217 79 249 1.62E-41 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases RAM_34005 ae057389e314654a72f00c09e58836d4 250 PIRSF PIRSF015601 7 249 2.9E-49 T 13-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 RAM_34005 ae057389e314654a72f00c09e58836d4 250 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 20 245 4.9E-36 T 13-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 RAM_34005 ae057389e314654a72f00c09e58836d4 250 SUPERFAMILY SSF88697 8 63 2.09E-9 T 13-10-2018 IPR015947 PUA-like superfamily RAM_12360 36aab6d1bc59ed188a25e9feff03d4f1 346 Pfam PF02470 MlaD protein 42 115 6.3E-16 T 13-10-2018 IPR003399 Mce/MlaD RAM_12360 36aab6d1bc59ed188a25e9feff03d4f1 346 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 249 268 3.3E-8 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_12360 36aab6d1bc59ed188a25e9feff03d4f1 346 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 180 198 3.3E-8 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_12360 36aab6d1bc59ed188a25e9feff03d4f1 346 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 93 109 3.3E-8 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_12360 36aab6d1bc59ed188a25e9feff03d4f1 346 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 300 319 3.3E-8 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_12360 36aab6d1bc59ed188a25e9feff03d4f1 346 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 131 155 3.3E-8 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_12360 36aab6d1bc59ed188a25e9feff03d4f1 346 Pfam PF11887 Cholesterol uptake porter CUP1 of Mce4, putative 146 304 2.8E-7 T 13-10-2018 IPR024516 Mammalian cell entry, C-terminal RAM_12360 36aab6d1bc59ed188a25e9feff03d4f1 346 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 15 294 8.7E-60 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_12615 e52198da18f24aa0c4df6c1930613612 268 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 108 128 - T 13-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 RAM_12615 e52198da18f24aa0c4df6c1930613612 268 Pfam PF00378 Enoyl-CoA hydratase/isomerase 21 230 3.4E-43 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RAM_12615 e52198da18f24aa0c4df6c1930613612 268 Gene3D G3DSA:3.90.226.10 6 209 2.0E-79 T 13-10-2018 RAM_12615 e52198da18f24aa0c4df6c1930613612 268 SUPERFAMILY SSF52096 14 261 2.05E-69 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_39705 2af49d4a66c73987461f9bc48ff3ddc3 409 Gene3D G3DSA:3.30.70.260 95 181 6.1E-29 T 13-10-2018 RAM_39705 2af49d4a66c73987461f9bc48ff3ddc3 409 TIGRFAM TIGR00338 serB: phosphoserine phosphatase SerB 171 388 6.0E-76 T 13-10-2018 RAM_39705 2af49d4a66c73987461f9bc48ff3ddc3 409 Pfam PF12710 haloacid dehalogenase-like hydrolase 186 353 1.2E-27 T 13-10-2018 RAM_39705 2af49d4a66c73987461f9bc48ff3ddc3 409 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 185 355 6.6E-33 T 13-10-2018 RAM_39705 2af49d4a66c73987461f9bc48ff3ddc3 409 SUPERFAMILY SSF56784 183 391 3.74E-51 T 13-10-2018 IPR036412 HAD-like superfamily RAM_39705 2af49d4a66c73987461f9bc48ff3ddc3 409 SUPERFAMILY SSF55021 4 77 3.09E-6 T 13-10-2018 RAM_39705 2af49d4a66c73987461f9bc48ff3ddc3 409 Pfam PF13740 ACT domain 6 78 9.7E-18 T 13-10-2018 RAM_39705 2af49d4a66c73987461f9bc48ff3ddc3 409 Gene3D G3DSA:1.10.150.210 195 255 2.4E-72 T 13-10-2018 IPR023190 Phosphoserine phosphatase, domain 2 GO:0004647|GO:0006564 KEGG: 00260+3.1.3.3|KEGG: 00680+3.1.3.3|Reactome: R-HSA-977347 RAM_39705 2af49d4a66c73987461f9bc48ff3ddc3 409 Gene3D G3DSA:3.30.70.260 3 82 1.6E-11 T 13-10-2018 RAM_39705 2af49d4a66c73987461f9bc48ff3ddc3 409 Gene3D G3DSA:3.40.50.1000 184 375 2.4E-72 T 13-10-2018 IPR023214 HAD superfamily RAM_27765 7eeca0599ce95d6471d169de3af0894b 317 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 6 122 7.7E-19 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 RAM_27765 7eeca0599ce95d6471d169de3af0894b 317 SUPERFAMILY SSF51735 5 154 7.49E-39 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_27765 7eeca0599ce95d6471d169de3af0894b 317 Gene3D G3DSA:3.30.360.10 128 317 1.4E-30 T 13-10-2018 RAM_27765 7eeca0599ce95d6471d169de3af0894b 317 SUPERFAMILY SSF55347 128 289 4.25E-27 T 13-10-2018 RAM_27765 7eeca0599ce95d6471d169de3af0894b 317 Gene3D G3DSA:3.40.50.720 6 127 1.2E-31 T 13-10-2018 RAM_39955 48e101b905cdb2399566f44d87157ce5 274 Hamap MF_01416 ATP synthase subunit delta [atpD]. 97 273 14.223 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RAM_39955 48e101b905cdb2399566f44d87157ce5 274 ProSitePatterns PS00389 ATP synthase delta (OSCP) subunit signature. 233 252 - T 13-10-2018 IPR020781 ATPase, OSCP/delta subunit, conserved site GO:0015986|GO:0016020|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RAM_39955 48e101b905cdb2399566f44d87157ce5 274 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 107 271 1.2E-24 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RAM_39955 48e101b905cdb2399566f44d87157ce5 274 PRINTS PR00125 ATP synthase delta subunit signature 246 264 6.4E-10 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RAM_39955 48e101b905cdb2399566f44d87157ce5 274 PRINTS PR00125 ATP synthase delta subunit signature 231 246 6.4E-10 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RAM_39955 48e101b905cdb2399566f44d87157ce5 274 PRINTS PR00125 ATP synthase delta subunit signature 101 120 6.4E-10 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RAM_39955 48e101b905cdb2399566f44d87157ce5 274 Pfam PF00213 ATP synthase delta (OSCP) subunit 108 271 1.1E-35 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RAM_12700 0d823529697466df49a9e209052749d7 1077 Hamap MF_02050 Fused isobutyryl-CoA mutase [icmF]. 11 1077 16.635 T 13-10-2018 IPR033669 Fused isobutyryl-CoA mutase GO:0003924|GO:0005525|GO:0006637|GO:0031419|GO:0034784|GO:0047727 RAM_12700 0d823529697466df49a9e209052749d7 1077 Pfam PF03308 ArgK protein 177 392 1.5E-41 T 13-10-2018 RAM_12700 0d823529697466df49a9e209052749d7 1077 Pfam PF02310 B12 binding domain 13 108 5.8E-11 T 13-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 RAM_12700 0d823529697466df49a9e209052749d7 1077 Gene3D G3DSA:3.20.20.240 540 1073 1.5E-183 T 13-10-2018 RAM_12700 0d823529697466df49a9e209052749d7 1077 SUPERFAMILY SSF52540 144 402 4.09E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_12700 0d823529697466df49a9e209052749d7 1077 TIGRFAM TIGR00641 acid_CoA_mut_N: methylmalonyl-CoA mutase N-terminal domain 709 1076 7.3E-95 T 13-10-2018 IPR006098 Methylmalonyl-CoA mutase, alpha chain, catalytic GO:0004494|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 RAM_12700 0d823529697466df49a9e209052749d7 1077 Gene3D G3DSA:3.40.50.300 187 400 1.9E-57 T 13-10-2018 RAM_12700 0d823529697466df49a9e209052749d7 1077 Pfam PF01642 Methylmalonyl-CoA mutase 554 1071 3.9E-142 T 13-10-2018 IPR006099 Methylmalonyl-CoA mutase, alpha/beta chain, catalytic GO:0016866|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 RAM_12700 0d823529697466df49a9e209052749d7 1077 SUPERFAMILY SSF52242 6 143 2.62E-40 T 13-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 RAM_12700 0d823529697466df49a9e209052749d7 1077 Gene3D G3DSA:3.40.50.280 7 150 2.6E-55 T 13-10-2018 RAM_12700 0d823529697466df49a9e209052749d7 1077 SUPERFAMILY SSF51703 504 1073 1.07E-151 T 13-10-2018 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 RAM_03775 167d07d9c3335ec97829bedfd15c8d7d 362 SMART SM00382 30 213 2.4E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_03775 167d07d9c3335ec97829bedfd15c8d7d 362 Pfam PF00005 ABC transporter 22 163 2.2E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_03775 167d07d9c3335ec97829bedfd15c8d7d 362 Gene3D G3DSA:3.40.50.300 4 223 4.6E-60 T 13-10-2018 RAM_03775 167d07d9c3335ec97829bedfd15c8d7d 362 SUPERFAMILY SSF50331 238 361 3.59E-27 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal RAM_03775 167d07d9c3335ec97829bedfd15c8d7d 362 Pfam PF08402 TOBE domain 277 353 1.9E-8 T 13-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 RAM_03775 167d07d9c3335ec97829bedfd15c8d7d 362 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_03775 167d07d9c3335ec97829bedfd15c8d7d 362 Gene3D G3DSA:2.40.50.940 224 354 1.3E-31 T 13-10-2018 RAM_03775 167d07d9c3335ec97829bedfd15c8d7d 362 SUPERFAMILY SSF52540 6 244 2.16E-82 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_03775 167d07d9c3335ec97829bedfd15c8d7d 362 Gene3D G3DSA:2.40.50.140 284 345 1.3E-31 T 13-10-2018 RAM_09220 126d0ac96e6c91ae4114e3f52976db2b 333 Gene3D G3DSA:3.20.20.70 75 260 2.6E-15 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_09220 126d0ac96e6c91ae4114e3f52976db2b 333 PIRSF PIRSF005963 2 317 4.3E-120 T 13-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 RAM_09220 126d0ac96e6c91ae4114e3f52976db2b 333 Pfam PF04055 Radical SAM superfamily 81 234 2.8E-12 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RAM_09220 126d0ac96e6c91ae4114e3f52976db2b 333 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 24 60 6.0E-8 T 13-10-2018 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 RAM_09220 126d0ac96e6c91ae4114e3f52976db2b 333 SUPERFAMILY SSF102114 35 296 3.27E-61 T 13-10-2018 RAM_09220 126d0ac96e6c91ae4114e3f52976db2b 333 Hamap MF_00206 Lipoyl synthase [lipA]. 1 307 138.999 T 13-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 RAM_09220 126d0ac96e6c91ae4114e3f52976db2b 333 TIGRFAM TIGR00510 lipA: lipoyl synthase 18 302 5.6E-99 T 13-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 RAM_09220 126d0ac96e6c91ae4114e3f52976db2b 333 SMART SM00729 71 277 1.2E-12 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 RAM_25465 a04d39db131887e8f51803968a643e03 101 Gene3D G3DSA:4.10.830.10 40 101 2.4E-23 T 13-10-2018 RAM_25465 a04d39db131887e8f51803968a643e03 101 Pfam PF00253 Ribosomal protein S14p/S29e 48 100 1.6E-24 T 13-10-2018 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_25465 a04d39db131887e8f51803968a643e03 101 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 101 25.304 T 13-10-2018 IPR023036 Ribosomal protein S14, bacterial/plastid RAM_25465 a04d39db131887e8f51803968a643e03 101 SUPERFAMILY SSF57716 2 101 5.23E-31 T 13-10-2018 RAM_13135 b269c8defcd75063b14f876ceb1a96c2 393 Gene3D G3DSA:3.30.420.40 211 372 5.3E-64 T 13-10-2018 RAM_13135 b269c8defcd75063b14f876ceb1a96c2 393 SUPERFAMILY SSF46785 16 80 1.6E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_13135 b269c8defcd75063b14f876ceb1a96c2 393 Gene3D G3DSA:3.30.420.40 96 382 5.3E-64 T 13-10-2018 RAM_13135 b269c8defcd75063b14f876ceb1a96c2 393 Pfam PF00480 ROK family 91 385 3.1E-45 T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 RAM_13135 b269c8defcd75063b14f876ceb1a96c2 393 Gene3D G3DSA:1.10.10.10 6 82 3.6E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_13135 b269c8defcd75063b14f876ceb1a96c2 393 SUPERFAMILY SSF53067 90 389 1.62E-39 T 13-10-2018 RAM_46570 3d6ca65e4050b003c333ad5b706ff129 376 SUPERFAMILY SSF140453 24 110 1.83E-10 T 13-10-2018 IPR036689 ESAT-6-like superfamily RAM_46570 3d6ca65e4050b003c333ad5b706ff129 376 Gene3D G3DSA:1.10.287.1060 18 114 2.9E-12 T 13-10-2018 RAM_46570 3d6ca65e4050b003c333ad5b706ff129 376 SUPERFAMILY SSF53955 259 362 1.49E-17 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily RAM_46570 3d6ca65e4050b003c333ad5b706ff129 376 Pfam PF06013 Proteins of 100 residues with WXG 24 105 7.5E-11 T 13-10-2018 IPR010310 Type VII secretion system ESAT-6-like RAM_46570 3d6ca65e4050b003c333ad5b706ff129 376 Pfam PF01464 Transglycosylase SLT domain 287 360 8.8E-14 T 13-10-2018 IPR008258 Transglycosylase SLT domain 1 RAM_46570 3d6ca65e4050b003c333ad5b706ff129 376 Gene3D G3DSA:1.10.530.10 257 364 3.9E-11 T 13-10-2018 RAM_05110 8066c0ca51adf7e80b49bbda70bde6f0 278 Gene3D G3DSA:3.40.50.720 3 278 2.2E-68 T 13-10-2018 RAM_05110 8066c0ca51adf7e80b49bbda70bde6f0 278 Pfam PF13460 NAD(P)H-binding 7 175 1.9E-19 T 13-10-2018 IPR016040 NAD(P)-binding domain RAM_05110 8066c0ca51adf7e80b49bbda70bde6f0 278 SUPERFAMILY SSF51735 1 272 5.9E-45 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_42205 f5b3aff92074195a13a099631090ce3d 280 SUPERFAMILY SSF47413 12 71 3.44E-6 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_42205 f5b3aff92074195a13a099631090ce3d 280 SMART SM00530 17 72 0.0032 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_35635 818016ae91eb3c8a3f5d84abffaea6bd 563 SUPERFAMILY SSF54373 362 477 1.5E-26 T 13-10-2018 RAM_35635 818016ae91eb3c8a3f5d84abffaea6bd 563 Gene3D G3DSA:3.90.660.10 88 483 6.8E-185 T 13-10-2018 RAM_35635 818016ae91eb3c8a3f5d84abffaea6bd 563 Gene3D G3DSA:3.50.50.60 38 547 6.8E-185 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_35635 818016ae91eb3c8a3f5d84abffaea6bd 563 Gene3D G3DSA:1.10.405.40 129 263 6.8E-185 T 13-10-2018 RAM_35635 818016ae91eb3c8a3f5d84abffaea6bd 563 SUPERFAMILY SSF51905 49 539 3.24E-40 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_35635 818016ae91eb3c8a3f5d84abffaea6bd 563 Pfam PF01593 Flavin containing amine oxidoreductase 59 534 3.8E-46 T 13-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 RAM_21720 632ca4924c33238c31fd637965edc505 449 SUPERFAMILY SSF53720 3 445 4.32E-119 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RAM_21720 632ca4924c33238c31fd637965edc505 449 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 257 268 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 RAM_21720 632ca4924c33238c31fd637965edc505 449 Gene3D G3DSA:3.40.309.10 233 412 6.0E-120 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RAM_21720 632ca4924c33238c31fd637965edc505 449 Gene3D G3DSA:3.40.605.10 5 441 6.0E-120 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RAM_21720 632ca4924c33238c31fd637965edc505 449 Pfam PF00171 Aldehyde dehydrogenase family 4 443 7.4E-110 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RAM_35005 b9092ad54a822b642db5b622da3bb7e6 306 SUPERFAMILY SSF82689 198 292 2.09E-11 T 13-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 RAM_35005 b9092ad54a822b642db5b622da3bb7e6 306 Pfam PF00924 Mechanosensitive ion channel 92 288 2.1E-36 T 13-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 RAM_35005 b9092ad54a822b642db5b622da3bb7e6 306 Gene3D G3DSA:2.30.30.60 149 198 9.3E-19 T 13-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily RAM_35005 b9092ad54a822b642db5b622da3bb7e6 306 Gene3D G3DSA:3.30.70.100 201 288 3.1E-21 T 13-10-2018 RAM_35005 b9092ad54a822b642db5b622da3bb7e6 306 SUPERFAMILY SSF50182 133 190 3.92E-12 T 13-10-2018 IPR010920 LSM domain superfamily RAM_35005 b9092ad54a822b642db5b622da3bb7e6 306 SUPERFAMILY SSF82861 77 132 6.54E-10 T 13-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 RAM_36690 6d309e4c88d3ec3c0e9e0cdce6c7dac2 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 1.2E-14 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36690 6d309e4c88d3ec3c0e9e0cdce6c7dac2 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 1.2E-14 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36690 6d309e4c88d3ec3c0e9e0cdce6c7dac2 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 1.2E-14 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36690 6d309e4c88d3ec3c0e9e0cdce6c7dac2 245 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 185 4.0E-4 T 13-10-2018 RAM_36690 6d309e4c88d3ec3c0e9e0cdce6c7dac2 245 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 241 6.0E-63 T 13-10-2018 RAM_36690 6d309e4c88d3ec3c0e9e0cdce6c7dac2 245 SUPERFAMILY SSF51735 4 244 2.53E-84 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_36690 6d309e4c88d3ec3c0e9e0cdce6c7dac2 245 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_36690 6d309e4c88d3ec3c0e9e0cdce6c7dac2 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 206 226 6.6E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36690 6d309e4c88d3ec3c0e9e0cdce6c7dac2 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 6.6E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36690 6d309e4c88d3ec3c0e9e0cdce6c7dac2 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 6.6E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36690 6d309e4c88d3ec3c0e9e0cdce6c7dac2 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 6.6E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36690 6d309e4c88d3ec3c0e9e0cdce6c7dac2 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 6.6E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36690 6d309e4c88d3ec3c0e9e0cdce6c7dac2 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 6.6E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36690 6d309e4c88d3ec3c0e9e0cdce6c7dac2 245 Gene3D G3DSA:3.40.50.720 1 244 9.1E-89 T 13-10-2018 RAM_15710 461e12d43280c66276711a31adf20d79 355 SUPERFAMILY SSF53822 39 303 1.52E-58 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_15710 461e12d43280c66276711a31adf20d79 355 Gene3D G3DSA:3.40.50.2300 138 352 9.2E-61 T 13-10-2018 RAM_15710 461e12d43280c66276711a31adf20d79 355 Pfam PF13407 Periplasmic binding protein domain 41 299 2.3E-50 T 13-10-2018 IPR025997 Periplasmic binding protein RAM_15710 461e12d43280c66276711a31adf20d79 355 Gene3D G3DSA:3.40.50.2300 49 324 9.2E-61 T 13-10-2018 RAM_11155 d33f1d409c30b318d409a6899172191d 322 Gene3D G3DSA:3.40.1190.20 1 316 1.3E-80 T 13-10-2018 IPR029056 Ribokinase-like RAM_11155 d33f1d409c30b318d409a6899172191d 322 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 43 67 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RAM_11155 d33f1d409c30b318d409a6899172191d 322 Pfam PF00294 pfkB family carbohydrate kinase 26 291 8.8E-42 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB RAM_11155 d33f1d409c30b318d409a6899172191d 322 SUPERFAMILY SSF53613 2 297 5.92E-51 T 13-10-2018 IPR029056 Ribokinase-like RAM_37805 42125804d6f519be17b64ba32ebe8ef9 205 Pfam PF00440 Bacterial regulatory proteins, tetR family 21 66 2.3E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_37805 42125804d6f519be17b64ba32ebe8ef9 205 SUPERFAMILY SSF46689 14 89 6.14E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_37805 42125804d6f519be17b64ba32ebe8ef9 205 Gene3D G3DSA:1.10.10.60 6 64 3.8E-14 T 13-10-2018 RAM_37805 42125804d6f519be17b64ba32ebe8ef9 205 SUPERFAMILY SSF48498 92 201 1.31E-14 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_37805 42125804d6f519be17b64ba32ebe8ef9 205 Gene3D G3DSA:1.10.357.10 65 203 2.1E-21 T 13-10-2018 RAM_30420 9cda7a827cd674ac9b504cf9a59aeaac 141 Pfam PF04075 F420H(2)-dependent quinone reductase 20 135 6.1E-29 T 13-10-2018 IPR004378 F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 RAM_30420 9cda7a827cd674ac9b504cf9a59aeaac 141 TIGRFAM TIGR00026 hi_GC_TIGR00026: deazaflavin-dependent oxidoreductase, nitroreductase family 29 137 6.4E-24 T 13-10-2018 IPR004378 F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 RAM_30420 9cda7a827cd674ac9b504cf9a59aeaac 141 SUPERFAMILY SSF50475 27 101 1.29E-7 T 13-10-2018 RAM_30420 9cda7a827cd674ac9b504cf9a59aeaac 141 Gene3D G3DSA:2.30.110.10 3 139 3.7E-39 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_18255 7d208d6bb4618673b9bada4d8bbcd3e0 499 Pfam PF00989 PAS fold 302 410 3.1E-5 T 13-10-2018 IPR013767 PAS fold GO:0006355 RAM_18255 7d208d6bb4618673b9bada4d8bbcd3e0 499 Gene3D G3DSA:3.30.450.20 299 427 4.7E-10 T 13-10-2018 RAM_18255 7d208d6bb4618673b9bada4d8bbcd3e0 499 SUPERFAMILY SSF53335 75 269 1.56E-47 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_18255 7d208d6bb4618673b9bada4d8bbcd3e0 499 SUPERFAMILY SSF47757 6 77 1.83E-13 T 13-10-2018 RAM_18255 7d208d6bb4618673b9bada4d8bbcd3e0 499 Pfam PF01739 CheR methyltransferase, SAM binding domain 75 265 2.2E-52 T 13-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal RAM_18255 7d208d6bb4618673b9bada4d8bbcd3e0 499 SMART SM00138 9 270 6.5E-78 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RAM_18255 7d208d6bb4618673b9bada4d8bbcd3e0 499 Gene3D G3DSA:3.40.50.150 74 272 6.7E-60 T 13-10-2018 RAM_18255 7d208d6bb4618673b9bada4d8bbcd3e0 499 Pfam PF03705 CheR methyltransferase, all-alpha domain 11 61 1.0E-15 T 13-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal RAM_18255 7d208d6bb4618673b9bada4d8bbcd3e0 499 SUPERFAMILY SSF55785 301 411 5.86E-8 T 13-10-2018 IPR035965 PAS domain superfamily RAM_18255 7d208d6bb4618673b9bada4d8bbcd3e0 499 PRINTS PR00996 Glutamate methyltransferase family signature 31 44 3.2E-30 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RAM_18255 7d208d6bb4618673b9bada4d8bbcd3e0 499 PRINTS PR00996 Glutamate methyltransferase family signature 144 160 3.2E-30 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RAM_18255 7d208d6bb4618673b9bada4d8bbcd3e0 499 PRINTS PR00996 Glutamate methyltransferase family signature 210 224 3.2E-30 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RAM_18255 7d208d6bb4618673b9bada4d8bbcd3e0 499 PRINTS PR00996 Glutamate methyltransferase family signature 229 252 3.2E-30 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RAM_18255 7d208d6bb4618673b9bada4d8bbcd3e0 499 PRINTS PR00996 Glutamate methyltransferase family signature 68 80 3.2E-30 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RAM_18255 7d208d6bb4618673b9bada4d8bbcd3e0 499 PRINTS PR00996 Glutamate methyltransferase family signature 108 128 3.2E-30 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RAM_05455 9146f30be371945d29d6ed6ff96bf359 425 Pfam PF03448 MgtE intracellular N domain 180 281 4.3E-22 T 13-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain RAM_05455 9146f30be371945d29d6ed6ff96bf359 425 Gene3D G3DSA:1.25.60.10 168 278 1.8E-23 T 13-10-2018 IPR038076 MgtE, N-terminal domain superfamily RAM_05455 9146f30be371945d29d6ed6ff96bf359 425 Gene3D G3DSA:3.10.580.10 279 410 4.6E-27 T 13-10-2018 RAM_05455 9146f30be371945d29d6ed6ff96bf359 425 SUPERFAMILY SSF50346 10 89 2.04E-11 T 13-10-2018 IPR011033 PRC-barrel-like superfamily RAM_05455 9146f30be371945d29d6ed6ff96bf359 425 Pfam PF00571 CBS domain 284 345 7.3E-5 T 13-10-2018 IPR000644 CBS domain RAM_05455 9146f30be371945d29d6ed6ff96bf359 425 Pfam PF00571 CBS domain 360 407 0.0018 T 13-10-2018 IPR000644 CBS domain RAM_05455 9146f30be371945d29d6ed6ff96bf359 425 SUPERFAMILY SSF54631 282 414 9.73E-25 T 13-10-2018 RAM_05455 9146f30be371945d29d6ed6ff96bf359 425 SMART SM00924 180 283 4.7E-28 T 13-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain RAM_05455 9146f30be371945d29d6ed6ff96bf359 425 SUPERFAMILY SSF158791 170 279 6.02E-26 T 13-10-2018 RAM_05455 9146f30be371945d29d6ed6ff96bf359 425 Pfam PF05239 PRC-barrel domain 7 67 2.9E-5 T 13-10-2018 IPR027275 PRC-barrel domain RAM_38405 d95013a3c2ebf8dabd0124725b9d9a41 143 Gene3D G3DSA:3.30.300.20 47 142 3.2E-31 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta RAM_38405 d95013a3c2ebf8dabd0124725b9d9a41 143 Gene3D G3DSA:2.20.25.10 1 46 3.9E-13 T 13-10-2018 RAM_38405 d95013a3c2ebf8dabd0124725b9d9a41 143 SUPERFAMILY SSF82784 1 140 1.96E-39 T 13-10-2018 IPR036102 OsmC/Ohr superfamily RAM_38405 d95013a3c2ebf8dabd0124725b9d9a41 143 TIGRFAM TIGR03561 organ_hyd_perox: peroxiredoxin, Ohr subfamily 6 139 6.9E-48 T 13-10-2018 IPR019953 Organic hydroperoxide resistance protein famiy GO:0006979 RAM_38405 d95013a3c2ebf8dabd0124725b9d9a41 143 Pfam PF02566 OsmC-like protein 41 138 1.9E-19 T 13-10-2018 IPR003718 OsmC/Ohr family RAM_12290 b46843904a75abe014d4e7444227249d 238 Gene3D G3DSA:1.10.10.10 10 82 8.7E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_12290 b46843904a75abe014d4e7444227249d 238 SUPERFAMILY SSF50037 139 235 4.35E-17 T 13-10-2018 IPR008988 Transcriptional repressor, C-terminal RAM_12290 b46843904a75abe014d4e7444227249d 238 Gene3D G3DSA:2.30.30.90 160 236 3.9E-10 T 13-10-2018 IPR038157 Ferrous iron transporter, core domain RAM_12290 b46843904a75abe014d4e7444227249d 238 SUPERFAMILY SSF46785 11 71 1.44E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_12290 b46843904a75abe014d4e7444227249d 238 SMART SM00529 35 134 4.8E-43 T 13-10-2018 IPR022689 Iron dependent repressor GO:0003700|GO:0006355|GO:0046914 RAM_12290 b46843904a75abe014d4e7444227249d 238 Pfam PF01325 Iron dependent repressor, N-terminal DNA binding domain 12 71 7.0E-21 T 13-10-2018 IPR022687 DTXR-type HTH domain GO:0003677 RAM_12290 b46843904a75abe014d4e7444227249d 238 Pfam PF02742 Iron dependent repressor, metal binding and dimerisation domain 74 142 6.5E-29 T 13-10-2018 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 RAM_12290 b46843904a75abe014d4e7444227249d 238 Gene3D G3DSA:1.10.60.10 83 149 7.7E-30 T 13-10-2018 IPR036421 Iron dependent repressor, metal binding and dimerisation domain superfamily GO:0046914|GO:0046983 RAM_12290 b46843904a75abe014d4e7444227249d 238 Pfam PF04023 FeoA domain 171 234 1.3E-6 T 13-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 RAM_12290 b46843904a75abe014d4e7444227249d 238 SUPERFAMILY SSF47979 74 146 3.01E-26 T 13-10-2018 IPR036421 Iron dependent repressor, metal binding and dimerisation domain superfamily GO:0046914|GO:0046983 RAM_25390 fd446722dfcc2e720e63bc48b0c68259 131 SMART SM00422 1 69 1.7E-24 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_25390 fd446722dfcc2e720e63bc48b0c68259 131 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 36 56 2.0E-8 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_25390 fd446722dfcc2e720e63bc48b0c68259 131 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 2.0E-8 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_25390 fd446722dfcc2e720e63bc48b0c68259 131 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 2.0E-8 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_25390 fd446722dfcc2e720e63bc48b0c68259 131 Gene3D G3DSA:1.10.1660.10 1 125 5.7E-30 T 13-10-2018 RAM_25390 fd446722dfcc2e720e63bc48b0c68259 131 SUPERFAMILY SSF46955 1 111 8.79E-26 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily RAM_25390 fd446722dfcc2e720e63bc48b0c68259 131 Pfam PF13411 MerR HTH family regulatory protein 1 61 6.2E-18 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_39610 87c63d0d9dbb59aede5e1a5e1368782c 143 Pfam PF00753 Metallo-beta-lactamase superfamily 10 100 1.5E-9 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_39610 87c63d0d9dbb59aede5e1a5e1368782c 143 Gene3D G3DSA:3.60.15.10 5 135 4.1E-13 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_39610 87c63d0d9dbb59aede5e1a5e1368782c 143 SUPERFAMILY SSF56281 10 100 5.24E-15 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_09290 6429cb16e1039a5f5d25bcc7e1832879 407 Gene3D G3DSA:3.50.50.60 115 240 7.5E-101 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_09290 6429cb16e1039a5f5d25bcc7e1832879 407 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 305 2.8E-58 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAM_09290 6429cb16e1039a5f5d25bcc7e1832879 407 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 234 248 3.7E-19 T 13-10-2018 RAM_09290 6429cb16e1039a5f5d25bcc7e1832879 407 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 275 282 3.7E-19 T 13-10-2018 RAM_09290 6429cb16e1039a5f5d25bcc7e1832879 407 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 147 172 3.7E-19 T 13-10-2018 RAM_09290 6429cb16e1039a5f5d25bcc7e1832879 407 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 3.7E-19 T 13-10-2018 RAM_09290 6429cb16e1039a5f5d25bcc7e1832879 407 SUPERFAMILY SSF55424 317 401 2.33E-18 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RAM_09290 6429cb16e1039a5f5d25bcc7e1832879 407 SUPERFAMILY SSF51905 1 315 4.11E-47 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_09290 6429cb16e1039a5f5d25bcc7e1832879 407 Gene3D G3DSA:3.30.390.30 324 407 2.4E-16 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RAM_09290 6429cb16e1039a5f5d25bcc7e1832879 407 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 233 249 3.8E-29 T 13-10-2018 RAM_09290 6429cb16e1039a5f5d25bcc7e1832879 407 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 102 120 3.8E-29 T 13-10-2018 RAM_09290 6429cb16e1039a5f5d25bcc7e1832879 407 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 3.8E-29 T 13-10-2018 RAM_09290 6429cb16e1039a5f5d25bcc7e1832879 407 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 260 282 3.8E-29 T 13-10-2018 RAM_09290 6429cb16e1039a5f5d25bcc7e1832879 407 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 3.8E-29 T 13-10-2018 RAM_09290 6429cb16e1039a5f5d25bcc7e1832879 407 Pfam PF14759 Reductase C-terminal 324 400 1.4E-10 T 13-10-2018 IPR028202 Reductase, C-terminal RAM_09290 6429cb16e1039a5f5d25bcc7e1832879 407 Gene3D G3DSA:3.50.50.60 8 312 7.5E-101 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_31665 7e1c9a253614d7bd1eb6ec5264ff217a 96 Gene3D G3DSA:3.40.630.30 1 72 3.8E-8 T 13-10-2018 RAM_31665 7e1c9a253614d7bd1eb6ec5264ff217a 96 SUPERFAMILY SSF55729 3 68 3.66E-9 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_31665 7e1c9a253614d7bd1eb6ec5264ff217a 96 Pfam PF00583 Acetyltransferase (GNAT) family 18 51 4.5E-5 T 13-10-2018 IPR000182 GNAT domain RAM_30115 3246f395ac301fdcb31f9e4345afd0dd 271 Gene3D G3DSA:3.20.20.30 137 268 1.7E-6 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_30115 3246f395ac301fdcb31f9e4345afd0dd 271 Gene3D G3DSA:3.20.20.30 10 136 4.8E-20 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_30115 3246f395ac301fdcb31f9e4345afd0dd 271 SUPERFAMILY SSF51679 16 260 8.68E-32 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_30115 3246f395ac301fdcb31f9e4345afd0dd 271 Pfam PF00296 Luciferase-like monooxygenase 16 200 7.7E-25 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_09460 6343ab88296dfc4974413ebcdf2f4a19 277 Pfam PF09339 IclR helix-turn-helix domain 26 77 1.2E-15 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RAM_09460 6343ab88296dfc4974413ebcdf2f4a19 277 Gene3D G3DSA:1.10.10.10 13 90 1.1E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_09460 6343ab88296dfc4974413ebcdf2f4a19 277 SMART SM00346 24 112 2.2E-33 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RAM_09460 6343ab88296dfc4974413ebcdf2f4a19 277 SUPERFAMILY SSF46785 24 96 3.88E-14 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_09460 6343ab88296dfc4974413ebcdf2f4a19 277 Pfam PF01614 Bacterial transcriptional regulator 139 265 3.3E-39 T 13-10-2018 IPR014757 Transcription regulator IclR, C-terminal RAM_09460 6343ab88296dfc4974413ebcdf2f4a19 277 SUPERFAMILY SSF55781 88 267 7.19E-49 T 13-10-2018 RAM_09460 6343ab88296dfc4974413ebcdf2f4a19 277 Gene3D G3DSA:3.30.450.40 91 270 2.9E-64 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_09460 6343ab88296dfc4974413ebcdf2f4a19 277 TIGRFAM TIGR02431 pcaR_pcaU: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family 22 267 1.9E-100 T 13-10-2018 IPR012794 Beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR GO:0003677|GO:0045893|GO:0046278 RAM_26530 0760ff63227284ce4a0c77f67d106010 242 SMART SM01012 180 235 5.1E-24 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 RAM_26530 0760ff63227284ce4a0c77f67d106010 242 SUPERFAMILY SSF55781 31 180 1.57E-17 T 13-10-2018 RAM_26530 0760ff63227284ce4a0c77f67d106010 242 Gene3D G3DSA:3.30.450.40 5 182 2.2E-21 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_26530 0760ff63227284ce4a0c77f67d106010 242 PIRSF PIRSF036625 3 242 6.7E-53 T 13-10-2018 IPR012074 GAF-ANTAR transcription anti-termination regulator, putative RAM_26530 0760ff63227284ce4a0c77f67d106010 242 Pfam PF03861 ANTAR domain 182 234 9.8E-22 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 RAM_26530 0760ff63227284ce4a0c77f67d106010 242 Pfam PF13185 GAF domain 30 164 6.7E-14 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_26530 0760ff63227284ce4a0c77f67d106010 242 SMART SM00065 31 178 4.5E-5 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_26530 0760ff63227284ce4a0c77f67d106010 242 Gene3D G3DSA:1.10.10.10 183 242 6.1E-14 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_42000 5002d2dc37900ae87a98fbe908fcb4f1 300 SUPERFAMILY SSF53474 4 296 4.43E-44 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_42000 5002d2dc37900ae87a98fbe908fcb4f1 300 Pfam PF12697 Alpha/beta hydrolase family 31 286 6.0E-11 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_42000 5002d2dc37900ae87a98fbe908fcb4f1 300 Gene3D G3DSA:1.10.10.800 137 226 1.4E-40 T 13-10-2018 RAM_42000 5002d2dc37900ae87a98fbe908fcb4f1 300 Gene3D G3DSA:3.40.50.1820 18 276 1.4E-40 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_24295 1c7a5982cbbab9f0713b93c1ad8bc3ed 432 PIRSF PIRSF001235 23 432 2.0E-127 T 13-10-2018 IPR010158 Amidase, carbamoylase-type GO:0016813 RAM_24295 1c7a5982cbbab9f0713b93c1ad8bc3ed 432 Pfam PF01546 Peptidase family M20/M25/M40 97 426 6.7E-29 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 RAM_24295 1c7a5982cbbab9f0713b93c1ad8bc3ed 432 SUPERFAMILY SSF53187 22 430 5.14E-72 T 13-10-2018 RAM_24295 1c7a5982cbbab9f0713b93c1ad8bc3ed 432 TIGRFAM TIGR01879 hydantase: amidase, hydantoinase/carbamoylase family 29 428 4.4E-114 T 13-10-2018 IPR010158 Amidase, carbamoylase-type GO:0016813 RAM_24295 1c7a5982cbbab9f0713b93c1ad8bc3ed 432 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 96 105 - T 13-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 RAM_24295 1c7a5982cbbab9f0713b93c1ad8bc3ed 432 Gene3D G3DSA:3.30.70.360 234 348 3.7E-126 T 13-10-2018 RAM_24295 1c7a5982cbbab9f0713b93c1ad8bc3ed 432 Gene3D G3DSA:3.40.630.10 45 424 3.7E-126 T 13-10-2018 RAM_24295 1c7a5982cbbab9f0713b93c1ad8bc3ed 432 SUPERFAMILY SSF55031 234 343 9.77E-23 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain RAM_36325 0ce84b58f9ef0afd81ddf19ea9b0cea2 124 SUPERFAMILY SSF159238 1 124 1.14E-29 T 13-10-2018 IPR023159 SO1590-like superfamily RAM_36325 0ce84b58f9ef0afd81ddf19ea9b0cea2 124 Pfam PF11528 Protein of unknown function (DUF3224) 5 122 2.8E-31 T 13-10-2018 IPR021607 Protein of unknown function DUF3224 RAM_36325 0ce84b58f9ef0afd81ddf19ea9b0cea2 124 Gene3D G3DSA:2.40.350.10 1 124 1.5E-35 T 13-10-2018 IPR023159 SO1590-like superfamily RAM_28245 9d3c14d26af0214cb60e8cbf281693d3 633 SUPERFAMILY SSF90123 33 312 4.05E-5 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RAM_28245 9d3c14d26af0214cb60e8cbf281693d3 633 Pfam PF00005 ABC transporter 392 548 2.0E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_28245 9d3c14d26af0214cb60e8cbf281693d3 633 Gene3D G3DSA:3.40.50.300 368 621 2.0E-79 T 13-10-2018 RAM_28245 9d3c14d26af0214cb60e8cbf281693d3 633 SMART SM00382 400 594 1.3E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_28245 9d3c14d26af0214cb60e8cbf281693d3 633 SUPERFAMILY SSF52540 369 618 4.58E-72 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_28245 9d3c14d26af0214cb60e8cbf281693d3 633 ProSitePatterns PS00211 ABC transporters family signature. 517 531 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_31995 df24182ac00effc999c6f230c655589f 1698 Gene3D G3DSA:1.10.1200.10 565 652 1.5E-10 T 13-10-2018 IPR036736 ACP-like superfamily RAM_31995 df24182ac00effc999c6f230c655589f 1698 Gene3D G3DSA:3.40.50.1820 1579 1686 1.2E-26 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_31995 df24182ac00effc999c6f230c655589f 1698 SUPERFAMILY SSF47336 580 650 3.53E-10 T 13-10-2018 IPR036736 ACP-like superfamily RAM_31995 df24182ac00effc999c6f230c655589f 1698 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1115 1507 1.3E-130 T 13-10-2018 IPR010071 Amino acid adenylation domain RAM_31995 df24182ac00effc999c6f230c655589f 1698 Gene3D G3DSA:3.30.300.30 1478 1578 2.0E-27 T 13-10-2018 RAM_31995 df24182ac00effc999c6f230c655589f 1698 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1612 1627 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_31995 df24182ac00effc999c6f230c655589f 1698 ProSitePatterns PS00455 Putative AMP-binding domain signature. 158 169 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_31995 df24182ac00effc999c6f230c655589f 1698 SMART SM00823 Phosphopantetheine attachment site 1588 1645 3.0E-6 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_31995 df24182ac00effc999c6f230c655589f 1698 SMART SM00823 Phosphopantetheine attachment site 582 651 0.11 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_31995 df24182ac00effc999c6f230c655589f 1698 Gene3D G3DSA:3.30.559.10 663 1003 3.8E-100 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_31995 df24182ac00effc999c6f230c655589f 1698 SUPERFAMILY SSF52777 822 1053 9.34E-45 T 13-10-2018 RAM_31995 df24182ac00effc999c6f230c655589f 1698 Pfam PF00668 Condensation domain 663 1073 8.6E-68 T 13-10-2018 IPR001242 Condensation domain RAM_31995 df24182ac00effc999c6f230c655589f 1698 SUPERFAMILY SSF47336 1581 1654 3.14E-18 T 13-10-2018 IPR036736 ACP-like superfamily RAM_31995 df24182ac00effc999c6f230c655589f 1698 SUPERFAMILY SSF56801 1053 1601 5.76E-151 T 13-10-2018 RAM_31995 df24182ac00effc999c6f230c655589f 1698 Pfam PF13193 AMP-binding enzyme C-terminal domain 1491 1564 1.4E-8 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_31995 df24182ac00effc999c6f230c655589f 1698 SUPERFAMILY SSF56801 5 546 8.24E-99 T 13-10-2018 RAM_31995 df24182ac00effc999c6f230c655589f 1698 Pfam PF00501 AMP-binding enzyme 1094 1483 1.9E-95 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_31995 df24182ac00effc999c6f230c655589f 1698 Pfam PF00501 AMP-binding enzyme 11 444 2.1E-74 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_31995 df24182ac00effc999c6f230c655589f 1698 Gene3D G3DSA:3.30.300.30 438 560 8.6E-38 T 13-10-2018 RAM_31995 df24182ac00effc999c6f230c655589f 1698 Gene3D G3DSA:3.40.50.12780 5 436 1.1E-141 T 13-10-2018 RAM_31995 df24182ac00effc999c6f230c655589f 1698 SUPERFAMILY SSF52777 662 833 9.34E-39 T 13-10-2018 RAM_31995 df24182ac00effc999c6f230c655589f 1698 Pfam PF00550 Phosphopantetheine attachment site 1590 1653 8.3E-16 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_31995 df24182ac00effc999c6f230c655589f 1698 Pfam PF00550 Phosphopantetheine attachment site 583 642 2.6E-8 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_31995 df24182ac00effc999c6f230c655589f 1698 Gene3D G3DSA:3.40.50.12780 1083 1477 1.2E-138 T 13-10-2018 RAM_31995 df24182ac00effc999c6f230c655589f 1698 Gene3D G3DSA:3.30.559.30 822 1053 3.8E-100 T 13-10-2018 RAM_31995 df24182ac00effc999c6f230c655589f 1698 ProSitePatterns PS00012 Phosphopantetheine attachment site. 606 621 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_14750 71aff4d02d09c5d651987e3eeb032f90 204 SUPERFAMILY SSF48498 88 200 1.36E-16 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_14750 71aff4d02d09c5d651987e3eeb032f90 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 21 34 3.7E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_14750 71aff4d02d09c5d651987e3eeb032f90 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 42 65 3.7E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_14750 71aff4d02d09c5d651987e3eeb032f90 204 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 67 5.8E-18 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_14750 71aff4d02d09c5d651987e3eeb032f90 204 SUPERFAMILY SSF46689 14 93 5.99E-19 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_14750 71aff4d02d09c5d651987e3eeb032f90 204 Gene3D G3DSA:1.10.357.10 7 204 2.4E-59 T 13-10-2018 RAM_13805 f3cdf16bbd6c3af9275b6c050b2be615 759 Hamap MF_02065 Endolytic murein transglycosylase [mltG]. 397 756 24.852 T 13-10-2018 IPR003770 Endolytic murein transglycosylase RAM_13805 f3cdf16bbd6c3af9275b6c050b2be615 759 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 396 749 2.3E-38 T 13-10-2018 IPR003770 Endolytic murein transglycosylase RAM_13805 f3cdf16bbd6c3af9275b6c050b2be615 759 Pfam PF02618 YceG-like family 433 750 8.5E-60 T 13-10-2018 IPR003770 Endolytic murein transglycosylase RAM_15955 e5b38b14e48ac0f7f72d5c9617eb88d9 368 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 224 362 2.1E-23 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_15955 e5b38b14e48ac0f7f72d5c9617eb88d9 368 Gene3D G3DSA:1.20.140.10 232 366 1.9E-31 T 13-10-2018 RAM_15955 e5b38b14e48ac0f7f72d5c9617eb88d9 368 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 12 106 3.1E-12 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_15955 e5b38b14e48ac0f7f72d5c9617eb88d9 368 Gene3D G3DSA:2.40.110.10 137 221 2.3E-6 T 13-10-2018 RAM_15955 e5b38b14e48ac0f7f72d5c9617eb88d9 368 SUPERFAMILY SSF47203 227 363 2.58E-32 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_15955 e5b38b14e48ac0f7f72d5c9617eb88d9 368 Gene3D G3DSA:1.10.540.10 7 122 4.3E-22 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_15955 e5b38b14e48ac0f7f72d5c9617eb88d9 368 SUPERFAMILY SSF56645 4 188 5.5E-20 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_45265 8fc7ee1ae2fa088b9fc8c0023ebbdab7 395 Pfam PF06965 Na+/H+ antiporter 1 10 381 8.6E-130 T 13-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 RAM_45265 8fc7ee1ae2fa088b9fc8c0023ebbdab7 395 Gene3D G3DSA:1.20.1530.10 5 389 3.8E-131 T 13-10-2018 IPR023171 Na/H antiporter domain superfamily RAM_45265 8fc7ee1ae2fa088b9fc8c0023ebbdab7 395 TIGRFAM TIGR00773 NhaA: Na+/H+ antiporter NhaA 12 381 2.2E-102 T 13-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 RAM_45265 8fc7ee1ae2fa088b9fc8c0023ebbdab7 395 Hamap MF_01844 Na(+)/H(+) antiporter NhaA [nhaA]. 8 387 20.634 T 13-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 RAM_41715 f4e7edc9ca9e2c7ee1bd84557b037bef 1199 SUPERFAMILY SSF48452 96 260 9.87E-34 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_41715 f4e7edc9ca9e2c7ee1bd84557b037bef 1199 SMART SM00862 13 93 1.9E-9 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_41715 f4e7edc9ca9e2c7ee1bd84557b037bef 1199 SUPERFAMILY SSF52540 260 498 2.96E-12 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_41715 f4e7edc9ca9e2c7ee1bd84557b037bef 1199 Gene3D G3DSA:1.10.10.10 1103 1197 2.6E-13 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_41715 f4e7edc9ca9e2c7ee1bd84557b037bef 1199 Pfam PF13191 AAA ATPase domain 263 423 1.5E-18 T 13-10-2018 RAM_41715 f4e7edc9ca9e2c7ee1bd84557b037bef 1199 Gene3D G3DSA:1.25.40.10 97 264 5.7E-47 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_41715 f4e7edc9ca9e2c7ee1bd84557b037bef 1199 SMART SM01043 100 244 1.3E-47 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_41715 f4e7edc9ca9e2c7ee1bd84557b037bef 1199 Pfam PF00196 Bacterial regulatory proteins, luxR family 1140 1192 9.7E-10 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_41715 f4e7edc9ca9e2c7ee1bd84557b037bef 1199 Gene3D G3DSA:1.25.40.10 758 1054 2.8E-7 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_41715 f4e7edc9ca9e2c7ee1bd84557b037bef 1199 Pfam PF00486 Transcriptional regulatory protein, C terminal 21 76 3.4E-8 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_41715 f4e7edc9ca9e2c7ee1bd84557b037bef 1199 SUPERFAMILY SSF46894 3 77 1.39E-11 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_41715 f4e7edc9ca9e2c7ee1bd84557b037bef 1199 ProSitePatterns PS00622 LuxR-type HTH domain signature. 1155 1182 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_41715 f4e7edc9ca9e2c7ee1bd84557b037bef 1199 Gene3D G3DSA:1.10.10.10 1 95 1.3E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_41715 f4e7edc9ca9e2c7ee1bd84557b037bef 1199 SMART SM00421 1138 1195 1.1E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_41715 f4e7edc9ca9e2c7ee1bd84557b037bef 1199 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 1171 1183 4.8E-7 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_41715 f4e7edc9ca9e2c7ee1bd84557b037bef 1199 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 1155 1171 4.8E-7 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_41715 f4e7edc9ca9e2c7ee1bd84557b037bef 1199 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 1141 1155 4.8E-7 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_41715 f4e7edc9ca9e2c7ee1bd84557b037bef 1199 SUPERFAMILY SSF46894 1131 1196 3.74E-12 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_41715 f4e7edc9ca9e2c7ee1bd84557b037bef 1199 Pfam PF03704 Bacterial transcriptional activator domain 100 244 1.9E-41 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_04370 e5c3e72b4c48f31429bb56d56207ace3 523 Pfam PF00005 ABC transporter 36 180 1.7E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_04370 e5c3e72b4c48f31429bb56d56207ace3 523 SUPERFAMILY SSF52540 17 241 1.14E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_04370 e5c3e72b4c48f31429bb56d56207ace3 523 SMART SM00382 43 228 1.1E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_04370 e5c3e72b4c48f31429bb56d56207ace3 523 SMART SM00382 294 495 7.2 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_04370 e5c3e72b4c48f31429bb56d56207ace3 523 Pfam PF00005 ABC transporter 285 446 6.4E-12 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_04370 e5c3e72b4c48f31429bb56d56207ace3 523 ProSitePatterns PS00211 ABC transporters family signature. 419 433 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_04370 e5c3e72b4c48f31429bb56d56207ace3 523 Gene3D G3DSA:3.40.50.300 267 514 4.1E-34 T 13-10-2018 RAM_04370 e5c3e72b4c48f31429bb56d56207ace3 523 Gene3D G3DSA:3.40.50.300 3 256 9.2E-58 T 13-10-2018 RAM_04370 e5c3e72b4c48f31429bb56d56207ace3 523 SUPERFAMILY SSF52540 262 506 6.71E-36 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_02275 c5ef3e6241fe45d39b202464ebe5de46 207 SUPERFAMILY SSF56784 3 203 1.84E-31 T 13-10-2018 IPR036412 HAD-like superfamily RAM_02275 c5ef3e6241fe45d39b202464ebe5de46 207 Gene3D G3DSA:1.10.150.240 14 79 1.3E-50 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 RAM_02275 c5ef3e6241fe45d39b202464ebe5de46 207 Gene3D G3DSA:3.40.50.1000 4 203 1.3E-50 T 13-10-2018 IPR023214 HAD superfamily RAM_02275 c5ef3e6241fe45d39b202464ebe5de46 207 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 94 107 5.4E-6 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_02275 c5ef3e6241fe45d39b202464ebe5de46 207 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 168 181 5.4E-6 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_02275 c5ef3e6241fe45d39b202464ebe5de46 207 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 125 141 5.4E-6 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_02275 c5ef3e6241fe45d39b202464ebe5de46 207 Pfam PF00702 haloacid dehalogenase-like hydrolase 56 173 1.0E-7 T 13-10-2018 RAM_43465 45f226feb01348e3351a6c912f80138a 220 Pfam PF00072 Response regulator receiver domain 3 113 2.1E-23 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_43465 45f226feb01348e3351a6c912f80138a 220 Gene3D G3DSA:1.10.10.10 122 219 2.1E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_43465 45f226feb01348e3351a6c912f80138a 220 SMART SM00448 1 112 7.4E-31 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_43465 45f226feb01348e3351a6c912f80138a 220 SUPERFAMILY SSF52172 2 171 8.45E-34 T 13-10-2018 IPR011006 CheY-like superfamily RAM_43465 45f226feb01348e3351a6c912f80138a 220 Gene3D G3DSA:3.40.50.2300 1 120 6.3E-31 T 13-10-2018 RAM_43465 45f226feb01348e3351a6c912f80138a 220 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 217 2.8E-22 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_43465 45f226feb01348e3351a6c912f80138a 220 SMART SM00862 145 217 1.9E-22 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_33005 1c2fe0268c52ec948f5567b5cba60eec 219 SUPERFAMILY SSF48264 11 204 4.24E-27 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_33005 1c2fe0268c52ec948f5567b5cba60eec 219 Gene3D G3DSA:1.10.630.10 2 215 1.1E-46 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_33005 1c2fe0268c52ec948f5567b5cba60eec 219 PRINTS PR00359 B-class P450 signature 139 155 7.3E-12 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_33005 1c2fe0268c52ec948f5567b5cba60eec 219 PRINTS PR00359 B-class P450 signature 156 171 7.3E-12 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_33005 1c2fe0268c52ec948f5567b5cba60eec 219 PRINTS PR00359 B-class P450 signature 92 103 7.3E-12 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_42145 ce3ca3afa988f7a5a217af471df48c38 424 SUPERFAMILY SSF54909 57 415 1.79E-91 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_42145 ce3ca3afa988f7a5a217af471df48c38 424 TIGRFAM TIGR01412 tat_substr_1: Tat-translocated enzyme 10 423 1.5E-153 T 13-10-2018 IPR006313 Deferrochelatase/peroxidase EfeB GO:0004601|GO:0015684|GO:0020037|GO:0033212 RAM_42145 ce3ca3afa988f7a5a217af471df48c38 424 Pfam PF04261 Dyp-type peroxidase family 62 412 1.1E-106 T 13-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 RAM_42145 ce3ca3afa988f7a5a217af471df48c38 424 TIGRFAM TIGR01413 Dyp_perox_fam: Dyp-type peroxidase family 62 412 5.0E-94 T 13-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 RAM_10380 d7e42059bd1826c3ceb738496dbb5f2e 586 SUPERFAMILY SSF56519 131 288 3.66E-7 T 13-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 RAM_10380 d7e42059bd1826c3ceb738496dbb5f2e 586 SUPERFAMILY SSF56601 250 571 3.59E-58 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_10380 d7e42059bd1826c3ceb738496dbb5f2e 586 Gene3D G3DSA:3.40.710.10 291 583 3.9E-63 T 13-10-2018 RAM_10380 d7e42059bd1826c3ceb738496dbb5f2e 586 Pfam PF00905 Penicillin binding protein transpeptidase domain 312 577 1.9E-39 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RAM_10380 d7e42059bd1826c3ceb738496dbb5f2e 586 SUPERFAMILY SSF54427 19 121 4.7E-5 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_10380 d7e42059bd1826c3ceb738496dbb5f2e 586 Pfam PF05223 NTF2-like N-terminal transpeptidase domain 16 124 3.7E-17 T 13-10-2018 IPR007887 NTF2-like N-terminal transpeptidase GO:0046677 RAM_21140 f5b4a3dda4bb4f1b4a5a985fa022edf1 380 ProSitePatterns PS00217 Sugar transport proteins signature 2. 109 134 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RAM_21140 f5b4a3dda4bb4f1b4a5a985fa022edf1 380 Gene3D G3DSA:1.20.1250.20 5 370 1.3E-20 T 13-10-2018 RAM_21140 f5b4a3dda4bb4f1b4a5a985fa022edf1 380 SUPERFAMILY SSF103473 6 367 3.66E-32 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_21140 f5b4a3dda4bb4f1b4a5a985fa022edf1 380 Pfam PF06779 Uncharacterised MFS-type transporter YbfB 23 361 1.7E-19 T 13-10-2018 IPR010645 Uncharacterised MFS-type transporter YbfB RAM_24615 d201d5146f0d6b930297e7d9fb4f953d 253 Pfam PF01476 LysM domain 200 246 1.1E-5 T 13-10-2018 IPR018392 LysM domain RAM_24615 d201d5146f0d6b930297e7d9fb4f953d 253 Gene3D G3DSA:3.10.350.10 198 244 8.1E-7 T 13-10-2018 IPR036779 LysM domain superfamily RAM_08700 6bd4794b9dfde04715de41779aac9674 225 Pfam PF00216 Bacterial DNA-binding protein 3 89 4.3E-24 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RAM_08700 6bd4794b9dfde04715de41779aac9674 225 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 1.2E-13 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RAM_08700 6bd4794b9dfde04715de41779aac9674 225 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 1.2E-13 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RAM_08700 6bd4794b9dfde04715de41779aac9674 225 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 1.2E-13 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RAM_08700 6bd4794b9dfde04715de41779aac9674 225 Gene3D G3DSA:4.10.520.10 2 99 4.4E-29 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 RAM_08700 6bd4794b9dfde04715de41779aac9674 225 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 13-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 RAM_08700 6bd4794b9dfde04715de41779aac9674 225 SMART SM00411 2 90 1.8E-31 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RAM_08700 6bd4794b9dfde04715de41779aac9674 225 SUPERFAMILY SSF47729 3 93 6.18E-24 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 RAM_05185 9e0fb67b4388a5f5a96db6281f0c4313 121 SUPERFAMILY SSF46785 6 80 1.85E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_05185 9e0fb67b4388a5f5a96db6281f0c4313 121 SMART SM00345 17 76 3.4E-13 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_05185 9e0fb67b4388a5f5a96db6281f0c4313 121 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 76 4.0E-15 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_05185 9e0fb67b4388a5f5a96db6281f0c4313 121 Gene3D G3DSA:1.10.10.10 10 120 9.6E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_12740 e5df2703808aa2f52caee49edddebf14 461 Pfam PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain 4 265 4.8E-72 T 13-10-2018 IPR004255 O-acyltransferase, WSD1, N-terminal GO:0004144|GO:0045017 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20 RAM_12740 e5df2703808aa2f52caee49edddebf14 461 Gene3D G3DSA:3.30.559.30 192 274 7.6E-6 T 13-10-2018 RAM_12740 e5df2703808aa2f52caee49edddebf14 461 Gene3D G3DSA:3.30.559.10 42 191 7.6E-6 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_12740 e5df2703808aa2f52caee49edddebf14 461 TIGRFAM TIGR02946 acyl_WS_DGAT: acyltransferase, WS/DGAT/MGAT 4 460 1.6E-147 T 13-10-2018 IPR014292 Acyltransferase, WS/DGAT/MGAT GO:0016746|GO:0045017 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20 RAM_12740 e5df2703808aa2f52caee49edddebf14 461 Pfam PF06974 Protein of unknown function (DUF1298) 307 456 2.0E-28 T 13-10-2018 IPR009721 O-acyltransferase WSD1, C-terminal GO:0004144 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20 RAM_12740 e5df2703808aa2f52caee49edddebf14 461 SUPERFAMILY SSF52777 33 157 6.56E-11 T 13-10-2018 RAM_40525 c5e2fb5f7ae5cb97d78ac224f646490a 268 Pfam PF04672 S-adenosyl methyltransferase 7 267 1.6E-85 T 13-10-2018 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type RAM_40525 c5e2fb5f7ae5cb97d78ac224f646490a 268 Gene3D G3DSA:3.40.50.150 1 268 5.8E-97 T 13-10-2018 RAM_40525 c5e2fb5f7ae5cb97d78ac224f646490a 268 SUPERFAMILY SSF53335 11 256 2.29E-38 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_40525 c5e2fb5f7ae5cb97d78ac224f646490a 268 PIRSF PIRSF017393 1 268 2.6E-93 T 13-10-2018 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type RAM_41065 7386e98fdf89904bf0ef44a854a8b2e5 574 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 420 529 3.7E-19 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_41065 7386e98fdf89904bf0ef44a854a8b2e5 574 Pfam PF00672 HAMP domain 246 295 1.3E-8 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_41065 7386e98fdf89904bf0ef44a854a8b2e5 574 SMART SM00387 419 530 2.9E-31 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_41065 7386e98fdf89904bf0ef44a854a8b2e5 574 Gene3D G3DSA:3.30.565.10 378 530 1.0E-33 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_41065 7386e98fdf89904bf0ef44a854a8b2e5 574 SUPERFAMILY SSF47384 290 373 2.55E-15 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RAM_41065 7386e98fdf89904bf0ef44a854a8b2e5 574 Gene3D G3DSA:1.10.287.130 250 373 8.9E-30 T 13-10-2018 RAM_41065 7386e98fdf89904bf0ef44a854a8b2e5 574 PRINTS PR00344 Bacterial sensor protein C-terminal signature 490 508 4.7E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_41065 7386e98fdf89904bf0ef44a854a8b2e5 574 PRINTS PR00344 Bacterial sensor protein C-terminal signature 455 469 4.7E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_41065 7386e98fdf89904bf0ef44a854a8b2e5 574 PRINTS PR00344 Bacterial sensor protein C-terminal signature 473 483 4.7E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_41065 7386e98fdf89904bf0ef44a854a8b2e5 574 PRINTS PR00344 Bacterial sensor protein C-terminal signature 514 527 4.7E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_41065 7386e98fdf89904bf0ef44a854a8b2e5 574 SMART SM00304 246 298 2.0E-13 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_41065 7386e98fdf89904bf0ef44a854a8b2e5 574 SMART SM00388 306 373 1.6E-15 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_41065 7386e98fdf89904bf0ef44a854a8b2e5 574 SUPERFAMILY SSF158472 246 296 8.24E-8 T 13-10-2018 RAM_41065 7386e98fdf89904bf0ef44a854a8b2e5 574 SUPERFAMILY SSF55874 363 528 1.96E-40 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_41065 7386e98fdf89904bf0ef44a854a8b2e5 574 Pfam PF00512 His Kinase A (phospho-acceptor) domain 307 373 7.9E-15 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_17420 ce09d778fe4664cc82efea775a4d8a6b 553 Pfam PF12222 Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A 69 452 2.0E-61 T 13-10-2018 IPR021102 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A RAM_20925 dcf46dd960a83a6face5fa8742ad253a 150 Gene3D G3DSA:1.10.10.10 1 81 4.3E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_20925 dcf46dd960a83a6face5fa8742ad253a 150 Pfam PF01475 Ferric uptake regulator family 12 121 2.8E-21 T 13-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 RAM_20925 dcf46dd960a83a6face5fa8742ad253a 150 SUPERFAMILY SSF46785 3 133 3.58E-35 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_20925 dcf46dd960a83a6face5fa8742ad253a 150 Gene3D G3DSA:3.30.1490.190 83 143 8.3E-14 T 13-10-2018 RAM_27830 5ce2802474036e42b257a6163bec82db 551 Gene3D G3DSA:3.30.750.24 421 545 1.9E-22 T 13-10-2018 IPR036513 STAS domain superfamily RAM_27830 5ce2802474036e42b257a6163bec82db 551 SUPERFAMILY SSF52091 434 536 1.14E-12 T 13-10-2018 IPR036513 STAS domain superfamily RAM_27830 5ce2802474036e42b257a6163bec82db 551 Pfam PF00916 Sulfate permease family 24 387 4.0E-63 T 13-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 RAM_27830 5ce2802474036e42b257a6163bec82db 551 Pfam PF01740 STAS domain 431 532 4.9E-12 T 13-10-2018 IPR002645 STAS domain RAM_04225 a5f4e86eb568789f31386bb207842717 258 Gene3D G3DSA:1.10.10.60 159 258 2.3E-24 T 13-10-2018 RAM_04225 a5f4e86eb568789f31386bb207842717 258 SUPERFAMILY SSF46689 209 256 8.6E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_04225 a5f4e86eb568789f31386bb207842717 258 Pfam PF02311 AraC-like ligand binding domain 17 135 5.8E-17 T 13-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 RAM_04225 a5f4e86eb568789f31386bb207842717 258 SUPERFAMILY SSF46689 161 207 1.66E-5 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_04225 a5f4e86eb568789f31386bb207842717 258 SMART SM00342 173 255 2.8E-22 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_04225 a5f4e86eb568789f31386bb207842717 258 SUPERFAMILY SSF51215 13 130 3.4E-12 T 13-10-2018 IPR037923 Transcription regulator HTH-like RAM_04225 a5f4e86eb568789f31386bb207842717 258 Pfam PF12833 Helix-turn-helix domain 183 256 2.8E-21 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_40465 a8f3f359b250890a55bef0f46fbd0066 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 55 71 1.6E-5 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_40465 a8f3f359b250890a55bef0f46fbd0066 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 41 55 1.6E-5 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_40465 a8f3f359b250890a55bef0f46fbd0066 239 SMART SM00345 23 81 9.8E-20 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_40465 a8f3f359b250890a55bef0f46fbd0066 239 Gene3D G3DSA:1.20.120.530 86 224 9.6E-29 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_40465 a8f3f359b250890a55bef0f46fbd0066 239 SUPERFAMILY SSF48008 87 221 2.88E-28 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_40465 a8f3f359b250890a55bef0f46fbd0066 239 Pfam PF07729 FCD domain 91 215 1.0E-21 T 13-10-2018 IPR011711 GntR, C-terminal RAM_40465 a8f3f359b250890a55bef0f46fbd0066 239 Gene3D G3DSA:1.10.10.10 8 81 4.1E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_40465 a8f3f359b250890a55bef0f46fbd0066 239 SUPERFAMILY SSF46785 12 101 1.3E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_40465 a8f3f359b250890a55bef0f46fbd0066 239 Pfam PF00392 Bacterial regulatory proteins, gntR family 21 81 4.2E-18 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_40465 a8f3f359b250890a55bef0f46fbd0066 239 SMART SM00895 91 216 4.0E-15 T 13-10-2018 IPR011711 GntR, C-terminal RAM_32035 a3c913285ad274702025882a8510b720 297 SUPERFAMILY SSF46785 5 110 2.72E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_32035 a3c913285ad274702025882a8510b720 297 SUPERFAMILY SSF53850 92 290 8.32E-23 T 13-10-2018 RAM_32035 a3c913285ad274702025882a8510b720 297 Gene3D G3DSA:1.10.10.10 1 85 9.2E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_32035 a3c913285ad274702025882a8510b720 297 TIGRFAM TIGR03298 argP: transcriptional regulator, ArgP family 7 291 2.9E-105 T 13-10-2018 IPR017685 HTH-type transcriptional regulator ArgP RAM_32035 a3c913285ad274702025882a8510b720 297 Gene3D G3DSA:3.40.190.290 87 293 2.4E-76 T 13-10-2018 RAM_32035 a3c913285ad274702025882a8510b720 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 3.4E-16 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_32035 a3c913285ad274702025882a8510b720 297 Pfam PF03466 LysR substrate binding domain 95 287 1.8E-17 T 13-10-2018 IPR005119 LysR, substrate-binding RAM_23270 36db18137ee8ecbe6b90035e18e38cde 380 Gene3D G3DSA:3.30.470.20 1 216 4.0E-73 T 13-10-2018 RAM_23270 36db18137ee8ecbe6b90035e18e38cde 380 SUPERFAMILY SSF52210 223 375 8.77E-38 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RAM_23270 36db18137ee8ecbe6b90035e18e38cde 380 Pfam PF08442 ATP-grasp domain 2 189 7.9E-62 T 13-10-2018 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RAM_23270 36db18137ee8ecbe6b90035e18e38cde 380 Gene3D G3DSA:3.30.1490.20 21 96 4.0E-73 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 RAM_23270 36db18137ee8ecbe6b90035e18e38cde 380 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 375 6.5E-116 T 13-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RAM_23270 36db18137ee8ecbe6b90035e18e38cde 380 Pfam PF00549 CoA-ligase 248 368 1.0E-12 T 13-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RAM_23270 36db18137ee8ecbe6b90035e18e38cde 380 Hamap MF_00558 Succinate--CoA ligase [ADP-forming] subunit beta [sucC]. 1 377 36.312 T 13-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RAM_23270 36db18137ee8ecbe6b90035e18e38cde 380 SUPERFAMILY SSF56059 1 217 4.24E-61 T 13-10-2018 RAM_23270 36db18137ee8ecbe6b90035e18e38cde 380 Gene3D G3DSA:3.40.50.261 224 378 9.8E-43 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RAM_23270 36db18137ee8ecbe6b90035e18e38cde 380 PIRSF PIRSF001554 1 379 2.3E-129 T 13-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RAM_34075 28dc7c15af5f33e22cb93e21dd6f0c9f 330 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 223 329 3.5E-23 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_34075 28dc7c15af5f33e22cb93e21dd6f0c9f 330 SUPERFAMILY SSF47384 97 178 9.42E-20 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RAM_34075 28dc7c15af5f33e22cb93e21dd6f0c9f 330 Pfam PF00512 His Kinase A (phospho-acceptor) domain 115 178 6.0E-16 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_34075 28dc7c15af5f33e22cb93e21dd6f0c9f 330 Gene3D G3DSA:3.30.565.10 184 330 1.7E-37 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_34075 28dc7c15af5f33e22cb93e21dd6f0c9f 330 SUPERFAMILY SSF55874 167 330 4.98E-42 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_34075 28dc7c15af5f33e22cb93e21dd6f0c9f 330 SMART SM00387 222 330 7.3E-33 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_34075 28dc7c15af5f33e22cb93e21dd6f0c9f 330 Gene3D G3DSA:1.10.287.130 111 177 2.3E-20 T 13-10-2018 RAM_34075 28dc7c15af5f33e22cb93e21dd6f0c9f 330 SMART SM00388 114 178 1.2E-19 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_34075 28dc7c15af5f33e22cb93e21dd6f0c9f 330 PRINTS PR00344 Bacterial sensor protein C-terminal signature 291 309 8.6E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_34075 28dc7c15af5f33e22cb93e21dd6f0c9f 330 PRINTS PR00344 Bacterial sensor protein C-terminal signature 259 273 8.6E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_34075 28dc7c15af5f33e22cb93e21dd6f0c9f 330 PRINTS PR00344 Bacterial sensor protein C-terminal signature 316 329 8.6E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_34075 28dc7c15af5f33e22cb93e21dd6f0c9f 330 PRINTS PR00344 Bacterial sensor protein C-terminal signature 277 287 8.6E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_34075 28dc7c15af5f33e22cb93e21dd6f0c9f 330 Pfam PF00672 HAMP domain 63 108 6.6E-15 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_34075 28dc7c15af5f33e22cb93e21dd6f0c9f 330 SUPERFAMILY SSF158472 63 109 3.01E-12 T 13-10-2018 RAM_34075 28dc7c15af5f33e22cb93e21dd6f0c9f 330 Gene3D G3DSA:1.10.8.500 60 110 9.1E-11 T 13-10-2018 RAM_34075 28dc7c15af5f33e22cb93e21dd6f0c9f 330 SMART SM00304 61 113 8.5E-16 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_37965 062eb5a3936709fc25e3d1bf32bdadfe 949 Gene3D G3DSA:2.60.40.10 744 843 2.3E-15 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_37965 062eb5a3936709fc25e3d1bf32bdadfe 949 Gene3D G3DSA:1.50.10.10 265 741 7.8E-193 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 RAM_37965 062eb5a3936709fc25e3d1bf32bdadfe 949 Pfam PF02018 Carbohydrate binding domain 25 147 1.7E-10 T 13-10-2018 IPR003305 Carbohydrate-binding, CenC-like GO:0016798 RAM_37965 062eb5a3936709fc25e3d1bf32bdadfe 949 SMART SM00637 848 948 3.8E-38 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_37965 062eb5a3936709fc25e3d1bf32bdadfe 949 SUPERFAMILY SSF49265 747 843 5.09E-16 T 13-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 RAM_37965 062eb5a3936709fc25e3d1bf32bdadfe 949 Gene3D G3DSA:2.60.40.290 844 949 9.4E-31 T 13-10-2018 IPR012291 CBM2, carbohydrate-binding domain superfamily GO:0004553|GO:0030247 RAM_37965 062eb5a3936709fc25e3d1bf32bdadfe 949 SMART SM00060 750 828 2.9E-9 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 RAM_37965 062eb5a3936709fc25e3d1bf32bdadfe 949 Pfam PF00759 Glycosyl hydrolase family 9 269 733 1.1E-101 T 13-10-2018 IPR001701 Glycoside hydrolase family 9 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 RAM_37965 062eb5a3936709fc25e3d1bf32bdadfe 949 Gene3D G3DSA:2.60.120.260 20 164 1.0E-29 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_37965 062eb5a3936709fc25e3d1bf32bdadfe 949 ProSitePatterns PS00698 Glycosyl hydrolases family 9 active sites signature 2. 710 728 - T 13-10-2018 IPR033126 Glycosyl hydrolases family 9, Asp/Glu active sites KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 RAM_37965 062eb5a3936709fc25e3d1bf32bdadfe 949 ProSitePatterns PS00561 CBM2a (carbohydrate-binding type-2) domain signature. 912 925 - T 13-10-2018 IPR018366 Carbohydrate-binding type-2, conserved site GO:0004553|GO:0005975|GO:0030246 RAM_37965 062eb5a3936709fc25e3d1bf32bdadfe 949 SUPERFAMILY SSF48208 268 737 1.26E-131 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_37965 062eb5a3936709fc25e3d1bf32bdadfe 949 Gene3D G3DSA:2.60.40.10 172 263 1.9E-23 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_37965 062eb5a3936709fc25e3d1bf32bdadfe 949 SUPERFAMILY SSF49384 844 948 1.26E-24 T 13-10-2018 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily GO:0030246 RAM_37965 062eb5a3936709fc25e3d1bf32bdadfe 949 Pfam PF00041 Fibronectin type III domain 755 831 5.1E-10 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 RAM_37965 062eb5a3936709fc25e3d1bf32bdadfe 949 Pfam PF02927 Cellulase N-terminal ig-like domain 175 256 3.8E-21 T 13-10-2018 IPR004197 Cellulase, Ig-like domain GO:0005975|GO:0008810 RAM_37965 062eb5a3936709fc25e3d1bf32bdadfe 949 SUPERFAMILY SSF81296 175 263 7.0E-21 T 13-10-2018 IPR014756 Immunoglobulin E-set RAM_37965 062eb5a3936709fc25e3d1bf32bdadfe 949 SUPERFAMILY SSF49785 22 163 2.19E-28 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_37965 062eb5a3936709fc25e3d1bf32bdadfe 949 Pfam PF00553 Cellulose binding domain 848 948 3.0E-27 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_07480 efb481c1471f9891d6b7adc680dfdacf 497 Gene3D G3DSA:3.40.50.1820 3 488 8.3E-122 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_07480 efb481c1471f9891d6b7adc680dfdacf 497 Pfam PF00135 Carboxylesterase family 5 470 4.2E-94 T 13-10-2018 IPR002018 Carboxylesterase, type B RAM_07480 efb481c1471f9891d6b7adc680dfdacf 497 ProSitePatterns PS00122 Carboxylesterases type-B serine active site. 176 191 - T 13-10-2018 IPR019826 Carboxylesterase type B, active site RAM_07480 efb481c1471f9891d6b7adc680dfdacf 497 SUPERFAMILY SSF53474 5 484 1.91E-104 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_02030 3d83175fc07c11c8326ba0ab9a5c6dbf 287 Gene3D G3DSA:1.10.260.40 3 72 1.8E-11 T 13-10-2018 RAM_02030 3d83175fc07c11c8326ba0ab9a5c6dbf 287 SMART SM00530 15 70 3.9E-8 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_02030 3d83175fc07c11c8326ba0ab9a5c6dbf 287 SUPERFAMILY SSF47413 7 68 2.17E-11 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_02030 3d83175fc07c11c8326ba0ab9a5c6dbf 287 Pfam PF13560 Helix-turn-helix domain 11 73 3.7E-15 T 13-10-2018 RAM_07710 166446d05e5b3325e90bac080c889bdd 463 SMART SM00100 91 214 1.7E-5 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain RAM_07710 166446d05e5b3325e90bac080c889bdd 463 Pfam PF00027 Cyclic nucleotide-binding domain 111 194 1.7E-12 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain RAM_07710 166446d05e5b3325e90bac080c889bdd 463 SUPERFAMILY SSF51206 86 201 5.11E-20 T 13-10-2018 IPR018490 Cyclic nucleotide-binding-like RAM_07710 166446d05e5b3325e90bac080c889bdd 463 Gene3D G3DSA:2.60.120.10 85 222 3.4E-19 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_41945 d049c6e9e006da3bb2b30d780f470d7f 453 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 16 39 - T 13-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 RAM_41945 d049c6e9e006da3bb2b30d780f470d7f 453 Gene3D G3DSA:3.30.200.20 2 85 1.4E-20 T 13-10-2018 RAM_41945 d049c6e9e006da3bb2b30d780f470d7f 453 Pfam PF00069 Protein kinase domain 10 210 6.7E-37 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_41945 d049c6e9e006da3bb2b30d780f470d7f 453 SMART SM00220 10 255 1.2E-43 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_41945 d049c6e9e006da3bb2b30d780f470d7f 453 SUPERFAMILY SSF56112 7 254 3.06E-62 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_41945 d049c6e9e006da3bb2b30d780f470d7f 453 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 129 141 - T 13-10-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 RAM_41945 d049c6e9e006da3bb2b30d780f470d7f 453 Gene3D G3DSA:1.10.510.10 86 285 9.5E-39 T 13-10-2018 RAM_21910 882a81fd3794b415fe2deb6d52a50c88 502 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 23 316 1.2E-50 T 13-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 RAM_21910 882a81fd3794b415fe2deb6d52a50c88 502 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 423 486 3.3E-11 T 13-10-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 RAM_21910 882a81fd3794b415fe2deb6d52a50c88 502 SUPERFAMILY SSF53383 23 397 3.13E-69 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_21910 882a81fd3794b415fe2deb6d52a50c88 502 SUPERFAMILY SSF55904 355 499 9.02E-31 T 13-10-2018 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily GO:0003824 RAM_21910 882a81fd3794b415fe2deb6d52a50c88 502 Gene3D G3DSA:3.90.100.10 411 496 3.6E-17 T 13-10-2018 RAM_21910 882a81fd3794b415fe2deb6d52a50c88 502 Gene3D G3DSA:3.40.640.10 22 299 1.3E-76 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_43515 4bf6ed52de3a2ee46951fb555c7c4851 207 PRINTS PR01703 Manganese superoxide dismutase signature 7 18 6.6E-19 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RAM_43515 4bf6ed52de3a2ee46951fb555c7c4851 207 PRINTS PR01703 Manganese superoxide dismutase signature 158 170 6.6E-19 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RAM_43515 4bf6ed52de3a2ee46951fb555c7c4851 207 PRINTS PR01703 Manganese superoxide dismutase signature 28 41 6.6E-19 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RAM_43515 4bf6ed52de3a2ee46951fb555c7c4851 207 PRINTS PR01703 Manganese superoxide dismutase signature 120 128 6.6E-19 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RAM_43515 4bf6ed52de3a2ee46951fb555c7c4851 207 PRINTS PR01703 Manganese superoxide dismutase signature 67 80 6.6E-19 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RAM_43515 4bf6ed52de3a2ee46951fb555c7c4851 207 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 3 84 9.1E-30 T 13-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RAM_43515 4bf6ed52de3a2ee46951fb555c7c4851 207 SUPERFAMILY SSF46609 3 85 2.23E-29 T 13-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RAM_43515 4bf6ed52de3a2ee46951fb555c7c4851 207 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 160 167 - T 13-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RAM_43515 4bf6ed52de3a2ee46951fb555c7c4851 207 Gene3D G3DSA:1.10.287.990 21 84 3.8E-23 T 13-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RAM_43515 4bf6ed52de3a2ee46951fb555c7c4851 207 PIRSF PIRSF000349 1 202 1.6E-69 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RAM_43515 4bf6ed52de3a2ee46951fb555c7c4851 207 SUPERFAMILY SSF54719 84 197 4.32E-41 T 13-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RAM_43515 4bf6ed52de3a2ee46951fb555c7c4851 207 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 91 193 2.6E-33 T 13-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RAM_43515 4bf6ed52de3a2ee46951fb555c7c4851 207 Gene3D G3DSA:2.40.500.20 85 207 3.5E-42 T 13-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RAM_20600 70f470efe8e62a0db192f566d02d7bf1 246 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 5 185 2.7E-5 T 13-10-2018 RAM_20600 70f470efe8e62a0db192f566d02d7bf1 246 SUPERFAMILY SSF51735 5 245 6.76E-78 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_20600 70f470efe8e62a0db192f566d02d7bf1 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 9.0E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_20600 70f470efe8e62a0db192f566d02d7bf1 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 9.0E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_20600 70f470efe8e62a0db192f566d02d7bf1 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 9.0E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_20600 70f470efe8e62a0db192f566d02d7bf1 246 Gene3D G3DSA:3.40.50.720 4 246 6.9E-78 T 13-10-2018 RAM_20600 70f470efe8e62a0db192f566d02d7bf1 246 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_20600 70f470efe8e62a0db192f566d02d7bf1 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 6.3E-45 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_20600 70f470efe8e62a0db192f566d02d7bf1 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 6.3E-45 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_20600 70f470efe8e62a0db192f566d02d7bf1 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 6.3E-45 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_20600 70f470efe8e62a0db192f566d02d7bf1 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 6.3E-45 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_20600 70f470efe8e62a0db192f566d02d7bf1 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 6.3E-45 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_20600 70f470efe8e62a0db192f566d02d7bf1 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 6.3E-45 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_20600 70f470efe8e62a0db192f566d02d7bf1 246 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 244 1.2E-63 T 13-10-2018 RAM_20600 70f470efe8e62a0db192f566d02d7bf1 246 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 7 245 6.5E-90 T 13-10-2018 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 RAM_09955 30f7a376146bd572ebdf9c707b69fde2 122 PRINTS PR00061 Ribosomal protein L19 signature 33 62 5.4E-42 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_09955 30f7a376146bd572ebdf9c707b69fde2 122 PRINTS PR00061 Ribosomal protein L19 signature 87 112 5.4E-42 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_09955 30f7a376146bd572ebdf9c707b69fde2 122 PRINTS PR00061 Ribosomal protein L19 signature 3 32 5.4E-42 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_09955 30f7a376146bd572ebdf9c707b69fde2 122 SUPERFAMILY SSF50104 1 115 1.0E-47 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily RAM_09955 30f7a376146bd572ebdf9c707b69fde2 122 Pfam PF01245 Ribosomal protein L19 4 112 2.2E-50 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_09955 30f7a376146bd572ebdf9c707b69fde2 122 Gene3D G3DSA:2.30.30.790 2 116 5.4E-15 T 13-10-2018 IPR038657 Ribosomal protein L19 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_09955 30f7a376146bd572ebdf9c707b69fde2 122 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 1 113 29.967 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_09955 30f7a376146bd572ebdf9c707b69fde2 122 PIRSF PIRSF002191 1 122 3.0E-51 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_09955 30f7a376146bd572ebdf9c707b69fde2 122 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 2 112 2.3E-49 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_09955 30f7a376146bd572ebdf9c707b69fde2 122 ProSitePatterns PS01015 Ribosomal protein L19 signature. 85 100 - T 13-10-2018 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_41050 fa5838b04c0ad40b5d6e462b6ae02b82 228 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 102 2.0E-28 T 13-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 RAM_41050 fa5838b04c0ad40b5d6e462b6ae02b82 228 Gene3D G3DSA:3.30.160.100 3 102 4.8E-23 T 13-10-2018 IPR036567 Ribosome hibernation promotion factor-like RAM_41050 fa5838b04c0ad40b5d6e462b6ae02b82 228 Pfam PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus 170 224 6.9E-22 T 13-10-2018 IPR032528 Sigma 54 modulation/S30EA ribosomal protein, C-terminal RAM_41050 fa5838b04c0ad40b5d6e462b6ae02b82 228 Gene3D G3DSA:3.30.505.50 182 228 1.4E-17 T 13-10-2018 IPR038416 Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain superfamily RAM_41050 fa5838b04c0ad40b5d6e462b6ae02b82 228 Hamap MF_00839 Ribosome hibernation promoting factor [hpf]. 1 228 22.969 T 13-10-2018 IPR034694 Ribosome hibernation promoting factor, long/plastid RAM_41050 fa5838b04c0ad40b5d6e462b6ae02b82 228 SUPERFAMILY SSF69754 1 106 6.02E-24 T 13-10-2018 IPR036567 Ribosome hibernation promotion factor-like RAM_41050 fa5838b04c0ad40b5d6e462b6ae02b82 228 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 99 7.0E-20 T 13-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 RAM_15970 12820efdbf91ebb62d6f50d10dc774be 341 SUPERFAMILY SSF56112 7 312 2.55E-58 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_15970 12820efdbf91ebb62d6f50d10dc774be 341 Pfam PF01636 Phosphotransferase enzyme family 34 249 1.0E-49 T 13-10-2018 IPR002575 Aminoglycoside phosphotransferase RAM_15970 12820efdbf91ebb62d6f50d10dc774be 341 Gene3D G3DSA:3.30.200.20 8 110 7.5E-32 T 13-10-2018 RAM_15970 12820efdbf91ebb62d6f50d10dc774be 341 Gene3D G3DSA:3.90.1200.10 116 341 2.6E-69 T 13-10-2018 RAM_02380 183479be522ebf32b50435675a4e87af 267 SUPERFAMILY SSF51658 6 258 1.22E-42 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily RAM_02380 183479be522ebf32b50435675a4e87af 267 Gene3D G3DSA:3.20.20.150 3 258 2.7E-40 T 13-10-2018 RAM_02380 183479be522ebf32b50435675a4e87af 267 Pfam PF01261 Xylose isomerase-like TIM barrel 25 215 4.2E-19 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain RAM_19860 b82dd5dbcca1eb9a0be466286ad9a52e 466 Gene3D G3DSA:1.20.1250.20 271 464 5.0E-18 T 13-10-2018 RAM_19860 b82dd5dbcca1eb9a0be466286ad9a52e 466 Gene3D G3DSA:1.20.1720.10 2 239 6.8E-34 T 13-10-2018 RAM_19860 b82dd5dbcca1eb9a0be466286ad9a52e 466 ProSitePatterns PS00216 Sugar transport proteins signature 1. 56 72 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RAM_19860 b82dd5dbcca1eb9a0be466286ad9a52e 466 SUPERFAMILY SSF103473 201 462 1.44E-25 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_19860 b82dd5dbcca1eb9a0be466286ad9a52e 466 PRINTS PR01036 Tetracycline resistance protein TetB signature 128 152 3.4E-6 T 13-10-2018 RAM_19860 b82dd5dbcca1eb9a0be466286ad9a52e 466 PRINTS PR01036 Tetracycline resistance protein TetB signature 193 211 3.4E-6 T 13-10-2018 RAM_19860 b82dd5dbcca1eb9a0be466286ad9a52e 466 PRINTS PR01036 Tetracycline resistance protein TetB signature 65 87 3.4E-6 T 13-10-2018 RAM_19860 b82dd5dbcca1eb9a0be466286ad9a52e 466 SUPERFAMILY SSF103473 2 208 3.01E-29 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_19860 b82dd5dbcca1eb9a0be466286ad9a52e 466 Pfam PF07690 Major Facilitator Superfamily 6 422 3.0E-44 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_33280 ae0600773aca009cf5724eb76f20cd5b 443 Gene3D G3DSA:3.30.565.10 305 432 5.4E-29 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_33280 ae0600773aca009cf5724eb76f20cd5b 443 SUPERFAMILY SSF55874 317 432 3.29E-16 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_33280 ae0600773aca009cf5724eb76f20cd5b 443 SMART SM00387 337 434 0.0012 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_33280 ae0600773aca009cf5724eb76f20cd5b 443 Pfam PF07730 Histidine kinase 229 294 4.1E-17 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_19360 b8b7b4d2de97ab4b39dc7c224e1a5a4f 316 Pfam PF13560 Helix-turn-helix domain 5 84 7.3E-16 T 13-10-2018 RAM_19360 b8b7b4d2de97ab4b39dc7c224e1a5a4f 316 SUPERFAMILY SSF47413 19 78 1.33E-10 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_19360 b8b7b4d2de97ab4b39dc7c224e1a5a4f 316 SMART SM00530 9 81 3.2E-9 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_19360 b8b7b4d2de97ab4b39dc7c224e1a5a4f 316 Gene3D G3DSA:1.10.260.40 14 79 1.7E-9 T 13-10-2018 RAM_16550 a045a11222a8a5cca6956e5af6a1d8ef 313 Gene3D G3DSA:2.115.10.20 30 313 9.8E-52 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily RAM_16550 a045a11222a8a5cca6956e5af6a1d8ef 313 Pfam PF04616 Glycosyl hydrolases family 43 34 281 3.9E-31 T 13-10-2018 IPR006710 Glycoside hydrolase, family 43 GO:0004553|GO:0005975 RAM_16550 a045a11222a8a5cca6956e5af6a1d8ef 313 SUPERFAMILY SSF75005 16 308 3.28E-45 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily RAM_24220 d3e25dde6cc8a5d390d1dfcbccc3306c 408 SMART SM00530 8 64 1.5E-4 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_24220 d3e25dde6cc8a5d390d1dfcbccc3306c 408 Pfam PF13560 Helix-turn-helix domain 4 66 5.0E-10 T 13-10-2018 RAM_24220 d3e25dde6cc8a5d390d1dfcbccc3306c 408 SUPERFAMILY SSF52540 86 340 1.14E-17 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_24220 d3e25dde6cc8a5d390d1dfcbccc3306c 408 SUPERFAMILY SSF47413 3 60 3.56E-8 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_24220 d3e25dde6cc8a5d390d1dfcbccc3306c 408 Gene3D G3DSA:3.40.50.300 79 165 3.4E-8 T 13-10-2018 RAM_24220 d3e25dde6cc8a5d390d1dfcbccc3306c 408 Gene3D G3DSA:1.10.260.40 2 78 2.7E-11 T 13-10-2018 RAM_38595 71e6b4224afa0ed33429a4cb1de42efe 214 SUPERFAMILY SSF88946 33 134 1.96E-14 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_38595 71e6b4224afa0ed33429a4cb1de42efe 214 SUPERFAMILY SSF88659 140 210 2.06E-14 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_38595 71e6b4224afa0ed33429a4cb1de42efe 214 Pfam PF04542 Sigma-70 region 2 55 122 4.9E-8 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_38595 71e6b4224afa0ed33429a4cb1de42efe 214 Pfam PF04545 Sigma-70, region 4 158 206 7.4E-12 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 RAM_38595 71e6b4224afa0ed33429a4cb1de42efe 214 Gene3D G3DSA:1.10.1740.10 26 119 2.1E-11 T 13-10-2018 RAM_38595 71e6b4224afa0ed33429a4cb1de42efe 214 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 47 207 3.0E-23 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_38595 71e6b4224afa0ed33429a4cb1de42efe 214 Gene3D G3DSA:1.10.10.10 138 210 1.5E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_45875 35a75aecccd0e31d76082077f4da01cb 247 Pfam PF13672 Protein phosphatase 2C 19 214 2.1E-14 T 13-10-2018 RAM_45875 35a75aecccd0e31d76082077f4da01cb 247 SMART SM00331 14 245 5.5E-27 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_45875 35a75aecccd0e31d76082077f4da01cb 247 SUPERFAMILY SSF81606 7 245 4.71E-58 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_45875 35a75aecccd0e31d76082077f4da01cb 247 SMART SM00332 1 243 9.4E-16 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_45875 35a75aecccd0e31d76082077f4da01cb 247 Gene3D G3DSA:3.60.40.10 1 246 1.8E-60 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_30290 0309d986451afdd8a3e7069ff15ea67f 185 Pfam PF02441 Flavoprotein 6 151 2.9E-15 T 13-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 RAM_30290 0309d986451afdd8a3e7069ff15ea67f 185 SUPERFAMILY SSF52507 5 179 2.62E-18 T 13-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 RAM_30290 0309d986451afdd8a3e7069ff15ea67f 185 Gene3D G3DSA:3.40.50.1950 2 154 6.1E-19 T 13-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 RAM_19500 accea5e152fd87b0906b1276f5c82d9a 488 SUPERFAMILY SSF56801 11 482 4.71E-109 T 13-10-2018 RAM_19500 accea5e152fd87b0906b1276f5c82d9a 488 Pfam PF13193 AMP-binding enzyme C-terminal domain 399 475 7.6E-22 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_19500 accea5e152fd87b0906b1276f5c82d9a 488 Pfam PF00501 AMP-binding enzyme 20 390 3.8E-53 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_19500 accea5e152fd87b0906b1276f5c82d9a 488 Gene3D G3DSA:3.30.300.310 387 485 8.2E-33 T 13-10-2018 RAM_19500 accea5e152fd87b0906b1276f5c82d9a 488 ProSitePatterns PS00455 Putative AMP-binding domain signature. 158 169 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_19500 accea5e152fd87b0906b1276f5c82d9a 488 Gene3D G3DSA:3.40.50.12780 4 386 2.9E-69 T 13-10-2018 RAM_34685 80ddee234df9320b0b5d39ab8792cb26 276 Pfam PF03704 Bacterial transcriptional activator domain 98 230 3.6E-24 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_34685 80ddee234df9320b0b5d39ab8792cb26 276 SUPERFAMILY SSF48452 92 232 1.21E-16 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_34685 80ddee234df9320b0b5d39ab8792cb26 276 Gene3D G3DSA:1.10.10.10 1 91 4.4E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_34685 80ddee234df9320b0b5d39ab8792cb26 276 Pfam PF00486 Transcriptional regulatory protein, C terminal 24 77 1.4E-5 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_34685 80ddee234df9320b0b5d39ab8792cb26 276 SMART SM00862 16 89 3.4E-5 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_34685 80ddee234df9320b0b5d39ab8792cb26 276 SMART SM01043 95 239 6.0E-21 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_34685 80ddee234df9320b0b5d39ab8792cb26 276 SUPERFAMILY SSF46894 3 89 2.66E-8 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_34685 80ddee234df9320b0b5d39ab8792cb26 276 Gene3D G3DSA:1.25.40.10 94 235 5.2E-25 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_45650 d7fca269168b209da8a813fcdd570cd1 363 Gene3D G3DSA:3.40.50.300 1 336 1.2E-104 T 13-10-2018 RAM_45650 d7fca269168b209da8a813fcdd570cd1 363 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 234 300 4.3E-15 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RAM_45650 d7fca269168b209da8a813fcdd570cd1 363 Pfam PF00005 ABC transporter 31 182 1.2E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_45650 d7fca269168b209da8a813fcdd570cd1 363 SUPERFAMILY SSF52540 3 254 2.48E-72 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_45650 d7fca269168b209da8a813fcdd570cd1 363 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_45650 d7fca269168b209da8a813fcdd570cd1 363 SMART SM00382 39 232 7.6E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_45650 d7fca269168b209da8a813fcdd570cd1 363 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 233 322 1.4E-25 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RAM_26070 dde1fa54828175f90a369bb306a2f24d 330 PIRSF PIRSF036407 2 310 8.5E-102 T 13-10-2018 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 RAM_26070 dde1fa54828175f90a369bb306a2f24d 330 Pfam PF02769 AIR synthase related protein, C-terminal domain 170 307 1.4E-14 T 13-10-2018 IPR010918 PurM-like, C-terminal domain RAM_26070 dde1fa54828175f90a369bb306a2f24d 330 TIGRFAM TIGR00476 selD: selenide, water dikinase 4 308 1.8E-118 T 13-10-2018 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 RAM_26070 dde1fa54828175f90a369bb306a2f24d 330 SUPERFAMILY SSF55326 4 160 1.12E-39 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily RAM_26070 dde1fa54828175f90a369bb306a2f24d 330 SUPERFAMILY SSF56042 163 324 3.14E-33 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily RAM_26070 dde1fa54828175f90a369bb306a2f24d 330 Hamap MF_00625 Selenide, water dikinase [selD]. 2 330 37.315 T 13-10-2018 IPR023061 Selenophosphate synthetase, class I GO:0004756|GO:0005524|GO:0016260 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 RAM_26070 dde1fa54828175f90a369bb306a2f24d 330 Pfam PF00586 AIR synthase related protein, N-terminal domain 50 156 3.6E-19 T 13-10-2018 IPR016188 PurM-like, N-terminal domain RAM_26070 dde1fa54828175f90a369bb306a2f24d 330 Gene3D G3DSA:3.30.1330.10 2 162 4.5E-50 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily RAM_26070 dde1fa54828175f90a369bb306a2f24d 330 Gene3D G3DSA:3.90.650.10 164 313 7.7E-39 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily RAM_11210 153bda785053d92a0cf763f6fec71844 272 Gene3D G3DSA:1.10.760.10 13 136 2.6E-12 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 RAM_11210 153bda785053d92a0cf763f6fec71844 272 Gene3D G3DSA:1.10.760.10 139 231 2.4E-15 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 RAM_11210 153bda785053d92a0cf763f6fec71844 272 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 153 226 2.0E-13 T 13-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_11210 153bda785053d92a0cf763f6fec71844 272 SUPERFAMILY SSF46626 25 138 3.53E-18 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 RAM_11210 153bda785053d92a0cf763f6fec71844 272 Pfam PF00034 Cytochrome c 61 133 1.2E-7 T 13-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_11210 153bda785053d92a0cf763f6fec71844 272 SUPERFAMILY SSF46626 139 228 2.44E-28 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 RAM_11210 153bda785053d92a0cf763f6fec71844 272 PIRSF PIRSF000007 1 272 2.6E-115 T 13-10-2018 IPR009152 Cytochrome bc1 complex, cytochrome c subunit GO:0005506|GO:0009055|GO:0016021|GO:0020037 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 RAM_03895 5af7cf0b75885df3e4c97ef59650f4e0 106 Pfam PF02467 Transcription factor WhiB 23 93 1.1E-22 T 13-10-2018 IPR034768 WhiB-like iron-sulfur binding domain RAM_03895 5af7cf0b75885df3e4c97ef59650f4e0 106 Hamap MF_01479 Transcriptional regulator WhiB [whiB]. 20 100 18.221 T 13-10-2018 IPR003482 Transcription factor WhiB RAM_36200 87db41eb232a2051755fba7b0e6d6adb 375 Gene3D G3DSA:3.40.50.150 204 375 3.2E-59 T 13-10-2018 RAM_36200 87db41eb232a2051755fba7b0e6d6adb 375 TIGRFAM TIGR02467 CbiE: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit 1 177 9.4E-33 T 13-10-2018 IPR012818 Cobalamin (vitamin B12) biosynthesis CbiE, precorrin-6Y methyltransferase GO:0008276|GO:0009236 RAM_36200 87db41eb232a2051755fba7b0e6d6adb 375 SUPERFAMILY SSF53335 200 366 2.82E-19 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_36200 87db41eb232a2051755fba7b0e6d6adb 375 PIRSF PIRSF036428 1 375 4.2E-107 T 13-10-2018 IPR006365 Cobalamin (vitamin B12) biosynthesis CobL/Precorrin-6Y C(5,15)-methyltransferase GO:0008276|GO:0009236 KEGG: 00860+2.1.1.132 RAM_36200 87db41eb232a2051755fba7b0e6d6adb 375 Gene3D G3DSA:3.40.1010.10 1 96 2.1E-13 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 RAM_36200 87db41eb232a2051755fba7b0e6d6adb 375 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 1 173 9.4E-18 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 RAM_36200 87db41eb232a2051755fba7b0e6d6adb 375 TIGRFAM TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit 210 311 4.0E-27 T 13-10-2018 IPR014008 Cobalamin biosynthesis, precorrin-6Y methyltransferase, CbiT subunit GO:0008276|GO:0009236 KEGG: 00860+2.1.1.196|MetaCyc: PWY-7377 RAM_36200 87db41eb232a2051755fba7b0e6d6adb 375 SUPERFAMILY SSF53790 1 180 2.22E-28 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 RAM_44390 02da232dfb266d5fe8a21a5f74fed5b1 445 Gene3D G3DSA:1.10.287.130 180 295 4.5E-26 T 13-10-2018 RAM_44390 02da232dfb266d5fe8a21a5f74fed5b1 445 SUPERFAMILY SSF158472 179 226 2.48E-5 T 13-10-2018 RAM_44390 02da232dfb266d5fe8a21a5f74fed5b1 445 SMART SM00304 176 229 1.7E-7 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_44390 02da232dfb266d5fe8a21a5f74fed5b1 445 PRINTS PR00344 Bacterial sensor protein C-terminal signature 389 399 2.6E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_44390 02da232dfb266d5fe8a21a5f74fed5b1 445 PRINTS PR00344 Bacterial sensor protein C-terminal signature 371 385 2.6E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_44390 02da232dfb266d5fe8a21a5f74fed5b1 445 PRINTS PR00344 Bacterial sensor protein C-terminal signature 430 443 2.6E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_44390 02da232dfb266d5fe8a21a5f74fed5b1 445 PRINTS PR00344 Bacterial sensor protein C-terminal signature 407 425 2.6E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_44390 02da232dfb266d5fe8a21a5f74fed5b1 445 SMART SM00388 230 295 9.2E-11 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_44390 02da232dfb266d5fe8a21a5f74fed5b1 445 SMART SM00387 336 445 5.7E-32 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_44390 02da232dfb266d5fe8a21a5f74fed5b1 445 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 337 444 9.6E-23 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_44390 02da232dfb266d5fe8a21a5f74fed5b1 445 SUPERFAMILY SSF55874 285 444 5.11E-34 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_44390 02da232dfb266d5fe8a21a5f74fed5b1 445 Pfam PF00512 His Kinase A (phospho-acceptor) domain 231 293 1.1E-10 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_44390 02da232dfb266d5fe8a21a5f74fed5b1 445 SUPERFAMILY SSF47384 213 295 5.69E-16 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RAM_44390 02da232dfb266d5fe8a21a5f74fed5b1 445 Gene3D G3DSA:3.30.565.10 303 445 3.4E-34 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_00125 02e0e0d0ca9220bc2206c3c3591f95d5 311 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_00125 02e0e0d0ca9220bc2206c3c3591f95d5 311 Gene3D G3DSA:3.40.50.300 2 231 9.9E-64 T 13-10-2018 RAM_00125 02e0e0d0ca9220bc2206c3c3591f95d5 311 Pfam PF00005 ABC transporter 21 162 1.7E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_00125 02e0e0d0ca9220bc2206c3c3591f95d5 311 TIGRFAM TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein 13 303 1.7E-96 T 13-10-2018 IPR005894 Daunorubicin resistance ABC transporter ATP-binding subunit DrrA GO:0005524|GO:0043215|GO:1900753 RAM_00125 02e0e0d0ca9220bc2206c3c3591f95d5 311 SMART SM00382 30 211 1.5E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_00125 02e0e0d0ca9220bc2206c3c3591f95d5 311 SUPERFAMILY SSF52540 3 226 1.78E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_27895 d9635ce1621e6fde61abdaec79c1ce07 285 Gene3D G3DSA:3.40.109.10 69 280 2.7E-54 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RAM_27895 d9635ce1621e6fde61abdaec79c1ce07 285 Gene3D G3DSA:3.40.109.10 1 63 3.7E-16 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RAM_27895 d9635ce1621e6fde61abdaec79c1ce07 285 SUPERFAMILY SSF55469 76 277 1.51E-9 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RAM_27895 d9635ce1621e6fde61abdaec79c1ce07 285 Pfam PF00881 Nitroreductase family 80 249 2.7E-8 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 RAM_16165 612ebf903fbb726b1b12d2c4f10f0b57 316 SUPERFAMILY SSF46785 5 62 2.91E-11 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_16165 612ebf903fbb726b1b12d2c4f10f0b57 316 Pfam PF08279 HTH domain 7 61 8.8E-17 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 RAM_16165 612ebf903fbb726b1b12d2c4f10f0b57 316 PIRSF PIRSF016838 2 315 6.7E-21 T 13-10-2018 IPR028349 Protein PafC RAM_16165 612ebf903fbb726b1b12d2c4f10f0b57 316 ProSitePatterns PS00894 DeoR-type HTH domain signature. 7 41 - T 13-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 RAM_16165 612ebf903fbb726b1b12d2c4f10f0b57 316 Pfam PF13280 WYL domain 140 311 5.5E-30 T 13-10-2018 IPR026881 WYL domain RAM_16165 612ebf903fbb726b1b12d2c4f10f0b57 316 Gene3D G3DSA:1.10.10.10 1 64 1.1E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_16000 e3aa002bc124f27110166337c8144183 669 SUPERFAMILY SSF161098 75 314 3.14E-57 T 13-10-2018 IPR035906 MetI-like superfamily RAM_16000 e3aa002bc124f27110166337c8144183 669 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 483 653 1.4E-16 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_16000 e3aa002bc124f27110166337c8144183 669 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 106 317 1.7E-20 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_16000 e3aa002bc124f27110166337c8144183 669 Gene3D G3DSA:1.10.3720.10 71 324 5.4E-67 T 13-10-2018 IPR035906 MetI-like superfamily RAM_16000 e3aa002bc124f27110166337c8144183 669 SUPERFAMILY SSF161098 403 669 4.58E-71 T 13-10-2018 IPR035906 MetI-like superfamily RAM_16000 e3aa002bc124f27110166337c8144183 669 Gene3D G3DSA:1.10.3720.10 396 656 2.6E-63 T 13-10-2018 IPR035906 MetI-like superfamily RAM_16790 8e1e504f7dfd3fedfa44848e4361b383 385 Gene3D G3DSA:1.10.10.60 7 58 4.7E-20 T 13-10-2018 RAM_16790 8e1e504f7dfd3fedfa44848e4361b383 385 ProSitePatterns PS01081 TetR-type HTH domain signature. 30 60 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RAM_16790 8e1e504f7dfd3fedfa44848e4361b383 385 Pfam PF00440 Bacterial regulatory proteins, tetR family 210 256 1.1E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_16790 8e1e504f7dfd3fedfa44848e4361b383 385 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 64 1.7E-18 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_16790 8e1e504f7dfd3fedfa44848e4361b383 385 Gene3D G3DSA:1.10.357.10 252 384 2.4E-24 T 13-10-2018 RAM_16790 8e1e504f7dfd3fedfa44848e4361b383 385 Gene3D G3DSA:1.10.357.10 59 189 1.6E-14 T 13-10-2018 RAM_16790 8e1e504f7dfd3fedfa44848e4361b383 385 Gene3D G3DSA:1.10.10.60 199 251 2.1E-12 T 13-10-2018 RAM_16790 8e1e504f7dfd3fedfa44848e4361b383 385 SUPERFAMILY SSF46689 10 81 1.1E-19 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_16790 8e1e504f7dfd3fedfa44848e4361b383 385 SUPERFAMILY SSF48498 277 356 1.11E-5 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_16790 8e1e504f7dfd3fedfa44848e4361b383 385 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 2.1E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_16790 8e1e504f7dfd3fedfa44848e4361b383 385 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 2.1E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_16790 8e1e504f7dfd3fedfa44848e4361b383 385 SUPERFAMILY SSF46689 200 280 1.28E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_42635 495577b441af01672c29345104321da3 576 Pfam PF10592 AIPR protein 258 523 1.3E-44 T 13-10-2018 IPR018891 Abortive bacteriophage infection, resistance RAM_20730 70356cb374fdf8e69a8e513a2893423f 619 Gene3D G3DSA:2.60.40.2030 303 437 3.2E-27 T 13-10-2018 IPR038081 CalX-like domain superfamily RAM_20730 70356cb374fdf8e69a8e513a2893423f 619 Pfam PF03160 Calx-beta domain 308 402 3.8E-18 T 13-10-2018 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 RAM_20730 70356cb374fdf8e69a8e513a2893423f 619 SMART SM00237 304 402 3.2E-10 T 13-10-2018 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 RAM_20730 70356cb374fdf8e69a8e513a2893423f 619 Gene3D G3DSA:3.40.50.410 54 239 2.2E-12 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RAM_20730 70356cb374fdf8e69a8e513a2893423f 619 SUPERFAMILY SSF53300 56 233 8.74E-16 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RAM_20730 70356cb374fdf8e69a8e513a2893423f 619 SUPERFAMILY SSF141072 310 427 9.94E-32 T 13-10-2018 IPR038081 CalX-like domain superfamily RAM_20730 70356cb374fdf8e69a8e513a2893423f 619 Pfam PF00092 von Willebrand factor type A domain 56 216 4.9E-6 T 13-10-2018 IPR002035 von Willebrand factor, type A RAM_17085 551fec50a69611734a8ba38b89cad19c 540 ProSitePatterns PS00455 Putative AMP-binding domain signature. 203 214 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_17085 551fec50a69611734a8ba38b89cad19c 540 Pfam PF00501 AMP-binding enzyme 50 444 6.4E-79 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_17085 551fec50a69611734a8ba38b89cad19c 540 Gene3D G3DSA:1.10.10.2900 272 338 3.3E-11 T 13-10-2018 RAM_17085 551fec50a69611734a8ba38b89cad19c 540 SUPERFAMILY SSF56801 28 540 8.9E-131 T 13-10-2018 RAM_17085 551fec50a69611734a8ba38b89cad19c 540 Pfam PF13193 AMP-binding enzyme C-terminal domain 453 531 1.8E-21 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_17085 551fec50a69611734a8ba38b89cad19c 540 Gene3D G3DSA:3.40.50.980 34 271 6.1E-50 T 13-10-2018 RAM_17085 551fec50a69611734a8ba38b89cad19c 540 Gene3D G3DSA:2.30.38.10 340 444 1.7E-28 T 13-10-2018 RAM_17085 551fec50a69611734a8ba38b89cad19c 540 Gene3D G3DSA:3.30.300.310 445 540 2.4E-29 T 13-10-2018 RAM_29280 f92e39ef1c0baca6c417c69041f13511 164 SUPERFAMILY SSF46785 13 148 3.63E-26 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_29280 f92e39ef1c0baca6c417c69041f13511 164 SMART SM00347 35 135 4.0E-20 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_29280 f92e39ef1c0baca6c417c69041f13511 164 Gene3D G3DSA:1.10.10.10 2 150 5.5E-36 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_29280 f92e39ef1c0baca6c417c69041f13511 164 Pfam PF01047 MarR family 42 100 7.2E-15 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_29280 f92e39ef1c0baca6c417c69041f13511 164 PRINTS PR00598 Bacterial regulatory protein MarR family signature 95 111 9.7E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_29280 f92e39ef1c0baca6c417c69041f13511 164 PRINTS PR00598 Bacterial regulatory protein MarR family signature 76 91 9.7E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_29280 f92e39ef1c0baca6c417c69041f13511 164 PRINTS PR00598 Bacterial regulatory protein MarR family signature 59 75 9.7E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_08760 dcb8eed6e17471c413651bd9589e4c93 261 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 1.7E-13 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RAM_08760 dcb8eed6e17471c413651bd9589e4c93 261 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 1.7E-13 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RAM_08760 dcb8eed6e17471c413651bd9589e4c93 261 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 1.7E-13 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RAM_08760 dcb8eed6e17471c413651bd9589e4c93 261 Pfam PF00216 Bacterial DNA-binding protein 3 89 7.6E-24 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RAM_08760 dcb8eed6e17471c413651bd9589e4c93 261 Gene3D G3DSA:4.10.520.10 2 99 3.6E-29 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 RAM_08760 dcb8eed6e17471c413651bd9589e4c93 261 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 13-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 RAM_08760 dcb8eed6e17471c413651bd9589e4c93 261 SUPERFAMILY SSF47729 3 93 8.39E-24 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 RAM_08760 dcb8eed6e17471c413651bd9589e4c93 261 SMART SM00411 2 90 1.0E-30 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RAM_24530 ce4e9849dd2c274c89fbdb549c21bcf6 443 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 382 391 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RAM_24530 ce4e9849dd2c274c89fbdb549c21bcf6 443 Gene3D G3DSA:1.10.630.10 2 442 5.6E-122 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_24530 ce4e9849dd2c274c89fbdb549c21bcf6 443 PRINTS PR00463 E-class P450 group I signature 389 412 5.6E-24 T 13-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_24530 ce4e9849dd2c274c89fbdb549c21bcf6 443 PRINTS PR00463 E-class P450 group I signature 344 368 5.6E-24 T 13-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_24530 ce4e9849dd2c274c89fbdb549c21bcf6 443 PRINTS PR00463 E-class P450 group I signature 379 389 5.6E-24 T 13-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_24530 ce4e9849dd2c274c89fbdb549c21bcf6 443 PRINTS PR00463 E-class P450 group I signature 30 49 5.6E-24 T 13-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_24530 ce4e9849dd2c274c89fbdb549c21bcf6 443 PRINTS PR00463 E-class P450 group I signature 263 289 5.6E-24 T 13-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_24530 ce4e9849dd2c274c89fbdb549c21bcf6 443 PRINTS PR00463 E-class P450 group I signature 243 260 5.6E-24 T 13-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_24530 ce4e9849dd2c274c89fbdb549c21bcf6 443 Pfam PF00067 Cytochrome P450 31 421 3.5E-78 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_24530 ce4e9849dd2c274c89fbdb549c21bcf6 443 SUPERFAMILY SSF48264 7 440 4.06E-104 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_24530 ce4e9849dd2c274c89fbdb549c21bcf6 443 PRINTS PR00385 P450 superfamily signature 306 317 4.2E-13 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_24530 ce4e9849dd2c274c89fbdb549c21bcf6 443 PRINTS PR00385 P450 superfamily signature 380 389 4.2E-13 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_24530 ce4e9849dd2c274c89fbdb549c21bcf6 443 PRINTS PR00385 P450 superfamily signature 389 400 4.2E-13 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_24530 ce4e9849dd2c274c89fbdb549c21bcf6 443 PRINTS PR00385 P450 superfamily signature 254 271 4.2E-13 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_24690 6a30054c971cf1811d33e5640b50225d 471 SUPERFAMILY SSF51556 59 355 1.2E-54 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_24690 6a30054c971cf1811d33e5640b50225d 471 Pfam PF01979 Amidohydrolase family 56 406 3.0E-30 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RAM_24690 6a30054c971cf1811d33e5640b50225d 471 SUPERFAMILY SSF51338 4 431 1.81E-27 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_24690 6a30054c971cf1811d33e5640b50225d 471 Gene3D G3DSA:2.30.40.10 12 412 2.9E-105 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_24690 6a30054c971cf1811d33e5640b50225d 471 Gene3D G3DSA:3.20.20.140 61 417 2.9E-105 T 13-10-2018 RAM_27965 e85dca5fb0f0d7942aca9be19ce10a52 61 Gene3D G3DSA:3.30.590.20 3 61 2.4E-10 T 13-10-2018 RAM_27965 e85dca5fb0f0d7942aca9be19ce10a52 61 SUPERFAMILY SSF55931 6 60 4.02E-7 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 RAM_27135 e11bf90c0c2a4f895a6feece7bb7e5cc 661 SMART SM00863 170 226 2.0E-21 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 RAM_27135 e11bf90c0c2a4f895a6feece7bb7e5cc 661 PRINTS PR01047 Threonyl-tRNA synthetase signature 475 503 1.1E-47 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RAM_27135 e11bf90c0c2a4f895a6feece7bb7e5cc 661 PRINTS PR01047 Threonyl-tRNA synthetase signature 371 394 1.1E-47 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RAM_27135 e11bf90c0c2a4f895a6feece7bb7e5cc 661 PRINTS PR01047 Threonyl-tRNA synthetase signature 545 557 1.1E-47 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RAM_27135 e11bf90c0c2a4f895a6feece7bb7e5cc 661 PRINTS PR01047 Threonyl-tRNA synthetase signature 338 366 1.1E-47 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RAM_27135 e11bf90c0c2a4f895a6feece7bb7e5cc 661 PRINTS PR01047 Threonyl-tRNA synthetase signature 518 531 1.1E-47 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RAM_27135 e11bf90c0c2a4f895a6feece7bb7e5cc 661 Gene3D G3DSA:3.30.54.20 122 194 1.5E-57 T 13-10-2018 RAM_27135 e11bf90c0c2a4f895a6feece7bb7e5cc 661 SUPERFAMILY SSF55186 56 247 4.84E-53 T 13-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 RAM_27135 e11bf90c0c2a4f895a6feece7bb7e5cc 661 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 333 540 5.0E-35 T 13-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 RAM_27135 e11bf90c0c2a4f895a6feece7bb7e5cc 661 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 177 226 5.2E-14 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 RAM_27135 e11bf90c0c2a4f895a6feece7bb7e5cc 661 Gene3D G3DSA:3.30.980.10 61 229 1.5E-57 T 13-10-2018 RAM_27135 e11bf90c0c2a4f895a6feece7bb7e5cc 661 SUPERFAMILY SSF52954 540 647 3.02E-28 T 13-10-2018 RAM_27135 e11bf90c0c2a4f895a6feece7bb7e5cc 661 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 58 645 32.664 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RAM_27135 e11bf90c0c2a4f895a6feece7bb7e5cc 661 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 64 640 1.1E-191 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RAM_27135 e11bf90c0c2a4f895a6feece7bb7e5cc 661 Pfam PF03129 Anticodon binding domain 552 641 3.0E-18 T 13-10-2018 IPR004154 Anticodon-binding RAM_27135 e11bf90c0c2a4f895a6feece7bb7e5cc 661 Gene3D G3DSA:3.30.930.10 234 543 3.2E-111 T 13-10-2018 RAM_27135 e11bf90c0c2a4f895a6feece7bb7e5cc 661 Gene3D G3DSA:3.40.50.800 544 654 1.0E-24 T 13-10-2018 IPR036621 Anticodon-binding domain superfamily RAM_27135 e11bf90c0c2a4f895a6feece7bb7e5cc 661 SUPERFAMILY SSF55681 250 536 7.76E-88 T 13-10-2018 RAM_46040 c591acef8ace2fb9b8880f9ad0442f5c 289 SMART SM01130 1 287 1.1E-51 T 13-10-2018 IPR002220 DapA-like GO:0016829 RAM_46040 c591acef8ace2fb9b8880f9ad0442f5c 289 Pfam PF00701 Dihydrodipicolinate synthetase family 2 284 1.9E-39 T 13-10-2018 IPR002220 DapA-like GO:0016829 RAM_46040 c591acef8ace2fb9b8880f9ad0442f5c 289 Gene3D G3DSA:3.20.20.70 1 289 1.9E-79 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_46040 c591acef8ace2fb9b8880f9ad0442f5c 289 PIRSF PIRSF001365 1 289 1.3E-55 T 13-10-2018 IPR002220 DapA-like GO:0016829 RAM_46040 c591acef8ace2fb9b8880f9ad0442f5c 289 SUPERFAMILY SSF51569 1 289 4.08E-60 T 13-10-2018 RAM_35330 400e47ba54f5e7f5ffcdf51a2a3ee5b0 201 SMART SM00448 2 115 2.0E-19 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_35330 400e47ba54f5e7f5ffcdf51a2a3ee5b0 201 SUPERFAMILY SSF52172 2 127 6.69E-25 T 13-10-2018 IPR011006 CheY-like superfamily RAM_35330 400e47ba54f5e7f5ffcdf51a2a3ee5b0 201 Gene3D G3DSA:3.40.50.12740 2 200 1.2E-52 T 13-10-2018 RAM_35330 400e47ba54f5e7f5ffcdf51a2a3ee5b0 201 Pfam PF00072 Response regulator receiver domain 4 115 7.6E-20 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_35330 400e47ba54f5e7f5ffcdf51a2a3ee5b0 201 SUPERFAMILY SSF46894 128 200 9.18E-19 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_35330 400e47ba54f5e7f5ffcdf51a2a3ee5b0 201 Pfam PF00196 Bacterial regulatory proteins, luxR family 140 195 8.7E-18 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_35330 400e47ba54f5e7f5ffcdf51a2a3ee5b0 201 SMART SM00421 138 195 1.2E-23 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_35330 400e47ba54f5e7f5ffcdf51a2a3ee5b0 201 ProSitePatterns PS00622 LuxR-type HTH domain signature. 155 182 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_35330 400e47ba54f5e7f5ffcdf51a2a3ee5b0 201 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 155 171 5.0E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_35330 400e47ba54f5e7f5ffcdf51a2a3ee5b0 201 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 171 183 5.0E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_35330 400e47ba54f5e7f5ffcdf51a2a3ee5b0 201 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 141 155 5.0E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_37685 73d18a4ad4d799441af4cec6d51704a2 290 Pfam PF13460 NAD(P)H-binding 6 188 3.4E-25 T 13-10-2018 IPR016040 NAD(P)-binding domain RAM_37685 73d18a4ad4d799441af4cec6d51704a2 290 Gene3D G3DSA:3.40.50.720 3 271 5.4E-67 T 13-10-2018 RAM_37685 73d18a4ad4d799441af4cec6d51704a2 290 Gene3D G3DSA:3.90.25.10 140 273 5.4E-67 T 13-10-2018 RAM_37685 73d18a4ad4d799441af4cec6d51704a2 290 SUPERFAMILY SSF51735 2 234 1.01E-50 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_25260 9b6c4a002eda19a7f9e9507c5c387df0 251 TIGRFAM TIGR03442 TIGR03442: ergothioneine biosynthesis protein EgtC 1 245 3.0E-77 T 13-10-2018 IPR017808 Ergothioneine biosynthesis protein EgtC GO:0052699 RAM_25260 9b6c4a002eda19a7f9e9507c5c387df0 251 Gene3D G3DSA:3.60.20.10 2 251 1.6E-78 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RAM_25260 9b6c4a002eda19a7f9e9507c5c387df0 251 Pfam PF13522 Glutamine amidotransferase domain 77 217 3.9E-15 T 13-10-2018 RAM_25260 9b6c4a002eda19a7f9e9507c5c387df0 251 Hamap MF_02036 Gamma-glutamyl-hercynylcysteine sulfoxide hydrolase [egtC]. 1 246 39.024 T 13-10-2018 IPR032889 Gamma-glutamyl-hercynylcysteine sulfoxide hydrolase, Actinobacteria GO:0016811|GO:0052699 KEGG: 00340+3.5.1.118|MetaCyc: PWY-7255 RAM_25260 9b6c4a002eda19a7f9e9507c5c387df0 251 SUPERFAMILY SSF56235 2 242 6.95E-19 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RAM_27000 3c4c680400b10d63e9fece750144365c 198 Pfam PF01330 RuvA N terminal domain 1 61 4.8E-19 T 13-10-2018 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 RAM_27000 3c4c680400b10d63e9fece750144365c 198 Gene3D G3DSA:2.40.50.140 1 64 4.2E-26 T 13-10-2018 RAM_27000 3c4c680400b10d63e9fece750144365c 198 Gene3D G3DSA:1.10.150.20 67 136 1.3E-20 T 13-10-2018 RAM_27000 3c4c680400b10d63e9fece750144365c 198 Pfam PF07499 RuvA, C-terminal domain 149 194 1.5E-12 T 13-10-2018 IPR011114 Holliday junction DNA helicase RuvA, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 RAM_27000 3c4c680400b10d63e9fece750144365c 198 SUPERFAMILY SSF46929 149 197 1.03E-9 T 13-10-2018 IPR036267 RuvA, C-terminal domain superfamily RAM_27000 3c4c680400b10d63e9fece750144365c 198 SUPERFAMILY SSF50249 1 62 5.14E-14 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_27000 3c4c680400b10d63e9fece750144365c 198 Gene3D G3DSA:1.10.8.10 137 198 6.6E-18 T 13-10-2018 RAM_27000 3c4c680400b10d63e9fece750144365c 198 Pfam PF14520 Helix-hairpin-helix domain 71 129 4.5E-13 T 13-10-2018 RAM_27000 3c4c680400b10d63e9fece750144365c 198 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 195 28.473 T 13-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 RAM_27000 3c4c680400b10d63e9fece750144365c 198 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 177 2.1E-39 T 13-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 RAM_27000 3c4c680400b10d63e9fece750144365c 198 SUPERFAMILY SSF47781 65 134 3.38E-18 T 13-10-2018 IPR010994 RuvA domain 2-like RAM_11510 e14047ec7012eb90b4ed97e3d19af768 177 Hamap MF_00299 Probable RNA 2'-phosphotransferase [kptA]. 5 173 30.12 T 13-10-2018 IPR022928 RNA 2'-phosphotransferase KptA, putative GO:0016773 RAM_11510 e14047ec7012eb90b4ed97e3d19af768 177 Gene3D G3DSA:1.10.10.970 6 73 8.6E-13 T 13-10-2018 RAM_11510 e14047ec7012eb90b4ed97e3d19af768 177 Gene3D G3DSA:3.20.170.30 93 177 7.0E-29 T 13-10-2018 RAM_11510 e14047ec7012eb90b4ed97e3d19af768 177 SUPERFAMILY SSF56399 8 173 7.48E-55 T 13-10-2018 RAM_11510 e14047ec7012eb90b4ed97e3d19af768 177 Pfam PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family 6 166 5.1E-39 T 13-10-2018 IPR002745 Phosphotransferase KptA/Tpt1 GO:0006388|GO:0016772 RAM_13625 8910c37be92615a5c9bbbc1c2aa719f3 294 Gene3D G3DSA:3.40.50.720 3 290 2.2E-76 T 13-10-2018 RAM_13625 8910c37be92615a5c9bbbc1c2aa719f3 294 PIRSF PIRSF000189 1 294 8.7E-70 T 13-10-2018 IPR023209 D-amino-acid oxidase GO:0003884|GO:0046416|GO:0071949 Reactome: R-HSA-389661|Reactome: R-HSA-9033241 RAM_13625 8910c37be92615a5c9bbbc1c2aa719f3 294 Gene3D G3DSA:3.30.9.10 76 254 2.2E-76 T 13-10-2018 RAM_13625 8910c37be92615a5c9bbbc1c2aa719f3 294 Pfam PF01266 FAD dependent oxidoreductase 3 290 1.2E-36 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RAM_13625 8910c37be92615a5c9bbbc1c2aa719f3 294 SUPERFAMILY SSF54373 168 255 3.79E-18 T 13-10-2018 RAM_13625 8910c37be92615a5c9bbbc1c2aa719f3 294 SUPERFAMILY SSF51971 1 292 3.3E-30 T 13-10-2018 RAM_15255 fa87ba069b577c3b7489586976f2b545 293 Gene3D G3DSA:3.40.50.300 24 208 7.4E-28 T 13-10-2018 RAM_15255 fa87ba069b577c3b7489586976f2b545 293 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 41 190 1.5E-10 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RAM_15255 fa87ba069b577c3b7489586976f2b545 293 SUPERFAMILY SSF52540 35 276 5.21E-35 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_15255 fa87ba069b577c3b7489586976f2b545 293 SMART SM00382 37 201 5.0E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_31240 9c5516fd9ef5d8537e86aa4fa13f0d8b 1010 Gene3D G3DSA:2.60.120.260 22 204 8.4E-52 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_31240 9c5516fd9ef5d8537e86aa4fa13f0d8b 1010 SUPERFAMILY SSF49303 756 873 7.19E-34 T 13-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily RAM_31240 9c5516fd9ef5d8537e86aa4fa13f0d8b 1010 Gene3D G3DSA:2.60.40.10 206 313 2.4E-27 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_31240 9c5516fd9ef5d8537e86aa4fa13f0d8b 1010 SUPERFAMILY SSF49785 886 1009 1.08E-25 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_31240 9c5516fd9ef5d8537e86aa4fa13f0d8b 1010 Gene3D G3DSA:2.60.120.260 884 1010 1.0E-38 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_31240 9c5516fd9ef5d8537e86aa4fa13f0d8b 1010 SUPERFAMILY SSF51445 310 651 5.63E-76 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_31240 9c5516fd9ef5d8537e86aa4fa13f0d8b 1010 Gene3D G3DSA:2.60.40.10 653 773 7.9E-42 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_31240 9c5516fd9ef5d8537e86aa4fa13f0d8b 1010 SUPERFAMILY SSF49303 653 753 2.01E-28 T 13-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily RAM_31240 9c5516fd9ef5d8537e86aa4fa13f0d8b 1010 Gene3D G3DSA:3.20.20.80 315 652 5.3E-85 T 13-10-2018 RAM_31240 9c5516fd9ef5d8537e86aa4fa13f0d8b 1010 SUPERFAMILY SSF49303 206 313 2.16E-23 T 13-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily RAM_31240 9c5516fd9ef5d8537e86aa4fa13f0d8b 1010 SUPERFAMILY SSF49785 45 200 5.1E-38 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_31240 9c5516fd9ef5d8537e86aa4fa13f0d8b 1010 Pfam PF03422 Carbohydrate binding module (family 6) 890 1008 6.0E-9 T 13-10-2018 IPR005084 Carbohydrate binding module family 6 GO:0030246 RAM_31240 9c5516fd9ef5d8537e86aa4fa13f0d8b 1010 Pfam PF00703 Glycosyl hydrolases family 2 212 313 1.3E-10 T 13-10-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RAM_31240 9c5516fd9ef5d8537e86aa4fa13f0d8b 1010 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 88 169 1.8E-7 T 13-10-2018 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_31240 9c5516fd9ef5d8537e86aa4fa13f0d8b 1010 Gene3D G3DSA:2.60.40.10 775 876 4.0E-38 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_40520 0e10339154c0b250e197aa6e8e96d1ff 271 Gene3D G3DSA:3.40.50.150 1 267 1.5E-99 T 13-10-2018 RAM_40520 0e10339154c0b250e197aa6e8e96d1ff 271 SUPERFAMILY SSF53335 11 248 2.5E-40 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_40520 0e10339154c0b250e197aa6e8e96d1ff 271 PIRSF PIRSF017393 1 267 7.9E-91 T 13-10-2018 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type RAM_40520 0e10339154c0b250e197aa6e8e96d1ff 271 Pfam PF04672 S-adenosyl methyltransferase 5 266 3.5E-86 T 13-10-2018 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type RAM_45865 d3c47207fa08537a052b311d7064de6e 296 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 126 138 - T 13-10-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 RAM_45865 d3c47207fa08537a052b311d7064de6e 296 SMART SM00220 7 265 1.6E-53 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_45865 d3c47207fa08537a052b311d7064de6e 296 Gene3D G3DSA:1.10.510.10 89 264 1.4E-46 T 13-10-2018 RAM_45865 d3c47207fa08537a052b311d7064de6e 296 SUPERFAMILY SSF56112 4 258 5.13E-72 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_45865 d3c47207fa08537a052b311d7064de6e 296 PIRSF PIRSF000654 20 264 2.9E-20 T 13-10-2018 RAM_45865 d3c47207fa08537a052b311d7064de6e 296 Gene3D G3DSA:3.30.200.20 1 88 4.6E-24 T 13-10-2018 RAM_45865 d3c47207fa08537a052b311d7064de6e 296 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 14 37 - T 13-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 RAM_45865 d3c47207fa08537a052b311d7064de6e 296 Pfam PF00069 Protein kinase domain 13 252 9.4E-47 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_32585 6d9e3a170a9c50134d4f8ad7102fe4b9 514 SUPERFAMILY SSF53474 28 300 1.45E-36 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_32585 6d9e3a170a9c50134d4f8ad7102fe4b9 514 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 53 148 1.6E-14 T 13-10-2018 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 RAM_32585 6d9e3a170a9c50134d4f8ad7102fe4b9 514 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 167 250 3.7E-8 T 13-10-2018 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 RAM_32585 6d9e3a170a9c50134d4f8ad7102fe4b9 514 Gene3D G3DSA:3.40.50.1820 37 313 2.4E-56 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_32585 6d9e3a170a9c50134d4f8ad7102fe4b9 514 SUPERFAMILY SSF49785 266 498 1.3E-24 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_32585 6d9e3a170a9c50134d4f8ad7102fe4b9 514 Pfam PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain 277 499 3.3E-30 T 13-10-2018 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 RAM_32585 6d9e3a170a9c50134d4f8ad7102fe4b9 514 SMART SM00939 265 506 5.0E-34 T 13-10-2018 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 RAM_32240 b66c60c58c90592be08e0106bc88b10d 144 Gene3D G3DSA:1.20.90.10 30 144 7.9E-41 T 13-10-2018 IPR036444 Phospholipase A2 domain superfamily GO:0004623|GO:0006644|GO:0050482 KEGG: 00564+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 RAM_32240 b66c60c58c90592be08e0106bc88b10d 144 Pfam PF09056 Prokaryotic phospholipase A2 38 143 5.6E-41 T 13-10-2018 IPR015141 Phospholipase A2, prokaryotic/fungal RAM_32240 b66c60c58c90592be08e0106bc88b10d 144 SUPERFAMILY SSF48619 32 143 2.05E-33 T 13-10-2018 IPR036444 Phospholipase A2 domain superfamily GO:0004623|GO:0006644|GO:0050482 KEGG: 00564+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 RAM_06865 967d27a6d6c397d40f09c03179c7cb2e 215 SUPERFAMILY SSF144091 19 197 9.29E-28 T 13-10-2018 RAM_06865 967d27a6d6c397d40f09c03179c7cb2e 215 Pfam PF01694 Rhomboid family 56 195 8.0E-26 T 13-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 RAM_06865 967d27a6d6c397d40f09c03179c7cb2e 215 Gene3D G3DSA:1.20.1540.10 11 202 8.7E-22 T 13-10-2018 IPR035952 Rhomboid-like superfamily RAM_05755 d172aff9eab37cfa2046652c5de9d24f 1057 Gene3D G3DSA:1.10.10.160 123 229 5.1E-40 T 13-10-2018 IPR013986 DExx box DNA helicase domain superfamily RAM_05755 d172aff9eab37cfa2046652c5de9d24f 1057 Pfam PF13361 UvrD-like helicase C-terminal domain 567 700 3.5E-13 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 RAM_05755 d172aff9eab37cfa2046652c5de9d24f 1057 Pfam PF00580 UvrD/REP helicase N-terminal domain 21 308 6.6E-33 T 13-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 RAM_05755 d172aff9eab37cfa2046652c5de9d24f 1057 Gene3D G3DSA:3.40.50.300 18 306 5.1E-40 T 13-10-2018 RAM_05755 d172aff9eab37cfa2046652c5de9d24f 1057 Gene3D G3DSA:3.40.50.300 350 711 7.3E-35 T 13-10-2018 RAM_05755 d172aff9eab37cfa2046652c5de9d24f 1057 Gene3D G3DSA:1.10.486.10 425 609 7.3E-35 T 13-10-2018 RAM_05755 d172aff9eab37cfa2046652c5de9d24f 1057 SUPERFAMILY SSF52540 12 717 3.96E-84 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_05755 d172aff9eab37cfa2046652c5de9d24f 1057 Pfam PF12705 PD-(D/E)XK nuclease superfamily 801 1046 7.5E-40 T 13-10-2018 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type RAM_24580 6fe26e42c815eae7a75f8f07b664c156 1342 Pfam PF00092 von Willebrand factor type A domain 503 660 2.1E-8 T 13-10-2018 IPR002035 von Willebrand factor, type A RAM_24580 6fe26e42c815eae7a75f8f07b664c156 1342 SMART SM00327 501 698 3.9E-7 T 13-10-2018 IPR002035 von Willebrand factor, type A RAM_24580 6fe26e42c815eae7a75f8f07b664c156 1342 Pfam PF07676 WD40-like Beta Propeller Repeat 382 411 0.038 T 13-10-2018 IPR011659 WD40-like Beta Propeller RAM_24580 6fe26e42c815eae7a75f8f07b664c156 1342 Pfam PF07676 WD40-like Beta Propeller Repeat 245 275 9.9E-5 T 13-10-2018 IPR011659 WD40-like Beta Propeller RAM_24580 6fe26e42c815eae7a75f8f07b664c156 1342 Pfam PF07676 WD40-like Beta Propeller Repeat 113 147 4.3E-6 T 13-10-2018 IPR011659 WD40-like Beta Propeller RAM_24580 6fe26e42c815eae7a75f8f07b664c156 1342 Pfam PF07676 WD40-like Beta Propeller Repeat 155 191 9.6E-11 T 13-10-2018 IPR011659 WD40-like Beta Propeller RAM_24580 6fe26e42c815eae7a75f8f07b664c156 1342 Pfam PF07676 WD40-like Beta Propeller Repeat 331 356 1.7E-4 T 13-10-2018 IPR011659 WD40-like Beta Propeller RAM_24580 6fe26e42c815eae7a75f8f07b664c156 1342 Gene3D G3DSA:2.120.10.30 850 996 3.2E-16 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RAM_24580 6fe26e42c815eae7a75f8f07b664c156 1342 Gene3D G3DSA:2.120.10.30 74 217 1.1E-33 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RAM_24580 6fe26e42c815eae7a75f8f07b664c156 1342 SUPERFAMILY SSF82171 905 989 1.69E-10 T 13-10-2018 RAM_24580 6fe26e42c815eae7a75f8f07b664c156 1342 Gene3D G3DSA:2.120.10.30 218 361 8.7E-18 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RAM_24580 6fe26e42c815eae7a75f8f07b664c156 1342 Gene3D G3DSA:2.120.10.30 383 485 5.4E-8 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RAM_24580 6fe26e42c815eae7a75f8f07b664c156 1342 SUPERFAMILY SSF82171 101 459 2.98E-42 T 13-10-2018 RAM_24580 6fe26e42c815eae7a75f8f07b664c156 1342 Gene3D G3DSA:3.40.50.410 500 702 4.1E-15 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RAM_24580 6fe26e42c815eae7a75f8f07b664c156 1342 SUPERFAMILY SSF53300 503 662 1.63E-19 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RAM_15120 d75b1783b5cdaa8f0f836d40e46f40ee 403 Pfam PF09298 Fumarylacetoacetase N-terminal 18 110 6.4E-18 T 13-10-2018 IPR015377 Fumarylacetoacetase, N-terminal GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|Reactome: R-HSA-71182 RAM_15120 d75b1783b5cdaa8f0f836d40e46f40ee 403 TIGRFAM TIGR01266 fum_ac_acetase: fumarylacetoacetase 5 402 1.8E-135 T 13-10-2018 IPR005959 Fumarylacetoacetase GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|Reactome: R-HSA-71182 RAM_15120 d75b1783b5cdaa8f0f836d40e46f40ee 403 SUPERFAMILY SSF63433 4 110 1.03E-25 T 13-10-2018 IPR036462 Fumarylacetoacetase, N-terminal domain superfamily GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|Reactome: R-HSA-71182 RAM_15120 d75b1783b5cdaa8f0f836d40e46f40ee 403 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 117 401 2.9E-56 T 13-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 RAM_15120 d75b1783b5cdaa8f0f836d40e46f40ee 403 SUPERFAMILY SSF56529 113 402 3.14E-94 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 RAM_15120 d75b1783b5cdaa8f0f836d40e46f40ee 403 Gene3D G3DSA:3.90.850.10 109 403 8.3E-109 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 RAM_15120 d75b1783b5cdaa8f0f836d40e46f40ee 403 Gene3D G3DSA:2.30.30.230 1 107 1.7E-21 T 13-10-2018 IPR036462 Fumarylacetoacetase, N-terminal domain superfamily GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|Reactome: R-HSA-71182 RAM_20305 131fb9d1fb72c08102fad21d66ab9f62 193 SUPERFAMILY SSF46689 12 94 5.49E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_20305 131fb9d1fb72c08102fad21d66ab9f62 193 Gene3D G3DSA:1.10.357.10 6 193 2.0E-43 T 13-10-2018 RAM_20305 131fb9d1fb72c08102fad21d66ab9f62 193 SUPERFAMILY SSF48498 90 192 7.42E-10 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_20305 131fb9d1fb72c08102fad21d66ab9f62 193 Pfam PF00440 Bacterial regulatory proteins, tetR family 25 69 1.4E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_20305 131fb9d1fb72c08102fad21d66ab9f62 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 44 67 3.9E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_20305 131fb9d1fb72c08102fad21d66ab9f62 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 24 37 3.9E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_40860 0b4354f67e7f6c50f07c04b75bc77d60 636 SUPERFAMILY SSF53474 341 620 7.37E-57 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_40860 0b4354f67e7f6c50f07c04b75bc77d60 636 Gene3D G3DSA:3.40.50.2000 1 140 5.4E-5 T 13-10-2018 RAM_40860 0b4354f67e7f6c50f07c04b75bc77d60 636 SUPERFAMILY SSF53756 9 330 6.67E-48 T 13-10-2018 RAM_40860 0b4354f67e7f6c50f07c04b75bc77d60 636 Gene3D G3DSA:3.40.50.2000 141 314 1.0E-32 T 13-10-2018 RAM_40860 0b4354f67e7f6c50f07c04b75bc77d60 636 Pfam PF00534 Glycosyl transferases group 1 149 306 4.6E-20 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 RAM_40860 0b4354f67e7f6c50f07c04b75bc77d60 636 Gene3D G3DSA:3.40.50.1820 342 623 4.0E-65 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_40860 0b4354f67e7f6c50f07c04b75bc77d60 636 Pfam PF00561 alpha/beta hydrolase fold 365 605 1.1E-18 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_40860 0b4354f67e7f6c50f07c04b75bc77d60 636 PRINTS PR00111 Alpha/beta hydrolase fold signature 439 452 2.3E-6 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_40860 0b4354f67e7f6c50f07c04b75bc77d60 636 PRINTS PR00111 Alpha/beta hydrolase fold signature 568 582 2.3E-6 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_40860 0b4354f67e7f6c50f07c04b75bc77d60 636 PRINTS PR00111 Alpha/beta hydrolase fold signature 453 466 2.3E-6 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_41885 bed11007c3fa0c8f38d4f76e633da623 935 SUPERFAMILY SSF48452 535 646 6.51E-12 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_41885 bed11007c3fa0c8f38d4f76e633da623 935 Pfam PF13191 AAA ATPase domain 11 169 1.4E-23 T 13-10-2018 RAM_41885 bed11007c3fa0c8f38d4f76e633da623 935 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 874 888 1.9E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_41885 bed11007c3fa0c8f38d4f76e633da623 935 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 904 916 1.9E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_41885 bed11007c3fa0c8f38d4f76e633da623 935 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 888 904 1.9E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_41885 bed11007c3fa0c8f38d4f76e633da623 935 SUPERFAMILY SSF46894 865 931 5.1E-18 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_41885 bed11007c3fa0c8f38d4f76e633da623 935 Gene3D G3DSA:1.10.10.10 852 931 3.7E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_41885 bed11007c3fa0c8f38d4f76e633da623 935 Gene3D G3DSA:1.25.40.10 397 650 7.6E-19 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_41885 bed11007c3fa0c8f38d4f76e633da623 935 Gene3D G3DSA:1.25.40.10 651 847 2.9E-8 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_41885 bed11007c3fa0c8f38d4f76e633da623 935 ProSitePatterns PS00622 LuxR-type HTH domain signature. 888 915 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_41885 bed11007c3fa0c8f38d4f76e633da623 935 SMART SM00421 871 928 3.6E-23 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_41885 bed11007c3fa0c8f38d4f76e633da623 935 SMART SM00382 32 193 1.8E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_41885 bed11007c3fa0c8f38d4f76e633da623 935 SUPERFAMILY SSF48452 410 569 8.42E-9 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_41885 bed11007c3fa0c8f38d4f76e633da623 935 Pfam PF00196 Bacterial regulatory proteins, luxR family 872 927 1.7E-16 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_41885 bed11007c3fa0c8f38d4f76e633da623 935 SUPERFAMILY SSF52540 9 248 3.07E-13 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_20035 d14e6ee3038e04cda36394308dfd3228 891 Pfam PF00041 Fibronectin type III domain 654 729 9.0E-9 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 RAM_20035 d14e6ee3038e04cda36394308dfd3228 891 SMART SM00060 652 725 6.2E-12 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 RAM_20035 d14e6ee3038e04cda36394308dfd3228 891 SMART SM01067 499 577 3.8E-10 T 13-10-2018 IPR001956 Carbohydrate-binding module 3 GO:0005975|GO:0030248 RAM_20035 d14e6ee3038e04cda36394308dfd3228 891 SMART SM01067 748 830 2.9E-22 T 13-10-2018 IPR001956 Carbohydrate-binding module 3 GO:0005975|GO:0030248 RAM_20035 d14e6ee3038e04cda36394308dfd3228 891 ProSitePatterns PS00698 Glycosyl hydrolases family 9 active sites signature 2. 449 467 - T 13-10-2018 IPR033126 Glycosyl hydrolases family 9, Asp/Glu active sites KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 RAM_20035 d14e6ee3038e04cda36394308dfd3228 891 SUPERFAMILY SSF49384 506 642 1.05E-24 T 13-10-2018 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily GO:0030246 RAM_20035 d14e6ee3038e04cda36394308dfd3228 891 Pfam PF00759 Glycosyl hydrolase family 9 39 473 2.6E-137 T 13-10-2018 IPR001701 Glycoside hydrolase family 9 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 RAM_20035 d14e6ee3038e04cda36394308dfd3228 891 SUPERFAMILY SSF49265 648 736 2.98E-16 T 13-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 RAM_20035 d14e6ee3038e04cda36394308dfd3228 891 Gene3D G3DSA:1.50.10.10 35 490 1.7E-195 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 RAM_20035 d14e6ee3038e04cda36394308dfd3228 891 Gene3D G3DSA:2.60.40.710 744 891 7.9E-46 T 13-10-2018 IPR036966 Carbohydrate-binding module 3 superfamily GO:0005975|GO:0030248 RAM_20035 d14e6ee3038e04cda36394308dfd3228 891 SUPERFAMILY SSF48208 35 489 3.74E-157 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_20035 d14e6ee3038e04cda36394308dfd3228 891 Gene3D G3DSA:2.60.40.710 494 640 1.7E-35 T 13-10-2018 IPR036966 Carbohydrate-binding module 3 superfamily GO:0005975|GO:0030248 RAM_20035 d14e6ee3038e04cda36394308dfd3228 891 Pfam PF00942 Cellulose binding domain 754 829 1.3E-19 T 13-10-2018 IPR001956 Carbohydrate-binding module 3 GO:0005975|GO:0030248 RAM_20035 d14e6ee3038e04cda36394308dfd3228 891 Pfam PF00942 Cellulose binding domain 506 576 2.3E-11 T 13-10-2018 IPR001956 Carbohydrate-binding module 3 GO:0005975|GO:0030248 RAM_20035 d14e6ee3038e04cda36394308dfd3228 891 Gene3D G3DSA:2.60.40.10 650 736 3.2E-24 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_20035 d14e6ee3038e04cda36394308dfd3228 891 SUPERFAMILY SSF49384 751 891 4.13E-38 T 13-10-2018 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily GO:0030246 RAM_16690 ff054dfe82db802e3ffd3ed03a202ba0 178 SUPERFAMILY SSF48317 23 172 3.92E-28 T 13-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily RAM_16690 ff054dfe82db802e3ffd3ed03a202ba0 178 SMART SM00014 57 167 4.4E-14 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RAM_16690 ff054dfe82db802e3ffd3ed03a202ba0 178 Pfam PF01569 PAP2 superfamily 63 168 1.9E-17 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RAM_16690 ff054dfe82db802e3ffd3ed03a202ba0 178 Gene3D G3DSA:1.20.144.10 85 176 5.3E-16 T 13-10-2018 RAM_11435 806c34c0902451887c97405fe2b682a2 422 Pfam PF17189 Glycosyl hydrolase family 30 beta sandwich domain 332 419 1.7E-6 T 13-10-2018 IPR033452 Glycosyl hydrolase family 30, beta sandwich domain Reactome: R-HSA-1660662|Reactome: R-HSA-390471 RAM_11435 806c34c0902451887c97405fe2b682a2 422 Gene3D G3DSA:3.20.20.80 55 331 6.2E-150 T 13-10-2018 RAM_11435 806c34c0902451887c97405fe2b682a2 422 SUPERFAMILY SSF51445 56 331 6.53E-48 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_11435 806c34c0902451887c97405fe2b682a2 422 Gene3D G3DSA:2.60.40.1180 45 420 6.2E-150 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta RAM_11435 806c34c0902451887c97405fe2b682a2 422 SUPERFAMILY SSF51011 327 421 1.23E-17 T 13-10-2018 RAM_00410 8311ba9d92013501d90a80e17f2ea057 316 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 10 125 2.4E-39 T 13-10-2018 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 RAM_00410 8311ba9d92013501d90a80e17f2ea057 316 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 10 316 3.0E-93 T 13-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 RAM_00410 8311ba9d92013501d90a80e17f2ea057 316 SMART SM01400 9 125 9.8E-61 T 13-10-2018 RAM_00410 8311ba9d92013501d90a80e17f2ea057 316 SUPERFAMILY SSF53271 74 309 3.81E-43 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like RAM_00410 8311ba9d92013501d90a80e17f2ea057 316 Pfam PF14572 Phosphoribosyl synthetase-associated domain 209 316 4.6E-18 T 13-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 RAM_00410 8311ba9d92013501d90a80e17f2ea057 316 Gene3D G3DSA:3.40.50.2020 152 293 3.8E-98 T 13-10-2018 RAM_00410 8311ba9d92013501d90a80e17f2ea057 316 Gene3D G3DSA:3.40.50.2020 12 305 3.8E-98 T 13-10-2018 RAM_43925 6c0f0f23d8abb7bedc911f856ca9356a 225 SUPERFAMILY SSF51219 1 224 6.28E-59 T 13-10-2018 IPR016031 Tryptophan RNA-binding attenuator protein-like domain superfamily RAM_43925 6c0f0f23d8abb7bedc911f856ca9356a 225 TIGRFAM TIGR00266 TIGR00266: TIGR00266 family protein 1 224 5.4E-51 T 13-10-2018 IPR002838 Mitochondrial biogenesis protein AIM24 RAM_43925 6c0f0f23d8abb7bedc911f856ca9356a 225 Gene3D G3DSA:3.60.160.10 1 225 1.0E-66 T 13-10-2018 IPR036983 Mitochondrial biogenesis AIM24 superfamily RAM_43925 6c0f0f23d8abb7bedc911f856ca9356a 225 Pfam PF01987 Mitochondrial biogenesis AIM24 10 209 1.7E-50 T 13-10-2018 IPR002838 Mitochondrial biogenesis protein AIM24 RAM_20720 b7244823db2fe06726d6cc70039148e6 1798 SUPERFAMILY SSF52777 1563 1788 9.12E-11 T 13-10-2018 RAM_20720 b7244823db2fe06726d6cc70039148e6 1798 Gene3D G3DSA:1.10.1200.10 1278 1351 1.2E-15 T 13-10-2018 IPR036736 ACP-like superfamily RAM_20720 b7244823db2fe06726d6cc70039148e6 1798 SUPERFAMILY SSF52777 816 992 2.52E-51 T 13-10-2018 RAM_20720 b7244823db2fe06726d6cc70039148e6 1798 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 371 479 1.3E-12 T 13-10-2018 IPR032821 Ketoacyl-synthetase, C-terminal extension Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_20720 b7244823db2fe06726d6cc70039148e6 1798 Gene3D G3DSA:3.30.559.10 1371 1544 4.4E-22 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_20720 b7244823db2fe06726d6cc70039148e6 1798 SUPERFAMILY SSF52777 999 1247 1.89E-51 T 13-10-2018 RAM_20720 b7244823db2fe06726d6cc70039148e6 1798 Gene3D G3DSA:3.30.559.30 996 1248 7.5E-134 T 13-10-2018 RAM_20720 b7244823db2fe06726d6cc70039148e6 1798 SUPERFAMILY SSF53901 2 358 1.74E-70 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_20720 b7244823db2fe06726d6cc70039148e6 1798 Gene3D G3DSA:3.30.559.30 1548 1798 1.9E-22 T 13-10-2018 RAM_20720 b7244823db2fe06726d6cc70039148e6 1798 Gene3D G3DSA:1.10.1200.10 707 796 2.5E-16 T 13-10-2018 IPR036736 ACP-like superfamily RAM_20720 b7244823db2fe06726d6cc70039148e6 1798 SMART SM00825 Beta-ketoacyl synthase 6 419 8.1E-125 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RAM_20720 b7244823db2fe06726d6cc70039148e6 1798 Gene3D G3DSA:3.40.47.10 6 462 7.5E-158 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_20720 b7244823db2fe06726d6cc70039148e6 1798 Gene3D G3DSA:3.30.559.10 815 1192 7.5E-134 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_20720 b7244823db2fe06726d6cc70039148e6 1798 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1309 1324 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_20720 b7244823db2fe06726d6cc70039148e6 1798 SUPERFAMILY SSF47336 1280 1347 7.72E-12 T 13-10-2018 IPR036736 ACP-like superfamily RAM_20720 b7244823db2fe06726d6cc70039148e6 1798 Pfam PF00550 Phosphopantetheine attachment site 1288 1348 5.2E-9 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_20720 b7244823db2fe06726d6cc70039148e6 1798 Pfam PF00550 Phosphopantetheine attachment site 726 789 7.6E-12 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_20720 b7244823db2fe06726d6cc70039148e6 1798 SMART SM00823 Phosphopantetheine attachment site 724 793 0.0074 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_20720 b7244823db2fe06726d6cc70039148e6 1798 SMART SM00823 Phosphopantetheine attachment site 1284 1353 0.063 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_20720 b7244823db2fe06726d6cc70039148e6 1798 Gene3D G3DSA:3.30.70.3050 463 505 7.5E-158 T 13-10-2018 RAM_20720 b7244823db2fe06726d6cc70039148e6 1798 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 250 369 4.4E-35 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal RAM_20720 b7244823db2fe06726d6cc70039148e6 1798 Pfam PF00668 Condensation domain 814 1250 1.6E-87 T 13-10-2018 IPR001242 Condensation domain RAM_20720 b7244823db2fe06726d6cc70039148e6 1798 Pfam PF00668 Condensation domain 1402 1704 1.1E-16 T 13-10-2018 IPR001242 Condensation domain RAM_20720 b7244823db2fe06726d6cc70039148e6 1798 SUPERFAMILY SSF47336 722 826 5.23E-14 T 13-10-2018 IPR036736 ACP-like superfamily RAM_20720 b7244823db2fe06726d6cc70039148e6 1798 SUPERFAMILY SSF52777 1387 1557 1.11E-18 T 13-10-2018 RAM_20720 b7244823db2fe06726d6cc70039148e6 1798 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 4 240 3.5E-59 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal RAM_20720 b7244823db2fe06726d6cc70039148e6 1798 Gene3D G3DSA:3.40.366.20 541 691 4.4E-6 T 13-10-2018 RAM_16065 6187b90097058b12382b812121f2ca2e 230 Gene3D G3DSA:1.10.10.10 129 229 4.9E-33 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_16065 6187b90097058b12382b812121f2ca2e 230 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 225 2.6E-26 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_16065 6187b90097058b12382b812121f2ca2e 230 Gene3D G3DSA:3.40.50.2300 2 128 1.2E-40 T 13-10-2018 RAM_16065 6187b90097058b12382b812121f2ca2e 230 SMART SM00862 151 225 9.4E-29 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_16065 6187b90097058b12382b812121f2ca2e 230 SUPERFAMILY SSF52172 4 180 3.84E-44 T 13-10-2018 IPR011006 CheY-like superfamily RAM_16065 6187b90097058b12382b812121f2ca2e 230 Pfam PF00072 Response regulator receiver domain 6 119 3.2E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_16065 6187b90097058b12382b812121f2ca2e 230 SMART SM00448 3 118 6.2E-46 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_39680 8f427f52039d863b45ca33fec2c62c7b 651 Pfam PF13307 Helicase C-terminal domain 469 628 3.3E-27 T 13-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 RAM_39680 8f427f52039d863b45ca33fec2c62c7b 651 SMART SM00491 486 615 1.9E-42 T 13-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 RAM_39680 8f427f52039d863b45ca33fec2c62c7b 651 Gene3D G3DSA:3.40.50.300 457 642 8.8E-29 T 13-10-2018 RAM_39680 8f427f52039d863b45ca33fec2c62c7b 651 Pfam PF00270 DEAD/DEAH box helicase 8 60 9.8E-6 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RAM_39680 8f427f52039d863b45ca33fec2c62c7b 651 SUPERFAMILY SSF52540 8 609 8.74E-21 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_39680 8f427f52039d863b45ca33fec2c62c7b 651 Gene3D G3DSA:3.40.50.300 1 246 6.5E-42 T 13-10-2018 RAM_32010 b7ffd9132811a9428d627a72e36a4e3d 376 Gene3D G3DSA:3.75.10.10 7 372 1.3E-108 T 13-10-2018 RAM_32010 b7ffd9132811a9428d627a72e36a4e3d 376 SUPERFAMILY SSF55909 6 372 7.69E-89 T 13-10-2018 RAM_39740 4092b3aaac631b356891ed9c34c293b2 293 SUPERFAMILY SSF53098 124 283 2.12E-36 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily RAM_39740 4092b3aaac631b356891ed9c34c293b2 293 Pfam PF13276 HTH-like domain 47 104 4.5E-23 T 13-10-2018 IPR025948 HTH-like domain RAM_39740 4092b3aaac631b356891ed9c34c293b2 293 Pfam PF00665 Integrase core domain 129 243 3.9E-26 T 13-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RAM_39740 4092b3aaac631b356891ed9c34c293b2 293 Gene3D G3DSA:3.30.420.10 125 287 7.0E-12 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RAM_45740 4092b3aaac631b356891ed9c34c293b2 293 SUPERFAMILY SSF53098 124 283 2.12E-36 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily RAM_45740 4092b3aaac631b356891ed9c34c293b2 293 Pfam PF13276 HTH-like domain 47 104 4.5E-23 T 13-10-2018 IPR025948 HTH-like domain RAM_45740 4092b3aaac631b356891ed9c34c293b2 293 Pfam PF00665 Integrase core domain 129 243 3.9E-26 T 13-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RAM_45740 4092b3aaac631b356891ed9c34c293b2 293 Gene3D G3DSA:3.30.420.10 125 287 7.0E-12 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RAM_44020 b411412851bccd7fde53b725f2539a86 252 Pfam PF05690 Thiazole biosynthesis protein ThiG 8 250 1.3E-102 T 13-10-2018 IPR033983 Thiazole synthase ThiG KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 RAM_44020 b411412851bccd7fde53b725f2539a86 252 Gene3D G3DSA:3.20.20.70 1 252 1.6E-107 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_44020 b411412851bccd7fde53b725f2539a86 252 Hamap MF_00443 Thiazole synthase [thiG]. 5 252 40.145 T 13-10-2018 IPR008867 Thiazole synthase GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 RAM_44020 b411412851bccd7fde53b725f2539a86 252 SUPERFAMILY SSF110399 5 242 3.27E-80 T 13-10-2018 RAM_46425 d03e1e736cda604f57995dfcc6e4977a 524 Gene3D G3DSA:1.10.1220.110 97 151 1.1E-188 T 13-10-2018 RAM_46425 d03e1e736cda604f57995dfcc6e4977a 524 Gene3D G3DSA:3.30.410.40 152 466 1.1E-188 T 13-10-2018 RAM_46425 d03e1e736cda604f57995dfcc6e4977a 524 Gene3D G3DSA:4.10.450.10 40 197 1.1E-188 T 13-10-2018 IPR027424 Glucose Oxidase, domain 2 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|Reactome: R-HSA-6798163 RAM_46425 d03e1e736cda604f57995dfcc6e4977a 524 PIRSF PIRSF000137 1 524 6.6E-153 T 13-10-2018 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 RAM_46425 d03e1e736cda604f57995dfcc6e4977a 524 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 255 269 - T 13-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 RAM_46425 d03e1e736cda604f57995dfcc6e4977a 524 SUPERFAMILY SSF54373 291 469 1.77E-42 T 13-10-2018 RAM_46425 d03e1e736cda604f57995dfcc6e4977a 524 SUPERFAMILY SSF51905 5 522 9.5E-90 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_46425 d03e1e736cda604f57995dfcc6e4977a 524 Pfam PF05199 GMC oxidoreductase 385 515 5.4E-36 T 13-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 RAM_46425 d03e1e736cda604f57995dfcc6e4977a 524 Gene3D G3DSA:3.50.50.60 7 519 1.1E-188 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_46425 d03e1e736cda604f57995dfcc6e4977a 524 Pfam PF00732 GMC oxidoreductase 7 297 6.0E-94 T 13-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 RAM_42910 70edd5cebd79ab3450a57e86c32f2100 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 2.4E-24 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_42910 70edd5cebd79ab3450a57e86c32f2100 294 SUPERFAMILY SSF53850 89 293 3.95E-47 T 13-10-2018 RAM_42910 70edd5cebd79ab3450a57e86c32f2100 294 Gene3D G3DSA:3.40.190.290 90 293 9.0E-52 T 13-10-2018 RAM_42910 70edd5cebd79ab3450a57e86c32f2100 294 SUPERFAMILY SSF46785 1 85 9.37E-25 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_42910 70edd5cebd79ab3450a57e86c32f2100 294 Gene3D G3DSA:1.10.10.10 1 84 2.9E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_42910 70edd5cebd79ab3450a57e86c32f2100 294 Pfam PF03466 LysR substrate binding domain 88 291 1.3E-48 T 13-10-2018 IPR005119 LysR, substrate-binding RAM_42910 70edd5cebd79ab3450a57e86c32f2100 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 8.7E-11 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_42910 70edd5cebd79ab3450a57e86c32f2100 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 8.7E-11 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_42910 70edd5cebd79ab3450a57e86c32f2100 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 8.7E-11 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_23005 7b1e9d0fc146d6f3c9c7ed944478f513 431 SMART SM00828 Methyltransferase in polyketide synthase (PKS) enzymes. 159 420 0.0064 T 13-10-2018 IPR020803 Polyketide synthase, methyltransferase domain RAM_23005 7b1e9d0fc146d6f3c9c7ed944478f513 431 Gene3D G3DSA:3.40.50.150 149 418 1.4E-92 T 13-10-2018 RAM_23005 7b1e9d0fc146d6f3c9c7ed944478f513 431 SUPERFAMILY SSF53335 151 414 9.38E-72 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_23005 7b1e9d0fc146d6f3c9c7ed944478f513 431 Pfam PF02353 Mycolic acid cyclopropane synthetase 140 410 1.2E-96 T 13-10-2018 RAM_23005 7b1e9d0fc146d6f3c9c7ed944478f513 431 PIRSF PIRSF003085 14 429 5.3E-127 T 13-10-2018 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 RAM_33105 5e63eea263a58476a5482f8afd1b597c 928 Gene3D G3DSA:1.25.40.10 666 920 9.3E-28 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_33105 5e63eea263a58476a5482f8afd1b597c 928 PRINTS PR00364 Disease resistance protein signature 455 469 2.6E-9 T 13-10-2018 RAM_33105 5e63eea263a58476a5482f8afd1b597c 928 PRINTS PR00364 Disease resistance protein signature 367 381 2.6E-9 T 13-10-2018 RAM_33105 5e63eea263a58476a5482f8afd1b597c 928 PRINTS PR00364 Disease resistance protein signature 289 304 2.6E-9 T 13-10-2018 RAM_33105 5e63eea263a58476a5482f8afd1b597c 928 Gene3D G3DSA:3.40.50.300 254 408 3.1E-26 T 13-10-2018 RAM_33105 5e63eea263a58476a5482f8afd1b597c 928 SUPERFAMILY SSF48452 685 895 3.41E-21 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_33105 5e63eea263a58476a5482f8afd1b597c 928 SMART SM01043 93 235 1.6E-44 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_33105 5e63eea263a58476a5482f8afd1b597c 928 SUPERFAMILY SSF46894 12 70 6.52E-9 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_33105 5e63eea263a58476a5482f8afd1b597c 928 Pfam PF00486 Transcriptional regulatory protein, C terminal 16 70 3.5E-5 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_33105 5e63eea263a58476a5482f8afd1b597c 928 SMART SM00028 745 778 5.5 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_33105 5e63eea263a58476a5482f8afd1b597c 928 SMART SM00028 705 738 6.6 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_33105 5e63eea263a58476a5482f8afd1b597c 928 SMART SM00028 866 899 190.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_33105 5e63eea263a58476a5482f8afd1b597c 928 SMART SM00028 786 819 0.0015 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_33105 5e63eea263a58476a5482f8afd1b597c 928 SUPERFAMILY SSF52540 258 521 2.72E-24 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_33105 5e63eea263a58476a5482f8afd1b597c 928 SUPERFAMILY SSF48452 89 255 2.69E-31 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_33105 5e63eea263a58476a5482f8afd1b597c 928 Pfam PF03704 Bacterial transcriptional activator domain 93 235 2.3E-38 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_33105 5e63eea263a58476a5482f8afd1b597c 928 Pfam PF13424 Tetratricopeptide repeat 744 816 1.1E-12 T 13-10-2018 RAM_33105 5e63eea263a58476a5482f8afd1b597c 928 Pfam PF00931 NB-ARC domain 287 474 2.0E-8 T 13-10-2018 IPR002182 NB-ARC GO:0043531 Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-6798695|Reactome: R-HSA-6803207|Reactome: R-HSA-8953750 RAM_33105 5e63eea263a58476a5482f8afd1b597c 928 Gene3D G3DSA:1.10.10.10 1 88 1.3E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_33105 5e63eea263a58476a5482f8afd1b597c 928 Gene3D G3DSA:1.25.40.10 90 253 1.4E-43 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_33105 5e63eea263a58476a5482f8afd1b597c 928 SMART SM00862 7 86 1.3E-5 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_26445 84b5148a1b6225270be8bc1eee853f3a 591 SMART SM00637 28 126 8.6E-41 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_26445 84b5148a1b6225270be8bc1eee853f3a 591 PRINTS PR00733 Glycosyl hydrolase family 6 signature 348 361 2.1E-35 T 13-10-2018 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 RAM_26445 84b5148a1b6225270be8bc1eee853f3a 591 PRINTS PR00733 Glycosyl hydrolase family 6 signature 247 260 2.1E-35 T 13-10-2018 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 RAM_26445 84b5148a1b6225270be8bc1eee853f3a 591 PRINTS PR00733 Glycosyl hydrolase family 6 signature 452 465 2.1E-35 T 13-10-2018 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 RAM_26445 84b5148a1b6225270be8bc1eee853f3a 591 PRINTS PR00733 Glycosyl hydrolase family 6 signature 196 215 2.1E-35 T 13-10-2018 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 RAM_26445 84b5148a1b6225270be8bc1eee853f3a 591 PRINTS PR00733 Glycosyl hydrolase family 6 signature 388 398 2.1E-35 T 13-10-2018 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 RAM_26445 84b5148a1b6225270be8bc1eee853f3a 591 PRINTS PR00733 Glycosyl hydrolase family 6 signature 492 512 2.1E-35 T 13-10-2018 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 RAM_26445 84b5148a1b6225270be8bc1eee853f3a 591 PRINTS PR00733 Glycosyl hydrolase family 6 signature 515 529 2.1E-35 T 13-10-2018 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 RAM_26445 84b5148a1b6225270be8bc1eee853f3a 591 PRINTS PR00733 Glycosyl hydrolase family 6 signature 281 296 2.1E-35 T 13-10-2018 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 RAM_26445 84b5148a1b6225270be8bc1eee853f3a 591 Gene3D G3DSA:2.60.40.290 22 128 1.2E-32 T 13-10-2018 IPR012291 CBM2, carbohydrate-binding domain superfamily GO:0004553|GO:0030247 RAM_26445 84b5148a1b6225270be8bc1eee853f3a 591 Pfam PF00553 Cellulose binding domain 28 126 1.9E-27 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_26445 84b5148a1b6225270be8bc1eee853f3a 591 Pfam PF01341 Glycosyl hydrolases family 6 193 538 2.8E-100 T 13-10-2018 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 RAM_26445 84b5148a1b6225270be8bc1eee853f3a 591 Gene3D G3DSA:3.20.20.40 167 590 4.1E-166 T 13-10-2018 IPR036434 1, 4-beta cellobiohydrolase superfamily GO:0004553|GO:0030245 RAM_26445 84b5148a1b6225270be8bc1eee853f3a 591 SUPERFAMILY SSF49384 25 127 2.79E-29 T 13-10-2018 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily GO:0030246 RAM_26445 84b5148a1b6225270be8bc1eee853f3a 591 ProSitePatterns PS00656 Glycosyl hydrolases family 6 signature 2. 303 312 - T 13-10-2018 IPR001524 Glycoside hydrolase, family 6, conserved site GO:0004553|GO:0005975 RAM_26445 84b5148a1b6225270be8bc1eee853f3a 591 SUPERFAMILY SSF51989 167 590 1.57E-112 T 13-10-2018 IPR036434 1, 4-beta cellobiohydrolase superfamily GO:0004553|GO:0030245 RAM_26445 84b5148a1b6225270be8bc1eee853f3a 591 ProSitePatterns PS00655 Glycosyl hydrolases family 6 signature 1. 252 268 - T 13-10-2018 IPR001524 Glycoside hydrolase, family 6, conserved site GO:0004553|GO:0005975 RAM_26445 84b5148a1b6225270be8bc1eee853f3a 591 PIRSF PIRSF001100 2 590 7.8E-106 T 13-10-2018 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 RAM_23715 8e9e24ac7d0155696a5f4999cc52811f 581 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_23715 8e9e24ac7d0155696a5f4999cc52811f 581 SMART SM00382 34 241 3.7E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_23715 8e9e24ac7d0155696a5f4999cc52811f 581 SMART SM00382 322 512 1.7E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_23715 8e9e24ac7d0155696a5f4999cc52811f 581 SUPERFAMILY SSF52540 5 256 4.86E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_23715 8e9e24ac7d0155696a5f4999cc52811f 581 Gene3D G3DSA:3.40.50.300 3 290 3.1E-81 T 13-10-2018 RAM_23715 8e9e24ac7d0155696a5f4999cc52811f 581 Gene3D G3DSA:3.40.50.300 291 573 1.6E-75 T 13-10-2018 RAM_23715 8e9e24ac7d0155696a5f4999cc52811f 581 Pfam PF00005 ABC transporter 315 463 1.4E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_23715 8e9e24ac7d0155696a5f4999cc52811f 581 Pfam PF00005 ABC transporter 27 184 1.6E-23 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_23715 8e9e24ac7d0155696a5f4999cc52811f 581 ProSitePatterns PS00211 ABC transporters family signature. 435 449 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_23715 8e9e24ac7d0155696a5f4999cc52811f 581 SUPERFAMILY SSF52540 292 534 5.0E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_23715 8e9e24ac7d0155696a5f4999cc52811f 581 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 514 546 0.0035 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RAM_23715 8e9e24ac7d0155696a5f4999cc52811f 581 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 236 267 0.0031 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RAM_35105 42c3afeac3c67755a78e2503b1db013b 513 Gene3D G3DSA:3.50.50.60 2 510 2.0E-181 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_35105 42c3afeac3c67755a78e2503b1db013b 513 SUPERFAMILY SSF51905 1 511 3.89E-89 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_35105 42c3afeac3c67755a78e2503b1db013b 513 SUPERFAMILY SSF54373 283 460 4.22E-42 T 13-10-2018 RAM_35105 42c3afeac3c67755a78e2503b1db013b 513 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 78 101 - T 13-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 RAM_35105 42c3afeac3c67755a78e2503b1db013b 513 Pfam PF05199 GMC oxidoreductase 375 506 7.8E-36 T 13-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 RAM_35105 42c3afeac3c67755a78e2503b1db013b 513 PIRSF PIRSF000137 1 513 7.6E-147 T 13-10-2018 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 RAM_35105 42c3afeac3c67755a78e2503b1db013b 513 Gene3D G3DSA:1.10.1220.110 93 143 2.0E-181 T 13-10-2018 RAM_35105 42c3afeac3c67755a78e2503b1db013b 513 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 247 261 - T 13-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 RAM_35105 42c3afeac3c67755a78e2503b1db013b 513 Gene3D G3DSA:4.10.450.10 35 189 2.0E-181 T 13-10-2018 IPR027424 Glucose Oxidase, domain 2 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|Reactome: R-HSA-6798163 RAM_35105 42c3afeac3c67755a78e2503b1db013b 513 Gene3D G3DSA:3.30.410.40 144 457 2.0E-181 T 13-10-2018 RAM_35105 42c3afeac3c67755a78e2503b1db013b 513 Pfam PF00732 GMC oxidoreductase 2 288 6.7E-93 T 13-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 RAM_42995 77dff287891db034194cc7c497735a79 355 Gene3D G3DSA:3.40.50.300 20 354 6.9E-88 T 13-10-2018 RAM_42995 77dff287891db034194cc7c497735a79 355 SUPERFAMILY SSF52540 23 275 2.2E-64 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_42995 77dff287891db034194cc7c497735a79 355 SMART SM00382 61 254 2.6E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_42995 77dff287891db034194cc7c497735a79 355 ProSitePatterns PS00211 ABC transporters family signature. 177 191 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_42995 77dff287891db034194cc7c497735a79 355 Pfam PF00005 ABC transporter 53 204 5.1E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_42995 77dff287891db034194cc7c497735a79 355 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 255 349 1.5E-20 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RAM_42995 77dff287891db034194cc7c497735a79 355 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 256 327 9.8E-17 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RAM_06035 3b957781d88bbad2b03c73059ef1e0a3 333 SUPERFAMILY SSF54001 204 318 4.58E-34 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily RAM_06035 3b957781d88bbad2b03c73059ef1e0a3 333 Gene3D G3DSA:3.90.1720.10 190 330 1.7E-38 T 13-10-2018 RAM_06035 3b957781d88bbad2b03c73059ef1e0a3 333 Pfam PF00877 NlpC/P60 family 223 312 3.0E-23 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain RAM_29440 bf89e7ef6237651d9440b3453bb298da 89 Gene3D G3DSA:3.30.365.10 1 89 1.7E-32 T 13-10-2018 RAM_29440 bf89e7ef6237651d9440b3453bb298da 89 SUPERFAMILY SSF47741 21 87 3.93E-30 T 13-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily RAM_29440 bf89e7ef6237651d9440b3453bb298da 89 Pfam PF01799 [2Fe-2S] binding domain 10 82 6.9E-31 T 13-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RAM_40585 d01d61f3dbddf63493975cbbcc26d058 1226 SUPERFAMILY SSF48452 992 1112 6.45E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_40585 d01d61f3dbddf63493975cbbcc26d058 1226 Gene3D G3DSA:3.40.50.300 401 558 1.2E-26 T 13-10-2018 RAM_40585 d01d61f3dbddf63493975cbbcc26d058 1226 Pfam PF13424 Tetratricopeptide repeat 1085 1156 2.6E-10 T 13-10-2018 RAM_40585 d01d61f3dbddf63493975cbbcc26d058 1226 SUPERFAMILY SSF48452 792 888 2.28E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_40585 d01d61f3dbddf63493975cbbcc26d058 1226 Pfam PF13374 Tetratricopeptide repeat 1166 1206 0.0018 T 13-10-2018 RAM_40585 d01d61f3dbddf63493975cbbcc26d058 1226 Pfam PF13374 Tetratricopeptide repeat 832 869 0.01 T 13-10-2018 RAM_40585 d01d61f3dbddf63493975cbbcc26d058 1226 SUPERFAMILY SSF48452 1076 1196 2.13E-11 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_40585 d01d61f3dbddf63493975cbbcc26d058 1226 Gene3D G3DSA:1.25.40.10 790 919 1.3E-14 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_40585 d01d61f3dbddf63493975cbbcc26d058 1226 Gene3D G3DSA:1.25.40.10 1047 1218 9.1E-34 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_40585 d01d61f3dbddf63493975cbbcc26d058 1226 SUPERFAMILY SSF52540 404 650 8.86E-28 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_40585 d01d61f3dbddf63493975cbbcc26d058 1226 Pfam PF00931 NB-ARC domain 421 589 1.1E-9 T 13-10-2018 IPR002182 NB-ARC GO:0043531 Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-6798695|Reactome: R-HSA-6803207|Reactome: R-HSA-8953750 RAM_40585 d01d61f3dbddf63493975cbbcc26d058 1226 Gene3D G3DSA:1.25.40.10 922 1046 1.0E-11 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_42715 881702bd501fdb275597cfc277d779ae 166 Pfam PF00994 Probable molybdopterin binding domain 13 150 1.4E-25 T 13-10-2018 IPR001453 MoaB/Mog domain RAM_42715 881702bd501fdb275597cfc277d779ae 166 SUPERFAMILY SSF53218 10 160 1.15E-33 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily RAM_42715 881702bd501fdb275597cfc277d779ae 166 SMART SM00852 12 156 4.5E-15 T 13-10-2018 IPR001453 MoaB/Mog domain RAM_42715 881702bd501fdb275597cfc277d779ae 166 Gene3D G3DSA:3.40.980.10 6 164 1.0E-45 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily RAM_42715 881702bd501fdb275597cfc277d779ae 166 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 10 149 1.5E-26 T 13-10-2018 IPR001453 MoaB/Mog domain RAM_27950 3bc2184c17f398ae569abd1e83d0469a 294 Gene3D G3DSA:3.40.50.620 2 147 7.5E-27 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAM_27950 3bc2184c17f398ae569abd1e83d0469a 294 Gene3D G3DSA:3.40.50.620 148 294 4.5E-51 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAM_27950 3bc2184c17f398ae569abd1e83d0469a 294 SUPERFAMILY SSF52402 8 147 1.93E-17 T 13-10-2018 RAM_27950 3bc2184c17f398ae569abd1e83d0469a 294 SUPERFAMILY SSF52402 152 291 1.17E-32 T 13-10-2018 RAM_27950 3bc2184c17f398ae569abd1e83d0469a 294 Pfam PF00582 Universal stress protein family 8 144 1.2E-13 T 13-10-2018 IPR006016 UspA RAM_27950 3bc2184c17f398ae569abd1e83d0469a 294 Pfam PF00582 Universal stress protein family 153 289 2.9E-27 T 13-10-2018 IPR006016 UspA RAM_27950 3bc2184c17f398ae569abd1e83d0469a 294 PRINTS PR01438 Universal stress protein signature 249 261 8.9E-17 T 13-10-2018 IPR006015 Universal stress protein A RAM_27950 3bc2184c17f398ae569abd1e83d0469a 294 PRINTS PR01438 Universal stress protein signature 6 24 8.9E-17 T 13-10-2018 IPR006015 Universal stress protein A RAM_27950 3bc2184c17f398ae569abd1e83d0469a 294 PRINTS PR01438 Universal stress protein signature 267 289 8.9E-17 T 13-10-2018 IPR006015 Universal stress protein A RAM_23255 6691f0c845251fe9100db18d4694f2a2 247 Gene3D G3DSA:3.40.140.10 101 245 2.9E-52 T 13-10-2018 RAM_23255 6691f0c845251fe9100db18d4694f2a2 247 SUPERFAMILY SSF53927 1 242 4.21E-73 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 RAM_23255 6691f0c845251fe9100db18d4694f2a2 247 PIRSF PIRSF015626 1 246 2.8E-82 T 13-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 RAM_23255 6691f0c845251fe9100db18d4694f2a2 247 Gene3D G3DSA:3.10.20.10 1 90 4.1E-7 T 13-10-2018 RAM_23255 6691f0c845251fe9100db18d4694f2a2 247 Pfam PF02634 FdhD/NarQ family 1 242 3.3E-81 T 13-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 RAM_23255 6691f0c845251fe9100db18d4694f2a2 247 Hamap MF_00187 Sulfur carrier protein FdhD [fdhD]. 1 243 29.075 T 13-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 RAM_23255 6691f0c845251fe9100db18d4694f2a2 247 TIGRFAM TIGR00129 fdhD_narQ: formate dehydrogenase family accessory protein FdhD 2 242 2.4E-45 T 13-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 RAM_34540 8a1ad05faf786b17bfa2c7f40a336568 276 Gene3D G3DSA:3.10.20.10 30 122 3.2E-6 T 13-10-2018 RAM_34540 8a1ad05faf786b17bfa2c7f40a336568 276 Hamap MF_00187 Sulfur carrier protein FdhD [fdhD]. 4 275 33.782 T 13-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 RAM_34540 8a1ad05faf786b17bfa2c7f40a336568 276 Pfam PF02634 FdhD/NarQ family 28 274 1.7E-82 T 13-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 RAM_34540 8a1ad05faf786b17bfa2c7f40a336568 276 PIRSF PIRSF015626 3 276 9.0E-86 T 13-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 RAM_34540 8a1ad05faf786b17bfa2c7f40a336568 276 SUPERFAMILY SSF53927 6 274 5.72E-79 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 RAM_34540 8a1ad05faf786b17bfa2c7f40a336568 276 TIGRFAM TIGR00129 fdhD_narQ: formate dehydrogenase family accessory protein FdhD 24 274 1.4E-50 T 13-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 RAM_34540 8a1ad05faf786b17bfa2c7f40a336568 276 Gene3D G3DSA:3.40.140.10 127 276 9.6E-53 T 13-10-2018 RAM_03450 d262fa3a86eabbc0835fad3698007939 397 Gene3D G3DSA:3.40.50.300 1 205 1.2E-69 T 13-10-2018 RAM_03450 d262fa3a86eabbc0835fad3698007939 397 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 147 1.2E-13 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 RAM_03450 d262fa3a86eabbc0835fad3698007939 397 SUPERFAMILY SSF50447 207 304 2.7E-30 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RAM_03450 d262fa3a86eabbc0835fad3698007939 397 SUPERFAMILY SSF50465 305 397 2.85E-35 T 13-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal RAM_03450 d262fa3a86eabbc0835fad3698007939 397 Pfam PF03144 Elongation factor Tu domain 2 227 296 6.2E-16 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 RAM_03450 d262fa3a86eabbc0835fad3698007939 397 Pfam PF03143 Elongation factor Tu C-terminal domain 302 395 7.8E-32 T 13-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal RAM_03450 d262fa3a86eabbc0835fad3698007939 397 SUPERFAMILY SSF52540 6 221 2.39E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_03450 d262fa3a86eabbc0835fad3698007939 397 Gene3D G3DSA:2.40.30.10 341 396 7.6E-28 T 13-10-2018 RAM_03450 d262fa3a86eabbc0835fad3698007939 397 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 2 397 1.1E-219 T 13-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 RAM_03450 d262fa3a86eabbc0835fad3698007939 397 PRINTS PR00315 GTP-binding elongation factor signature 80 90 2.7E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_03450 d262fa3a86eabbc0835fad3698007939 397 PRINTS PR00315 GTP-binding elongation factor signature 133 142 2.7E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_03450 d262fa3a86eabbc0835fad3698007939 397 PRINTS PR00315 GTP-binding elongation factor signature 14 27 2.7E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_03450 d262fa3a86eabbc0835fad3698007939 397 PRINTS PR00315 GTP-binding elongation factor signature 96 107 2.7E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_03450 d262fa3a86eabbc0835fad3698007939 397 PRINTS PR00315 GTP-binding elongation factor signature 60 68 2.7E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_03450 d262fa3a86eabbc0835fad3698007939 397 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 397 59.053 T 13-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 RAM_03450 d262fa3a86eabbc0835fad3698007939 397 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 53 68 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site RAM_03450 d262fa3a86eabbc0835fad3698007939 397 Gene3D G3DSA:2.40.30.10 208 337 2.9E-52 T 13-10-2018 RAM_03450 d262fa3a86eabbc0835fad3698007939 397 Pfam PF00009 Elongation factor Tu GTP binding domain 10 203 6.7E-58 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_43010 3cfad2aa10ac3394051993a1925134c8 411 Gene3D G3DSA:3.30.420.40 208 374 1.4E-76 T 13-10-2018 RAM_43010 3cfad2aa10ac3394051993a1925134c8 411 ProSitePatterns PS01125 ROK family signature. 218 245 - T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 RAM_43010 3cfad2aa10ac3394051993a1925134c8 411 Gene3D G3DSA:1.10.10.10 1 78 1.4E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_43010 3cfad2aa10ac3394051993a1925134c8 411 Gene3D G3DSA:3.30.420.40 89 384 1.4E-76 T 13-10-2018 RAM_43010 3cfad2aa10ac3394051993a1925134c8 411 SUPERFAMILY SSF46785 11 74 7.44E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_43010 3cfad2aa10ac3394051993a1925134c8 411 Pfam PF00480 ROK family 85 386 3.5E-49 T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 RAM_43010 3cfad2aa10ac3394051993a1925134c8 411 SUPERFAMILY SSF53067 82 388 3.89E-54 T 13-10-2018 RAM_11060 ffc99d90a4f0b471276561cbfdd641d4 150 SUPERFAMILY SSF55729 7 140 1.36E-16 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_11060 ffc99d90a4f0b471276561cbfdd641d4 150 Pfam PF00583 Acetyltransferase (GNAT) family 46 133 1.1E-6 T 13-10-2018 IPR000182 GNAT domain RAM_11060 ffc99d90a4f0b471276561cbfdd641d4 150 Gene3D G3DSA:3.40.630.30 2 144 8.3E-15 T 13-10-2018 RAM_44155 19d9679a17a0efa30f3830ed938b086a 273 SUPERFAMILY SSF109854 7 161 1.53E-20 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_44155 19d9679a17a0efa30f3830ed938b086a 273 Pfam PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain 18 157 6.9E-16 T 13-10-2018 IPR024344 Mycothiol-dependent maleylpyruvate isomerase, metal-binding domain GO:0046872 RAM_44155 19d9679a17a0efa30f3830ed938b086a 273 Gene3D G3DSA:1.20.120.450 10 163 1.4E-19 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_44155 19d9679a17a0efa30f3830ed938b086a 273 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 18 244 4.4E-24 T 13-10-2018 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type RAM_03510 b86c265ef0e347983f58eb085b80e6a5 122 Pfam PF00238 Ribosomal protein L14p/L23e 2 122 5.0E-54 T 13-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RAM_03510 b86c265ef0e347983f58eb085b80e6a5 122 SMART SM01374 1 122 5.3E-86 T 13-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RAM_03510 b86c265ef0e347983f58eb085b80e6a5 122 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 122 1.1E-56 T 13-10-2018 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 RAM_03510 b86c265ef0e347983f58eb085b80e6a5 122 SUPERFAMILY SSF50193 2 122 4.32E-50 T 13-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 RAM_03510 b86c265ef0e347983f58eb085b80e6a5 122 Gene3D G3DSA:2.40.150.20 1 122 1.1E-52 T 13-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 RAM_03510 b86c265ef0e347983f58eb085b80e6a5 122 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 122 26.248 T 13-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RAM_03510 b86c265ef0e347983f58eb085b80e6a5 122 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 13-10-2018 IPR019972 Ribosomal protein L14P, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_27165 38b4ef9ec17e30030eb14e5fe6714507 323 Gene3D G3DSA:2.40.10.120 21 231 1.1E-61 T 13-10-2018 RAM_27165 38b4ef9ec17e30030eb14e5fe6714507 323 Pfam PF13180 PDZ domain 237 318 2.8E-13 T 13-10-2018 IPR001478 PDZ domain GO:0005515 RAM_27165 38b4ef9ec17e30030eb14e5fe6714507 323 SMART SM00228 237 308 1.1E-10 T 13-10-2018 IPR001478 PDZ domain GO:0005515 RAM_27165 38b4ef9ec17e30030eb14e5fe6714507 323 SUPERFAMILY SSF50156 208 306 9.07E-17 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 RAM_27165 38b4ef9ec17e30030eb14e5fe6714507 323 PRINTS PR00834 HtrA/DegQ protease family signature 125 149 6.7E-41 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAM_27165 38b4ef9ec17e30030eb14e5fe6714507 323 PRINTS PR00834 HtrA/DegQ protease family signature 184 201 6.7E-41 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAM_27165 38b4ef9ec17e30030eb14e5fe6714507 323 PRINTS PR00834 HtrA/DegQ protease family signature 85 105 6.7E-41 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAM_27165 38b4ef9ec17e30030eb14e5fe6714507 323 PRINTS PR00834 HtrA/DegQ protease family signature 64 76 6.7E-41 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAM_27165 38b4ef9ec17e30030eb14e5fe6714507 323 PRINTS PR00834 HtrA/DegQ protease family signature 162 179 6.7E-41 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAM_27165 38b4ef9ec17e30030eb14e5fe6714507 323 PRINTS PR00834 HtrA/DegQ protease family signature 266 278 6.7E-41 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAM_27165 38b4ef9ec17e30030eb14e5fe6714507 323 Gene3D G3DSA:2.30.42.10 235 322 4.9E-20 T 13-10-2018 RAM_27165 38b4ef9ec17e30030eb14e5fe6714507 323 Pfam PF13365 Trypsin-like peptidase domain 55 191 6.3E-28 T 13-10-2018 RAM_27165 38b4ef9ec17e30030eb14e5fe6714507 323 SUPERFAMILY SSF50494 33 230 5.84E-51 T 13-10-2018 IPR009003 Peptidase S1, PA clan RAM_27285 dc572bfaba0d180aaac6b5f8fc3cb851 377 SUPERFAMILY SSF54593 175 331 3.95E-31 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_27285 dc572bfaba0d180aaac6b5f8fc3cb851 377 SUPERFAMILY SSF54593 29 142 6.36E-10 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_27285 dc572bfaba0d180aaac6b5f8fc3cb851 377 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 180 302 4.0E-9 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RAM_27285 dc572bfaba0d180aaac6b5f8fc3cb851 377 Gene3D G3DSA:3.10.180.10 23 147 5.9E-7 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_27285 dc572bfaba0d180aaac6b5f8fc3cb851 377 Gene3D G3DSA:3.10.180.10 175 337 1.1E-38 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_09720 7ab366816738ff9cad60ae9144cf91ec 426 PRINTS PR00173 Glutamate-aspartate symporter signature 10 30 3.9E-23 T 13-10-2018 RAM_09720 7ab366816738ff9cad60ae9144cf91ec 426 PRINTS PR00173 Glutamate-aspartate symporter signature 296 322 3.9E-23 T 13-10-2018 RAM_09720 7ab366816738ff9cad60ae9144cf91ec 426 PRINTS PR00173 Glutamate-aspartate symporter signature 77 102 3.9E-23 T 13-10-2018 RAM_09720 7ab366816738ff9cad60ae9144cf91ec 426 PRINTS PR00173 Glutamate-aspartate symporter signature 331 350 3.9E-23 T 13-10-2018 RAM_09720 7ab366816738ff9cad60ae9144cf91ec 426 PRINTS PR00173 Glutamate-aspartate symporter signature 148 170 3.9E-23 T 13-10-2018 RAM_09720 7ab366816738ff9cad60ae9144cf91ec 426 Gene3D G3DSA:1.10.3860.10 2 420 2.0E-120 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 RAM_09720 7ab366816738ff9cad60ae9144cf91ec 426 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 39 54 - T 13-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site RAM_09720 7ab366816738ff9cad60ae9144cf91ec 426 SUPERFAMILY SSF118215 14 406 1.7E-112 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 RAM_09720 7ab366816738ff9cad60ae9144cf91ec 426 Pfam PF00375 Sodium:dicarboxylate symporter family 14 404 5.3E-108 T 13-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 RAM_09720 7ab366816738ff9cad60ae9144cf91ec 426 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 299 322 - T 13-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site RAM_46530 f06baed0a14f38211a68c20134004fa8 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 7.6E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_46530 f06baed0a14f38211a68c20134004fa8 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 7.6E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_46530 f06baed0a14f38211a68c20134004fa8 204 SUPERFAMILY SSF46689 7 77 5.64E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_46530 f06baed0a14f38211a68c20134004fa8 204 Pfam PF13977 BetI-type transcriptional repressor, C-terminal 125 196 1.9E-6 T 13-10-2018 IPR039538 BetI-type transcriptional repressor, C-terminal RAM_46530 f06baed0a14f38211a68c20134004fa8 204 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 61 1.2E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_46530 f06baed0a14f38211a68c20134004fa8 204 SUPERFAMILY SSF48498 122 198 3.37E-6 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_46530 f06baed0a14f38211a68c20134004fa8 204 Gene3D G3DSA:1.10.357.10 4 202 3.3E-38 T 13-10-2018 RAM_47650 258df8759c0d15a0f9545960e41b6d0b 257 ProSitePatterns PS00730 AP endonucleases family 2 signature 2. 162 169 - T 13-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 RAM_47650 258df8759c0d15a0f9545960e41b6d0b 257 ProSitePatterns PS00729 AP endonucleases family 2 signature 1. 56 64 - T 13-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 RAM_47650 258df8759c0d15a0f9545960e41b6d0b 257 Gene3D G3DSA:3.20.20.150 1 256 1.4E-55 T 13-10-2018 RAM_47650 258df8759c0d15a0f9545960e41b6d0b 257 Pfam PF01261 Xylose isomerase-like TIM barrel 43 217 1.2E-21 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain RAM_47650 258df8759c0d15a0f9545960e41b6d0b 257 SMART SM00518 2 256 2.4E-42 T 13-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 RAM_47650 258df8759c0d15a0f9545960e41b6d0b 257 SUPERFAMILY SSF51658 1 256 5.11E-52 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily RAM_30005 1febc428cda72d42105ab931793e8859 476 SUPERFAMILY SSF53300 46 215 5.04E-22 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RAM_30005 1febc428cda72d42105ab931793e8859 476 Gene3D G3DSA:1.20.120.1690 330 429 8.7E-23 T 13-10-2018 RAM_30005 1febc428cda72d42105ab931793e8859 476 Pfam PF13768 von Willebrand factor type A domain 51 206 5.8E-14 T 13-10-2018 IPR002035 von Willebrand factor, type A RAM_30005 1febc428cda72d42105ab931793e8859 476 SMART SM00327 46 224 1.3E-8 T 13-10-2018 IPR002035 von Willebrand factor, type A RAM_30005 1febc428cda72d42105ab931793e8859 476 Gene3D G3DSA:2.60.40.3670 9 313 2.2E-101 T 13-10-2018 RAM_30005 1febc428cda72d42105ab931793e8859 476 Gene3D G3DSA:3.40.50.410 37 228 2.2E-101 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RAM_47160 7af8d4cf6f8b4a36592d74b83bc6326e 261 Pfam PF00072 Response regulator receiver domain 23 135 1.2E-7 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_47160 7af8d4cf6f8b4a36592d74b83bc6326e 261 Pfam PF00196 Bacterial regulatory proteins, luxR family 178 233 2.9E-18 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_47160 7af8d4cf6f8b4a36592d74b83bc6326e 261 Gene3D G3DSA:3.40.50.12740 22 239 4.7E-41 T 13-10-2018 RAM_47160 7af8d4cf6f8b4a36592d74b83bc6326e 261 SUPERFAMILY SSF46894 170 238 1.97E-20 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_47160 7af8d4cf6f8b4a36592d74b83bc6326e 261 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 193 209 1.3E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_47160 7af8d4cf6f8b4a36592d74b83bc6326e 261 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 209 221 1.3E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_47160 7af8d4cf6f8b4a36592d74b83bc6326e 261 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 193 1.3E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_47160 7af8d4cf6f8b4a36592d74b83bc6326e 261 SMART SM00421 176 233 7.0E-23 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_47160 7af8d4cf6f8b4a36592d74b83bc6326e 261 SUPERFAMILY SSF52172 19 149 2.41E-13 T 13-10-2018 IPR011006 CheY-like superfamily RAM_47160 7af8d4cf6f8b4a36592d74b83bc6326e 261 ProSitePatterns PS00622 LuxR-type HTH domain signature. 193 220 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_06160 536d87c55a7b4d84dc118be1163ae106 204 Gene3D G3DSA:3.10.180.10 1 151 1.6E-16 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_06160 536d87c55a7b4d84dc118be1163ae106 204 Pfam PF13468 Glyoxalase-like domain 2 175 3.3E-43 T 13-10-2018 IPR025870 Glyoxalase-like domain RAM_06160 536d87c55a7b4d84dc118be1163ae106 204 SUPERFAMILY SSF54593 2 109 1.48E-7 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_19745 1a2c2f4791470660506c76e1b7acfe0b 286 Pfam PF00378 Enoyl-CoA hydratase/isomerase 13 262 4.4E-50 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RAM_19745 1a2c2f4791470660506c76e1b7acfe0b 286 SUPERFAMILY SSF52096 2 264 3.45E-74 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_19745 1a2c2f4791470660506c76e1b7acfe0b 286 Gene3D G3DSA:3.90.226.10 1 202 6.5E-65 T 13-10-2018 RAM_19745 1a2c2f4791470660506c76e1b7acfe0b 286 Gene3D G3DSA:1.10.12.10 206 264 1.4E-7 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal RAM_22550 c7aca813234b678c2153fb49382dd0c2 398 Gene3D G3DSA:3.30.360.10 150 289 3.1E-23 T 13-10-2018 RAM_22550 c7aca813234b678c2153fb49382dd0c2 398 SUPERFAMILY SSF51735 9 163 1.06E-25 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_22550 c7aca813234b678c2153fb49382dd0c2 398 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 14 135 6.5E-11 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 RAM_22550 c7aca813234b678c2153fb49382dd0c2 398 SUPERFAMILY SSF55347 140 290 3.05E-15 T 13-10-2018 RAM_22550 c7aca813234b678c2153fb49382dd0c2 398 Gene3D G3DSA:3.40.50.720 3 149 2.8E-21 T 13-10-2018 RAM_47550 cba3e29fd9b216e17ba51a24ae8b15dc 217 Gene3D G3DSA:3.40.50.12740 2 216 6.5E-64 T 13-10-2018 RAM_47550 cba3e29fd9b216e17ba51a24ae8b15dc 217 ProSitePatterns PS00622 LuxR-type HTH domain signature. 170 197 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_47550 cba3e29fd9b216e17ba51a24ae8b15dc 217 Pfam PF00196 Bacterial regulatory proteins, luxR family 155 210 6.2E-16 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_47550 cba3e29fd9b216e17ba51a24ae8b15dc 217 Pfam PF00072 Response regulator receiver domain 4 118 1.6E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_47550 cba3e29fd9b216e17ba51a24ae8b15dc 217 SUPERFAMILY SSF46894 148 216 1.7E-18 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_47550 cba3e29fd9b216e17ba51a24ae8b15dc 217 SMART SM00448 2 117 1.7E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_47550 cba3e29fd9b216e17ba51a24ae8b15dc 217 SUPERFAMILY SSF52172 2 133 8.25E-31 T 13-10-2018 IPR011006 CheY-like superfamily RAM_47550 cba3e29fd9b216e17ba51a24ae8b15dc 217 SMART SM00421 153 210 5.1E-20 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_47550 cba3e29fd9b216e17ba51a24ae8b15dc 217 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 170 186 4.1E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_47550 cba3e29fd9b216e17ba51a24ae8b15dc 217 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 156 170 4.1E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_47550 cba3e29fd9b216e17ba51a24ae8b15dc 217 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 186 198 4.1E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_17690 960e77d0dc83cfcfae0cda3b2cf76c0d 547 Gene3D G3DSA:2.60.120.260 404 547 7.0E-42 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_17690 960e77d0dc83cfcfae0cda3b2cf76c0d 547 Pfam PF03422 Carbohydrate binding module (family 6) 419 547 1.2E-35 T 13-10-2018 IPR005084 Carbohydrate binding module family 6 GO:0030246 RAM_17690 960e77d0dc83cfcfae0cda3b2cf76c0d 547 Gene3D G3DSA:3.30.920.50 235 350 2.9E-102 T 13-10-2018 RAM_17690 960e77d0dc83cfcfae0cda3b2cf76c0d 547 SMART SM00606 411 547 3.8E-46 T 13-10-2018 IPR006584 Cellulose binding, type IV GO:0030246 RAM_17690 960e77d0dc83cfcfae0cda3b2cf76c0d 547 Gene3D G3DSA:2.60.110.10 41 373 2.9E-102 T 13-10-2018 IPR037176 Osmotin/thaumatin-like superfamily RAM_17690 960e77d0dc83cfcfae0cda3b2cf76c0d 547 Pfam PF16483 Beta-1,3-glucanase 35 396 3.1E-112 T 13-10-2018 IPR032477 Beta-1,3-glucanase, N-terminal KEGG: 00500+3.2.1.39 RAM_17690 960e77d0dc83cfcfae0cda3b2cf76c0d 547 SUPERFAMILY SSF49785 411 547 4.08E-32 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_33180 351ed92203eec08fcda275553e294173 501 Gene3D G3DSA:3.40.50.12780 1 403 1.2E-128 T 13-10-2018 RAM_33180 351ed92203eec08fcda275553e294173 501 Gene3D G3DSA:3.30.300.310 406 501 4.5E-32 T 13-10-2018 RAM_33180 351ed92203eec08fcda275553e294173 501 Pfam PF00501 AMP-binding enzyme 8 410 1.4E-110 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_33180 351ed92203eec08fcda275553e294173 501 Pfam PF13193 AMP-binding enzyme C-terminal domain 419 494 8.4E-19 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_33180 351ed92203eec08fcda275553e294173 501 SUPERFAMILY SSF56801 4 501 4.97E-161 T 13-10-2018 RAM_33180 351ed92203eec08fcda275553e294173 501 ProSitePatterns PS00455 Putative AMP-binding domain signature. 162 173 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_31220 b9c211a17171e886be314b90919f78be 234 Gene3D G3DSA:1.10.10.10 149 230 3.6E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_31220 b9c211a17171e886be314b90919f78be 234 Gene3D G3DSA:2.60.120.10 7 148 4.6E-33 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_31220 b9c211a17171e886be314b90919f78be 234 SMART SM00419 169 216 1.0E-5 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RAM_31220 b9c211a17171e886be314b90919f78be 234 SUPERFAMILY SSF51206 12 138 1.83E-30 T 13-10-2018 IPR018490 Cyclic nucleotide-binding-like RAM_31220 b9c211a17171e886be314b90919f78be 234 SMART SM00100 12 130 9.5E-25 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain RAM_31220 b9c211a17171e886be314b90919f78be 234 Pfam PF13545 Crp-like helix-turn-helix domain 151 222 6.2E-13 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RAM_31220 b9c211a17171e886be314b90919f78be 234 Pfam PF00027 Cyclic nucleotide-binding domain 30 116 1.3E-22 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain RAM_31220 b9c211a17171e886be314b90919f78be 234 SUPERFAMILY SSF46785 147 225 9.4E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_35660 1b3fe466d58725b9353d1f670cbc64ed 412 Gene3D G3DSA:1.10.10.2840 285 408 2.2E-27 T 13-10-2018 RAM_35660 1b3fe466d58725b9353d1f670cbc64ed 412 Pfam PF13556 PucR C-terminal helix-turn-helix domain 346 394 6.6E-18 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain RAM_37130 d243382c35b6a44abaf9f4ce3349f060 407 Pfam PF00067 Cytochrome P450 281 373 4.1E-18 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_37130 d243382c35b6a44abaf9f4ce3349f060 407 PRINTS PR00359 B-class P450 signature 198 220 8.6E-53 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_37130 d243382c35b6a44abaf9f4ce3349f060 407 PRINTS PR00359 B-class P450 signature 161 176 8.6E-53 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_37130 d243382c35b6a44abaf9f4ce3349f060 407 PRINTS PR00359 B-class P450 signature 356 367 8.6E-53 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_37130 d243382c35b6a44abaf9f4ce3349f060 407 PRINTS PR00359 B-class P450 signature 298 325 8.6E-53 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_37130 d243382c35b6a44abaf9f4ce3349f060 407 PRINTS PR00359 B-class P450 signature 280 291 8.6E-53 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_37130 d243382c35b6a44abaf9f4ce3349f060 407 PRINTS PR00359 B-class P450 signature 326 341 8.6E-53 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_37130 d243382c35b6a44abaf9f4ce3349f060 407 PRINTS PR00359 B-class P450 signature 97 108 8.6E-53 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_37130 d243382c35b6a44abaf9f4ce3349f060 407 PRINTS PR00359 B-class P450 signature 144 160 8.6E-53 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_37130 d243382c35b6a44abaf9f4ce3349f060 407 PRINTS PR00359 B-class P450 signature 347 356 8.6E-53 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_37130 d243382c35b6a44abaf9f4ce3349f060 407 SUPERFAMILY SSF48264 21 407 1.44E-82 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_37130 d243382c35b6a44abaf9f4ce3349f060 407 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 349 358 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RAM_37130 d243382c35b6a44abaf9f4ce3349f060 407 PRINTS PR00385 P450 superfamily signature 243 260 3.2E-6 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_37130 d243382c35b6a44abaf9f4ce3349f060 407 PRINTS PR00385 P450 superfamily signature 280 291 3.2E-6 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_37130 d243382c35b6a44abaf9f4ce3349f060 407 PRINTS PR00385 P450 superfamily signature 347 356 3.2E-6 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_37130 d243382c35b6a44abaf9f4ce3349f060 407 PRINTS PR00385 P450 superfamily signature 356 367 3.2E-6 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_37130 d243382c35b6a44abaf9f4ce3349f060 407 Gene3D G3DSA:1.10.630.10 14 407 5.4E-109 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_46025 c94b1033bef63ca7cfff922d4c25c0e9 347 Gene3D G3DSA:2.40.50.140 283 337 5.6E-17 T 13-10-2018 RAM_46025 c94b1033bef63ca7cfff922d4c25c0e9 347 SUPERFAMILY SSF52540 6 245 2.99E-85 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_46025 c94b1033bef63ca7cfff922d4c25c0e9 347 SMART SM00382 30 213 1.6E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_46025 c94b1033bef63ca7cfff922d4c25c0e9 347 Pfam PF00005 ABC transporter 21 163 8.5E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_46025 c94b1033bef63ca7cfff922d4c25c0e9 347 SUPERFAMILY SSF50331 240 346 1.7E-15 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal RAM_46025 c94b1033bef63ca7cfff922d4c25c0e9 347 Gene3D G3DSA:3.40.50.300 5 223 9.6E-66 T 13-10-2018 RAM_46025 c94b1033bef63ca7cfff922d4c25c0e9 347 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_46025 c94b1033bef63ca7cfff922d4c25c0e9 347 Gene3D G3DSA:2.40.50.940 224 346 5.6E-17 T 13-10-2018 RAM_46025 c94b1033bef63ca7cfff922d4c25c0e9 347 Pfam PF08402 TOBE domain 276 345 1.4E-9 T 13-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 RAM_09735 dc5350c0e8907f27e1d8a4b49df7b344 287 SUPERFAMILY SSF55447 172 279 1.7E-18 T 13-10-2018 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily RAM_09735 dc5350c0e8907f27e1d8a4b49df7b344 287 Gene3D G3DSA:3.30.465.10 1 167 9.0E-54 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 RAM_09735 dc5350c0e8907f27e1d8a4b49df7b344 287 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 2 166 2.0E-49 T 13-10-2018 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 RAM_09735 dc5350c0e8907f27e1d8a4b49df7b344 287 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 172 274 1.1E-9 T 13-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal RAM_09735 dc5350c0e8907f27e1d8a4b49df7b344 287 Gene3D G3DSA:3.30.390.50 171 279 1.3E-20 T 13-10-2018 RAM_09735 dc5350c0e8907f27e1d8a4b49df7b344 287 SUPERFAMILY SSF56176 2 166 4.76E-52 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RAM_09735 dc5350c0e8907f27e1d8a4b49df7b344 287 SMART SM01092 171 275 6.0E-18 T 13-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal RAM_38905 f031cdaf31bf5c9aecefeb7c3d973b17 138 SUPERFAMILY SSF46785 2 64 2.88E-9 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_38905 f031cdaf31bf5c9aecefeb7c3d973b17 138 Pfam PF13412 Winged helix-turn-helix DNA-binding 2 41 5.1E-9 T 13-10-2018 RAM_38905 f031cdaf31bf5c9aecefeb7c3d973b17 138 Pfam PF01037 Lrp/AsnC ligand binding domain 60 130 5.6E-14 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RAM_38905 f031cdaf31bf5c9aecefeb7c3d973b17 138 SUPERFAMILY SSF54909 55 131 2.95E-16 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_38905 f031cdaf31bf5c9aecefeb7c3d973b17 138 Gene3D G3DSA:3.30.70.920 47 134 5.6E-19 T 13-10-2018 RAM_38905 f031cdaf31bf5c9aecefeb7c3d973b17 138 Gene3D G3DSA:1.10.10.10 1 45 1.1E-11 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_38905 f031cdaf31bf5c9aecefeb7c3d973b17 138 SMART SM00344 2 100 1.5E-23 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RAM_22170 9c030003e077ea19bf3e11589b33125b 220 Gene3D G3DSA:3.40.109.10 3 219 4.0E-56 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RAM_22170 9c030003e077ea19bf3e11589b33125b 220 Pfam PF00881 Nitroreductase family 30 198 2.9E-21 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 RAM_22170 9c030003e077ea19bf3e11589b33125b 220 SUPERFAMILY SSF55469 25 218 2.22E-40 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RAM_21550 92d0d0ff074486a1e76c6c58cc85ca73 197 Hamap MF_00772 Methylated-DNA--protein-cysteine methyltransferase [ogt]. 39 196 36.209 T 13-10-2018 IPR023546 Methylated-DNA--protein-cysteine methyltransferase GO:0003824|GO:0006281 RAM_21550 92d0d0ff074486a1e76c6c58cc85ca73 197 Gene3D G3DSA:3.30.160.70 35 111 3.4E-20 T 13-10-2018 RAM_21550 92d0d0ff074486a1e76c6c58cc85ca73 197 SUPERFAMILY SSF53155 35 112 2.94E-18 T 13-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 RAM_21550 92d0d0ff074486a1e76c6c58cc85ca73 197 Gene3D G3DSA:1.10.10.10 115 197 4.4E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_21550 92d0d0ff074486a1e76c6c58cc85ca73 197 Pfam PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain 36 112 9.6E-12 T 13-10-2018 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 RAM_21550 92d0d0ff074486a1e76c6c58cc85ca73 197 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 118 196 8.8E-27 T 13-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 RAM_21550 92d0d0ff074486a1e76c6c58cc85ca73 197 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 166 172 - T 13-10-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 RAM_21550 92d0d0ff074486a1e76c6c58cc85ca73 197 SUPERFAMILY SSF46767 117 195 4.32E-26 T 13-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 RAM_21550 92d0d0ff074486a1e76c6c58cc85ca73 197 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 118 195 3.9E-30 T 13-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 RAM_36945 0bc661c6f96e1b8933e469a9c7365197 382 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 119 3.2E-25 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_36945 0bc661c6f96e1b8933e469a9c7365197 382 Gene3D G3DSA:2.40.110.10 122 237 3.2E-39 T 13-10-2018 RAM_36945 0bc661c6f96e1b8933e469a9c7365197 382 Gene3D G3DSA:1.10.540.10 1 120 1.0E-26 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_36945 0bc661c6f96e1b8933e469a9c7365197 382 SUPERFAMILY SSF47203 230 380 4.19E-45 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_36945 0bc661c6f96e1b8933e469a9c7365197 382 SUPERFAMILY SSF56645 4 243 8.77E-74 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_36945 0bc661c6f96e1b8933e469a9c7365197 382 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 339 358 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RAM_36945 0bc661c6f96e1b8933e469a9c7365197 382 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 236 380 9.2E-41 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_36945 0bc661c6f96e1b8933e469a9c7365197 382 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 123 220 2.1E-25 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RAM_36945 0bc661c6f96e1b8933e469a9c7365197 382 Gene3D G3DSA:1.20.140.10 238 382 5.4E-43 T 13-10-2018 RAM_19850 882e98b31ff25c2b0e25492f0891c9f5 490 Pfam PF13520 Amino acid permease 33 460 7.9E-54 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RAM_19850 882e98b31ff25c2b0e25492f0891c9f5 490 PIRSF PIRSF006060 32 489 1.1E-44 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RAM_19850 882e98b31ff25c2b0e25492f0891c9f5 490 Gene3D G3DSA:1.20.1740.10 32 477 5.5E-27 T 13-10-2018 RAM_11585 5c82b8736a5d27a19e7f650d142b77fb 158 Pfam PF00583 Acetyltransferase (GNAT) family 42 151 5.1E-7 T 13-10-2018 IPR000182 GNAT domain RAM_11585 5c82b8736a5d27a19e7f650d142b77fb 158 SUPERFAMILY SSF55729 15 152 3.54E-17 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_11585 5c82b8736a5d27a19e7f650d142b77fb 158 Gene3D G3DSA:3.40.630.30 1 157 7.2E-16 T 13-10-2018 RAM_36960 dd2c98928c37f73afa1a12f461f85ecf 1008 Gene3D G3DSA:3.30.300.30 892 993 4.6E-27 T 13-10-2018 RAM_36960 dd2c98928c37f73afa1a12f461f85ecf 1008 Gene3D G3DSA:3.30.300.310 394 492 1.4E-28 T 13-10-2018 RAM_36960 dd2c98928c37f73afa1a12f461f85ecf 1008 Gene3D G3DSA:3.40.50.12780 495 891 5.3E-62 T 13-10-2018 RAM_36960 dd2c98928c37f73afa1a12f461f85ecf 1008 SUPERFAMILY SSF56801 3 493 4.45E-110 T 13-10-2018 RAM_36960 dd2c98928c37f73afa1a12f461f85ecf 1008 SUPERFAMILY SSF56801 504 994 8.77E-100 T 13-10-2018 RAM_36960 dd2c98928c37f73afa1a12f461f85ecf 1008 Gene3D G3DSA:3.40.50.12780 1 393 6.0E-77 T 13-10-2018 RAM_36960 dd2c98928c37f73afa1a12f461f85ecf 1008 Pfam PF13193 AMP-binding enzyme C-terminal domain 406 481 4.5E-19 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_36960 dd2c98928c37f73afa1a12f461f85ecf 1008 Pfam PF13193 AMP-binding enzyme C-terminal domain 908 982 1.4E-17 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_36960 dd2c98928c37f73afa1a12f461f85ecf 1008 Pfam PF00501 AMP-binding enzyme 52 397 3.0E-61 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_36960 dd2c98928c37f73afa1a12f461f85ecf 1008 Pfam PF00501 AMP-binding enzyme 511 898 8.8E-49 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_36960 dd2c98928c37f73afa1a12f461f85ecf 1008 ProSitePatterns PS00455 Putative AMP-binding domain signature. 659 670 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_36960 dd2c98928c37f73afa1a12f461f85ecf 1008 ProSitePatterns PS00455 Putative AMP-binding domain signature. 144 155 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_19790 53831994c8e0d0de65d998facaa5284b 217 Gene3D G3DSA:1.10.357.10 14 215 4.4E-31 T 13-10-2018 RAM_19790 53831994c8e0d0de65d998facaa5284b 217 SUPERFAMILY SSF48498 102 194 1.14E-7 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_19790 53831994c8e0d0de65d998facaa5284b 217 SUPERFAMILY SSF46689 15 88 6.16E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_19790 53831994c8e0d0de65d998facaa5284b 217 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 48 71 4.3E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_19790 53831994c8e0d0de65d998facaa5284b 217 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 27 40 4.3E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_19790 53831994c8e0d0de65d998facaa5284b 217 Pfam PF13977 BetI-type transcriptional repressor, C-terminal 102 198 9.1E-9 T 13-10-2018 IPR039538 BetI-type transcriptional repressor, C-terminal RAM_19790 53831994c8e0d0de65d998facaa5284b 217 Pfam PF00440 Bacterial regulatory proteins, tetR family 27 73 3.1E-13 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_25705 833dcfa4be6fe68b162f276558bc2982 737 SUPERFAMILY SSF54556 625 696 4.51E-11 T 13-10-2018 IPR029070 Chitinase insertion domain superfamily RAM_25705 833dcfa4be6fe68b162f276558bc2982 737 Gene3D G3DSA:2.60.40.290 20 120 1.9E-17 T 13-10-2018 IPR012291 CBM2, carbohydrate-binding domain superfamily GO:0004553|GO:0030247 RAM_25705 833dcfa4be6fe68b162f276558bc2982 737 Gene3D G3DSA:2.60.40.10 121 209 1.3E-22 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_25705 833dcfa4be6fe68b162f276558bc2982 737 Gene3D G3DSA:2.60.40.10 217 303 2.1E-25 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_25705 833dcfa4be6fe68b162f276558bc2982 737 Pfam PF00704 Glycosyl hydrolases family 18 313 724 3.8E-77 T 13-10-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 RAM_25705 833dcfa4be6fe68b162f276558bc2982 737 SUPERFAMILY SSF51445 306 725 4.88E-87 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_25705 833dcfa4be6fe68b162f276558bc2982 737 SMART SM00636 310 724 1.3E-121 T 13-10-2018 IPR011583 Chitinase II GO:0008061 RAM_25705 833dcfa4be6fe68b162f276558bc2982 737 Gene3D G3DSA:3.10.50.10 633 705 1.3E-141 T 13-10-2018 IPR029070 Chitinase insertion domain superfamily RAM_25705 833dcfa4be6fe68b162f276558bc2982 737 SUPERFAMILY SSF49265 122 303 9.43E-28 T 13-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 RAM_25705 833dcfa4be6fe68b162f276558bc2982 737 SMART SM00060 124 198 2.7E-10 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 RAM_25705 833dcfa4be6fe68b162f276558bc2982 737 SMART SM00060 219 293 1.4E-11 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 RAM_25705 833dcfa4be6fe68b162f276558bc2982 737 Gene3D G3DSA:3.20.20.80 313 731 1.3E-141 T 13-10-2018 RAM_25705 833dcfa4be6fe68b162f276558bc2982 737 SUPERFAMILY SSF49384 19 116 6.98E-12 T 13-10-2018 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily GO:0030246 RAM_25705 833dcfa4be6fe68b162f276558bc2982 737 Pfam PF00553 Cellulose binding domain 28 116 1.8E-10 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_25705 833dcfa4be6fe68b162f276558bc2982 737 Pfam PF00041 Fibronectin type III domain 220 289 2.9E-7 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 RAM_25705 833dcfa4be6fe68b162f276558bc2982 737 Pfam PF00041 Fibronectin type III domain 126 201 2.9E-9 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 RAM_25705 833dcfa4be6fe68b162f276558bc2982 737 SMART SM00637 21 116 2.1E-7 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_25705 833dcfa4be6fe68b162f276558bc2982 737 ProSitePatterns PS01095 Chitinases family 18 active site. 480 488 - T 13-10-2018 IPR001579 Glycoside hydrolase, chitinase active site GO:0004553|GO:0005975 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 RAM_35875 0eab0775da7cefb5df05e75b92113b78 217 SUPERFAMILY SSF48008 83 215 2.22E-29 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_35875 0eab0775da7cefb5df05e75b92113b78 217 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 73 5.2E-15 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_35875 0eab0775da7cefb5df05e75b92113b78 217 SMART SM00345 15 73 7.8E-10 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_35875 0eab0775da7cefb5df05e75b92113b78 217 SUPERFAMILY SSF46785 9 100 7.03E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_35875 0eab0775da7cefb5df05e75b92113b78 217 SMART SM00895 83 207 3.2E-23 T 13-10-2018 IPR011711 GntR, C-terminal RAM_35875 0eab0775da7cefb5df05e75b92113b78 217 Pfam PF07729 FCD domain 84 205 2.0E-28 T 13-10-2018 IPR011711 GntR, C-terminal RAM_35875 0eab0775da7cefb5df05e75b92113b78 217 Gene3D G3DSA:1.20.120.530 81 217 4.2E-33 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_35875 0eab0775da7cefb5df05e75b92113b78 217 Gene3D G3DSA:1.10.10.10 4 73 7.4E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_09530 69d39f015724b642a59fd1bb34414f56 518 Gene3D G3DSA:2.60.120.260 23 150 2.6E-36 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_09530 69d39f015724b642a59fd1bb34414f56 518 Gene3D G3DSA:3.60.21.10 248 511 2.7E-37 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like RAM_09530 69d39f015724b642a59fd1bb34414f56 518 SMART SM00060 161 234 2.6E-8 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 RAM_09530 69d39f015724b642a59fd1bb34414f56 518 SUPERFAMILY SSF56300 273 510 6.46E-42 T 13-10-2018 RAM_09530 69d39f015724b642a59fd1bb34414f56 518 Pfam PF00149 Calcineurin-like phosphoesterase 275 438 1.6E-8 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 RAM_09530 69d39f015724b642a59fd1bb34414f56 518 SUPERFAMILY SSF49785 29 151 1.49E-26 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_09530 69d39f015724b642a59fd1bb34414f56 518 Pfam PF00041 Fibronectin type III domain 164 237 1.7E-5 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 RAM_09530 69d39f015724b642a59fd1bb34414f56 518 Pfam PF00754 F5/8 type C domain 33 145 2.3E-23 T 13-10-2018 IPR000421 Coagulation factor 5/8 C-terminal domain RAM_09530 69d39f015724b642a59fd1bb34414f56 518 Gene3D G3DSA:2.60.40.10 158 245 5.7E-23 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_09530 69d39f015724b642a59fd1bb34414f56 518 SUPERFAMILY SSF49265 159 246 6.51E-16 T 13-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 RAM_04715 58723dcb17e664a67664dc545445a0f7 504 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 4 499 1.0E-224 T 13-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 RAM_04715 58723dcb17e664a67664dc545445a0f7 504 Hamap MF_00186 Glycerol kinase [glpK]. 2 500 55.453 T 13-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 RAM_04715 58723dcb17e664a67664dc545445a0f7 504 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 263 453 2.0E-64 T 13-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 RAM_04715 58723dcb17e664a67664dc545445a0f7 504 Gene3D G3DSA:3.30.420.40 2 255 2.5E-109 T 13-10-2018 RAM_04715 58723dcb17e664a67664dc545445a0f7 504 SUPERFAMILY SSF53067 4 257 4.07E-88 T 13-10-2018 RAM_04715 58723dcb17e664a67664dc545445a0f7 504 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 254 8.7E-76 T 13-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 RAM_04715 58723dcb17e664a67664dc545445a0f7 504 PIRSF PIRSF000538 2 504 5.4E-171 T 13-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 RAM_04715 58723dcb17e664a67664dc545445a0f7 504 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 135 147 - T 13-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 RAM_04715 58723dcb17e664a67664dc545445a0f7 504 Gene3D G3DSA:3.30.420.40 256 504 1.9E-95 T 13-10-2018 RAM_04715 58723dcb17e664a67664dc545445a0f7 504 SUPERFAMILY SSF53067 257 500 2.18E-85 T 13-10-2018 RAM_04715 58723dcb17e664a67664dc545445a0f7 504 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 365 385 - T 13-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 RAM_08770 3769c31cd0864c441a8d4c1046a68e65 317 PRINTS PR00502 NUDIX hydrolase family signature 47 62 1.2E-5 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RAM_08770 3769c31cd0864c441a8d4c1046a68e65 317 PRINTS PR00502 NUDIX hydrolase family signature 33 47 1.2E-5 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RAM_08770 3769c31cd0864c441a8d4c1046a68e65 317 SMART SM00855 142 256 1.3E-11 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 RAM_08770 3769c31cd0864c441a8d4c1046a68e65 317 Gene3D G3DSA:3.40.50.1240 141 303 5.7E-31 T 13-10-2018 IPR029033 Histidine phosphatase superfamily RAM_08770 3769c31cd0864c441a8d4c1046a68e65 317 SUPERFAMILY SSF55811 6 135 2.98E-31 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RAM_08770 3769c31cd0864c441a8d4c1046a68e65 317 Gene3D G3DSA:3.90.79.10 3 137 2.1E-38 T 13-10-2018 RAM_08770 3769c31cd0864c441a8d4c1046a68e65 317 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RAM_08770 3769c31cd0864c441a8d4c1046a68e65 317 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 143 220 4.2E-11 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 RAM_08770 3769c31cd0864c441a8d4c1046a68e65 317 Pfam PF00293 NUDIX domain 6 132 5.2E-21 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RAM_08770 3769c31cd0864c441a8d4c1046a68e65 317 SUPERFAMILY SSF53254 141 272 3.53E-19 T 13-10-2018 IPR029033 Histidine phosphatase superfamily RAM_37265 adb7778c0f08eb9911fcaf22929aaecd 420 Pfam PF07690 Major Facilitator Superfamily 30 274 4.4E-23 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_37265 adb7778c0f08eb9911fcaf22929aaecd 420 Gene3D G3DSA:1.20.1250.20 21 215 4.9E-19 T 13-10-2018 RAM_37265 adb7778c0f08eb9911fcaf22929aaecd 420 SUPERFAMILY SSF103473 23 418 3.14E-47 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_37265 adb7778c0f08eb9911fcaf22929aaecd 420 Gene3D G3DSA:1.20.1250.20 221 419 5.5E-24 T 13-10-2018 RAM_46055 31d90e0e3a4e0df1ea59b7b08d9ca40e 447 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 314 403 1.5E-17 T 13-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 RAM_46055 31d90e0e3a4e0df1ea59b7b08d9ca40e 447 Gene3D G3DSA:2.40.37.10 38 441 6.7E-139 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 RAM_46055 31d90e0e3a4e0df1ea59b7b08d9ca40e 447 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 39 446 37.149 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RAM_46055 31d90e0e3a4e0df1ea59b7b08d9ca40e 447 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 303 322 3.2E-18 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RAM_46055 31d90e0e3a4e0df1ea59b7b08d9ca40e 447 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 403 416 3.2E-18 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RAM_46055 31d90e0e3a4e0df1ea59b7b08d9ca40e 447 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 214 227 3.2E-18 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RAM_46055 31d90e0e3a4e0df1ea59b7b08d9ca40e 447 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 79 97 3.2E-18 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RAM_46055 31d90e0e3a4e0df1ea59b7b08d9ca40e 447 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 99 111 3.2E-18 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RAM_46055 31d90e0e3a4e0df1ea59b7b08d9ca40e 447 Gene3D G3DSA:3.20.20.10 58 313 6.7E-139 T 13-10-2018 IPR029066 PLP-binding barrel RAM_46055 31d90e0e3a4e0df1ea59b7b08d9ca40e 447 SUPERFAMILY SSF51419 50 315 7.07E-72 T 13-10-2018 IPR029066 PLP-binding barrel RAM_46055 31d90e0e3a4e0df1ea59b7b08d9ca40e 447 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 59 313 7.8E-59 T 13-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 RAM_46055 31d90e0e3a4e0df1ea59b7b08d9ca40e 447 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 31 444 1.7E-119 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RAM_46055 31d90e0e3a4e0df1ea59b7b08d9ca40e 447 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 79 97 - T 13-10-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site RAM_46055 31d90e0e3a4e0df1ea59b7b08d9ca40e 447 SUPERFAMILY SSF50621 288 445 4.6E-46 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 RAM_46055 31d90e0e3a4e0df1ea59b7b08d9ca40e 447 PRINTS PR01181 Diaminopimelate decarboxylase signature 97 114 1.5E-21 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RAM_46055 31d90e0e3a4e0df1ea59b7b08d9ca40e 447 PRINTS PR01181 Diaminopimelate decarboxylase signature 330 348 1.5E-21 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RAM_46055 31d90e0e3a4e0df1ea59b7b08d9ca40e 447 PRINTS PR01181 Diaminopimelate decarboxylase signature 183 192 1.5E-21 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RAM_46055 31d90e0e3a4e0df1ea59b7b08d9ca40e 447 PRINTS PR01181 Diaminopimelate decarboxylase signature 413 435 1.5E-21 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RAM_30400 01e675342b43a0728aa0f43863196903 752 Gene3D G3DSA:3.10.170.10 191 333 6.3E-21 T 13-10-2018 RAM_30400 01e675342b43a0728aa0f43863196903 752 Pfam PF02868 Thermolysin metallopeptidase, alpha-helical domain 342 500 7.3E-28 T 13-10-2018 IPR001570 Peptidase M4, C-terminal GO:0004222 RAM_30400 01e675342b43a0728aa0f43863196903 752 Pfam PF07504 Fungalysin/Thermolysin Propeptide Motif 69 101 2.1E-6 T 13-10-2018 IPR011096 FTP domain RAM_30400 01e675342b43a0728aa0f43863196903 752 Pfam PF01447 Thermolysin metallopeptidase, catalytic domain 200 328 1.1E-22 T 13-10-2018 IPR013856 Peptidase M4 domain GO:0004222 RAM_30400 01e675342b43a0728aa0f43863196903 752 Gene3D G3DSA:2.60.40.10 508 598 3.5E-18 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_30400 01e675342b43a0728aa0f43863196903 752 Gene3D G3DSA:2.60.120.260 603 750 1.7E-10 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_30400 01e675342b43a0728aa0f43863196903 752 SUPERFAMILY SSF49313 516 597 8.95E-8 T 13-10-2018 IPR015919 Cadherin-like superfamily GO:0005509|GO:0016020 RAM_30400 01e675342b43a0728aa0f43863196903 752 Pfam PF05345 Putative Ig domain 545 584 2.1E-10 T 13-10-2018 IPR008009 Putative Ig RAM_30400 01e675342b43a0728aa0f43863196903 752 Gene3D G3DSA:1.10.390.10 338 500 4.4E-33 T 13-10-2018 IPR027268 Peptidase M4/M1, CTD superfamily RAM_30400 01e675342b43a0728aa0f43863196903 752 SUPERFAMILY SSF55486 188 500 6.59E-52 T 13-10-2018 RAM_21830 a4770c2245e57523da2b9383601ebd13 155 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 3 139 3.4E-10 T 13-10-2018 IPR019587 Polyketide cyclase/dehydrase RAM_21830 a4770c2245e57523da2b9383601ebd13 155 SUPERFAMILY SSF55961 3 143 8.17E-23 T 13-10-2018 RAM_21830 a4770c2245e57523da2b9383601ebd13 155 Gene3D G3DSA:3.30.530.20 2 151 2.1E-13 T 13-10-2018 IPR023393 START-like domain superfamily RAM_06970 4e27b91b7c00633a18de4ebb139b6287 206 Gene3D G3DSA:3.40.50.1820 10 132 2.1E-18 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_06970 4e27b91b7c00633a18de4ebb139b6287 206 Pfam PF00975 Thioesterase domain 12 118 3.1E-11 T 13-10-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 RAM_06970 4e27b91b7c00633a18de4ebb139b6287 206 SUPERFAMILY SSF53474 8 146 6.73E-13 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_31405 f336e9321f9cf02df160cef62fde4c6e 499 SMART SM00316 299 370 1.0E-22 T 13-10-2018 IPR022967 RNA-binding domain, S1 RAM_31405 f336e9321f9cf02df160cef62fde4c6e 499 SMART SM00316 128 195 1.6E-9 T 13-10-2018 IPR022967 RNA-binding domain, S1 RAM_31405 f336e9321f9cf02df160cef62fde4c6e 499 SMART SM00316 41 112 3.2E-17 T 13-10-2018 IPR022967 RNA-binding domain, S1 RAM_31405 f336e9321f9cf02df160cef62fde4c6e 499 SMART SM00316 214 284 8.9E-28 T 13-10-2018 IPR022967 RNA-binding domain, S1 RAM_31405 f336e9321f9cf02df160cef62fde4c6e 499 SUPERFAMILY SSF50249 114 198 3.36E-14 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_31405 f336e9321f9cf02df160cef62fde4c6e 499 PRINTS PR00681 Ribosomal protein S1 signature 314 333 1.7E-87 T 13-10-2018 RAM_31405 f336e9321f9cf02df160cef62fde4c6e 499 PRINTS PR00681 Ribosomal protein S1 signature 179 199 1.7E-87 T 13-10-2018 RAM_31405 f336e9321f9cf02df160cef62fde4c6e 499 PRINTS PR00681 Ribosomal protein S1 signature 61 75 1.7E-87 T 13-10-2018 RAM_31405 f336e9321f9cf02df160cef62fde4c6e 499 PRINTS PR00681 Ribosomal protein S1 signature 43 61 1.7E-87 T 13-10-2018 RAM_31405 f336e9321f9cf02df160cef62fde4c6e 499 PRINTS PR00681 Ribosomal protein S1 signature 109 128 1.7E-87 T 13-10-2018 RAM_31405 f336e9321f9cf02df160cef62fde4c6e 499 PRINTS PR00681 Ribosomal protein S1 signature 133 149 1.7E-87 T 13-10-2018 RAM_31405 f336e9321f9cf02df160cef62fde4c6e 499 PRINTS PR00681 Ribosomal protein S1 signature 236 257 1.7E-87 T 13-10-2018 RAM_31405 f336e9321f9cf02df160cef62fde4c6e 499 PRINTS PR00681 Ribosomal protein S1 signature 353 371 1.7E-87 T 13-10-2018 RAM_31405 f336e9321f9cf02df160cef62fde4c6e 499 PRINTS PR00681 Ribosomal protein S1 signature 150 167 1.7E-87 T 13-10-2018 RAM_31405 f336e9321f9cf02df160cef62fde4c6e 499 Pfam PF00575 S1 RNA binding domain 214 284 5.6E-26 T 13-10-2018 IPR003029 S1 domain GO:0003676 RAM_31405 f336e9321f9cf02df160cef62fde4c6e 499 Pfam PF00575 S1 RNA binding domain 40 112 1.2E-15 T 13-10-2018 IPR003029 S1 domain GO:0003676 RAM_31405 f336e9321f9cf02df160cef62fde4c6e 499 Pfam PF00575 S1 RNA binding domain 128 195 1.3E-13 T 13-10-2018 IPR003029 S1 domain GO:0003676 RAM_31405 f336e9321f9cf02df160cef62fde4c6e 499 Pfam PF00575 S1 RNA binding domain 298 370 2.2E-21 T 13-10-2018 IPR003029 S1 domain GO:0003676 RAM_31405 f336e9321f9cf02df160cef62fde4c6e 499 SUPERFAMILY SSF50249 214 296 3.98E-27 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_31405 f336e9321f9cf02df160cef62fde4c6e 499 Gene3D G3DSA:2.40.50.140 291 374 7.2E-28 T 13-10-2018 RAM_31405 f336e9321f9cf02df160cef62fde4c6e 499 SUPERFAMILY SSF50249 35 137 1.12E-22 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_31405 f336e9321f9cf02df160cef62fde4c6e 499 Gene3D G3DSA:2.40.50.140 29 124 4.3E-23 T 13-10-2018 RAM_31405 f336e9321f9cf02df160cef62fde4c6e 499 Gene3D G3DSA:2.40.50.140 125 207 1.3E-10 T 13-10-2018 RAM_31405 f336e9321f9cf02df160cef62fde4c6e 499 SUPERFAMILY SSF50249 284 372 3.43E-24 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_31405 f336e9321f9cf02df160cef62fde4c6e 499 Gene3D G3DSA:2.40.50.140 211 290 4.0E-30 T 13-10-2018 RAM_13795 71869bda6d09c39476ef9a74fff89c5a 886 SUPERFAMILY SSF101353 249 467 1.83E-57 T 13-10-2018 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7 RAM_13795 71869bda6d09c39476ef9a74fff89c5a 886 Pfam PF01411 tRNA synthetases class II (A) 5 563 2.1E-195 T 13-10-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 RAM_13795 71869bda6d09c39476ef9a74fff89c5a 886 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 661 704 9.5E-14 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 RAM_13795 71869bda6d09c39476ef9a74fff89c5a 886 Gene3D G3DSA:3.30.930.10 1 245 4.8E-90 T 13-10-2018 RAM_13795 71869bda6d09c39476ef9a74fff89c5a 886 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 5 865 1.7E-256 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 RAM_13795 71869bda6d09c39476ef9a74fff89c5a 886 Gene3D G3DSA:3.10.310.40 771 884 1.9E-26 T 13-10-2018 RAM_13795 71869bda6d09c39476ef9a74fff89c5a 886 Gene3D G3DSA:3.30.980.10 561 720 4.2E-37 T 13-10-2018 RAM_13795 71869bda6d09c39476ef9a74fff89c5a 886 SMART SM00863 661 704 4.1E-17 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 RAM_13795 71869bda6d09c39476ef9a74fff89c5a 886 Pfam PF02272 DHHA1 domain 744 882 6.9E-21 T 13-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 RAM_13795 71869bda6d09c39476ef9a74fff89c5a 886 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 886 165.68 T 13-10-2018 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 RAM_13795 71869bda6d09c39476ef9a74fff89c5a 886 PRINTS PR00980 Alanyl-tRNA synthetase signature 69 80 3.4E-26 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 RAM_13795 71869bda6d09c39476ef9a74fff89c5a 886 PRINTS PR00980 Alanyl-tRNA synthetase signature 279 295 3.4E-26 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 RAM_13795 71869bda6d09c39476ef9a74fff89c5a 886 PRINTS PR00980 Alanyl-tRNA synthetase signature 196 207 3.4E-26 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 RAM_13795 71869bda6d09c39476ef9a74fff89c5a 886 PRINTS PR00980 Alanyl-tRNA synthetase signature 229 242 3.4E-26 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 RAM_13795 71869bda6d09c39476ef9a74fff89c5a 886 PRINTS PR00980 Alanyl-tRNA synthetase signature 303 316 3.4E-26 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 RAM_13795 71869bda6d09c39476ef9a74fff89c5a 886 SUPERFAMILY SSF55681 2 248 7.21E-86 T 13-10-2018 RAM_13795 71869bda6d09c39476ef9a74fff89c5a 886 SUPERFAMILY SSF55186 560 721 7.46E-43 T 13-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 RAM_13795 71869bda6d09c39476ef9a74fff89c5a 886 Gene3D G3DSA:2.40.30.130 455 560 7.1E-13 T 13-10-2018 RAM_13795 71869bda6d09c39476ef9a74fff89c5a 886 SUPERFAMILY SSF50447 460 559 3.14E-19 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RAM_36865 46805e65ddf4702d47b1d68caad5452f 272 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 268 1.2E-55 T 13-10-2018 RAM_36865 46805e65ddf4702d47b1d68caad5452f 272 SUPERFAMILY SSF51735 5 269 1.13E-73 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_36865 46805e65ddf4702d47b1d68caad5452f 272 TIGRFAM TIGR03971 SDR_subfam_1: SDR family mycofactocin-dependent oxidoreductase 6 270 3.2E-108 T 13-10-2018 IPR023985 Mycofactocin-dependent oxidoreductase RAM_36865 46805e65ddf4702d47b1d68caad5452f 272 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 158 186 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_36865 46805e65ddf4702d47b1d68caad5452f 272 Gene3D G3DSA:3.40.50.720 4 271 1.2E-80 T 13-10-2018 RAM_36865 46805e65ddf4702d47b1d68caad5452f 272 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 97 108 6.1E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36865 46805e65ddf4702d47b1d68caad5452f 272 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 159 6.1E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36865 46805e65ddf4702d47b1d68caad5452f 272 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 190 6.1E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36865 46805e65ddf4702d47b1d68caad5452f 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 9.7E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36865 46805e65ddf4702d47b1d68caad5452f 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 145 161 9.7E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36865 46805e65ddf4702d47b1d68caad5452f 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 97 108 9.7E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36865 46805e65ddf4702d47b1d68caad5452f 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 232 252 9.7E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36865 46805e65ddf4702d47b1d68caad5452f 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 190 9.7E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36865 46805e65ddf4702d47b1d68caad5452f 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 192 209 9.7E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_43305 0b56a7121422661930f516ab2a6845a5 512 Pfam PF09286 Pro-kumamolisin, activation domain 9 134 7.7E-8 T 13-10-2018 IPR015366 Peptidase S53, activation domain GO:0008236 Reactome: R-HSA-381038 RAM_43305 0b56a7121422661930f516ab2a6845a5 512 SUPERFAMILY SSF52743 154 506 2.23E-63 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RAM_43305 0b56a7121422661930f516ab2a6845a5 512 Gene3D G3DSA:3.40.50.200 149 509 5.8E-106 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RAM_43305 0b56a7121422661930f516ab2a6845a5 512 SMART SM00944 3 135 1.5E-17 T 13-10-2018 IPR015366 Peptidase S53, activation domain GO:0008236 Reactome: R-HSA-381038 RAM_43305 0b56a7121422661930f516ab2a6845a5 512 SUPERFAMILY SSF54897 3 147 2.04E-26 T 13-10-2018 RAM_11320 f53274fba11ea394d5c5e6a4cc4ab1df 203 Gene3D G3DSA:3.90.79.10 1 110 1.2E-25 T 13-10-2018 RAM_11320 f53274fba11ea394d5c5e6a4cc4ab1df 203 Pfam PF00293 NUDIX domain 1 99 3.9E-10 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RAM_11320 f53274fba11ea394d5c5e6a4cc4ab1df 203 Gene3D G3DSA:1.10.10.10 113 196 5.4E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_11320 f53274fba11ea394d5c5e6a4cc4ab1df 203 SUPERFAMILY SSF46785 120 190 4.08E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_11320 f53274fba11ea394d5c5e6a4cc4ab1df 203 SUPERFAMILY SSF55811 1 116 8.12E-27 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RAM_37270 6ab28635744d453c4f6b269d2706eec6 328 SUPERFAMILY SSF47413 1 56 2.25E-12 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_37270 6ab28635744d453c4f6b269d2706eec6 328 Gene3D G3DSA:3.40.50.2300 154 318 3.8E-55 T 13-10-2018 RAM_37270 6ab28635744d453c4f6b269d2706eec6 328 Pfam PF13377 Periplasmic binding protein-like domain 162 321 3.0E-35 T 13-10-2018 RAM_37270 6ab28635744d453c4f6b269d2706eec6 328 SMART SM00354 1 68 1.4E-9 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_37270 6ab28635744d453c4f6b269d2706eec6 328 Gene3D G3DSA:3.40.50.2300 66 313 3.8E-55 T 13-10-2018 RAM_37270 6ab28635744d453c4f6b269d2706eec6 328 SUPERFAMILY SSF53822 65 325 2.01E-48 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_37270 6ab28635744d453c4f6b269d2706eec6 328 Pfam PF00356 Bacterial regulatory proteins, lacI family 1 45 5.0E-8 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_37270 6ab28635744d453c4f6b269d2706eec6 328 Gene3D G3DSA:1.10.260.40 1 56 2.0E-16 T 13-10-2018 RAM_08470 32852fbd6d6aab39c7da8ddd1ed249c5 329 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 25 319 5.2E-15 T 13-10-2018 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 RAM_08470 32852fbd6d6aab39c7da8ddd1ed249c5 329 SUPERFAMILY SSF51726 47 322 1.7E-24 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 RAM_08470 32852fbd6d6aab39c7da8ddd1ed249c5 329 Gene3D G3DSA:3.20.20.210 56 324 2.2E-22 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 RAM_42360 34e22f8811d287bd110b586fd78b6e7c 278 SMART SM00650 35 209 4.5E-68 T 13-10-2018 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 RAM_42360 34e22f8811d287bd110b586fd78b6e7c 278 SUPERFAMILY SSF53335 19 276 2.19E-65 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_42360 34e22f8811d287bd110b586fd78b6e7c 278 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 19 278 47.852 T 13-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 RAM_42360 34e22f8811d287bd110b586fd78b6e7c 278 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 51 78 - T 13-10-2018 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 RAM_42360 34e22f8811d287bd110b586fd78b6e7c 278 Pfam PF00398 Ribosomal RNA adenine dimethylase 23 275 4.6E-47 T 13-10-2018 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm RAM_42360 34e22f8811d287bd110b586fd78b6e7c 278 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 19 276 2.0E-77 T 13-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 RAM_42360 34e22f8811d287bd110b586fd78b6e7c 278 Gene3D G3DSA:1.10.8.100 215 278 6.2E-20 T 13-10-2018 IPR023165 rRNA adenine dimethylase-like Reactome: R-HSA-2151201|Reactome: R-HSA-6793080 RAM_42360 34e22f8811d287bd110b586fd78b6e7c 278 Gene3D G3DSA:3.40.50.150 1 211 1.6E-58 T 13-10-2018 RAM_28935 1dfde2c37c2c1c317d1a234e3645599e 454 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 348 453 3.4E-17 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_28935 1dfde2c37c2c1c317d1a234e3645599e 454 SMART SM00304 184 237 2.8E-9 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_28935 1dfde2c37c2c1c317d1a234e3645599e 454 SUPERFAMILY SSF47384 221 307 9.61E-13 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RAM_28935 1dfde2c37c2c1c317d1a234e3645599e 454 Pfam PF00512 His Kinase A (phospho-acceptor) domain 240 308 4.5E-11 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_28935 1dfde2c37c2c1c317d1a234e3645599e 454 Pfam PF00672 HAMP domain 184 234 1.2E-9 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_28935 1dfde2c37c2c1c317d1a234e3645599e 454 Gene3D G3DSA:1.10.287.130 188 310 1.3E-24 T 13-10-2018 RAM_28935 1dfde2c37c2c1c317d1a234e3645599e 454 SUPERFAMILY SSF158472 184 234 4.18E-6 T 13-10-2018 RAM_28935 1dfde2c37c2c1c317d1a234e3645599e 454 SUPERFAMILY SSF55874 308 453 3.41E-31 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_28935 1dfde2c37c2c1c317d1a234e3645599e 454 SMART SM00387 348 454 1.2E-29 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_28935 1dfde2c37c2c1c317d1a234e3645599e 454 Gene3D G3DSA:3.30.565.10 311 454 4.1E-29 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_28935 1dfde2c37c2c1c317d1a234e3645599e 454 PRINTS PR00344 Bacterial sensor protein C-terminal signature 414 432 2.5E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_28935 1dfde2c37c2c1c317d1a234e3645599e 454 PRINTS PR00344 Bacterial sensor protein C-terminal signature 381 395 2.5E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_28935 1dfde2c37c2c1c317d1a234e3645599e 454 PRINTS PR00344 Bacterial sensor protein C-terminal signature 439 452 2.5E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_28935 1dfde2c37c2c1c317d1a234e3645599e 454 SMART SM00388 238 309 2.4E-9 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_41275 9da7a26ba1877a44432f4b56890d6585 135 Pfam PF00293 NUDIX domain 5 121 3.9E-15 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RAM_41275 9da7a26ba1877a44432f4b56890d6585 135 SUPERFAMILY SSF55811 4 128 5.55E-26 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RAM_41275 9da7a26ba1877a44432f4b56890d6585 135 Gene3D G3DSA:3.90.79.10 2 130 8.7E-29 T 13-10-2018 RAM_09550 b8fc54c313a470889ef6e98c57fb91e5 296 Gene3D G3DSA:2.60.120.10 21 125 3.7E-81 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_09550 b8fc54c313a470889ef6e98c57fb91e5 296 TIGRFAM TIGR04378 myo_inos_iolB: 5-deoxy-glucuronate isomerase 19 274 4.3E-85 T 13-10-2018 IPR024203 5-deoxy-glucuronate isomerase, IolB GO:0008880|GO:0019310 KEGG: 00562+5.3.1.30 RAM_09550 b8fc54c313a470889ef6e98c57fb91e5 296 Gene3D G3DSA:2.60.120.10 126 273 3.7E-81 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_09550 b8fc54c313a470889ef6e98c57fb91e5 296 SUPERFAMILY SSF51182 18 257 1.35E-56 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RAM_09550 b8fc54c313a470889ef6e98c57fb91e5 296 PIRSF PIRSF036628 1 279 2.7E-84 T 13-10-2018 IPR024203 5-deoxy-glucuronate isomerase, IolB GO:0008880|GO:0019310 KEGG: 00562+5.3.1.30 RAM_09550 b8fc54c313a470889ef6e98c57fb91e5 296 Pfam PF04962 KduI/IolB family 18 273 7.5E-83 T 13-10-2018 IPR021120 KduI/IolB isomerase GO:0016861 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 RAM_15760 d5412a366973e68c7171125ed8ad36c1 671 SUPERFAMILY SSF56801 175 669 3.14E-123 T 13-10-2018 RAM_15760 d5412a366973e68c7171125ed8ad36c1 671 Gene3D G3DSA:3.30.300.310 571 671 4.5E-32 T 13-10-2018 RAM_15760 d5412a366973e68c7171125ed8ad36c1 671 Pfam PF00501 AMP-binding enzyme 182 575 2.5E-63 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_15760 d5412a366973e68c7171125ed8ad36c1 671 ProSitePatterns PS00455 Putative AMP-binding domain signature. 332 343 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_15760 d5412a366973e68c7171125ed8ad36c1 671 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 8 97 3.9E-6 T 13-10-2018 IPR019587 Polyketide cyclase/dehydrase RAM_15760 d5412a366973e68c7171125ed8ad36c1 671 Pfam PF13193 AMP-binding enzyme C-terminal domain 585 659 5.2E-22 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_15760 d5412a366973e68c7171125ed8ad36c1 671 SUPERFAMILY SSF55961 6 102 1.78E-11 T 13-10-2018 RAM_15760 d5412a366973e68c7171125ed8ad36c1 671 Gene3D G3DSA:3.30.530.20 6 129 2.0E-8 T 13-10-2018 IPR023393 START-like domain superfamily RAM_15760 d5412a366973e68c7171125ed8ad36c1 671 Gene3D G3DSA:3.40.50.12780 174 566 7.4E-82 T 13-10-2018 RAM_10015 96b26d51bb0e250cbf139f7b8d769b15 271 Gene3D G3DSA:3.30.479.20 159 269 3.8E-37 T 13-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 RAM_10015 96b26d51bb0e250cbf139f7b8d769b15 271 Gene3D G3DSA:1.10.8.10 1 56 2.2E-24 T 13-10-2018 RAM_10015 96b26d51bb0e250cbf139f7b8d769b15 271 Hamap MF_00050 Elongation factor Ts [tsf]. 1 271 65.603 T 13-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 RAM_10015 96b26d51bb0e250cbf139f7b8d769b15 271 Gene3D G3DSA:3.30.479.20 57 143 1.8E-18 T 13-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 RAM_10015 96b26d51bb0e250cbf139f7b8d769b15 271 Pfam PF00889 Elongation factor TS 67 270 2.4E-61 T 13-10-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0006414 Reactome: R-HSA-5389840 RAM_10015 96b26d51bb0e250cbf139f7b8d769b15 271 SUPERFAMILY SSF54713 57 269 1.88E-38 T 13-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 RAM_10015 96b26d51bb0e250cbf139f7b8d769b15 271 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 270 2.6E-75 T 13-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 RAM_10015 96b26d51bb0e250cbf139f7b8d769b15 271 ProSitePatterns PS01126 Elongation factor Ts signature 1. 12 27 - T 13-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 RAM_10015 96b26d51bb0e250cbf139f7b8d769b15 271 SUPERFAMILY SSF46934 3 56 1.05E-16 T 13-10-2018 IPR009060 UBA-like superfamily GO:0005515 RAM_10015 96b26d51bb0e250cbf139f7b8d769b15 271 Gene3D G3DSA:1.10.286.20 189 235 3.8E-37 T 13-10-2018 RAM_15515 c9d9ba12384943f832a1b806b0b8c71c 351 SUPERFAMILY SSF81606 168 310 7.19E-11 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_15515 c9d9ba12384943f832a1b806b0b8c71c 351 Gene3D G3DSA:3.60.40.10 164 345 2.0E-30 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_15515 c9d9ba12384943f832a1b806b0b8c71c 351 SMART SM00331 163 347 9.1E-4 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_15515 c9d9ba12384943f832a1b806b0b8c71c 351 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 194 309 3.1E-7 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_15515 c9d9ba12384943f832a1b806b0b8c71c 351 SUPERFAMILY SSF55874 25 154 5.21E-6 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_15515 c9d9ba12384943f832a1b806b0b8c71c 351 Gene3D G3DSA:3.30.565.10 9 156 1.1E-8 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_45725 0841ef7d649f06cd86d201c562a7b3ce 218 Gene3D G3DSA:3.40.630.40 2 218 2.4E-61 T 13-10-2018 RAM_45725 0841ef7d649f06cd86d201c562a7b3ce 218 SUPERFAMILY SSF53187 4 216 5.02E-37 T 13-10-2018 RAM_45725 0841ef7d649f06cd86d201c562a7b3ce 218 SMART SM00646 91 213 9.8E-25 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 RAM_45725 0841ef7d649f06cd86d201c562a7b3ce 218 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 7 213 1.4E-38 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 RAM_28325 09eaa8830b57d081e182e62a609bc01f 253 Gene3D G3DSA:3.30.450.40 73 245 7.9E-49 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_28325 09eaa8830b57d081e182e62a609bc01f 253 Gene3D G3DSA:1.10.10.10 1 68 2.9E-14 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_28325 09eaa8830b57d081e182e62a609bc01f 253 SUPERFAMILY SSF46785 4 67 6.83E-11 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_28325 09eaa8830b57d081e182e62a609bc01f 253 Pfam PF01614 Bacterial transcriptional regulator 123 238 7.4E-27 T 13-10-2018 IPR014757 Transcription regulator IclR, C-terminal RAM_28325 09eaa8830b57d081e182e62a609bc01f 253 SUPERFAMILY SSF55781 57 244 1.77E-45 T 13-10-2018 RAM_28325 09eaa8830b57d081e182e62a609bc01f 253 Pfam PF09339 IclR helix-turn-helix domain 9 52 3.1E-10 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RAM_28325 09eaa8830b57d081e182e62a609bc01f 253 SMART SM00346 1 89 2.3E-9 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RAM_08830 c0d007e576be5292fa1fcd8963dfee79 473 SUPERFAMILY SSF55874 307 471 1.44E-40 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_08830 c0d007e576be5292fa1fcd8963dfee79 473 PRINTS PR00344 Bacterial sensor protein C-terminal signature 434 452 2.0E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_08830 c0d007e576be5292fa1fcd8963dfee79 473 PRINTS PR00344 Bacterial sensor protein C-terminal signature 457 470 2.0E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_08830 c0d007e576be5292fa1fcd8963dfee79 473 PRINTS PR00344 Bacterial sensor protein C-terminal signature 399 413 2.0E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_08830 c0d007e576be5292fa1fcd8963dfee79 473 PRINTS PR00344 Bacterial sensor protein C-terminal signature 417 427 2.0E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_08830 c0d007e576be5292fa1fcd8963dfee79 473 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 363 472 1.3E-25 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_08830 c0d007e576be5292fa1fcd8963dfee79 473 SUPERFAMILY SSF47384 240 317 1.35E-18 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RAM_08830 c0d007e576be5292fa1fcd8963dfee79 473 SMART SM00388 251 318 2.9E-19 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_08830 c0d007e576be5292fa1fcd8963dfee79 473 SMART SM00304 184 243 2.5E-6 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_08830 c0d007e576be5292fa1fcd8963dfee79 473 Pfam PF00512 His Kinase A (phospho-acceptor) domain 252 317 1.1E-17 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_08830 c0d007e576be5292fa1fcd8963dfee79 473 SMART SM00387 362 473 9.5E-42 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_08830 c0d007e576be5292fa1fcd8963dfee79 473 Gene3D G3DSA:1.10.287.130 188 320 6.8E-26 T 13-10-2018 RAM_08830 c0d007e576be5292fa1fcd8963dfee79 473 Gene3D G3DSA:3.30.565.10 351 473 4.2E-39 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_10240 985a5d361cb3225149fe089dcc0defbb 116 SUPERFAMILY SSF54909 24 111 4.56E-22 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_10240 985a5d361cb3225149fe089dcc0defbb 116 Pfam PF03795 YCII-related domain 21 110 7.4E-16 T 13-10-2018 IPR005545 YCII-related RAM_10240 985a5d361cb3225149fe089dcc0defbb 116 Gene3D G3DSA:3.30.70.1060 1 116 2.3E-28 T 13-10-2018 RAM_15870 dbaf28205aa08118a9b9fd21e236b5f2 126 Pfam PF13466 STAS domain 24 102 1.0E-9 T 13-10-2018 IPR002645 STAS domain RAM_15870 dbaf28205aa08118a9b9fd21e236b5f2 126 Gene3D G3DSA:3.30.750.24 5 125 3.1E-26 T 13-10-2018 IPR036513 STAS domain superfamily RAM_15870 dbaf28205aa08118a9b9fd21e236b5f2 126 SUPERFAMILY SSF52091 9 120 1.9E-16 T 13-10-2018 IPR036513 STAS domain superfamily RAM_15870 dbaf28205aa08118a9b9fd21e236b5f2 126 TIGRFAM TIGR00377 ant_ant_sig: anti-anti-sigma factor 9 112 5.4E-16 T 13-10-2018 IPR003658 Anti-sigma factor antagonist GO:0006355|GO:0045152 RAM_13885 e545a9b297e5f4165ebf6508bb384251 161 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 27 59 - T 13-10-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_13885 e545a9b297e5f4165ebf6508bb384251 161 Pfam PF04542 Sigma-70 region 2 5 72 3.9E-16 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_13885 e545a9b297e5f4165ebf6508bb384251 161 Pfam PF04545 Sigma-70, region 4 103 151 4.1E-15 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 RAM_13885 e545a9b297e5f4165ebf6508bb384251 161 SUPERFAMILY SSF88946 2 88 2.43E-17 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_13885 e545a9b297e5f4165ebf6508bb384251 161 Gene3D G3DSA:1.10.1740.10 1 69 8.3E-16 T 13-10-2018 RAM_13885 e545a9b297e5f4165ebf6508bb384251 161 Gene3D G3DSA:1.10.10.10 89 161 2.0E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_13885 e545a9b297e5f4165ebf6508bb384251 161 SUPERFAMILY SSF88659 95 155 2.4E-15 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_13885 e545a9b297e5f4165ebf6508bb384251 161 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 2 152 7.7E-23 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_40560 d8aa3add5114b4e62fdb3dd56e848d09 723 SUPERFAMILY SSF51735 320 502 1.08E-56 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_40560 d8aa3add5114b4e62fdb3dd56e848d09 723 SUPERFAMILY SSF48179 503 645 1.02E-17 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RAM_40560 d8aa3add5114b4e62fdb3dd56e848d09 723 Gene3D G3DSA:3.90.226.10 1 320 1.8E-113 T 13-10-2018 RAM_40560 d8aa3add5114b4e62fdb3dd56e848d09 723 Gene3D G3DSA:1.10.1040.50 505 714 5.7E-65 T 13-10-2018 RAM_40560 d8aa3add5114b4e62fdb3dd56e848d09 723 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 323 501 6.0E-60 T 13-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RAM_40560 d8aa3add5114b4e62fdb3dd56e848d09 723 Gene3D G3DSA:3.40.50.720 321 504 1.7E-67 T 13-10-2018 RAM_40560 d8aa3add5114b4e62fdb3dd56e848d09 723 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 504 604 1.1E-18 T 13-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RAM_40560 d8aa3add5114b4e62fdb3dd56e848d09 723 SUPERFAMILY SSF52096 2 303 1.99E-60 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_40560 d8aa3add5114b4e62fdb3dd56e848d09 723 Pfam PF00378 Enoyl-CoA hydratase/isomerase 13 206 2.4E-32 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RAM_40560 d8aa3add5114b4e62fdb3dd56e848d09 723 SUPERFAMILY SSF48179 631 720 5.61E-16 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RAM_11120 939a40de1dea2b3a9ff9cd8085a4eae1 249 Pfam PF07702 UTRA domain 108 237 7.1E-17 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RAM_11120 939a40de1dea2b3a9ff9cd8085a4eae1 249 SMART SM00345 14 73 4.6E-11 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_11120 939a40de1dea2b3a9ff9cd8085a4eae1 249 SUPERFAMILY SSF46785 4 88 5.2E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_11120 939a40de1dea2b3a9ff9cd8085a4eae1 249 SUPERFAMILY SSF64288 61 241 3.66E-23 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RAM_11120 939a40de1dea2b3a9ff9cd8085a4eae1 249 SMART SM00866 106 239 3.0E-10 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RAM_11120 939a40de1dea2b3a9ff9cd8085a4eae1 249 Gene3D G3DSA:3.40.1410.10 75 241 6.4E-26 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RAM_11120 939a40de1dea2b3a9ff9cd8085a4eae1 249 Gene3D G3DSA:1.10.10.10 3 74 7.9E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_11120 939a40de1dea2b3a9ff9cd8085a4eae1 249 Pfam PF00392 Bacterial regulatory proteins, gntR family 10 73 3.7E-13 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_14515 938653f69cb4130a1301428fdd2545b3 115 SMART SM00418 2 84 6.0E-19 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_14515 938653f69cb4130a1301428fdd2545b3 115 SUPERFAMILY SSF46785 3 101 2.35E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_14515 938653f69cb4130a1301428fdd2545b3 115 Gene3D G3DSA:1.10.10.10 1 109 8.8E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_14515 938653f69cb4130a1301428fdd2545b3 115 Pfam PF12840 Helix-turn-helix domain 4 61 3.6E-12 T 13-10-2018 RAM_14515 938653f69cb4130a1301428fdd2545b3 115 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 55 70 4.1E-11 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_14515 938653f69cb4130a1301428fdd2545b3 115 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 40 55 4.1E-11 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_14515 938653f69cb4130a1301428fdd2545b3 115 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 4 19 4.1E-11 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_02810 c4bdf824a201e1dcafc05dda62fb620b 393 SUPERFAMILY SSF53756 19 391 6.73E-55 T 13-10-2018 RAM_02810 c4bdf824a201e1dcafc05dda62fb620b 393 Pfam PF13579 Glycosyl transferase 4-like domain 18 185 5.7E-17 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 RAM_02810 c4bdf824a201e1dcafc05dda62fb620b 393 Gene3D G3DSA:3.40.50.2000 20 387 1.2E-49 T 13-10-2018 RAM_02810 c4bdf824a201e1dcafc05dda62fb620b 393 Pfam PF13692 Glycosyl transferases group 1 211 355 1.6E-22 T 13-10-2018 RAM_02810 c4bdf824a201e1dcafc05dda62fb620b 393 Gene3D G3DSA:3.40.50.2000 189 370 1.2E-49 T 13-10-2018 RAM_32830 08e5daecebf65fa793bd701d3ff0249c 185 Pfam PF03029 Conserved hypothetical ATP binding protein 10 177 3.6E-27 T 13-10-2018 IPR004130 GPN-loop GTPase RAM_32830 08e5daecebf65fa793bd701d3ff0249c 185 SUPERFAMILY SSF52540 5 176 1.15E-21 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_32830 08e5daecebf65fa793bd701d3ff0249c 185 Gene3D G3DSA:3.40.50.300 4 183 1.7E-16 T 13-10-2018 RAM_36310 bc9016f655df1bb5ecc7288d68e38de9 301 Gene3D G3DSA:1.10.340.30 123 242 6.3E-28 T 13-10-2018 RAM_36310 bc9016f655df1bb5ecc7288d68e38de9 301 SUPERFAMILY SSF48150 115 289 1.92E-29 T 13-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 RAM_36310 bc9016f655df1bb5ecc7288d68e38de9 301 Gene3D G3DSA:1.10.1670.40 103 288 6.3E-28 T 13-10-2018 RAM_19055 8183a3505a9cca49dcc2c2f85d0713ed 329 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 121 326 9.6E-35 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_19055 8183a3505a9cca49dcc2c2f85d0713ed 329 SUPERFAMILY SSF161098 97 309 8.72E-13 T 13-10-2018 IPR035906 MetI-like superfamily RAM_19055 8183a3505a9cca49dcc2c2f85d0713ed 329 Gene3D G3DSA:1.10.3720.10 93 320 1.3E-16 T 13-10-2018 IPR035906 MetI-like superfamily RAM_02965 13310954067150ec34538da7c2215a00 163 Pfam PF04461 Protein of unknown function (DUF520) 4 163 1.2E-59 T 13-10-2018 IPR007551 Protein of unknown function DUF520 RAM_02965 13310954067150ec34538da7c2215a00 163 SUPERFAMILY SSF89963 4 88 7.06E-25 T 13-10-2018 IPR036183 YajQ-like superfamily RAM_02965 13310954067150ec34538da7c2215a00 163 Hamap MF_00632 UPF0234 protein YajQ [yajQ]. 3 163 24.692 T 13-10-2018 IPR007551 Protein of unknown function DUF520 RAM_02965 13310954067150ec34538da7c2215a00 163 Gene3D G3DSA:3.30.70.990 11 100 3.7E-59 T 13-10-2018 IPR035570 UPF0234, N-terminal RAM_02965 13310954067150ec34538da7c2215a00 163 Gene3D G3DSA:3.30.70.860 5 163 3.7E-59 T 13-10-2018 IPR035571 UPF0234-like, C-terminal RAM_02965 13310954067150ec34538da7c2215a00 163 SUPERFAMILY SSF89963 92 163 4.45E-24 T 13-10-2018 IPR036183 YajQ-like superfamily RAM_00720 63acfa0b44df60b8ea7682ee5adc1178 280 Gene3D G3DSA:3.40.50.10320 2 280 7.5E-83 T 13-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 RAM_00720 63acfa0b44df60b8ea7682ee5adc1178 280 Pfam PF02585 GlcNAc-PI de-N-acetylase 7 150 2.4E-27 T 13-10-2018 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related Reactome: R-HSA-162710 RAM_00720 63acfa0b44df60b8ea7682ee5adc1178 280 SUPERFAMILY SSF102588 3 270 1.44E-72 T 13-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 RAM_00720 63acfa0b44df60b8ea7682ee5adc1178 280 Hamap MF_01482 Mycothiol S-conjugate amidase [mca]. 6 279 47.918 T 13-10-2018 IPR017811 Mycothiol S-conjugate amidase Mca GO:0010126 RAM_00720 63acfa0b44df60b8ea7682ee5adc1178 280 TIGRFAM TIGR03446 mycothiol_Mca: mycothiol conjugate amidase Mca 3 278 5.4E-115 T 13-10-2018 IPR017811 Mycothiol S-conjugate amidase Mca GO:0010126 RAM_13425 e2e57760ce9fc8bfe7aee7b638d352a7 186 Pfam PF00196 Bacterial regulatory proteins, luxR family 125 179 6.2E-19 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_13425 e2e57760ce9fc8bfe7aee7b638d352a7 186 SMART SM00421 122 179 2.4E-24 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_13425 e2e57760ce9fc8bfe7aee7b638d352a7 186 SUPERFAMILY SSF46894 118 185 2.82E-20 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_13425 e2e57760ce9fc8bfe7aee7b638d352a7 186 SUPERFAMILY SSF52172 5 102 1.31E-17 T 13-10-2018 IPR011006 CheY-like superfamily RAM_13425 e2e57760ce9fc8bfe7aee7b638d352a7 186 ProSitePatterns PS00622 LuxR-type HTH domain signature. 139 166 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_13425 e2e57760ce9fc8bfe7aee7b638d352a7 186 Gene3D G3DSA:3.40.50.12740 2 185 5.8E-44 T 13-10-2018 RAM_13425 e2e57760ce9fc8bfe7aee7b638d352a7 186 SMART SM00448 1 91 0.0032 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_13425 e2e57760ce9fc8bfe7aee7b638d352a7 186 Pfam PF00072 Response regulator receiver domain 5 84 1.5E-11 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_13425 e2e57760ce9fc8bfe7aee7b638d352a7 186 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 125 139 3.9E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_13425 e2e57760ce9fc8bfe7aee7b638d352a7 186 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 139 155 3.9E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_13425 e2e57760ce9fc8bfe7aee7b638d352a7 186 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 155 167 3.9E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_05870 86efb8fda9148edee469a554f7f0580e 296 Gene3D G3DSA:1.10.3720.10 19 287 6.5E-64 T 13-10-2018 IPR035906 MetI-like superfamily RAM_05870 86efb8fda9148edee469a554f7f0580e 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 109 289 4.7E-19 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_05870 86efb8fda9148edee469a554f7f0580e 296 SUPERFAMILY SSF161098 26 296 7.01E-72 T 13-10-2018 IPR035906 MetI-like superfamily RAM_03300 b85ae643e717f6fb9656654f1daa7a6b 501 Pfam PF01494 FAD binding domain 3 341 1.1E-60 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_03300 b85ae643e717f6fb9656654f1daa7a6b 501 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 329 345 8.2E-33 T 13-10-2018 RAM_03300 b85ae643e717f6fb9656654f1daa7a6b 501 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 155 170 8.2E-33 T 13-10-2018 RAM_03300 b85ae643e717f6fb9656654f1daa7a6b 501 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 278 293 8.2E-33 T 13-10-2018 RAM_03300 b85ae643e717f6fb9656654f1daa7a6b 501 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 311 329 8.2E-33 T 13-10-2018 RAM_03300 b85ae643e717f6fb9656654f1daa7a6b 501 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 8.2E-33 T 13-10-2018 RAM_03300 b85ae643e717f6fb9656654f1daa7a6b 501 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 293 309 8.2E-33 T 13-10-2018 RAM_03300 b85ae643e717f6fb9656654f1daa7a6b 501 SUPERFAMILY SSF51905 3 366 8.03E-67 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_03300 b85ae643e717f6fb9656654f1daa7a6b 501 Gene3D G3DSA:3.50.50.60 6 341 6.2E-88 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_03300 b85ae643e717f6fb9656654f1daa7a6b 501 Gene3D G3DSA:3.30.70.2450 184 267 6.2E-88 T 13-10-2018 RAM_38915 01cf72a6b15d72db1e4f1e22875d2a98 862 Gene3D G3DSA:2.60.120.430 675 862 2.3E-9 T 13-10-2018 RAM_38915 01cf72a6b15d72db1e4f1e22875d2a98 862 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 437 647 7.1E-28 T 13-10-2018 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 RAM_38915 01cf72a6b15d72db1e4f1e22875d2a98 862 PRINTS PR00133 Glycosyl hydrolase family 3 signature 159 178 1.5E-21 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_38915 01cf72a6b15d72db1e4f1e22875d2a98 862 PRINTS PR00133 Glycosyl hydrolase family 3 signature 244 260 1.5E-21 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_38915 01cf72a6b15d72db1e4f1e22875d2a98 862 PRINTS PR00133 Glycosyl hydrolase family 3 signature 135 151 1.5E-21 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_38915 01cf72a6b15d72db1e4f1e22875d2a98 862 PRINTS PR00133 Glycosyl hydrolase family 3 signature 321 339 1.5E-21 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_38915 01cf72a6b15d72db1e4f1e22875d2a98 862 PRINTS PR00133 Glycosyl hydrolase family 3 signature 205 221 1.5E-21 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_38915 01cf72a6b15d72db1e4f1e22875d2a98 862 Gene3D G3DSA:3.40.50.1700 423 650 6.5E-62 T 13-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 RAM_38915 01cf72a6b15d72db1e4f1e22875d2a98 862 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 72 398 1.2E-74 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_38915 01cf72a6b15d72db1e4f1e22875d2a98 862 Gene3D G3DSA:3.20.20.300 60 422 1.9E-121 T 13-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 RAM_38915 01cf72a6b15d72db1e4f1e22875d2a98 862 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 321 338 - T 13-10-2018 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 RAM_38915 01cf72a6b15d72db1e4f1e22875d2a98 862 SUPERFAMILY SSF52279 437 646 1.02E-39 T 13-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 RAM_38915 01cf72a6b15d72db1e4f1e22875d2a98 862 SUPERFAMILY SSF51445 57 435 2.42E-100 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_32185 2c168a606d186578ab3a29285f4ddda0 348 SUPERFAMILY SSF51556 13 339 9.61E-71 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_32185 2c168a606d186578ab3a29285f4ddda0 348 Pfam PF00962 Adenosine/AMP deaminase 17 332 3.5E-72 T 13-10-2018 IPR001365 Adenosine/AMP deaminase domain GO:0019239 Reactome: R-HSA-74217 RAM_32185 2c168a606d186578ab3a29285f4ddda0 348 Gene3D G3DSA:3.20.20.140 3 344 4.9E-93 T 13-10-2018 RAM_32185 2c168a606d186578ab3a29285f4ddda0 348 TIGRFAM TIGR01430 aden_deam: adenosine deaminase 17 333 2.8E-77 T 13-10-2018 IPR006330 Adenosine/adenine deaminase GO:0019239 Reactome: R-HSA-74217 RAM_05270 a2268221809b1d0ca5fe25b1db2341b9 534 Pfam PF04389 Peptidase family M28 101 305 1.2E-43 T 13-10-2018 IPR007484 Peptidase M28 RAM_05270 a2268221809b1d0ca5fe25b1db2341b9 534 Gene3D G3DSA:2.60.120.260 421 534 6.3E-10 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_05270 a2268221809b1d0ca5fe25b1db2341b9 534 SUPERFAMILY SSF53187 46 311 1.07E-63 T 13-10-2018 RAM_05270 a2268221809b1d0ca5fe25b1db2341b9 534 SUPERFAMILY SSF49785 431 534 8.22E-21 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_05270 a2268221809b1d0ca5fe25b1db2341b9 534 Pfam PF01483 Proprotein convertase P-domain 456 533 1.2E-18 T 13-10-2018 IPR002884 P domain GO:0004252|GO:0006508 RAM_05270 a2268221809b1d0ca5fe25b1db2341b9 534 Gene3D G3DSA:3.40.630.10 36 314 3.0E-79 T 13-10-2018 RAM_43145 296bec9a3a26b1f3cb3619fbd682316d 228 SUPERFAMILY SSF56214 105 216 1.96E-22 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 RAM_43145 296bec9a3a26b1f3cb3619fbd682316d 228 SUPERFAMILY SSF56214 6 98 7.5E-14 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 RAM_43145 296bec9a3a26b1f3cb3619fbd682316d 228 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 106 210 2.3E-14 T 13-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 RAM_43145 296bec9a3a26b1f3cb3619fbd682316d 228 Gene3D G3DSA:3.90.470.20 107 213 6.5E-35 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 RAM_43145 296bec9a3a26b1f3cb3619fbd682316d 228 Gene3D G3DSA:3.90.470.20 15 214 6.5E-35 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 RAM_40220 14c7331385da2f8ddec753d3386d43b1 722 SUPERFAMILY SSF49384 622 717 3.0E-20 T 13-10-2018 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily GO:0030246 RAM_40220 14c7331385da2f8ddec753d3386d43b1 722 Gene3D G3DSA:2.60.40.1180 26 526 1.0E-186 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta RAM_40220 14c7331385da2f8ddec753d3386d43b1 722 SMART SM00060 535 605 9.9E-11 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 RAM_40220 14c7331385da2f8ddec753d3386d43b1 722 Pfam PF12891 Glycoside hydrolase family 44 77 312 3.0E-80 T 13-10-2018 IPR024745 Glycoside hydrolase, family 44 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 RAM_40220 14c7331385da2f8ddec753d3386d43b1 722 SUPERFAMILY SSF51445 42 409 3.67E-22 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_40220 14c7331385da2f8ddec753d3386d43b1 722 Gene3D G3DSA:3.20.20.80 37 430 1.0E-186 T 13-10-2018 RAM_40220 14c7331385da2f8ddec753d3386d43b1 722 Gene3D G3DSA:2.60.40.10 536 616 2.4E-18 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_40220 14c7331385da2f8ddec753d3386d43b1 722 Pfam PF00041 Fibronectin type III domain 536 609 2.3E-6 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 RAM_40220 14c7331385da2f8ddec753d3386d43b1 722 Pfam PF00553 Cellulose binding domain 625 718 7.9E-16 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_40220 14c7331385da2f8ddec753d3386d43b1 722 Gene3D G3DSA:2.60.40.290 622 722 2.6E-20 T 13-10-2018 IPR012291 CBM2, carbohydrate-binding domain superfamily GO:0004553|GO:0030247 RAM_40220 14c7331385da2f8ddec753d3386d43b1 722 SUPERFAMILY SSF49265 530 621 1.2E-15 T 13-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 RAM_40220 14c7331385da2f8ddec753d3386d43b1 722 SMART SM00637 625 719 9.3E-12 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_20200 0ded6abddb9396bef2950a0e0df7b3f5 1275 Gene3D G3DSA:3.30.559.10 4 389 1.8E-132 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_20200 0ded6abddb9396bef2950a0e0df7b3f5 1275 SMART SM00823 Phosphopantetheine attachment site 968 1037 3.2E-4 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_20200 0ded6abddb9396bef2950a0e0df7b3f5 1275 Pfam PF00975 Thioesterase domain 1055 1270 1.5E-24 T 13-10-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 RAM_20200 0ded6abddb9396bef2950a0e0df7b3f5 1275 Gene3D G3DSA:1.10.1200.10 958 1038 1.1E-20 T 13-10-2018 IPR036736 ACP-like superfamily RAM_20200 0ded6abddb9396bef2950a0e0df7b3f5 1275 Pfam PF00550 Phosphopantetheine attachment site 971 1033 1.3E-10 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_20200 0ded6abddb9396bef2950a0e0df7b3f5 1275 Gene3D G3DSA:3.40.50.1820 1043 1275 4.2E-46 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_20200 0ded6abddb9396bef2950a0e0df7b3f5 1275 SUPERFAMILY SSF52777 203 446 8.89E-59 T 13-10-2018 RAM_20200 0ded6abddb9396bef2950a0e0df7b3f5 1275 Pfam PF00501 AMP-binding enzyme 483 862 1.7E-87 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_20200 0ded6abddb9396bef2950a0e0df7b3f5 1275 SUPERFAMILY SSF52777 5 194 6.0E-44 T 13-10-2018 RAM_20200 0ded6abddb9396bef2950a0e0df7b3f5 1275 SMART SM00824 Thioesterase 1057 1272 4.7E-7 T 13-10-2018 IPR020802 Polyketide synthase, thioesterase domain GO:0009058|GO:0016788 RAM_20200 0ded6abddb9396bef2950a0e0df7b3f5 1275 Gene3D G3DSA:3.30.300.30 857 955 1.6E-26 T 13-10-2018 RAM_20200 0ded6abddb9396bef2950a0e0df7b3f5 1275 ProSitePatterns PS00455 Putative AMP-binding domain signature. 607 618 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_20200 0ded6abddb9396bef2950a0e0df7b3f5 1275 SUPERFAMILY SSF53474 1034 1272 3.24E-43 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_20200 0ded6abddb9396bef2950a0e0df7b3f5 1275 Pfam PF13193 AMP-binding enzyme C-terminal domain 870 940 5.5E-7 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_20200 0ded6abddb9396bef2950a0e0df7b3f5 1275 SUPERFAMILY SSF47336 961 1033 5.76E-16 T 13-10-2018 IPR036736 ACP-like superfamily RAM_20200 0ded6abddb9396bef2950a0e0df7b3f5 1275 SUPERFAMILY SSF56801 442 979 3.14E-142 T 13-10-2018 RAM_20200 0ded6abddb9396bef2950a0e0df7b3f5 1275 Gene3D G3DSA:3.30.559.30 198 448 1.8E-132 T 13-10-2018 RAM_20200 0ded6abddb9396bef2950a0e0df7b3f5 1275 Gene3D G3DSA:3.40.50.12780 474 856 2.4E-127 T 13-10-2018 RAM_20200 0ded6abddb9396bef2950a0e0df7b3f5 1275 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 504 886 8.8E-119 T 13-10-2018 IPR010071 Amino acid adenylation domain RAM_20200 0ded6abddb9396bef2950a0e0df7b3f5 1275 Pfam PF00668 Condensation domain 134 463 1.3E-74 T 13-10-2018 IPR001242 Condensation domain RAM_20200 0ded6abddb9396bef2950a0e0df7b3f5 1275 Pfam PF00668 Condensation domain 3 116 8.6E-20 T 13-10-2018 IPR001242 Condensation domain RAM_20200 0ded6abddb9396bef2950a0e0df7b3f5 1275 PIRSF PIRSF001617 602 708 1.8E-7 T 13-10-2018 RAM_20200 0ded6abddb9396bef2950a0e0df7b3f5 1275 PIRSF PIRSF001617 904 1037 1.5E-11 T 13-10-2018 RAM_20200 0ded6abddb9396bef2950a0e0df7b3f5 1275 PIRSF PIRSF001617 787 906 3.8E-19 T 13-10-2018 RAM_20200 0ded6abddb9396bef2950a0e0df7b3f5 1275 PIRSF PIRSF001617 203 592 2.9E-16 T 13-10-2018 RAM_33970 82c50343c39eff71445b8a51fae5de7c 303 Gene3D G3DSA:3.30.300.20 190 303 1.5E-39 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta RAM_33970 82c50343c39eff71445b8a51fae5de7c 303 Hamap MF_00367 GTPase Era [era]. 4 303 34.527 T 13-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_33970 82c50343c39eff71445b8a51fae5de7c 303 SUPERFAMILY SSF54814 188 303 2.94E-34 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 RAM_33970 82c50343c39eff71445b8a51fae5de7c 303 SUPERFAMILY SSF52540 10 222 5.55E-39 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_33970 82c50343c39eff71445b8a51fae5de7c 303 Pfam PF07650 KH domain 213 292 5.2E-18 T 13-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_33970 82c50343c39eff71445b8a51fae5de7c 303 Pfam PF01926 50S ribosome-binding GTPase 9 112 4.0E-20 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 RAM_33970 82c50343c39eff71445b8a51fae5de7c 303 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 11 173 1.6E-18 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 RAM_33970 82c50343c39eff71445b8a51fae5de7c 303 TIGRFAM TIGR00436 era: GTP-binding protein Era 7 286 9.9E-69 T 13-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_33970 82c50343c39eff71445b8a51fae5de7c 303 Gene3D G3DSA:3.40.50.300 2 188 2.9E-41 T 13-10-2018 RAM_10000 580dc5b9b29567798c23d92fd1ebe8f4 282 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 50 276 7.4E-36 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_10000 580dc5b9b29567798c23d92fd1ebe8f4 282 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 81 94 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RAM_10000 580dc5b9b29567798c23d92fd1ebe8f4 282 Gene3D G3DSA:1.10.1740.10 40 123 1.8E-30 T 13-10-2018 RAM_10000 580dc5b9b29567798c23d92fd1ebe8f4 282 PRINTS PR00046 Major sigma-70 factor signature 81 94 1.8E-13 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RAM_10000 580dc5b9b29567798c23d92fd1ebe8f4 282 PRINTS PR00046 Major sigma-70 factor signature 246 261 1.8E-13 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RAM_10000 580dc5b9b29567798c23d92fd1ebe8f4 282 PRINTS PR00046 Major sigma-70 factor signature 229 241 1.8E-13 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RAM_10000 580dc5b9b29567798c23d92fd1ebe8f4 282 PRINTS PR00046 Major sigma-70 factor signature 261 272 1.8E-13 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RAM_10000 580dc5b9b29567798c23d92fd1ebe8f4 282 Gene3D G3DSA:1.20.140.160 125 279 4.7E-46 T 13-10-2018 RAM_10000 580dc5b9b29567798c23d92fd1ebe8f4 282 SUPERFAMILY SSF88659 127 204 4.36E-14 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_10000 580dc5b9b29567798c23d92fd1ebe8f4 282 PIRSF PIRSF000770 31 281 4.4E-61 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RAM_10000 580dc5b9b29567798c23d92fd1ebe8f4 282 TIGRFAM TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family 54 276 7.7E-84 T 13-10-2018 IPR012845 RNA polymerase sigma factor, FliA/WhiG GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 RAM_10000 580dc5b9b29567798c23d92fd1ebe8f4 282 SUPERFAMILY SSF88946 31 126 2.49E-28 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_10000 580dc5b9b29567798c23d92fd1ebe8f4 282 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 246 272 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RAM_10000 580dc5b9b29567798c23d92fd1ebe8f4 282 Pfam PF04542 Sigma-70 region 2 54 126 4.9E-18 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_10000 580dc5b9b29567798c23d92fd1ebe8f4 282 SUPERFAMILY SSF88659 192 278 5.42E-23 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_10000 580dc5b9b29567798c23d92fd1ebe8f4 282 Pfam PF04545 Sigma-70, region 4 225 274 4.9E-18 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 RAM_10000 580dc5b9b29567798c23d92fd1ebe8f4 282 Pfam PF04539 Sigma-70 region 3 136 210 8.7E-8 T 13-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 RAM_23340 daa3cb1ebcee53d13b6bc30720d31519 156 SUPERFAMILY SSF47741 85 152 1.06E-31 T 13-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily RAM_23340 daa3cb1ebcee53d13b6bc30720d31519 156 SUPERFAMILY SSF54292 3 88 2.1E-20 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RAM_23340 daa3cb1ebcee53d13b6bc30720d31519 156 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 40 48 - T 13-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RAM_23340 daa3cb1ebcee53d13b6bc30720d31519 156 Gene3D G3DSA:3.30.365.10 1 156 3.2E-59 T 13-10-2018 RAM_23340 daa3cb1ebcee53d13b6bc30720d31519 156 Pfam PF01799 [2Fe-2S] binding domain 74 146 2.0E-29 T 13-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RAM_23340 daa3cb1ebcee53d13b6bc30720d31519 156 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 5 54 7.2E-7 T 13-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RAM_07140 9faf2fa1968da3cd0173242cd93c9755 274 Gene3D G3DSA:3.20.20.410 1 253 3.6E-38 T 13-10-2018 IPR036520 UPF0759 superfamily RAM_07140 9faf2fa1968da3cd0173242cd93c9755 274 Pfam PF01904 Protein of unknown function DUF72 13 249 2.3E-50 T 13-10-2018 IPR002763 Protein of unknown function DUF72 RAM_07140 9faf2fa1968da3cd0173242cd93c9755 274 SUPERFAMILY SSF117396 1 250 5.49E-60 T 13-10-2018 IPR036520 UPF0759 superfamily RAM_35985 49a64e86d597c2bf054ddc50e3213e75 264 Pfam PF02585 GlcNAc-PI de-N-acetylase 7 146 9.5E-25 T 13-10-2018 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related Reactome: R-HSA-162710 RAM_35985 49a64e86d597c2bf054ddc50e3213e75 264 Gene3D G3DSA:3.40.50.10320 1 264 1.1E-68 T 13-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 RAM_35985 49a64e86d597c2bf054ddc50e3213e75 264 SUPERFAMILY SSF102588 3 240 2.09E-52 T 13-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 RAM_40080 866a9a44edf36e7a0e9f838c39f5352b 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 3.8E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_40080 866a9a44edf36e7a0e9f838c39f5352b 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 3.8E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_40080 866a9a44edf36e7a0e9f838c39f5352b 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 3.8E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_40080 866a9a44edf36e7a0e9f838c39f5352b 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 3.8E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_40080 866a9a44edf36e7a0e9f838c39f5352b 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 3.8E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_40080 866a9a44edf36e7a0e9f838c39f5352b 278 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 4.0E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_40080 866a9a44edf36e7a0e9f838c39f5352b 278 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 4.0E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_40080 866a9a44edf36e7a0e9f838c39f5352b 278 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 4.0E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_40080 866a9a44edf36e7a0e9f838c39f5352b 278 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 5 188 0.0059 T 13-10-2018 RAM_40080 866a9a44edf36e7a0e9f838c39f5352b 278 Pfam PF00106 short chain dehydrogenase 6 193 4.4E-47 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_40080 866a9a44edf36e7a0e9f838c39f5352b 278 SUPERFAMILY SSF51735 3 242 3.64E-59 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_40080 866a9a44edf36e7a0e9f838c39f5352b 278 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_40080 866a9a44edf36e7a0e9f838c39f5352b 278 Gene3D G3DSA:3.40.50.720 4 273 5.4E-64 T 13-10-2018 RAM_46420 6139c204d3831383e9dff81d0e23b816 79 Hamap MF_01926 Phosphoribosylformylglycinamidine synthase subunit PurS [purS]. 2 76 18.395 T 13-10-2018 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 RAM_46420 6139c204d3831383e9dff81d0e23b816 79 ProDom PD010362 PHOSPHORIBOSYLFORMYLGLYCINAMIDINE PURS SYNTHETASE SYNTHASE COMPONENT SYNTHASE LIGASE FGAM UPF0062 I 11 74 6.0E-13 T 13-10-2018 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 RAM_46420 6139c204d3831383e9dff81d0e23b816 79 TIGRFAM TIGR00302 TIGR00302: phosphoribosylformylglycinamidine synthase, purS protein 4 74 7.2E-11 T 13-10-2018 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 RAM_46420 6139c204d3831383e9dff81d0e23b816 79 Pfam PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase 4 75 2.1E-22 T 13-10-2018 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 RAM_46420 6139c204d3831383e9dff81d0e23b816 79 Gene3D G3DSA:3.30.1280.10 2 79 6.1E-22 T 13-10-2018 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RAM_46420 6139c204d3831383e9dff81d0e23b816 79 SUPERFAMILY SSF82697 3 75 8.55E-21 T 13-10-2018 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RAM_05855 6a34df056a30277c73f81152c6ea7550 399 SUPERFAMILY SSF53067 75 369 1.07E-31 T 13-10-2018 RAM_05855 6a34df056a30277c73f81152c6ea7550 399 Gene3D G3DSA:1.10.10.10 1 69 8.0E-8 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_05855 6a34df056a30277c73f81152c6ea7550 399 SUPERFAMILY SSF46785 2 63 1.36E-7 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_05855 6a34df056a30277c73f81152c6ea7550 399 Gene3D G3DSA:3.30.420.40 71 204 1.0E-27 T 13-10-2018 RAM_05855 6a34df056a30277c73f81152c6ea7550 399 Pfam PF00480 ROK family 77 349 8.9E-25 T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 RAM_05855 6a34df056a30277c73f81152c6ea7550 399 Gene3D G3DSA:3.30.420.40 205 356 1.3E-20 T 13-10-2018 RAM_05125 8b159396f39c880d84326786d397e752 329 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 2 321 3.4E-131 T 13-10-2018 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|KEGG: 00525+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 RAM_05125 8b159396f39c880d84326786d397e752 329 Gene3D G3DSA:3.90.25.10 193 314 1.4E-123 T 13-10-2018 RAM_05125 8b159396f39c880d84326786d397e752 329 Gene3D G3DSA:3.40.50.720 2 306 1.4E-123 T 13-10-2018 RAM_05125 8b159396f39c880d84326786d397e752 329 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 305 7.3E-79 T 13-10-2018 IPR016040 NAD(P)-binding domain RAM_05125 8b159396f39c880d84326786d397e752 329 SUPERFAMILY SSF51735 1 321 8.0E-99 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_03620 90f5522a71f2f6705d46d42a1a32c7db 182 SUPERFAMILY SSF64263 1 118 3.14E-45 T 13-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_03620 90f5522a71f2f6705d46d42a1a32c7db 182 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 25.7 T 13-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_03620 90f5522a71f2f6705d46d42a1a32c7db 182 Gene3D G3DSA:3.90.1030.10 1 116 2.2E-43 T 13-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_03620 90f5522a71f2f6705d46d42a1a32c7db 182 Pfam PF01196 Ribosomal protein L17 21 116 5.6E-36 T 13-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_03620 90f5522a71f2f6705d46d42a1a32c7db 182 ProSitePatterns PS01167 Ribosomal protein L17 signature. 34 56 - T 13-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_03620 90f5522a71f2f6705d46d42a1a32c7db 182 TIGRFAM TIGR00059 L17: ribosomal protein bL17 9 116 1.3E-40 T 13-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_08725 f0f547744ba451ec025d1d024cc00e7d 671 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 334 557 4.7E-60 T 13-10-2018 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 RAM_08725 f0f547744ba451ec025d1d024cc00e7d 671 PRINTS PR00133 Glycosyl hydrolase family 3 signature 164 180 9.6E-28 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_08725 f0f547744ba451ec025d1d024cc00e7d 671 PRINTS PR00133 Glycosyl hydrolase family 3 signature 234 252 9.6E-28 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_08725 f0f547744ba451ec025d1d024cc00e7d 671 PRINTS PR00133 Glycosyl hydrolase family 3 signature 87 106 9.6E-28 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_08725 f0f547744ba451ec025d1d024cc00e7d 671 PRINTS PR00133 Glycosyl hydrolase family 3 signature 58 74 9.6E-28 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_08725 f0f547744ba451ec025d1d024cc00e7d 671 PRINTS PR00133 Glycosyl hydrolase family 3 signature 133 149 9.6E-28 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_08725 f0f547744ba451ec025d1d024cc00e7d 671 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 82 292 5.7E-41 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_08725 f0f547744ba451ec025d1d024cc00e7d 671 Pfam PF14310 Fibronectin type III-like domain 590 659 5.8E-24 T 13-10-2018 IPR026891 Fibronectin type III-like domain RAM_08725 f0f547744ba451ec025d1d024cc00e7d 671 Gene3D G3DSA:3.20.20.300 3 308 3.5E-97 T 13-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 RAM_08725 f0f547744ba451ec025d1d024cc00e7d 671 SMART SM01217 590 659 7.5E-31 T 13-10-2018 IPR026891 Fibronectin type III-like domain RAM_08725 f0f547744ba451ec025d1d024cc00e7d 671 SUPERFAMILY SSF52279 334 560 5.1E-58 T 13-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 RAM_08725 f0f547744ba451ec025d1d024cc00e7d 671 Gene3D G3DSA:3.40.50.1700 319 558 6.1E-76 T 13-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 RAM_08725 f0f547744ba451ec025d1d024cc00e7d 671 SUPERFAMILY SSF51445 12 331 6.0E-88 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_08725 f0f547744ba451ec025d1d024cc00e7d 671 Gene3D G3DSA:2.60.40.10 559 669 1.6E-36 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_03340 fa5190c1dd84df422868ee668e4cf30e 151 Pfam PF01220 Dehydroquinase class II 4 139 9.8E-47 T 13-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RAM_03340 fa5190c1dd84df422868ee668e4cf30e 151 PIRSF PIRSF001399 1 146 4.5E-49 T 13-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RAM_03340 fa5190c1dd84df422868ee668e4cf30e 151 Gene3D G3DSA:3.40.50.9100 2 146 8.2E-52 T 13-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RAM_03340 fa5190c1dd84df422868ee668e4cf30e 151 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 16 148 1.0E-71 T 13-10-2018 RAM_03340 fa5190c1dd84df422868ee668e4cf30e 151 ProSitePatterns PS01029 Dehydroquinase class II signature. 7 24 - T 13-10-2018 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RAM_03340 fa5190c1dd84df422868ee668e4cf30e 151 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 151 53.019 T 13-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RAM_03340 fa5190c1dd84df422868ee668e4cf30e 151 SUPERFAMILY SSF52304 3 144 3.4E-51 T 13-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RAM_21750 aec616cc88fe65a7d6f64213dcfa8a7e 228 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 127 155 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_21750 aec616cc88fe65a7d6f64213dcfa8a7e 228 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 68 79 1.7E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_21750 aec616cc88fe65a7d6f64213dcfa8a7e 228 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 120 128 1.7E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_21750 aec616cc88fe65a7d6f64213dcfa8a7e 228 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 159 1.7E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_21750 aec616cc88fe65a7d6f64213dcfa8a7e 228 SUPERFAMILY SSF51735 6 210 7.38E-50 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_21750 aec616cc88fe65a7d6f64213dcfa8a7e 228 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 5 176 0.0016 T 13-10-2018 RAM_21750 aec616cc88fe65a7d6f64213dcfa8a7e 228 Pfam PF00106 short chain dehydrogenase 7 183 2.2E-38 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_21750 aec616cc88fe65a7d6f64213dcfa8a7e 228 Gene3D G3DSA:3.40.50.720 5 219 1.8E-50 T 13-10-2018 RAM_21750 aec616cc88fe65a7d6f64213dcfa8a7e 228 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 114 130 6.2E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_21750 aec616cc88fe65a7d6f64213dcfa8a7e 228 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 188 208 6.2E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_21750 aec616cc88fe65a7d6f64213dcfa8a7e 228 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 140 159 6.2E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_21750 aec616cc88fe65a7d6f64213dcfa8a7e 228 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 68 79 6.2E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_21750 aec616cc88fe65a7d6f64213dcfa8a7e 228 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 6.2E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_21750 aec616cc88fe65a7d6f64213dcfa8a7e 228 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 177 6.2E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_26215 318ca3564f7b4674bbc29abdec326a07 687 Gene3D G3DSA:1.20.1640.10 171 323 1.7E-14 T 13-10-2018 RAM_26215 318ca3564f7b4674bbc29abdec326a07 687 SUPERFAMILY SSF82866 133 334 7.46E-32 T 13-10-2018 RAM_26215 318ca3564f7b4674bbc29abdec326a07 687 SUPERFAMILY SSF82866 463 679 1.27E-29 T 13-10-2018 RAM_26215 318ca3564f7b4674bbc29abdec326a07 687 Gene3D G3DSA:1.20.1640.10 478 681 3.2E-8 T 13-10-2018 RAM_26215 318ca3564f7b4674bbc29abdec326a07 687 Pfam PF03176 MMPL family 466 682 6.4E-50 T 13-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 RAM_26215 318ca3564f7b4674bbc29abdec326a07 687 Pfam PF03176 MMPL family 47 363 4.1E-56 T 13-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 RAM_26215 318ca3564f7b4674bbc29abdec326a07 687 Gene3D G3DSA:3.30.70.1440 119 169 1.7E-14 T 13-10-2018 RAM_10885 9480ea119458496d0b2d3ae88d8f821c 118 SUPERFAMILY SSF47413 11 76 1.28E-8 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_10885 9480ea119458496d0b2d3ae88d8f821c 118 Gene3D G3DSA:1.10.260.40 14 117 7.4E-6 T 13-10-2018 RAM_30040 c498413bd099cdde4efdc95ed9a27fff 539 SUPERFAMILY SSF52518 2 172 1.11E-36 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_30040 c498413bd099cdde4efdc95ed9a27fff 539 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 186 313 4.0E-20 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 RAM_30040 c498413bd099cdde4efdc95ed9a27fff 539 Gene3D G3DSA:3.40.50.1220 187 345 3.4E-78 T 13-10-2018 RAM_30040 c498413bd099cdde4efdc95ed9a27fff 539 SUPERFAMILY SSF52518 354 528 1.21E-40 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_30040 c498413bd099cdde4efdc95ed9a27fff 539 SUPERFAMILY SSF52467 150 331 2.07E-29 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily RAM_30040 c498413bd099cdde4efdc95ed9a27fff 539 Gene3D G3DSA:3.40.50.970 346 521 3.4E-78 T 13-10-2018 RAM_30040 c498413bd099cdde4efdc95ed9a27fff 539 Gene3D G3DSA:3.40.50.970 1 179 1.4E-38 T 13-10-2018 RAM_30040 c498413bd099cdde4efdc95ed9a27fff 539 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 378 520 6.0E-23 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RAM_30040 c498413bd099cdde4efdc95ed9a27fff 539 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 2 166 1.5E-40 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RAM_24315 57f607df7b1b75d534966bbf66572720 300 SUPERFAMILY SSF53850 88 291 6.7E-39 T 13-10-2018 RAM_24315 57f607df7b1b75d534966bbf66572720 300 Pfam PF03466 LysR substrate binding domain 98 292 1.7E-29 T 13-10-2018 IPR005119 LysR, substrate-binding RAM_24315 57f607df7b1b75d534966bbf66572720 300 Gene3D G3DSA:3.40.190.10 167 266 5.7E-55 T 13-10-2018 RAM_24315 57f607df7b1b75d534966bbf66572720 300 Gene3D G3DSA:3.40.190.10 89 289 5.7E-55 T 13-10-2018 RAM_24315 57f607df7b1b75d534966bbf66572720 300 SUPERFAMILY SSF46785 3 80 1.38E-15 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_24315 57f607df7b1b75d534966bbf66572720 300 Gene3D G3DSA:1.10.10.10 2 84 8.5E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_24315 57f607df7b1b75d534966bbf66572720 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 1.4E-15 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_35245 b9df51d6a5eb03cc4d7ecb1bebe6112d 457 Pfam PF00067 Cytochrome P450 15 431 1.5E-82 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_35245 b9df51d6a5eb03cc4d7ecb1bebe6112d 457 SUPERFAMILY SSF48264 12 449 2.1E-110 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_35245 b9df51d6a5eb03cc4d7ecb1bebe6112d 457 Gene3D G3DSA:1.10.630.10 14 450 9.1E-115 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_35245 b9df51d6a5eb03cc4d7ecb1bebe6112d 457 PRINTS PR00463 E-class P450 group I signature 42 61 1.3E-24 T 13-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_35245 b9df51d6a5eb03cc4d7ecb1bebe6112d 457 PRINTS PR00463 E-class P450 group I signature 354 378 1.3E-24 T 13-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_35245 b9df51d6a5eb03cc4d7ecb1bebe6112d 457 PRINTS PR00463 E-class P450 group I signature 387 397 1.3E-24 T 13-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_35245 b9df51d6a5eb03cc4d7ecb1bebe6112d 457 PRINTS PR00463 E-class P450 group I signature 397 420 1.3E-24 T 13-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_35245 b9df51d6a5eb03cc4d7ecb1bebe6112d 457 PRINTS PR00463 E-class P450 group I signature 252 269 1.3E-24 T 13-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_35245 b9df51d6a5eb03cc4d7ecb1bebe6112d 457 PRINTS PR00463 E-class P450 group I signature 272 298 1.3E-24 T 13-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_35245 b9df51d6a5eb03cc4d7ecb1bebe6112d 457 PRINTS PR00385 P450 superfamily signature 397 408 5.0E-14 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_35245 b9df51d6a5eb03cc4d7ecb1bebe6112d 457 PRINTS PR00385 P450 superfamily signature 315 326 5.0E-14 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_35245 b9df51d6a5eb03cc4d7ecb1bebe6112d 457 PRINTS PR00385 P450 superfamily signature 388 397 5.0E-14 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_35245 b9df51d6a5eb03cc4d7ecb1bebe6112d 457 PRINTS PR00385 P450 superfamily signature 263 280 5.0E-14 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_35245 b9df51d6a5eb03cc4d7ecb1bebe6112d 457 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 390 399 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RAM_15155 eff21738090f6dab53dbdd4038876cc5 119 SUPERFAMILY SSF46785 23 111 1.39E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_15155 eff21738090f6dab53dbdd4038876cc5 119 SMART SM00418 31 110 3.0E-16 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_15155 eff21738090f6dab53dbdd4038876cc5 119 Pfam PF12840 Helix-turn-helix domain 31 90 2.6E-8 T 13-10-2018 RAM_15155 eff21738090f6dab53dbdd4038876cc5 119 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 53 64 1.8E-11 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_15155 eff21738090f6dab53dbdd4038876cc5 119 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 66 81 1.8E-11 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_15155 eff21738090f6dab53dbdd4038876cc5 119 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 81 96 1.8E-11 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_15155 eff21738090f6dab53dbdd4038876cc5 119 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 33 48 1.8E-11 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_15155 eff21738090f6dab53dbdd4038876cc5 119 Gene3D G3DSA:1.10.10.10 2 114 4.8E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_28150 7bd2dcb6bcf4f7fc87c847738f4215c6 35 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 1 28 7.0E-9 T 13-10-2018 RAM_28150 7bd2dcb6bcf4f7fc87c847738f4215c6 35 Gene3D G3DSA:3.40.50.720 1 32 6.5E-9 T 13-10-2018 RAM_28150 7bd2dcb6bcf4f7fc87c847738f4215c6 35 SUPERFAMILY SSF51735 1 29 2.97E-9 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_38680 adbb54c35bc67c12f5da01effb7df883 72 SMART SM00530 6 62 3.2E-7 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_38680 adbb54c35bc67c12f5da01effb7df883 72 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 6 66 9.0E-19 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_38680 adbb54c35bc67c12f5da01effb7df883 72 SUPERFAMILY SSF47413 1 66 2.94E-15 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_38680 adbb54c35bc67c12f5da01effb7df883 72 Gene3D G3DSA:1.10.260.40 5 67 2.7E-9 T 13-10-2018 RAM_09245 c1d1ef8c6798835ca61327c809a20f45 239 Gene3D G3DSA:1.10.10.10 18 91 1.5E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_09245 c1d1ef8c6798835ca61327c809a20f45 239 SUPERFAMILY SSF48008 105 237 6.28E-23 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_09245 c1d1ef8c6798835ca61327c809a20f45 239 SMART SM00345 26 87 4.4E-18 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_09245 c1d1ef8c6798835ca61327c809a20f45 239 SMART SM00895 108 229 6.0E-15 T 13-10-2018 IPR011711 GntR, C-terminal RAM_09245 c1d1ef8c6798835ca61327c809a20f45 239 Pfam PF07729 FCD domain 109 228 3.1E-18 T 13-10-2018 IPR011711 GntR, C-terminal RAM_09245 c1d1ef8c6798835ca61327c809a20f45 239 Pfam PF00392 Bacterial regulatory proteins, gntR family 24 87 2.4E-18 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_09245 c1d1ef8c6798835ca61327c809a20f45 239 Gene3D G3DSA:1.20.120.530 99 236 2.6E-23 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_09245 c1d1ef8c6798835ca61327c809a20f45 239 SUPERFAMILY SSF46785 16 90 1.4E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_09245 c1d1ef8c6798835ca61327c809a20f45 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 59 75 1.3E-11 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_09245 c1d1ef8c6798835ca61327c809a20f45 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 45 59 1.3E-11 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_20310 bb0d718659515ff69cc75a29bc5dda33 949 Pfam PF14498 Glycosyl hydrolase family 65, N-terminal domain 43 279 8.1E-70 T 13-10-2018 IPR027414 Glycosyl hydrolase family 95, N-terminal domain KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807 RAM_20310 bb0d718659515ff69cc75a29bc5dda33 949 SUPERFAMILY SSF50370 811 947 1.16E-36 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_20310 bb0d718659515ff69cc75a29bc5dda33 949 Gene3D G3DSA:2.70.98.50 57 321 2.5E-229 T 13-10-2018 RAM_20310 bb0d718659515ff69cc75a29bc5dda33 949 SMART SM00458 811 947 1.3E-8 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_20310 bb0d718659515ff69cc75a29bc5dda33 949 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 849 934 1.0E-19 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_20310 bb0d718659515ff69cc75a29bc5dda33 949 Gene3D G3DSA:1.50.10.10 53 748 2.5E-229 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 RAM_20310 bb0d718659515ff69cc75a29bc5dda33 949 Gene3D G3DSA:2.60.40.1180 322 797 2.5E-229 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta RAM_20310 bb0d718659515ff69cc75a29bc5dda33 949 SUPERFAMILY SSF48208 287 749 1.59E-84 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_20310 bb0d718659515ff69cc75a29bc5dda33 949 Gene3D G3DSA:2.80.10.50 813 947 1.2E-34 T 13-10-2018 RAM_33690 211bb7393763dccc98426fe3c0e24832 366 SUPERFAMILY SSF51604 114 366 2.36E-54 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RAM_33690 211bb7393763dccc98426fe3c0e24832 366 Pfam PF13378 Enolase C-terminal domain-like 150 359 2.1E-51 T 13-10-2018 IPR029065 Enolase C-terminal domain-like RAM_33690 211bb7393763dccc98426fe3c0e24832 366 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 31 126 2.8E-10 T 13-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain RAM_33690 211bb7393763dccc98426fe3c0e24832 366 SMART SM00922 145 246 8.3E-17 T 13-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal RAM_33690 211bb7393763dccc98426fe3c0e24832 366 ProSitePatterns PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1. 101 126 - T 13-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 RAM_33690 211bb7393763dccc98426fe3c0e24832 366 Gene3D G3DSA:3.20.20.120 119 355 1.5E-109 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RAM_33690 211bb7393763dccc98426fe3c0e24832 366 Gene3D G3DSA:3.30.390.10 18 118 1.5E-109 T 13-10-2018 IPR029017 Enolase-like, N-terminal RAM_33690 211bb7393763dccc98426fe3c0e24832 366 SUPERFAMILY SSF54826 10 129 8.84E-23 T 13-10-2018 RAM_26475 6ea902450ba0d77510b5950dc1ec063e 290 Gene3D G3DSA:1.10.3720.10 24 281 4.4E-53 T 13-10-2018 IPR035906 MetI-like superfamily RAM_26475 6ea902450ba0d77510b5950dc1ec063e 290 SUPERFAMILY SSF161098 24 290 1.5E-61 T 13-10-2018 IPR035906 MetI-like superfamily RAM_26475 6ea902450ba0d77510b5950dc1ec063e 290 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 106 277 7.0E-18 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_18655 5b3cfbab841d00c58f9864687191bc17 226 Pfam PF13305 WHG domain 93 191 4.4E-6 T 13-10-2018 IPR025996 WHG domain RAM_18655 5b3cfbab841d00c58f9864687191bc17 226 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 66 2.4E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_18655 5b3cfbab841d00c58f9864687191bc17 226 SUPERFAMILY SSF48498 91 214 1.71E-22 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_18655 5b3cfbab841d00c58f9864687191bc17 226 SUPERFAMILY SSF46689 8 81 2.0E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_18655 5b3cfbab841d00c58f9864687191bc17 226 Gene3D G3DSA:1.10.357.10 2 215 2.0E-57 T 13-10-2018 RAM_20500 34a092c923c478e26ddade4ece8e2b56 308 SUPERFAMILY SSF53901 156 308 6.29E-19 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_20500 34a092c923c478e26ddade4ece8e2b56 308 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 219 307 7.9E-13 T 13-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 RAM_20500 34a092c923c478e26ddade4ece8e2b56 308 SUPERFAMILY SSF53901 3 173 2.79E-8 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_20500 34a092c923c478e26ddade4ece8e2b56 308 Gene3D G3DSA:3.40.47.10 3 184 8.1E-9 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_20500 34a092c923c478e26ddade4ece8e2b56 308 Gene3D G3DSA:3.40.47.10 185 307 4.3E-26 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_33800 41057377e85cadb5e47cd5ba55408e0d 317 Pfam PF12680 SnoaL-like domain 191 296 1.3E-7 T 13-10-2018 IPR037401 SnoaL-like domain RAM_33800 41057377e85cadb5e47cd5ba55408e0d 317 Gene3D G3DSA:1.10.1740.10 3 85 2.0E-8 T 13-10-2018 RAM_33800 41057377e85cadb5e47cd5ba55408e0d 317 Gene3D G3DSA:1.10.10.10 116 175 3.2E-10 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_33800 41057377e85cadb5e47cd5ba55408e0d 317 SUPERFAMILY SSF54427 184 306 1.06E-15 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_33800 41057377e85cadb5e47cd5ba55408e0d 317 Gene3D G3DSA:3.10.450.50 181 311 6.0E-10 T 13-10-2018 RAM_33800 41057377e85cadb5e47cd5ba55408e0d 317 SUPERFAMILY SSF88659 117 174 9.72E-12 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_33800 41057377e85cadb5e47cd5ba55408e0d 317 SUPERFAMILY SSF88946 9 95 7.46E-13 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_33800 41057377e85cadb5e47cd5ba55408e0d 317 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 13 173 1.3E-15 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_33800 41057377e85cadb5e47cd5ba55408e0d 317 Pfam PF04542 Sigma-70 region 2 16 80 7.2E-11 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_33800 41057377e85cadb5e47cd5ba55408e0d 317 Pfam PF08281 Sigma-70, region 4 120 172 4.1E-12 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_33810 977ebd32b695e07d90b360f43a48d8e3 188 Pfam PF02627 Carboxymuconolactone decarboxylase family 57 124 2.6E-6 T 13-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RAM_33810 977ebd32b695e07d90b360f43a48d8e3 188 Gene3D G3DSA:1.20.1290.10 17 177 2.1E-29 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_33810 977ebd32b695e07d90b360f43a48d8e3 188 SUPERFAMILY SSF69118 1 174 2.08E-37 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_12135 b0cb995d912b3cd8946e017ba5794a3b 275 Gene3D G3DSA:3.10.310.10 138 263 2.6E-88 T 13-10-2018 RAM_12135 b0cb995d912b3cd8946e017ba5794a3b 275 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 71 85 - T 13-10-2018 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 RAM_12135 b0cb995d912b3cd8946e017ba5794a3b 275 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 4 267 29.861 T 13-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 RAM_12135 b0cb995d912b3cd8946e017ba5794a3b 275 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 4 265 4.9E-68 T 13-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 RAM_12135 b0cb995d912b3cd8946e017ba5794a3b 275 SUPERFAMILY SSF54506 136 265 8.64E-31 T 13-10-2018 RAM_12135 b0cb995d912b3cd8946e017ba5794a3b 275 SUPERFAMILY SSF54506 4 131 1.83E-34 T 13-10-2018 RAM_12135 b0cb995d912b3cd8946e017ba5794a3b 275 Pfam PF01678 Diaminopimelate epimerase 6 130 1.6E-36 T 13-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 RAM_12135 b0cb995d912b3cd8946e017ba5794a3b 275 Pfam PF01678 Diaminopimelate epimerase 147 250 5.6E-19 T 13-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 RAM_12135 b0cb995d912b3cd8946e017ba5794a3b 275 Gene3D G3DSA:3.10.310.10 6 137 2.6E-88 T 13-10-2018 RAM_46935 ce94f860ce213d0c3c4e8d93357d3fc8 237 Gene3D G3DSA:3.40.50.300 1 231 1.5E-66 T 13-10-2018 RAM_46935 ce94f860ce213d0c3c4e8d93357d3fc8 237 Pfam PF00005 ABC transporter 12 158 1.5E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_46935 ce94f860ce213d0c3c4e8d93357d3fc8 237 SMART SM00382 21 207 5.7E-18 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_46935 ce94f860ce213d0c3c4e8d93357d3fc8 237 SUPERFAMILY SSF52540 2 210 5.45E-67 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_46935 ce94f860ce213d0c3c4e8d93357d3fc8 237 ProSitePatterns PS00211 ABC transporters family signature. 131 145 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_41490 bf3d59fe97b71e67c6f44f2331e4cf87 213 Pfam PF03006 Haemolysin-III related 5 204 6.2E-40 T 13-10-2018 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 RAM_41490 bf3d59fe97b71e67c6f44f2331e4cf87 213 TIGRFAM TIGR01065 hlyIII: channel protein, hemolysin III family 6 210 6.0E-59 T 13-10-2018 IPR005744 Hly-III GO:0016021|GO:0019835 RAM_09485 8acc50b348492e9decc3a2d54878fd3b 370 Pfam PF13478 XdhC Rossmann domain 203 349 8.0E-43 T 13-10-2018 IPR027051 XdhC Rossmann domain RAM_09485 8acc50b348492e9decc3a2d54878fd3b 370 Gene3D G3DSA:3.40.50.720 202 355 2.3E-58 T 13-10-2018 RAM_09485 8acc50b348492e9decc3a2d54878fd3b 370 Pfam PF02625 XdhC and CoxI family 12 78 1.3E-20 T 13-10-2018 IPR003777 XdhC- CoxI RAM_09485 8acc50b348492e9decc3a2d54878fd3b 370 Pfam PF02625 XdhC and CoxI family 118 180 2.3E-18 T 13-10-2018 IPR003777 XdhC- CoxI RAM_37950 6b1c87a32b2c9f5afae7a9e2ad5603e1 394 Pfam PF00150 Cellulase (glycosyl hydrolase family 5) 57 363 1.1E-62 T 13-10-2018 IPR001547 Glycoside hydrolase, family 5 GO:0004553|GO:0005975 RAM_37950 6b1c87a32b2c9f5afae7a9e2ad5603e1 394 SUPERFAMILY SSF51445 1 392 1.19E-75 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_37950 6b1c87a32b2c9f5afae7a9e2ad5603e1 394 Gene3D G3DSA:3.20.20.80 31 392 3.7E-119 T 13-10-2018 RAM_05770 780421af09448be03aa240a861319144 359 Pfam PF02254 TrkA-N domain 147 264 1.1E-25 T 13-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 RAM_05770 780421af09448be03aa240a861319144 359 Gene3D G3DSA:3.40.50.720 139 280 7.7E-39 T 13-10-2018 RAM_05770 780421af09448be03aa240a861319144 359 Pfam PF07885 Ion channel 47 126 3.9E-12 T 13-10-2018 IPR013099 Potassium channel domain RAM_05770 780421af09448be03aa240a861319144 359 Gene3D G3DSA:1.10.287.70 35 138 1.2E-13 T 13-10-2018 RAM_05770 780421af09448be03aa240a861319144 359 SUPERFAMILY SSF81324 24 163 6.67E-19 T 13-10-2018 RAM_05770 780421af09448be03aa240a861319144 359 SUPERFAMILY SSF51735 142 287 5.91E-26 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_34250 7273433ded11db674416165bdf833335 408 SUPERFAMILY SSF141571 265 340 4.71E-6 T 13-10-2018 RAM_34250 7273433ded11db674416165bdf833335 408 Pfam PF13576 Pentapeptide repeats (9 copies) 308 355 1.3E-8 T 13-10-2018 IPR001646 Pentapeptide repeat RAM_34250 7273433ded11db674416165bdf833335 408 Gene3D G3DSA:2.160.20.100 262 393 1.8E-9 T 13-10-2018 RAM_46925 0c7214f786d9ab64639c15f49538ee9d 187 Gene3D G3DSA:3.40.50.2020 4 187 2.4E-46 T 13-10-2018 RAM_46925 0c7214f786d9ab64639c15f49538ee9d 187 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 187 23.463 T 13-10-2018 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RAM_46925 0c7214f786d9ab64639c15f49538ee9d 187 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 24 178 2.7E-34 T 13-10-2018 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RAM_46925 0c7214f786d9ab64639c15f49538ee9d 187 SUPERFAMILY SSF53271 16 183 3.02E-31 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like RAM_46925 0c7214f786d9ab64639c15f49538ee9d 187 Pfam PF00156 Phosphoribosyl transferase domain 100 166 4.4E-10 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 RAM_41875 38cfc203050503f5ed071068b5d2b592 498 Pfam PF01494 FAD binding domain 3 352 2.9E-57 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_41875 38cfc203050503f5ed071068b5d2b592 498 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 3 25 1.7E-39 T 13-10-2018 RAM_41875 38cfc203050503f5ed071068b5d2b592 498 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 302 318 1.7E-39 T 13-10-2018 RAM_41875 38cfc203050503f5ed071068b5d2b592 498 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 166 181 1.7E-39 T 13-10-2018 RAM_41875 38cfc203050503f5ed071068b5d2b592 498 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 338 354 1.7E-39 T 13-10-2018 RAM_41875 38cfc203050503f5ed071068b5d2b592 498 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 320 338 1.7E-39 T 13-10-2018 RAM_41875 38cfc203050503f5ed071068b5d2b592 498 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 287 302 1.7E-39 T 13-10-2018 RAM_41875 38cfc203050503f5ed071068b5d2b592 498 Gene3D G3DSA:3.50.50.60 4 351 8.9E-91 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_41875 38cfc203050503f5ed071068b5d2b592 498 SUPERFAMILY SSF51905 2 364 3.31E-53 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_41875 38cfc203050503f5ed071068b5d2b592 498 Gene3D G3DSA:3.30.70.2450 195 276 8.9E-91 T 13-10-2018 RAM_41875 38cfc203050503f5ed071068b5d2b592 498 Gene3D G3DSA:3.40.30.120 397 498 2.8E-22 T 13-10-2018 RAM_06445 9b73f6acdee5f9a3a44a79542b1a2acd 383 Pfam PF01494 FAD binding domain 306 340 3.5E-8 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_06445 9b73f6acdee5f9a3a44a79542b1a2acd 383 Pfam PF01494 FAD binding domain 1 156 2.5E-8 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_06445 9b73f6acdee5f9a3a44a79542b1a2acd 383 SUPERFAMILY SSF51905 1 379 9.55E-44 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_06445 9b73f6acdee5f9a3a44a79542b1a2acd 383 Gene3D G3DSA:3.50.50.60 1 376 5.3E-103 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_44015 f36982ef74da18ad13682766ac094592 142 ProSitePatterns PS01117 MarR-type HTH domain signature. 64 98 - T 13-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site RAM_44015 f36982ef74da18ad13682766ac094592 142 SUPERFAMILY SSF46785 12 138 9.94E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_44015 f36982ef74da18ad13682766ac094592 142 Gene3D G3DSA:1.10.10.10 8 141 3.5E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_44015 f36982ef74da18ad13682766ac094592 142 SMART SM00347 25 125 5.4E-16 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_44015 f36982ef74da18ad13682766ac094592 142 Pfam PF01047 MarR family 37 89 3.3E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_42400 c30115292711ccace3a9c4b77e48259d 421 TIGRFAM TIGR00553 pabB: aminodeoxychorismate synthase, component I 76 407 3.5E-99 T 13-10-2018 IPR005802 Para-aminobenzoate synthase, component I GO:0009396 KEGG: 00790+2.6.1.85|MetaCyc: PWY-6543 RAM_42400 c30115292711ccace3a9c4b77e48259d 421 SUPERFAMILY SSF56322 72 411 6.8E-95 T 13-10-2018 IPR005801 ADC synthase GO:0009058 RAM_42400 c30115292711ccace3a9c4b77e48259d 421 PRINTS PR00095 Anthranilate synthase component I signature 251 264 1.7E-10 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RAM_42400 c30115292711ccace3a9c4b77e48259d 421 PRINTS PR00095 Anthranilate synthase component I signature 345 359 1.7E-10 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RAM_42400 c30115292711ccace3a9c4b77e48259d 421 PRINTS PR00095 Anthranilate synthase component I signature 265 278 1.7E-10 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RAM_42400 c30115292711ccace3a9c4b77e48259d 421 PRINTS PR00095 Anthranilate synthase component I signature 360 374 1.7E-10 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RAM_42400 c30115292711ccace3a9c4b77e48259d 421 Gene3D G3DSA:3.60.120.10 57 413 8.3E-104 T 13-10-2018 IPR005801 ADC synthase GO:0009058 RAM_42400 c30115292711ccace3a9c4b77e48259d 421 Pfam PF00425 chorismate binding enzyme 154 403 4.0E-75 T 13-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal RAM_10670 53a886364da49bc12111c74cf6d95e8a 414 SUPERFAMILY SSF53901 5 258 6.26E-66 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_10670 53a886364da49bc12111c74cf6d95e8a 414 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 5 252 3.9E-55 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal RAM_10670 53a886364da49bc12111c74cf6d95e8a 414 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 261 372 2.4E-27 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal RAM_10670 53a886364da49bc12111c74cf6d95e8a 414 SUPERFAMILY SSF53901 220 412 1.03E-61 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_10670 53a886364da49bc12111c74cf6d95e8a 414 Gene3D G3DSA:3.40.47.10 1 261 7.3E-77 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_10670 53a886364da49bc12111c74cf6d95e8a 414 SMART SM00825 Beta-ketoacyl synthase 6 406 7.1E-15 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RAM_10670 53a886364da49bc12111c74cf6d95e8a 414 Gene3D G3DSA:3.40.47.10 266 414 7.5E-41 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_40615 c0a3a0ab7d7f331e950d5420181bb48c 401 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 244 393 1.8E-33 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_40615 c0a3a0ab7d7f331e950d5420181bb48c 401 SUPERFAMILY SSF56645 76 255 1.13E-45 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_40615 c0a3a0ab7d7f331e950d5420181bb48c 401 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 132 227 2.4E-23 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RAM_40615 c0a3a0ab7d7f331e950d5420181bb48c 401 SUPERFAMILY SSF47203 243 395 1.16E-30 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_40615 c0a3a0ab7d7f331e950d5420181bb48c 401 Gene3D G3DSA:1.20.140.10 249 400 5.8E-29 T 13-10-2018 RAM_40615 c0a3a0ab7d7f331e950d5420181bb48c 401 Gene3D G3DSA:2.40.110.10 131 248 1.7E-37 T 13-10-2018 RAM_42950 67f49ec16e8915eafe38e71a92c2d339 284 Pfam PF08223 PaaX-like protein C-terminal domain 183 278 8.6E-26 T 13-10-2018 IPR013225 PaaX-like, C-terminal RAM_42950 67f49ec16e8915eafe38e71a92c2d339 284 SUPERFAMILY SSF46785 45 101 9.28E-5 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_42950 67f49ec16e8915eafe38e71a92c2d339 284 PIRSF PIRSF020623 7 283 1.1E-79 T 13-10-2018 IPR011965 Phenylacetic acid degradation operon negative regulatory protein PaaX GO:0006351 RAM_42950 67f49ec16e8915eafe38e71a92c2d339 284 Pfam PF07848 PaaX-like protein 20 86 7.9E-19 T 13-10-2018 IPR012906 PaaX-like, N-terminal RAM_42950 67f49ec16e8915eafe38e71a92c2d339 284 Gene3D G3DSA:1.10.10.10 18 99 2.1E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_19230 a7642b01be3cbccc5052d6058466ee9d 103 SMART SM00418 16 95 3.0E-8 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_19230 a7642b01be3cbccc5052d6058466ee9d 103 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 66 81 2.8E-7 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_19230 a7642b01be3cbccc5052d6058466ee9d 103 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 51 66 2.8E-7 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_19230 a7642b01be3cbccc5052d6058466ee9d 103 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 18 33 2.8E-7 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_19230 a7642b01be3cbccc5052d6058466ee9d 103 SUPERFAMILY SSF46785 6 95 2.86E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_19230 a7642b01be3cbccc5052d6058466ee9d 103 Pfam PF12840 Helix-turn-helix domain 21 74 6.1E-9 T 13-10-2018 RAM_19230 a7642b01be3cbccc5052d6058466ee9d 103 Gene3D G3DSA:1.10.10.10 4 102 3.7E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_22675 579f8fc81e46993bba24a4e2723a1805 112 Pfam PF07963 Prokaryotic N-terminal methylation motif 9 34 9.4E-10 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site RAM_22675 579f8fc81e46993bba24a4e2723a1805 112 Gene3D G3DSA:3.30.700.10 15 111 2.5E-15 T 13-10-2018 RAM_22675 579f8fc81e46993bba24a4e2723a1805 112 SUPERFAMILY SSF54523 15 102 1.02E-15 T 13-10-2018 RAM_22675 579f8fc81e46993bba24a4e2723a1805 112 PRINTS PR00885 Bacterial general secretion pathway protein H signature 10 24 2.0E-5 T 13-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 RAM_22675 579f8fc81e46993bba24a4e2723a1805 112 PRINTS PR00885 Bacterial general secretion pathway protein H signature 25 39 2.0E-5 T 13-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 RAM_22675 579f8fc81e46993bba24a4e2723a1805 112 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 12 34 6.4E-9 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site RAM_18040 a87e54933bc6108f6d7791ec3e5006e8 406 Gene3D G3DSA:1.20.1250.20 18 401 1.4E-37 T 13-10-2018 RAM_18040 a87e54933bc6108f6d7791ec3e5006e8 406 SUPERFAMILY SSF103473 10 403 3.4E-42 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_18040 a87e54933bc6108f6d7791ec3e5006e8 406 Pfam PF07690 Major Facilitator Superfamily 29 281 8.4E-20 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_07540 6f7c0d454227dded1b2963d2c11a71f7 247 Pfam PF00970 Oxidoreductase FAD-binding domain 23 108 4.0E-12 T 13-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 RAM_07540 6f7c0d454227dded1b2963d2c11a71f7 247 Gene3D G3DSA:2.40.30.10 10 107 5.0E-20 T 13-10-2018 RAM_07540 6f7c0d454227dded1b2963d2c11a71f7 247 PRINTS PR00410 Phenol hydroxylase reductase family signature 40 52 2.3E-7 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RAM_07540 6f7c0d454227dded1b2963d2c11a71f7 247 PRINTS PR00410 Phenol hydroxylase reductase family signature 210 218 2.3E-7 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RAM_07540 6f7c0d454227dded1b2963d2c11a71f7 247 PRINTS PR00410 Phenol hydroxylase reductase family signature 120 139 2.3E-7 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RAM_07540 6f7c0d454227dded1b2963d2c11a71f7 247 SUPERFAMILY SSF52343 109 244 2.75E-29 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RAM_07540 6f7c0d454227dded1b2963d2c11a71f7 247 SUPERFAMILY SSF63380 10 110 9.5E-23 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RAM_07540 6f7c0d454227dded1b2963d2c11a71f7 247 Gene3D G3DSA:3.40.50.80 115 246 1.3E-26 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RAM_07540 6f7c0d454227dded1b2963d2c11a71f7 247 Pfam PF00175 Oxidoreductase NAD-binding domain 121 224 3.2E-9 T 13-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 RAM_14755 5ec6593cb7268d981524acd29ef8a03a 312 SUPERFAMILY SSF53901 2 310 2.97E-56 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_14755 5ec6593cb7268d981524acd29ef8a03a 312 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 105 181 1.5E-28 T 13-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 RAM_14755 5ec6593cb7268d981524acd29ef8a03a 312 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 2 311 57.179 T 13-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 RAM_14755 5ec6593cb7268d981524acd29ef8a03a 312 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 221 310 1.5E-24 T 13-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 RAM_14755 5ec6593cb7268d981524acd29ef8a03a 312 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 5 310 4.3E-92 T 13-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 RAM_14755 5ec6593cb7268d981524acd29ef8a03a 312 Gene3D G3DSA:3.40.47.10 3 312 1.3E-101 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_12695 46605b20a854f72ec7fc1e2dee77c0df 111 SUPERFAMILY SSF46785 1 100 4.2E-30 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_12695 46605b20a854f72ec7fc1e2dee77c0df 111 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 41 56 4.3E-8 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_12695 46605b20a854f72ec7fc1e2dee77c0df 111 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 9 24 4.3E-8 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_12695 46605b20a854f72ec7fc1e2dee77c0df 111 Pfam PF12840 Helix-turn-helix domain 8 64 1.5E-17 T 13-10-2018 RAM_12695 46605b20a854f72ec7fc1e2dee77c0df 111 Gene3D G3DSA:1.10.10.10 1 106 8.5E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_12695 46605b20a854f72ec7fc1e2dee77c0df 111 SMART SM00418 7 85 1.6E-16 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_31980 f06104fb29e78d7ba8b2ed2201666347 1029 SUPERFAMILY SSF52777 623 811 4.15E-35 T 13-10-2018 RAM_31980 f06104fb29e78d7ba8b2ed2201666347 1029 Pfam PF13193 AMP-binding enzyme C-terminal domain 436 507 2.8E-7 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_31980 f06104fb29e78d7ba8b2ed2201666347 1029 ProSitePatterns PS00012 Phosphopantetheine attachment site. 553 568 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_31980 f06104fb29e78d7ba8b2ed2201666347 1029 SUPERFAMILY SSF47336 525 591 1.57E-11 T 13-10-2018 IPR036736 ACP-like superfamily RAM_31980 f06104fb29e78d7ba8b2ed2201666347 1029 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 51 451 1.5E-117 T 13-10-2018 IPR010071 Amino acid adenylation domain RAM_31980 f06104fb29e78d7ba8b2ed2201666347 1029 Pfam PF00550 Phosphopantetheine attachment site 532 592 5.5E-10 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_31980 f06104fb29e78d7ba8b2ed2201666347 1029 SMART SM00823 Phosphopantetheine attachment site 530 597 8.3E-4 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_31980 f06104fb29e78d7ba8b2ed2201666347 1029 Gene3D G3DSA:3.30.559.10 631 973 6.9E-100 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_31980 f06104fb29e78d7ba8b2ed2201666347 1029 Gene3D G3DSA:3.30.300.30 422 523 6.4E-30 T 13-10-2018 RAM_31980 f06104fb29e78d7ba8b2ed2201666347 1029 Gene3D G3DSA:1.10.1200.10 524 594 1.6E-15 T 13-10-2018 IPR036736 ACP-like superfamily RAM_31980 f06104fb29e78d7ba8b2ed2201666347 1029 Pfam PF00501 AMP-binding enzyme 29 426 9.3E-87 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_31980 f06104fb29e78d7ba8b2ed2201666347 1029 Gene3D G3DSA:3.40.50.12780 16 421 4.2E-126 T 13-10-2018 RAM_31980 f06104fb29e78d7ba8b2ed2201666347 1029 Gene3D G3DSA:3.30.559.30 797 1028 6.9E-100 T 13-10-2018 RAM_31980 f06104fb29e78d7ba8b2ed2201666347 1029 SUPERFAMILY SSF56801 18 543 7.2E-136 T 13-10-2018 RAM_31980 f06104fb29e78d7ba8b2ed2201666347 1029 Pfam PF00668 Condensation domain 627 1028 1.6E-56 T 13-10-2018 IPR001242 Condensation domain RAM_31980 f06104fb29e78d7ba8b2ed2201666347 1029 SUPERFAMILY SSF52777 797 1023 3.45E-47 T 13-10-2018 RAM_31980 f06104fb29e78d7ba8b2ed2201666347 1029 ProSitePatterns PS00455 Putative AMP-binding domain signature. 171 182 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_01090 5d119e4f6e4b58bea0b9d860188337c0 322 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 28 302 1.3E-23 T 13-10-2018 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD RAM_17775 3818c12d820f5edb10e4ca86270052bf 330 Pfam PF00296 Luciferase-like monooxygenase 14 263 5.7E-35 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_17775 3818c12d820f5edb10e4ca86270052bf 330 Gene3D G3DSA:3.20.20.30 6 329 1.7E-57 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_17775 3818c12d820f5edb10e4ca86270052bf 330 SUPERFAMILY SSF51679 7 328 1.2E-52 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_45125 4b4362c64b72a0043ae627d42038dc98 951 Gene3D G3DSA:3.40.50.140 19 164 2.6E-56 T 13-10-2018 RAM_45125 4b4362c64b72a0043ae627d42038dc98 951 SUPERFAMILY SSF56712 20 606 3.4E-177 T 13-10-2018 IPR023405 DNA topoisomerase, type IA, core domain RAM_45125 4b4362c64b72a0043ae627d42038dc98 951 Pfam PF13368 Topoisomerase C-terminal repeat 852 904 7.9E-20 T 13-10-2018 IPR025589 Topoisomerase C-terminal repeat RAM_45125 4b4362c64b72a0043ae627d42038dc98 951 Pfam PF13368 Topoisomerase C-terminal repeat 707 780 7.7E-13 T 13-10-2018 IPR025589 Topoisomerase C-terminal repeat RAM_45125 4b4362c64b72a0043ae627d42038dc98 951 Pfam PF13368 Topoisomerase C-terminal repeat 785 838 1.3E-17 T 13-10-2018 IPR025589 Topoisomerase C-terminal repeat RAM_45125 4b4362c64b72a0043ae627d42038dc98 951 Pfam PF13368 Topoisomerase C-terminal repeat 648 701 8.9E-9 T 13-10-2018 IPR025589 Topoisomerase C-terminal repeat RAM_45125 4b4362c64b72a0043ae627d42038dc98 951 Gene3D G3DSA:1.10.290.10 303 431 8.0E-176 T 13-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 RAM_45125 4b4362c64b72a0043ae627d42038dc98 951 SMART SM00437 295 565 1.8E-119 T 13-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 RAM_45125 4b4362c64b72a0043ae627d42038dc98 951 SMART SM00493 20 134 7.3E-36 T 13-10-2018 IPR006171 TOPRIM domain RAM_45125 4b4362c64b72a0043ae627d42038dc98 951 Gene3D G3DSA:2.70.20.10 214 512 8.0E-176 T 13-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 RAM_45125 4b4362c64b72a0043ae627d42038dc98 951 Pfam PF01751 Toprim domain 22 143 3.3E-28 T 13-10-2018 IPR006171 TOPRIM domain RAM_45125 4b4362c64b72a0043ae627d42038dc98 951 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 332 346 - T 13-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 RAM_45125 4b4362c64b72a0043ae627d42038dc98 951 Pfam PF01131 DNA topoisomerase 158 602 4.7E-121 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 RAM_45125 4b4362c64b72a0043ae627d42038dc98 951 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 337 346 9.9E-36 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 RAM_45125 4b4362c64b72a0043ae627d42038dc98 951 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 528 542 9.9E-36 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 RAM_45125 4b4362c64b72a0043ae627d42038dc98 951 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 108 121 9.9E-36 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 RAM_45125 4b4362c64b72a0043ae627d42038dc98 951 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 416 432 9.9E-36 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 RAM_45125 4b4362c64b72a0043ae627d42038dc98 951 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 192 210 9.9E-36 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 RAM_45125 4b4362c64b72a0043ae627d42038dc98 951 Hamap MF_00952 DNA topoisomerase 1 [topA]. 20 806 55.547 T 13-10-2018 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 RAM_45125 4b4362c64b72a0043ae627d42038dc98 951 SMART SM00436 134 222 7.6E-43 T 13-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 RAM_45125 4b4362c64b72a0043ae627d42038dc98 951 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 22 678 1.7E-247 T 13-10-2018 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 RAM_45125 4b4362c64b72a0043ae627d42038dc98 951 Gene3D G3DSA:1.10.460.10 165 605 8.0E-176 T 13-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 RAM_34945 d3416db71e5ad2b3cd751391a33f7e37 268 SMART SM00898 2 108 3.2E-18 T 13-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 RAM_34945 d3416db71e5ad2b3cd751391a33f7e37 268 Pfam PF06827 Zinc finger found in FPG and IleRS 240 268 5.4E-8 T 13-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 RAM_34945 d3416db71e5ad2b3cd751391a33f7e37 268 SUPERFAMILY SSF81624 2 123 1.22E-22 T 13-10-2018 IPR035937 MutM-like, N-terminal RAM_34945 d3416db71e5ad2b3cd751391a33f7e37 268 Gene3D G3DSA:3.20.190.10 2 123 2.6E-10 T 13-10-2018 IPR035937 MutM-like, N-terminal RAM_34945 d3416db71e5ad2b3cd751391a33f7e37 268 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 122 207 7.0E-18 T 13-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 RAM_34945 d3416db71e5ad2b3cd751391a33f7e37 268 SMART SM01232 122 214 7.0E-31 T 13-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 RAM_34945 d3416db71e5ad2b3cd751391a33f7e37 268 Gene3D G3DSA:1.10.8.50 124 268 4.1E-39 T 13-10-2018 RAM_34945 d3416db71e5ad2b3cd751391a33f7e37 268 SUPERFAMILY SSF57716 220 268 1.85E-13 T 13-10-2018 RAM_34945 d3416db71e5ad2b3cd751391a33f7e37 268 SUPERFAMILY SSF46946 121 206 1.35E-22 T 13-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 RAM_34945 d3416db71e5ad2b3cd751391a33f7e37 268 ProSitePatterns PS01242 Zinc finger FPG-type signature. 243 267 - T 13-10-2018 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 RAM_42015 d3e8b00e85c4aa0c8aa0f1f92e96d22d 155 Gene3D G3DSA:2.60.120.10 22 154 2.8E-25 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_42015 d3e8b00e85c4aa0c8aa0f1f92e96d22d 155 SUPERFAMILY SSF51182 9 145 1.36E-19 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RAM_42015 d3e8b00e85c4aa0c8aa0f1f92e96d22d 155 Pfam PF07883 Cupin domain 48 106 2.4E-10 T 13-10-2018 IPR013096 Cupin 2, conserved barrel RAM_14490 d76515bf4b4d7236173e8e132c3edbee 209 Pfam PF00440 Bacterial regulatory proteins, tetR family 31 57 9.5E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_14490 d76515bf4b4d7236173e8e132c3edbee 209 Gene3D G3DSA:1.10.10.60 17 71 3.9E-13 T 13-10-2018 RAM_14490 d76515bf4b4d7236173e8e132c3edbee 209 Gene3D G3DSA:1.10.357.10 72 205 6.0E-5 T 13-10-2018 RAM_14490 d76515bf4b4d7236173e8e132c3edbee 209 SUPERFAMILY SSF46689 17 80 4.89E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_13125 0e1e065592a4f41016d7cca313173073 257 Pfam PF00005 ABC transporter 21 172 1.7E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_13125 0e1e065592a4f41016d7cca313173073 257 SUPERFAMILY SSF52540 3 231 5.11E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_13125 0e1e065592a4f41016d7cca313173073 257 SMART SM00382 30 220 2.7E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_13125 0e1e065592a4f41016d7cca313173073 257 Gene3D G3DSA:3.40.50.300 3 244 4.8E-62 T 13-10-2018 RAM_47345 a709fbd130f9123b58cdf9af5ed3eee6 218 Gene3D G3DSA:1.10.357.10 8 210 1.9E-57 T 13-10-2018 RAM_47345 a709fbd130f9123b58cdf9af5ed3eee6 218 SUPERFAMILY SSF46689 11 92 1.28E-20 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_47345 a709fbd130f9123b58cdf9af5ed3eee6 218 Pfam PF00440 Bacterial regulatory proteins, tetR family 24 70 1.5E-16 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_47345 a709fbd130f9123b58cdf9af5ed3eee6 218 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 45 68 1.0E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_47345 a709fbd130f9123b58cdf9af5ed3eee6 218 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 24 37 1.0E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_02455 0eaed8b2bb1de658fe5cc14b75fa5f67 518 Pfam PF00174 Oxidoreductase molybdopterin binding domain 244 392 4.3E-36 T 13-10-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 RAM_02455 0eaed8b2bb1de658fe5cc14b75fa5f67 518 SUPERFAMILY SSF56524 226 415 1.7E-55 T 13-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 RAM_02455 0eaed8b2bb1de658fe5cc14b75fa5f67 518 SUPERFAMILY SSF81296 408 515 1.61E-22 T 13-10-2018 IPR014756 Immunoglobulin E-set RAM_02455 0eaed8b2bb1de658fe5cc14b75fa5f67 518 Gene3D G3DSA:2.60.40.650 414 517 2.8E-24 T 13-10-2018 RAM_02455 0eaed8b2bb1de658fe5cc14b75fa5f67 518 Gene3D G3DSA:3.90.420.10 187 413 1.9E-48 T 13-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 RAM_46600 88bd080199db680fabb140bded1516b3 424 SMART SM01210 322 411 4.3E-41 T 13-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RAM_46600 88bd080199db680fabb140bded1516b3 424 Gene3D G3DSA:3.30.470.20 183 320 1.6E-51 T 13-10-2018 RAM_46600 88bd080199db680fabb140bded1516b3 424 SUPERFAMILY SSF51246 321 410 4.24E-25 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 RAM_46600 88bd080199db680fabb140bded1516b3 424 Gene3D G3DSA:3.40.50.20 2 93 1.8E-30 T 13-10-2018 RAM_46600 88bd080199db680fabb140bded1516b3 424 SUPERFAMILY SSF56059 102 311 6.51E-52 T 13-10-2018 RAM_46600 88bd080199db680fabb140bded1516b3 424 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 2 411 2.8E-147 T 13-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RAM_46600 88bd080199db680fabb140bded1516b3 424 Gene3D G3DSA:3.90.600.10 322 408 3.0E-28 T 13-10-2018 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RAM_46600 88bd080199db680fabb140bded1516b3 424 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 323 408 9.0E-28 T 13-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RAM_46600 88bd080199db680fabb140bded1516b3 424 Gene3D G3DSA:3.30.1490.20 119 182 1.2E-9 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 RAM_46600 88bd080199db680fabb140bded1516b3 424 SMART SM01209 101 287 1.2E-107 T 13-10-2018 RAM_46600 88bd080199db680fabb140bded1516b3 424 SUPERFAMILY SSF52440 2 101 1.44E-29 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RAM_46600 88bd080199db680fabb140bded1516b3 424 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 281 288 - T 13-10-2018 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RAM_46600 88bd080199db680fabb140bded1516b3 424 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 101 287 2.4E-66 T 13-10-2018 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RAM_46600 88bd080199db680fabb140bded1516b3 424 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 2 100 6.8E-29 T 13-10-2018 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RAM_46600 88bd080199db680fabb140bded1516b3 424 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 411 39.384 T 13-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RAM_11985 c9d41a508623c4a833ce662bccddd0cf 283 SMART SM00530 15 69 1.0E-7 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_11985 c9d41a508623c4a833ce662bccddd0cf 283 Gene3D G3DSA:1.10.260.40 3 65 4.6E-8 T 13-10-2018 RAM_11985 c9d41a508623c4a833ce662bccddd0cf 283 SUPERFAMILY SSF47413 15 61 1.32E-8 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_11985 c9d41a508623c4a833ce662bccddd0cf 283 Pfam PF13560 Helix-turn-helix domain 12 72 5.0E-9 T 13-10-2018 RAM_00665 55ecf14a8f8df24d8ccb17348c70421a 441 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 291 389 3.5E-9 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_00665 55ecf14a8f8df24d8ccb17348c70421a 441 SUPERFAMILY SSF55874 249 389 6.02E-19 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_00665 55ecf14a8f8df24d8ccb17348c70421a 441 SMART SM00387 283 390 5.9E-6 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_00665 55ecf14a8f8df24d8ccb17348c70421a 441 Gene3D G3DSA:3.30.565.10 249 391 1.5E-17 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_00665 55ecf14a8f8df24d8ccb17348c70421a 441 Pfam PF06580 Histidine kinase 194 272 4.8E-25 T 13-10-2018 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 RAM_43585 06908bccaab33bc96fd4cc24e644a8c7 205 Pfam PF12710 haloacid dehalogenase-like hydrolase 6 133 2.5E-11 T 13-10-2018 RAM_43585 06908bccaab33bc96fd4cc24e644a8c7 205 SUPERFAMILY SSF56784 5 199 2.48E-32 T 13-10-2018 IPR036412 HAD-like superfamily RAM_43585 06908bccaab33bc96fd4cc24e644a8c7 205 Gene3D G3DSA:3.40.50.1000 6 190 2.3E-24 T 13-10-2018 IPR023214 HAD superfamily RAM_43585 06908bccaab33bc96fd4cc24e644a8c7 205 Pfam PF13242 HAD-hyrolase-like 144 192 8.1E-5 T 13-10-2018 RAM_43585 06908bccaab33bc96fd4cc24e644a8c7 205 Gene3D G3DSA:1.10.150.240 16 80 2.3E-24 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 RAM_25150 71acff3c97ac787ea20d5dc572babe0f 255 Gene3D G3DSA:3.40.50.720 2 252 6.4E-49 T 13-10-2018 RAM_25150 71acff3c97ac787ea20d5dc572babe0f 255 SUPERFAMILY SSF51735 6 252 7.36E-51 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_25150 71acff3c97ac787ea20d5dc572babe0f 255 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 19 251 1.0E-68 T 13-10-2018 RAM_25150 71acff3c97ac787ea20d5dc572babe0f 255 PIRSF PIRSF000094 2 255 1.2E-86 T 13-10-2018 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 RAM_17145 0e013db07d75a70d32f8d8166c4ee24f 201 Gene3D G3DSA:1.10.260.130 35 126 4.5E-53 T 13-10-2018 RAM_17145 0e013db07d75a70d32f8d8166c4ee24f 201 Pfam PF03583 Secretory lipase 2 197 2.1E-36 T 13-10-2018 IPR005152 Lipase, secreted GO:0004806|GO:0016042 RAM_17145 0e013db07d75a70d32f8d8166c4ee24f 201 SUPERFAMILY SSF53474 2 170 1.25E-7 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_17145 0e013db07d75a70d32f8d8166c4ee24f 201 Gene3D G3DSA:3.40.50.1820 2 191 4.5E-53 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_27070 163b54fb38a143ad8dd0bdca1201cdf2 313 Gene3D G3DSA:3.20.20.70 19 313 9.0E-152 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_27070 163b54fb38a143ad8dd0bdca1201cdf2 313 PIRSF PIRSF029271 15 313 3.7E-151 T 13-10-2018 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 RAM_27070 163b54fb38a143ad8dd0bdca1201cdf2 313 TIGRFAM TIGR00343 TIGR00343: pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 28 313 5.8E-145 T 13-10-2018 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 RAM_27070 163b54fb38a143ad8dd0bdca1201cdf2 313 Pfam PF01680 SOR/SNZ family 26 231 5.6E-107 T 13-10-2018 IPR033755 PdxS/SNZ N-terminal domain KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 RAM_27070 163b54fb38a143ad8dd0bdca1201cdf2 313 Hamap MF_01824 Pyridoxal 5'-phosphate synthase subunit PdxS [pdxS]. 23 313 53.396 T 13-10-2018 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 RAM_27070 163b54fb38a143ad8dd0bdca1201cdf2 313 ProSitePatterns PS01235 PdxS/SNZ family signature. 224 242 - T 13-10-2018 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 RAM_27070 163b54fb38a143ad8dd0bdca1201cdf2 313 SUPERFAMILY SSF51366 37 286 2.45E-62 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 RAM_16725 3dc5fcd2f704a22e83027298da1b9fa8 332 Pfam PF00553 Cellulose binding domain 236 323 3.0E-21 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_16725 3dc5fcd2f704a22e83027298da1b9fa8 332 Gene3D G3DSA:2.60.40.290 234 331 7.0E-27 T 13-10-2018 IPR012291 CBM2, carbohydrate-binding domain superfamily GO:0004553|GO:0030247 RAM_16725 3dc5fcd2f704a22e83027298da1b9fa8 332 SMART SM00637 236 329 2.5E-31 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_16725 3dc5fcd2f704a22e83027298da1b9fa8 332 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 35 207 5.1E-18 T 13-10-2018 IPR013830 SGNH hydrolase-type esterase domain RAM_16725 3dc5fcd2f704a22e83027298da1b9fa8 332 SUPERFAMILY SSF52266 26 218 2.68E-31 T 13-10-2018 RAM_16725 3dc5fcd2f704a22e83027298da1b9fa8 332 Gene3D G3DSA:3.40.50.1110 26 229 3.8E-65 T 13-10-2018 IPR036514 SGNH hydrolase superfamily RAM_16725 3dc5fcd2f704a22e83027298da1b9fa8 332 SUPERFAMILY SSF49384 230 327 8.37E-27 T 13-10-2018 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily GO:0030246 RAM_07935 00da4d385cea0a263f427ba4591abc0b 136 SUPERFAMILY SSF54637 6 126 1.41E-26 T 13-10-2018 IPR029069 HotDog domain superfamily RAM_07935 00da4d385cea0a263f427ba4591abc0b 136 TIGRFAM TIGR02286 PaaD: phenylacetic acid degradation protein PaaD 16 130 1.8E-41 T 13-10-2018 IPR011973 Phenylacetic acid degradation protein PaaD GO:0016790 RAM_07935 00da4d385cea0a263f427ba4591abc0b 136 Gene3D G3DSA:3.10.129.10 1 135 1.3E-47 T 13-10-2018 RAM_07935 00da4d385cea0a263f427ba4591abc0b 136 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 16 113 4.5E-17 T 13-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 RAM_07935 00da4d385cea0a263f427ba4591abc0b 136 Pfam PF03061 Thioesterase superfamily 46 114 4.8E-9 T 13-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 RAM_19280 70ab493990a6945c40d136e338aa6008 358 Pfam PF00586 AIR synthase related protein, N-terminal domain 62 172 2.0E-17 T 13-10-2018 IPR016188 PurM-like, N-terminal domain RAM_19280 70ab493990a6945c40d136e338aa6008 358 Gene3D G3DSA:3.30.1330.10 30 176 3.4E-52 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily RAM_19280 70ab493990a6945c40d136e338aa6008 358 SUPERFAMILY SSF55326 28 175 1.92E-33 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily RAM_19280 70ab493990a6945c40d136e338aa6008 358 PIRSF PIRSF005644 24 358 1.8E-122 T 13-10-2018 IPR011854 Carbamoyl dehydratase HypE RAM_19280 70ab493990a6945c40d136e338aa6008 358 Gene3D G3DSA:3.90.650.10 180 358 1.5E-53 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily RAM_19280 70ab493990a6945c40d136e338aa6008 358 TIGRFAM TIGR02124 hypE: hydrogenase expression/formation protein HypE 28 358 3.9E-136 T 13-10-2018 IPR011854 Carbamoyl dehydratase HypE RAM_19280 70ab493990a6945c40d136e338aa6008 358 Pfam PF02769 AIR synthase related protein, C-terminal domain 184 330 1.0E-24 T 13-10-2018 IPR010918 PurM-like, C-terminal domain RAM_19280 70ab493990a6945c40d136e338aa6008 358 SUPERFAMILY SSF56042 180 353 1.29E-44 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily RAM_31280 cb30b983754c9cff330adbf45811db87 325 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 2.1E-17 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_31280 cb30b983754c9cff330adbf45811db87 325 SUPERFAMILY SSF47413 2 59 8.59E-18 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_31280 cb30b983754c9cff330adbf45811db87 325 SUPERFAMILY SSF53822 62 323 2.36E-67 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_31280 cb30b983754c9cff330adbf45811db87 325 SMART SM00354 1 71 1.6E-26 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_31280 cb30b983754c9cff330adbf45811db87 325 Gene3D G3DSA:3.40.50.2300 63 304 5.4E-76 T 13-10-2018 RAM_31280 cb30b983754c9cff330adbf45811db87 325 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 2.3E-5 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_31280 cb30b983754c9cff330adbf45811db87 325 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 2.3E-5 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_31280 cb30b983754c9cff330adbf45811db87 325 Gene3D G3DSA:1.10.260.40 1 59 8.2E-24 T 13-10-2018 RAM_31280 cb30b983754c9cff330adbf45811db87 325 Pfam PF13377 Periplasmic binding protein-like domain 167 323 1.3E-31 T 13-10-2018 RAM_31280 cb30b983754c9cff330adbf45811db87 325 Gene3D G3DSA:3.40.50.2300 157 284 5.4E-76 T 13-10-2018 RAM_31280 cb30b983754c9cff330adbf45811db87 325 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 13-10-2018 RAM_25605 a7760d050cac0b1362a33ba2d31fb935 556 ProSitePatterns PS00211 ABC transporters family signature. 460 474 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_25605 a7760d050cac0b1362a33ba2d31fb935 556 Pfam PF00664 ABC transporter transmembrane region 22 290 1.2E-28 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 RAM_25605 a7760d050cac0b1362a33ba2d31fb935 556 Gene3D G3DSA:3.40.50.300 333 555 1.4E-50 T 13-10-2018 RAM_25605 a7760d050cac0b1362a33ba2d31fb935 556 SUPERFAMILY SSF52540 341 549 6.64E-47 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_25605 a7760d050cac0b1362a33ba2d31fb935 556 Gene3D G3DSA:1.20.1560.10 3 319 7.4E-57 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RAM_25605 a7760d050cac0b1362a33ba2d31fb935 556 Pfam PF00005 ABC transporter 345 487 2.7E-13 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_25605 a7760d050cac0b1362a33ba2d31fb935 556 SUPERFAMILY SSF90123 10 315 8.89E-55 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RAM_04120 5329d549a100d1bbd724e903abfcea05 205 Gene3D G3DSA:3.40.50.170 3 205 3.4E-73 T 13-10-2018 RAM_04120 5329d549a100d1bbd724e903abfcea05 205 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 8 190 3.3E-64 T 13-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 RAM_04120 5329d549a100d1bbd724e903abfcea05 205 Pfam PF00551 Formyl transferase 8 185 4.5E-46 T 13-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RAM_04120 5329d549a100d1bbd724e903abfcea05 205 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 8 191 27.908 T 13-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 RAM_04120 5329d549a100d1bbd724e903abfcea05 205 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 137 160 - T 13-10-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RAM_04120 5329d549a100d1bbd724e903abfcea05 205 SUPERFAMILY SSF53328 8 202 2.49E-55 T 13-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RAM_26960 fd5a1acfa4a003f2ee6409a370b23676 145 SMART SM00347 29 128 3.7E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_26960 fd5a1acfa4a003f2ee6409a370b23676 145 Gene3D G3DSA:1.10.10.10 4 145 8.5E-32 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_26960 fd5a1acfa4a003f2ee6409a370b23676 145 SUPERFAMILY SSF46785 4 143 3.77E-25 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_26960 fd5a1acfa4a003f2ee6409a370b23676 145 Pfam PF12802 MarR family 35 91 2.9E-9 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_29540 f7863defda40930bf791dc095eb35357 339 Pfam PF17132 alpha-L-rhamnosidase 7 323 1.3E-62 T 13-10-2018 IPR033400 Alpha-L-rhamnosidase RhaM RAM_29540 f7863defda40930bf791dc095eb35357 339 Gene3D G3DSA:2.60.120.260 179 318 2.0E-7 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_29540 f7863defda40930bf791dc095eb35357 339 SUPERFAMILY SSF49785 205 292 1.11E-8 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_13185 e891169f3cfcb2e7bdf9d04753de641e 715 Gene3D G3DSA:3.20.20.80 149 586 3.2E-170 T 13-10-2018 RAM_13185 e891169f3cfcb2e7bdf9d04753de641e 715 Gene3D G3DSA:2.60.40.1180 595 706 1.6E-10 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta RAM_13185 e891169f3cfcb2e7bdf9d04753de641e 715 SUPERFAMILY SSF51445 152 579 6.53E-127 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_13185 e891169f3cfcb2e7bdf9d04753de641e 715 SUPERFAMILY SSF81296 13 110 1.26E-35 T 13-10-2018 IPR014756 Immunoglobulin E-set RAM_13185 e891169f3cfcb2e7bdf9d04753de641e 715 SUPERFAMILY SSF51011 592 703 1.15E-14 T 13-10-2018 RAM_13185 e891169f3cfcb2e7bdf9d04753de641e 715 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 17 103 2.5E-18 T 13-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 RAM_13185 e891169f3cfcb2e7bdf9d04753de641e 715 Pfam PF00128 Alpha amylase, catalytic domain 195 278 2.1E-6 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RAM_13185 e891169f3cfcb2e7bdf9d04753de641e 715 SMART SM00642 165 572 7.7E-7 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RAM_13185 e891169f3cfcb2e7bdf9d04753de641e 715 Gene3D G3DSA:2.60.40.10 3 143 3.4E-39 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_13185 e891169f3cfcb2e7bdf9d04753de641e 715 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 13 702 4.3E-260 T 13-10-2018 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 RAM_44605 98532b5a9b8938bd04b4de3482ae70c2 216 SMART SM01007 8 187 3.6E-60 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal RAM_44605 98532b5a9b8938bd04b4de3482ae70c2 216 Gene3D G3DSA:3.40.225.10 2 216 1.1E-67 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily RAM_44605 98532b5a9b8938bd04b4de3482ae70c2 216 SUPERFAMILY SSF53639 3 215 7.26E-63 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily RAM_44605 98532b5a9b8938bd04b4de3482ae70c2 216 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 9 187 1.2E-45 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal RAM_10725 3511b86bd0952cd8915b63b11e725025 196 SUPERFAMILY SSF46689 2 78 1.4E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_10725 3511b86bd0952cd8915b63b11e725025 196 Gene3D G3DSA:1.10.357.10 66 195 1.7E-24 T 13-10-2018 RAM_10725 3511b86bd0952cd8915b63b11e725025 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 1.8E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_10725 3511b86bd0952cd8915b63b11e725025 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 1.8E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_10725 3511b86bd0952cd8915b63b11e725025 196 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 58 2.0E-13 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_10725 3511b86bd0952cd8915b63b11e725025 196 Gene3D G3DSA:1.10.10.60 1 65 3.2E-24 T 13-10-2018 RAM_10725 3511b86bd0952cd8915b63b11e725025 196 SUPERFAMILY SSF48498 79 194 6.33E-23 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_42980 6591e12e65db91683fc26e41e0e5dbf9 332 Gene3D G3DSA:3.40.50.300 2 330 1.4E-89 T 13-10-2018 RAM_42980 6591e12e65db91683fc26e41e0e5dbf9 332 SMART SM00382 33 236 2.6E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_42980 6591e12e65db91683fc26e41e0e5dbf9 332 SUPERFAMILY SSF52540 4 256 9.18E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_42980 6591e12e65db91683fc26e41e0e5dbf9 332 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 238 302 2.1E-18 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RAM_42980 6591e12e65db91683fc26e41e0e5dbf9 332 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 236 322 7.3E-22 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RAM_42980 6591e12e65db91683fc26e41e0e5dbf9 332 Pfam PF00005 ABC transporter 25 186 1.4E-24 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_42980 6591e12e65db91683fc26e41e0e5dbf9 332 ProSitePatterns PS00211 ABC transporters family signature. 159 173 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_24665 67e8019e04b8bd6a986dfaa2b8c78c3c 661 SUPERFAMILY SSF52540 397 605 6.46E-34 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_24665 67e8019e04b8bd6a986dfaa2b8c78c3c 661 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 443 567 3.3E-23 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RAM_24665 67e8019e04b8bd6a986dfaa2b8c78c3c 661 Gene3D G3DSA:3.40.50.300 380 581 2.7E-37 T 13-10-2018 RAM_24665 67e8019e04b8bd6a986dfaa2b8c78c3c 661 SMART SM00382 438 570 9.0E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_03345 7cdbcb8c45416e9941dbd159d6d42465 417 Gene3D G3DSA:1.10.10.10 352 416 2.3E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_03345 7cdbcb8c45416e9941dbd159d6d42465 417 SMART SM00421 356 413 2.6E-16 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_03345 7cdbcb8c45416e9941dbd159d6d42465 417 Pfam PF00196 Bacterial regulatory proteins, luxR family 359 410 2.4E-15 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_03345 7cdbcb8c45416e9941dbd159d6d42465 417 SUPERFAMILY SSF46894 353 412 5.78E-15 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_03345 7cdbcb8c45416e9941dbd159d6d42465 417 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 373 389 2.9E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_03345 7cdbcb8c45416e9941dbd159d6d42465 417 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 389 401 2.9E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_03345 7cdbcb8c45416e9941dbd159d6d42465 417 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 359 373 2.9E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_47920 8533c60699b8db2b45a91d6edaae5317 478 SUPERFAMILY SSF81301 15 154 7.19E-37 T 13-10-2018 RAM_47920 8533c60699b8db2b45a91d6edaae5317 478 Pfam PF01966 HD domain 259 384 9.3E-15 T 13-10-2018 IPR006674 HD domain RAM_47920 8533c60699b8db2b45a91d6edaae5317 478 Gene3D G3DSA:3.30.460.10 15 156 6.6E-38 T 13-10-2018 RAM_47920 8533c60699b8db2b45a91d6edaae5317 478 Gene3D G3DSA:1.10.3090.10 157 460 1.8E-46 T 13-10-2018 RAM_47920 8533c60699b8db2b45a91d6edaae5317 478 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 185 244 4.6E-16 T 13-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 RAM_47920 8533c60699b8db2b45a91d6edaae5317 478 TIGRFAM TIGR00277 HDIG: HDIG domain 256 341 9.3E-18 T 13-10-2018 IPR006675 HDIG domain RAM_47920 8533c60699b8db2b45a91d6edaae5317 478 SUPERFAMILY SSF81891 156 470 2.09E-63 T 13-10-2018 RAM_47920 8533c60699b8db2b45a91d6edaae5317 478 SMART SM00471 255 415 1.1E-5 T 13-10-2018 IPR003607 HD/PDEase domain RAM_47920 8533c60699b8db2b45a91d6edaae5317 478 Pfam PF01743 Poly A polymerase head domain 33 156 3.6E-32 T 13-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 RAM_47920 8533c60699b8db2b45a91d6edaae5317 478 TIGRFAM TIGR02692 tRNA_CCA_actino: CCA tRNA nucleotidyltransferase 7 469 1.4E-238 T 13-10-2018 IPR014065 tRNA adenylyltransferase RAM_08815 8e2dd910ef416294369cb131d12a6e6d 174 Gene3D G3DSA:3.90.1010.20 121 173 1.3E-5 T 13-10-2018 RAM_08815 8e2dd910ef416294369cb131d12a6e6d 174 Pfam PF04205 FMN-binding domain 101 168 4.1E-7 T 13-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 RAM_08815 8e2dd910ef416294369cb131d12a6e6d 174 SMART SM00900 99 171 7.1E-7 T 13-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 RAM_38180 7f3fbfd49067752c54f674b4eb39bee9 114 Pfam PF13466 STAS domain 19 98 7.6E-18 T 13-10-2018 IPR002645 STAS domain RAM_38180 7f3fbfd49067752c54f674b4eb39bee9 114 TIGRFAM TIGR00377 ant_ant_sig: anti-anti-sigma factor 6 109 3.8E-18 T 13-10-2018 IPR003658 Anti-sigma factor antagonist GO:0006355|GO:0045152 RAM_38180 7f3fbfd49067752c54f674b4eb39bee9 114 SUPERFAMILY SSF52091 7 112 1.59E-23 T 13-10-2018 IPR036513 STAS domain superfamily RAM_38180 7f3fbfd49067752c54f674b4eb39bee9 114 Gene3D G3DSA:3.30.750.24 3 114 8.5E-31 T 13-10-2018 IPR036513 STAS domain superfamily RAM_21355 abafa59221df01b5acef26bb5a67266f 131 Gene3D G3DSA:3.30.750.24 15 124 6.6E-22 T 13-10-2018 IPR036513 STAS domain superfamily RAM_21355 abafa59221df01b5acef26bb5a67266f 131 SUPERFAMILY SSF52091 19 119 1.35E-17 T 13-10-2018 IPR036513 STAS domain superfamily RAM_21355 abafa59221df01b5acef26bb5a67266f 131 Pfam PF13466 STAS domain 28 104 1.8E-14 T 13-10-2018 IPR002645 STAS domain RAM_11275 e79dbf9eda7010a5d04155af488f3b0c 426 Pfam PF00202 Aminotransferase class-III 25 419 3.7E-114 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RAM_11275 e79dbf9eda7010a5d04155af488f3b0c 426 TIGRFAM TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase 14 422 1.1E-160 T 13-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 RAM_11275 e79dbf9eda7010a5d04155af488f3b0c 426 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 244 281 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RAM_11275 e79dbf9eda7010a5d04155af488f3b0c 426 Gene3D G3DSA:3.90.1150.10 10 414 5.4E-154 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_11275 e79dbf9eda7010a5d04155af488f3b0c 426 Gene3D G3DSA:3.40.640.10 62 332 5.4E-154 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_11275 e79dbf9eda7010a5d04155af488f3b0c 426 SUPERFAMILY SSF53383 5 423 1.88E-115 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_17325 95a189986b847c2f4b2a7cd4648bc42f 343 ProSitePatterns PS00356 LacI-type HTH domain signature. 19 37 - T 13-10-2018 RAM_17325 95a189986b847c2f4b2a7cd4648bc42f 343 Gene3D G3DSA:3.40.50.2300 74 159 3.3E-14 T 13-10-2018 RAM_17325 95a189986b847c2f4b2a7cd4648bc42f 343 SMART SM00354 16 86 7.7E-23 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_17325 95a189986b847c2f4b2a7cd4648bc42f 343 Gene3D G3DSA:3.40.50.2300 167 343 2.5E-47 T 13-10-2018 RAM_17325 95a189986b847c2f4b2a7cd4648bc42f 343 SUPERFAMILY SSF47413 15 74 1.03E-15 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_17325 95a189986b847c2f4b2a7cd4648bc42f 343 Pfam PF00356 Bacterial regulatory proteins, lacI family 18 63 3.7E-15 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_17325 95a189986b847c2f4b2a7cd4648bc42f 343 Gene3D G3DSA:1.10.260.40 11 73 1.6E-20 T 13-10-2018 RAM_17325 95a189986b847c2f4b2a7cd4648bc42f 343 Pfam PF13377 Periplasmic binding protein-like domain 182 342 1.5E-31 T 13-10-2018 RAM_17325 95a189986b847c2f4b2a7cd4648bc42f 343 SUPERFAMILY SSF53822 76 343 3.99E-57 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_19780 66468daba5a94f55eec8f12c8d7064dc 286 Gene3D G3DSA:3.40.50.1820 3 286 5.5E-48 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_19780 66468daba5a94f55eec8f12c8d7064dc 286 PRINTS PR00111 Alpha/beta hydrolase fold signature 233 247 2.2E-8 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_19780 66468daba5a94f55eec8f12c8d7064dc 286 PRINTS PR00111 Alpha/beta hydrolase fold signature 61 76 2.2E-8 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_19780 66468daba5a94f55eec8f12c8d7064dc 286 PRINTS PR00111 Alpha/beta hydrolase fold signature 120 133 2.2E-8 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_19780 66468daba5a94f55eec8f12c8d7064dc 286 PRINTS PR00111 Alpha/beta hydrolase fold signature 106 119 2.2E-8 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_19780 66468daba5a94f55eec8f12c8d7064dc 286 PRINTS PR00412 Epoxide hydrolase signature 263 285 5.3E-5 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_19780 66468daba5a94f55eec8f12c8d7064dc 286 PRINTS PR00412 Epoxide hydrolase signature 61 76 5.3E-5 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_19780 66468daba5a94f55eec8f12c8d7064dc 286 PRINTS PR00412 Epoxide hydrolase signature 120 133 5.3E-5 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_19780 66468daba5a94f55eec8f12c8d7064dc 286 SUPERFAMILY SSF53474 14 284 7.97E-50 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_19780 66468daba5a94f55eec8f12c8d7064dc 286 Pfam PF00561 alpha/beta hydrolase fold 37 135 2.3E-16 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_11310 070b948dc7d2ae8e4c1cf9ea2be4d4ff 346 Gene3D G3DSA:3.30.2010.10 69 153 6.4E-12 T 13-10-2018 RAM_11310 070b948dc7d2ae8e4c1cf9ea2be4d4ff 346 Pfam PF01435 Peptidase family M48 71 266 2.9E-20 T 13-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 RAM_36910 e172d0d5782cc65eafa08190719508e2 389 PIRSF PIRSF016578 1 386 1.3E-123 T 13-10-2018 RAM_36910 e172d0d5782cc65eafa08190719508e2 389 Gene3D G3DSA:1.20.140.10 205 389 3.0E-43 T 13-10-2018 RAM_36910 e172d0d5782cc65eafa08190719508e2 389 Gene3D G3DSA:2.40.110.10 104 203 2.5E-34 T 13-10-2018 RAM_36910 e172d0d5782cc65eafa08190719508e2 389 SUPERFAMILY SSF56645 7 202 2.23E-26 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_36910 e172d0d5782cc65eafa08190719508e2 389 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 233 364 8.2E-34 T 13-10-2018 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain RAM_36910 e172d0d5782cc65eafa08190719508e2 389 SUPERFAMILY SSF47203 228 376 1.14E-14 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_36910 e172d0d5782cc65eafa08190719508e2 389 Gene3D G3DSA:1.10.540.10 1 103 7.7E-29 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_41680 a22974b06f287e96dea657e04856791b 667 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 517 545 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_41680 a22974b06f287e96dea657e04856791b 667 Gene3D G3DSA:3.40.50.720 2 361 9.7E-67 T 13-10-2018 RAM_41680 a22974b06f287e96dea657e04856791b 667 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 530 549 1.3E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_41680 a22974b06f287e96dea657e04856791b 667 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 381 398 1.3E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_41680 a22974b06f287e96dea657e04856791b 667 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 504 520 1.3E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_41680 a22974b06f287e96dea657e04856791b 667 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 455 466 1.3E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_41680 a22974b06f287e96dea657e04856791b 667 Pfam PF07993 Male sterility protein 9 237 8.0E-45 T 13-10-2018 IPR013120 Male sterility, NAD-binding Reactome: R-HSA-8848584 RAM_41680 a22974b06f287e96dea657e04856791b 667 Gene3D G3DSA:3.40.50.720 362 622 5.0E-62 T 13-10-2018 RAM_41680 a22974b06f287e96dea657e04856791b 667 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 380 564 2.9E-5 T 13-10-2018 RAM_41680 a22974b06f287e96dea657e04856791b 667 Pfam PF00106 short chain dehydrogenase 381 569 9.6E-47 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_41680 a22974b06f287e96dea657e04856791b 667 SUPERFAMILY SSF51735 4 366 1.09E-43 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_41680 a22974b06f287e96dea657e04856791b 667 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 510 518 9.0E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_41680 a22974b06f287e96dea657e04856791b 667 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 530 549 9.0E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_41680 a22974b06f287e96dea657e04856791b 667 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 455 466 9.0E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_41680 a22974b06f287e96dea657e04856791b 667 SUPERFAMILY SSF51735 376 597 2.44E-61 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_00175 3146f303865808c204cabf11419ad0d0 171 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 125 140 4.6E-24 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 RAM_00175 3146f303865808c204cabf11419ad0d0 171 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 97 112 4.6E-24 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 RAM_00175 3146f303865808c204cabf11419ad0d0 171 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 57 69 4.6E-24 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 RAM_00175 3146f303865808c204cabf11419ad0d0 171 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 112 124 4.6E-24 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 RAM_00175 3146f303865808c204cabf11419ad0d0 171 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 4.6E-24 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 RAM_00175 3146f303865808c204cabf11419ad0d0 171 PIRSF PIRSF001467 1 170 8.8E-55 T 13-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 RAM_00175 3146f303865808c204cabf11419ad0d0 171 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 52 69 - T 13-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 RAM_00175 3146f303865808c204cabf11419ad0d0 171 SUPERFAMILY SSF50891 3 167 1.15E-60 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily RAM_00175 3146f303865808c204cabf11419ad0d0 171 Gene3D G3DSA:2.40.100.10 1 168 3.0E-73 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily RAM_00175 3146f303865808c204cabf11419ad0d0 171 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 4 166 4.0E-44 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 RAM_21200 e7ebf70cd5bd33b5bef4f59793242e5a 280 Pfam PF03551 Transcriptional regulator PadR-like family 136 203 8.3E-18 T 13-10-2018 IPR005149 Transcription regulator PadR, N-terminal RAM_21200 e7ebf70cd5bd33b5bef4f59793242e5a 280 SUPERFAMILY SSF46785 132 230 4.01E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_21200 e7ebf70cd5bd33b5bef4f59793242e5a 280 Gene3D G3DSA:1.10.10.10 129 220 4.2E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_42895 eed1e6bc616a0162906fac5fd567254c 256 Gene3D G3DSA:1.20.120.1760 58 220 1.9E-11 T 13-10-2018 RAM_42895 eed1e6bc616a0162906fac5fd567254c 256 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 102 124 - T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RAM_42895 eed1e6bc616a0162906fac5fd567254c 256 Pfam PF01066 CDP-alcohol phosphatidyltransferase 60 124 1.2E-10 T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RAM_15210 1729e255abc4b0a34309d62ca379d93e 183 Pfam PF04542 Sigma-70 region 2 29 93 3.3E-11 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_15210 1729e255abc4b0a34309d62ca379d93e 183 Gene3D G3DSA:1.10.1740.10 1 90 2.5E-31 T 13-10-2018 RAM_15210 1729e255abc4b0a34309d62ca379d93e 183 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 24 175 1.8E-22 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_15210 1729e255abc4b0a34309d62ca379d93e 183 SUPERFAMILY SSF88659 114 175 9.38E-15 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_15210 1729e255abc4b0a34309d62ca379d93e 183 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 49 80 - T 13-10-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_15210 1729e255abc4b0a34309d62ca379d93e 183 Gene3D G3DSA:1.10.10.10 115 179 3.2E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_15210 1729e255abc4b0a34309d62ca379d93e 183 SUPERFAMILY SSF88946 6 112 3.18E-21 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_15210 1729e255abc4b0a34309d62ca379d93e 183 Pfam PF08281 Sigma-70, region 4 121 173 3.7E-16 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_28630 59cac86ed520c3aa05335eb442076c62 262 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 15 197 7.6E-4 T 13-10-2018 RAM_28630 59cac86ed520c3aa05335eb442076c62 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 5.3E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_28630 59cac86ed520c3aa05335eb442076c62 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 16 33 5.3E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_28630 59cac86ed520c3aa05335eb442076c62 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 5.3E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_28630 59cac86ed520c3aa05335eb442076c62 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 5.3E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_28630 59cac86ed520c3aa05335eb442076c62 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 5.3E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_28630 59cac86ed520c3aa05335eb442076c62 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 222 242 5.3E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_28630 59cac86ed520c3aa05335eb442076c62 262 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_28630 59cac86ed520c3aa05335eb442076c62 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 1.6E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_28630 59cac86ed520c3aa05335eb442076c62 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 1.6E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_28630 59cac86ed520c3aa05335eb442076c62 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 1.6E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_28630 59cac86ed520c3aa05335eb442076c62 262 SUPERFAMILY SSF51735 14 258 1.45E-66 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_28630 59cac86ed520c3aa05335eb442076c62 262 Gene3D G3DSA:3.40.50.720 9 261 4.6E-71 T 13-10-2018 RAM_28630 59cac86ed520c3aa05335eb442076c62 262 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 23 258 1.3E-43 T 13-10-2018 RAM_33270 5af42a8eba48bd426421cbb2b3acc9e7 312 SMART SM00382 26 204 1.2E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_33270 5af42a8eba48bd426421cbb2b3acc9e7 312 SUPERFAMILY SSF52540 2 220 1.41E-53 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_33270 5af42a8eba48bd426421cbb2b3acc9e7 312 Pfam PF00005 ABC transporter 18 156 4.0E-25 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_33270 5af42a8eba48bd426421cbb2b3acc9e7 312 Gene3D G3DSA:3.40.50.300 1 228 1.9E-53 T 13-10-2018 RAM_20445 0d3306a800baa62b1af5262e48b5bd99 393 PRINTS PR00359 B-class P450 signature 80 91 1.5E-7 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_20445 0d3306a800baa62b1af5262e48b5bd99 393 PRINTS PR00359 B-class P450 signature 346 357 1.5E-7 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_20445 0d3306a800baa62b1af5262e48b5bd99 393 PRINTS PR00359 B-class P450 signature 337 346 1.5E-7 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_20445 0d3306a800baa62b1af5262e48b5bd99 393 PRINTS PR00359 B-class P450 signature 274 285 1.5E-7 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_20445 0d3306a800baa62b1af5262e48b5bd99 393 SUPERFAMILY SSF48264 16 364 1.96E-45 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_20445 0d3306a800baa62b1af5262e48b5bd99 393 PRINTS PR00385 P450 superfamily signature 346 357 2.0E-5 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_20445 0d3306a800baa62b1af5262e48b5bd99 393 PRINTS PR00385 P450 superfamily signature 337 346 2.0E-5 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_20445 0d3306a800baa62b1af5262e48b5bd99 393 PRINTS PR00385 P450 superfamily signature 235 252 2.0E-5 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_20445 0d3306a800baa62b1af5262e48b5bd99 393 PRINTS PR00385 P450 superfamily signature 274 285 2.0E-5 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_20445 0d3306a800baa62b1af5262e48b5bd99 393 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 339 348 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RAM_20445 0d3306a800baa62b1af5262e48b5bd99 393 Pfam PF00067 Cytochrome P450 272 363 5.5E-9 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_20445 0d3306a800baa62b1af5262e48b5bd99 393 Gene3D G3DSA:1.10.630.10 11 378 1.3E-45 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_20435 414b47d736a0dd84597c1c6524c16d19 336 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 112 196 1.5E-18 T 13-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 RAM_20435 414b47d736a0dd84597c1c6524c16d19 336 SUPERFAMILY SSF53901 3 333 2.07E-46 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_20435 414b47d736a0dd84597c1c6524c16d19 336 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 245 331 2.5E-18 T 13-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 RAM_20435 414b47d736a0dd84597c1c6524c16d19 336 Gene3D G3DSA:3.40.47.10 1 335 8.1E-89 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_12960 e269e31ec2380aa1643c3d07df33444c 385 Pfam PF00108 Thiolase, N-terminal domain 5 254 1.3E-56 T 13-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 RAM_12960 e269e31ec2380aa1643c3d07df33444c 385 PIRSF PIRSF000429 1 385 2.9E-112 T 13-10-2018 IPR002155 Thiolase GO:0016747 RAM_12960 e269e31ec2380aa1643c3d07df33444c 385 ProSitePatterns PS00099 Thiolases active site. 366 379 - T 13-10-2018 IPR020610 Thiolase, active site GO:0016747 RAM_12960 e269e31ec2380aa1643c3d07df33444c 385 Gene3D G3DSA:3.40.47.10 6 268 3.9E-127 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_12960 e269e31ec2380aa1643c3d07df33444c 385 SUPERFAMILY SSF53901 263 384 7.21E-39 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_12960 e269e31ec2380aa1643c3d07df33444c 385 SUPERFAMILY SSF53901 5 262 1.78E-59 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_12960 e269e31ec2380aa1643c3d07df33444c 385 Pfam PF02803 Thiolase, C-terminal domain 263 384 2.7E-40 T 13-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 RAM_12960 e269e31ec2380aa1643c3d07df33444c 385 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 383 4.3E-113 T 13-10-2018 IPR002155 Thiolase GO:0016747 RAM_12960 e269e31ec2380aa1643c3d07df33444c 385 Gene3D G3DSA:3.40.47.10 125 379 3.9E-127 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_12960 e269e31ec2380aa1643c3d07df33444c 385 ProSitePatterns PS00737 Thiolases signature 2. 331 347 - T 13-10-2018 IPR020613 Thiolase, conserved site GO:0016747 RAM_19640 67349015efe9fcaed77204ae320db203 254 Gene3D G3DSA:3.90.226.10 1 196 9.3E-65 T 13-10-2018 RAM_19640 67349015efe9fcaed77204ae320db203 254 SUPERFAMILY SSF52096 2 254 8.62E-76 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_19640 67349015efe9fcaed77204ae320db203 254 Gene3D G3DSA:1.10.12.10 197 254 9.8E-23 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal RAM_19640 67349015efe9fcaed77204ae320db203 254 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 95 115 - T 13-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 RAM_19640 67349015efe9fcaed77204ae320db203 254 Pfam PF00378 Enoyl-CoA hydratase/isomerase 12 253 1.1E-49 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RAM_06500 19ab9cff5bd0ae13aa65de43369c80a1 984 SUPERFAMILY SSF48452 770 965 3.41E-22 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_06500 19ab9cff5bd0ae13aa65de43369c80a1 984 SUPERFAMILY SSF52540 208 474 7.9E-30 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_06500 19ab9cff5bd0ae13aa65de43369c80a1 984 PRINTS PR00364 Disease resistance protein signature 407 421 2.8E-9 T 13-10-2018 RAM_06500 19ab9cff5bd0ae13aa65de43369c80a1 984 PRINTS PR00364 Disease resistance protein signature 245 260 2.8E-9 T 13-10-2018 RAM_06500 19ab9cff5bd0ae13aa65de43369c80a1 984 PRINTS PR00364 Disease resistance protein signature 324 338 2.8E-9 T 13-10-2018 RAM_06500 19ab9cff5bd0ae13aa65de43369c80a1 984 Pfam PF13424 Tetratricopeptide repeat 695 766 1.8E-7 T 13-10-2018 RAM_06500 19ab9cff5bd0ae13aa65de43369c80a1 984 Pfam PF13424 Tetratricopeptide repeat 815 884 1.1E-10 T 13-10-2018 RAM_06500 19ab9cff5bd0ae13aa65de43369c80a1 984 SUPERFAMILY SSF48452 626 779 1.14E-11 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_06500 19ab9cff5bd0ae13aa65de43369c80a1 984 Gene3D G3DSA:3.30.70.1230 1 130 8.5E-6 T 13-10-2018 IPR029787 Nucleotide cyclase RAM_06500 19ab9cff5bd0ae13aa65de43369c80a1 984 Gene3D G3DSA:3.40.50.300 204 369 1.6E-25 T 13-10-2018 RAM_06500 19ab9cff5bd0ae13aa65de43369c80a1 984 Pfam PF00931 NB-ARC domain 242 479 2.7E-11 T 13-10-2018 IPR002182 NB-ARC GO:0043531 Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-6798695|Reactome: R-HSA-6803207|Reactome: R-HSA-8953750 RAM_06500 19ab9cff5bd0ae13aa65de43369c80a1 984 Gene3D G3DSA:1.25.40.10 815 984 2.9E-24 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_06500 19ab9cff5bd0ae13aa65de43369c80a1 984 Gene3D G3DSA:1.25.40.10 632 814 5.4E-28 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_06500 19ab9cff5bd0ae13aa65de43369c80a1 984 SMART SM00028 855 888 12.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_06500 19ab9cff5bd0ae13aa65de43369c80a1 984 SMART SM00028 815 848 0.13 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_06500 19ab9cff5bd0ae13aa65de43369c80a1 984 SMART SM00028 933 966 42.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_06500 19ab9cff5bd0ae13aa65de43369c80a1 984 SMART SM00028 655 688 120.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_06500 19ab9cff5bd0ae13aa65de43369c80a1 984 SMART SM00028 735 768 96.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_06500 19ab9cff5bd0ae13aa65de43369c80a1 984 SMART SM00028 775 808 100.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_06500 19ab9cff5bd0ae13aa65de43369c80a1 984 SMART SM00028 695 728 100.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_18400 c1abaac1586f290daa2e0993d7d64fd5 428 Gene3D G3DSA:3.20.20.80 209 428 1.6E-54 T 13-10-2018 RAM_18400 c1abaac1586f290daa2e0993d7d64fd5 428 Pfam PF01471 Putative peptidoglycan binding domain 131 190 5.7E-10 T 13-10-2018 IPR002477 Peptidoglycan binding-like RAM_18400 c1abaac1586f290daa2e0993d7d64fd5 428 Pfam PF01471 Putative peptidoglycan binding domain 34 93 5.4E-11 T 13-10-2018 IPR002477 Peptidoglycan binding-like RAM_18400 c1abaac1586f290daa2e0993d7d64fd5 428 SUPERFAMILY SSF51445 210 427 4.7E-43 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_18400 c1abaac1586f290daa2e0993d7d64fd5 428 Pfam PF01183 Glycosyl hydrolases family 25 215 405 3.1E-35 T 13-10-2018 IPR002053 Glycoside hydrolase, family 25 GO:0003796|GO:0009253|GO:0016998 RAM_18400 c1abaac1586f290daa2e0993d7d64fd5 428 Gene3D G3DSA:1.10.101.10 118 203 2.4E-23 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 RAM_18400 c1abaac1586f290daa2e0993d7d64fd5 428 Gene3D G3DSA:1.10.101.10 20 102 7.0E-22 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 RAM_18400 c1abaac1586f290daa2e0993d7d64fd5 428 SUPERFAMILY SSF47090 121 191 3.14E-15 T 13-10-2018 IPR036365 PGBD-like superfamily RAM_18400 c1abaac1586f290daa2e0993d7d64fd5 428 SMART SM00641 211 320 2.2E-5 T 13-10-2018 IPR018077 Glycoside hydrolase, family 25 subgroup RAM_18400 c1abaac1586f290daa2e0993d7d64fd5 428 SUPERFAMILY SSF47090 24 97 6.54E-15 T 13-10-2018 IPR036365 PGBD-like superfamily RAM_44535 d953c54b23eb6c8ecf5cc398a19e97ee 163 Gene3D G3DSA:1.20.58.1290 61 162 2.3E-39 T 13-10-2018 RAM_44535 d953c54b23eb6c8ecf5cc398a19e97ee 163 Gene3D G3DSA:2.30.30.840 1 60 4.7E-26 T 13-10-2018 RAM_44535 d953c54b23eb6c8ecf5cc398a19e97ee 163 Pfam PF02559 CarD-like/TRCF domain 3 111 1.3E-18 T 13-10-2018 IPR003711 CarD-like/TRCF domain RAM_44535 d953c54b23eb6c8ecf5cc398a19e97ee 163 SUPERFAMILY SSF141259 3 66 3.4E-14 T 13-10-2018 IPR036101 CarD-like/TRCF domain superfamily RAM_44535 d953c54b23eb6c8ecf5cc398a19e97ee 163 SMART SM01058 2 112 2.0E-33 T 13-10-2018 IPR003711 CarD-like/TRCF domain RAM_03030 9cbc0c5cff143f5afb41801075665eb7 308 TIGRFAM TIGR03619 F420_Rv2161c: probable F420-dependent oxidoreductase, Rv2161c family 32 285 2.2E-60 T 13-10-2018 IPR019921 Luciferase-like, F420-dependent oxidoreductase, Rv2161c, predicted RAM_03030 9cbc0c5cff143f5afb41801075665eb7 308 Gene3D G3DSA:3.20.20.30 8 306 6.3E-62 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_03030 9cbc0c5cff143f5afb41801075665eb7 308 SUPERFAMILY SSF51679 11 269 8.24E-55 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_03030 9cbc0c5cff143f5afb41801075665eb7 308 Pfam PF00296 Luciferase-like monooxygenase 22 266 5.8E-41 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_46490 b4da1befa67ff4cb9da1948e157e1565 259 SMART SM00062 30 249 1.9E-52 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RAM_46490 b4da1befa67ff4cb9da1948e157e1565 259 SUPERFAMILY SSF53850 1 244 4.45E-59 T 13-10-2018 RAM_46490 b4da1befa67ff4cb9da1948e157e1565 259 Gene3D G3DSA:3.40.190.10 115 207 4.9E-58 T 13-10-2018 RAM_46490 b4da1befa67ff4cb9da1948e157e1565 259 Gene3D G3DSA:3.40.190.10 31 244 4.9E-58 T 13-10-2018 RAM_46490 b4da1befa67ff4cb9da1948e157e1565 259 SMART SM00079 30 241 0.0095 T 13-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 RAM_46490 b4da1befa67ff4cb9da1948e157e1565 259 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 31 244 8.6E-55 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RAM_19600 f6b701a52163286cbdd0288932031b84 380 SUPERFAMILY SSF56645 5 242 3.27E-80 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_19600 f6b701a52163286cbdd0288932031b84 380 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 230 378 9.1E-44 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_19600 f6b701a52163286cbdd0288932031b84 380 Gene3D G3DSA:2.40.110.10 122 235 1.3E-43 T 13-10-2018 RAM_19600 f6b701a52163286cbdd0288932031b84 380 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 8 119 4.2E-29 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_19600 f6b701a52163286cbdd0288932031b84 380 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 337 356 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RAM_19600 f6b701a52163286cbdd0288932031b84 380 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 123 218 1.6E-26 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RAM_19600 f6b701a52163286cbdd0288932031b84 380 SUPERFAMILY SSF47203 228 378 4.19E-50 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_19600 f6b701a52163286cbdd0288932031b84 380 Gene3D G3DSA:1.20.140.10 236 380 1.5E-48 T 13-10-2018 RAM_19600 f6b701a52163286cbdd0288932031b84 380 Gene3D G3DSA:1.10.540.10 1 121 1.8E-31 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_19600 f6b701a52163286cbdd0288932031b84 380 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 125 137 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RAM_03055 193058e646c23fcfcd8e5144c9f085d5 257 Gene3D G3DSA:3.40.50.1820 1 256 4.1E-42 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_03055 193058e646c23fcfcd8e5144c9f085d5 257 SUPERFAMILY SSF53474 3 252 3.71E-43 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_03055 193058e646c23fcfcd8e5144c9f085d5 257 Pfam PF00561 alpha/beta hydrolase fold 25 124 4.4E-22 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_18070 05434b8f156679e52c58fd3dff21fdfe 514 Gene3D G3DSA:3.40.50.10540 53 209 1.1E-10 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily RAM_18070 05434b8f156679e52c58fd3dff21fdfe 514 Gene3D G3DSA:3.40.50.10540 234 456 4.2E-50 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily RAM_18070 05434b8f156679e52c58fd3dff21fdfe 514 Gene3D G3DSA:3.30.1540.10 125 196 1.1E-10 T 13-10-2018 RAM_18070 05434b8f156679e52c58fd3dff21fdfe 514 SUPERFAMILY SSF89796 235 437 2.22E-47 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily RAM_18070 05434b8f156679e52c58fd3dff21fdfe 514 Pfam PF02515 CoA-transferase family III 237 448 8.2E-38 T 13-10-2018 IPR003673 CoA-transferase family III GO:0003824 RAM_18070 05434b8f156679e52c58fd3dff21fdfe 514 Pfam PF02515 CoA-transferase family III 61 210 5.2E-6 T 13-10-2018 IPR003673 CoA-transferase family III GO:0003824 RAM_18070 05434b8f156679e52c58fd3dff21fdfe 514 SUPERFAMILY SSF89796 51 229 6.41E-22 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily RAM_41295 87ddbcfad6f12436fd7793af531dd372 319 ProSitePatterns PS00211 ABC transporters family signature. 152 166 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_41295 87ddbcfad6f12436fd7793af531dd372 319 Gene3D G3DSA:3.40.50.300 21 302 2.6E-55 T 13-10-2018 RAM_41295 87ddbcfad6f12436fd7793af531dd372 319 SUPERFAMILY SSF52540 19 244 2.97E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_41295 87ddbcfad6f12436fd7793af531dd372 319 Pfam PF00005 ABC transporter 36 180 2.0E-25 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_41295 87ddbcfad6f12436fd7793af531dd372 319 SMART SM00382 44 227 1.4E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_46315 c8eb5c84b1ac6e6af194cd5ded62d954 302 SUPERFAMILY SSF55347 155 251 2.29E-10 T 13-10-2018 RAM_46315 c8eb5c84b1ac6e6af194cd5ded62d954 302 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 10 123 2.6E-18 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 RAM_46315 c8eb5c84b1ac6e6af194cd5ded62d954 302 SUPERFAMILY SSF51735 5 140 1.19E-31 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_46315 c8eb5c84b1ac6e6af194cd5ded62d954 302 Gene3D G3DSA:3.40.50.720 4 144 4.6E-32 T 13-10-2018 RAM_46315 c8eb5c84b1ac6e6af194cd5ded62d954 302 Gene3D G3DSA:3.30.360.10 146 302 1.9E-14 T 13-10-2018 RAM_46315 c8eb5c84b1ac6e6af194cd5ded62d954 302 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 165 204 1.0E-5 T 13-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 RAM_26535 319b1bc320aaacfa058f19556635d99a 121 Gene3D G3DSA:3.30.750.24 14 119 3.0E-21 T 13-10-2018 IPR036513 STAS domain superfamily RAM_26535 319b1bc320aaacfa058f19556635d99a 121 Pfam PF13466 STAS domain 26 106 6.6E-12 T 13-10-2018 IPR002645 STAS domain RAM_26535 319b1bc320aaacfa058f19556635d99a 121 SUPERFAMILY SSF52091 19 113 7.46E-15 T 13-10-2018 IPR036513 STAS domain superfamily RAM_04290 d1c57b964623c7859d8dd4dc9dbf1786 343 SUPERFAMILY SSF52374 13 338 1.13E-96 T 13-10-2018 RAM_04290 d1c57b964623c7859d8dd4dc9dbf1786 343 Gene3D G3DSA:1.10.240.10 196 306 1.6E-129 T 13-10-2018 RAM_04290 d1c57b964623c7859d8dd4dc9dbf1786 343 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 25 41 7.6E-29 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 RAM_04290 d1c57b964623c7859d8dd4dc9dbf1786 343 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 152 173 7.6E-29 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 RAM_04290 d1c57b964623c7859d8dd4dc9dbf1786 343 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 75 94 7.6E-29 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 RAM_04290 d1c57b964623c7859d8dd4dc9dbf1786 343 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 205 215 7.6E-29 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 RAM_04290 d1c57b964623c7859d8dd4dc9dbf1786 343 Gene3D G3DSA:3.40.50.620 14 337 1.6E-129 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAM_04290 d1c57b964623c7859d8dd4dc9dbf1786 343 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 20 30 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 RAM_04290 d1c57b964623c7859d8dd4dc9dbf1786 343 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 11 339 41.788 T 13-10-2018 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2|Reactome: R-HSA-379726 RAM_04290 d1c57b964623c7859d8dd4dc9dbf1786 343 Pfam PF00579 tRNA synthetases class I (W and Y) 9 291 4.0E-84 T 13-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 RAM_04290 d1c57b964623c7859d8dd4dc9dbf1786 343 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 11 338 2.5E-105 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 RAM_30010 a7041f503c8da3fcca4cfc1219ab3adc 737 SUPERFAMILY SSF48452 513 607 5.69E-10 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_30010 a7041f503c8da3fcca4cfc1219ab3adc 737 Pfam PF16918 Protein kinase G tetratricopeptide repeat 433 735 1.9E-66 T 13-10-2018 IPR031636 Protein kinase G, tetratricopeptide repeat containing domain KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 RAM_30010 a7041f503c8da3fcca4cfc1219ab3adc 737 SUPERFAMILY SSF56112 125 328 3.96E-41 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_30010 a7041f503c8da3fcca4cfc1219ab3adc 737 Pfam PF00069 Protein kinase domain 142 329 1.1E-26 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_30010 a7041f503c8da3fcca4cfc1219ab3adc 737 Gene3D G3DSA:3.30.200.20 87 221 4.7E-87 T 13-10-2018 RAM_30010 a7041f503c8da3fcca4cfc1219ab3adc 737 Pfam PF16919 Protein kinase G rubredoxin domain 64 132 2.5E-20 T 13-10-2018 IPR031634 Protein kinase G, rubredoxin domain KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 RAM_30010 a7041f503c8da3fcca4cfc1219ab3adc 737 SMART SM00220 134 380 3.6E-14 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_30010 a7041f503c8da3fcca4cfc1219ab3adc 737 Gene3D G3DSA:1.10.510.10 222 374 4.7E-87 T 13-10-2018 RAM_30010 a7041f503c8da3fcca4cfc1219ab3adc 737 Gene3D G3DSA:1.25.40.10 419 574 1.9E-93 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_30010 a7041f503c8da3fcca4cfc1219ab3adc 737 Gene3D G3DSA:1.25.40.10 422 732 1.9E-93 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_18085 8883ec324eac813f614ccf0395bba710 494 SMART SM00448 342 452 1.6E-23 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_18085 8883ec324eac813f614ccf0395bba710 494 Gene3D G3DSA:3.40.50.12740 347 485 6.7E-39 T 13-10-2018 RAM_18085 8883ec324eac813f614ccf0395bba710 494 SUPERFAMILY SSF55874 243 341 1.33E-7 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_18085 8883ec324eac813f614ccf0395bba710 494 Pfam PF07730 Histidine kinase 158 222 7.7E-18 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_18085 8883ec324eac813f614ccf0395bba710 494 Pfam PF00072 Response regulator receiver domain 343 452 1.2E-21 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_18085 8883ec324eac813f614ccf0395bba710 494 SUPERFAMILY SSF52172 343 471 8.82E-28 T 13-10-2018 IPR011006 CheY-like superfamily RAM_18085 8883ec324eac813f614ccf0395bba710 494 Gene3D G3DSA:3.30.565.10 237 346 7.3E-21 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_22415 58fd2b2dd65fc9390107aa7cc695d3f5 1266 SUPERFAMILY SSF49785 674 842 2.13E-8 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_22415 58fd2b2dd65fc9390107aa7cc695d3f5 1266 SMART SM00560 89 227 2.1E-13 T 13-10-2018 IPR006558 LamG-like jellyroll fold RAM_22415 58fd2b2dd65fc9390107aa7cc695d3f5 1266 SMART SM00560 296 433 4.6E-19 T 13-10-2018 IPR006558 LamG-like jellyroll fold RAM_22415 58fd2b2dd65fc9390107aa7cc695d3f5 1266 SMART SM00560 501 629 0.0054 T 13-10-2018 IPR006558 LamG-like jellyroll fold RAM_22415 58fd2b2dd65fc9390107aa7cc695d3f5 1266 Gene3D G3DSA:2.60.120.200 29 232 4.0E-35 T 13-10-2018 RAM_22415 58fd2b2dd65fc9390107aa7cc695d3f5 1266 Gene3D G3DSA:2.60.120.200 233 439 3.6E-38 T 13-10-2018 RAM_22415 58fd2b2dd65fc9390107aa7cc695d3f5 1266 SUPERFAMILY SSF51445 833 1156 1.65E-61 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_22415 58fd2b2dd65fc9390107aa7cc695d3f5 1266 SMART SM00813 1078 1257 8.3E-34 T 13-10-2018 IPR010720 Alpha-L-arabinofuranosidase, C-terminal GO:0046373|GO:0046556 KEGG: 00520+3.2.1.55 RAM_22415 58fd2b2dd65fc9390107aa7cc695d3f5 1266 SUPERFAMILY SSF49899 236 442 2.22E-35 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily RAM_22415 58fd2b2dd65fc9390107aa7cc695d3f5 1266 Gene3D G3DSA:3.20.20.80 838 1151 1.4E-74 T 13-10-2018 RAM_22415 58fd2b2dd65fc9390107aa7cc695d3f5 1266 Pfam PF06964 Alpha-L-arabinofuranosidase C-terminal domain 1078 1257 2.3E-32 T 13-10-2018 IPR010720 Alpha-L-arabinofuranosidase, C-terminal GO:0046373|GO:0046556 KEGG: 00520+3.2.1.55 RAM_22415 58fd2b2dd65fc9390107aa7cc695d3f5 1266 Gene3D G3DSA:2.60.40.1180 1152 1264 8.2E-12 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta RAM_22415 58fd2b2dd65fc9390107aa7cc695d3f5 1266 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 487 631 2.9E-13 T 13-10-2018 RAM_22415 58fd2b2dd65fc9390107aa7cc695d3f5 1266 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 279 436 5.5E-31 T 13-10-2018 RAM_22415 58fd2b2dd65fc9390107aa7cc695d3f5 1266 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 73 226 2.1E-26 T 13-10-2018 RAM_22415 58fd2b2dd65fc9390107aa7cc695d3f5 1266 Gene3D G3DSA:2.60.120.200 440 635 6.3E-30 T 13-10-2018 RAM_22415 58fd2b2dd65fc9390107aa7cc695d3f5 1266 Gene3D G3DSA:2.60.120.260 672 837 7.7E-10 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_22415 58fd2b2dd65fc9390107aa7cc695d3f5 1266 SUPERFAMILY SSF49899 23 232 3.66E-32 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily RAM_22415 58fd2b2dd65fc9390107aa7cc695d3f5 1266 SUPERFAMILY SSF49899 443 635 6.8E-26 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily RAM_05130 33f04b7074f5dfbbffca14456aee5857 301 Gene3D G3DSA:3.40.50.720 7 284 2.2E-92 T 13-10-2018 RAM_05130 33f04b7074f5dfbbffca14456aee5857 301 Gene3D G3DSA:3.90.25.10 170 290 2.2E-92 T 13-10-2018 RAM_05130 33f04b7074f5dfbbffca14456aee5857 301 Pfam PF04321 RmlD substrate binding domain 6 296 1.4E-101 T 13-10-2018 IPR029903 RmlD-like substrate binding domain Reactome: R-HSA-156581|Reactome: R-HSA-5689880 RAM_05130 33f04b7074f5dfbbffca14456aee5857 301 TIGRFAM TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase 6 295 7.4E-85 T 13-10-2018 IPR005913 dTDP-4-dehydrorhamnose reductase family Reactome: R-HSA-156581|Reactome: R-HSA-5689880 RAM_05130 33f04b7074f5dfbbffca14456aee5857 301 SUPERFAMILY SSF51735 6 295 1.78E-81 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_18660 c1a3e222a5003103e04a1aa0cf24a727 352 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 36 95 9.4E-8 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_18660 c1a3e222a5003103e04a1aa0cf24a727 352 SUPERFAMILY SSF51735 121 268 1.29E-36 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_18660 c1a3e222a5003103e04a1aa0cf24a727 352 Gene3D G3DSA:3.40.50.720 131 282 1.4E-78 T 13-10-2018 RAM_18660 c1a3e222a5003103e04a1aa0cf24a727 352 Pfam PF00107 Zinc-binding dehydrogenase 159 261 4.6E-21 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RAM_18660 c1a3e222a5003103e04a1aa0cf24a727 352 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 148 169 - T 13-10-2018 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 RAM_18660 c1a3e222a5003103e04a1aa0cf24a727 352 SUPERFAMILY SSF50129 19 147 2.28E-28 T 13-10-2018 IPR011032 GroES-like superfamily RAM_18660 c1a3e222a5003103e04a1aa0cf24a727 352 SMART SM00829 22 350 1.9E-14 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_18660 c1a3e222a5003103e04a1aa0cf24a727 352 Gene3D G3DSA:3.90.180.10 20 341 1.4E-78 T 13-10-2018 RAM_05115 2fa2bc1bb4c04b90876f148f92febc37 399 Gene3D G3DSA:1.10.260.150 47 352 9.1E-64 T 13-10-2018 RAM_05115 2fa2bc1bb4c04b90876f148f92febc37 399 Pfam PF03816 Cell envelope-related transcriptional attenuator domain 94 263 7.3E-41 T 13-10-2018 IPR004474 Cell envelope-related transcriptional attenuator domain RAM_05115 2fa2bc1bb4c04b90876f148f92febc37 399 TIGRFAM TIGR00350 lytR_cpsA_psr: cell envelope-related function transcriptional attenuator common domain 94 263 3.3E-34 T 13-10-2018 IPR004474 Cell envelope-related transcriptional attenuator domain RAM_39940 48049abcab41f7172d446c2dd2915c3e 475 Hamap MF_01347 ATP synthase subunit beta [atpB]. 8 472 53.696 T 13-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 RAM_39940 48049abcab41f7172d446c2dd2915c3e 475 Gene3D G3DSA:2.40.10.170 8 86 2.8E-26 T 13-10-2018 RAM_39940 48049abcab41f7172d446c2dd2915c3e 475 SMART SM00382 153 338 3.0E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_39940 48049abcab41f7172d446c2dd2915c3e 475 Gene3D G3DSA:1.10.1140.10 357 475 3.6E-50 T 13-10-2018 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RAM_39940 48049abcab41f7172d446c2dd2915c3e 475 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 141 354 1.7E-63 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RAM_39940 48049abcab41f7172d446c2dd2915c3e 475 SUPERFAMILY SSF47917 357 472 8.37E-48 T 13-10-2018 RAM_39940 48049abcab41f7172d446c2dd2915c3e 475 Gene3D G3DSA:3.40.50.300 87 356 9.5E-101 T 13-10-2018 RAM_39940 48049abcab41f7172d446c2dd2915c3e 475 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 13 84 2.7E-19 T 13-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RAM_39940 48049abcab41f7172d446c2dd2915c3e 475 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 345 354 - T 13-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RAM_39940 48049abcab41f7172d446c2dd2915c3e 475 SUPERFAMILY SSF52540 88 360 5.67E-84 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_39940 48049abcab41f7172d446c2dd2915c3e 475 SUPERFAMILY SSF50615 10 86 1.52E-22 T 13-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RAM_39940 48049abcab41f7172d446c2dd2915c3e 475 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 10 471 1.1E-239 T 13-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 RAM_38790 fc357a44de311d11f55afb165f966868 280 Gene3D G3DSA:3.30.70.260 1 81 3.6E-24 T 13-10-2018 RAM_38790 fc357a44de311d11f55afb165f966868 280 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 4 279 2.1E-97 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 RAM_38790 fc357a44de311d11f55afb165f966868 280 Gene3D G3DSA:3.40.50.170 84 279 5.3E-72 T 13-10-2018 RAM_38790 fc357a44de311d11f55afb165f966868 280 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 107 134 1.6E-51 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 RAM_38790 fc357a44de311d11f55afb165f966868 280 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 85 107 1.6E-51 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 RAM_38790 fc357a44de311d11f55afb165f966868 280 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 231 253 1.6E-51 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 RAM_38790 fc357a44de311d11f55afb165f966868 280 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 5 31 1.6E-51 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 RAM_38790 fc357a44de311d11f55afb165f966868 280 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 253 278 1.6E-51 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 RAM_38790 fc357a44de311d11f55afb165f966868 280 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 37 49 1.6E-51 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 RAM_38790 fc357a44de311d11f55afb165f966868 280 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 1 279 43.896 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 RAM_38790 fc357a44de311d11f55afb165f966868 280 SUPERFAMILY SSF53328 85 280 4.19E-64 T 13-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RAM_38790 fc357a44de311d11f55afb165f966868 280 PIRSF PIRSF036480 1 280 9.2E-107 T 13-10-2018 RAM_38790 fc357a44de311d11f55afb165f966868 280 SUPERFAMILY SSF55021 2 78 9.58E-14 T 13-10-2018 RAM_38790 fc357a44de311d11f55afb165f966868 280 Pfam PF00551 Formyl transferase 85 261 1.3E-39 T 13-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RAM_06345 e7885dfcda87e075b6fd2951ef96daf3 357 Gene3D G3DSA:3.30.70.1660 120 346 2.4E-88 T 13-10-2018 RAM_06345 e7885dfcda87e075b6fd2951ef96daf3 357 TIGRFAM TIGR00020 prfB: peptide chain release factor 2 2 353 8.8E-154 T 13-10-2018 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 RAM_06345 e7885dfcda87e075b6fd2951ef96daf3 357 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 235 251 - T 13-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 RAM_06345 e7885dfcda87e075b6fd2951ef96daf3 357 Pfam PF00472 RF-1 domain 219 326 1.9E-36 T 13-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 RAM_06345 e7885dfcda87e075b6fd2951ef96daf3 357 SUPERFAMILY SSF75620 20 355 1.7E-121 T 13-10-2018 RAM_06345 e7885dfcda87e075b6fd2951ef96daf3 357 SMART SM00937 75 185 1.5E-47 T 13-10-2018 IPR005139 Peptide chain release factor GO:0006415 RAM_06345 e7885dfcda87e075b6fd2951ef96daf3 357 Hamap MF_00094 Peptide chain release factor 2 [prfB]. 1 354 36.309 T 13-10-2018 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 RAM_06345 e7885dfcda87e075b6fd2951ef96daf3 357 Pfam PF03462 PCRF domain 21 210 2.9E-55 T 13-10-2018 IPR005139 Peptide chain release factor GO:0006415 RAM_06345 e7885dfcda87e075b6fd2951ef96daf3 357 Gene3D G3DSA:1.20.58.410 1 106 2.6E-28 T 13-10-2018 RAM_06345 e7885dfcda87e075b6fd2951ef96daf3 357 Gene3D G3DSA:3.30.160.20 216 309 2.4E-88 T 13-10-2018 RAM_14590 d66b36d411c369e2da28d45970829136 418 Gene3D G3DSA:3.40.50.150 149 417 5.1E-92 T 13-10-2018 RAM_14590 d66b36d411c369e2da28d45970829136 418 PIRSF PIRSF003085 31 418 1.7E-112 T 13-10-2018 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 RAM_14590 d66b36d411c369e2da28d45970829136 418 Pfam PF02353 Mycolic acid cyclopropane synthetase 145 411 7.9E-83 T 13-10-2018 RAM_14590 d66b36d411c369e2da28d45970829136 418 SUPERFAMILY SSF53335 151 411 6.29E-65 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_34890 290d8bb8bc4d3d6f297930b17f8542c1 207 SUPERFAMILY SSF51735 4 190 3.17E-29 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_34890 290d8bb8bc4d3d6f297930b17f8542c1 207 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 4 93 3.2E-10 T 13-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal RAM_34890 290d8bb8bc4d3d6f297930b17f8542c1 207 Gene3D G3DSA:3.40.50.720 3 199 3.2E-41 T 13-10-2018 RAM_27210 aca4d3f37aed493ea9e3b8e0fcbee2f2 532 Pfam PF13193 AMP-binding enzyme C-terminal domain 439 517 5.3E-25 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_27210 aca4d3f37aed493ea9e3b8e0fcbee2f2 532 Pfam PF00501 AMP-binding enzyme 29 430 1.9E-73 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_27210 aca4d3f37aed493ea9e3b8e0fcbee2f2 532 Gene3D G3DSA:3.30.300.30 427 532 2.4E-30 T 13-10-2018 RAM_27210 aca4d3f37aed493ea9e3b8e0fcbee2f2 532 SUPERFAMILY SSF56801 29 529 1.57E-130 T 13-10-2018 RAM_27210 aca4d3f37aed493ea9e3b8e0fcbee2f2 532 Gene3D G3DSA:3.40.50.12780 19 426 1.0E-89 T 13-10-2018 RAM_36705 ffd9ea1e959afcc8cf2817f3336deb48 231 Gene3D G3DSA:1.10.357.10 61 198 3.5E-29 T 13-10-2018 RAM_36705 ffd9ea1e959afcc8cf2817f3336deb48 231 SUPERFAMILY SSF46689 8 86 9.23E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_36705 ffd9ea1e959afcc8cf2817f3336deb48 231 Gene3D G3DSA:1.10.10.60 6 60 4.4E-15 T 13-10-2018 RAM_36705 ffd9ea1e959afcc8cf2817f3336deb48 231 SUPERFAMILY SSF48498 85 197 3.51E-16 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_36705 ffd9ea1e959afcc8cf2817f3336deb48 231 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 1.5E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_36705 ffd9ea1e959afcc8cf2817f3336deb48 231 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 1.5E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_36705 ffd9ea1e959afcc8cf2817f3336deb48 231 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 64 3.0E-14 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_03925 ba61a4538ccfe140bd210220136e61f8 124 Pfam PF04545 Sigma-70, region 4 67 116 1.2E-11 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 RAM_03925 ba61a4538ccfe140bd210220136e61f8 124 Gene3D G3DSA:1.10.10.10 60 122 6.2E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_03925 ba61a4538ccfe140bd210220136e61f8 124 SUPERFAMILY SSF88659 46 119 2.62E-16 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_03925 ba61a4538ccfe140bd210220136e61f8 124 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 3 118 1.6E-17 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_46380 96c23d50d59d69fa3b4129618fe9857b 289 Pfam PF01183 Glycosyl hydrolases family 25 92 270 2.4E-45 T 13-10-2018 IPR002053 Glycoside hydrolase, family 25 GO:0003796|GO:0009253|GO:0016998 RAM_46380 96c23d50d59d69fa3b4129618fe9857b 289 SUPERFAMILY SSF51445 88 288 3.21E-58 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_46380 96c23d50d59d69fa3b4129618fe9857b 289 Gene3D G3DSA:3.20.20.80 86 289 6.7E-73 T 13-10-2018 RAM_46380 96c23d50d59d69fa3b4129618fe9857b 289 SMART SM00641 89 198 2.7E-43 T 13-10-2018 IPR018077 Glycoside hydrolase, family 25 subgroup RAM_47420 b7fe398a98f82a664bb412c7b2ddec7e 90 SUPERFAMILY SSF47413 10 77 5.32E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_47420 b7fe398a98f82a664bb412c7b2ddec7e 90 SMART SM00530 20 74 3.1E-8 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_47420 b7fe398a98f82a664bb412c7b2ddec7e 90 Gene3D G3DSA:1.10.260.40 7 76 1.6E-31 T 13-10-2018 RAM_47420 b7fe398a98f82a664bb412c7b2ddec7e 90 Pfam PF13560 Helix-turn-helix domain 16 76 3.9E-13 T 13-10-2018 RAM_12510 0271fb9290250d84ea6d0a9954bd2d0d 341 TIGRFAM TIGR02483 PFK_mixed: phosphofructokinase 2 321 1.8E-153 T 13-10-2018 IPR012829 Phosphofructokinase, mixed-substrate PFK group III GO:0006096|GO:0047334 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 RAM_12510 0271fb9290250d84ea6d0a9954bd2d0d 341 SUPERFAMILY SSF53784 1 333 2.09E-119 T 13-10-2018 IPR035966 Phosphofructokinase superfamily GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 RAM_12510 0271fb9290250d84ea6d0a9954bd2d0d 341 Gene3D G3DSA:3.40.50.450 3 322 6.3E-110 T 13-10-2018 RAM_12510 0271fb9290250d84ea6d0a9954bd2d0d 341 Hamap MF_01976 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase [pfp]. 1 341 43.848 T 13-10-2018 IPR012829 Phosphofructokinase, mixed-substrate PFK group III GO:0006096|GO:0047334 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 RAM_12510 0271fb9290250d84ea6d0a9954bd2d0d 341 Pfam PF00365 Phosphofructokinase 2 296 2.5E-101 T 13-10-2018 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 RAM_12510 0271fb9290250d84ea6d0a9954bd2d0d 341 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 31 44 2.6E-71 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 RAM_12510 0271fb9290250d84ea6d0a9954bd2d0d 341 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 5 24 2.6E-71 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 RAM_12510 0271fb9290250d84ea6d0a9954bd2d0d 341 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 138 156 2.6E-71 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 RAM_12510 0271fb9290250d84ea6d0a9954bd2d0d 341 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 93 109 2.6E-71 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 RAM_12510 0271fb9290250d84ea6d0a9954bd2d0d 341 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 261 283 2.6E-71 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 RAM_12510 0271fb9290250d84ea6d0a9954bd2d0d 341 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 120 137 2.6E-71 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 RAM_12510 0271fb9290250d84ea6d0a9954bd2d0d 341 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 211 223 2.6E-71 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 RAM_12510 0271fb9290250d84ea6d0a9954bd2d0d 341 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 158 174 2.6E-71 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 RAM_12510 0271fb9290250d84ea6d0a9954bd2d0d 341 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 176 193 2.6E-71 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 RAM_12510 0271fb9290250d84ea6d0a9954bd2d0d 341 PIRSF PIRSF000532 1 339 1.5E-118 T 13-10-2018 IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type GO:0005524|GO:0006002|GO:0006096|GO:0008443 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 RAM_12510 0271fb9290250d84ea6d0a9954bd2d0d 341 Gene3D G3DSA:3.40.50.460 140 277 6.3E-110 T 13-10-2018 RAM_12510 0271fb9290250d84ea6d0a9954bd2d0d 341 ProSitePatterns PS00433 Phosphofructokinase signature. 265 283 - T 13-10-2018 IPR015912 Phosphofructokinase, conserved site GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 RAM_14685 7b1484adca3ad7773d54425ba478b674 388 Gene3D G3DSA:2.40.110.10 124 236 3.7E-27 T 13-10-2018 RAM_14685 7b1484adca3ad7773d54425ba478b674 388 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 125 203 5.9E-17 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RAM_14685 7b1484adca3ad7773d54425ba478b674 388 SUPERFAMILY SSF47203 229 386 1.93E-39 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_14685 7b1484adca3ad7773d54425ba478b674 388 Gene3D G3DSA:1.20.140.10 237 382 2.7E-34 T 13-10-2018 RAM_14685 7b1484adca3ad7773d54425ba478b674 388 Gene3D G3DSA:1.10.540.10 1 121 3.6E-29 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_14685 7b1484adca3ad7773d54425ba478b674 388 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 10 119 4.5E-26 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_14685 7b1484adca3ad7773d54425ba478b674 388 SUPERFAMILY SSF56645 4 244 4.19E-61 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_14685 7b1484adca3ad7773d54425ba478b674 388 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 239 379 1.8E-31 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_40210 1fd4c214c8be37fb08ebcfef4b3ef6a5 526 PRINTS PR00740 Glycosyl hydrolase family 27 signature 34 53 8.6E-50 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_40210 1fd4c214c8be37fb08ebcfef4b3ef6a5 526 PRINTS PR00740 Glycosyl hydrolase family 27 signature 145 162 8.6E-50 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_40210 1fd4c214c8be37fb08ebcfef4b3ef6a5 526 PRINTS PR00740 Glycosyl hydrolase family 27 signature 258 279 8.6E-50 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_40210 1fd4c214c8be37fb08ebcfef4b3ef6a5 526 PRINTS PR00740 Glycosyl hydrolase family 27 signature 173 191 8.6E-50 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_40210 1fd4c214c8be37fb08ebcfef4b3ef6a5 526 PRINTS PR00740 Glycosyl hydrolase family 27 signature 70 85 8.6E-50 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_40210 1fd4c214c8be37fb08ebcfef4b3ef6a5 526 PRINTS PR00740 Glycosyl hydrolase family 27 signature 111 132 8.6E-50 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_40210 1fd4c214c8be37fb08ebcfef4b3ef6a5 526 Pfam PF00652 Ricin-type beta-trefoil lectin domain 400 523 2.5E-30 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_40210 1fd4c214c8be37fb08ebcfef4b3ef6a5 526 SUPERFAMILY SSF51445 31 302 1.86E-94 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_40210 1fd4c214c8be37fb08ebcfef4b3ef6a5 526 Gene3D G3DSA:3.20.20.70 32 303 2.1E-121 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_40210 1fd4c214c8be37fb08ebcfef4b3ef6a5 526 SUPERFAMILY SSF50370 397 523 1.57E-41 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_40210 1fd4c214c8be37fb08ebcfef4b3ef6a5 526 SMART SM00458 397 526 1.3E-31 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_40210 1fd4c214c8be37fb08ebcfef4b3ef6a5 526 Pfam PF16499 Alpha galactosidase A 39 302 2.5E-76 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_40210 1fd4c214c8be37fb08ebcfef4b3ef6a5 526 Gene3D G3DSA:2.60.40.1180 305 391 1.6E-27 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta RAM_40210 1fd4c214c8be37fb08ebcfef4b3ef6a5 526 Pfam PF17450 Alpha galactosidase A C-terminal beta sandwich domain 305 368 1.4E-8 T 13-10-2018 IPR035373 Alpha galactosidase A, C-terminal beta-sandwich domain RAM_40210 1fd4c214c8be37fb08ebcfef4b3ef6a5 526 SUPERFAMILY SSF51011 297 390 6.68E-25 T 13-10-2018 RAM_40210 1fd4c214c8be37fb08ebcfef4b3ef6a5 526 Gene3D G3DSA:2.80.10.50 397 524 8.7E-42 T 13-10-2018 RAM_40210 1fd4c214c8be37fb08ebcfef4b3ef6a5 526 ProSitePatterns PS00512 Alpha-galactosidase signature. 75 91 - T 13-10-2018 IPR000111 Glycoside hydrolase family 27/36, conserved site GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_21860 e2e4d3cfeead5859e86a9abe93208a34 500 SUPERFAMILY SSF50022 418 497 6.68E-25 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RAM_21860 e2e4d3cfeead5859e86a9abe93208a34 500 Pfam PF00355 Rieske [2Fe-2S] domain 420 496 3.3E-14 T 13-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RAM_21860 e2e4d3cfeead5859e86a9abe93208a34 500 SUPERFAMILY SSF51905 29 387 3.11E-33 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_21860 e2e4d3cfeead5859e86a9abe93208a34 500 Pfam PF01266 FAD dependent oxidoreductase 30 370 9.0E-40 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RAM_21860 e2e4d3cfeead5859e86a9abe93208a34 500 Gene3D G3DSA:3.50.50.60 30 371 1.2E-44 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_21860 e2e4d3cfeead5859e86a9abe93208a34 500 Gene3D G3DSA:3.30.9.10 123 329 1.2E-44 T 13-10-2018 RAM_21860 e2e4d3cfeead5859e86a9abe93208a34 500 Gene3D G3DSA:2.102.10.10 399 500 4.2E-24 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RAM_21860 e2e4d3cfeead5859e86a9abe93208a34 500 PRINTS PR00162 Rieske 2Fe-2S subunit signature 471 483 2.3E-8 T 13-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 RAM_21860 e2e4d3cfeead5859e86a9abe93208a34 500 PRINTS PR00162 Rieske 2Fe-2S subunit signature 483 495 2.3E-8 T 13-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 RAM_21860 e2e4d3cfeead5859e86a9abe93208a34 500 PRINTS PR00162 Rieske 2Fe-2S subunit signature 450 461 2.3E-8 T 13-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 RAM_30960 90b77aa37c142d6d4526003e7fe7ac7b 108 SUPERFAMILY SSF69864 16 100 3.92E-9 T 13-10-2018 RAM_30960 90b77aa37c142d6d4526003e7fe7ac7b 108 Pfam PF00764 Arginosuccinate synthase 16 58 2.6E-6 T 13-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 RAM_30960 90b77aa37c142d6d4526003e7fe7ac7b 108 Gene3D G3DSA:3.90.1260.10 6 67 6.6E-7 T 13-10-2018 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 RAM_32850 35df25387546a3f9ea59a53260d7b0c1 290 Gene3D G3DSA:3.10.450.50 160 285 1.8E-9 T 13-10-2018 RAM_32850 35df25387546a3f9ea59a53260d7b0c1 290 Gene3D G3DSA:1.10.10.10 85 158 1.2E-12 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_32850 35df25387546a3f9ea59a53260d7b0c1 290 SUPERFAMILY SSF88946 3 83 3.49E-13 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_32850 35df25387546a3f9ea59a53260d7b0c1 290 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 4 152 2.9E-19 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_32850 35df25387546a3f9ea59a53260d7b0c1 290 TIGRFAM TIGR02957 SigX4: RNA polymerase sigma-70 factor, TIGR02957 family 3 281 3.7E-111 T 13-10-2018 IPR014303 RNA polymerase sigma-70, ECF type RAM_32850 35df25387546a3f9ea59a53260d7b0c1 290 Gene3D G3DSA:1.10.1740.10 1 72 2.5E-9 T 13-10-2018 RAM_32850 35df25387546a3f9ea59a53260d7b0c1 290 SUPERFAMILY SSF54427 166 281 9.46E-18 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_32850 35df25387546a3f9ea59a53260d7b0c1 290 Pfam PF08281 Sigma-70, region 4 101 152 9.0E-12 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_32850 35df25387546a3f9ea59a53260d7b0c1 290 SUPERFAMILY SSF88659 72 157 1.5E-12 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_32850 35df25387546a3f9ea59a53260d7b0c1 290 Pfam PF04542 Sigma-70 region 2 6 69 4.2E-14 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_44760 5d7e0ac6192bbdfac208576544e84132 213 PIRSF PIRSF015592 1 211 1.8E-75 T 13-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 RAM_44760 5d7e0ac6192bbdfac208576544e84132 213 ProSitePatterns PS01334 Pyrrolidone-carboxylate peptidase cysteine active site. 127 141 - T 13-10-2018 IPR033694 Pyroglutamyl peptidase I, Cys active site MetaCyc: PWY-7942 RAM_44760 5d7e0ac6192bbdfac208576544e84132 213 TIGRFAM TIGR00504 pyro_pdase: pyroglutamyl-peptidase I 3 205 1.9E-76 T 13-10-2018 IPR029762 Pyroglutamyl peptidase I, bacterial-type GO:0005829|GO:0006508|GO:0008234|GO:0016920 MetaCyc: PWY-7942 RAM_44760 5d7e0ac6192bbdfac208576544e84132 213 SUPERFAMILY SSF53182 1 210 1.57E-64 T 13-10-2018 IPR036440 Peptidase C15, pyroglutamyl peptidase I-like superfamily MetaCyc: PWY-7942 RAM_44760 5d7e0ac6192bbdfac208576544e84132 213 Gene3D G3DSA:3.40.630.20 1 212 2.2E-74 T 13-10-2018 IPR036440 Peptidase C15, pyroglutamyl peptidase I-like superfamily MetaCyc: PWY-7942 RAM_44760 5d7e0ac6192bbdfac208576544e84132 213 Pfam PF01470 Pyroglutamyl peptidase 3 199 4.4E-70 T 13-10-2018 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like MetaCyc: PWY-7942 RAM_44760 5d7e0ac6192bbdfac208576544e84132 213 Hamap MF_00417 Pyrrolidone-carboxylate peptidase [pcp]. 2 199 37.341 T 13-10-2018 IPR029762 Pyroglutamyl peptidase I, bacterial-type GO:0005829|GO:0006508|GO:0008234|GO:0016920 MetaCyc: PWY-7942 RAM_44760 5d7e0ac6192bbdfac208576544e84132 213 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 59 71 8.9E-44 T 13-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 RAM_44760 5d7e0ac6192bbdfac208576544e84132 213 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 77 97 8.9E-44 T 13-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 RAM_44760 5d7e0ac6192bbdfac208576544e84132 213 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 4 27 8.9E-44 T 13-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 RAM_44760 5d7e0ac6192bbdfac208576544e84132 213 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 129 145 8.9E-44 T 13-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 RAM_44760 5d7e0ac6192bbdfac208576544e84132 213 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 159 171 8.9E-44 T 13-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 RAM_44760 5d7e0ac6192bbdfac208576544e84132 213 ProSitePatterns PS01333 Pyrrolidone-carboxylate peptidase glutamic acid active site. 66 82 - T 13-10-2018 IPR033693 Pyroglutamyl peptidase I, Glu active site MetaCyc: PWY-7942 RAM_16220 b82c701c82e206dc2ffdb7c790d2576d 669 Pfam PF10022 Uncharacterized protein conserved in bacteria (DUF2264) 17 363 8.6E-100 T 13-10-2018 IPR016624 Uncharacterised conserved protein UCP014753 RAM_37575 56829443d52356b76868472a6bca6a77 435 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 278 344 8.0E-6 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RAM_37575 56829443d52356b76868472a6bca6a77 435 Gene3D G3DSA:3.10.180.10 250 403 6.8E-30 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_37575 56829443d52356b76868472a6bca6a77 435 SUPERFAMILY SSF54593 289 392 4.67E-11 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_13345 58ec251fe5e50ff6963374be0f20f68a 374 SUPERFAMILY SSF55874 211 373 1.72E-29 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_13345 58ec251fe5e50ff6963374be0f20f68a 374 Pfam PF00512 His Kinase A (phospho-acceptor) domain 155 220 1.1E-12 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_13345 58ec251fe5e50ff6963374be0f20f68a 374 SUPERFAMILY SSF47384 137 219 4.51E-17 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RAM_13345 58ec251fe5e50ff6963374be0f20f68a 374 Gene3D G3DSA:3.30.565.10 225 374 2.3E-29 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_13345 58ec251fe5e50ff6963374be0f20f68a 374 Pfam PF00672 HAMP domain 101 150 1.1E-8 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_13345 58ec251fe5e50ff6963374be0f20f68a 374 SUPERFAMILY SSF158472 101 150 4.58E-7 T 13-10-2018 RAM_13345 58ec251fe5e50ff6963374be0f20f68a 374 PRINTS PR00344 Bacterial sensor protein C-terminal signature 335 353 6.4E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_13345 58ec251fe5e50ff6963374be0f20f68a 374 PRINTS PR00344 Bacterial sensor protein C-terminal signature 212 226 6.4E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_13345 58ec251fe5e50ff6963374be0f20f68a 374 PRINTS PR00344 Bacterial sensor protein C-terminal signature 319 329 6.4E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_13345 58ec251fe5e50ff6963374be0f20f68a 374 PRINTS PR00344 Bacterial sensor protein C-terminal signature 359 372 6.4E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_13345 58ec251fe5e50ff6963374be0f20f68a 374 Gene3D G3DSA:1.10.287.130 104 221 8.3E-27 T 13-10-2018 RAM_13345 58ec251fe5e50ff6963374be0f20f68a 374 SMART SM00388 154 221 6.9E-16 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_13345 58ec251fe5e50ff6963374be0f20f68a 374 SMART SM00387 264 374 2.5E-21 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_13345 58ec251fe5e50ff6963374be0f20f68a 374 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 264 373 1.7E-13 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_13345 58ec251fe5e50ff6963374be0f20f68a 374 SMART SM00304 100 153 3.2E-7 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_27170 e2b0619213f2ab1c779e6bf1b271256e 254 Gene3D G3DSA:1.20.58.760 79 247 4.8E-53 T 13-10-2018 RAM_27170 e2b0619213f2ab1c779e6bf1b271256e 254 Gene3D G3DSA:1.10.8.60 5 78 6.7E-24 T 13-10-2018 RAM_27170 e2b0619213f2ab1c779e6bf1b271256e 254 SUPERFAMILY SSF140990 88 236 1.15E-45 T 13-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 RAM_27170 e2b0619213f2ab1c779e6bf1b271256e 254 Pfam PF01434 Peptidase family M41 67 238 9.4E-53 T 13-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 RAM_27170 e2b0619213f2ab1c779e6bf1b271256e 254 SUPERFAMILY SSF52540 2 98 2.66E-10 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_18175 3a9eacf0075b3d82dc787f6619d72814 286 Gene3D G3DSA:3.40.50.720 2 285 2.0E-58 T 13-10-2018 RAM_18175 3a9eacf0075b3d82dc787f6619d72814 286 SUPERFAMILY SSF51735 2 275 1.52E-39 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_18175 3a9eacf0075b3d82dc787f6619d72814 286 Pfam PF13460 NAD(P)H-binding 6 180 1.1E-23 T 13-10-2018 IPR016040 NAD(P)-binding domain RAM_09115 2af6d6ad73a55dbc4171995040b4bf2e 234 Gene3D G3DSA:3.30.160.20 154 223 2.5E-21 T 13-10-2018 RAM_09115 2af6d6ad73a55dbc4171995040b4bf2e 234 SUPERFAMILY SSF69065 9 156 4.71E-44 T 13-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 RAM_09115 2af6d6ad73a55dbc4171995040b4bf2e 234 Hamap MF_00104 Ribonuclease 3 [rnc]. 1 217 29.803 T 13-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 RAM_09115 2af6d6ad73a55dbc4171995040b4bf2e 234 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 10 219 1.1E-67 T 13-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 RAM_09115 2af6d6ad73a55dbc4171995040b4bf2e 234 SMART SM00358 155 221 3.0E-23 T 13-10-2018 IPR014720 Double-stranded RNA-binding domain RAM_09115 2af6d6ad73a55dbc4171995040b4bf2e 234 Pfam PF00035 Double-stranded RNA binding motif 155 220 6.0E-15 T 13-10-2018 IPR014720 Double-stranded RNA-binding domain RAM_09115 2af6d6ad73a55dbc4171995040b4bf2e 234 Gene3D G3DSA:1.10.1520.10 1 147 3.5E-44 T 13-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 RAM_09115 2af6d6ad73a55dbc4171995040b4bf2e 234 Pfam PF14622 Ribonuclease-III-like 10 137 2.0E-34 T 13-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 RAM_09115 2af6d6ad73a55dbc4171995040b4bf2e 234 SMART SM00535 12 148 1.5E-50 T 13-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 RAM_09115 2af6d6ad73a55dbc4171995040b4bf2e 234 ProSitePatterns PS00517 Ribonuclease III family signature. 34 42 - T 13-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 RAM_09115 2af6d6ad73a55dbc4171995040b4bf2e 234 SUPERFAMILY SSF54768 109 220 2.83E-25 T 13-10-2018 RAM_18970 8f935f9b4ecbc68d77b4cca9c3d9b672 321 Gene3D G3DSA:3.30.450.180 110 290 1.4E-15 T 13-10-2018 RAM_18970 8f935f9b4ecbc68d77b4cca9c3d9b672 321 Gene3D G3DSA:1.10.260.40 27 102 4.2E-5 T 13-10-2018 RAM_18970 8f935f9b4ecbc68d77b4cca9c3d9b672 321 Pfam PF13560 Helix-turn-helix domain 31 85 1.4E-12 T 13-10-2018 RAM_18970 8f935f9b4ecbc68d77b4cca9c3d9b672 321 SMART SM00530 6 82 8.7E-5 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_18970 8f935f9b4ecbc68d77b4cca9c3d9b672 321 SUPERFAMILY SSF47413 31 79 6.0E-6 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_43275 7f86e68209a9c6958566aaa2c3b2f801 378 Gene3D G3DSA:1.20.140.10 233 377 1.1E-54 T 13-10-2018 RAM_43275 7f86e68209a9c6958566aaa2c3b2f801 378 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 334 353 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RAM_43275 7f86e68209a9c6958566aaa2c3b2f801 378 SUPERFAMILY SSF56645 8 239 3.66E-68 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_43275 7f86e68209a9c6958566aaa2c3b2f801 378 Gene3D G3DSA:2.40.110.10 123 232 3.3E-35 T 13-10-2018 RAM_43275 7f86e68209a9c6958566aaa2c3b2f801 378 SUPERFAMILY SSF47203 226 376 1.1E-55 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_43275 7f86e68209a9c6958566aaa2c3b2f801 378 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 124 214 2.4E-23 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RAM_43275 7f86e68209a9c6958566aaa2c3b2f801 378 Gene3D G3DSA:1.10.540.10 13 121 3.3E-29 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_43275 7f86e68209a9c6958566aaa2c3b2f801 378 PIRSF PIRSF016578 3 365 2.3E-16 T 13-10-2018 RAM_43275 7f86e68209a9c6958566aaa2c3b2f801 378 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 126 138 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RAM_43275 7f86e68209a9c6958566aaa2c3b2f801 378 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 227 375 1.7E-48 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_43275 7f86e68209a9c6958566aaa2c3b2f801 378 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 10 119 2.3E-25 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_38770 1bb3815fe80de6997a7b4d1f4ed53bee 124 Pfam PF01047 MarR family 40 95 2.0E-9 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_38770 1bb3815fe80de6997a7b4d1f4ed53bee 124 ProSitePatterns PS01117 MarR-type HTH domain signature. 69 104 - T 13-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site RAM_38770 1bb3815fe80de6997a7b4d1f4ed53bee 124 SMART SM00347 30 123 7.4E-9 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_38770 1bb3815fe80de6997a7b4d1f4ed53bee 124 SUPERFAMILY SSF46785 11 123 5.15E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_38770 1bb3815fe80de6997a7b4d1f4ed53bee 124 Gene3D G3DSA:1.10.10.10 2 124 5.1E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_03995 d90169fc1d80f26c552e5c8c94a2a45a 518 Pfam PF02540 NAD synthase 216 250 2.2E-5 T 13-10-2018 IPR022310 NAD/GMP synthase RAM_03995 d90169fc1d80f26c552e5c8c94a2a45a 518 PRINTS PR00096 Glutamine amidotransferase superfamily signature 168 181 2.6E-9 T 13-10-2018 RAM_03995 d90169fc1d80f26c552e5c8c94a2a45a 518 PRINTS PR00096 Glutamine amidotransferase superfamily signature 79 90 2.6E-9 T 13-10-2018 RAM_03995 d90169fc1d80f26c552e5c8c94a2a45a 518 PRINTS PR00096 Glutamine amidotransferase superfamily signature 52 61 2.6E-9 T 13-10-2018 RAM_03995 d90169fc1d80f26c552e5c8c94a2a45a 518 Pfam PF00117 Glutamine amidotransferase class-I 10 190 1.3E-41 T 13-10-2018 IPR017926 Glutamine amidotransferase RAM_03995 d90169fc1d80f26c552e5c8c94a2a45a 518 Gene3D G3DSA:3.40.50.880 6 200 9.4E-54 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_03995 d90169fc1d80f26c552e5c8c94a2a45a 518 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 5 518 52.791 T 13-10-2018 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221 RAM_03995 d90169fc1d80f26c552e5c8c94a2a45a 518 Gene3D G3DSA:3.30.300.10 398 518 6.8E-50 T 13-10-2018 RAM_03995 d90169fc1d80f26c552e5c8c94a2a45a 518 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 204 518 5.2E-145 T 13-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 RAM_03995 d90169fc1d80f26c552e5c8c94a2a45a 518 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 49 63 3.0E-8 T 13-10-2018 RAM_03995 d90169fc1d80f26c552e5c8c94a2a45a 518 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 8 22 3.0E-8 T 13-10-2018 RAM_03995 d90169fc1d80f26c552e5c8c94a2a45a 518 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 79 95 3.0E-8 T 13-10-2018 RAM_03995 d90169fc1d80f26c552e5c8c94a2a45a 518 Gene3D G3DSA:3.40.50.620 201 397 1.9E-71 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAM_03995 d90169fc1d80f26c552e5c8c94a2a45a 518 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 8 195 3.4E-69 T 13-10-2018 IPR004739 GMP synthase, glutamine amidotransferase GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 RAM_03995 d90169fc1d80f26c552e5c8c94a2a45a 518 PRINTS PR00097 Anthranilate synthase component II signature 168 181 1.8E-6 T 13-10-2018 RAM_03995 d90169fc1d80f26c552e5c8c94a2a45a 518 PRINTS PR00097 Anthranilate synthase component II signature 52 61 1.8E-6 T 13-10-2018 RAM_03995 d90169fc1d80f26c552e5c8c94a2a45a 518 PRINTS PR00097 Anthranilate synthase component II signature 79 90 1.8E-6 T 13-10-2018 RAM_03995 d90169fc1d80f26c552e5c8c94a2a45a 518 Pfam PF00958 GMP synthase C terminal domain 425 517 1.1E-38 T 13-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 RAM_03995 d90169fc1d80f26c552e5c8c94a2a45a 518 SUPERFAMILY SSF52402 184 438 4.41E-54 T 13-10-2018 RAM_03995 d90169fc1d80f26c552e5c8c94a2a45a 518 SUPERFAMILY SSF52317 6 228 6.27E-54 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_03995 d90169fc1d80f26c552e5c8c94a2a45a 518 SUPERFAMILY SSF54810 397 518 1.05E-45 T 13-10-2018 RAM_09390 d24c479567fb7e298248201e23e8bbb4 314 Gene3D G3DSA:3.40.50.720 98 281 4.2E-114 T 13-10-2018 RAM_09390 d24c479567fb7e298248201e23e8bbb4 314 Gene3D G3DSA:3.40.50.720 3 307 4.2E-114 T 13-10-2018 RAM_09390 d24c479567fb7e298248201e23e8bbb4 314 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 109 281 1.6E-58 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 RAM_09390 d24c479567fb7e298248201e23e8bbb4 314 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 221 237 - T 13-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site RAM_09390 d24c479567fb7e298248201e23e8bbb4 314 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 4 312 1.6E-30 T 13-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 RAM_09390 d24c479567fb7e298248201e23e8bbb4 314 SUPERFAMILY SSF51735 101 282 1.41E-59 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_09390 d24c479567fb7e298248201e23e8bbb4 314 SUPERFAMILY SSF52283 3 132 2.65E-32 T 13-10-2018 RAM_09390 d24c479567fb7e298248201e23e8bbb4 314 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 192 214 - T 13-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site RAM_17225 00f6c8e5d281049ac09a84e2a6e3dbd6 281 Pfam PF00378 Enoyl-CoA hydratase/isomerase 12 241 8.3E-41 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RAM_17225 00f6c8e5d281049ac09a84e2a6e3dbd6 281 SUPERFAMILY SSF52096 2 255 6.55E-66 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_17225 00f6c8e5d281049ac09a84e2a6e3dbd6 281 Gene3D G3DSA:3.90.226.10 4 277 2.0E-84 T 13-10-2018 RAM_28950 e6823e2a5a1b771da979ff782339a00e 713 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 81 243 3.3E-27 T 13-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like RAM_40580 40870be5239c9a2926e1ad283aaa90c4 630 TIGRFAM TIGR04267 mod_HExxH: HEXXH motif domain 16 434 2.7E-103 T 13-10-2018 IPR026337 HEXXH motif domain RAM_22470 676cd497ade01bddde6e53af10af281f 255 SUPERFAMILY SSF46785 5 77 1.19E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_22470 676cd497ade01bddde6e53af10af281f 255 Pfam PF09339 IclR helix-turn-helix domain 7 57 7.9E-17 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RAM_22470 676cd497ade01bddde6e53af10af281f 255 Gene3D G3DSA:3.30.450.40 76 254 1.1E-36 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_22470 676cd497ade01bddde6e53af10af281f 255 Gene3D G3DSA:1.10.10.10 4 75 1.6E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_22470 676cd497ade01bddde6e53af10af281f 255 SUPERFAMILY SSF55781 71 251 4.58E-34 T 13-10-2018 RAM_22470 676cd497ade01bddde6e53af10af281f 255 SMART SM00346 5 95 2.6E-27 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RAM_22470 676cd497ade01bddde6e53af10af281f 255 Pfam PF01614 Bacterial transcriptional regulator 126 248 3.1E-24 T 13-10-2018 IPR014757 Transcription regulator IclR, C-terminal RAM_30075 bf067e5f55267aeef3913f8c9acc7583 156 Pfam PF01047 MarR family 43 95 8.1E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_30075 bf067e5f55267aeef3913f8c9acc7583 156 PRINTS PR00598 Bacterial regulatory protein MarR family signature 91 107 5.9E-13 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_30075 bf067e5f55267aeef3913f8c9acc7583 156 PRINTS PR00598 Bacterial regulatory protein MarR family signature 121 141 5.9E-13 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_30075 bf067e5f55267aeef3913f8c9acc7583 156 PRINTS PR00598 Bacterial regulatory protein MarR family signature 72 87 5.9E-13 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_30075 bf067e5f55267aeef3913f8c9acc7583 156 PRINTS PR00598 Bacterial regulatory protein MarR family signature 55 71 5.9E-13 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_30075 bf067e5f55267aeef3913f8c9acc7583 156 SMART SM00347 31 131 2.4E-19 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_30075 bf067e5f55267aeef3913f8c9acc7583 156 Gene3D G3DSA:1.10.10.10 6 146 7.5E-32 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_30075 bf067e5f55267aeef3913f8c9acc7583 156 SUPERFAMILY SSF46785 12 142 4.32E-30 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_38895 ae44292f72600a95c3638fb84116c159 331 SMART SM00861 3 178 7.3E-64 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain RAM_38895 ae44292f72600a95c3638fb84116c159 331 Pfam PF02780 Transketolase, C-terminal domain 193 313 1.1E-40 T 13-10-2018 IPR033248 Transketolase, C-terminal domain RAM_38895 ae44292f72600a95c3638fb84116c159 331 SUPERFAMILY SSF52922 191 319 1.7E-39 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RAM_38895 ae44292f72600a95c3638fb84116c159 331 Gene3D G3DSA:3.40.50.970 1 192 3.2E-74 T 13-10-2018 RAM_38895 ae44292f72600a95c3638fb84116c159 331 SUPERFAMILY SSF52518 3 181 8.34E-67 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_38895 ae44292f72600a95c3638fb84116c159 331 Gene3D G3DSA:3.40.50.920 193 321 1.7E-45 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RAM_38895 ae44292f72600a95c3638fb84116c159 331 Pfam PF02779 Transketolase, pyrimidine binding domain 4 174 1.8E-43 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain RAM_27860 aeef3ed6a9ea53e01d3112968990411f 154 PRINTS PR01438 Universal stress protein signature 104 116 4.4E-12 T 13-10-2018 IPR006015 Universal stress protein A RAM_27860 aeef3ed6a9ea53e01d3112968990411f 154 PRINTS PR01438 Universal stress protein signature 122 144 4.4E-12 T 13-10-2018 IPR006015 Universal stress protein A RAM_27860 aeef3ed6a9ea53e01d3112968990411f 154 PRINTS PR01438 Universal stress protein signature 9 27 4.4E-12 T 13-10-2018 IPR006015 Universal stress protein A RAM_27860 aeef3ed6a9ea53e01d3112968990411f 154 SUPERFAMILY SSF52402 11 145 1.67E-22 T 13-10-2018 RAM_27860 aeef3ed6a9ea53e01d3112968990411f 154 Pfam PF00582 Universal stress protein family 10 143 1.9E-19 T 13-10-2018 IPR006016 UspA RAM_27860 aeef3ed6a9ea53e01d3112968990411f 154 Gene3D G3DSA:3.40.50.620 2 150 6.6E-28 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAM_09895 91f187d31d6fa691fd00a20b5f03987b 290 PIRSF PIRSF006493 1 285 9.5E-76 T 13-10-2018 IPR009187 Non-homologous end joining protein Ku, prokaryotic type RAM_09895 91f187d31d6fa691fd00a20b5f03987b 290 SMART SM00559 49 176 1.2E-21 T 13-10-2018 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: R-HSA-164843|Reactome: R-HSA-1834949|Reactome: R-HSA-3270619|Reactome: R-HSA-5693571|Reactome: R-HSA-6798695 RAM_09895 91f187d31d6fa691fd00a20b5f03987b 290 Pfam PF02735 Ku70/Ku80 beta-barrel domain 10 173 7.0E-31 T 13-10-2018 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: R-HSA-164843|Reactome: R-HSA-1834949|Reactome: R-HSA-3270619|Reactome: R-HSA-5693571|Reactome: R-HSA-6798695 RAM_09895 91f187d31d6fa691fd00a20b5f03987b 290 Hamap MF_01875 Non-homologous end joining protein Ku [ku]. 1 248 28.0 T 13-10-2018 IPR009187 Non-homologous end joining protein Ku, prokaryotic type RAM_09895 91f187d31d6fa691fd00a20b5f03987b 290 Gene3D G3DSA:2.40.290.10 1 173 9.8E-15 T 13-10-2018 IPR016194 SPOC-like, C-terminal domain superfamily RAM_09895 91f187d31d6fa691fd00a20b5f03987b 290 SUPERFAMILY SSF100939 1 253 1.61E-43 T 13-10-2018 IPR016194 SPOC-like, C-terminal domain superfamily RAM_09895 91f187d31d6fa691fd00a20b5f03987b 290 TIGRFAM TIGR02772 Ku_bact: Ku protein 1 250 2.0E-67 T 13-10-2018 IPR009187 Non-homologous end joining protein Ku, prokaryotic type RAM_08915 7addc3ef0c1982f6ef9711202403422d 371 Gene3D G3DSA:3.40.1660.10 1 43 1.1E-6 T 13-10-2018 RAM_08915 7addc3ef0c1982f6ef9711202403422d 371 Gene3D G3DSA:3.40.1660.10 221 326 9.6E-8 T 13-10-2018 RAM_08915 7addc3ef0c1982f6ef9711202403422d 371 Pfam PF05139 Erythromycin esterase 38 327 8.8E-38 T 13-10-2018 IPR007815 Erythromycin esterase GO:0046677 RAM_08915 7addc3ef0c1982f6ef9711202403422d 371 Gene3D G3DSA:3.30.1870.10 44 107 2.0E-6 T 13-10-2018 RAM_08915 7addc3ef0c1982f6ef9711202403422d 371 SUPERFAMILY SSF159501 5 360 2.12E-56 T 13-10-2018 RAM_01750 4b0113c6b05a00c41c029c2eca9512cd 344 SUPERFAMILY SSF111331 83 142 5.36E-8 T 13-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily RAM_01750 4b0113c6b05a00c41c029c2eca9512cd 344 PIRSF PIRSF018567 2 340 1.2E-106 T 13-10-2018 IPR011391 Acetoin catabolism kinase AcoX RAM_01750 4b0113c6b05a00c41c029c2eca9512cd 344 Pfam PF01513 ATP-NAD kinase 8 278 8.3E-18 T 13-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 RAM_01750 4b0113c6b05a00c41c029c2eca9512cd 344 Gene3D G3DSA:3.40.50.10330 81 165 1.1E-5 T 13-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 RAM_45090 3b67fb8fe75477e83349c09d208f6949 401 Gene3D G3DSA:3.40.50.300 2 184 3.1E-44 T 13-10-2018 RAM_45090 3b67fb8fe75477e83349c09d208f6949 401 SUPERFAMILY SSF52540 10 223 1.17E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_45090 3b67fb8fe75477e83349c09d208f6949 401 TIGRFAM TIGR00678 holB: DNA polymerase III, delta' subunit 42 219 1.2E-55 T 13-10-2018 IPR004622 DNA polymerase III, delta prime subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAM_45090 3b67fb8fe75477e83349c09d208f6949 401 Pfam PF13177 DNA polymerase III, delta subunit 42 183 4.0E-34 T 13-10-2018 RAM_45090 3b67fb8fe75477e83349c09d208f6949 401 SMART SM00382 44 185 2.1E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_35070 5ef89897b1f20af4ba014b000524edb5 127 Pfam PF03995 Peptidase inhibitor family I36 37 103 1.5E-10 T 13-10-2018 RAM_11110 7cfb0670778e30446fca7c9c72e98a08 225 Gene3D G3DSA:3.90.550.10 4 225 2.4E-60 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_11110 7cfb0670778e30446fca7c9c72e98a08 225 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 6 224 1.1E-46 T 13-10-2018 IPR034683 Cytidylyltransferase IspD/TarI GO:0070567 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 RAM_11110 7cfb0670778e30446fca7c9c72e98a08 225 SUPERFAMILY SSF53448 6 223 1.24E-42 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_32000 8c3e7dfd1ec276e0dda675ec1a26ea95 418 Gene3D G3DSA:1.10.630.10 5 417 2.3E-113 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_32000 8c3e7dfd1ec276e0dda675ec1a26ea95 418 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 359 368 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RAM_32000 8c3e7dfd1ec276e0dda675ec1a26ea95 418 SUPERFAMILY SSF48264 28 417 2.62E-74 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_32000 8c3e7dfd1ec276e0dda675ec1a26ea95 418 PRINTS PR00359 B-class P450 signature 357 366 2.9E-38 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_32000 8c3e7dfd1ec276e0dda675ec1a26ea95 418 PRINTS PR00359 B-class P450 signature 308 335 2.9E-38 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_32000 8c3e7dfd1ec276e0dda675ec1a26ea95 418 PRINTS PR00359 B-class P450 signature 163 178 2.9E-38 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_32000 8c3e7dfd1ec276e0dda675ec1a26ea95 418 PRINTS PR00359 B-class P450 signature 101 112 2.9E-38 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_32000 8c3e7dfd1ec276e0dda675ec1a26ea95 418 PRINTS PR00359 B-class P450 signature 291 302 2.9E-38 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_32000 8c3e7dfd1ec276e0dda675ec1a26ea95 418 PRINTS PR00359 B-class P450 signature 208 230 2.9E-38 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_32000 8c3e7dfd1ec276e0dda675ec1a26ea95 418 PRINTS PR00359 B-class P450 signature 336 351 2.9E-38 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_32000 8c3e7dfd1ec276e0dda675ec1a26ea95 418 PRINTS PR00359 B-class P450 signature 366 377 2.9E-38 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_32000 8c3e7dfd1ec276e0dda675ec1a26ea95 418 Pfam PF00067 Cytochrome P450 292 387 6.7E-17 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_46540 f13c91c33dafd247d6401d7a0e961885 169 TIGRFAM TIGR02983 SigE-fam_strep: RNA polymerase sigma-70 factor, sigma-E family 3 163 3.8E-49 T 13-10-2018 IPR014325 RNA polymerase sigma-E factor, actinobacteria GO:0016987 RAM_46540 f13c91c33dafd247d6401d7a0e961885 169 SUPERFAMILY SSF88659 103 162 3.92E-13 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_46540 f13c91c33dafd247d6401d7a0e961885 169 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 9 160 1.1E-20 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_46540 f13c91c33dafd247d6401d7a0e961885 169 Gene3D G3DSA:1.10.10.10 101 167 1.7E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_46540 f13c91c33dafd247d6401d7a0e961885 169 Gene3D G3DSA:1.10.1740.10 1 96 6.5E-9 T 13-10-2018 RAM_46540 f13c91c33dafd247d6401d7a0e961885 169 SUPERFAMILY SSF88946 3 93 3.92E-14 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_46540 f13c91c33dafd247d6401d7a0e961885 169 Pfam PF08281 Sigma-70, region 4 104 157 8.2E-13 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_46540 f13c91c33dafd247d6401d7a0e961885 169 Pfam PF04542 Sigma-70 region 2 15 79 5.6E-9 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_40865 4577c0774f130eb8d785fa27669a8a69 426 Pfam PF02709 N-terminal domain of galactosyltransferase 334 370 2.8E-9 T 13-10-2018 IPR027791 Galactosyltransferase, C-terminal Reactome: R-HSA-2022854|Reactome: R-HSA-975577 RAM_40865 4577c0774f130eb8d785fa27669a8a69 426 Gene3D G3DSA:3.90.550.10 168 400 4.9E-28 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_40865 4577c0774f130eb8d785fa27669a8a69 426 SUPERFAMILY SSF53448 173 388 1.22E-27 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_41815 71034516a207689022fc824c4f2515dd 591 Gene3D G3DSA:3.30.230.10 416 589 4.5E-21 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RAM_41815 71034516a207689022fc824c4f2515dd 591 Gene3D G3DSA:3.30.70.870 320 391 1.9E-9 T 13-10-2018 RAM_41815 71034516a207689022fc824c4f2515dd 591 Pfam PF14492 Elongation Factor G, domain II 320 384 1.0E-6 T 13-10-2018 RAM_41815 71034516a207689022fc824c4f2515dd 591 SUPERFAMILY SSF50447 200 314 3.09E-14 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RAM_41815 71034516a207689022fc824c4f2515dd 591 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 46 61 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site RAM_41815 71034516a207689022fc824c4f2515dd 591 SMART SM00889 392 508 4.1E-4 T 13-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 RAM_41815 71034516a207689022fc824c4f2515dd 591 Gene3D G3DSA:3.40.50.300 2 225 4.2E-66 T 13-10-2018 RAM_41815 71034516a207689022fc824c4f2515dd 591 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 7 151 9.3E-26 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 RAM_41815 71034516a207689022fc824c4f2515dd 591 SUPERFAMILY SSF54980 511 589 5.28E-7 T 13-10-2018 IPR035647 EF-G domain III/V-like RAM_41815 71034516a207689022fc824c4f2515dd 591 PRINTS PR01037 Tetracycline resistance protein TetO/TetQ/TetM family signature 111 134 2.6E-15 T 13-10-2018 RAM_41815 71034516a207689022fc824c4f2515dd 591 PRINTS PR01037 Tetracycline resistance protein TetO/TetQ/TetM family signature 446 468 2.6E-15 T 13-10-2018 RAM_41815 71034516a207689022fc824c4f2515dd 591 PRINTS PR01037 Tetracycline resistance protein TetO/TetQ/TetM family signature 431 445 2.6E-15 T 13-10-2018 RAM_41815 71034516a207689022fc824c4f2515dd 591 PRINTS PR01037 Tetracycline resistance protein TetO/TetQ/TetM family signature 480 497 2.6E-15 T 13-10-2018 RAM_41815 71034516a207689022fc824c4f2515dd 591 SUPERFAMILY SSF54980 319 390 4.32E-8 T 13-10-2018 IPR035647 EF-G domain III/V-like RAM_41815 71034516a207689022fc824c4f2515dd 591 Gene3D G3DSA:3.30.70.240 514 584 4.5E-21 T 13-10-2018 RAM_41815 71034516a207689022fc824c4f2515dd 591 SUPERFAMILY SSF54211 410 507 3.19E-10 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RAM_41815 71034516a207689022fc824c4f2515dd 591 PRINTS PR00315 GTP-binding elongation factor signature 89 100 6.6E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_41815 71034516a207689022fc824c4f2515dd 591 PRINTS PR00315 GTP-binding elongation factor signature 73 83 6.6E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_41815 71034516a207689022fc824c4f2515dd 591 PRINTS PR00315 GTP-binding elongation factor signature 7 20 6.6E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_41815 71034516a207689022fc824c4f2515dd 591 PRINTS PR00315 GTP-binding elongation factor signature 53 61 6.6E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_41815 71034516a207689022fc824c4f2515dd 591 PRINTS PR00315 GTP-binding elongation factor signature 125 134 6.6E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_41815 71034516a207689022fc824c4f2515dd 591 Pfam PF03764 Elongation factor G, domain IV 411 507 8.6E-11 T 13-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 RAM_41815 71034516a207689022fc824c4f2515dd 591 SUPERFAMILY SSF52540 4 216 5.57E-65 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_41815 71034516a207689022fc824c4f2515dd 591 Pfam PF00009 Elongation factor Tu GTP binding domain 5 216 4.3E-53 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_41815 71034516a207689022fc824c4f2515dd 591 Gene3D G3DSA:2.40.30.10 226 316 1.2E-8 T 13-10-2018 RAM_41815 71034516a207689022fc824c4f2515dd 591 Pfam PF00679 Elongation factor G C-terminus 511 589 4.4E-8 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like RAM_17050 3318f5ba584b3ba6d8a6afac15650428 215 Gene3D G3DSA:3.30.460.10 15 167 3.8E-49 T 13-10-2018 RAM_17050 3318f5ba584b3ba6d8a6afac15650428 215 SUPERFAMILY SSF81301 25 213 6.87E-52 T 13-10-2018 RAM_17050 3318f5ba584b3ba6d8a6afac15650428 215 SMART SM00954 62 185 4.0E-36 T 13-10-2018 IPR007685 RelA/SpoT GO:0015969 RAM_17050 3318f5ba584b3ba6d8a6afac15650428 215 Gene3D G3DSA:1.10.287.860 168 215 3.7E-15 T 13-10-2018 RAM_17050 3318f5ba584b3ba6d8a6afac15650428 215 Pfam PF04607 Region found in RelA / SpoT proteins 62 182 8.1E-33 T 13-10-2018 IPR007685 RelA/SpoT GO:0015969 RAM_43800 aa8b5060762c772c3691d0b593735e75 256 Gene3D G3DSA:1.10.3720.10 50 243 8.8E-22 T 13-10-2018 IPR035906 MetI-like superfamily RAM_43800 aa8b5060762c772c3691d0b593735e75 256 SUPERFAMILY SSF161098 48 232 5.01E-27 T 13-10-2018 IPR035906 MetI-like superfamily RAM_43800 aa8b5060762c772c3691d0b593735e75 256 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 73 232 2.7E-20 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_42720 3e39ce5527beefaf090336837534e47f 356 Gene3D G3DSA:3.40.50.720 4 150 1.3E-31 T 13-10-2018 RAM_42720 3e39ce5527beefaf090336837534e47f 356 Gene3D G3DSA:3.40.50.720 171 282 1.5E-42 T 13-10-2018 RAM_42720 3e39ce5527beefaf090336837534e47f 356 SUPERFAMILY SSF51735 3 348 1.62E-77 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_42720 3e39ce5527beefaf090336837534e47f 356 Gene3D G3DSA:3.90.25.10 215 345 1.5E-42 T 13-10-2018 RAM_42720 3e39ce5527beefaf090336837534e47f 356 Pfam PF01370 NAD dependent epimerase/dehydratase family 6 140 1.9E-21 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 RAM_42720 3e39ce5527beefaf090336837534e47f 356 Pfam PF01370 NAD dependent epimerase/dehydratase family 173 275 2.9E-21 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 RAM_21345 4933c00395b3dccab5416b085d86f3f0 540 SMART SM00490 249 330 2.5E-27 T 13-10-2018 IPR001650 Helicase, C-terminal RAM_21345 4933c00395b3dccab5416b085d86f3f0 540 Pfam PF00270 DEAD/DEAH box helicase 25 184 1.8E-14 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RAM_21345 4933c00395b3dccab5416b085d86f3f0 540 Gene3D G3DSA:3.40.50.300 2 205 6.0E-64 T 13-10-2018 RAM_21345 4933c00395b3dccab5416b085d86f3f0 540 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 16 351 5.0E-104 T 13-10-2018 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 RAM_21345 4933c00395b3dccab5416b085d86f3f0 540 SMART SM00487 18 216 3.5E-24 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RAM_21345 4933c00395b3dccab5416b085d86f3f0 540 Pfam PF16124 RecQ zinc-binding 429 475 7.5E-12 T 13-10-2018 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain RAM_21345 4933c00395b3dccab5416b085d86f3f0 540 SUPERFAMILY SSF52540 32 342 1.83E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_21345 4933c00395b3dccab5416b085d86f3f0 540 ProSitePatterns PS00690 DEAH-box subfamily ATP-dependent helicases signature. 138 147 - T 13-10-2018 IPR002464 DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site RAM_21345 4933c00395b3dccab5416b085d86f3f0 540 Pfam PF00271 Helicase conserved C-terminal domain 239 329 9.4E-19 T 13-10-2018 IPR001650 Helicase, C-terminal RAM_43390 22e5c8e06815681cef33d9eb6e522827 206 SUPERFAMILY SSF46689 3 74 1.65E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_43390 22e5c8e06815681cef33d9eb6e522827 206 Gene3D G3DSA:1.10.357.10 2 205 2.2E-52 T 13-10-2018 RAM_43390 22e5c8e06815681cef33d9eb6e522827 206 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 58 5.9E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_01360 93c7e24fe01f110b38f5bf929a5b307f 229 SMART SM00345 10 69 1.9E-21 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_01360 93c7e24fe01f110b38f5bf929a5b307f 229 SUPERFAMILY SSF46785 6 73 4.69E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_01360 93c7e24fe01f110b38f5bf929a5b307f 229 SUPERFAMILY SSF48008 89 218 4.18E-26 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_01360 93c7e24fe01f110b38f5bf929a5b307f 229 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 43 59 6.4E-8 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_01360 93c7e24fe01f110b38f5bf929a5b307f 229 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 29 43 6.4E-8 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_01360 93c7e24fe01f110b38f5bf929a5b307f 229 Pfam PF07729 FCD domain 91 212 9.7E-26 T 13-10-2018 IPR011711 GntR, C-terminal RAM_01360 93c7e24fe01f110b38f5bf929a5b307f 229 Gene3D G3DSA:1.10.10.10 8 78 9.4E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_01360 93c7e24fe01f110b38f5bf929a5b307f 229 Gene3D G3DSA:1.20.120.530 84 221 7.3E-26 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_01360 93c7e24fe01f110b38f5bf929a5b307f 229 SMART SM00895 90 214 1.5E-18 T 13-10-2018 IPR011711 GntR, C-terminal RAM_01360 93c7e24fe01f110b38f5bf929a5b307f 229 Pfam PF00392 Bacterial regulatory proteins, gntR family 10 69 2.0E-19 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_31230 dbf8352af79f5b405a10c75e4858881c 126 Hamap MF_00612 UPF0225 protein YchJ [ychJ]. 2 125 27.362 T 13-10-2018 IPR023006 Uncharacterised protein family UPF0225 RAM_31230 dbf8352af79f5b405a10c75e4858881c 126 Gene3D G3DSA:3.10.450.50 4 126 1.4E-35 T 13-10-2018 RAM_31230 dbf8352af79f5b405a10c75e4858881c 126 SUPERFAMILY SSF54427 27 125 8.76E-32 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_35605 8272d5f4aae640d58f3939a6c6769bf6 220 Pfam PF09339 IclR helix-turn-helix domain 11 58 4.8E-10 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RAM_35605 8272d5f4aae640d58f3939a6c6769bf6 220 SUPERFAMILY SSF55781 84 212 1.77E-26 T 13-10-2018 RAM_35605 8272d5f4aae640d58f3939a6c6769bf6 220 Pfam PF01614 Bacterial transcriptional regulator 151 212 1.3E-9 T 13-10-2018 IPR014757 Transcription regulator IclR, C-terminal RAM_35605 8272d5f4aae640d58f3939a6c6769bf6 220 Gene3D G3DSA:3.30.450.40 74 148 2.0E-18 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_35605 8272d5f4aae640d58f3939a6c6769bf6 220 Gene3D G3DSA:3.30.450.40 149 218 6.6E-16 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_35605 8272d5f4aae640d58f3939a6c6769bf6 220 Gene3D G3DSA:1.10.10.10 1 69 2.6E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_35605 8272d5f4aae640d58f3939a6c6769bf6 220 SMART SM00346 9 98 2.5E-7 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RAM_35605 8272d5f4aae640d58f3939a6c6769bf6 220 SUPERFAMILY SSF46785 9 79 5.05E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_16125 c051fff093630693d31fd181310fc42d 663 PIRSF PIRSF001604 1 661 4.0E-194 T 13-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 RAM_16125 c051fff093630693d31fd181310fc42d 663 SUPERFAMILY SSF56091 2 298 3.6E-73 T 13-10-2018 RAM_16125 c051fff093630693d31fd181310fc42d 663 Gene3D G3DSA:3.40.50.10190 575 660 5.6E-18 T 13-10-2018 IPR036420 BRCT domain superfamily RAM_16125 c051fff093630693d31fd181310fc42d 663 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 105 134 - T 13-10-2018 IPR018239 NAD-dependent DNA ligase, active site RAM_16125 c051fff093630693d31fd181310fc42d 663 SMART SM00532 2 428 1.2E-134 T 13-10-2018 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 RAM_16125 c051fff093630693d31fd181310fc42d 663 Hamap MF_01588 DNA ligase [ligA]. 1 657 47.819 T 13-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 RAM_16125 c051fff093630693d31fd181310fc42d 663 Pfam PF12826 Helix-hairpin-helix motif 491 545 2.4E-7 T 13-10-2018 RAM_16125 c051fff093630693d31fd181310fc42d 663 SUPERFAMILY SSF50249 297 374 1.66E-23 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_16125 c051fff093630693d31fd181310fc42d 663 SUPERFAMILY SSF47781 385 562 2.67E-42 T 13-10-2018 IPR010994 RuvA domain 2-like RAM_16125 c051fff093630693d31fd181310fc42d 663 Gene3D G3DSA:1.10.150.20 485 564 1.8E-12 T 13-10-2018 RAM_16125 c051fff093630693d31fd181310fc42d 663 SMART SM00278 525 544 20.0 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RAM_16125 c051fff093630693d31fd181310fc42d 663 SMART SM00278 460 479 27.0 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RAM_16125 c051fff093630693d31fd181310fc42d 663 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 12 651 6.9E-170 T 13-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 RAM_16125 c051fff093630693d31fd181310fc42d 663 Gene3D G3DSA:1.10.150.20 412 484 1.6E-19 T 13-10-2018 RAM_16125 c051fff093630693d31fd181310fc42d 663 SUPERFAMILY SSF52113 578 655 1.22E-8 T 13-10-2018 IPR036420 BRCT domain superfamily RAM_16125 c051fff093630693d31fd181310fc42d 663 Gene3D G3DSA:3.30.470.90 68 298 1.1E-63 T 13-10-2018 RAM_16125 c051fff093630693d31fd181310fc42d 663 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 301 375 2.3E-27 T 13-10-2018 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 RAM_16125 c051fff093630693d31fd181310fc42d 663 Gene3D G3DSA:2.40.50.140 299 386 1.7E-28 T 13-10-2018 RAM_16125 c051fff093630693d31fd181310fc42d 663 SMART SM00292 576 660 2.6E-5 T 13-10-2018 IPR001357 BRCT domain RAM_16125 c051fff093630693d31fd181310fc42d 663 Gene3D G3DSA:1.10.287.610 1 67 1.3E-9 T 13-10-2018 RAM_16125 c051fff093630693d31fd181310fc42d 663 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 578 655 1.7E-4 T 13-10-2018 IPR001357 BRCT domain RAM_16125 c051fff093630693d31fd181310fc42d 663 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 2 298 5.9E-68 T 13-10-2018 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 RAM_16485 bf7b32634d8507d49a601d37d859563a 283 Pfam PF08241 Methyltransferase domain 93 189 4.2E-13 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 RAM_16485 bf7b32634d8507d49a601d37d859563a 283 Gene3D G3DSA:3.40.50.150 9 283 3.2E-70 T 13-10-2018 RAM_16485 bf7b32634d8507d49a601d37d859563a 283 SUPERFAMILY SSF53335 13 255 1.12E-37 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_34460 2bccfedac16e47d9e67193e5bef1ced7 551 TIGRFAM TIGR01499 folC: bifunctional protein FolC 126 545 7.3E-102 T 13-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 RAM_34460 2bccfedac16e47d9e67193e5bef1ced7 551 Gene3D G3DSA:3.90.190.20 405 551 1.2E-35 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 RAM_34460 2bccfedac16e47d9e67193e5bef1ced7 551 Pfam PF08245 Mur ligase middle domain 148 377 3.2E-13 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 RAM_34460 2bccfedac16e47d9e67193e5bef1ced7 551 Gene3D G3DSA:3.40.1190.10 103 404 1.7E-95 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RAM_34460 2bccfedac16e47d9e67193e5bef1ced7 551 SUPERFAMILY SSF53244 405 548 1.23E-26 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 RAM_34460 2bccfedac16e47d9e67193e5bef1ced7 551 Pfam PF02875 Mur ligase family, glutamate ligase domain 403 480 1.4E-12 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 RAM_34460 2bccfedac16e47d9e67193e5bef1ced7 551 SUPERFAMILY SSF53623 108 397 3.66E-86 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RAM_12795 b611ce4573eb8348ca31c13e4b8c7052 344 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 199 207 1.3E-7 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RAM_12795 b611ce4573eb8348ca31c13e4b8c7052 344 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 115 134 1.3E-7 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RAM_12795 b611ce4573eb8348ca31c13e4b8c7052 344 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 57 64 1.3E-7 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RAM_12795 b611ce4573eb8348ca31c13e4b8c7052 344 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 139 148 1.3E-7 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RAM_12795 b611ce4573eb8348ca31c13e4b8c7052 344 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 292 300 - T 13-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RAM_12795 b611ce4573eb8348ca31c13e4b8c7052 344 Pfam PF00970 Oxidoreductase FAD-binding domain 9 105 1.6E-9 T 13-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 RAM_12795 b611ce4573eb8348ca31c13e4b8c7052 344 Pfam PF00175 Oxidoreductase NAD-binding domain 117 213 1.9E-12 T 13-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 RAM_12795 b611ce4573eb8348ca31c13e4b8c7052 344 SUPERFAMILY SSF63380 4 105 2.94E-24 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RAM_12795 b611ce4573eb8348ca31c13e4b8c7052 344 Gene3D G3DSA:3.40.50.80 108 235 5.0E-30 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RAM_12795 b611ce4573eb8348ca31c13e4b8c7052 344 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 262 334 6.4E-14 T 13-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RAM_12795 b611ce4573eb8348ca31c13e4b8c7052 344 Gene3D G3DSA:2.40.30.10 3 106 3.2E-24 T 13-10-2018 RAM_12795 b611ce4573eb8348ca31c13e4b8c7052 344 Gene3D G3DSA:3.10.20.30 239 344 2.1E-27 T 13-10-2018 IPR012675 Beta-grasp domain superfamily RAM_12795 b611ce4573eb8348ca31c13e4b8c7052 344 SUPERFAMILY SSF52343 96 229 1.57E-31 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RAM_12795 b611ce4573eb8348ca31c13e4b8c7052 344 PRINTS PR00410 Phenol hydroxylase reductase family signature 37 49 1.7E-10 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RAM_12795 b611ce4573eb8348ca31c13e4b8c7052 344 PRINTS PR00410 Phenol hydroxylase reductase family signature 199 207 1.7E-10 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RAM_12795 b611ce4573eb8348ca31c13e4b8c7052 344 PRINTS PR00410 Phenol hydroxylase reductase family signature 115 134 1.7E-10 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RAM_12795 b611ce4573eb8348ca31c13e4b8c7052 344 SUPERFAMILY SSF54292 221 338 7.21E-27 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RAM_27890 abc405f1fca1d4e98fc45c72f6f3381f 583 Pfam PF13492 GAF domain 236 373 1.2E-9 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_27890 abc405f1fca1d4e98fc45c72f6f3381f 583 Gene3D G3DSA:3.30.450.40 64 212 6.3E-55 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_27890 abc405f1fca1d4e98fc45c72f6f3381f 583 SMART SM00065 65 212 2.5E-19 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_27890 abc405f1fca1d4e98fc45c72f6f3381f 583 SMART SM00065 233 382 7.7E-9 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_27890 abc405f1fca1d4e98fc45c72f6f3381f 583 Pfam PF13185 GAF domain 65 203 4.0E-18 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_27890 abc405f1fca1d4e98fc45c72f6f3381f 583 SUPERFAMILY SSF55781 47 230 2.62E-37 T 13-10-2018 RAM_27890 abc405f1fca1d4e98fc45c72f6f3381f 583 SUPERFAMILY SSF55781 214 400 1.09E-19 T 13-10-2018 RAM_27890 abc405f1fca1d4e98fc45c72f6f3381f 583 Gene3D G3DSA:3.30.450.40 233 389 3.7E-29 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_27890 abc405f1fca1d4e98fc45c72f6f3381f 583 SUPERFAMILY SSF55874 492 581 4.98E-14 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_27890 abc405f1fca1d4e98fc45c72f6f3381f 583 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 500 547 2.4E-6 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_27890 abc405f1fca1d4e98fc45c72f6f3381f 583 Gene3D G3DSA:3.30.565.10 459 582 5.6E-28 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_27890 abc405f1fca1d4e98fc45c72f6f3381f 583 Pfam PF07730 Histidine kinase 390 450 4.4E-10 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_46640 36505aef7e3fde0a5b28170c98fc0471 413 Pfam PF07690 Major Facilitator Superfamily 14 320 7.6E-31 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_46640 36505aef7e3fde0a5b28170c98fc0471 413 SUPERFAMILY SSF103473 4 395 1.7E-70 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_46640 36505aef7e3fde0a5b28170c98fc0471 413 Gene3D G3DSA:1.20.1250.20 8 401 3.2E-66 T 13-10-2018 RAM_23960 265c4dd3cd14e72250e66a0a6485d7a3 260 Pfam PF01061 ABC-2 type transporter 9 216 4.2E-24 T 13-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 RAM_23960 265c4dd3cd14e72250e66a0a6485d7a3 260 PIRSF PIRSF006648 1 259 1.6E-66 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 RAM_25575 1a4f8fabd56e4d31592b9774c6388ee0 272 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 97 267 8.1E-28 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_25575 1a4f8fabd56e4d31592b9774c6388ee0 272 Gene3D G3DSA:1.10.3720.10 74 268 1.5E-27 T 13-10-2018 IPR035906 MetI-like superfamily RAM_25575 1a4f8fabd56e4d31592b9774c6388ee0 272 SUPERFAMILY SSF161098 73 260 2.75E-34 T 13-10-2018 IPR035906 MetI-like superfamily RAM_17445 572eb229c061b077ea361e5ac1bd0558 191 Gene3D G3DSA:3.40.430.10 1 189 1.1E-36 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RAM_17445 572eb229c061b077ea361e5ac1bd0558 191 Pfam PF01872 RibD C-terminal domain 2 183 1.2E-36 T 13-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 RAM_17445 572eb229c061b077ea361e5ac1bd0558 191 SUPERFAMILY SSF53597 7 185 5.11E-25 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RAM_17200 254bc22b8ed6079fe4582a66baa597a3 333 TIGRFAM TIGR03557 F420_G6P_family: F420-dependent oxidoreductase, G6PDH family 4 330 3.8E-85 T 13-10-2018 IPR019945 F420-dependent glucose-6-phosphate dehydrogenase-related RAM_17200 254bc22b8ed6079fe4582a66baa597a3 333 TIGRFAM TIGR03554 F420_G6P_DH: glucose-6-phosphate dehydrogenase (coenzyme-F420) 2 330 9.1E-176 T 13-10-2018 IPR019944 F420-dependent glucose-6-phosphate dehydrogenase RAM_17200 254bc22b8ed6079fe4582a66baa597a3 333 Hamap MF_02123 F420-dependent glucose-6-phosphate dehydrogenase [fgd]. 1 332 70.032 T 13-10-2018 IPR019944 F420-dependent glucose-6-phosphate dehydrogenase RAM_17200 254bc22b8ed6079fe4582a66baa597a3 333 Pfam PF00296 Luciferase-like monooxygenase 10 304 2.7E-66 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_17200 254bc22b8ed6079fe4582a66baa597a3 333 Gene3D G3DSA:3.20.20.30 1 332 1.6E-100 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_17200 254bc22b8ed6079fe4582a66baa597a3 333 SUPERFAMILY SSF51679 2 330 1.26E-75 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_26455 7868b9452dcae702920b909aafa9a01a 972 Gene3D G3DSA:2.60.40.290 33 138 6.1E-32 T 13-10-2018 IPR012291 CBM2, carbohydrate-binding domain superfamily GO:0004553|GO:0030247 RAM_26455 7868b9452dcae702920b909aafa9a01a 972 PRINTS PR00844 Glycosyl hydrolase family 48 signature 506 530 1.2E-101 T 13-10-2018 IPR000556 Glycoside hydrolase, 48F GO:0004553|GO:0008810|GO:0030245 RAM_26455 7868b9452dcae702920b909aafa9a01a 972 PRINTS PR00844 Glycosyl hydrolase family 48 signature 904 932 1.2E-101 T 13-10-2018 IPR000556 Glycoside hydrolase, 48F GO:0004553|GO:0008810|GO:0030245 RAM_26455 7868b9452dcae702920b909aafa9a01a 972 PRINTS PR00844 Glycosyl hydrolase family 48 signature 364 389 1.2E-101 T 13-10-2018 IPR000556 Glycoside hydrolase, 48F GO:0004553|GO:0008810|GO:0030245 RAM_26455 7868b9452dcae702920b909aafa9a01a 972 PRINTS PR00844 Glycosyl hydrolase family 48 signature 740 766 1.2E-101 T 13-10-2018 IPR000556 Glycoside hydrolase, 48F GO:0004553|GO:0008810|GO:0030245 RAM_26455 7868b9452dcae702920b909aafa9a01a 972 PRINTS PR00844 Glycosyl hydrolase family 48 signature 624 643 1.2E-101 T 13-10-2018 IPR000556 Glycoside hydrolase, 48F GO:0004553|GO:0008810|GO:0030245 RAM_26455 7868b9452dcae702920b909aafa9a01a 972 PRINTS PR00844 Glycosyl hydrolase family 48 signature 795 815 1.2E-101 T 13-10-2018 IPR000556 Glycoside hydrolase, 48F GO:0004553|GO:0008810|GO:0030245 RAM_26455 7868b9452dcae702920b909aafa9a01a 972 PRINTS PR00844 Glycosyl hydrolase family 48 signature 390 407 1.2E-101 T 13-10-2018 IPR000556 Glycoside hydrolase, 48F GO:0004553|GO:0008810|GO:0030245 RAM_26455 7868b9452dcae702920b909aafa9a01a 972 PRINTS PR00844 Glycosyl hydrolase family 48 signature 694 717 1.2E-101 T 13-10-2018 IPR000556 Glycoside hydrolase, 48F GO:0004553|GO:0008810|GO:0030245 RAM_26455 7868b9452dcae702920b909aafa9a01a 972 PRINTS PR00844 Glycosyl hydrolase family 48 signature 551 578 1.2E-101 T 13-10-2018 IPR000556 Glycoside hydrolase, 48F GO:0004553|GO:0008810|GO:0030245 RAM_26455 7868b9452dcae702920b909aafa9a01a 972 Pfam PF00553 Cellulose binding domain 38 136 5.1E-29 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_26455 7868b9452dcae702920b909aafa9a01a 972 Gene3D G3DSA:4.10.870.10 883 954 1.4E-296 T 13-10-2018 IPR027390 Endoglucanase F, domain 3 RAM_26455 7868b9452dcae702920b909aafa9a01a 972 Gene3D G3DSA:1.50.10.10 338 971 1.4E-296 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 RAM_26455 7868b9452dcae702920b909aafa9a01a 972 SUPERFAMILY SSF48208 334 971 1.87E-274 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_26455 7868b9452dcae702920b909aafa9a01a 972 Gene3D G3DSA:2.170.160.10 425 656 1.4E-296 T 13-10-2018 IPR023309 Endoglucanase F, domain 2 RAM_26455 7868b9452dcae702920b909aafa9a01a 972 Gene3D G3DSA:2.60.40.10 144 232 7.6E-27 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_26455 7868b9452dcae702920b909aafa9a01a 972 SMART SM00637 38 136 1.7E-43 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_26455 7868b9452dcae702920b909aafa9a01a 972 Pfam PF02011 Glycosyl hydrolase family 48 338 971 0.0 T 13-10-2018 IPR000556 Glycoside hydrolase, 48F GO:0004553|GO:0008810|GO:0030245 RAM_26455 7868b9452dcae702920b909aafa9a01a 972 SUPERFAMILY SSF49384 37 137 1.26E-26 T 13-10-2018 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily GO:0030246 RAM_47165 95f72767a86c2d53f9e2a4751895acee 611 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 291 454 1.3E-13 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_47165 95f72767a86c2d53f9e2a4751895acee 611 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 474 607 9.0E-31 T 13-10-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain RAM_47165 95f72767a86c2d53f9e2a4751895acee 611 SUPERFAMILY SSF56645 42 297 2.23E-41 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_47165 95f72767a86c2d53f9e2a4751895acee 611 Gene3D G3DSA:1.20.140.10 291 460 1.2E-30 T 13-10-2018 RAM_47165 95f72767a86c2d53f9e2a4751895acee 611 SUPERFAMILY SSF47203 295 470 1.93E-29 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_47165 95f72767a86c2d53f9e2a4751895acee 611 Gene3D G3DSA:2.40.110.20 123 289 3.7E-33 T 13-10-2018 RAM_47165 95f72767a86c2d53f9e2a4751895acee 611 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 162 275 1.8E-18 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RAM_47165 95f72767a86c2d53f9e2a4751895acee 611 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 3 25 1.4E-7 T 13-10-2018 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria RAM_35150 09d0d91908a130cc0d4166cab465c072 387 Pfam PF06441 Epoxide hydrolase N terminus 2 106 4.7E-37 T 13-10-2018 IPR010497 Epoxide hydrolase, N-terminal Reactome: R-HSA-211945 RAM_35150 09d0d91908a130cc0d4166cab465c072 387 SUPERFAMILY SSF53474 2 380 4.54E-89 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_35150 09d0d91908a130cc0d4166cab465c072 387 PRINTS PR00412 Epoxide hydrolase signature 97 115 6.1E-6 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_35150 09d0d91908a130cc0d4166cab465c072 387 PRINTS PR00412 Epoxide hydrolase signature 126 141 6.1E-6 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_35150 09d0d91908a130cc0d4166cab465c072 387 PRINTS PR00412 Epoxide hydrolase signature 358 380 6.1E-6 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_35150 09d0d91908a130cc0d4166cab465c072 387 PIRSF PIRSF001112 1 386 5.1E-112 T 13-10-2018 IPR016292 Epoxide hydrolase GO:0033961 Reactome: R-HSA-211945 RAM_35150 09d0d91908a130cc0d4166cab465c072 387 Gene3D G3DSA:3.40.50.1820 1 387 2.1E-135 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_04270 bfc1191f920132cf1105396b722af885 182 SUPERFAMILY SSF46689 2 61 3.18E-9 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_04270 bfc1191f920132cf1105396b722af885 182 SUPERFAMILY SSF48498 67 173 1.85E-16 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_04270 bfc1191f920132cf1105396b722af885 182 Pfam PF00440 Bacterial regulatory proteins, tetR family 2 36 2.7E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_04270 bfc1191f920132cf1105396b722af885 182 Gene3D G3DSA:1.10.10.60 1 38 2.8E-12 T 13-10-2018 RAM_04270 bfc1191f920132cf1105396b722af885 182 Gene3D G3DSA:1.10.357.10 40 175 1.6E-27 T 13-10-2018 RAM_09330 838da90e5bc4d5135b10be02c68ff7ff 507 SMART SM00382 38 234 5.3E-5 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_09330 838da90e5bc4d5135b10be02c68ff7ff 507 SMART SM00382 290 483 1.3 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_09330 838da90e5bc4d5135b10be02c68ff7ff 507 Gene3D G3DSA:3.40.50.300 7 250 1.5E-53 T 13-10-2018 RAM_09330 838da90e5bc4d5135b10be02c68ff7ff 507 ProSitePatterns PS00211 ABC transporters family signature. 408 422 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_09330 838da90e5bc4d5135b10be02c68ff7ff 507 SUPERFAMILY SSF52540 13 236 3.59E-52 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_09330 838da90e5bc4d5135b10be02c68ff7ff 507 Pfam PF00005 ABC transporter 29 178 1.3E-25 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_09330 838da90e5bc4d5135b10be02c68ff7ff 507 Gene3D G3DSA:3.40.50.300 256 492 1.5E-42 T 13-10-2018 RAM_09330 838da90e5bc4d5135b10be02c68ff7ff 507 SUPERFAMILY SSF52540 281 487 9.75E-38 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_09330 838da90e5bc4d5135b10be02c68ff7ff 507 Pfam PF00005 ABC transporter 282 436 2.4E-20 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_26985 1ef1146d4d049cf83a5512d52ff68745 601 SUPERFAMILY SSF82866 311 561 3.92E-27 T 13-10-2018 RAM_26985 1ef1146d4d049cf83a5512d52ff68745 601 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 40 558 2.0E-121 T 13-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 RAM_26985 1ef1146d4d049cf83a5512d52ff68745 601 Gene3D G3DSA:1.20.1640.10 382 568 3.4E-7 T 13-10-2018 RAM_26985 1ef1146d4d049cf83a5512d52ff68745 601 Pfam PF02355 Protein export membrane protein 388 562 3.1E-8 T 13-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial RAM_26985 1ef1146d4d049cf83a5512d52ff68745 601 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 317 549 1.5E-64 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RAM_26985 1ef1146d4d049cf83a5512d52ff68745 601 Gene3D G3DSA:3.30.1360.200 264 381 1.1E-32 T 13-10-2018 RAM_26985 1ef1146d4d049cf83a5512d52ff68745 601 Gene3D G3DSA:3.30.70.3400 40 125 3.4E-15 T 13-10-2018 RAM_26985 1ef1146d4d049cf83a5512d52ff68745 601 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 2 573 39.116 T 13-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 RAM_26985 1ef1146d4d049cf83a5512d52ff68745 601 Pfam PF07549 SecD/SecF GG Motif 39 57 3.5E-4 T 13-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site RAM_38935 c185b73d8468fd09409be62a9db1cb3d 602 Gene3D G3DSA:1.10.287.130 311 420 3.5E-19 T 13-10-2018 RAM_38935 c185b73d8468fd09409be62a9db1cb3d 602 PRINTS PR00344 Bacterial sensor protein C-terminal signature 566 579 1.7E-18 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_38935 c185b73d8468fd09409be62a9db1cb3d 602 PRINTS PR00344 Bacterial sensor protein C-terminal signature 507 521 1.7E-18 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_38935 c185b73d8468fd09409be62a9db1cb3d 602 PRINTS PR00344 Bacterial sensor protein C-terminal signature 525 535 1.7E-18 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_38935 c185b73d8468fd09409be62a9db1cb3d 602 PRINTS PR00344 Bacterial sensor protein C-terminal signature 542 560 1.7E-18 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_38935 c185b73d8468fd09409be62a9db1cb3d 602 SUPERFAMILY SSF47384 344 426 2.16E-14 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RAM_38935 c185b73d8468fd09409be62a9db1cb3d 602 SMART SM00387 470 582 8.3E-46 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_38935 c185b73d8468fd09409be62a9db1cb3d 602 Gene3D G3DSA:3.30.565.10 424 582 7.6E-46 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_38935 c185b73d8468fd09409be62a9db1cb3d 602 SMART SM00388 361 425 2.2E-12 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_38935 c185b73d8468fd09409be62a9db1cb3d 602 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 471 580 1.0E-29 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_38935 c185b73d8468fd09409be62a9db1cb3d 602 Pfam PF00512 His Kinase A (phospho-acceptor) domain 362 425 1.0E-11 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_38935 c185b73d8468fd09409be62a9db1cb3d 602 SUPERFAMILY SSF55874 414 580 1.83E-48 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_24015 b0f891e277679bf7f8d791d261bf8017 171 Gene3D G3DSA:3.40.630.30 1 162 6.8E-45 T 13-10-2018 RAM_24015 b0f891e277679bf7f8d791d261bf8017 171 Pfam PF13420 Acetyltransferase (GNAT) domain 2 152 5.3E-24 T 13-10-2018 RAM_24015 b0f891e277679bf7f8d791d261bf8017 171 SUPERFAMILY SSF55729 1 158 7.2E-28 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_19295 71b8097db15e796ce52af4d2b2941e38 161 Pfam PF01750 Hydrogenase maturation protease 22 146 1.4E-15 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 RAM_19295 71b8097db15e796ce52af4d2b2941e38 161 TIGRFAM TIGR00072 hydrog_prot: hydrogenase maturation protease 6 147 3.3E-36 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 RAM_19295 71b8097db15e796ce52af4d2b2941e38 161 PRINTS PR00446 Hydrogen uptake protein signature 58 68 4.1E-15 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 RAM_19295 71b8097db15e796ce52af4d2b2941e38 161 PRINTS PR00446 Hydrogen uptake protein signature 17 28 4.1E-15 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 RAM_19295 71b8097db15e796ce52af4d2b2941e38 161 PRINTS PR00446 Hydrogen uptake protein signature 36 53 4.1E-15 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 RAM_19295 71b8097db15e796ce52af4d2b2941e38 161 PRINTS PR00446 Hydrogen uptake protein signature 69 85 4.1E-15 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 RAM_19295 71b8097db15e796ce52af4d2b2941e38 161 PRINTS PR00446 Hydrogen uptake protein signature 5 17 4.1E-15 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 RAM_19295 71b8097db15e796ce52af4d2b2941e38 161 Gene3D G3DSA:3.40.50.1450 4 157 2.4E-46 T 13-10-2018 IPR023430 Peptidase HybD-like domain superfamily RAM_19295 71b8097db15e796ce52af4d2b2941e38 161 SUPERFAMILY SSF53163 4 149 4.45E-37 T 13-10-2018 IPR023430 Peptidase HybD-like domain superfamily RAM_25815 e4161f0f2706fc3beb90dfe818d01ba6 444 SUPERFAMILY SSF51658 55 329 1.04E-29 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily RAM_25815 e4161f0f2706fc3beb90dfe818d01ba6 444 Pfam PF01261 Xylose isomerase-like TIM barrel 65 232 6.1E-19 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain RAM_25815 e4161f0f2706fc3beb90dfe818d01ba6 444 Gene3D G3DSA:3.20.20.150 34 305 4.1E-42 T 13-10-2018 RAM_20800 de41685894207c9622d660d86b80ca42 295 SMART SM00422 16 85 3.4E-7 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_20800 de41685894207c9622d660d86b80ca42 295 Gene3D G3DSA:1.10.1660.10 11 85 2.9E-18 T 13-10-2018 RAM_20800 de41685894207c9622d660d86b80ca42 295 Gene3D G3DSA:1.10.1240.10 94 168 1.8E-5 T 13-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_20800 de41685894207c9622d660d86b80ca42 295 SUPERFAMILY SSF52242 175 262 1.02E-9 T 13-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 RAM_20800 de41685894207c9622d660d86b80ca42 295 Pfam PF13411 MerR HTH family regulatory protein 17 74 2.7E-11 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_20800 de41685894207c9622d660d86b80ca42 295 Gene3D G3DSA:3.40.50.280 176 283 2.5E-15 T 13-10-2018 RAM_20800 de41685894207c9622d660d86b80ca42 295 SUPERFAMILY SSF46955 16 82 5.95E-12 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily RAM_13715 f27ac5b26a769267f190bd3de1f50f16 475 SUPERFAMILY SSF55424 352 469 3.95E-30 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RAM_13715 f27ac5b26a769267f190bd3de1f50f16 475 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 12 333 1.5E-59 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAM_13715 f27ac5b26a769267f190bd3de1f50f16 475 PIRSF PIRSF000350 2 472 1.4E-77 T 13-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 RAM_13715 f27ac5b26a769267f190bd3de1f50f16 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 298 320 1.3E-33 T 13-10-2018 RAM_13715 f27ac5b26a769267f190bd3de1f50f16 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 185 203 1.3E-33 T 13-10-2018 RAM_13715 f27ac5b26a769267f190bd3de1f50f16 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 14 33 1.3E-33 T 13-10-2018 RAM_13715 f27ac5b26a769267f190bd3de1f50f16 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 146 164 1.3E-33 T 13-10-2018 RAM_13715 f27ac5b26a769267f190bd3de1f50f16 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 269 285 1.3E-33 T 13-10-2018 RAM_13715 f27ac5b26a769267f190bd3de1f50f16 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 435 455 9.7E-57 T 13-10-2018 RAM_13715 f27ac5b26a769267f190bd3de1f50f16 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 149 158 9.7E-57 T 13-10-2018 RAM_13715 f27ac5b26a769267f190bd3de1f50f16 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 313 320 9.7E-57 T 13-10-2018 RAM_13715 f27ac5b26a769267f190bd3de1f50f16 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 348 369 9.7E-57 T 13-10-2018 RAM_13715 f27ac5b26a769267f190bd3de1f50f16 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 185 210 9.7E-57 T 13-10-2018 RAM_13715 f27ac5b26a769267f190bd3de1f50f16 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 13 35 9.7E-57 T 13-10-2018 RAM_13715 f27ac5b26a769267f190bd3de1f50f16 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 270 284 9.7E-57 T 13-10-2018 RAM_13715 f27ac5b26a769267f190bd3de1f50f16 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 46 61 9.7E-57 T 13-10-2018 RAM_13715 f27ac5b26a769267f190bd3de1f50f16 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 413 428 9.7E-57 T 13-10-2018 RAM_13715 f27ac5b26a769267f190bd3de1f50f16 475 Gene3D G3DSA:3.30.390.30 353 470 6.6E-29 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RAM_13715 f27ac5b26a769267f190bd3de1f50f16 475 SUPERFAMILY SSF51905 9 342 1.21E-55 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_13715 f27ac5b26a769267f190bd3de1f50f16 475 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 353 460 2.9E-25 T 13-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RAM_13715 f27ac5b26a769267f190bd3de1f50f16 475 Gene3D G3DSA:3.50.50.60 165 283 8.1E-100 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_13715 f27ac5b26a769267f190bd3de1f50f16 475 Gene3D G3DSA:3.50.50.60 12 338 8.1E-100 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_08405 414b8a1b53989261aaddd1c4744328ff 319 Gene3D G3DSA:3.40.50.1220 189 319 3.6E-56 T 13-10-2018 RAM_08405 414b8a1b53989261aaddd1c4744328ff 319 Gene3D G3DSA:3.40.50.620 2 186 2.5E-38 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAM_08405 414b8a1b53989261aaddd1c4744328ff 319 SUPERFAMILY SSF52402 4 178 1.88E-41 T 13-10-2018 RAM_08405 414b8a1b53989261aaddd1c4744328ff 319 PIRSF PIRSF000089 1 319 3.7E-102 T 13-10-2018 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 RAM_08405 414b8a1b53989261aaddd1c4744328ff 319 SUPERFAMILY SSF52467 192 313 4.78E-47 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily RAM_08405 414b8a1b53989261aaddd1c4744328ff 319 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 258 284 - T 13-10-2018 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site Reactome: R-HSA-611105 RAM_08405 414b8a1b53989261aaddd1c4744328ff 319 SMART SM00893 4 186 1.6E-31 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 RAM_08405 414b8a1b53989261aaddd1c4744328ff 319 Pfam PF01012 Electron transfer flavoprotein domain 4 175 4.5E-33 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 RAM_08405 414b8a1b53989261aaddd1c4744328ff 319 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 195 277 4.3E-36 T 13-10-2018 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 RAM_03085 f78b97d44919ff22a555df2c7a4a2348 278 Pfam PF02405 Permease MlaE 61 263 1.8E-58 T 13-10-2018 IPR030802 ABC transporter permease MalE GO:0043190 RAM_41840 39d32fa984ed7a046f08c2f492914a7c 607 Gene3D G3DSA:3.40.50.300 338 602 1.1E-77 T 13-10-2018 RAM_41840 39d32fa984ed7a046f08c2f492914a7c 607 Pfam PF00005 ABC transporter 367 528 2.4E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_41840 39d32fa984ed7a046f08c2f492914a7c 607 SMART SM00382 376 575 4.0E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_41840 39d32fa984ed7a046f08c2f492914a7c 607 SUPERFAMILY SSF52540 342 599 6.21E-72 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_41840 39d32fa984ed7a046f08c2f492914a7c 607 Gene3D G3DSA:1.20.1560.10 27 329 2.5E-14 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RAM_41840 39d32fa984ed7a046f08c2f492914a7c 607 ProSitePatterns PS00211 ABC transporters family signature. 500 514 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_41840 39d32fa984ed7a046f08c2f492914a7c 607 SUPERFAMILY SSF90123 24 317 8.24E-22 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RAM_26890 6f5836ebf037f628a2978adcacff5135 252 Pfam PF01965 DJ-1/PfpI family 24 190 3.2E-26 T 13-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 RAM_26890 6f5836ebf037f628a2978adcacff5135 252 Gene3D G3DSA:3.40.50.880 6 233 1.3E-67 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_26890 6f5836ebf037f628a2978adcacff5135 252 SUPERFAMILY SSF52317 24 213 7.13E-48 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_01710 61466a5837fe8038a9756515ff484014 855 SUPERFAMILY SSF56112 225 433 3.78E-24 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_01710 61466a5837fe8038a9756515ff484014 855 SUPERFAMILY SSF158745 517 839 2.35E-17 T 13-10-2018 RAM_01710 61466a5837fe8038a9756515ff484014 855 SMART SM00220 225 514 1.3E-5 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_01710 61466a5837fe8038a9756515ff484014 855 SMART SM01260 522 844 0.0014 T 13-10-2018 IPR007822 Lanthionine synthetase C-like RAM_01710 61466a5837fe8038a9756515ff484014 855 Gene3D G3DSA:3.30.200.20 218 311 3.8E-19 T 13-10-2018 RAM_01710 61466a5837fe8038a9756515ff484014 855 Gene3D G3DSA:1.10.510.10 312 409 3.8E-19 T 13-10-2018 RAM_01710 61466a5837fe8038a9756515ff484014 855 Pfam PF00069 Protein kinase domain 245 407 2.6E-12 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_24525 a32a7006dd5d78d296311210f8c206a9 343 SUPERFAMILY SSF53474 26 340 7.64E-21 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_24525 a32a7006dd5d78d296311210f8c206a9 343 Gene3D G3DSA:3.40.50.1820 48 341 7.5E-23 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_24525 a32a7006dd5d78d296311210f8c206a9 343 Pfam PF12697 Alpha/beta hydrolase family 67 324 1.7E-12 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_25180 f1fd69f07217498b56b81f8261c20952 140 Pfam PF03061 Thioesterase superfamily 23 107 1.5E-14 T 13-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 RAM_25180 f1fd69f07217498b56b81f8261c20952 140 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 12 123 1.0E-22 T 13-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 RAM_25180 f1fd69f07217498b56b81f8261c20952 140 PIRSF PIRSF003230 3 140 1.8E-25 T 13-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 RAM_25180 f1fd69f07217498b56b81f8261c20952 140 SUPERFAMILY SSF54637 9 138 2.07E-36 T 13-10-2018 IPR029069 HotDog domain superfamily RAM_25180 f1fd69f07217498b56b81f8261c20952 140 Gene3D G3DSA:3.10.129.10 2 138 1.0E-34 T 13-10-2018 RAM_28345 7f2b558b4426b28ad16360f29ad68fe9 588 Gene3D G3DSA:3.40.50.300 1 80 2.5E-8 T 13-10-2018 RAM_28345 7f2b558b4426b28ad16360f29ad68fe9 588 SUPERFAMILY SSF52540 19 188 8.69E-15 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_28345 7f2b558b4426b28ad16360f29ad68fe9 588 Pfam PF00931 NB-ARC domain 23 189 3.0E-6 T 13-10-2018 IPR002182 NB-ARC GO:0043531 Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-6798695|Reactome: R-HSA-6803207|Reactome: R-HSA-8953750 RAM_28345 7f2b558b4426b28ad16360f29ad68fe9 588 Gene3D G3DSA:1.25.40.10 313 579 6.1E-51 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_28345 7f2b558b4426b28ad16360f29ad68fe9 588 Pfam PF13424 Tetratricopeptide repeat 456 526 9.9E-11 T 13-10-2018 RAM_28345 7f2b558b4426b28ad16360f29ad68fe9 588 Pfam PF13424 Tetratricopeptide repeat 374 446 2.8E-11 T 13-10-2018 RAM_28345 7f2b558b4426b28ad16360f29ad68fe9 588 SUPERFAMILY SSF48452 364 570 3.89E-30 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_28345 7f2b558b4426b28ad16360f29ad68fe9 588 SMART SM00028 374 407 0.9 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_28345 7f2b558b4426b28ad16360f29ad68fe9 588 SMART SM00028 534 567 1.2 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_28345 7f2b558b4426b28ad16360f29ad68fe9 588 SMART SM00028 414 447 12.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_28345 7f2b558b4426b28ad16360f29ad68fe9 588 SMART SM00028 454 487 0.0031 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_28345 7f2b558b4426b28ad16360f29ad68fe9 588 SMART SM00028 494 527 0.58 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_20180 f04a48123baca87729d437fc68529e95 402 Pfam PF00067 Cytochrome P450 209 374 9.7E-21 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_20180 f04a48123baca87729d437fc68529e95 402 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 346 355 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RAM_20180 f04a48123baca87729d437fc68529e95 402 Gene3D G3DSA:1.10.630.10 2 402 6.7E-111 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_20180 f04a48123baca87729d437fc68529e95 402 SUPERFAMILY SSF48264 12 401 7.86E-78 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_20180 f04a48123baca87729d437fc68529e95 402 PRINTS PR00359 B-class P450 signature 99 110 1.4E-46 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_20180 f04a48123baca87729d437fc68529e95 402 PRINTS PR00359 B-class P450 signature 272 283 1.4E-46 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_20180 f04a48123baca87729d437fc68529e95 402 PRINTS PR00359 B-class P450 signature 290 317 1.4E-46 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_20180 f04a48123baca87729d437fc68529e95 402 PRINTS PR00359 B-class P450 signature 143 159 1.4E-46 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_20180 f04a48123baca87729d437fc68529e95 402 PRINTS PR00359 B-class P450 signature 195 217 1.4E-46 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_20180 f04a48123baca87729d437fc68529e95 402 PRINTS PR00359 B-class P450 signature 160 175 1.4E-46 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_20180 f04a48123baca87729d437fc68529e95 402 PRINTS PR00359 B-class P450 signature 353 364 1.4E-46 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_20180 f04a48123baca87729d437fc68529e95 402 PRINTS PR00359 B-class P450 signature 344 353 1.4E-46 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_20180 f04a48123baca87729d437fc68529e95 402 PRINTS PR00359 B-class P450 signature 318 333 1.4E-46 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_12490 a50e9a4c1e224ae9811c9dae6eae51d0 255 PIRSF PIRSF017388 2 249 1.5E-65 T 13-10-2018 IPR012354 Esterase/lipase GO:0052689 RAM_12490 a50e9a4c1e224ae9811c9dae6eae51d0 255 Pfam PF12146 Serine aminopeptidase, S33 21 231 5.2E-20 T 13-10-2018 IPR022742 Serine aminopeptidase, S33 RAM_12490 a50e9a4c1e224ae9811c9dae6eae51d0 255 SUPERFAMILY SSF53474 19 246 1.5E-35 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_12490 a50e9a4c1e224ae9811c9dae6eae51d0 255 Gene3D G3DSA:3.40.50.1820 2 249 1.3E-54 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_22760 b5c66ba918b859ebe9b84d13daae22de 1193 SUPERFAMILY SSF49303 444 551 1.47E-22 T 13-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily RAM_22760 b5c66ba918b859ebe9b84d13daae22de 1193 Pfam PF00703 Glycosyl hydrolases family 2 448 551 1.0E-10 T 13-10-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RAM_22760 b5c66ba918b859ebe9b84d13daae22de 1193 Gene3D G3DSA:2.60.40.10 1001 1105 3.1E-20 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_22760 b5c66ba918b859ebe9b84d13daae22de 1193 SUPERFAMILY SSF49785 233 441 3.77E-35 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_22760 b5c66ba918b859ebe9b84d13daae22de 1193 SUPERFAMILY SSF49303 1002 1099 1.34E-21 T 13-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily RAM_22760 b5c66ba918b859ebe9b84d13daae22de 1193 Gene3D G3DSA:2.60.120.260 47 204 4.6E-25 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_22760 b5c66ba918b859ebe9b84d13daae22de 1193 SUPERFAMILY SSF49785 612 698 2.84E-24 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_22760 b5c66ba918b859ebe9b84d13daae22de 1193 Gene3D G3DSA:2.60.40.10 1106 1192 4.3E-12 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_22760 b5c66ba918b859ebe9b84d13daae22de 1193 SUPERFAMILY SSF49303 1084 1190 2.45E-24 T 13-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily RAM_22760 b5c66ba918b859ebe9b84d13daae22de 1193 Gene3D G3DSA:2.60.120.260 231 442 9.6E-43 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_22760 b5c66ba918b859ebe9b84d13daae22de 1193 Gene3D G3DSA:2.60.40.10 445 551 1.8E-23 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_22760 b5c66ba918b859ebe9b84d13daae22de 1193 Gene3D G3DSA:3.20.20.80 699 999 2.9E-64 T 13-10-2018 RAM_22760 b5c66ba918b859ebe9b84d13daae22de 1193 Gene3D G3DSA:2.60.120.260 612 698 9.8E-10 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_22760 b5c66ba918b859ebe9b84d13daae22de 1193 SUPERFAMILY SSF49785 49 205 8.51E-17 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_22760 b5c66ba918b859ebe9b84d13daae22de 1193 SUPERFAMILY SSF51445 696 998 9.28E-58 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_22760 b5c66ba918b859ebe9b84d13daae22de 1193 Pfam PF00754 F5/8 type C domain 60 194 5.1E-11 T 13-10-2018 IPR000421 Coagulation factor 5/8 C-terminal domain RAM_22760 b5c66ba918b859ebe9b84d13daae22de 1193 Pfam PF00754 F5/8 type C domain 618 695 7.2E-22 T 13-10-2018 IPR000421 Coagulation factor 5/8 C-terminal domain RAM_24235 109ab767431b81ac7671275304f7c82f 513 PRINTS PR00145 Argininosuccinate lyase family signature 201 217 5.8E-22 T 13-10-2018 RAM_24235 109ab767431b81ac7671275304f7c82f 513 PRINTS PR00145 Argininosuccinate lyase family signature 150 170 5.8E-22 T 13-10-2018 RAM_24235 109ab767431b81ac7671275304f7c82f 513 PRINTS PR00145 Argininosuccinate lyase family signature 283 299 5.8E-22 T 13-10-2018 RAM_24235 109ab767431b81ac7671275304f7c82f 513 PRINTS PR00145 Argininosuccinate lyase family signature 239 263 5.8E-22 T 13-10-2018 RAM_24235 109ab767431b81ac7671275304f7c82f 513 PRINTS PR00145 Argininosuccinate lyase family signature 109 131 5.8E-22 T 13-10-2018 RAM_24235 109ab767431b81ac7671275304f7c82f 513 Pfam PF00206 Lyase 104 308 2.3E-28 T 13-10-2018 IPR022761 Fumarate lyase, N-terminal RAM_24235 109ab767431b81ac7671275304f7c82f 513 SUPERFAMILY SSF48557 41 413 1.13E-78 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 RAM_24235 109ab767431b81ac7671275304f7c82f 513 Gene3D G3DSA:1.20.200.10 127 457 1.3E-96 T 13-10-2018 RAM_24235 109ab767431b81ac7671275304f7c82f 513 Pfam PF14698 Argininosuccinate lyase C-terminal 372 421 3.2E-9 T 13-10-2018 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 RAM_24235 109ab767431b81ac7671275304f7c82f 513 PRINTS PR00149 Fumarate lyase superfamily signature 239 266 1.5E-15 T 13-10-2018 IPR000362 Fumarate lyase family RAM_24235 109ab767431b81ac7671275304f7c82f 513 PRINTS PR00149 Fumarate lyase superfamily signature 155 173 1.5E-15 T 13-10-2018 IPR000362 Fumarate lyase family RAM_24235 109ab767431b81ac7671275304f7c82f 513 PRINTS PR00149 Fumarate lyase superfamily signature 283 299 1.5E-15 T 13-10-2018 IPR000362 Fumarate lyase family RAM_24235 109ab767431b81ac7671275304f7c82f 513 PRINTS PR00149 Fumarate lyase superfamily signature 110 128 1.5E-15 T 13-10-2018 IPR000362 Fumarate lyase family RAM_24235 109ab767431b81ac7671275304f7c82f 513 Gene3D G3DSA:1.10.275.10 44 237 1.3E-96 T 13-10-2018 IPR024083 Fumarase/histidase, N-terminal RAM_24235 109ab767431b81ac7671275304f7c82f 513 Gene3D G3DSA:1.10.40.30 369 446 1.3E-96 T 13-10-2018 RAM_12130 917caeee7b186d3aa6e1446974f6360e 303 SUPERFAMILY SSF52540 9 148 4.44E-16 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_12130 917caeee7b186d3aa6e1446974f6360e 303 Gene3D G3DSA:3.40.50.300 11 287 2.7E-90 T 13-10-2018 RAM_12130 917caeee7b186d3aa6e1446974f6360e 303 Pfam PF01715 IPP transferase 40 283 5.5E-75 T 13-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 RAM_12130 917caeee7b186d3aa6e1446974f6360e 303 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 7 303 27.083 T 13-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 RAM_12130 917caeee7b186d3aa6e1446974f6360e 303 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 8 290 5.6E-76 T 13-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 RAM_12130 917caeee7b186d3aa6e1446974f6360e 303 Gene3D G3DSA:1.10.20.140 114 183 2.7E-90 T 13-10-2018 RAM_02980 2db1fb58157584f4d61385b5a9fe1310 800 SUPERFAMILY SSF88697 7 200 1.49E-18 T 13-10-2018 IPR015947 PUA-like superfamily RAM_02980 2db1fb58157584f4d61385b5a9fe1310 800 Gene3D G3DSA:1.10.8.60 500 594 2.6E-25 T 13-10-2018 RAM_02980 2db1fb58157584f4d61385b5a9fe1310 800 SUPERFAMILY SSF52540 308 565 7.98E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_02980 2db1fb58157584f4d61385b5a9fe1310 800 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 7 200 1.9E-21 T 13-10-2018 IPR003111 Lon, substrate-binding domain RAM_02980 2db1fb58157584f4d61385b5a9fe1310 800 Gene3D G3DSA:3.30.230.10 603 797 2.5E-75 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RAM_02980 2db1fb58157584f4d61385b5a9fe1310 800 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 580 790 1.3E-78 T 13-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 RAM_02980 2db1fb58157584f4d61385b5a9fe1310 800 Gene3D G3DSA:1.20.58.1480 126 246 9.8E-22 T 13-10-2018 RAM_02980 2db1fb58157584f4d61385b5a9fe1310 800 SMART SM00464 6 203 5.9E-20 T 13-10-2018 IPR003111 Lon, substrate-binding domain RAM_02980 2db1fb58157584f4d61385b5a9fe1310 800 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 362 497 5.5E-20 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RAM_02980 2db1fb58157584f4d61385b5a9fe1310 800 TIGRFAM TIGR00763 lon: endopeptidase La 8 789 8.5E-248 T 13-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 RAM_02980 2db1fb58157584f4d61385b5a9fe1310 800 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 694 702 - T 13-10-2018 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 RAM_02980 2db1fb58157584f4d61385b5a9fe1310 800 Hamap MF_01973 Lon protease [lon]. 7 790 58.39 T 13-10-2018 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 RAM_02980 2db1fb58157584f4d61385b5a9fe1310 800 Gene3D G3DSA:2.30.130.40 4 113 7.0E-13 T 13-10-2018 RAM_02980 2db1fb58157584f4d61385b5a9fe1310 800 PIRSF PIRSF001174 1 792 2.0E-254 T 13-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 RAM_02980 2db1fb58157584f4d61385b5a9fe1310 800 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 365 384 3.4E-51 T 13-10-2018 RAM_02980 2db1fb58157584f4d61385b5a9fe1310 800 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 691 710 3.4E-51 T 13-10-2018 RAM_02980 2db1fb58157584f4d61385b5a9fe1310 800 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 610 626 3.4E-51 T 13-10-2018 RAM_02980 2db1fb58157584f4d61385b5a9fe1310 800 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 721 740 3.4E-51 T 13-10-2018 RAM_02980 2db1fb58157584f4d61385b5a9fe1310 800 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 744 762 3.4E-51 T 13-10-2018 RAM_02980 2db1fb58157584f4d61385b5a9fe1310 800 Gene3D G3DSA:3.40.50.300 314 499 4.2E-61 T 13-10-2018 RAM_02980 2db1fb58157584f4d61385b5a9fe1310 800 SUPERFAMILY SSF54211 610 788 1.1E-52 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RAM_02980 2db1fb58157584f4d61385b5a9fe1310 800 SMART SM00382 357 510 6.9E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_26615 0b0594c0a6c7eb680eba350c4da9496c 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.9E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_26615 0b0594c0a6c7eb680eba350c4da9496c 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.9E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_26615 0b0594c0a6c7eb680eba350c4da9496c 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.9E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_26615 0b0594c0a6c7eb680eba350c4da9496c 292 SUPERFAMILY SSF46785 2 84 4.74E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_26615 0b0594c0a6c7eb680eba350c4da9496c 292 Pfam PF03466 LysR substrate binding domain 87 289 3.2E-37 T 13-10-2018 IPR005119 LysR, substrate-binding RAM_26615 0b0594c0a6c7eb680eba350c4da9496c 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 2.1E-19 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_26615 0b0594c0a6c7eb680eba350c4da9496c 292 SUPERFAMILY SSF53850 88 290 3.84E-34 T 13-10-2018 RAM_26615 0b0594c0a6c7eb680eba350c4da9496c 292 Gene3D G3DSA:3.40.190.10 88 287 3.8E-52 T 13-10-2018 RAM_26615 0b0594c0a6c7eb680eba350c4da9496c 292 Gene3D G3DSA:3.40.190.10 162 268 3.8E-52 T 13-10-2018 RAM_26615 0b0594c0a6c7eb680eba350c4da9496c 292 Gene3D G3DSA:1.10.10.10 1 85 1.5E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_06570 7aa561944fc06cd273506427263f8e15 610 SUPERFAMILY SSF52279 406 605 2.22E-50 T 13-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 RAM_06570 7aa561944fc06cd273506427263f8e15 610 Gene3D G3DSA:3.40.50.1700 391 607 3.1E-73 T 13-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 RAM_06570 7aa561944fc06cd273506427263f8e15 610 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 52 367 2.8E-80 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_06570 7aa561944fc06cd273506427263f8e15 610 Gene3D G3DSA:3.20.20.300 26 389 6.3E-138 T 13-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 RAM_06570 7aa561944fc06cd273506427263f8e15 610 SUPERFAMILY SSF51445 31 404 8.11E-115 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_06570 7aa561944fc06cd273506427263f8e15 610 PRINTS PR00133 Glycosyl hydrolase family 3 signature 112 128 5.3E-24 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_06570 7aa561944fc06cd273506427263f8e15 610 PRINTS PR00133 Glycosyl hydrolase family 3 signature 136 155 5.3E-24 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_06570 7aa561944fc06cd273506427263f8e15 610 PRINTS PR00133 Glycosyl hydrolase family 3 signature 288 306 5.3E-24 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_06570 7aa561944fc06cd273506427263f8e15 610 PRINTS PR00133 Glycosyl hydrolase family 3 signature 182 198 5.3E-24 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_06570 7aa561944fc06cd273506427263f8e15 610 PRINTS PR00133 Glycosyl hydrolase family 3 signature 218 234 5.3E-24 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_06570 7aa561944fc06cd273506427263f8e15 610 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 406 605 1.5E-41 T 13-10-2018 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 RAM_06570 7aa561944fc06cd273506427263f8e15 610 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 288 305 - T 13-10-2018 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 RAM_04490 a4666693e90bce853ec3a2c06dda364b 288 Gene3D G3DSA:3.40.605.10 2 288 9.0E-51 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RAM_04490 a4666693e90bce853ec3a2c06dda364b 288 SUPERFAMILY SSF53720 7 254 6.54E-42 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RAM_04490 a4666693e90bce853ec3a2c06dda364b 288 Pfam PF00171 Aldehyde dehydrogenase family 29 255 1.2E-37 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RAM_24785 79a4c8a1c839c2c2cce1f7d8b9a9528c 344 Gene3D G3DSA:3.40.50.1110 29 320 1.6E-52 T 13-10-2018 IPR036514 SGNH hydrolase superfamily RAM_24785 79a4c8a1c839c2c2cce1f7d8b9a9528c 344 SUPERFAMILY SSF52266 31 318 3.33E-41 T 13-10-2018 RAM_24785 79a4c8a1c839c2c2cce1f7d8b9a9528c 344 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 36 309 8.7E-19 T 13-10-2018 IPR013830 SGNH hydrolase-type esterase domain RAM_13895 5fbbf277fe5bf545d611a6860bd33648 395 ProSitePatterns PS00787 Chorismate synthase signature 1. 8 23 - T 13-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 RAM_13895 5fbbf277fe5bf545d611a6860bd33648 395 SUPERFAMILY SSF103263 1 392 4.71E-132 T 13-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 RAM_13895 5fbbf277fe5bf545d611a6860bd33648 395 Hamap MF_00300 Chorismate synthase [aroC]. 2 376 34.317 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 RAM_13895 5fbbf277fe5bf545d611a6860bd33648 395 TIGRFAM TIGR00033 aroC: chorismate synthase 2 374 1.8E-122 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 RAM_13895 5fbbf277fe5bf545d611a6860bd33648 395 PIRSF PIRSF001456 1 389 1.5E-124 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 RAM_13895 5fbbf277fe5bf545d611a6860bd33648 395 Gene3D G3DSA:3.60.150.10 1 395 6.5E-154 T 13-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 RAM_13895 5fbbf277fe5bf545d611a6860bd33648 395 ProSitePatterns PS00789 Chorismate synthase signature 3. 343 359 - T 13-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 RAM_13895 5fbbf277fe5bf545d611a6860bd33648 395 ProSitePatterns PS00788 Chorismate synthase signature 2. 134 150 - T 13-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 RAM_13895 5fbbf277fe5bf545d611a6860bd33648 395 Pfam PF01264 Chorismate synthase 2 369 1.6E-113 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 RAM_03090 3cb1ca04534a28b36ac64d4ce1c7567d 441 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 9 292 3.0E-60 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_03090 3cb1ca04534a28b36ac64d4ce1c7567d 441 Pfam PF11887 Cholesterol uptake porter CUP1 of Mce4, putative 143 430 1.8E-75 T 13-10-2018 IPR024516 Mammalian cell entry, C-terminal RAM_03090 3cb1ca04534a28b36ac64d4ce1c7567d 441 Pfam PF02470 MlaD protein 36 111 6.4E-10 T 13-10-2018 IPR003399 Mce/MlaD RAM_35735 0ae246131635c412a124d9500634a7f8 271 Pfam PF08223 PaaX-like protein C-terminal domain 178 266 2.6E-17 T 13-10-2018 IPR013225 PaaX-like, C-terminal RAM_35735 0ae246131635c412a124d9500634a7f8 271 PIRSF PIRSF020623 4 271 5.5E-57 T 13-10-2018 IPR011965 Phenylacetic acid degradation operon negative regulatory protein PaaX GO:0006351 RAM_35735 0ae246131635c412a124d9500634a7f8 271 Pfam PF07848 PaaX-like protein 11 78 8.8E-17 T 13-10-2018 IPR012906 PaaX-like, N-terminal RAM_35735 0ae246131635c412a124d9500634a7f8 271 Gene3D G3DSA:1.10.10.10 9 92 2.3E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_35735 0ae246131635c412a124d9500634a7f8 271 SUPERFAMILY SSF46785 40 127 6.22E-7 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_24205 156a9be1ce962d8d179b8e02f15ca454 358 SUPERFAMILY SSF56752 5 343 5.23E-94 T 13-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 RAM_24205 156a9be1ce962d8d179b8e02f15ca454 358 ProSitePatterns PS00770 Aminotransferases class-IV signature. 218 251 - T 13-10-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824 Reactome: R-HSA-70895 RAM_24205 156a9be1ce962d8d179b8e02f15ca454 358 Gene3D G3DSA:3.20.10.10 156 329 1.7E-114 T 13-10-2018 RAM_24205 156a9be1ce962d8d179b8e02f15ca454 358 TIGRFAM TIGR01123 ilvE_II: branched-chain amino acid aminotransferase 29 344 6.3E-102 T 13-10-2018 IPR005786 Branched-chain amino acid aminotransferase II GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767|Reactome: R-HSA-70895 RAM_24205 156a9be1ce962d8d179b8e02f15ca454 358 Pfam PF01063 Amino-transferase class IV 55 301 3.1E-23 T 13-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 RAM_24205 156a9be1ce962d8d179b8e02f15ca454 358 PIRSF PIRSF006468 2 348 6.4E-109 T 13-10-2018 IPR005786 Branched-chain amino acid aminotransferase II GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767|Reactome: R-HSA-70895 RAM_24205 156a9be1ce962d8d179b8e02f15ca454 358 Gene3D G3DSA:3.30.470.10 11 342 1.7E-114 T 13-10-2018 RAM_44840 62dcc6b05739e3cae4f3f9a853968838 301 SUPERFAMILY SSF48179 176 272 1.77E-25 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RAM_44840 62dcc6b05739e3cae4f3f9a853968838 301 Pfam PF10727 Rossmann-like domain 3 123 7.1E-47 T 13-10-2018 IPR019665 Putative oxidoreductase/dehydrogenase, Rossmann-like domain RAM_44840 62dcc6b05739e3cae4f3f9a853968838 301 Pfam PF10728 Domain of unknown function (DUF2520) 146 269 4.5E-40 T 13-10-2018 IPR018931 Domain of unknown function DUF2520 RAM_44840 62dcc6b05739e3cae4f3f9a853968838 301 SUPERFAMILY SSF51735 9 173 7.71E-25 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_44840 62dcc6b05739e3cae4f3f9a853968838 301 Gene3D G3DSA:1.10.1040.20 175 274 6.6E-18 T 13-10-2018 IPR037108 TM1727-like, C-terminal domain superfamily RAM_44840 62dcc6b05739e3cae4f3f9a853968838 301 Gene3D G3DSA:3.40.50.720 6 173 2.6E-34 T 13-10-2018 RAM_38060 0528d684a34c41623366a0a03d353460 436 Pfam PF01593 Flavin containing amine oxidoreductase 16 364 2.1E-34 T 13-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 RAM_38060 0528d684a34c41623366a0a03d353460 436 SUPERFAMILY SSF51905 8 307 1.77E-40 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_38060 0528d684a34c41623366a0a03d353460 436 PRINTS PR00419 Adrenodoxin reductase family signature 8 30 1.3E-5 T 13-10-2018 RAM_38060 0528d684a34c41623366a0a03d353460 436 PRINTS PR00419 Adrenodoxin reductase family signature 31 44 1.3E-5 T 13-10-2018 RAM_38060 0528d684a34c41623366a0a03d353460 436 Gene3D G3DSA:3.90.660.50 87 368 2.1E-34 T 13-10-2018 RAM_38060 0528d684a34c41623366a0a03d353460 436 Gene3D G3DSA:3.50.50.60 11 273 2.1E-34 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_40930 b63c9b73ead39be09d0df621b594062d 144 SUPERFAMILY SSF46785 9 141 3.94E-25 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_40930 b63c9b73ead39be09d0df621b594062d 144 SMART SM00347 32 136 2.2E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_40930 b63c9b73ead39be09d0df621b594062d 144 Gene3D G3DSA:1.10.10.10 11 143 1.2E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_40930 b63c9b73ead39be09d0df621b594062d 144 Pfam PF01047 MarR family 39 100 3.0E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_36640 e5528ebed3bc5a08a3d51a8d175d4f15 475 Gene3D G3DSA:3.40.605.10 22 466 8.3E-164 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RAM_36640 e5528ebed3bc5a08a3d51a8d175d4f15 475 Pfam PF00171 Aldehyde dehydrogenase family 17 471 8.5E-158 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RAM_36640 e5528ebed3bc5a08a3d51a8d175d4f15 475 Gene3D G3DSA:3.40.309.10 249 440 8.3E-164 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RAM_36640 e5528ebed3bc5a08a3d51a8d175d4f15 475 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 273 284 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 RAM_36640 e5528ebed3bc5a08a3d51a8d175d4f15 475 SUPERFAMILY SSF53720 4 474 3.53E-153 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RAM_36640 e5528ebed3bc5a08a3d51a8d175d4f15 475 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 245 252 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 RAM_09070 f4f80d9fe8dc945a15870da845986418 704 Gene3D G3DSA:3.40.50.300 640 701 2.6E-8 T 13-10-2018 RAM_09070 f4f80d9fe8dc945a15870da845986418 704 Pfam PF13245 AAA domain 196 527 5.3E-9 T 13-10-2018 RAM_09070 f4f80d9fe8dc945a15870da845986418 704 Pfam PF13538 UvrD-like helicase C-terminal domain 653 693 6.3E-9 T 13-10-2018 IPR027785 UvrD-like helicase C-terminal domain RAM_09070 f4f80d9fe8dc945a15870da845986418 704 Gene3D G3DSA:3.40.50.300 472 574 2.5E-10 T 13-10-2018 RAM_09070 f4f80d9fe8dc945a15870da845986418 704 Gene3D G3DSA:3.40.50.300 179 380 2.3E-8 T 13-10-2018 RAM_09070 f4f80d9fe8dc945a15870da845986418 704 SUPERFAMILY SSF52540 183 699 1.35E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_20280 8eab0d85168f9e4726015861f0d86ee2 381 SUPERFAMILY SSF55347 143 306 7.52E-37 T 13-10-2018 RAM_20280 8eab0d85168f9e4726015861f0d86ee2 381 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 9 128 8.1E-25 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 RAM_20280 8eab0d85168f9e4726015861f0d86ee2 381 SUPERFAMILY SSF51735 5 169 7.13E-48 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_20280 8eab0d85168f9e4726015861f0d86ee2 381 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 149 234 1.3E-10 T 13-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 RAM_20280 8eab0d85168f9e4726015861f0d86ee2 381 Gene3D G3DSA:3.30.360.10 142 378 1.1E-73 T 13-10-2018 RAM_20280 8eab0d85168f9e4726015861f0d86ee2 381 Gene3D G3DSA:3.40.50.720 4 141 3.0E-41 T 13-10-2018 RAM_05830 48c5d306526c6e9327661488c2c1f9b3 569 Pfam PF09972 Predicted membrane protein (DUF2207) 59 520 5.7E-42 T 13-10-2018 IPR018702 Protein of unknown function DUF2207, membrane RAM_06100 7b1d38411bc57280465e005d8159759f 360 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_06100 7b1d38411bc57280465e005d8159759f 360 SMART SM00382 51 234 2.8E-18 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_06100 7b1d38411bc57280465e005d8159759f 360 Pfam PF00005 ABC transporter 43 184 4.0E-35 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_06100 7b1d38411bc57280465e005d8159759f 360 Pfam PF08402 TOBE domain 279 353 7.6E-17 T 13-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 RAM_06100 7b1d38411bc57280465e005d8159759f 360 Gene3D G3DSA:3.40.50.300 20 261 5.4E-77 T 13-10-2018 RAM_06100 7b1d38411bc57280465e005d8159759f 360 SUPERFAMILY SSF52540 27 262 7.92E-87 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_06100 7b1d38411bc57280465e005d8159759f 360 SUPERFAMILY SSF50331 259 353 3.51E-9 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal RAM_07345 0b833406fc9aa8d64af6067c51a3ec38 165 SUPERFAMILY SSF88946 8 74 2.31E-10 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_07345 0b833406fc9aa8d64af6067c51a3ec38 165 Pfam PF08281 Sigma-70, region 4 95 147 7.6E-18 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_07345 0b833406fc9aa8d64af6067c51a3ec38 165 Gene3D G3DSA:1.10.10.10 76 155 5.5E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_07345 0b833406fc9aa8d64af6067c51a3ec38 165 Pfam PF04542 Sigma-70 region 2 9 64 5.0E-9 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_07345 0b833406fc9aa8d64af6067c51a3ec38 165 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 3 151 3.2E-21 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_07345 0b833406fc9aa8d64af6067c51a3ec38 165 SUPERFAMILY SSF88659 89 151 3.18E-17 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_07345 0b833406fc9aa8d64af6067c51a3ec38 165 Gene3D G3DSA:1.10.1740.10 3 70 2.4E-7 T 13-10-2018 RAM_07345 0b833406fc9aa8d64af6067c51a3ec38 165 TIGRFAM TIGR02983 SigE-fam_strep: RNA polymerase sigma-70 factor, sigma-E family 2 153 6.6E-47 T 13-10-2018 IPR014325 RNA polymerase sigma-E factor, actinobacteria GO:0016987 RAM_39590 a38ea936df90ef34698fdde6419ab56d 268 Gene3D G3DSA:3.40.50.1860 99 210 1.2E-89 T 13-10-2018 RAM_39590 a38ea936df90ef34698fdde6419ab56d 268 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 183 193 - T 13-10-2018 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RAM_39590 a38ea936df90ef34698fdde6419ab56d 268 Pfam PF01177 Asp/Glu/Hydantoin racemase 10 218 8.6E-33 T 13-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RAM_39590 a38ea936df90ef34698fdde6419ab56d 268 TIGRFAM TIGR00067 glut_race: glutamate racemase 10 256 7.3E-67 T 13-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RAM_39590 a38ea936df90ef34698fdde6419ab56d 268 Hamap MF_00258 Glutamate racemase [murI]. 8 259 36.156 T 13-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RAM_39590 a38ea936df90ef34698fdde6419ab56d 268 SUPERFAMILY SSF53681 9 111 1.37E-32 T 13-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RAM_39590 a38ea936df90ef34698fdde6419ab56d 268 SUPERFAMILY SSF53681 113 260 4.06E-38 T 13-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RAM_39590 a38ea936df90ef34698fdde6419ab56d 268 ProSitePatterns PS00923 Aspartate and glutamate racemases signature 1. 74 82 - T 13-10-2018 IPR018187 Asp/Glu racemase, active site 1 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RAM_39590 a38ea936df90ef34698fdde6419ab56d 268 Gene3D G3DSA:3.40.50.1860 9 257 1.2E-89 T 13-10-2018 RAM_42580 fb6785226125560a98406d47dad8f4bf 219 Gene3D G3DSA:1.10.10.10 7 107 8.1E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_42580 fb6785226125560a98406d47dad8f4bf 219 SUPERFAMILY SSF46785 7 109 1.25E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_42580 fb6785226125560a98406d47dad8f4bf 219 Pfam PF01638 HxlR-like helix-turn-helix 18 97 3.6E-17 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type RAM_42580 fb6785226125560a98406d47dad8f4bf 219 SUPERFAMILY SSF55718 109 205 2.06E-8 T 13-10-2018 IPR036527 SCP2 sterol-binding domain superfamily RAM_42580 fb6785226125560a98406d47dad8f4bf 219 Gene3D G3DSA:3.30.1050.10 108 211 2.0E-8 T 13-10-2018 IPR036527 SCP2 sterol-binding domain superfamily RAM_04725 b19a18ad980945cc270db463148342e0 577 Gene3D G3DSA:1.10.8.870 418 559 3.6E-32 T 13-10-2018 IPR038299 Alpha-glycerophosphate oxidase, C-terminal domain superfamily KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RAM_04725 b19a18ad980945cc270db463148342e0 577 Gene3D G3DSA:3.50.50.60 31 393 1.9E-128 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_04725 b19a18ad980945cc270db463148342e0 577 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 379 389 - T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RAM_04725 b19a18ad980945cc270db463148342e0 577 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 374 386 4.4E-32 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RAM_04725 b19a18ad980945cc270db463148342e0 577 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 30 42 4.4E-32 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RAM_04725 b19a18ad980945cc270db463148342e0 577 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 105 117 4.4E-32 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RAM_04725 b19a18ad980945cc270db463148342e0 577 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 59 71 4.4E-32 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RAM_04725 b19a18ad980945cc270db463148342e0 577 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 43 53 4.4E-32 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RAM_04725 b19a18ad980945cc270db463148342e0 577 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 344 350 4.4E-32 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RAM_04725 b19a18ad980945cc270db463148342e0 577 SUPERFAMILY SSF51905 29 354 6.91E-38 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_04725 b19a18ad980945cc270db463148342e0 577 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 407 531 4.3E-34 T 13-10-2018 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RAM_04725 b19a18ad980945cc270db463148342e0 577 Gene3D G3DSA:3.30.9.10 109 351 1.9E-128 T 13-10-2018 RAM_04725 b19a18ad980945cc270db463148342e0 577 ProSitePatterns PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1. 35 52 - T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RAM_04725 b19a18ad980945cc270db463148342e0 577 Pfam PF01266 FAD dependent oxidoreductase 31 354 8.2E-53 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RAM_22735 1bce525b08f9165fa9fb15cb0e553f88 384 Pfam PF13439 Glycosyltransferase Family 4 15 174 1.6E-29 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 RAM_22735 1bce525b08f9165fa9fb15cb0e553f88 384 Gene3D G3DSA:3.40.50.2000 171 360 3.9E-82 T 13-10-2018 RAM_22735 1bce525b08f9165fa9fb15cb0e553f88 384 SUPERFAMILY SSF53756 1 378 1.22E-85 T 13-10-2018 RAM_22735 1bce525b08f9165fa9fb15cb0e553f88 384 TIGRFAM TIGR02149 glgA_Coryne: glycogen synthase, Corynebacterium family 1 378 2.2E-173 T 13-10-2018 IPR011875 Alpha-maltose-1-phosphate synthase GO:0009250|GO:0016740 KEGG: 00500+2.4.1.342|MetaCyc: PWY-7900 RAM_22735 1bce525b08f9165fa9fb15cb0e553f88 384 Gene3D G3DSA:3.40.50.2000 6 377 3.9E-82 T 13-10-2018 RAM_22735 1bce525b08f9165fa9fb15cb0e553f88 384 Pfam PF00534 Glycosyl transferases group 1 186 358 1.1E-31 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 RAM_11965 eedeea138079192210ad73d74a4cb37e 638 SUPERFAMILY SSF46977 480 634 3.4E-40 T 13-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_11965 eedeea138079192210ad73d74a4cb37e 638 PIRSF PIRSF000171 1 604 1.5E-39 T 13-10-2018 RAM_11965 eedeea138079192210ad73d74a4cb37e 638 Gene3D G3DSA:3.50.50.60 10 440 9.5E-151 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_11965 eedeea138079192210ad73d74a4cb37e 638 SUPERFAMILY SSF56425 243 389 1.24E-33 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_11965 eedeea138079192210ad73d74a4cb37e 638 Gene3D G3DSA:1.20.58.100 473 573 6.8E-29 T 13-10-2018 RAM_11965 eedeea138079192210ad73d74a4cb37e 638 Pfam PF00890 FAD binding domain 10 429 1.0E-92 T 13-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_11965 eedeea138079192210ad73d74a4cb37e 638 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 11 30 4.9E-6 T 13-10-2018 RAM_11965 eedeea138079192210ad73d74a4cb37e 638 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 393 415 4.9E-6 T 13-10-2018 RAM_11965 eedeea138079192210ad73d74a4cb37e 638 SUPERFAMILY SSF51905 3 472 1.27E-73 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_11965 eedeea138079192210ad73d74a4cb37e 638 Gene3D G3DSA:3.90.700.10 253 395 9.5E-151 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_11965 eedeea138079192210ad73d74a4cb37e 638 Pfam PF02910 Fumarate reductase flavoprotein C-term 487 600 1.9E-23 T 13-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_26170 40783eb1d85d43cf7bd8e193016a9da0 375 PIRSF PIRSF001134 1 375 5.6E-120 T 13-10-2018 IPR001316 Peptidase S1A, streptogrisin GO:0004252|GO:0006508 RAM_26170 40783eb1d85d43cf7bd8e193016a9da0 375 Gene3D G3DSA:2.40.10.10 261 360 4.4E-66 T 13-10-2018 RAM_26170 40783eb1d85d43cf7bd8e193016a9da0 375 Gene3D G3DSA:3.30.300.50 28 108 1.3E-10 T 13-10-2018 IPR035070 Streptogrisin prodomain RAM_26170 40783eb1d85d43cf7bd8e193016a9da0 375 Gene3D G3DSA:3.30.300.50 111 183 5.4E-7 T 13-10-2018 IPR035070 Streptogrisin prodomain RAM_26170 40783eb1d85d43cf7bd8e193016a9da0 375 Gene3D G3DSA:2.40.10.10 192 371 4.4E-66 T 13-10-2018 RAM_26170 40783eb1d85d43cf7bd8e193016a9da0 375 SUPERFAMILY SSF50494 196 366 1.31E-34 T 13-10-2018 IPR009003 Peptidase S1, PA clan RAM_26170 40783eb1d85d43cf7bd8e193016a9da0 375 PRINTS PR00861 Alpha-lytic endopeptidase serine protease (S2A) signature 274 294 1.9E-38 T 13-10-2018 IPR001316 Peptidase S1A, streptogrisin GO:0004252|GO:0006508 RAM_26170 40783eb1d85d43cf7bd8e193016a9da0 375 PRINTS PR00861 Alpha-lytic endopeptidase serine protease (S2A) signature 295 312 1.9E-38 T 13-10-2018 IPR001316 Peptidase S1A, streptogrisin GO:0004252|GO:0006508 RAM_26170 40783eb1d85d43cf7bd8e193016a9da0 375 PRINTS PR00861 Alpha-lytic endopeptidase serine protease (S2A) signature 213 227 1.9E-38 T 13-10-2018 IPR001316 Peptidase S1A, streptogrisin GO:0004252|GO:0006508 RAM_26170 40783eb1d85d43cf7bd8e193016a9da0 375 PRINTS PR00861 Alpha-lytic endopeptidase serine protease (S2A) signature 338 352 1.9E-38 T 13-10-2018 IPR001316 Peptidase S1A, streptogrisin GO:0004252|GO:0006508 RAM_26170 40783eb1d85d43cf7bd8e193016a9da0 375 PRINTS PR00861 Alpha-lytic endopeptidase serine protease (S2A) signature 314 337 1.9E-38 T 13-10-2018 IPR001316 Peptidase S1A, streptogrisin GO:0004252|GO:0006508 RAM_26170 40783eb1d85d43cf7bd8e193016a9da0 375 Pfam PF02983 Alpha-lytic protease prodomain 113 172 2.3E-11 T 13-10-2018 IPR004236 Peptidase S1A, alpha-lytic prodomain GO:0005576|GO:0006508|GO:0008236 RAM_26170 40783eb1d85d43cf7bd8e193016a9da0 375 Pfam PF00089 Trypsin 280 365 1.5E-8 T 13-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 RAM_31445 14fdbefb9644efa00ad4dd8f3d9e52f1 308 SUPERFAMILY SSF50129 1 141 8.07E-36 T 13-10-2018 IPR011032 GroES-like superfamily RAM_31445 14fdbefb9644efa00ad4dd8f3d9e52f1 308 Pfam PF13602 Zinc-binding dehydrogenase 184 306 5.5E-31 T 13-10-2018 RAM_31445 14fdbefb9644efa00ad4dd8f3d9e52f1 308 SMART SM00829 10 306 1.3E-35 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_31445 14fdbefb9644efa00ad4dd8f3d9e52f1 308 SUPERFAMILY SSF51735 114 238 1.03E-39 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_31445 14fdbefb9644efa00ad4dd8f3d9e52f1 308 Gene3D G3DSA:3.40.50.720 125 257 2.0E-101 T 13-10-2018 RAM_31445 14fdbefb9644efa00ad4dd8f3d9e52f1 308 Gene3D G3DSA:3.90.180.10 9 305 2.0E-101 T 13-10-2018 RAM_31445 14fdbefb9644efa00ad4dd8f3d9e52f1 308 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 142 163 - T 13-10-2018 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 RAM_16260 91e3aca2c0f290b179592ce28febf869 361 Pfam PF00356 Bacterial regulatory proteins, lacI family 29 72 3.4E-15 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_16260 91e3aca2c0f290b179592ce28febf869 361 ProSitePatterns PS00356 LacI-type HTH domain signature. 30 48 - T 13-10-2018 RAM_16260 91e3aca2c0f290b179592ce28febf869 361 Gene3D G3DSA:1.10.260.40 27 80 5.6E-17 T 13-10-2018 RAM_16260 91e3aca2c0f290b179592ce28febf869 361 SUPERFAMILY SSF53822 99 342 1.35E-27 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_16260 91e3aca2c0f290b179592ce28febf869 361 Gene3D G3DSA:3.40.50.2300 183 313 3.6E-31 T 13-10-2018 RAM_16260 91e3aca2c0f290b179592ce28febf869 361 SUPERFAMILY SSF47413 27 73 1.63E-12 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_16260 91e3aca2c0f290b179592ce28febf869 361 SMART SM00354 27 94 9.6E-12 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_16260 91e3aca2c0f290b179592ce28febf869 361 Pfam PF13377 Periplasmic binding protein-like domain 192 351 5.7E-20 T 13-10-2018 RAM_16260 91e3aca2c0f290b179592ce28febf869 361 Gene3D G3DSA:3.40.50.2300 105 335 3.6E-31 T 13-10-2018 RAM_02720 5ddd68ecc84178aa04072cce87b02650 633 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 80 105 1.4E-64 T 13-10-2018 RAM_02720 5ddd68ecc84178aa04072cce87b02650 633 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 155 176 1.4E-64 T 13-10-2018 RAM_02720 5ddd68ecc84178aa04072cce87b02650 633 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 244 270 1.4E-64 T 13-10-2018 RAM_02720 5ddd68ecc84178aa04072cce87b02650 633 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 222 243 1.4E-64 T 13-10-2018 RAM_02720 5ddd68ecc84178aa04072cce87b02650 633 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 312 324 1.4E-64 T 13-10-2018 RAM_02720 5ddd68ecc84178aa04072cce87b02650 633 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 108 128 1.4E-64 T 13-10-2018 RAM_02720 5ddd68ecc84178aa04072cce87b02650 633 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 419 438 1.4E-64 T 13-10-2018 RAM_02720 5ddd68ecc84178aa04072cce87b02650 633 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 56 80 4.7E-11 T 13-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 RAM_02720 5ddd68ecc84178aa04072cce87b02650 633 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 262 284 4.7E-11 T 13-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 RAM_02720 5ddd68ecc84178aa04072cce87b02650 633 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 418 440 4.7E-11 T 13-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 RAM_02720 5ddd68ecc84178aa04072cce87b02650 633 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 82 102 4.7E-11 T 13-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 RAM_02720 5ddd68ecc84178aa04072cce87b02650 633 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 6 627 1.2E-220 T 13-10-2018 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_02720 5ddd68ecc84178aa04072cce87b02650 633 Pfam PF00361 Proton-conducting membrane transporter 132 421 3.1E-85 T 13-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_02720 5ddd68ecc84178aa04072cce87b02650 633 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 62 119 3.2E-24 T 13-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_19160 58603b36796f62626e170f12eef5325b 269 Gene3D G3DSA:3.20.20.80 98 267 3.6E-15 T 13-10-2018 RAM_19160 58603b36796f62626e170f12eef5325b 269 SUPERFAMILY SSF51445 69 265 1.34E-24 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_19160 58603b36796f62626e170f12eef5325b 269 Pfam PF11790 Glycosyl hydrolase catalytic core 51 254 3.3E-54 T 13-10-2018 IPR024655 Uncharacterised protein family, glycosyl hydrolase catalytic domain RAM_42075 c3068407804c2ce95427bbf438b044dd 317 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 125 316 2.4E-27 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_42075 c3068407804c2ce95427bbf438b044dd 317 SUPERFAMILY SSF161098 104 299 2.62E-23 T 13-10-2018 IPR035906 MetI-like superfamily RAM_42075 c3068407804c2ce95427bbf438b044dd 317 Gene3D G3DSA:1.10.3720.10 94 317 8.3E-23 T 13-10-2018 IPR035906 MetI-like superfamily RAM_42075 c3068407804c2ce95427bbf438b044dd 317 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 32 68 4.2E-9 T 13-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain RAM_03765 fc50eaa420bd4a31fd51be4a4f59b7de 278 SUPERFAMILY SSF100950 92 247 7.01E-25 T 13-10-2018 IPR037171 NagB/RpiA transferase-like RAM_03765 fc50eaa420bd4a31fd51be4a4f59b7de 278 SMART SM00420 23 75 2.8E-4 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RAM_03765 fc50eaa420bd4a31fd51be4a4f59b7de 278 SMART SM01134 90 248 1.3E-54 T 13-10-2018 RAM_03765 fc50eaa420bd4a31fd51be4a4f59b7de 278 SUPERFAMILY SSF46785 21 78 1.1E-7 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_03765 fc50eaa420bd4a31fd51be4a4f59b7de 278 Pfam PF00455 DeoR C terminal sensor domain 92 246 7.9E-41 T 13-10-2018 IPR014036 DeoR C-terminal sensor domain RAM_03765 fc50eaa420bd4a31fd51be4a4f59b7de 278 Pfam PF08220 DeoR-like helix-turn-helix domain 23 73 4.6E-8 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RAM_03765 fc50eaa420bd4a31fd51be4a4f59b7de 278 ProSitePatterns PS00894 DeoR-type HTH domain signature. 23 57 - T 13-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 RAM_24080 f809fa6ad921a3a49771dba7289fcb91 267 Pfam PF02585 GlcNAc-PI de-N-acetylase 9 140 9.9E-20 T 13-10-2018 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related Reactome: R-HSA-162710 RAM_24080 f809fa6ad921a3a49771dba7289fcb91 267 Gene3D G3DSA:3.40.50.10320 3 247 2.2E-42 T 13-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 RAM_24080 f809fa6ad921a3a49771dba7289fcb91 267 SUPERFAMILY SSF102588 6 228 3.66E-40 T 13-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 RAM_47195 a6dd8662fe2534ff1513cb3f9b0eade2 110 SUPERFAMILY SSF50129 11 98 3.46E-19 T 13-10-2018 IPR011032 GroES-like superfamily RAM_47195 a6dd8662fe2534ff1513cb3f9b0eade2 110 PRINTS PR00297 10kDa chaperonin signature 12 27 4.0E-9 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RAM_47195 a6dd8662fe2534ff1513cb3f9b0eade2 110 PRINTS PR00297 10kDa chaperonin signature 85 98 4.0E-9 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RAM_47195 a6dd8662fe2534ff1513cb3f9b0eade2 110 PRINTS PR00297 10kDa chaperonin signature 64 76 4.0E-9 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RAM_47195 a6dd8662fe2534ff1513cb3f9b0eade2 110 PRINTS PR00297 10kDa chaperonin signature 38 59 4.0E-9 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RAM_47195 a6dd8662fe2534ff1513cb3f9b0eade2 110 Pfam PF00166 Chaperonin 10 Kd subunit 12 97 8.6E-19 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RAM_47195 a6dd8662fe2534ff1513cb3f9b0eade2 110 Gene3D G3DSA:2.30.33.40 8 99 1.4E-15 T 13-10-2018 IPR037124 GroES chaperonin superfamily GO:0005737|GO:0006457 RAM_47195 a6dd8662fe2534ff1513cb3f9b0eade2 110 SMART SM00883 11 98 6.5E-27 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RAM_26425 0ec523ee143cc7d5b3003d2aa311ac40 397 SUPERFAMILY SSF48208 25 392 4.54E-94 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_26425 0ec523ee143cc7d5b3003d2aa311ac40 397 Gene3D G3DSA:1.50.10.10 4 396 1.5E-145 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 RAM_26425 0ec523ee143cc7d5b3003d2aa311ac40 397 Pfam PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) 30 377 1.8E-97 T 13-10-2018 RAM_43745 5ca939f0e38abc827dbb1179e1417a3f 462 SMART SM01274 92 225 7.1E-81 T 13-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RAM_43745 5ca939f0e38abc827dbb1179e1417a3f 462 SMART SM00919 237 459 3.1E-101 T 13-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 RAM_43745 5ca939f0e38abc827dbb1179e1417a3f 462 Gene3D G3DSA:3.40.50.720 235 462 2.6E-70 T 13-10-2018 RAM_43745 5ca939f0e38abc827dbb1179e1417a3f 462 SUPERFAMILY SSF51735 237 460 3.44E-67 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_43745 5ca939f0e38abc827dbb1179e1417a3f 462 SUPERFAMILY SSF53223 86 235 1.44E-54 T 13-10-2018 RAM_43745 5ca939f0e38abc827dbb1179e1417a3f 462 Gene3D G3DSA:3.40.50.10380 77 234 2.8E-69 T 13-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 RAM_43745 5ca939f0e38abc827dbb1179e1417a3f 462 PRINTS PR00072 Malic enzyme signature 233 249 4.3E-7 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RAM_43745 5ca939f0e38abc827dbb1179e1417a3f 462 PRINTS PR00072 Malic enzyme signature 154 176 4.3E-7 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RAM_43745 5ca939f0e38abc827dbb1179e1417a3f 462 PRINTS PR00072 Malic enzyme signature 264 280 4.3E-7 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RAM_43745 5ca939f0e38abc827dbb1179e1417a3f 462 Pfam PF00390 Malic enzyme, N-terminal domain 93 225 2.0E-27 T 13-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RAM_43745 5ca939f0e38abc827dbb1179e1417a3f 462 Pfam PF03949 Malic enzyme, NAD binding domain 239 456 1.3E-21 T 13-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 RAM_43745 5ca939f0e38abc827dbb1179e1417a3f 462 PIRSF PIRSF000106 32 462 2.1E-77 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RAM_19325 b34faf1bd845192212c8ce2c3e0c3441 353 Gene3D G3DSA:4.10.480.10 222 302 7.2E-27 T 13-10-2018 IPR037148 [NiFe]-hydrogenase, small subunit, C-terminal domain superfamily RAM_19325 b34faf1bd845192212c8ce2c3e0c3441 353 Pfam PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal 222 300 5.1E-25 T 13-10-2018 IPR027394 Cytochrome-c3 hydrogenase, C-terminal RAM_19325 b34faf1bd845192212c8ce2c3e0c3441 353 SUPERFAMILY SSF56770 15 301 1.79E-64 T 13-10-2018 RAM_19325 b34faf1bd845192212c8ce2c3e0c3441 353 Gene3D G3DSA:3.40.50.700 9 220 2.9E-51 T 13-10-2018 IPR037024 [NiFe]-hydrogenase, small subunit, N-terminal domain superfamily RAM_19325 b34faf1bd845192212c8ce2c3e0c3441 353 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 26 199 5.9E-25 T 13-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_19325 b34faf1bd845192212c8ce2c3e0c3441 353 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 179 202 6.0E-9 T 13-10-2018 RAM_19325 b34faf1bd845192212c8ce2c3e0c3441 353 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 274 287 6.0E-9 T 13-10-2018 RAM_19325 b34faf1bd845192212c8ce2c3e0c3441 353 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 128 142 6.0E-9 T 13-10-2018 RAM_19325 b34faf1bd845192212c8ce2c3e0c3441 353 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 246 272 6.0E-9 T 13-10-2018 RAM_19325 b34faf1bd845192212c8ce2c3e0c3441 353 PIRSF PIRSF000310 1 351 5.5E-91 T 13-10-2018 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 RAM_12665 1a95ee98f2aa49f978a02012a79c7cc2 1329 SUPERFAMILY SSF55874 505 630 1.26E-13 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_12665 1a95ee98f2aa49f978a02012a79c7cc2 1329 SMART SM00304 340 408 0.0046 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_12665 1a95ee98f2aa49f978a02012a79c7cc2 1329 Pfam PF00672 HAMP domain 340 403 1.4E-7 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_12665 1a95ee98f2aa49f978a02012a79c7cc2 1329 Pfam PF08376 Nitrate and nitrite sensing 62 300 1.1E-26 T 13-10-2018 IPR013587 Nitrate/nitrite sensing protein RAM_12665 1a95ee98f2aa49f978a02012a79c7cc2 1329 Gene3D G3DSA:3.30.565.10 484 630 2.1E-9 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_12665 1a95ee98f2aa49f978a02012a79c7cc2 1329 SMART SM00387 520 632 7.3E-5 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_08910 e791a76dae6230a5baee381f61aeadb6 211 Gene3D G3DSA:1.10.10.60 12 60 3.8E-20 T 13-10-2018 RAM_08910 e791a76dae6230a5baee381f61aeadb6 211 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 68 2.7E-13 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_08910 e791a76dae6230a5baee381f61aeadb6 211 Pfam PF16859 Bacterial transcriptional repressor C-terminal 80 183 3.0E-24 T 13-10-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RAM_08910 e791a76dae6230a5baee381f61aeadb6 211 Gene3D G3DSA:1.10.357.10 62 202 7.8E-31 T 13-10-2018 RAM_08910 e791a76dae6230a5baee381f61aeadb6 211 SUPERFAMILY SSF46689 13 76 1.3E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_08910 e791a76dae6230a5baee381f61aeadb6 211 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 22 35 3.7E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_08910 e791a76dae6230a5baee381f61aeadb6 211 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 43 66 3.7E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_08910 e791a76dae6230a5baee381f61aeadb6 211 SUPERFAMILY SSF48498 80 193 2.11E-19 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_14865 e374cdad9da4ba3bc7ceac6e7893c263 373 Gene3D G3DSA:3.40.50.1820 121 200 1.6E-7 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_14865 e374cdad9da4ba3bc7ceac6e7893c263 373 Pfam PF12697 Alpha/beta hydrolase family 1 225 7.6E-12 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_14865 e374cdad9da4ba3bc7ceac6e7893c263 373 Gene3D G3DSA:3.40.50.1820 1 120 5.1E-24 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_14865 e374cdad9da4ba3bc7ceac6e7893c263 373 SUPERFAMILY SSF53474 1 196 3.15E-31 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_40225 24573a1815125f69f84b65a5abe11054 402 Gene3D G3DSA:3.30.420.40 105 389 7.1E-73 T 13-10-2018 RAM_40225 24573a1815125f69f84b65a5abe11054 402 SUPERFAMILY SSF46785 31 88 3.92E-11 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_40225 24573a1815125f69f84b65a5abe11054 402 SUPERFAMILY SSF53067 98 395 2.49E-50 T 13-10-2018 RAM_40225 24573a1815125f69f84b65a5abe11054 402 ProSitePatterns PS01125 ROK family signature. 229 256 - T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 RAM_40225 24573a1815125f69f84b65a5abe11054 402 Gene3D G3DSA:1.10.10.10 34 92 7.6E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_40225 24573a1815125f69f84b65a5abe11054 402 Pfam PF00480 ROK family 100 394 3.3E-50 T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 RAM_40225 24573a1815125f69f84b65a5abe11054 402 Pfam PF13412 Winged helix-turn-helix DNA-binding 41 73 1.4E-5 T 13-10-2018 RAM_40225 24573a1815125f69f84b65a5abe11054 402 Gene3D G3DSA:3.30.420.40 219 379 7.1E-73 T 13-10-2018 RAM_41710 ad52dba02a567d6c96e864cf62b60a3c 1077 SMART SM01043 102 246 2.5E-48 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_41710 ad52dba02a567d6c96e864cf62b60a3c 1077 Gene3D G3DSA:1.25.40.10 99 292 1.2E-46 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_41710 ad52dba02a567d6c96e864cf62b60a3c 1077 Gene3D G3DSA:1.25.40.10 609 988 7.0E-11 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_41710 ad52dba02a567d6c96e864cf62b60a3c 1077 Pfam PF03704 Bacterial transcriptional activator domain 102 246 1.2E-39 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_41710 ad52dba02a567d6c96e864cf62b60a3c 1077 Pfam PF00486 Transcriptional regulatory protein, C terminal 23 95 7.9E-11 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_41710 ad52dba02a567d6c96e864cf62b60a3c 1077 Gene3D G3DSA:1.10.10.10 1 97 3.1E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_41710 ad52dba02a567d6c96e864cf62b60a3c 1077 SUPERFAMILY SSF52540 272 500 3.52E-14 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_41710 ad52dba02a567d6c96e864cf62b60a3c 1077 SUPERFAMILY SSF48452 98 267 2.11E-33 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_41710 ad52dba02a567d6c96e864cf62b60a3c 1077 Pfam PF13191 AAA ATPase domain 277 425 4.4E-19 T 13-10-2018 RAM_41710 ad52dba02a567d6c96e864cf62b60a3c 1077 SMART SM00862 15 95 4.0E-17 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_41710 ad52dba02a567d6c96e864cf62b60a3c 1077 SUPERFAMILY SSF46894 5 95 3.12E-14 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_41710 ad52dba02a567d6c96e864cf62b60a3c 1077 SUPERFAMILY SSF48452 108 1040 1.75E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_23620 e58ea256b65f05fb305d888197b85077 193 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 5 193 38.455 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RAM_23620 e58ea256b65f05fb305d888197b85077 193 Pfam PF00574 Clp protease 17 191 4.2E-74 T 13-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA RAM_23620 e58ea256b65f05fb305d888197b85077 193 Gene3D G3DSA:3.90.226.10 5 192 2.2E-68 T 13-10-2018 RAM_23620 e58ea256b65f05fb305d888197b85077 193 PRINTS PR00127 Clp protease catalytic subunit P signature 19 34 1.5E-41 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RAM_23620 e58ea256b65f05fb305d888197b85077 193 PRINTS PR00127 Clp protease catalytic subunit P signature 90 107 1.5E-41 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RAM_23620 e58ea256b65f05fb305d888197b85077 193 PRINTS PR00127 Clp protease catalytic subunit P signature 59 79 1.5E-41 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RAM_23620 e58ea256b65f05fb305d888197b85077 193 PRINTS PR00127 Clp protease catalytic subunit P signature 168 187 1.5E-41 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RAM_23620 e58ea256b65f05fb305d888197b85077 193 PRINTS PR00127 Clp protease catalytic subunit P signature 111 130 1.5E-41 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RAM_23620 e58ea256b65f05fb305d888197b85077 193 SUPERFAMILY SSF52096 18 191 3.65E-62 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_03760 aa868d57e2149e3c7a057b06ed9dd880 479 Hamap MF_01966 NAD(P)H-hydrate epimerase [nnrE]. 4 204 19.577 T 13-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 RAM_03760 aa868d57e2149e3c7a057b06ed9dd880 479 Pfam PF01256 Carbohydrate kinase 237 458 8.7E-54 T 13-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 RAM_03760 aa868d57e2149e3c7a057b06ed9dd880 479 PIRSF PIRSF017184 3 477 4.1E-96 T 13-10-2018 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr GO:0052855 MetaCyc: PWY-6938 RAM_03760 aa868d57e2149e3c7a057b06ed9dd880 479 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 214 476 19.227 T 13-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 RAM_03760 aa868d57e2149e3c7a057b06ed9dd880 479 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 228 471 1.0E-44 T 13-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 RAM_03760 aa868d57e2149e3c7a057b06ed9dd880 479 Gene3D G3DSA:3.40.1190.20 213 478 4.4E-74 T 13-10-2018 IPR029056 Ribokinase-like RAM_03760 aa868d57e2149e3c7a057b06ed9dd880 479 SUPERFAMILY SSF53613 216 472 6.22E-57 T 13-10-2018 IPR029056 Ribokinase-like RAM_03760 aa868d57e2149e3c7a057b06ed9dd880 479 TIGRFAM TIGR00197 yjeF_nterm: YjeF family N-terminal domain 20 203 4.4E-29 T 13-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 RAM_03760 aa868d57e2149e3c7a057b06ed9dd880 479 SUPERFAMILY SSF64153 4 235 1.31E-50 T 13-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 RAM_03760 aa868d57e2149e3c7a057b06ed9dd880 479 Gene3D G3DSA:3.40.50.10260 3 207 4.2E-48 T 13-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 RAM_03760 aa868d57e2149e3c7a057b06ed9dd880 479 Pfam PF03853 YjeF-related protein N-terminus 25 184 4.4E-37 T 13-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 RAM_03760 aa868d57e2149e3c7a057b06ed9dd880 479 ProSitePatterns PS01050 YjeF C-terminal domain signature 2. 414 424 - T 13-10-2018 IPR017953 Carbohydrate kinase, predicted, conserved site RAM_35620 230c39e23c1110d2fa85c4c51e8227ea 275 SUPERFAMILY SSF46785 169 270 5.57E-7 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_35620 230c39e23c1110d2fa85c4c51e8227ea 275 Gene3D G3DSA:1.10.10.10 141 271 8.9E-7 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_27760 44e4091bbfaaf3e85759812deb891863 403 PRINTS PR00385 P450 superfamily signature 240 257 2.8E-7 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_27760 44e4091bbfaaf3e85759812deb891863 403 PRINTS PR00385 P450 superfamily signature 352 363 2.8E-7 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_27760 44e4091bbfaaf3e85759812deb891863 403 PRINTS PR00385 P450 superfamily signature 275 286 2.8E-7 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_27760 44e4091bbfaaf3e85759812deb891863 403 PRINTS PR00385 P450 superfamily signature 343 352 2.8E-7 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_27760 44e4091bbfaaf3e85759812deb891863 403 PRINTS PR00359 B-class P450 signature 137 153 4.0E-56 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_27760 44e4091bbfaaf3e85759812deb891863 403 PRINTS PR00359 B-class P450 signature 352 363 4.0E-56 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_27760 44e4091bbfaaf3e85759812deb891863 403 PRINTS PR00359 B-class P450 signature 294 321 4.0E-56 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_27760 44e4091bbfaaf3e85759812deb891863 403 PRINTS PR00359 B-class P450 signature 322 337 4.0E-56 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_27760 44e4091bbfaaf3e85759812deb891863 403 PRINTS PR00359 B-class P450 signature 154 169 4.0E-56 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_27760 44e4091bbfaaf3e85759812deb891863 403 PRINTS PR00359 B-class P450 signature 89 100 4.0E-56 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_27760 44e4091bbfaaf3e85759812deb891863 403 PRINTS PR00359 B-class P450 signature 343 352 4.0E-56 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_27760 44e4091bbfaaf3e85759812deb891863 403 PRINTS PR00359 B-class P450 signature 194 216 4.0E-56 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_27760 44e4091bbfaaf3e85759812deb891863 403 PRINTS PR00359 B-class P450 signature 275 286 4.0E-56 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_27760 44e4091bbfaaf3e85759812deb891863 403 SUPERFAMILY SSF48264 14 403 2.62E-88 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_27760 44e4091bbfaaf3e85759812deb891863 403 Pfam PF00067 Cytochrome P450 276 370 1.7E-15 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_27760 44e4091bbfaaf3e85759812deb891863 403 Pfam PF00067 Cytochrome P450 207 261 2.4E-8 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_27760 44e4091bbfaaf3e85759812deb891863 403 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 345 354 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RAM_27760 44e4091bbfaaf3e85759812deb891863 403 Gene3D G3DSA:1.10.630.10 12 403 4.6E-121 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_19935 17cc470ac2d445723dc7e3f4c6c505a3 435 Pfam PF11975 Family 4 glycosyl hydrolase C-terminal domain 195 401 4.3E-60 T 13-10-2018 IPR022616 Glycosyl hydrolase, family 4, C-terminal GO:0004553 RAM_19935 17cc470ac2d445723dc7e3f4c6c505a3 435 SUPERFAMILY SSF51735 2 166 8.2E-48 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_19935 17cc470ac2d445723dc7e3f4c6c505a3 435 PRINTS PR00732 Glycosyl hydrolase family 4 signature 73 89 1.4E-31 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RAM_19935 17cc470ac2d445723dc7e3f4c6c505a3 435 PRINTS PR00732 Glycosyl hydrolase family 4 signature 94 107 1.4E-31 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RAM_19935 17cc470ac2d445723dc7e3f4c6c505a3 435 PRINTS PR00732 Glycosyl hydrolase family 4 signature 4 19 1.4E-31 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RAM_19935 17cc470ac2d445723dc7e3f4c6c505a3 435 PRINTS PR00732 Glycosyl hydrolase family 4 signature 110 130 1.4E-31 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RAM_19935 17cc470ac2d445723dc7e3f4c6c505a3 435 PRINTS PR00732 Glycosyl hydrolase family 4 signature 139 156 1.4E-31 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RAM_19935 17cc470ac2d445723dc7e3f4c6c505a3 435 PRINTS PR00732 Glycosyl hydrolase family 4 signature 191 203 1.4E-31 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RAM_19935 17cc470ac2d445723dc7e3f4c6c505a3 435 PRINTS PR00732 Glycosyl hydrolase family 4 signature 165 176 1.4E-31 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RAM_19935 17cc470ac2d445723dc7e3f4c6c505a3 435 Pfam PF02056 Family 4 glycosyl hydrolase 4 185 2.8E-55 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RAM_19935 17cc470ac2d445723dc7e3f4c6c505a3 435 SUPERFAMILY SSF56327 169 427 7.2E-66 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 RAM_19935 17cc470ac2d445723dc7e3f4c6c505a3 435 Gene3D G3DSA:3.90.1820.20 1 426 9.0E-134 T 13-10-2018 RAM_20960 24e44c9613c3f9530d6f1ddc8f8095b6 305 SUPERFAMILY SSF63380 3 96 1.43E-25 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RAM_20960 24e44c9613c3f9530d6f1ddc8f8095b6 305 SUPERFAMILY SSF54292 201 304 8.52E-26 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RAM_20960 24e44c9613c3f9530d6f1ddc8f8095b6 305 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 254 262 - T 13-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RAM_20960 24e44c9613c3f9530d6f1ddc8f8095b6 305 Gene3D G3DSA:3.40.50.80 100 208 6.7E-23 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RAM_20960 24e44c9613c3f9530d6f1ddc8f8095b6 305 Gene3D G3DSA:2.40.30.10 1 97 1.8E-26 T 13-10-2018 RAM_20960 24e44c9613c3f9530d6f1ddc8f8095b6 305 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 223 296 5.1E-10 T 13-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RAM_20960 24e44c9613c3f9530d6f1ddc8f8095b6 305 Gene3D G3DSA:3.10.20.30 209 305 4.8E-25 T 13-10-2018 IPR012675 Beta-grasp domain superfamily RAM_20960 24e44c9613c3f9530d6f1ddc8f8095b6 305 Pfam PF00175 Oxidoreductase NAD-binding domain 108 152 7.3E-6 T 13-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 RAM_20960 24e44c9613c3f9530d6f1ddc8f8095b6 305 PRINTS PR00409 Phthalate dioxygenase reductase family signature 107 126 3.1E-26 T 13-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RAM_20960 24e44c9613c3f9530d6f1ddc8f8095b6 305 PRINTS PR00409 Phthalate dioxygenase reductase family signature 27 37 3.1E-26 T 13-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RAM_20960 24e44c9613c3f9530d6f1ddc8f8095b6 305 PRINTS PR00409 Phthalate dioxygenase reductase family signature 182 190 3.1E-26 T 13-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RAM_20960 24e44c9613c3f9530d6f1ddc8f8095b6 305 PRINTS PR00409 Phthalate dioxygenase reductase family signature 72 86 3.1E-26 T 13-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RAM_20960 24e44c9613c3f9530d6f1ddc8f8095b6 305 PRINTS PR00409 Phthalate dioxygenase reductase family signature 132 141 3.1E-26 T 13-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RAM_20960 24e44c9613c3f9530d6f1ddc8f8095b6 305 PRINTS PR00409 Phthalate dioxygenase reductase family signature 48 62 3.1E-26 T 13-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RAM_20960 24e44c9613c3f9530d6f1ddc8f8095b6 305 SUPERFAMILY SSF52343 94 211 3.01E-25 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RAM_00865 a77d46cf9841f70cb181601030c4d827 267 SUPERFAMILY SSF50199 65 178 2.62E-8 T 13-10-2018 RAM_00865 a77d46cf9841f70cb181601030c4d827 267 Gene3D G3DSA:2.40.50.90 59 183 5.8E-9 T 13-10-2018 IPR035437 SNase-like, OB-fold superfamily RAM_00865 a77d46cf9841f70cb181601030c4d827 267 Pfam PF05901 Excalibur calcium-binding domain 231 266 3.7E-14 T 13-10-2018 IPR008613 Excalibur calcium-binding domain RAM_00865 a77d46cf9841f70cb181601030c4d827 267 SMART SM00894 230 266 1.9E-18 T 13-10-2018 IPR008613 Excalibur calcium-binding domain RAM_08600 2a9a505466bdd80770710c540202f4e8 187 Gene3D G3DSA:1.10.357.10 2 187 1.9E-55 T 13-10-2018 RAM_08600 2a9a505466bdd80770710c540202f4e8 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 1.0E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_08600 2a9a505466bdd80770710c540202f4e8 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 1.0E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_08600 2a9a505466bdd80770710c540202f4e8 187 SUPERFAMILY SSF46689 5 84 2.74E-19 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_08600 2a9a505466bdd80770710c540202f4e8 187 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 61 2.1E-15 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_08600 2a9a505466bdd80770710c540202f4e8 187 SUPERFAMILY SSF48498 82 186 2.33E-13 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_09265 d1b95f15f0abbb9865a0dac3306855cc 440 Pfam PF00392 Bacterial regulatory proteins, gntR family 4 66 4.6E-11 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_09265 d1b95f15f0abbb9865a0dac3306855cc 440 SMART SM00345 7 66 1.0E-11 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_09265 d1b95f15f0abbb9865a0dac3306855cc 440 Gene3D G3DSA:3.40.640.10 119 330 2.4E-52 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_09265 d1b95f15f0abbb9865a0dac3306855cc 440 SUPERFAMILY SSF46785 4 70 1.03E-13 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_09265 d1b95f15f0abbb9865a0dac3306855cc 440 Pfam PF00155 Aminotransferase class I and II 129 412 1.0E-9 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RAM_09265 d1b95f15f0abbb9865a0dac3306855cc 440 Gene3D G3DSA:3.90.1150.10 100 428 2.4E-52 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_09265 d1b95f15f0abbb9865a0dac3306855cc 440 SUPERFAMILY SSF53383 104 430 1.29E-56 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_09265 d1b95f15f0abbb9865a0dac3306855cc 440 Gene3D G3DSA:1.10.10.10 3 74 3.1E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_07695 74e909992c8c67b29e5e0f90881f6cd2 324 Gene3D G3DSA:3.40.50.2300 133 315 7.3E-88 T 13-10-2018 RAM_07695 74e909992c8c67b29e5e0f90881f6cd2 324 SUPERFAMILY SSF53822 28 318 1.18E-40 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_07695 74e909992c8c67b29e5e0f90881f6cd2 324 Pfam PF13407 Periplasmic binding protein domain 36 297 1.2E-24 T 13-10-2018 IPR025997 Periplasmic binding protein RAM_07695 74e909992c8c67b29e5e0f90881f6cd2 324 PIRSF PIRSF002816 4 323 9.8E-59 T 13-10-2018 IPR026266 L-arabinose-binding periplasmic protein GO:0042882 RAM_07695 74e909992c8c67b29e5e0f90881f6cd2 324 Gene3D G3DSA:3.40.50.2300 32 307 7.3E-88 T 13-10-2018 RAM_26810 c9040dbc6204373022bc6313ee4509bb 486 ProSitePatterns PS00738 S-adenosyl-L-homocysteine hydrolase signature 1. 84 98 - T 13-10-2018 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 RAM_26810 c9040dbc6204373022bc6313ee4509bb 486 SMART SM00997 244 406 1.7E-101 T 13-10-2018 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 RAM_26810 c9040dbc6204373022bc6313ee4509bb 486 PIRSF PIRSF001109 1 486 5.2E-185 T 13-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 RAM_26810 c9040dbc6204373022bc6313ee4509bb 486 SUPERFAMILY SSF52283 11 486 1.19E-109 T 13-10-2018 RAM_26810 c9040dbc6204373022bc6313ee4509bb 486 Pfam PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 244 406 2.3E-76 T 13-10-2018 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 RAM_26810 c9040dbc6204373022bc6313ee4509bb 486 Gene3D G3DSA:3.40.50.720 247 407 1.1E-231 T 13-10-2018 RAM_26810 c9040dbc6204373022bc6313ee4509bb 486 Gene3D G3DSA:3.40.50.1480 15 486 1.1E-231 T 13-10-2018 RAM_26810 c9040dbc6204373022bc6313ee4509bb 486 SUPERFAMILY SSF51735 244 406 5.1E-73 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_26810 c9040dbc6204373022bc6313ee4509bb 486 Pfam PF05221 S-adenosyl-L-homocysteine hydrolase 12 485 1.8E-141 T 13-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 RAM_26810 c9040dbc6204373022bc6313ee4509bb 486 TIGRFAM TIGR00936 ahcY: adenosylhomocysteinase 13 478 5.4E-182 T 13-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 RAM_26810 c9040dbc6204373022bc6313ee4509bb 486 SMART SM00996 12 485 0.0 T 13-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 RAM_26810 c9040dbc6204373022bc6313ee4509bb 486 Hamap MF_00563 Adenosylhomocysteinase [ahcY]. 8 478 47.434 T 13-10-2018 IPR034373 Adenosylhomocysteinase GO:0004013|GO:0019510|GO:0051287 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-2408508|Reactome: R-HSA-5578997 RAM_40030 2f7189b52af055d631a9a19a7d17d1e2 294 Pfam PF00288 GHMP kinases N terminal domain 83 144 7.8E-11 T 13-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 RAM_40030 2f7189b52af055d631a9a19a7d17d1e2 294 PRINTS PR00958 Homoserine kinase signature 247 262 9.6E-34 T 13-10-2018 RAM_40030 2f7189b52af055d631a9a19a7d17d1e2 294 PRINTS PR00958 Homoserine kinase signature 11 26 9.6E-34 T 13-10-2018 RAM_40030 2f7189b52af055d631a9a19a7d17d1e2 294 PRINTS PR00958 Homoserine kinase signature 97 112 9.6E-34 T 13-10-2018 RAM_40030 2f7189b52af055d631a9a19a7d17d1e2 294 PRINTS PR00958 Homoserine kinase signature 131 144 9.6E-34 T 13-10-2018 RAM_40030 2f7189b52af055d631a9a19a7d17d1e2 294 PRINTS PR00958 Homoserine kinase signature 170 187 9.6E-34 T 13-10-2018 RAM_40030 2f7189b52af055d631a9a19a7d17d1e2 294 TIGRFAM TIGR00191 thrB: homoserine kinase 4 264 1.5E-62 T 13-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 RAM_40030 2f7189b52af055d631a9a19a7d17d1e2 294 Gene3D G3DSA:3.30.70.890 167 267 2.4E-29 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily RAM_40030 2f7189b52af055d631a9a19a7d17d1e2 294 PIRSF PIRSF000676 1 267 3.6E-72 T 13-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 RAM_40030 2f7189b52af055d631a9a19a7d17d1e2 294 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 90 101 - T 13-10-2018 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 RAM_40030 2f7189b52af055d631a9a19a7d17d1e2 294 Gene3D G3DSA:3.30.230.10 3 166 6.2E-47 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RAM_40030 2f7189b52af055d631a9a19a7d17d1e2 294 SUPERFAMILY SSF54211 4 154 1.75E-31 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RAM_40030 2f7189b52af055d631a9a19a7d17d1e2 294 SUPERFAMILY SSF55060 165 265 4.68E-24 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily RAM_40030 2f7189b52af055d631a9a19a7d17d1e2 294 Hamap MF_00384 Homoserine kinase [thrB]. 6 292 27.453 T 13-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 RAM_40030 2f7189b52af055d631a9a19a7d17d1e2 294 Pfam PF08544 GHMP kinases C terminal 225 264 4.7E-6 T 13-10-2018 IPR013750 GHMP kinase, C-terminal domain RAM_07120 14da2d1195fb5322fdaa56c4b81058fe 466 SUPERFAMILY SSF51445 25 299 3.33E-21 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_07120 14da2d1195fb5322fdaa56c4b81058fe 466 Gene3D G3DSA:3.20.20.80 16 307 1.3E-20 T 13-10-2018 RAM_07120 14da2d1195fb5322fdaa56c4b81058fe 466 Gene3D G3DSA:2.80.10.50 334 465 1.3E-22 T 13-10-2018 RAM_07120 14da2d1195fb5322fdaa56c4b81058fe 466 SUPERFAMILY SSF50370 330 463 2.93E-24 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_07120 14da2d1195fb5322fdaa56c4b81058fe 466 SMART SM00458 330 463 1.2E-5 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_07120 14da2d1195fb5322fdaa56c4b81058fe 466 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 367 450 1.6E-16 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_09770 5320c10a4c8484c48ebcb94a7513e72e 293 ProDom PD003367 URICASE OXIDOREDUCTASE URATE OXIDASE METABOLISM PURINE PEROXISOME ACETYLATION II DIRECT 178 280 3.0E-33 T 13-10-2018 RAM_09770 5320c10a4c8484c48ebcb94a7513e72e 293 Gene3D G3DSA:3.10.270.10 1 293 3.2E-111 T 13-10-2018 RAM_09770 5320c10a4c8484c48ebcb94a7513e72e 293 Pfam PF01014 Uricase 9 132 7.4E-19 T 13-10-2018 IPR002042 Uricase KEGG: 00230+1.7.3.3|KEGG: 00232+1.7.3.3|MetaCyc: PWY-5691 RAM_09770 5320c10a4c8484c48ebcb94a7513e72e 293 Pfam PF01014 Uricase 143 275 1.5E-36 T 13-10-2018 IPR002042 Uricase KEGG: 00230+1.7.3.3|KEGG: 00232+1.7.3.3|MetaCyc: PWY-5691 RAM_09770 5320c10a4c8484c48ebcb94a7513e72e 293 TIGRFAM TIGR03383 urate_oxi: urate oxidase 5 280 3.6E-108 T 13-10-2018 IPR002042 Uricase KEGG: 00230+1.7.3.3|KEGG: 00232+1.7.3.3|MetaCyc: PWY-5691 RAM_09770 5320c10a4c8484c48ebcb94a7513e72e 293 SUPERFAMILY SSF55620 5 134 2.09E-44 T 13-10-2018 RAM_09770 5320c10a4c8484c48ebcb94a7513e72e 293 SUPERFAMILY SSF55620 139 291 1.11E-59 T 13-10-2018 RAM_09770 5320c10a4c8484c48ebcb94a7513e72e 293 ProSitePatterns PS00366 Uricase signature. 148 175 - T 13-10-2018 IPR019842 Uricase, conserved site GO:0004846|GO:0006144|GO:0055114 KEGG: 00230+1.7.3.3|KEGG: 00232+1.7.3.3|MetaCyc: PWY-5691 RAM_09770 5320c10a4c8484c48ebcb94a7513e72e 293 PRINTS PR00093 Uricase signature 86 99 3.9E-20 T 13-10-2018 IPR002042 Uricase KEGG: 00230+1.7.3.3|KEGG: 00232+1.7.3.3|MetaCyc: PWY-5691 RAM_09770 5320c10a4c8484c48ebcb94a7513e72e 293 PRINTS PR00093 Uricase signature 11 22 3.9E-20 T 13-10-2018 IPR002042 Uricase KEGG: 00230+1.7.3.3|KEGG: 00232+1.7.3.3|MetaCyc: PWY-5691 RAM_09770 5320c10a4c8484c48ebcb94a7513e72e 293 PRINTS PR00093 Uricase signature 50 64 3.9E-20 T 13-10-2018 IPR002042 Uricase KEGG: 00230+1.7.3.3|KEGG: 00232+1.7.3.3|MetaCyc: PWY-5691 RAM_09770 5320c10a4c8484c48ebcb94a7513e72e 293 PRINTS PR00093 Uricase signature 148 164 3.9E-20 T 13-10-2018 IPR002042 Uricase KEGG: 00230+1.7.3.3|KEGG: 00232+1.7.3.3|MetaCyc: PWY-5691 RAM_09770 5320c10a4c8484c48ebcb94a7513e72e 293 PRINTS PR00093 Uricase signature 164 176 3.9E-20 T 13-10-2018 IPR002042 Uricase KEGG: 00230+1.7.3.3|KEGG: 00232+1.7.3.3|MetaCyc: PWY-5691 RAM_09770 5320c10a4c8484c48ebcb94a7513e72e 293 PIRSF PIRSF000241 2 286 3.2E-102 T 13-10-2018 IPR002042 Uricase KEGG: 00230+1.7.3.3|KEGG: 00232+1.7.3.3|MetaCyc: PWY-5691 RAM_44555 09182522102a00d44a6e9d8f7cf5842b 128 SUPERFAMILY SSF50475 2 125 1.96E-28 T 13-10-2018 RAM_44555 09182522102a00d44a6e9d8f7cf5842b 128 TIGRFAM TIGR03618 Rv1155_F420: PPOX class probable F420-dependent enzyme 7 125 5.4E-35 T 13-10-2018 IPR019920 F420-binding domain, putative RAM_44555 09182522102a00d44a6e9d8f7cf5842b 128 Gene3D G3DSA:2.30.110.10 2 127 3.1E-32 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_44555 09182522102a00d44a6e9d8f7cf5842b 128 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 3 86 1.5E-18 T 13-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RAM_44360 54d1698be2bde44065d2d0162c32b70c 421 Gene3D G3DSA:1.10.10.10 126 174 7.5E-7 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_44360 54d1698be2bde44065d2d0162c32b70c 421 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 36 67 - T 13-10-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_44360 54d1698be2bde44065d2d0162c32b70c 421 SUPERFAMILY SSF88946 20 86 6.28E-11 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_44360 54d1698be2bde44065d2d0162c32b70c 421 Pfam PF08281 Sigma-70, region 4 120 170 1.7E-9 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_44360 54d1698be2bde44065d2d0162c32b70c 421 Gene3D G3DSA:1.10.1740.10 3 77 9.5E-7 T 13-10-2018 RAM_44360 54d1698be2bde44065d2d0162c32b70c 421 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 22 171 3.5E-14 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_44360 54d1698be2bde44065d2d0162c32b70c 421 Pfam PF04542 Sigma-70 region 2 20 81 1.8E-11 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_44360 54d1698be2bde44065d2d0162c32b70c 421 SUPERFAMILY SSF88659 109 171 4.11E-11 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_28145 a0511f795daaeaeea84a7638e45924de 1404 SUPERFAMILY SSF49899 952 1165 1.27E-34 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily RAM_28145 a0511f795daaeaeea84a7638e45924de 1404 Gene3D G3DSA:2.60.120.200 769 944 1.3E-30 T 13-10-2018 RAM_28145 a0511f795daaeaeea84a7638e45924de 1404 Gene3D G3DSA:2.60.120.200 1208 1400 1.1E-15 T 13-10-2018 RAM_28145 a0511f795daaeaeea84a7638e45924de 1404 SUPERFAMILY SSF49899 1179 1387 4.01E-16 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily RAM_28145 a0511f795daaeaeea84a7638e45924de 1404 Gene3D G3DSA:2.60.120.200 961 1166 3.1E-35 T 13-10-2018 RAM_28145 a0511f795daaeaeea84a7638e45924de 1404 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 1213 1380 4.9E-14 T 13-10-2018 RAM_28145 a0511f795daaeaeea84a7638e45924de 1404 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 1007 1163 1.3E-27 T 13-10-2018 RAM_28145 a0511f795daaeaeea84a7638e45924de 1404 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 773 930 2.3E-29 T 13-10-2018 RAM_28145 a0511f795daaeaeea84a7638e45924de 1404 SUPERFAMILY SSF49899 699 934 2.47E-30 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily RAM_28145 a0511f795daaeaeea84a7638e45924de 1404 SMART SM00560 1024 1160 2.0E-8 T 13-10-2018 IPR006558 LamG-like jellyroll fold RAM_28145 a0511f795daaeaeea84a7638e45924de 1404 SMART SM00560 790 928 2.7E-15 T 13-10-2018 IPR006558 LamG-like jellyroll fold RAM_27635 0f5acb4b2978ddf34a897f07b285a05a 617 Gene3D G3DSA:1.10.10.10 1 95 1.6E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_27635 0f5acb4b2978ddf34a897f07b285a05a 617 SUPERFAMILY SSF52540 266 477 5.01E-21 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_27635 0f5acb4b2978ddf34a897f07b285a05a 617 SMART SM00862 15 93 4.7E-7 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_27635 0f5acb4b2978ddf34a897f07b285a05a 617 SUPERFAMILY SSF48452 96 265 5.82E-39 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_27635 0f5acb4b2978ddf34a897f07b285a05a 617 SUPERFAMILY SSF46894 2 92 1.9E-13 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_27635 0f5acb4b2978ddf34a897f07b285a05a 617 Pfam PF03704 Bacterial transcriptional activator domain 100 245 2.2E-44 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_27635 0f5acb4b2978ddf34a897f07b285a05a 617 PRINTS PR00364 Disease resistance protein signature 377 391 8.0E-9 T 13-10-2018 RAM_27635 0f5acb4b2978ddf34a897f07b285a05a 617 PRINTS PR00364 Disease resistance protein signature 461 475 8.0E-9 T 13-10-2018 RAM_27635 0f5acb4b2978ddf34a897f07b285a05a 617 PRINTS PR00364 Disease resistance protein signature 304 319 8.0E-9 T 13-10-2018 RAM_27635 0f5acb4b2978ddf34a897f07b285a05a 617 Pfam PF00486 Transcriptional regulatory protein, C terminal 22 92 8.3E-9 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_27635 0f5acb4b2978ddf34a897f07b285a05a 617 Gene3D G3DSA:1.25.40.10 98 268 8.2E-50 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_27635 0f5acb4b2978ddf34a897f07b285a05a 617 SMART SM01043 100 245 3.7E-51 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_27635 0f5acb4b2978ddf34a897f07b285a05a 617 Gene3D G3DSA:3.40.50.300 269 418 3.6E-23 T 13-10-2018 RAM_27635 0f5acb4b2978ddf34a897f07b285a05a 617 Pfam PF00931 NB-ARC domain 301 478 4.5E-8 T 13-10-2018 IPR002182 NB-ARC GO:0043531 Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-6798695|Reactome: R-HSA-6803207|Reactome: R-HSA-8953750 RAM_34785 a1e8c580cab00b822a4fa4ac3ccf1747 365 SUPERFAMILY SSF110296 40 363 2.3E-15 T 13-10-2018 RAM_34785 a1e8c580cab00b822a4fa4ac3ccf1747 365 Gene3D G3DSA:2.130.10.10 252 363 1.1E-6 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RAM_34785 a1e8c580cab00b822a4fa4ac3ccf1747 365 Gene3D G3DSA:2.130.10.10 38 165 6.2E-6 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RAM_06360 16d72adaf2d45b6e3b95350ec8bfe40e 160 Hamap MF_00023 SsrA-binding protein [smpB]. 1 156 75.575 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 RAM_06360 16d72adaf2d45b6e3b95350ec8bfe40e 160 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 10 133 9.0E-54 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 RAM_06360 16d72adaf2d45b6e3b95350ec8bfe40e 160 Gene3D G3DSA:2.40.280.10 3 130 1.5E-52 T 13-10-2018 IPR023620 Small protein B RAM_06360 16d72adaf2d45b6e3b95350ec8bfe40e 160 TIGRFAM TIGR00086 smpB: SsrA-binding protein 9 150 1.3E-60 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 RAM_06360 16d72adaf2d45b6e3b95350ec8bfe40e 160 SUPERFAMILY SSF74982 3 133 1.83E-54 T 13-10-2018 IPR023620 Small protein B RAM_06360 16d72adaf2d45b6e3b95350ec8bfe40e 160 Pfam PF01668 SmpB protein 10 150 1.8E-63 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 RAM_06360 16d72adaf2d45b6e3b95350ec8bfe40e 160 ProSitePatterns PS01317 SsrA-binding protein. 28 40 - T 13-10-2018 IPR020081 SsrA-binding protein, conserved site RAM_11020 9176c1a5b4ea5fb2208486dfa209fc9c 311 Gene3D G3DSA:3.20.20.30 4 311 2.2E-73 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_11020 9176c1a5b4ea5fb2208486dfa209fc9c 311 Pfam PF00296 Luciferase-like monooxygenase 8 248 9.9E-52 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_11020 9176c1a5b4ea5fb2208486dfa209fc9c 311 TIGRFAM TIGR03560 F420_Rv1855c: probable F420-dependent oxidoreductase, Rv1855c family 2 231 9.5E-95 T 13-10-2018 IPR019952 F420-dependent oxidoreductase-predicted, Rv1855c RAM_11020 9176c1a5b4ea5fb2208486dfa209fc9c 311 SUPERFAMILY SSF51679 9 310 2.88E-73 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_36220 1acd6f427eb32417b1eccd47475dc211 219 SUPERFAMILY SSF55469 2 206 2.75E-49 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RAM_36220 1acd6f427eb32417b1eccd47475dc211 219 Gene3D G3DSA:3.40.109.10 2 178 1.0E-48 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RAM_36220 1acd6f427eb32417b1eccd47475dc211 219 TIGRFAM TIGR02476 BluB: 5,6-dimethylbenzimidazole synthase 3 200 7.3E-68 T 13-10-2018 IPR012825 5,6-dimethylbenzimidazole synthase BluB KEGG: 00740+1.13.11.79|MetaCyc: PWY-5523 RAM_36220 1acd6f427eb32417b1eccd47475dc211 219 Pfam PF00881 Nitroreductase family 9 175 3.9E-31 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 RAM_18705 96676f1cb685eee8f04a0fb107950375 258 Gene3D G3DSA:3.40.50.1110 1 205 1.9E-36 T 13-10-2018 IPR036514 SGNH hydrolase superfamily RAM_18705 96676f1cb685eee8f04a0fb107950375 258 SUPERFAMILY SSF52266 3 197 1.02E-29 T 13-10-2018 RAM_38910 937080289a6f86e24ae4465d4f918252 136 SUPERFAMILY SSF55729 17 123 5.91E-22 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_38910 937080289a6f86e24ae4465d4f918252 136 Gene3D G3DSA:3.40.630.30 8 130 1.4E-25 T 13-10-2018 RAM_38910 937080289a6f86e24ae4465d4f918252 136 Pfam PF00583 Acetyltransferase (GNAT) family 24 121 2.4E-16 T 13-10-2018 IPR000182 GNAT domain RAM_25805 a52980446d308825ccbb41533002546c 1159 Gene3D G3DSA:2.60.40.10 830 941 1.1E-30 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_25805 a52980446d308825ccbb41533002546c 1159 Pfam PF00703 Glycosyl hydrolases family 2 238 353 5.0E-10 T 13-10-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RAM_25805 a52980446d308825ccbb41533002546c 1159 Pfam PF00041 Fibronectin type III domain 952 1026 1.6E-5 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 RAM_25805 a52980446d308825ccbb41533002546c 1159 Gene3D G3DSA:2.60.40.10 947 1033 5.6E-17 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_25805 a52980446d308825ccbb41533002546c 1159 SUPERFAMILY SSF49384 1034 1139 1.12E-12 T 13-10-2018 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily GO:0030246 RAM_25805 a52980446d308825ccbb41533002546c 1159 Gene3D G3DSA:2.60.40.10 703 829 5.5E-26 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_25805 a52980446d308825ccbb41533002546c 1159 SMART SM00060 949 1023 1.3E-7 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 RAM_25805 a52980446d308825ccbb41533002546c 1159 SUPERFAMILY SSF49303 236 353 1.37E-16 T 13-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily RAM_25805 a52980446d308825ccbb41533002546c 1159 SUPERFAMILY SSF49265 947 1035 1.64E-14 T 13-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 RAM_25805 a52980446d308825ccbb41533002546c 1159 SMART SM00637 1039 1141 2.3E-4 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_25805 a52980446d308825ccbb41533002546c 1159 Gene3D G3DSA:2.60.120.260 36 230 1.3E-38 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_25805 a52980446d308825ccbb41533002546c 1159 Gene3D G3DSA:2.60.40.10 233 353 7.7E-23 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_25805 a52980446d308825ccbb41533002546c 1159 SUPERFAMILY SSF49303 703 807 9.35E-15 T 13-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily RAM_25805 a52980446d308825ccbb41533002546c 1159 SUPERFAMILY SSF49785 45 228 1.59E-29 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_25805 a52980446d308825ccbb41533002546c 1159 SUPERFAMILY SSF49303 791 938 3.67E-21 T 13-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily RAM_25805 a52980446d308825ccbb41533002546c 1159 Gene3D G3DSA:2.60.40.290 1036 1144 2.2E-14 T 13-10-2018 IPR012291 CBM2, carbohydrate-binding domain superfamily GO:0004553|GO:0030247 RAM_25805 a52980446d308825ccbb41533002546c 1159 SUPERFAMILY SSF51445 350 700 4.07E-52 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_25805 a52980446d308825ccbb41533002546c 1159 Gene3D G3DSA:3.20.20.80 363 700 3.4E-61 T 13-10-2018 RAM_25805 a52980446d308825ccbb41533002546c 1159 Pfam PF00553 Cellulose binding domain 1041 1139 3.2E-9 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_39770 4a62470e3730adc947469daf93e37ce1 154 Gene3D G3DSA:1.10.10.10 1 56 2.2E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_39770 4a62470e3730adc947469daf93e37ce1 154 Pfam PF13404 AsnC-type helix-turn-helix domain 5 46 8.2E-16 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_39770 4a62470e3730adc947469daf93e37ce1 154 Pfam PF01037 Lrp/AsnC ligand binding domain 80 137 2.8E-11 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RAM_39770 4a62470e3730adc947469daf93e37ce1 154 SUPERFAMILY SSF54909 66 139 8.18E-14 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_39770 4a62470e3730adc947469daf93e37ce1 154 ProSitePatterns PS00519 AsnC-type HTH domain signature. 23 49 - T 13-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site RAM_39770 4a62470e3730adc947469daf93e37ce1 154 SUPERFAMILY SSF46785 5 65 1.11E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_39770 4a62470e3730adc947469daf93e37ce1 154 Gene3D G3DSA:3.30.70.920 57 140 1.1E-19 T 13-10-2018 RAM_39770 4a62470e3730adc947469daf93e37ce1 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 5 21 6.4E-14 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_39770 4a62470e3730adc947469daf93e37ce1 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 21 32 6.4E-14 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_39770 4a62470e3730adc947469daf93e37ce1 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 32 51 6.4E-14 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_39770 4a62470e3730adc947469daf93e37ce1 154 SMART SM00344 5 111 5.9E-33 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RAM_29165 9f131224f404f14afbf17e070988dbc6 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 7.8E-16 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_29165 9f131224f404f14afbf17e070988dbc6 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 7.8E-16 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_29165 9f131224f404f14afbf17e070988dbc6 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 7.8E-16 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_29165 9f131224f404f14afbf17e070988dbc6 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 7.8E-16 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_29165 9f131224f404f14afbf17e070988dbc6 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 7.8E-16 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_29165 9f131224f404f14afbf17e070988dbc6 275 Pfam PF00106 short chain dehydrogenase 10 194 2.1E-29 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_29165 9f131224f404f14afbf17e070988dbc6 275 SUPERFAMILY SSF51735 7 227 1.43E-45 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_29165 9f131224f404f14afbf17e070988dbc6 275 PIRSF PIRSF000126 1 262 1.3E-51 T 13-10-2018 RAM_29165 9f131224f404f14afbf17e070988dbc6 275 Gene3D G3DSA:3.40.50.720 5 234 1.2E-46 T 13-10-2018 RAM_21015 532dd4a44653f9c3b56a3bcc71a37d46 265 Pfam PF05050 Methyltransferase FkbM domain 41 243 5.3E-16 T 13-10-2018 IPR006342 Methyltransferase FkbM RAM_21015 532dd4a44653f9c3b56a3bcc71a37d46 265 TIGRFAM TIGR01444 fkbM_fam: methyltransferase, FkbM family 171 224 4.1E-14 T 13-10-2018 IPR006342 Methyltransferase FkbM RAM_21015 532dd4a44653f9c3b56a3bcc71a37d46 265 TIGRFAM TIGR01444 fkbM_fam: methyltransferase, FkbM family 38 126 1.2E-12 T 13-10-2018 IPR006342 Methyltransferase FkbM RAM_21015 532dd4a44653f9c3b56a3bcc71a37d46 265 SUPERFAMILY SSF53335 17 245 3.16E-31 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_12555 60d5a82ec12236b9bfb67b480e74f230 474 Gene3D G3DSA:2.40.33.10 72 166 1.1E-135 T 13-10-2018 IPR015806 Pyruvate kinase, insert domain superfamily GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RAM_12555 60d5a82ec12236b9bfb67b480e74f230 474 Gene3D G3DSA:3.40.1380.20 344 469 2.1E-31 T 13-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RAM_12555 60d5a82ec12236b9bfb67b480e74f230 474 ProSitePatterns PS00110 Pyruvate kinase active site signature. 214 226 - T 13-10-2018 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RAM_12555 60d5a82ec12236b9bfb67b480e74f230 474 SUPERFAMILY SSF50800 71 165 1.67E-26 T 13-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily RAM_12555 60d5a82ec12236b9bfb67b480e74f230 474 SUPERFAMILY SSF52935 322 468 9.94E-35 T 13-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RAM_12555 60d5a82ec12236b9bfb67b480e74f230 474 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 3 467 2.7E-167 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RAM_12555 60d5a82ec12236b9bfb67b480e74f230 474 SUPERFAMILY SSF51621 2 336 1.57E-95 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 RAM_12555 60d5a82ec12236b9bfb67b480e74f230 474 Gene3D G3DSA:3.20.20.60 6 331 1.1E-135 T 13-10-2018 RAM_12555 60d5a82ec12236b9bfb67b480e74f230 474 Pfam PF00224 Pyruvate kinase, barrel domain 3 335 2.7E-118 T 13-10-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RAM_12555 60d5a82ec12236b9bfb67b480e74f230 474 PRINTS PR01050 Pyruvate kinase family signature 243 267 1.7E-64 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RAM_12555 60d5a82ec12236b9bfb67b480e74f230 474 PRINTS PR01050 Pyruvate kinase family signature 312 328 1.7E-64 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RAM_12555 60d5a82ec12236b9bfb67b480e74f230 474 PRINTS PR01050 Pyruvate kinase family signature 216 242 1.7E-64 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RAM_12555 60d5a82ec12236b9bfb67b480e74f230 474 PRINTS PR01050 Pyruvate kinase family signature 185 199 1.7E-64 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RAM_12555 60d5a82ec12236b9bfb67b480e74f230 474 PRINTS PR01050 Pyruvate kinase family signature 293 311 1.7E-64 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RAM_12555 60d5a82ec12236b9bfb67b480e74f230 474 PRINTS PR01050 Pyruvate kinase family signature 60 76 1.7E-64 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RAM_12555 60d5a82ec12236b9bfb67b480e74f230 474 PRINTS PR01050 Pyruvate kinase family signature 268 292 1.7E-64 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RAM_12555 60d5a82ec12236b9bfb67b480e74f230 474 Pfam PF02887 Pyruvate kinase, alpha/beta domain 355 466 1.0E-24 T 13-10-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RAM_07940 375e9af0db2319129cfa8a657df99433 675 Gene3D G3DSA:3.40.605.10 10 486 1.1E-148 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RAM_07940 375e9af0db2319129cfa8a657df99433 675 Pfam PF01575 MaoC like domain 538 640 1.6E-19 T 13-10-2018 IPR002539 MaoC-like dehydratase domain RAM_07940 375e9af0db2319129cfa8a657df99433 675 TIGRFAM TIGR02278 PaaN-DH: phenylacetic acid degradation protein paaN 4 672 5.9E-296 T 13-10-2018 IPR011966 Phenylacetic acid degradation protein PaaN KEGG: 00360+3.3.2.12+1.2.1.91 RAM_07940 375e9af0db2319129cfa8a657df99433 675 SUPERFAMILY SSF54637 527 673 2.06E-32 T 13-10-2018 IPR029069 HotDog domain superfamily RAM_07940 375e9af0db2319129cfa8a657df99433 675 SUPERFAMILY SSF53720 4 502 9.16E-81 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RAM_07940 375e9af0db2319129cfa8a657df99433 675 Pfam PF00171 Aldehyde dehydrogenase family 12 441 3.3E-61 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RAM_07940 375e9af0db2319129cfa8a657df99433 675 Gene3D G3DSA:3.40.309.10 259 474 1.1E-148 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RAM_07940 375e9af0db2319129cfa8a657df99433 675 Gene3D G3DSA:3.10.129.10 530 675 1.2E-37 T 13-10-2018 RAM_05315 cdb6d0105a54c532fe5d0372c25c9ef5 299 Pfam PF00535 Glycosyl transferase family 2 6 114 3.6E-24 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RAM_05315 cdb6d0105a54c532fe5d0372c25c9ef5 299 Gene3D G3DSA:3.90.550.10 1 221 8.0E-31 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_05315 cdb6d0105a54c532fe5d0372c25c9ef5 299 SUPERFAMILY SSF53448 3 224 1.41E-36 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_42280 7ff739517fe0f6a79898bbea95043658 321 PRINTS PR00075 Fatty acid desaturase family 1 signature 60 82 1.9E-18 T 13-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 RAM_42280 7ff739517fe0f6a79898bbea95043658 321 PRINTS PR00075 Fatty acid desaturase family 1 signature 83 103 1.9E-18 T 13-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 RAM_42280 7ff739517fe0f6a79898bbea95043658 321 PRINTS PR00075 Fatty acid desaturase family 1 signature 263 277 1.9E-18 T 13-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 RAM_42280 7ff739517fe0f6a79898bbea95043658 321 PRINTS PR00075 Fatty acid desaturase family 1 signature 220 241 1.9E-18 T 13-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 RAM_42280 7ff739517fe0f6a79898bbea95043658 321 Pfam PF00487 Fatty acid desaturase 60 276 4.9E-21 T 13-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 RAM_38570 bb80b5fb0c3039723c13e33f89684356 523 Pfam PF05199 GMC oxidoreductase 462 513 6.2E-12 T 13-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 RAM_38570 bb80b5fb0c3039723c13e33f89684356 523 SUPERFAMILY SSF54373 339 467 9.81E-42 T 13-10-2018 RAM_38570 bb80b5fb0c3039723c13e33f89684356 523 SUPERFAMILY SSF51905 34 521 1.47E-38 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_38570 bb80b5fb0c3039723c13e33f89684356 523 Gene3D G3DSA:3.50.50.60 34 519 7.0E-188 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_38570 bb80b5fb0c3039723c13e33f89684356 523 Gene3D G3DSA:3.30.410.10 176 459 7.0E-188 T 13-10-2018 RAM_25050 41e7d02b6265e0117973a4aed5b29608 310 PIRSF PIRSF016839 4 310 2.6E-84 T 13-10-2018 IPR001559 Phosphotriesterase GO:0008270|GO:0009056 RAM_25050 41e7d02b6265e0117973a4aed5b29608 310 Gene3D G3DSA:3.20.20.140 2 306 4.9E-75 T 13-10-2018 RAM_25050 41e7d02b6265e0117973a4aed5b29608 310 SUPERFAMILY SSF51556 6 308 3.02E-59 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_25050 41e7d02b6265e0117973a4aed5b29608 310 Pfam PF02126 Phosphotriesterase family 14 305 6.5E-34 T 13-10-2018 IPR001559 Phosphotriesterase GO:0008270|GO:0009056 RAM_07650 bff97efeaebf969d6ae7919538997c75 299 Gene3D G3DSA:3.40.50.300 8 281 5.6E-61 T 13-10-2018 RAM_07650 bff97efeaebf969d6ae7919538997c75 299 ProSitePatterns PS00211 ABC transporters family signature. 131 145 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_07650 bff97efeaebf969d6ae7919538997c75 299 SUPERFAMILY SSF52540 4 221 2.8E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_07650 bff97efeaebf969d6ae7919538997c75 299 Pfam PF00005 ABC transporter 24 159 1.8E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_07650 bff97efeaebf969d6ae7919538997c75 299 SMART SM00382 31 207 3.3E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_05380 f18349b8f5c225d2f508f743784cd316 152 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 7 141 2.3E-9 T 13-10-2018 IPR019587 Polyketide cyclase/dehydrase RAM_05380 f18349b8f5c225d2f508f743784cd316 152 SUPERFAMILY SSF55961 6 144 3.74E-20 T 13-10-2018 RAM_05380 f18349b8f5c225d2f508f743784cd316 152 Gene3D G3DSA:3.30.530.20 6 147 8.4E-17 T 13-10-2018 IPR023393 START-like domain superfamily RAM_35015 67bba92d3c78c1db414e1568154fb558 516 SUPERFAMILY SSF51445 5 453 3.4E-123 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_35015 67bba92d3c78c1db414e1568154fb558 516 Pfam PF00128 Alpha amylase, catalytic domain 29 369 1.7E-84 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RAM_35015 67bba92d3c78c1db414e1568154fb558 516 Gene3D G3DSA:3.20.20.80 6 448 4.6E-153 T 13-10-2018 RAM_35015 67bba92d3c78c1db414e1568154fb558 516 SMART SM00642 14 393 8.7E-117 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RAM_35015 67bba92d3c78c1db414e1568154fb558 516 Gene3D G3DSA:3.90.400.10 106 178 4.6E-153 T 13-10-2018 RAM_35015 67bba92d3c78c1db414e1568154fb558 516 Pfam PF11941 Domain of unknown function (DUF3459) 439 515 4.7E-10 T 13-10-2018 IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) RAM_27535 e0f442986cdc2d8ad1116541e03933d5 342 Gene3D G3DSA:1.10.10.10 15 93 2.0E-8 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_27535 e0f442986cdc2d8ad1116541e03933d5 342 SUPERFAMILY SSF53335 135 330 3.5E-36 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_27535 e0f442986cdc2d8ad1116541e03933d5 342 SUPERFAMILY SSF46785 21 92 8.17E-8 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_27535 e0f442986cdc2d8ad1116541e03933d5 342 Gene3D G3DSA:3.40.50.150 102 341 4.9E-49 T 13-10-2018 RAM_27535 e0f442986cdc2d8ad1116541e03933d5 342 Pfam PF00891 O-methyltransferase 135 328 2.7E-43 T 13-10-2018 IPR001077 O-methyltransferase, family 2 GO:0008171 RAM_29435 400a74a5e3e772d1a158fe815c3180fe 323 SMART SM01092 221 319 3.4E-23 T 13-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal RAM_29435 400a74a5e3e772d1a158fe815c3180fe 323 SUPERFAMILY SSF55447 221 318 3.79E-24 T 13-10-2018 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily RAM_29435 400a74a5e3e772d1a158fe815c3180fe 323 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 223 312 1.3E-13 T 13-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal RAM_29435 400a74a5e3e772d1a158fe815c3180fe 323 Gene3D G3DSA:3.30.390.50 219 320 1.0E-23 T 13-10-2018 RAM_29435 400a74a5e3e772d1a158fe815c3180fe 323 SUPERFAMILY SSF56176 1 214 1.8E-54 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RAM_29435 400a74a5e3e772d1a158fe815c3180fe 323 Gene3D G3DSA:3.30.465.10 1 215 1.9E-73 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 RAM_29435 400a74a5e3e772d1a158fe815c3180fe 323 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 3 214 1.3E-43 T 13-10-2018 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 RAM_09110 d84fdba21f970c6d156ddbae527d478f 60 Pfam PF01783 Ribosomal L32p protein family 2 58 1.6E-22 T 13-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_09110 d84fdba21f970c6d156ddbae527d478f 60 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 2 57 16.575 T 13-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_09110 d84fdba21f970c6d156ddbae527d478f 60 SUPERFAMILY SSF57829 2 58 8.55E-17 T 13-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 RAM_09110 d84fdba21f970c6d156ddbae527d478f 60 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 58 5.8E-20 T 13-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_38670 e50013ae470719021ea8f38c63c6ae9c 392 Pfam PF02426 Muconolactone delta-isomerase 195 255 4.8E-6 T 13-10-2018 IPR026029 Muconolactone isomerase domain KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185 RAM_38670 e50013ae470719021ea8f38c63c6ae9c 392 Gene3D G3DSA:1.10.10.2840 260 389 3.2E-25 T 13-10-2018 RAM_38670 e50013ae470719021ea8f38c63c6ae9c 392 Pfam PF13556 PucR C-terminal helix-turn-helix domain 326 383 1.5E-21 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain RAM_38670 e50013ae470719021ea8f38c63c6ae9c 392 SUPERFAMILY SSF54909 197 270 2.31E-6 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_06120 f071bea6e73dd29d3833e29c8021de15 314 PIRSF PIRSF006431 1 314 2.6E-119 T 13-10-2018 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 RAM_06120 f071bea6e73dd29d3833e29c8021de15 314 Pfam PF00561 alpha/beta hydrolase fold 35 296 1.1E-26 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_06120 f071bea6e73dd29d3833e29c8021de15 314 TIGRFAM TIGR01249 pro_imino_pep_1: prolyl aminopeptidase 10 312 7.5E-105 T 13-10-2018 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 RAM_06120 f071bea6e73dd29d3833e29c8021de15 314 Gene3D G3DSA:3.40.50.1820 1 314 3.2E-97 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_06120 f071bea6e73dd29d3833e29c8021de15 314 SUPERFAMILY SSF53474 2 296 6.68E-59 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_06120 f071bea6e73dd29d3833e29c8021de15 314 PRINTS PR00111 Alpha/beta hydrolase fold signature 121 134 7.2E-6 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_06120 f071bea6e73dd29d3833e29c8021de15 314 PRINTS PR00111 Alpha/beta hydrolase fold signature 107 120 7.2E-6 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_06120 f071bea6e73dd29d3833e29c8021de15 314 PRINTS PR00111 Alpha/beta hydrolase fold signature 60 75 7.2E-6 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_06120 f071bea6e73dd29d3833e29c8021de15 314 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 37 45 1.7E-13 T 13-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 RAM_06120 f071bea6e73dd29d3833e29c8021de15 314 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 107 121 1.7E-13 T 13-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 RAM_06120 f071bea6e73dd29d3833e29c8021de15 314 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 63 74 1.7E-13 T 13-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 RAM_32695 19cf52b849186b3a6a52fe504c9a454d 277 Gene3D G3DSA:3.40.190.10 94 257 6.2E-50 T 13-10-2018 RAM_32695 19cf52b849186b3a6a52fe504c9a454d 277 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.2E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_32695 19cf52b849186b3a6a52fe504c9a454d 277 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.2E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_32695 19cf52b849186b3a6a52fe504c9a454d 277 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.2E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_32695 19cf52b849186b3a6a52fe504c9a454d 277 SUPERFAMILY SSF53850 87 276 1.43E-31 T 13-10-2018 RAM_32695 19cf52b849186b3a6a52fe504c9a454d 277 Pfam PF03466 LysR substrate binding domain 86 274 2.5E-31 T 13-10-2018 IPR005119 LysR, substrate-binding RAM_32695 19cf52b849186b3a6a52fe504c9a454d 277 Gene3D G3DSA:1.10.10.10 3 87 2.2E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_32695 19cf52b849186b3a6a52fe504c9a454d 277 Gene3D G3DSA:3.40.190.10 160 250 6.2E-50 T 13-10-2018 RAM_32695 19cf52b849186b3a6a52fe504c9a454d 277 SUPERFAMILY SSF46785 2 110 1.45E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_32695 19cf52b849186b3a6a52fe504c9a454d 277 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 1.8E-19 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_29470 b2d0ef87cfc51e3730305754166f7a4f 293 ProSitePatterns PS00063 Aldo/keto reductase family putative active site signature. 237 252 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 RAM_29470 b2d0ef87cfc51e3730305754166f7a4f 293 PIRSF PIRSF000097 111 286 7.2E-48 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_29470 b2d0ef87cfc51e3730305754166f7a4f 293 PIRSF PIRSF000097 1 117 5.5E-32 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_29470 b2d0ef87cfc51e3730305754166f7a4f 293 SUPERFAMILY SSF51430 1 273 1.03E-85 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_29470 b2d0ef87cfc51e3730305754166f7a4f 293 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 124 141 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 RAM_29470 b2d0ef87cfc51e3730305754166f7a4f 293 Pfam PF00248 Aldo/keto reductase family 22 268 1.2E-43 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain RAM_29470 b2d0ef87cfc51e3730305754166f7a4f 293 PRINTS PR00069 Aldo-keto reductase signature 158 187 6.6E-42 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_29470 b2d0ef87cfc51e3730305754166f7a4f 293 PRINTS PR00069 Aldo-keto reductase signature 124 141 6.6E-42 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_29470 b2d0ef87cfc51e3730305754166f7a4f 293 PRINTS PR00069 Aldo-keto reductase signature 35 59 6.6E-42 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_29470 b2d0ef87cfc51e3730305754166f7a4f 293 PRINTS PR00069 Aldo-keto reductase signature 91 109 6.6E-42 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_29470 b2d0ef87cfc51e3730305754166f7a4f 293 PRINTS PR00069 Aldo-keto reductase signature 204 228 6.6E-42 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_29470 b2d0ef87cfc51e3730305754166f7a4f 293 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 39 56 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 RAM_29470 b2d0ef87cfc51e3730305754166f7a4f 293 Gene3D G3DSA:3.20.20.100 1 283 7.8E-102 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_00700 a80173c101311641995b78b58632b926 345 Pfam PF14219 Domain of unknown function (DUF4328) 151 308 4.3E-33 T 13-10-2018 IPR025565 Domain of unknown function DUF4328 RAM_24365 cb2b219af2b9b9b5b1ea15b4f9a70707 393 Pfam PF13378 Enolase C-terminal domain-like 144 349 9.0E-45 T 13-10-2018 IPR029065 Enolase C-terminal domain-like RAM_24365 cb2b219af2b9b9b5b1ea15b4f9a70707 393 SMART SM00922 137 239 2.4E-15 T 13-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal RAM_24365 cb2b219af2b9b9b5b1ea15b4f9a70707 393 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 35 118 5.7E-9 T 13-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain RAM_24365 cb2b219af2b9b9b5b1ea15b4f9a70707 393 SUPERFAMILY SSF51604 106 353 2.36E-51 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RAM_24365 cb2b219af2b9b9b5b1ea15b4f9a70707 393 SUPERFAMILY SSF54826 1 120 4.71E-23 T 13-10-2018 RAM_24365 cb2b219af2b9b9b5b1ea15b4f9a70707 393 Gene3D G3DSA:3.30.390.10 1 115 3.7E-19 T 13-10-2018 IPR029017 Enolase-like, N-terminal RAM_24365 cb2b219af2b9b9b5b1ea15b4f9a70707 393 Gene3D G3DSA:3.20.20.120 116 347 1.5E-58 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RAM_03940 ed6183303138eaa069a4d60de368f4d1 503 SUPERFAMILY SSF54631 103 213 1.77E-29 T 13-10-2018 RAM_03940 ed6183303138eaa069a4d60de368f4d1 503 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 18 472 1.1E-179 T 13-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 RAM_03940 ed6183303138eaa069a4d60de368f4d1 503 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 305 317 - T 13-10-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 RAM_03940 ed6183303138eaa069a4d60de368f4d1 503 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 18 489 1.6E-151 T 13-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 RAM_03940 ed6183303138eaa069a4d60de368f4d1 503 SMART SM00116 167 215 3.2E-6 T 13-10-2018 IPR000644 CBS domain RAM_03940 ed6183303138eaa069a4d60de368f4d1 503 SMART SM00116 106 154 2.3E-6 T 13-10-2018 IPR000644 CBS domain RAM_03940 ed6183303138eaa069a4d60de368f4d1 503 Pfam PF00571 CBS domain 159 212 4.6E-7 T 13-10-2018 IPR000644 CBS domain RAM_03940 ed6183303138eaa069a4d60de368f4d1 503 Pfam PF00571 CBS domain 103 151 2.0E-7 T 13-10-2018 IPR000644 CBS domain RAM_03940 ed6183303138eaa069a4d60de368f4d1 503 PIRSF PIRSF000130 10 503 5.3E-197 T 13-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 RAM_03940 ed6183303138eaa069a4d60de368f4d1 503 Gene3D G3DSA:3.20.20.70 10 502 8.0E-205 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_03940 ed6183303138eaa069a4d60de368f4d1 503 SMART SM01240 17 489 1.3E-300 T 13-10-2018 RAM_03940 ed6183303138eaa069a4d60de368f4d1 503 SUPERFAMILY SSF51412 13 493 1.96E-114 T 13-10-2018 RAM_03940 ed6183303138eaa069a4d60de368f4d1 503 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 18 502 82.113 T 13-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 RAM_34605 23da43057802721570f33261b03cebb2 510 Gene3D G3DSA:1.10.287.130 203 335 1.8E-23 T 13-10-2018 RAM_34605 23da43057802721570f33261b03cebb2 510 SMART SM00387 379 491 2.7E-34 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_34605 23da43057802721570f33261b03cebb2 510 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 379 489 2.0E-21 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_34605 23da43057802721570f33261b03cebb2 510 SUPERFAMILY SSF55874 325 490 3.14E-38 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_34605 23da43057802721570f33261b03cebb2 510 PRINTS PR00344 Bacterial sensor protein C-terminal signature 475 488 5.7E-10 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_34605 23da43057802721570f33261b03cebb2 510 PRINTS PR00344 Bacterial sensor protein C-terminal signature 417 431 5.7E-10 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_34605 23da43057802721570f33261b03cebb2 510 PRINTS PR00344 Bacterial sensor protein C-terminal signature 435 445 5.7E-10 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_34605 23da43057802721570f33261b03cebb2 510 PRINTS PR00344 Bacterial sensor protein C-terminal signature 452 470 5.7E-10 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_34605 23da43057802721570f33261b03cebb2 510 SUPERFAMILY SSF47384 256 336 9.42E-19 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RAM_34605 23da43057802721570f33261b03cebb2 510 SMART SM00388 269 336 2.7E-20 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_34605 23da43057802721570f33261b03cebb2 510 SMART SM00304 199 261 3.1E-6 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_34605 23da43057802721570f33261b03cebb2 510 Pfam PF00512 His Kinase A (phospho-acceptor) domain 271 336 4.0E-18 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_34605 23da43057802721570f33261b03cebb2 510 Pfam PF00672 HAMP domain 199 255 4.7E-8 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_34605 23da43057802721570f33261b03cebb2 510 Gene3D G3DSA:3.30.565.10 341 493 1.1E-36 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_04760 63ca951ebd42c1eb815151bcb4819ed6 599 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 555 572 - T 13-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RAM_04760 63ca951ebd42c1eb815151bcb4819ed6 599 Gene3D G3DSA:2.40.50.100 530 599 7.8E-22 T 13-10-2018 RAM_04760 63ca951ebd42c1eb815151bcb4819ed6 599 SUPERFAMILY SSF51246 340 460 1.36E-35 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 RAM_04760 63ca951ebd42c1eb815151bcb4819ed6 599 SMART SM00878 346 456 1.8E-52 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RAM_04760 63ca951ebd42c1eb815151bcb4819ed6 599 SUPERFAMILY SSF52440 12 124 1.44E-46 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RAM_04760 63ca951ebd42c1eb815151bcb4819ed6 599 SUPERFAMILY SSF51230 529 598 1.14E-20 T 13-10-2018 IPR011053 Single hybrid motif RAM_04760 63ca951ebd42c1eb815151bcb4819ed6 599 Pfam PF00289 Biotin carboxylase, N-terminal domain 13 121 4.9E-43 T 13-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RAM_04760 63ca951ebd42c1eb815151bcb4819ed6 599 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 297 304 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RAM_04760 63ca951ebd42c1eb815151bcb4819ed6 599 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 126 334 5.0E-79 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RAM_04760 63ca951ebd42c1eb815151bcb4819ed6 599 Gene3D G3DSA:3.30.470.130 3 462 1.3E-177 T 13-10-2018 RAM_04760 63ca951ebd42c1eb815151bcb4819ed6 599 Pfam PF00364 Biotin-requiring enzyme 533 598 7.4E-18 T 13-10-2018 IPR000089 Biotin/lipoyl attachment RAM_04760 63ca951ebd42c1eb815151bcb4819ed6 599 SUPERFAMILY SSF56059 126 335 3.54E-60 T 13-10-2018 RAM_04760 63ca951ebd42c1eb815151bcb4819ed6 599 Pfam PF02785 Biotin carboxylase C-terminal domain 346 456 2.4E-34 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RAM_08115 74ae78a26b706b282597a52da3619d45 111 TIGRFAM TIGR03954 integ_memb_HG: integral membrane protein 1 83 7.1E-23 T 13-10-2018 IPR023845 Domain of unknown function DUF3817, transmembrane RAM_08115 74ae78a26b706b282597a52da3619d45 111 Pfam PF12823 Domain of unknown function (DUF3817) 1 84 5.2E-22 T 13-10-2018 IPR023845 Domain of unknown function DUF3817, transmembrane RAM_03800 a5a2e7fc75185ce5d1abf216167886c5 442 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 240 298 2.7E-7 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RAM_03800 a5a2e7fc75185ce5d1abf216167886c5 442 SUPERFAMILY SSF52096 232 440 1.01E-44 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_03800 a5a2e7fc75185ce5d1abf216167886c5 442 Gene3D G3DSA:3.90.226.10 4 222 1.6E-49 T 13-10-2018 RAM_03800 a5a2e7fc75185ce5d1abf216167886c5 442 SUPERFAMILY SSF52096 3 220 3.27E-43 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_03800 a5a2e7fc75185ce5d1abf216167886c5 442 Pfam PF01039 Carboxyl transferase domain 47 196 2.0E-11 T 13-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 RAM_03800 a5a2e7fc75185ce5d1abf216167886c5 442 Pfam PF01039 Carboxyl transferase domain 306 410 7.8E-10 T 13-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 RAM_03800 a5a2e7fc75185ce5d1abf216167886c5 442 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 145 162 2.6E-13 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RAM_03800 a5a2e7fc75185ce5d1abf216167886c5 442 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 108 126 2.6E-13 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RAM_03800 a5a2e7fc75185ce5d1abf216167886c5 442 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 74 88 2.6E-13 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RAM_03800 a5a2e7fc75185ce5d1abf216167886c5 442 Gene3D G3DSA:3.90.226.10 230 442 2.1E-54 T 13-10-2018 RAM_25100 37b8578747faecfcda67faab5c8da235 258 SUPERFAMILY SSF89082 160 248 4.71E-14 T 13-10-2018 IPR036244 TipA-like multidrug resistance regulator, antibiotic-recognition domain RAM_25100 37b8578747faecfcda67faab5c8da235 258 SMART SM00422 3 72 2.0E-22 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_25100 37b8578747faecfcda67faab5c8da235 258 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 4 15 5.8E-7 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_25100 37b8578747faecfcda67faab5c8da235 258 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 15 28 5.8E-7 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_25100 37b8578747faecfcda67faab5c8da235 258 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 39 59 5.8E-7 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_25100 37b8578747faecfcda67faab5c8da235 258 Gene3D G3DSA:1.10.1660.10 1 138 3.6E-31 T 13-10-2018 RAM_25100 37b8578747faecfcda67faab5c8da235 258 Pfam PF07739 TipAS antibiotic-recognition domain 137 246 4.6E-18 T 13-10-2018 IPR012925 TipAS antibiotic-recognition domain RAM_25100 37b8578747faecfcda67faab5c8da235 258 ProSitePatterns PS00552 MerR-type HTH domain signature. 6 28 - T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_25100 37b8578747faecfcda67faab5c8da235 258 Pfam PF00376 MerR family regulatory protein 4 41 1.6E-13 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_25100 37b8578747faecfcda67faab5c8da235 258 Gene3D G3DSA:1.10.490.50 160 250 3.8E-14 T 13-10-2018 IPR036244 TipA-like multidrug resistance regulator, antibiotic-recognition domain RAM_25100 37b8578747faecfcda67faab5c8da235 258 SUPERFAMILY SSF46955 3 107 5.86E-26 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily RAM_25100 37b8578747faecfcda67faab5c8da235 258 Pfam PF09278 MerR, DNA binding 48 100 8.8E-6 T 13-10-2018 IPR015358 Transcription regulator MerR, DNA binding RAM_05740 87decd4fc034ed5c0804a386351c8b00 322 Pfam PF13280 WYL domain 140 317 4.8E-42 T 13-10-2018 IPR026881 WYL domain RAM_05740 87decd4fc034ed5c0804a386351c8b00 322 PIRSF PIRSF016838 68 319 7.9E-12 T 13-10-2018 IPR028349 Protein PafC RAM_05740 87decd4fc034ed5c0804a386351c8b00 322 PIRSF PIRSF016838 1 53 2.1E-4 T 13-10-2018 IPR028349 Protein PafC RAM_05740 87decd4fc034ed5c0804a386351c8b00 322 SUPERFAMILY SSF46785 2 59 2.78E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_05740 87decd4fc034ed5c0804a386351c8b00 322 Gene3D G3DSA:1.10.10.10 1 64 4.0E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_05740 87decd4fc034ed5c0804a386351c8b00 322 Pfam PF08279 HTH domain 5 60 9.2E-19 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 RAM_34570 c1277a333f789760df1aa72e9b1fa4c3 431 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 319 397 6.9E-16 T 13-10-2018 IPR019489 Clp ATPase, C-terminal RAM_34570 c1277a333f789760df1aa72e9b1fa4c3 431 SMART SM00382 115 268 4.4E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_34570 c1277a333f789760df1aa72e9b1fa4c3 431 Pfam PF06689 ClpX C4-type zinc finger 12 48 1.7E-20 T 13-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 RAM_34570 c1277a333f789760df1aa72e9b1fa4c3 431 Gene3D G3DSA:3.30.50.30 3 50 5.5E-24 T 13-10-2018 IPR038366 Zinc finger, ClpX C4-type superfamily RAM_34570 c1277a333f789760df1aa72e9b1fa4c3 431 SUPERFAMILY SSF57716 11 46 1.38E-11 T 13-10-2018 RAM_34570 c1277a333f789760df1aa72e9b1fa4c3 431 Pfam PF07724 AAA domain (Cdc48 subfamily) 116 312 2.1E-50 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RAM_34570 c1277a333f789760df1aa72e9b1fa4c3 431 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 2 417 52.19 T 13-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 RAM_34570 c1277a333f789760df1aa72e9b1fa4c3 431 Gene3D G3DSA:1.10.8.60 318 426 1.1E-38 T 13-10-2018 RAM_34570 c1277a333f789760df1aa72e9b1fa4c3 431 SUPERFAMILY SSF52540 59 407 1.19E-73 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_34570 c1277a333f789760df1aa72e9b1fa4c3 431 Gene3D G3DSA:3.40.50.300 54 316 2.0E-107 T 13-10-2018 RAM_34570 c1277a333f789760df1aa72e9b1fa4c3 431 SMART SM00994 10 49 1.1E-23 T 13-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 RAM_34570 c1277a333f789760df1aa72e9b1fa4c3 431 SMART SM01086 319 413 4.4E-32 T 13-10-2018 IPR019489 Clp ATPase, C-terminal RAM_34570 c1277a333f789760df1aa72e9b1fa4c3 431 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 9 413 1.2E-195 T 13-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 RAM_13860 afc228204d614a443615e9b5633ac2d2 262 SMART SM00345 24 82 6.8E-13 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_13860 afc228204d614a443615e9b5633ac2d2 262 Pfam PF00392 Bacterial regulatory proteins, gntR family 27 81 9.8E-17 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_13860 afc228204d614a443615e9b5633ac2d2 262 Pfam PF07702 UTRA domain 103 240 1.0E-35 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RAM_13860 afc228204d614a443615e9b5633ac2d2 262 SMART SM00866 102 240 1.8E-40 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RAM_13860 afc228204d614a443615e9b5633ac2d2 262 Gene3D G3DSA:3.40.1410.10 84 249 2.6E-46 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RAM_13860 afc228204d614a443615e9b5633ac2d2 262 SUPERFAMILY SSF64288 70 248 1.16E-49 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RAM_13860 afc228204d614a443615e9b5633ac2d2 262 Gene3D G3DSA:1.10.10.10 17 83 3.8E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_13860 afc228204d614a443615e9b5633ac2d2 262 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 42 56 1.9E-11 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_13860 afc228204d614a443615e9b5633ac2d2 262 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 56 72 1.9E-11 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_13860 afc228204d614a443615e9b5633ac2d2 262 SUPERFAMILY SSF46785 16 91 7.28E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_35130 514b8dc7c712185366f008e4bbd56264 152 SUPERFAMILY SSF54427 18 144 1.99E-30 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_35130 514b8dc7c712185366f008e4bbd56264 152 TIGRFAM TIGR02246 TIGR02246: conserved hypothetical protein 21 144 1.9E-32 T 13-10-2018 IPR011944 Steroid delta5-4-isomerase KEGG: 00140+5.3.3.1|KEGG: 00984+5.3.3.1|MetaCyc: PWY-2582|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-699|MetaCyc: PWY-7299 RAM_35130 514b8dc7c712185366f008e4bbd56264 152 Gene3D G3DSA:3.10.450.50 16 146 1.1E-33 T 13-10-2018 RAM_35130 514b8dc7c712185366f008e4bbd56264 152 Pfam PF14534 Domain of unknown function (DUF4440) 33 134 1.1E-7 T 13-10-2018 IPR027843 Domain of unknown function DUF4440 RAM_35110 514b8dc7c712185366f008e4bbd56264 152 SUPERFAMILY SSF54427 18 144 1.99E-30 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_35110 514b8dc7c712185366f008e4bbd56264 152 TIGRFAM TIGR02246 TIGR02246: conserved hypothetical protein 21 144 1.9E-32 T 13-10-2018 IPR011944 Steroid delta5-4-isomerase KEGG: 00140+5.3.3.1|KEGG: 00984+5.3.3.1|MetaCyc: PWY-2582|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-699|MetaCyc: PWY-7299 RAM_35110 514b8dc7c712185366f008e4bbd56264 152 Gene3D G3DSA:3.10.450.50 16 146 1.1E-33 T 13-10-2018 RAM_35110 514b8dc7c712185366f008e4bbd56264 152 Pfam PF14534 Domain of unknown function (DUF4440) 33 134 1.1E-7 T 13-10-2018 IPR027843 Domain of unknown function DUF4440 RAM_13365 91bc0f66e38857d8a888fdeebfc9f463 703 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 516 598 3.8E-12 T 13-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RAM_13365 91bc0f66e38857d8a888fdeebfc9f463 703 Gene3D G3DSA:3.90.226.10 20 323 2.9E-52 T 13-10-2018 RAM_13365 91bc0f66e38857d8a888fdeebfc9f463 703 SUPERFAMILY SSF48179 627 688 1.02E-10 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RAM_13365 91bc0f66e38857d8a888fdeebfc9f463 703 SUPERFAMILY SSF48179 515 617 1.02E-15 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RAM_13365 91bc0f66e38857d8a888fdeebfc9f463 703 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 333 512 4.6E-56 T 13-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RAM_13365 91bc0f66e38857d8a888fdeebfc9f463 703 Pfam PF00378 Enoyl-CoA hydratase/isomerase 32 230 3.7E-25 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RAM_13365 91bc0f66e38857d8a888fdeebfc9f463 703 SUPERFAMILY SSF52096 30 321 3.73E-41 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_13365 91bc0f66e38857d8a888fdeebfc9f463 703 SUPERFAMILY SSF51735 330 512 3.48E-51 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_13365 91bc0f66e38857d8a888fdeebfc9f463 703 Gene3D G3DSA:3.40.50.720 324 517 7.0E-60 T 13-10-2018 RAM_13365 91bc0f66e38857d8a888fdeebfc9f463 703 Gene3D G3DSA:1.10.1040.50 518 694 2.2E-34 T 13-10-2018 RAM_17595 6a61acfb25deebe21d56ab3cb64aeee1 367 SUPERFAMILY SSF54826 2 124 9.43E-29 T 13-10-2018 RAM_17595 6a61acfb25deebe21d56ab3cb64aeee1 367 SMART SM00922 142 235 1.2E-20 T 13-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal RAM_17595 6a61acfb25deebe21d56ab3cb64aeee1 367 TIGRFAM TIGR01928 menC_lowGC/arch: o-succinylbenzoate synthase 10 331 2.7E-92 T 13-10-2018 IPR010197 o-Succinylbenzoate synthase, MenC type 2 GO:0009234|GO:0016829 KEGG: 00130+4.2.1.113|MetaCyc: PWY-5837 RAM_17595 6a61acfb25deebe21d56ab3cb64aeee1 367 Pfam PF13378 Enolase C-terminal domain-like 152 352 1.8E-45 T 13-10-2018 IPR029065 Enolase C-terminal domain-like RAM_17595 6a61acfb25deebe21d56ab3cb64aeee1 367 SUPERFAMILY SSF51604 123 359 4.85E-64 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RAM_17595 6a61acfb25deebe21d56ab3cb64aeee1 367 Gene3D G3DSA:3.30.390.10 6 115 2.3E-139 T 13-10-2018 IPR029017 Enolase-like, N-terminal RAM_17595 6a61acfb25deebe21d56ab3cb64aeee1 367 Gene3D G3DSA:3.20.20.120 116 349 2.3E-139 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RAM_17595 6a61acfb25deebe21d56ab3cb64aeee1 367 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 6 121 4.2E-11 T 13-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain RAM_17595 6a61acfb25deebe21d56ab3cb64aeee1 367 Hamap MF_01933 o-succinylbenzoate synthase [menC]. 1 359 40.931 T 13-10-2018 IPR010197 o-Succinylbenzoate synthase, MenC type 2 GO:0009234|GO:0016829 KEGG: 00130+4.2.1.113|MetaCyc: PWY-5837 RAM_12295 95d426e6a18b0a5e7bb6f24c161ceb1d 281 Gene3D G3DSA:3.40.250.10 1 149 1.3E-45 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily RAM_12295 95d426e6a18b0a5e7bb6f24c161ceb1d 281 Gene3D G3DSA:3.40.250.10 156 273 1.5E-33 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily RAM_12295 95d426e6a18b0a5e7bb6f24c161ceb1d 281 Pfam PF00581 Rhodanese-like domain 14 128 3.8E-16 T 13-10-2018 IPR001763 Rhodanese-like domain RAM_12295 95d426e6a18b0a5e7bb6f24c161ceb1d 281 Pfam PF00581 Rhodanese-like domain 158 268 2.5E-12 T 13-10-2018 IPR001763 Rhodanese-like domain RAM_12295 95d426e6a18b0a5e7bb6f24c161ceb1d 281 SMART SM00450 6 132 1.1E-22 T 13-10-2018 IPR001763 Rhodanese-like domain RAM_12295 95d426e6a18b0a5e7bb6f24c161ceb1d 281 SMART SM00450 153 272 4.0E-14 T 13-10-2018 IPR001763 Rhodanese-like domain RAM_12295 95d426e6a18b0a5e7bb6f24c161ceb1d 281 SUPERFAMILY SSF52821 3 149 1.13E-38 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily RAM_12295 95d426e6a18b0a5e7bb6f24c161ceb1d 281 SUPERFAMILY SSF52821 151 278 9.43E-33 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily RAM_09510 6ceee24eb016402ec67ff1d380a8554f 407 SUPERFAMILY SSF55073 246 406 2.9E-44 T 13-10-2018 IPR029787 Nucleotide cyclase RAM_09510 6ceee24eb016402ec67ff1d380a8554f 407 Pfam PF00990 Diguanylate cyclase, GGDEF domain 240 404 2.5E-41 T 13-10-2018 IPR000160 GGDEF domain RAM_09510 6ceee24eb016402ec67ff1d380a8554f 407 Gene3D G3DSA:3.30.70.270 233 407 5.5E-54 T 13-10-2018 RAM_09510 6ceee24eb016402ec67ff1d380a8554f 407 SMART SM00267 229 407 6.1E-48 T 13-10-2018 IPR000160 GGDEF domain RAM_09510 6ceee24eb016402ec67ff1d380a8554f 407 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 236 406 2.5E-46 T 13-10-2018 IPR000160 GGDEF domain RAM_16180 7f3c6066c6f0f04b0750bca0ea850ec3 187 Pfam PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain 9 128 3.1E-11 T 13-10-2018 IPR024344 Mycothiol-dependent maleylpyruvate isomerase, metal-binding domain GO:0046872 RAM_16180 7f3c6066c6f0f04b0750bca0ea850ec3 187 SUPERFAMILY SSF109854 6 131 1.28E-13 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_16180 7f3c6066c6f0f04b0750bca0ea850ec3 187 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 8 181 1.4E-14 T 13-10-2018 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type RAM_16180 7f3c6066c6f0f04b0750bca0ea850ec3 187 Gene3D G3DSA:1.20.120.450 3 131 2.6E-11 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_04740 589b42695b59659ecf467048d4d77300 173 Gene3D G3DSA:3.40.630.30 1 159 4.5E-29 T 13-10-2018 RAM_04740 589b42695b59659ecf467048d4d77300 173 SUPERFAMILY SSF55729 10 155 5.41E-29 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_04740 589b42695b59659ecf467048d4d77300 173 Pfam PF13302 Acetyltransferase (GNAT) domain 19 151 1.4E-21 T 13-10-2018 IPR000182 GNAT domain RAM_24910 19174a1869eae7a6c3c90a059b0ada10 284 Hamap MF_02113_B Proteasome subunit beta [prcB]. 8 281 47.347 T 13-10-2018 IPR022483 Peptidase T1A, proteasome beta-subunit, actinobacteria GO:0004298|GO:0005839|GO:0010498 RAM_24910 19174a1869eae7a6c3c90a059b0ada10 284 Pfam PF00227 Proteasome subunit 52 236 8.4E-29 T 13-10-2018 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1234176|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-382556|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5678895|Reactome: R-HSA-5687128|Reactome: R-HSA-5689603|Reactome: R-HSA-5689880|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-8854050|Reactome: R-HSA-8939236|Reactome: R-HSA-8939902|Reactome: R-HSA-8941858|Reactome: R-HSA-8948751|Reactome: R-HSA-8951664|Reactome: R-HSA-9010553|Reactome: R-HSA-9020702|Reactome: R-HSA-9604323|Reactome: R-HSA-983168 RAM_24910 19174a1869eae7a6c3c90a059b0ada10 284 Gene3D G3DSA:3.60.20.10 54 283 1.1E-79 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RAM_24910 19174a1869eae7a6c3c90a059b0ada10 284 SUPERFAMILY SSF56235 17 265 3.05E-51 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RAM_24910 19174a1869eae7a6c3c90a059b0ada10 284 TIGRFAM TIGR03690 20S_bact_beta: proteasome, beta subunit 50 275 7.4E-102 T 13-10-2018 IPR022483 Peptidase T1A, proteasome beta-subunit, actinobacteria GO:0004298|GO:0005839|GO:0010498 RAM_44820 c95c487f6656e5cf0097a9d89725846d 206 SUPERFAMILY SSF53335 1 165 9.31E-27 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_44820 c95c487f6656e5cf0097a9d89725846d 206 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 1 28 - T 13-10-2018 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 RAM_44820 c95c487f6656e5cf0097a9d89725846d 206 Pfam PF08241 Methyltransferase domain 2 91 1.1E-18 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 RAM_44820 c95c487f6656e5cf0097a9d89725846d 206 Gene3D G3DSA:3.40.50.150 1 190 1.3E-31 T 13-10-2018 RAM_07205 41e3e801c62bde56032f1c5a6fec4ab4 251 Gene3D G3DSA:1.20.120.450 78 241 3.6E-5 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_07205 41e3e801c62bde56032f1c5a6fec4ab4 251 SUPERFAMILY SSF109854 91 208 1.74E-8 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_07205 41e3e801c62bde56032f1c5a6fec4ab4 251 Pfam PF12867 DinB superfamily 94 239 4.8E-14 T 13-10-2018 IPR024775 DinB-like domain RAM_31505 f974eeff048c9ad32be530d396078115 174 Pfam PF11611 Domain of unknown function (DUF4352) 48 161 1.1E-7 T 13-10-2018 IPR029051 Domain of unknown function DUF4352 RAM_23425 1603e8bbb5682d350beeb734fa501431 1137 Pfam PF13087 AAA domain 1015 1104 1.0E-9 T 13-10-2018 RAM_23425 1603e8bbb5682d350beeb734fa501431 1137 Gene3D G3DSA:3.40.50.300 808 905 5.2E-11 T 13-10-2018 RAM_23425 1603e8bbb5682d350beeb734fa501431 1137 SUPERFAMILY SSF52540 377 1110 1.3E-31 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_23425 1603e8bbb5682d350beeb734fa501431 1137 Gene3D G3DSA:3.40.50.300 947 1131 4.5E-22 T 13-10-2018 RAM_23425 1603e8bbb5682d350beeb734fa501431 1137 Pfam PF13086 AAA domain 830 886 2.0E-8 T 13-10-2018 RAM_33785 eef9c216abd3d7c119013b09cc2ab834 255 SUPERFAMILY SSF53335 9 246 1.17E-28 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_33785 eef9c216abd3d7c119013b09cc2ab834 255 Gene3D G3DSA:1.10.150.290 128 234 1.9E-77 T 13-10-2018 IPR023149 Trans-aconitate 2-methyltransferase, C-terminal GO:0030798 RAM_33785 eef9c216abd3d7c119013b09cc2ab834 255 Pfam PF13489 Methyltransferase domain 14 180 7.6E-14 T 13-10-2018 RAM_33785 eef9c216abd3d7c119013b09cc2ab834 255 Gene3D G3DSA:3.40.50.150 7 251 1.9E-77 T 13-10-2018 RAM_44795 1895a808cb727f59ac3c4a6c5ba786c8 274 Pfam PF11575 FhuF 2Fe-2S C-terminal domain 250 270 7.6E-5 T 13-10-2018 IPR024726 Ferric iron reductase, C-terminal GO:0051537 RAM_40590 6f6cc0ade9d8be4aa6509086c172bd6e 375 Gene3D G3DSA:3.40.50.300 85 328 2.2E-22 T 13-10-2018 RAM_40590 6f6cc0ade9d8be4aa6509086c172bd6e 375 SMART SM00382 101 294 1.0E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_40590 6f6cc0ade9d8be4aa6509086c172bd6e 375 Pfam PF07728 AAA domain (dynein-related subfamily) 105 282 9.5E-9 T 13-10-2018 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 RAM_40590 6f6cc0ade9d8be4aa6509086c172bd6e 375 SUPERFAMILY SSF52540 93 330 2.07E-25 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_02785 b52155b328acac3e2c07dfc56f642b77 136 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 16 35 2.5E-6 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_02785 b52155b328acac3e2c07dfc56f642b77 136 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 5 16 2.5E-6 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_02785 b52155b328acac3e2c07dfc56f642b77 136 ProSitePatterns PS00519 AsnC-type HTH domain signature. 7 33 - T 13-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site RAM_02785 b52155b328acac3e2c07dfc56f642b77 136 Gene3D G3DSA:3.30.70.920 42 123 8.5E-19 T 13-10-2018 RAM_02785 b52155b328acac3e2c07dfc56f642b77 136 Pfam PF01037 Lrp/AsnC ligand binding domain 55 126 2.6E-13 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RAM_02785 b52155b328acac3e2c07dfc56f642b77 136 SUPERFAMILY SSF46785 2 49 5.96E-11 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_02785 b52155b328acac3e2c07dfc56f642b77 136 Gene3D G3DSA:1.10.10.10 1 40 3.7E-12 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_02785 b52155b328acac3e2c07dfc56f642b77 136 SMART SM00344 1 96 9.1E-29 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RAM_02785 b52155b328acac3e2c07dfc56f642b77 136 Pfam PF13404 AsnC-type helix-turn-helix domain 2 29 3.8E-9 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_02785 b52155b328acac3e2c07dfc56f642b77 136 SUPERFAMILY SSF54909 49 132 2.82E-15 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_40290 19a97d240dbd22b935619b9b7b77f18d 219 Gene3D G3DSA:1.10.357.10 17 216 3.5E-32 T 13-10-2018 RAM_40290 19a97d240dbd22b935619b9b7b77f18d 219 SUPERFAMILY SSF46689 19 89 3.23E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_40290 19a97d240dbd22b935619b9b7b77f18d 219 Pfam PF00440 Bacterial regulatory proteins, tetR family 24 66 7.3E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_40290 19a97d240dbd22b935619b9b7b77f18d 219 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 24 37 3.2E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_40290 19a97d240dbd22b935619b9b7b77f18d 219 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 45 68 3.2E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_40290 19a97d240dbd22b935619b9b7b77f18d 219 Pfam PF13977 BetI-type transcriptional repressor, C-terminal 97 211 2.8E-12 T 13-10-2018 IPR039538 BetI-type transcriptional repressor, C-terminal RAM_40290 19a97d240dbd22b935619b9b7b77f18d 219 SUPERFAMILY SSF48498 96 211 4.13E-16 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_19960 7116ab88880fbb78fe0307026bf22b90 268 SUPERFAMILY SSF100950 83 240 2.09E-25 T 13-10-2018 IPR037171 NagB/RpiA transferase-like RAM_19960 7116ab88880fbb78fe0307026bf22b90 268 Pfam PF00455 DeoR C terminal sensor domain 82 239 3.6E-47 T 13-10-2018 IPR014036 DeoR C-terminal sensor domain RAM_19960 7116ab88880fbb78fe0307026bf22b90 268 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 45 63 1.2E-9 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RAM_19960 7116ab88880fbb78fe0307026bf22b90 268 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 31 45 1.2E-9 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RAM_19960 7116ab88880fbb78fe0307026bf22b90 268 ProSitePatterns PS00894 DeoR-type HTH domain signature. 13 47 - T 13-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 RAM_19960 7116ab88880fbb78fe0307026bf22b90 268 SUPERFAMILY SSF46785 12 70 2.7E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_19960 7116ab88880fbb78fe0307026bf22b90 268 SMART SM00420 13 65 4.2E-17 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RAM_19960 7116ab88880fbb78fe0307026bf22b90 268 SMART SM01134 79 241 1.2E-57 T 13-10-2018 RAM_19960 7116ab88880fbb78fe0307026bf22b90 268 Pfam PF08220 DeoR-like helix-turn-helix domain 13 64 9.3E-18 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RAM_19960 7116ab88880fbb78fe0307026bf22b90 268 Gene3D G3DSA:1.10.10.10 10 96 9.5E-7 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_36205 cdd98264b8db06e1fd8df241b23138d3 253 Gene3D G3DSA:3.30.950.10 111 231 1.1E-36 T 13-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 RAM_36205 cdd98264b8db06e1fd8df241b23138d3 253 TIGRFAM TIGR01465 cobM_cbiF: precorrin-4 C11-methyltransferase 3 242 3.7E-81 T 13-10-2018 IPR006362 Cobalamin (vitamin B12) biosynthesis CobM/CbiF, precorrin-4 C11-methyltransferase GO:0009236|GO:0046026 RAM_36205 cdd98264b8db06e1fd8df241b23138d3 253 Gene3D G3DSA:3.40.1010.10 1 110 1.3E-29 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 RAM_36205 cdd98264b8db06e1fd8df241b23138d3 253 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 6 20 - T 13-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RAM_36205 cdd98264b8db06e1fd8df241b23138d3 253 SUPERFAMILY SSF53790 2 231 1.11E-59 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 RAM_36205 cdd98264b8db06e1fd8df241b23138d3 253 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 3 208 1.1E-40 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 RAM_36205 cdd98264b8db06e1fd8df241b23138d3 253 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 76 109 - T 13-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RAM_09050 d1d66d4161cc67acfd8325324027bff0 459 Gene3D G3DSA:3.40.30.120 373 458 3.4E-15 T 13-10-2018 RAM_09050 d1d66d4161cc67acfd8325324027bff0 459 Gene3D G3DSA:3.50.50.60 3 328 1.6E-91 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_09050 d1d66d4161cc67acfd8325324027bff0 459 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 263 278 6.4E-33 T 13-10-2018 RAM_09050 d1d66d4161cc67acfd8325324027bff0 459 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 295 313 6.4E-33 T 13-10-2018 RAM_09050 d1d66d4161cc67acfd8325324027bff0 459 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 137 152 6.4E-33 T 13-10-2018 RAM_09050 d1d66d4161cc67acfd8325324027bff0 459 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 313 329 6.4E-33 T 13-10-2018 RAM_09050 d1d66d4161cc67acfd8325324027bff0 459 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 2 24 6.4E-33 T 13-10-2018 RAM_09050 d1d66d4161cc67acfd8325324027bff0 459 SUPERFAMILY SSF51905 1 342 4.6E-46 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_09050 d1d66d4161cc67acfd8325324027bff0 459 Pfam PF01494 FAD binding domain 2 327 5.7E-64 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_09050 d1d66d4161cc67acfd8325324027bff0 459 Gene3D G3DSA:3.30.70.2450 166 252 1.6E-91 T 13-10-2018 RAM_17425 ef5f500e6dc77f06a71573b0e4ffb529 217 Pfam PF13649 Methyltransferase domain 57 145 3.9E-19 T 13-10-2018 RAM_17425 ef5f500e6dc77f06a71573b0e4ffb529 217 SUPERFAMILY SSF53335 16 204 9.07E-33 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_17425 ef5f500e6dc77f06a71573b0e4ffb529 217 Gene3D G3DSA:3.40.50.150 11 214 8.0E-50 T 13-10-2018 RAM_14450 6fdabde567ddfab10f4c21e12c2b6808 123 SUPERFAMILY SSF54593 7 122 1.27E-8 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_14450 6fdabde567ddfab10f4c21e12c2b6808 123 Gene3D G3DSA:3.10.180.10 1 123 8.8E-28 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_38315 cbe943248214b86be02b6748985c7d0b 135 SMART SM00345 22 81 1.3E-12 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_38315 cbe943248214b86be02b6748985c7d0b 135 SUPERFAMILY SSF46785 11 84 1.9E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_38315 cbe943248214b86be02b6748985c7d0b 135 Gene3D G3DSA:1.10.10.10 16 133 8.5E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_38315 cbe943248214b86be02b6748985c7d0b 135 Pfam PF00392 Bacterial regulatory proteins, gntR family 18 81 1.9E-15 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_28790 5cdc108695491ead3b48f4a39e80be0c 400 SUPERFAMILY SSF53474 5 397 9.78E-92 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_28790 5cdc108695491ead3b48f4a39e80be0c 400 Gene3D G3DSA:3.40.50.1820 10 400 5.2E-126 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_28790 5cdc108695491ead3b48f4a39e80be0c 400 Pfam PF06441 Epoxide hydrolase N terminus 12 117 3.6E-34 T 13-10-2018 IPR010497 Epoxide hydrolase, N-terminal Reactome: R-HSA-211945 RAM_28790 5cdc108695491ead3b48f4a39e80be0c 400 PRINTS PR00412 Epoxide hydrolase signature 341 357 1.7E-9 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_28790 5cdc108695491ead3b48f4a39e80be0c 400 PRINTS PR00412 Epoxide hydrolase signature 373 395 1.7E-9 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_28790 5cdc108695491ead3b48f4a39e80be0c 400 PRINTS PR00412 Epoxide hydrolase signature 108 126 1.7E-9 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_28790 5cdc108695491ead3b48f4a39e80be0c 400 PRINTS PR00412 Epoxide hydrolase signature 137 152 1.7E-9 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_28790 5cdc108695491ead3b48f4a39e80be0c 400 PIRSF PIRSF001112 1 400 3.4E-132 T 13-10-2018 IPR016292 Epoxide hydrolase GO:0033961 Reactome: R-HSA-211945 RAM_33550 e772d2215f933938b11170360e994ccf 388 Gene3D G3DSA:3.30.450.40 135 308 3.8E-15 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_33550 e772d2215f933938b11170360e994ccf 388 SUPERFAMILY SSF52172 298 370 1.54E-9 T 13-10-2018 IPR011006 CheY-like superfamily RAM_33550 e772d2215f933938b11170360e994ccf 388 Pfam PF01740 STAS domain 2 92 2.9E-9 T 13-10-2018 IPR002645 STAS domain RAM_33550 e772d2215f933938b11170360e994ccf 388 Gene3D G3DSA:1.10.10.10 317 374 4.0E-11 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_33550 e772d2215f933938b11170360e994ccf 388 SUPERFAMILY SSF55781 157 316 6.38E-15 T 13-10-2018 RAM_33550 e772d2215f933938b11170360e994ccf 388 Gene3D G3DSA:3.30.750.24 1 97 6.2E-21 T 13-10-2018 IPR036513 STAS domain superfamily RAM_33550 e772d2215f933938b11170360e994ccf 388 SUPERFAMILY SSF52091 2 95 5.49E-14 T 13-10-2018 IPR036513 STAS domain superfamily RAM_33550 e772d2215f933938b11170360e994ccf 388 Pfam PF03861 ANTAR domain 318 369 7.9E-20 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 RAM_33550 e772d2215f933938b11170360e994ccf 388 SMART SM01012 315 370 3.4E-21 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 RAM_19880 74de16c337139a42610843d285e4e9e2 869 Pfam PF00196 Bacterial regulatory proteins, luxR family 799 854 2.8E-15 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_19880 74de16c337139a42610843d285e4e9e2 869 Gene3D G3DSA:1.10.10.10 795 860 6.3E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_19880 74de16c337139a42610843d285e4e9e2 869 SUPERFAMILY SSF52540 23 220 1.89E-6 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_19880 74de16c337139a42610843d285e4e9e2 869 Gene3D G3DSA:1.25.40.10 435 774 9.4E-10 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_19880 74de16c337139a42610843d285e4e9e2 869 SMART SM00421 797 854 1.3E-19 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_19880 74de16c337139a42610843d285e4e9e2 869 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 830 842 3.5E-6 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_19880 74de16c337139a42610843d285e4e9e2 869 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 800 814 3.5E-6 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_19880 74de16c337139a42610843d285e4e9e2 869 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 814 830 3.5E-6 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_19880 74de16c337139a42610843d285e4e9e2 869 Gene3D G3DSA:3.40.50.300 1 157 3.5E-6 T 13-10-2018 RAM_19880 74de16c337139a42610843d285e4e9e2 869 SUPERFAMILY SSF46894 788 861 3.37E-19 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_15990 d4eea96eda3fecd3730283e7b4afd941 231 Gene3D G3DSA:1.20.120.530 85 225 1.8E-31 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_15990 d4eea96eda3fecd3730283e7b4afd941 231 Pfam PF07729 FCD domain 89 210 1.1E-25 T 13-10-2018 IPR011711 GntR, C-terminal RAM_15990 d4eea96eda3fecd3730283e7b4afd941 231 SMART SM00895 89 211 1.4E-23 T 13-10-2018 IPR011711 GntR, C-terminal RAM_15990 d4eea96eda3fecd3730283e7b4afd941 231 SUPERFAMILY SSF48008 87 217 4.71E-28 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_15990 d4eea96eda3fecd3730283e7b4afd941 231 Pfam PF00392 Bacterial regulatory proteins, gntR family 2 61 1.5E-10 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_15990 d4eea96eda3fecd3730283e7b4afd941 231 SUPERFAMILY SSF46785 2 65 3.11E-11 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_15990 d4eea96eda3fecd3730283e7b4afd941 231 SMART SM00345 3 61 3.0E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_15990 d4eea96eda3fecd3730283e7b4afd941 231 Gene3D G3DSA:1.10.10.10 1 66 2.2E-12 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_19180 a17d90c18bf2da6a576dd2817aefc46b 476 SMART SM00387 364 473 1.8E-30 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_19180 a17d90c18bf2da6a576dd2817aefc46b 476 SUPERFAMILY SSF55874 313 471 3.14E-36 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_19180 a17d90c18bf2da6a576dd2817aefc46b 476 Gene3D G3DSA:1.10.287.130 253 328 3.3E-16 T 13-10-2018 RAM_19180 a17d90c18bf2da6a576dd2817aefc46b 476 Pfam PF00672 HAMP domain 198 245 4.9E-13 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_19180 a17d90c18bf2da6a576dd2817aefc46b 476 Gene3D G3DSA:3.30.565.10 329 475 4.6E-31 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_19180 a17d90c18bf2da6a576dd2817aefc46b 476 SMART SM00388 257 324 1.1E-15 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_19180 a17d90c18bf2da6a576dd2817aefc46b 476 Pfam PF00512 His Kinase A (phospho-acceptor) domain 259 324 9.3E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_19180 a17d90c18bf2da6a576dd2817aefc46b 476 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 365 471 1.4E-19 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_19180 a17d90c18bf2da6a576dd2817aefc46b 476 SMART SM00304 197 249 1.4E-14 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_19180 a17d90c18bf2da6a576dd2817aefc46b 476 SUPERFAMILY SSF47384 242 324 6.28E-15 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RAM_19180 a17d90c18bf2da6a576dd2817aefc46b 476 Gene3D G3DSA:1.20.1480.50 159 252 8.0E-14 T 13-10-2018 RAM_19180 a17d90c18bf2da6a576dd2817aefc46b 476 SUPERFAMILY SSF158472 198 246 4.84E-9 T 13-10-2018 RAM_19180 a17d90c18bf2da6a576dd2817aefc46b 476 PRINTS PR00344 Bacterial sensor protein C-terminal signature 417 427 1.9E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_19180 a17d90c18bf2da6a576dd2817aefc46b 476 PRINTS PR00344 Bacterial sensor protein C-terminal signature 399 413 1.9E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_19180 a17d90c18bf2da6a576dd2817aefc46b 476 PRINTS PR00344 Bacterial sensor protein C-terminal signature 433 451 1.9E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_19180 a17d90c18bf2da6a576dd2817aefc46b 476 PRINTS PR00344 Bacterial sensor protein C-terminal signature 457 470 1.9E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_10250 c113d54949ed6ac58eeb9f4f88b306d4 206 Gene3D G3DSA:3.90.226.10 1 206 3.3E-53 T 13-10-2018 RAM_10250 c113d54949ed6ac58eeb9f4f88b306d4 206 SUPERFAMILY SSF52096 6 203 3.66E-41 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_10250 c113d54949ed6ac58eeb9f4f88b306d4 206 Pfam PF00378 Enoyl-CoA hydratase/isomerase 32 200 2.9E-27 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RAM_26720 fdeb3cac194e2ab85098f7be4176151c 747 Gene3D G3DSA:3.30.365.10 11 268 8.4E-99 T 13-10-2018 RAM_26720 fdeb3cac194e2ab85098f7be4176151c 747 Gene3D G3DSA:3.30.365.10 120 343 8.4E-99 T 13-10-2018 RAM_26720 fdeb3cac194e2ab85098f7be4176151c 747 SMART SM01008 11 119 1.1E-37 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RAM_26720 fdeb3cac194e2ab85098f7be4176151c 747 Gene3D G3DSA:3.30.365.10 440 591 1.1E-120 T 13-10-2018 RAM_26720 fdeb3cac194e2ab85098f7be4176151c 747 SUPERFAMILY SSF56003 111 741 5.89E-175 T 13-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 RAM_26720 fdeb3cac194e2ab85098f7be4176151c 747 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 138 676 2.9E-159 T 13-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RAM_26720 fdeb3cac194e2ab85098f7be4176151c 747 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 13 118 3.9E-24 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RAM_26720 fdeb3cac194e2ab85098f7be4176151c 747 Gene3D G3DSA:3.90.1170.50 29 119 8.4E-99 T 13-10-2018 RAM_26720 fdeb3cac194e2ab85098f7be4176151c 747 SUPERFAMILY SSF54665 2 141 1.7E-36 T 13-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily RAM_26720 fdeb3cac194e2ab85098f7be4176151c 747 Gene3D G3DSA:3.30.365.10 351 716 1.1E-120 T 13-10-2018 RAM_23955 21c9f8b3f021e65957c2642e96c01efc 308 Pfam PF00005 ABC transporter 20 163 1.2E-23 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_23955 21c9f8b3f021e65957c2642e96c01efc 308 TIGRFAM TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein 12 305 2.2E-101 T 13-10-2018 IPR005894 Daunorubicin resistance ABC transporter ATP-binding subunit DrrA GO:0005524|GO:0043215|GO:1900753 RAM_23955 21c9f8b3f021e65957c2642e96c01efc 308 Gene3D G3DSA:3.40.50.300 1 236 1.6E-63 T 13-10-2018 RAM_23955 21c9f8b3f021e65957c2642e96c01efc 308 SMART SM00382 29 212 8.3E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_23955 21c9f8b3f021e65957c2642e96c01efc 308 SUPERFAMILY SSF52540 4 226 1.49E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_23955 21c9f8b3f021e65957c2642e96c01efc 308 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_21620 8d79c44bbae521854e6f8a10f453ff8c 153 Pfam PF14279 HNH endonuclease 81 136 9.8E-8 T 13-10-2018 IPR029471 HNH endonuclease 5 RAM_21620 8d79c44bbae521854e6f8a10f453ff8c 153 SMART SM00507 68 118 1.8E-8 T 13-10-2018 IPR003615 HNH nuclease RAM_21620 8d79c44bbae521854e6f8a10f453ff8c 153 Gene3D G3DSA:3.30.40.60 54 150 8.7E-16 T 13-10-2018 RAM_42515 d3f0d6369c24cbc057a226ead7ad8106 724 Gene3D G3DSA:3.20.20.450 480 723 1.2E-47 T 13-10-2018 IPR035919 EAL domain superfamily RAM_42515 d3f0d6369c24cbc057a226ead7ad8106 724 Pfam PF00563 EAL domain 486 709 3.6E-35 T 13-10-2018 IPR001633 EAL domain RAM_42515 d3f0d6369c24cbc057a226ead7ad8106 724 SMART SM00267 292 464 9.4E-40 T 13-10-2018 IPR000160 GGDEF domain RAM_42515 d3f0d6369c24cbc057a226ead7ad8106 724 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 173 297 8.7E-19 T 13-10-2018 IPR000014 PAS domain RAM_42515 d3f0d6369c24cbc057a226ead7ad8106 724 Gene3D G3DSA:3.30.70.270 297 478 4.1E-40 T 13-10-2018 RAM_42515 d3f0d6369c24cbc057a226ead7ad8106 724 SUPERFAMILY SSF55073 308 466 3.14E-34 T 13-10-2018 IPR029787 Nucleotide cyclase RAM_42515 d3f0d6369c24cbc057a226ead7ad8106 724 SMART SM00091 177 243 1.5E-10 T 13-10-2018 IPR000014 PAS domain RAM_42515 d3f0d6369c24cbc057a226ead7ad8106 724 SUPERFAMILY SSF141868 484 719 1.83E-38 T 13-10-2018 IPR035919 EAL domain superfamily RAM_42515 d3f0d6369c24cbc057a226ead7ad8106 724 Gene3D G3DSA:3.30.450.20 165 290 2.9E-22 T 13-10-2018 RAM_42515 d3f0d6369c24cbc057a226ead7ad8106 724 Pfam PF00989 PAS fold 178 288 2.9E-16 T 13-10-2018 IPR013767 PAS fold GO:0006355 RAM_42515 d3f0d6369c24cbc057a226ead7ad8106 724 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 299 463 8.5E-25 T 13-10-2018 IPR000160 GGDEF domain RAM_42515 d3f0d6369c24cbc057a226ead7ad8106 724 SMART SM00052 474 716 2.0E-10 T 13-10-2018 IPR001633 EAL domain RAM_42515 d3f0d6369c24cbc057a226ead7ad8106 724 Pfam PF00990 Diguanylate cyclase, GGDEF domain 303 459 4.6E-33 T 13-10-2018 IPR000160 GGDEF domain RAM_42515 d3f0d6369c24cbc057a226ead7ad8106 724 SUPERFAMILY SSF55785 166 288 6.0E-23 T 13-10-2018 IPR035965 PAS domain superfamily RAM_10065 0fc4174bf1f912f2167e048264d2f87b 265 Gene3D G3DSA:3.40.50.1980 104 265 1.0E-47 T 13-10-2018 RAM_10065 0fc4174bf1f912f2167e048264d2f87b 265 Pfam PF01497 Periplasmic binding protein 17 236 4.0E-22 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain RAM_10065 0fc4174bf1f912f2167e048264d2f87b 265 SUPERFAMILY SSF53807 1 260 7.06E-57 T 13-10-2018 RAM_10065 0fc4174bf1f912f2167e048264d2f87b 265 Gene3D G3DSA:3.40.50.1980 1 98 8.3E-27 T 13-10-2018 RAM_24075 56d40749a49aadc31bed959c90baa3fc 249 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 1.9E-6 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RAM_24075 56d40749a49aadc31bed959c90baa3fc 249 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 1.9E-6 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RAM_24075 56d40749a49aadc31bed959c90baa3fc 249 SUPERFAMILY SSF46785 1 55 2.23E-8 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_24075 56d40749a49aadc31bed959c90baa3fc 249 SUPERFAMILY SSF100950 76 231 7.12E-26 T 13-10-2018 IPR037171 NagB/RpiA transferase-like RAM_24075 56d40749a49aadc31bed959c90baa3fc 249 Pfam PF00455 DeoR C terminal sensor domain 76 230 1.9E-43 T 13-10-2018 IPR014036 DeoR C-terminal sensor domain RAM_24075 56d40749a49aadc31bed959c90baa3fc 249 Pfam PF08220 DeoR-like helix-turn-helix domain 6 57 4.0E-12 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RAM_24075 56d40749a49aadc31bed959c90baa3fc 249 SMART SM00420 6 58 6.5E-9 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RAM_24075 56d40749a49aadc31bed959c90baa3fc 249 SMART SM01134 71 232 1.9E-58 T 13-10-2018 RAM_03045 e8e2a78abbae1ae319575c0df80ce941 144 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 8 144 30.924 T 13-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 RAM_03045 e8e2a78abbae1ae319575c0df80ce941 144 SUPERFAMILY SSF46906 70 143 1.19E-26 T 13-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily RAM_03045 e8e2a78abbae1ae319575c0df80ce941 144 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 39 71 2.0E-12 T 13-10-2018 RAM_03045 e8e2a78abbae1ae319575c0df80ce941 144 SUPERFAMILY SSF54747 5 75 1.02E-28 T 13-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily RAM_03045 e8e2a78abbae1ae319575c0df80ce941 144 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 6 144 1.0E-62 T 13-10-2018 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_03045 e8e2a78abbae1ae319575c0df80ce941 144 Gene3D G3DSA:1.10.10.250 76 142 2.5E-30 T 13-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily RAM_03045 e8e2a78abbae1ae319575c0df80ce941 144 ProSitePatterns PS00359 Ribosomal protein L11 signature. 129 144 - T 13-10-2018 IPR020785 Ribosomal protein L11, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_03045 e8e2a78abbae1ae319575c0df80ce941 144 Pfam PF03946 Ribosomal protein L11, N-terminal domain 12 69 1.9E-28 T 13-10-2018 IPR020784 Ribosomal protein L11, N-terminal RAM_03045 e8e2a78abbae1ae319575c0df80ce941 144 SMART SM00649 12 143 1.4E-83 T 13-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 RAM_03045 e8e2a78abbae1ae319575c0df80ce941 144 Gene3D G3DSA:3.30.1550.10 5 75 6.4E-33 T 13-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily RAM_03045 e8e2a78abbae1ae319575c0df80ce941 144 Pfam PF00298 Ribosomal protein L11, RNA binding domain 74 142 4.4E-27 T 13-10-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 RAM_28550 988522b46413bb091362f47f5e8d26f8 172 Gene3D G3DSA:3.20.20.140 1 119 6.7E-32 T 13-10-2018 RAM_28550 988522b46413bb091362f47f5e8d26f8 172 SUPERFAMILY SSF51556 2 167 1.05E-33 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_28550 988522b46413bb091362f47f5e8d26f8 172 Gene3D G3DSA:3.20.20.140 120 165 6.9E-6 T 13-10-2018 RAM_28550 988522b46413bb091362f47f5e8d26f8 172 Pfam PF04909 Amidohydrolase 2 118 2.0E-15 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RAM_36100 cd61db1415dc067f2cea7c6a8478b265 1523 SUPERFAMILY SSF56235 33 451 4.18E-153 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RAM_36100 cd61db1415dc067f2cea7c6a8478b265 1523 Pfam PF01645 Conserved region in glutamate synthase 827 1192 3.4E-154 T 13-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 RAM_36100 cd61db1415dc067f2cea7c6a8478b265 1523 Pfam PF01493 GXGXG motif 1272 1454 8.2E-81 T 13-10-2018 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0016491|GO:0055114 RAM_36100 cd61db1415dc067f2cea7c6a8478b265 1523 SUPERFAMILY SSF69336 1241 1501 6.41E-93 T 13-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 RAM_36100 cd61db1415dc067f2cea7c6a8478b265 1523 Gene3D G3DSA:3.60.20.10 33 457 7.3E-182 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RAM_36100 cd61db1415dc067f2cea7c6a8478b265 1523 Gene3D G3DSA:3.20.20.70 813 1242 3.1E-191 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_36100 cd61db1415dc067f2cea7c6a8478b265 1523 Pfam PF00310 Glutamine amidotransferases class-II 33 449 1.3E-181 T 13-10-2018 IPR017932 Glutamine amidotransferase type 2 domain RAM_36100 cd61db1415dc067f2cea7c6a8478b265 1523 Gene3D G3DSA:2.160.20.60 1244 1512 4.1E-106 T 13-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 RAM_36100 cd61db1415dc067f2cea7c6a8478b265 1523 SUPERFAMILY SSF51395 470 1228 8.14E-260 T 13-10-2018 RAM_36100 cd61db1415dc067f2cea7c6a8478b265 1523 Pfam PF04898 Glutamate synthase central domain 475 762 5.6E-110 T 13-10-2018 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 RAM_36100 cd61db1415dc067f2cea7c6a8478b265 1523 Gene3D G3DSA:3.20.20.70 458 812 3.2E-133 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_02590 22af3b0584a30b5cdd1012e7fce9df67 360 Gene3D G3DSA:3.40.50.1100 37 325 3.4E-67 T 13-10-2018 RAM_02590 22af3b0584a30b5cdd1012e7fce9df67 360 Gene3D G3DSA:3.40.50.1100 53 159 3.4E-67 T 13-10-2018 RAM_02590 22af3b0584a30b5cdd1012e7fce9df67 360 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 34 318 4.6E-49 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RAM_02590 22af3b0584a30b5cdd1012e7fce9df67 360 SUPERFAMILY SSF53686 26 338 9.82E-70 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RAM_46880 6119cd5e3dc73658ae380a9252e768a9 288 Pfam PF13377 Periplasmic binding protein-like domain 125 286 1.1E-33 T 13-10-2018 RAM_46880 6119cd5e3dc73658ae380a9252e768a9 288 SUPERFAMILY SSF53822 19 287 1.81E-58 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_46880 6119cd5e3dc73658ae380a9252e768a9 288 Gene3D G3DSA:3.40.50.2300 117 246 2.5E-64 T 13-10-2018 RAM_46880 6119cd5e3dc73658ae380a9252e768a9 288 Gene3D G3DSA:3.40.50.2300 19 263 2.5E-64 T 13-10-2018 RAM_02915 498a209dc3f28991f33d0ead47d2d535 403 Pfam PF13489 Methyltransferase domain 55 212 1.1E-12 T 13-10-2018 RAM_02915 498a209dc3f28991f33d0ead47d2d535 403 SUPERFAMILY SSF53335 31 222 2.16E-20 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_02915 498a209dc3f28991f33d0ead47d2d535 403 Gene3D G3DSA:3.40.50.720 302 403 1.7E-39 T 13-10-2018 RAM_02915 498a209dc3f28991f33d0ead47d2d535 403 Pfam PF08484 C-methyltransferase C-terminal domain 217 395 9.3E-60 T 13-10-2018 IPR013691 C-methyltransferase RAM_02915 498a209dc3f28991f33d0ead47d2d535 403 Pfam PF08421 Putative zinc binding domain 2 38 9.2E-9 T 13-10-2018 IPR013630 Methyltransferase putative zinc binding domain RAM_02915 498a209dc3f28991f33d0ead47d2d535 403 Gene3D G3DSA:3.40.50.150 35 228 2.6E-38 T 13-10-2018 RAM_18095 1c86456cfad7dece837e651b552fc817 294 Gene3D G3DSA:3.30.450.180 110 285 4.8E-15 T 13-10-2018 RAM_18095 1c86456cfad7dece837e651b552fc817 294 Gene3D G3DSA:1.10.260.40 28 96 3.7E-7 T 13-10-2018 RAM_18095 1c86456cfad7dece837e651b552fc817 294 SMART SM00530 7 84 1.8E-4 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_18095 1c86456cfad7dece837e651b552fc817 294 SUPERFAMILY SSF47413 33 81 4.57E-6 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_18095 1c86456cfad7dece837e651b552fc817 294 Pfam PF13560 Helix-turn-helix domain 15 87 3.0E-11 T 13-10-2018 RAM_26970 e83bfd69f66ea9cda844d6822ab49ae4 784 SMART SM00471 100 210 1.5E-12 T 13-10-2018 IPR003607 HD/PDEase domain RAM_26970 e83bfd69f66ea9cda844d6822ab49ae4 784 Pfam PF04607 Region found in RelA / SpoT proteins 292 401 8.2E-36 T 13-10-2018 IPR007685 RelA/SpoT GO:0015969 RAM_26970 e83bfd69f66ea9cda844d6822ab49ae4 784 Pfam PF02824 TGS domain 447 506 1.6E-22 T 13-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 RAM_26970 e83bfd69f66ea9cda844d6822ab49ae4 784 Gene3D G3DSA:1.10.3210.10 59 248 4.2E-78 T 13-10-2018 RAM_26970 e83bfd69f66ea9cda844d6822ab49ae4 784 Pfam PF13291 ACT domain 703 779 5.0E-16 T 13-10-2018 IPR002912 ACT domain RAM_26970 e83bfd69f66ea9cda844d6822ab49ae4 784 SUPERFAMILY SSF81301 237 451 3.27E-60 T 13-10-2018 RAM_26970 e83bfd69f66ea9cda844d6822ab49ae4 784 SUPERFAMILY SSF55021 703 781 1.58E-13 T 13-10-2018 RAM_26970 e83bfd69f66ea9cda844d6822ab49ae4 784 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 85 779 1.4E-263 T 13-10-2018 IPR004811 RelA/SpoT family GO:0015969 RAM_26970 e83bfd69f66ea9cda844d6822ab49ae4 784 Pfam PF13328 HD domain 85 232 2.3E-49 T 13-10-2018 IPR003607 HD/PDEase domain RAM_26970 e83bfd69f66ea9cda844d6822ab49ae4 784 Gene3D G3DSA:3.30.460.10 250 382 4.1E-45 T 13-10-2018 RAM_26970 e83bfd69f66ea9cda844d6822ab49ae4 784 SMART SM00954 292 402 1.6E-60 T 13-10-2018 IPR007685 RelA/SpoT GO:0015969 RAM_26970 e83bfd69f66ea9cda844d6822ab49ae4 784 Gene3D G3DSA:3.30.70.260 703 783 1.1E-15 T 13-10-2018 RAM_26970 e83bfd69f66ea9cda844d6822ab49ae4 784 Gene3D G3DSA:3.10.20.30 440 513 2.2E-31 T 13-10-2018 IPR012675 Beta-grasp domain superfamily RAM_26970 e83bfd69f66ea9cda844d6822ab49ae4 784 SUPERFAMILY SSF81271 434 506 4.14E-21 T 13-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 RAM_26970 e83bfd69f66ea9cda844d6822ab49ae4 784 SUPERFAMILY SSF109604 61 247 6.59E-71 T 13-10-2018 RAM_40020 67ac2a07691e3587942fc7db48ce2c29 76 Pfam PF01197 Ribosomal protein L31 1 66 5.7E-32 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_40020 67ac2a07691e3587942fc7db48ce2c29 76 ProSitePatterns PS01143 Ribosomal protein L31 signature. 36 57 - T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_40020 67ac2a07691e3587942fc7db48ce2c29 76 SUPERFAMILY SSF143800 1 67 2.24E-25 T 13-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_40020 67ac2a07691e3587942fc7db48ce2c29 76 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 1 69 30.741 T 13-10-2018 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_40020 67ac2a07691e3587942fc7db48ce2c29 76 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 67 3.9E-33 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_40020 67ac2a07691e3587942fc7db48ce2c29 76 PRINTS PR01249 Ribosomal protein L31 signature 47 65 2.8E-20 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_40020 67ac2a07691e3587942fc7db48ce2c29 76 PRINTS PR01249 Ribosomal protein L31 signature 32 47 2.8E-20 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_40020 67ac2a07691e3587942fc7db48ce2c29 76 PRINTS PR01249 Ribosomal protein L31 signature 2 19 2.8E-20 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_40020 67ac2a07691e3587942fc7db48ce2c29 76 Gene3D G3DSA:2.30.170.50 1 71 1.2E-31 T 13-10-2018 RAM_22060 e04d847330300a0d3ac7f0612ab94717 1178 Gene3D G3DSA:1.25.40.10 608 745 3.6E-11 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_22060 e04d847330300a0d3ac7f0612ab94717 1178 SMART SM00530 11 66 4.3E-8 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_22060 e04d847330300a0d3ac7f0612ab94717 1178 Pfam PF00534 Glycosyl transferases group 1 969 1098 2.5E-13 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 RAM_22060 e04d847330300a0d3ac7f0612ab94717 1178 Gene3D G3DSA:3.40.50.300 81 241 5.0E-25 T 13-10-2018 RAM_22060 e04d847330300a0d3ac7f0612ab94717 1178 PRINTS PR00364 Disease resistance protein signature 286 300 5.1E-7 T 13-10-2018 RAM_22060 e04d847330300a0d3ac7f0612ab94717 1178 PRINTS PR00364 Disease resistance protein signature 119 134 5.1E-7 T 13-10-2018 RAM_22060 e04d847330300a0d3ac7f0612ab94717 1178 PRINTS PR00364 Disease resistance protein signature 198 212 5.1E-7 T 13-10-2018 RAM_22060 e04d847330300a0d3ac7f0612ab94717 1178 Pfam PF00931 NB-ARC domain 98 327 4.5E-15 T 13-10-2018 IPR002182 NB-ARC GO:0043531 Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-6798695|Reactome: R-HSA-6803207|Reactome: R-HSA-8953750 RAM_22060 e04d847330300a0d3ac7f0612ab94717 1178 Pfam PF13560 Helix-turn-helix domain 8 65 6.3E-11 T 13-10-2018 RAM_22060 e04d847330300a0d3ac7f0612ab94717 1178 Gene3D G3DSA:3.40.50.2000 949 1153 3.5E-25 T 13-10-2018 RAM_22060 e04d847330300a0d3ac7f0612ab94717 1178 SUPERFAMILY SSF53756 783 1173 7.33E-35 T 13-10-2018 RAM_22060 e04d847330300a0d3ac7f0612ab94717 1178 SUPERFAMILY SSF47413 6 61 1.41E-8 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_22060 e04d847330300a0d3ac7f0612ab94717 1178 Gene3D G3DSA:1.25.40.10 483 607 6.9E-9 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_22060 e04d847330300a0d3ac7f0612ab94717 1178 Gene3D G3DSA:1.10.260.40 6 69 1.1E-8 T 13-10-2018 RAM_22060 e04d847330300a0d3ac7f0612ab94717 1178 SMART SM00382 116 270 7.3E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_22060 e04d847330300a0d3ac7f0612ab94717 1178 Gene3D G3DSA:3.40.50.2000 784 1167 3.5E-25 T 13-10-2018 RAM_22060 e04d847330300a0d3ac7f0612ab94717 1178 SUPERFAMILY SSF48452 507 698 4.74E-18 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_22060 e04d847330300a0d3ac7f0612ab94717 1178 SUPERFAMILY SSF52540 79 349 3.0E-27 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_42880 10f9e0e92c12f11128734e9b84728a92 355 Pfam PF00534 Glycosyl transferases group 1 175 329 1.3E-23 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 RAM_42880 10f9e0e92c12f11128734e9b84728a92 355 Gene3D G3DSA:3.40.50.2000 114 347 5.3E-41 T 13-10-2018 RAM_42880 10f9e0e92c12f11128734e9b84728a92 355 SUPERFAMILY SSF53756 17 350 6.73E-53 T 13-10-2018 RAM_42880 10f9e0e92c12f11128734e9b84728a92 355 Gene3D G3DSA:3.40.50.2000 160 331 5.3E-41 T 13-10-2018 RAM_40815 3adc67c1e9dafaf0417e0f634838bbe2 78 SMART SM00387 1 76 2.3E-9 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_40815 3adc67c1e9dafaf0417e0f634838bbe2 78 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 8 74 1.9E-15 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_40815 3adc67c1e9dafaf0417e0f634838bbe2 78 Gene3D G3DSA:3.30.565.10 1 75 1.3E-21 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_40815 3adc67c1e9dafaf0417e0f634838bbe2 78 SUPERFAMILY SSF55874 3 74 1.96E-22 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_40815 3adc67c1e9dafaf0417e0f634838bbe2 78 PRINTS PR00344 Bacterial sensor protein C-terminal signature 40 58 5.1E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_40815 3adc67c1e9dafaf0417e0f634838bbe2 78 PRINTS PR00344 Bacterial sensor protein C-terminal signature 23 33 5.1E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_40815 3adc67c1e9dafaf0417e0f634838bbe2 78 PRINTS PR00344 Bacterial sensor protein C-terminal signature 5 19 5.1E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_01405 12b758d49446de042628c72a7a9323d9 448 Pfam PF00704 Glycosyl hydrolases family 18 170 367 5.0E-10 T 13-10-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 RAM_01405 12b758d49446de042628c72a7a9323d9 448 SUPERFAMILY SSF51445 167 422 5.22E-19 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_01405 12b758d49446de042628c72a7a9323d9 448 SMART SM00637 33 132 4.9E-37 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_01405 12b758d49446de042628c72a7a9323d9 448 Pfam PF00553 Cellulose binding domain 34 132 1.3E-25 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_01405 12b758d49446de042628c72a7a9323d9 448 Gene3D G3DSA:3.20.20.80 161 448 9.4E-80 T 13-10-2018 RAM_01405 12b758d49446de042628c72a7a9323d9 448 SUPERFAMILY SSF49384 29 133 1.12E-27 T 13-10-2018 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily GO:0030246 RAM_01405 12b758d49446de042628c72a7a9323d9 448 Gene3D G3DSA:2.60.40.290 27 135 1.5E-31 T 13-10-2018 IPR012291 CBM2, carbohydrate-binding domain superfamily GO:0004553|GO:0030247 RAM_01405 12b758d49446de042628c72a7a9323d9 448 ProSitePatterns PS00561 CBM2a (carbohydrate-binding type-2) domain signature. 97 110 - T 13-10-2018 IPR018366 Carbohydrate-binding type-2, conserved site GO:0004553|GO:0005975|GO:0030246 RAM_11980 a011fbe426697abd96d9d6e8332d65d0 61 Pfam PF04149 Domain of unknown function (DUF397) 7 61 1.5E-17 T 13-10-2018 IPR007278 Domain of unknown function DUF397 RAM_25820 46826d6aa8bd36ecdc5a42041c8bfc73 346 Pfam PF01261 Xylose isomerase-like TIM barrel 70 237 1.7E-18 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain RAM_25820 46826d6aa8bd36ecdc5a42041c8bfc73 346 Gene3D G3DSA:3.20.20.150 35 320 5.0E-46 T 13-10-2018 RAM_25820 46826d6aa8bd36ecdc5a42041c8bfc73 346 SUPERFAMILY SSF51658 60 310 3.59E-31 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily RAM_16300 9076c81ad4758ca987b3451a8766714a 502 SUPERFAMILY SSF103473 18 478 1.57E-67 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_16300 9076c81ad4758ca987b3451a8766714a 502 Pfam PF00083 Sugar (and other) transporter 62 479 5.2E-48 T 13-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 RAM_16300 9076c81ad4758ca987b3451a8766714a 502 Gene3D G3DSA:1.20.1250.20 26 481 2.5E-75 T 13-10-2018 RAM_08325 ef3b2aa59e3183eb3411e4c8a19408b3 535 PIRSF PIRSF001363 2 532 3.8E-238 T 13-10-2018 IPR006252 Malate synthase A GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 RAM_08325 ef3b2aa59e3183eb3411e4c8a19408b3 535 TIGRFAM TIGR01344 malate_syn_A: malate synthase A 22 528 1.2E-235 T 13-10-2018 IPR006252 Malate synthase A GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 RAM_08325 ef3b2aa59e3183eb3411e4c8a19408b3 535 SUPERFAMILY SSF51645 6 530 7.85E-183 T 13-10-2018 IPR011076 Malate synthase-like superfamily GO:0003824 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 RAM_08325 ef3b2aa59e3183eb3411e4c8a19408b3 535 Pfam PF01274 Malate synthase 11 528 6.1E-195 T 13-10-2018 IPR001465 Malate synthase GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 RAM_08325 ef3b2aa59e3183eb3411e4c8a19408b3 535 Gene3D G3DSA:3.20.20.360 3 411 3.2E-189 T 13-10-2018 RAM_08325 ef3b2aa59e3183eb3411e4c8a19408b3 535 ProSitePatterns PS00510 Malate synthase signature. 266 281 - T 13-10-2018 IPR019830 Malate synthase, conserved site GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 RAM_08325 ef3b2aa59e3183eb3411e4c8a19408b3 535 Gene3D G3DSA:1.20.1220.12 414 530 6.8E-41 T 13-10-2018 RAM_18865 99563540be09d1239d8524a25762387c 259 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 19 248 4.6E-55 T 13-10-2018 RAM_18865 99563540be09d1239d8524a25762387c 259 SUPERFAMILY SSF51735 1 250 1.77E-69 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_18865 99563540be09d1239d8524a25762387c 259 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_18865 99563540be09d1239d8524a25762387c 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 2.6E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18865 99563540be09d1239d8524a25762387c 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 2.6E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18865 99563540be09d1239d8524a25762387c 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 2.6E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18865 99563540be09d1239d8524a25762387c 259 Gene3D G3DSA:3.40.50.720 2 254 9.1E-76 T 13-10-2018 RAM_18865 99563540be09d1239d8524a25762387c 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 1.1E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18865 99563540be09d1239d8524a25762387c 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 1.1E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18865 99563540be09d1239d8524a25762387c 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 1.1E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18865 99563540be09d1239d8524a25762387c 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 1.1E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18865 99563540be09d1239d8524a25762387c 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.1E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18865 99563540be09d1239d8524a25762387c 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 1.1E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_45990 840f9755bb72aed425ce0e02de56b59f 125 SUPERFAMILY SSF54593 12 123 3.49E-23 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_45990 840f9755bb72aed425ce0e02de56b59f 125 Gene3D G3DSA:3.10.180.10 2 122 2.4E-24 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_45990 840f9755bb72aed425ce0e02de56b59f 125 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 10 117 2.0E-6 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RAM_24840 c1f76475145f421938ccac9fc9fca895 293 Gene3D G3DSA:2.60.200.40 131 286 1.1E-39 T 13-10-2018 RAM_24840 c1f76475145f421938ccac9fc9fca895 293 SMART SM00046 4 130 0.0033 T 13-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 RAM_24840 c1f76475145f421938ccac9fc9fca895 293 SUPERFAMILY SSF111331 6 292 4.36E-64 T 13-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily RAM_24840 c1f76475145f421938ccac9fc9fca895 293 TIGRFAM TIGR00147 TIGR00147: lipid kinase, YegS/Rv2252/BmrU family 4 291 2.6E-35 T 13-10-2018 IPR005218 Diacylglycerol/lipid kinase RAM_24840 c1f76475145f421938ccac9fc9fca895 293 Pfam PF00781 Diacylglycerol kinase catalytic domain 5 129 7.3E-22 T 13-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 RAM_24840 c1f76475145f421938ccac9fc9fca895 293 Gene3D G3DSA:3.40.50.10330 3 130 7.2E-24 T 13-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 RAM_06060 279b00994cc8553dc454cefeb97ecf6e 258 Gene3D G3DSA:3.40.50.1980 16 133 2.2E-19 T 13-10-2018 RAM_06060 279b00994cc8553dc454cefeb97ecf6e 258 Gene3D G3DSA:3.40.50.1980 140 255 2.2E-10 T 13-10-2018 RAM_06060 279b00994cc8553dc454cefeb97ecf6e 258 SUPERFAMILY SSF53807 17 253 5.1E-30 T 13-10-2018 RAM_25245 df4bc6ef8c3e0b3d62d1a9b2408bb8f5 534 Pfam PF08386 TAP-like protein 424 522 8.3E-17 T 13-10-2018 IPR013595 Peptidase S33 tripeptidyl aminopeptidase-like, C-terminal RAM_25245 df4bc6ef8c3e0b3d62d1a9b2408bb8f5 534 Pfam PF00561 alpha/beta hydrolase fold 100 262 1.2E-23 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_25245 df4bc6ef8c3e0b3d62d1a9b2408bb8f5 534 SUPERFAMILY SSF53474 99 500 7.03E-22 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_33015 d0197f4e5e20d0eb490e4ab1dbd25d46 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 1.8E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_33015 d0197f4e5e20d0eb490e4ab1dbd25d46 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 1.8E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_33015 d0197f4e5e20d0eb490e4ab1dbd25d46 192 Gene3D G3DSA:1.10.357.10 2 191 1.4E-50 T 13-10-2018 RAM_33015 d0197f4e5e20d0eb490e4ab1dbd25d46 192 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 64 1.6E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_33015 d0197f4e5e20d0eb490e4ab1dbd25d46 192 SUPERFAMILY SSF46689 6 82 2.44E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_33015 d0197f4e5e20d0eb490e4ab1dbd25d46 192 SUPERFAMILY SSF48498 85 186 6.99E-10 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_27055 e43525d3416a31070fd31179ecbc2ed4 755 ProSitePatterns PS00455 Putative AMP-binding domain signature. 394 405 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_27055 e43525d3416a31070fd31179ecbc2ed4 755 Pfam PF00501 AMP-binding enzyme 257 648 1.4E-75 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_27055 e43525d3416a31070fd31179ecbc2ed4 755 Gene3D G3DSA:3.40.50.12780 243 641 3.2E-113 T 13-10-2018 RAM_27055 e43525d3416a31070fd31179ecbc2ed4 755 Gene3D G3DSA:3.30.559.30 9 219 2.3E-27 T 13-10-2018 RAM_27055 e43525d3416a31070fd31179ecbc2ed4 755 Gene3D G3DSA:3.30.300.30 642 744 4.8E-30 T 13-10-2018 RAM_27055 e43525d3416a31070fd31179ecbc2ed4 755 SUPERFAMILY SSF56801 223 743 6.41E-126 T 13-10-2018 RAM_27055 e43525d3416a31070fd31179ecbc2ed4 755 Pfam PF13193 AMP-binding enzyme C-terminal domain 659 731 1.7E-8 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_27055 e43525d3416a31070fd31179ecbc2ed4 755 SUPERFAMILY SSF52777 10 216 3.56E-23 T 13-10-2018 RAM_27055 e43525d3416a31070fd31179ecbc2ed4 755 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 278 672 1.3E-105 T 13-10-2018 IPR010071 Amino acid adenylation domain RAM_18370 2d295de7dfe642698b21a673bf8110c5 250 SMART SM00422 1 69 6.0E-29 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_18370 2d295de7dfe642698b21a673bf8110c5 250 SUPERFAMILY SSF46955 1 101 3.04E-24 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily RAM_18370 2d295de7dfe642698b21a673bf8110c5 250 Pfam PF13411 MerR HTH family regulatory protein 2 66 1.5E-17 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_18370 2d295de7dfe642698b21a673bf8110c5 250 Gene3D G3DSA:1.10.1660.10 1 122 1.5E-28 T 13-10-2018 RAM_18370 2d295de7dfe642698b21a673bf8110c5 250 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 36 56 2.7E-10 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_18370 2d295de7dfe642698b21a673bf8110c5 250 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 2.7E-10 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_18370 2d295de7dfe642698b21a673bf8110c5 250 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 2.7E-10 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_02335 59d568ca22e2a293bcc5c75c4b0bcaae 170 Gene3D G3DSA:3.30.1460.10 4 136 2.1E-5 T 13-10-2018 RAM_02335 59d568ca22e2a293bcc5c75c4b0bcaae 170 SUPERFAMILY SSF69635 4 128 1.0E-29 T 13-10-2018 RAM_02335 59d568ca22e2a293bcc5c75c4b0bcaae 170 Pfam PF10722 Putative bacterial sensory transduction regulator 4 126 1.4E-21 T 13-10-2018 IPR019660 Putative sensory transduction regulator YbjN RAM_13195 0d87bc44533b16d686ef4f6295032702 602 SUPERFAMILY SSF51011 510 592 2.56E-16 T 13-10-2018 RAM_13195 0d87bc44533b16d686ef4f6295032702 602 Gene3D G3DSA:3.90.400.10 147 216 7.0E-222 T 13-10-2018 RAM_13195 0d87bc44533b16d686ef4f6295032702 602 Gene3D G3DSA:2.60.40.1180 507 601 5.9E-34 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta RAM_13195 0d87bc44533b16d686ef4f6295032702 602 Pfam PF16657 Maltogenic Amylase, C-terminal domain 507 589 1.1E-20 T 13-10-2018 IPR032091 Maltogenic Amylase, C-terminal RAM_13195 0d87bc44533b16d686ef4f6295032702 602 TIGRFAM TIGR02456 treS_nterm: trehalose synthase 48 592 8.8E-285 T 13-10-2018 IPR012810 Trehalose synthase/alpha-amylase, N-terminal GO:0003824|GO:0005975 KEGG: 00500+5.4.99.16|MetaCyc: PWY-2622|MetaCyc: PWY-7900 RAM_13195 0d87bc44533b16d686ef4f6295032702 602 Gene3D G3DSA:3.20.20.80 48 501 7.0E-222 T 13-10-2018 RAM_13195 0d87bc44533b16d686ef4f6295032702 602 SMART SM00642 57 459 1.8E-112 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RAM_13195 0d87bc44533b16d686ef4f6295032702 602 Pfam PF00128 Alpha amylase, catalytic domain 72 428 6.0E-71 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RAM_13195 0d87bc44533b16d686ef4f6295032702 602 SUPERFAMILY SSF51445 47 504 5.37E-129 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_38620 4a8cd57130b3ec965eb4372bf2c03824 275 Gene3D G3DSA:3.50.30.50 27 270 5.7E-57 T 13-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 RAM_38620 4a8cd57130b3ec965eb4372bf2c03824 275 SUPERFAMILY SSF102198 40 265 1.31E-39 T 13-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 RAM_38620 4a8cd57130b3ec965eb4372bf2c03824 275 Pfam PF04199 Putative cyclase 42 211 3.8E-30 T 13-10-2018 IPR007325 Kynurenine formamidase/cyclase-like GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 RAM_06190 111ba0790047378c710dd619b2e383fb 447 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 8 442 3.7E-137 T 13-10-2018 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RAM_06190 111ba0790047378c710dd619b2e383fb 447 Gene3D G3DSA:3.30.590.10 109 445 1.7E-124 T 13-10-2018 RAM_06190 111ba0790047378c710dd619b2e383fb 447 Gene3D G3DSA:3.10.20.70 2 108 6.0E-34 T 13-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RAM_06190 111ba0790047378c710dd619b2e383fb 447 Pfam PF00120 Glutamine synthetase, catalytic domain 107 441 5.7E-129 T 13-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RAM_06190 111ba0790047378c710dd619b2e383fb 447 SMART SM01230 106 357 3.6E-127 T 13-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RAM_06190 111ba0790047378c710dd619b2e383fb 447 SUPERFAMILY SSF55931 108 444 5.49E-119 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 RAM_06190 111ba0790047378c710dd619b2e383fb 447 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 16 100 1.2E-25 T 13-10-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 RAM_06190 111ba0790047378c710dd619b2e383fb 447 SUPERFAMILY SSF54368 8 104 1.31E-28 T 13-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RAM_06190 111ba0790047378c710dd619b2e383fb 447 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 234 249 - T 13-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 RAM_28865 41348d0b190777d34a36bbd4b83705c8 553 TIGRFAM TIGR04141 TIGR04141: sporadically distributed protein, TIGR04141 family 11 535 3.1E-109 T 13-10-2018 IPR026487 Sporadically distributed protein CHP04141 RAM_22890 311343756378371dfcefa9eb0d7a1561 411 SUPERFAMILY SSF48264 8 405 6.16E-82 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_22890 311343756378371dfcefa9eb0d7a1561 411 PRINTS PR00463 E-class P450 group I signature 310 334 1.5E-20 T 13-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_22890 311343756378371dfcefa9eb0d7a1561 411 PRINTS PR00463 E-class P450 group I signature 342 352 1.5E-20 T 13-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_22890 311343756378371dfcefa9eb0d7a1561 411 PRINTS PR00463 E-class P450 group I signature 352 375 1.5E-20 T 13-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_22890 311343756378371dfcefa9eb0d7a1561 411 PRINTS PR00463 E-class P450 group I signature 223 240 1.5E-20 T 13-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_22890 311343756378371dfcefa9eb0d7a1561 411 PRINTS PR00463 E-class P450 group I signature 18 37 1.5E-20 T 13-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_22890 311343756378371dfcefa9eb0d7a1561 411 PRINTS PR00463 E-class P450 group I signature 269 287 1.5E-20 T 13-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_22890 311343756378371dfcefa9eb0d7a1561 411 Gene3D G3DSA:1.10.630.10 3 405 1.5E-89 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_22890 311343756378371dfcefa9eb0d7a1561 411 PRINTS PR00385 P450 superfamily signature 352 363 1.1E-12 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_22890 311343756378371dfcefa9eb0d7a1561 411 PRINTS PR00385 P450 superfamily signature 343 352 1.1E-12 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_22890 311343756378371dfcefa9eb0d7a1561 411 PRINTS PR00385 P450 superfamily signature 270 281 1.1E-12 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_22890 311343756378371dfcefa9eb0d7a1561 411 PRINTS PR00385 P450 superfamily signature 234 251 1.1E-12 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_22890 311343756378371dfcefa9eb0d7a1561 411 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 345 354 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RAM_22890 311343756378371dfcefa9eb0d7a1561 411 Pfam PF00067 Cytochrome P450 12 380 3.8E-53 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_05285 643e960d898fa8de2aacb18cd0fb2cc7 672 Gene3D G3DSA:2.10.10.20 625 667 7.6E-11 T 13-10-2018 RAM_05285 643e960d898fa8de2aacb18cd0fb2cc7 672 Gene3D G3DSA:3.10.170.10 194 335 9.9E-25 T 13-10-2018 RAM_05285 643e960d898fa8de2aacb18cd0fb2cc7 672 Pfam PF01447 Thermolysin metallopeptidase, catalytic domain 196 331 3.3E-27 T 13-10-2018 IPR013856 Peptidase M4 domain GO:0004222 RAM_05285 643e960d898fa8de2aacb18cd0fb2cc7 672 Pfam PF07504 Fungalysin/Thermolysin Propeptide Motif 76 104 6.8E-6 T 13-10-2018 IPR011096 FTP domain RAM_05285 643e960d898fa8de2aacb18cd0fb2cc7 672 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 410 426 1.3E-6 T 13-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 RAM_05285 643e960d898fa8de2aacb18cd0fb2cc7 672 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 289 309 1.3E-6 T 13-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 RAM_05285 643e960d898fa8de2aacb18cd0fb2cc7 672 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 345 356 1.3E-6 T 13-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 RAM_05285 643e960d898fa8de2aacb18cd0fb2cc7 672 Gene3D G3DSA:1.10.390.10 341 498 1.0E-40 T 13-10-2018 IPR027268 Peptidase M4/M1, CTD superfamily RAM_05285 643e960d898fa8de2aacb18cd0fb2cc7 672 Pfam PF03413 Peptidase propeptide and YPEB domain 125 188 8.5E-6 T 13-10-2018 IPR025711 PepSY domain RAM_05285 643e960d898fa8de2aacb18cd0fb2cc7 672 Pfam PF02868 Thermolysin metallopeptidase, alpha-helical domain 342 498 7.3E-35 T 13-10-2018 IPR001570 Peptidase M4, C-terminal GO:0004222 RAM_05285 643e960d898fa8de2aacb18cd0fb2cc7 672 SMART SM00495 624 669 1.7E-4 T 13-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 RAM_05285 643e960d898fa8de2aacb18cd0fb2cc7 672 SUPERFAMILY SSF51055 620 671 5.3E-9 T 13-10-2018 IPR036573 Carbohydrate-binding module superfamily 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 RAM_05285 643e960d898fa8de2aacb18cd0fb2cc7 672 SUPERFAMILY SSF55486 191 498 1.21E-58 T 13-10-2018 RAM_20300 c5014bbc6b11d786e1281689b24c3623 245 Pfam PF12697 Alpha/beta hydrolase family 6 229 1.4E-15 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_20300 c5014bbc6b11d786e1281689b24c3623 245 SUPERFAMILY SSF53474 6 233 1.82E-29 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_20300 c5014bbc6b11d786e1281689b24c3623 245 Gene3D G3DSA:3.40.50.1820 3 236 1.2E-40 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_22590 d474cb3f8cf68c1e1f42f6553522d020 428 SUPERFAMILY SSF51126 31 427 1.38E-69 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor RAM_22590 d474cb3f8cf68c1e1f42f6553522d020 428 Pfam PF00544 Pectate lyase 137 345 5.3E-48 T 13-10-2018 IPR002022 Pectate lyase RAM_22590 d474cb3f8cf68c1e1f42f6553522d020 428 SMART SM00656 115 351 7.0E-47 T 13-10-2018 IPR002022 Pectate lyase RAM_22590 d474cb3f8cf68c1e1f42f6553522d020 428 Gene3D G3DSA:2.160.20.10 27 428 1.1E-145 T 13-10-2018 IPR012334 Pectin lyase fold RAM_07135 81b1bed522bb2aeb1a5f0fe130952d79 297 TIGRFAM TIGR03619 F420_Rv2161c: probable F420-dependent oxidoreductase, Rv2161c family 22 262 7.2E-57 T 13-10-2018 IPR019921 Luciferase-like, F420-dependent oxidoreductase, Rv2161c, predicted RAM_07135 81b1bed522bb2aeb1a5f0fe130952d79 297 Gene3D G3DSA:3.20.20.30 1 286 3.0E-61 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_07135 81b1bed522bb2aeb1a5f0fe130952d79 297 SUPERFAMILY SSF51679 2 293 8.51E-52 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_07135 81b1bed522bb2aeb1a5f0fe130952d79 297 Pfam PF00296 Luciferase-like monooxygenase 14 261 4.0E-43 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_29460 aa3fed189b3276121e834f47e69e4754 278 SUPERFAMILY SSF51735 3 238 2.09E-62 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_29460 aa3fed189b3276121e834f47e69e4754 278 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 76 87 2.0E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_29460 aa3fed189b3276121e834f47e69e4754 278 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 129 137 2.0E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_29460 aa3fed189b3276121e834f47e69e4754 278 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 168 2.0E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_29460 aa3fed189b3276121e834f47e69e4754 278 Pfam PF00106 short chain dehydrogenase 7 190 2.0E-49 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_29460 aa3fed189b3276121e834f47e69e4754 278 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 136 164 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_29460 aa3fed189b3276121e834f47e69e4754 278 Gene3D G3DSA:3.40.50.720 2 278 1.5E-80 T 13-10-2018 RAM_29460 aa3fed189b3276121e834f47e69e4754 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 149 168 9.7E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_29460 aa3fed189b3276121e834f47e69e4754 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 9.7E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_29460 aa3fed189b3276121e834f47e69e4754 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 76 87 9.7E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_29460 aa3fed189b3276121e834f47e69e4754 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 170 187 9.7E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_29460 aa3fed189b3276121e834f47e69e4754 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 123 139 9.7E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_23280 7b4e9b193ae50f4c73d894874a917ee4 409 TIGRFAM TIGR03253 oxalate_frc: formyl-CoA transferase 3 409 4.1E-196 T 13-10-2018 IPR017659 Formyl-CoA:oxalate CoA-transferase GO:0033608 MetaCyc: PWY-6695 RAM_23280 7b4e9b193ae50f4c73d894874a917ee4 409 SUPERFAMILY SSF89796 3 409 2.09E-121 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily RAM_23280 7b4e9b193ae50f4c73d894874a917ee4 409 Pfam PF02515 CoA-transferase family III 5 386 6.5E-103 T 13-10-2018 IPR003673 CoA-transferase family III GO:0003824 RAM_23280 7b4e9b193ae50f4c73d894874a917ee4 409 Hamap MF_00742 Formyl-CoA:oxalate CoA-transferase [frc]. 1 409 62.97 T 13-10-2018 IPR017659 Formyl-CoA:oxalate CoA-transferase GO:0033608 MetaCyc: PWY-6695 RAM_23280 7b4e9b193ae50f4c73d894874a917ee4 409 Gene3D G3DSA:3.40.50.10540 5 402 2.2E-143 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily RAM_23280 7b4e9b193ae50f4c73d894874a917ee4 409 Gene3D G3DSA:3.30.1540.10 244 338 2.2E-143 T 13-10-2018 RAM_36565 05b41e1c8e4fd04a52e3f32c15291b85 354 SMART SM00829 10 349 5.2E-5 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_36565 05b41e1c8e4fd04a52e3f32c15291b85 354 Pfam PF00107 Zinc-binding dehydrogenase 184 311 9.2E-22 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RAM_36565 05b41e1c8e4fd04a52e3f32c15291b85 354 Gene3D G3DSA:3.40.50.720 161 297 3.8E-100 T 13-10-2018 RAM_36565 05b41e1c8e4fd04a52e3f32c15291b85 354 SUPERFAMILY SSF51735 150 313 5.79E-38 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_36565 05b41e1c8e4fd04a52e3f32c15291b85 354 Gene3D G3DSA:3.90.180.10 10 336 3.8E-100 T 13-10-2018 RAM_36565 05b41e1c8e4fd04a52e3f32c15291b85 354 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 27 143 1.3E-29 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_36565 05b41e1c8e4fd04a52e3f32c15291b85 354 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 71 85 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 RAM_36565 05b41e1c8e4fd04a52e3f32c15291b85 354 SUPERFAMILY SSF50129 3 181 1.17E-47 T 13-10-2018 IPR011032 GroES-like superfamily RAM_28175 8e220623a310756c0e4c48f5b679d8d0 290 Pfam PF00296 Luciferase-like monooxygenase 15 247 7.3E-40 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_28175 8e220623a310756c0e4c48f5b679d8d0 290 SUPERFAMILY SSF51679 8 253 3.68E-46 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_28175 8e220623a310756c0e4c48f5b679d8d0 290 Gene3D G3DSA:3.20.20.30 4 287 3.2E-53 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_36985 528ca3a152fdbbce59174b892be9a74f 390 Gene3D G3DSA:3.40.47.10 5 274 4.7E-123 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_36985 528ca3a152fdbbce59174b892be9a74f 390 Pfam PF02803 Thiolase, C-terminal domain 268 389 5.6E-42 T 13-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 RAM_36985 528ca3a152fdbbce59174b892be9a74f 390 ProSitePatterns PS00099 Thiolases active site. 372 385 - T 13-10-2018 IPR020610 Thiolase, active site GO:0016747 RAM_36985 528ca3a152fdbbce59174b892be9a74f 390 SUPERFAMILY SSF53901 1 265 1.51E-55 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_36985 528ca3a152fdbbce59174b892be9a74f 390 Pfam PF00108 Thiolase, N-terminal domain 5 259 4.7E-50 T 13-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 RAM_36985 528ca3a152fdbbce59174b892be9a74f 390 PIRSF PIRSF000429 1 390 8.9E-107 T 13-10-2018 IPR002155 Thiolase GO:0016747 RAM_36985 528ca3a152fdbbce59174b892be9a74f 390 Gene3D G3DSA:3.40.47.10 124 387 4.7E-123 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_36985 528ca3a152fdbbce59174b892be9a74f 390 SUPERFAMILY SSF53901 269 388 4.19E-40 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_36985 528ca3a152fdbbce59174b892be9a74f 390 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 7 388 1.2E-111 T 13-10-2018 IPR002155 Thiolase GO:0016747 RAM_38795 0554db91053a26c4c8e16a0c8261fd0a 172 Gene3D G3DSA:3.30.1360.120 106 172 5.7E-14 T 13-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RAM_38795 0554db91053a26c4c8e16a0c8261fd0a 172 Gene3D G3DSA:3.30.70.1520 10 78 4.0E-11 T 13-10-2018 RAM_38795 0554db91053a26c4c8e16a0c8261fd0a 172 Pfam PF04268 Sarcosine oxidase, gamma subunit family 22 91 2.4E-6 T 13-10-2018 IPR007375 Sarcosine oxidase, gamma subunit KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 RAM_38795 0554db91053a26c4c8e16a0c8261fd0a 172 Pfam PF04268 Sarcosine oxidase, gamma subunit family 110 168 4.1E-6 T 13-10-2018 IPR007375 Sarcosine oxidase, gamma subunit KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 RAM_26385 4fe018db2ef03d3ca15d7787e19c30d0 919 SMART SM00637 816 916 5.5E-45 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_26385 4fe018db2ef03d3ca15d7787e19c30d0 919 Pfam PF00553 Cellulose binding domain 816 916 4.0E-33 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_26385 4fe018db2ef03d3ca15d7787e19c30d0 919 SUPERFAMILY SSF49384 810 917 1.19E-33 T 13-10-2018 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily GO:0030246 RAM_26385 4fe018db2ef03d3ca15d7787e19c30d0 919 Gene3D G3DSA:2.130.10.10 61 468 7.3E-183 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RAM_26385 4fe018db2ef03d3ca15d7787e19c30d0 919 SUPERFAMILY SSF110296 465 780 4.71E-39 T 13-10-2018 RAM_26385 4fe018db2ef03d3ca15d7787e19c30d0 919 Gene3D G3DSA:2.130.10.10 469 778 2.1E-129 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RAM_26385 4fe018db2ef03d3ca15d7787e19c30d0 919 SUPERFAMILY SSF110296 52 457 1.26E-80 T 13-10-2018 RAM_26385 4fe018db2ef03d3ca15d7787e19c30d0 919 Gene3D G3DSA:2.60.40.290 811 919 5.6E-33 T 13-10-2018 IPR012291 CBM2, carbohydrate-binding domain superfamily GO:0004553|GO:0030247 RAM_04200 bcf4eec24f0e89967c3be5994da61d96 107 SMART SM00418 22 100 3.8E-18 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_04200 bcf4eec24f0e89967c3be5994da61d96 107 Gene3D G3DSA:1.10.10.10 9 102 2.6E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_04200 bcf4eec24f0e89967c3be5994da61d96 107 SUPERFAMILY SSF46785 9 99 3.33E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_04200 bcf4eec24f0e89967c3be5994da61d96 107 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 56 71 9.9E-12 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_04200 bcf4eec24f0e89967c3be5994da61d96 107 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 71 86 9.9E-12 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_04200 bcf4eec24f0e89967c3be5994da61d96 107 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 24 39 9.9E-12 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_04200 bcf4eec24f0e89967c3be5994da61d96 107 Pfam PF12840 Helix-turn-helix domain 23 79 1.0E-9 T 13-10-2018 RAM_05425 197e50d18536e3c67a350ce000de81f4 203 Pfam PF08281 Sigma-70, region 4 134 184 8.2E-17 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_05425 197e50d18536e3c67a350ce000de81f4 203 Gene3D G3DSA:1.10.1740.10 23 103 3.0E-25 T 13-10-2018 RAM_05425 197e50d18536e3c67a350ce000de81f4 203 SUPERFAMILY SSF88946 31 114 1.12E-24 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_05425 197e50d18536e3c67a350ce000de81f4 203 SUPERFAMILY SSF88659 110 191 1.87E-17 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_05425 197e50d18536e3c67a350ce000de81f4 203 Gene3D G3DSA:1.10.10.10 132 192 6.3E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_05425 197e50d18536e3c67a350ce000de81f4 203 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 32 186 2.4E-30 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_05425 197e50d18536e3c67a350ce000de81f4 203 Pfam PF04542 Sigma-70 region 2 36 101 3.4E-21 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_23745 50e1c1a768dec5f2b32cd1e8dc6e3b29 265 TIGRFAM TIGR03843 TIGR03843: conserved hypothetical protein 15 265 3.6E-109 T 13-10-2018 IPR022292 Conserved hypothetical protein CHP03843 RAM_15895 ac1b546b6f0b7a2671948c820110d6d4 250 SUPERFAMILY SSF51735 5 246 1.86E-72 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_15895 ac1b546b6f0b7a2671948c820110d6d4 250 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_15895 ac1b546b6f0b7a2671948c820110d6d4 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 3.6E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15895 ac1b546b6f0b7a2671948c820110d6d4 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 3.6E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15895 ac1b546b6f0b7a2671948c820110d6d4 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 3.6E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15895 ac1b546b6f0b7a2671948c820110d6d4 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 3.6E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15895 ac1b546b6f0b7a2671948c820110d6d4 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 3.6E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15895 ac1b546b6f0b7a2671948c820110d6d4 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 3.6E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15895 ac1b546b6f0b7a2671948c820110d6d4 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 3.6E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15895 ac1b546b6f0b7a2671948c820110d6d4 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 3.6E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15895 ac1b546b6f0b7a2671948c820110d6d4 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 3.6E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15895 ac1b546b6f0b7a2671948c820110d6d4 250 Gene3D G3DSA:3.40.50.720 1 246 8.1E-71 T 13-10-2018 RAM_15895 ac1b546b6f0b7a2671948c820110d6d4 250 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 245 1.6E-56 T 13-10-2018 RAM_16455 765231b619ba0b3cef42ed224e6cd23d 333 Gene3D G3DSA:3.10.310.10 7 333 9.7E-129 T 13-10-2018 RAM_16455 765231b619ba0b3cef42ed224e6cd23d 333 Gene3D G3DSA:3.10.310.10 146 310 9.7E-129 T 13-10-2018 RAM_16455 765231b619ba0b3cef42ed224e6cd23d 333 Pfam PF05544 Proline racemase 10 332 5.3E-129 T 13-10-2018 IPR008794 Proline racemase family RAM_16455 765231b619ba0b3cef42ed224e6cd23d 333 PIRSF PIRSF029792 1 333 1.5E-131 T 13-10-2018 IPR008794 Proline racemase family RAM_16455 765231b619ba0b3cef42ed224e6cd23d 333 SUPERFAMILY SSF54506 1 331 1.69E-116 T 13-10-2018 RAM_46125 ea414b8e7bf140a47111d9fb5ae30c59 230 Pfam PF07702 UTRA domain 92 222 1.4E-14 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RAM_46125 ea414b8e7bf140a47111d9fb5ae30c59 230 SUPERFAMILY SSF46785 3 71 4.84E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_46125 ea414b8e7bf140a47111d9fb5ae30c59 230 SMART SM00345 8 67 5.1E-18 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_46125 ea414b8e7bf140a47111d9fb5ae30c59 230 Gene3D G3DSA:3.40.1410.10 76 228 5.2E-19 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RAM_46125 ea414b8e7bf140a47111d9fb5ae30c59 230 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 41 57 2.6E-6 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_46125 ea414b8e7bf140a47111d9fb5ae30c59 230 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 27 41 2.6E-6 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_46125 ea414b8e7bf140a47111d9fb5ae30c59 230 SMART SM00866 86 222 3.8E-9 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RAM_46125 ea414b8e7bf140a47111d9fb5ae30c59 230 Gene3D G3DSA:1.10.10.10 2 68 3.7E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_46125 ea414b8e7bf140a47111d9fb5ae30c59 230 SUPERFAMILY SSF64288 56 227 1.33E-20 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RAM_46125 ea414b8e7bf140a47111d9fb5ae30c59 230 Pfam PF00392 Bacterial regulatory proteins, gntR family 5 67 1.5E-17 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_17015 f01eca66165294caee7c11ae0971c021 331 Gene3D G3DSA:3.20.20.80 46 293 2.7E-16 T 13-10-2018 RAM_17015 f01eca66165294caee7c11ae0971c021 331 SUPERFAMILY SSF51445 24 284 4.79E-12 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_39095 d6e392ed801d2f60bb2911581e4bf710 375 SUPERFAMILY SSF51735 19 202 7.48E-22 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_39095 d6e392ed801d2f60bb2911581e4bf710 375 Gene3D G3DSA:3.40.50.720 20 364 2.9E-52 T 13-10-2018 RAM_39095 d6e392ed801d2f60bb2911581e4bf710 375 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 212 363 1.5E-9 T 13-10-2018 RAM_39095 d6e392ed801d2f60bb2911581e4bf710 375 SUPERFAMILY SSF51735 216 362 2.35E-19 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_39095 d6e392ed801d2f60bb2911581e4bf710 375 Pfam PF08659 KR domain 212 361 1.8E-23 T 13-10-2018 IPR013968 Polyketide synthase, ketoreductase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_10455 16f6901e143a73cecf1e5c4456e8b335 319 Pfam PF01163 RIO1 family 138 299 9.1E-32 T 13-10-2018 RAM_10455 16f6901e143a73cecf1e5c4456e8b335 319 SUPERFAMILY SSF56112 95 289 5.4E-16 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_10455 16f6901e143a73cecf1e5c4456e8b335 319 SMART SM00090 62 315 2.8E-9 T 13-10-2018 IPR000687 RIO kinase GO:0004674|GO:0005524 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1|Reactome: R-HSA-6791226 RAM_10455 16f6901e143a73cecf1e5c4456e8b335 319 Gene3D G3DSA:1.10.510.10 212 316 1.4E-16 T 13-10-2018 RAM_38990 ae64679292276d4040783cb9e89108ba 385 Gene3D G3DSA:1.20.1420.20 134 381 4.1E-69 T 13-10-2018 IPR038352 Imelysin-like domain superfamily RAM_38990 ae64679292276d4040783cb9e89108ba 385 Pfam PF09375 Imelysin 143 372 2.1E-17 T 13-10-2018 IPR018976 Imelysin-like domain RAM_37175 7bd95c96e2865c074e675771e40fd1c2 322 Pfam PF13556 PucR C-terminal helix-turn-helix domain 256 312 2.1E-15 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain RAM_37175 7bd95c96e2865c074e675771e40fd1c2 322 Gene3D G3DSA:1.10.10.2840 190 316 8.4E-17 T 13-10-2018 RAM_02230 20ff19c453fb10207e0f04814aadac80 187 Pfam PF03596 Cadmium resistance transporter 14 184 6.5E-21 T 13-10-2018 IPR004676 Cadmium resistance transporter RAM_07380 681c2985af8db810198a478eb24cf4c3 895 SUPERFAMILY SSF52540 220 492 1.01E-26 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_07380 681c2985af8db810198a478eb24cf4c3 895 Pfam PF13181 Tetratricopeptide repeat 838 869 0.012 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_07380 681c2985af8db810198a478eb24cf4c3 895 Pfam PF13424 Tetratricopeptide repeat 679 749 7.6E-15 T 13-10-2018 RAM_07380 681c2985af8db810198a478eb24cf4c3 895 Pfam PF13424 Tetratricopeptide repeat 759 829 4.7E-12 T 13-10-2018 RAM_07380 681c2985af8db810198a478eb24cf4c3 895 SUPERFAMILY SSF48452 672 870 4.46E-34 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_07380 681c2985af8db810198a478eb24cf4c3 895 PRINTS PR00364 Disease resistance protein signature 422 436 1.6E-6 T 13-10-2018 RAM_07380 681c2985af8db810198a478eb24cf4c3 895 PRINTS PR00364 Disease resistance protein signature 334 348 1.6E-6 T 13-10-2018 RAM_07380 681c2985af8db810198a478eb24cf4c3 895 PRINTS PR00364 Disease resistance protein signature 256 271 1.6E-6 T 13-10-2018 RAM_07380 681c2985af8db810198a478eb24cf4c3 895 Pfam PF00931 NB-ARC domain 253 494 7.3E-13 T 13-10-2018 IPR002182 NB-ARC GO:0043531 Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-6798695|Reactome: R-HSA-6803207|Reactome: R-HSA-8953750 RAM_07380 681c2985af8db810198a478eb24cf4c3 895 Gene3D G3DSA:1.25.40.10 645 895 5.0E-58 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_07380 681c2985af8db810198a478eb24cf4c3 895 Gene3D G3DSA:3.40.50.300 216 378 4.5E-29 T 13-10-2018 RAM_07380 681c2985af8db810198a478eb24cf4c3 895 SMART SM00028 838 871 0.0044 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_07380 681c2985af8db810198a478eb24cf4c3 895 SMART SM00028 758 791 0.022 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_07380 681c2985af8db810198a478eb24cf4c3 895 SMART SM00028 718 751 98.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_07380 681c2985af8db810198a478eb24cf4c3 895 SMART SM00028 678 711 7.1E-5 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_07380 681c2985af8db810198a478eb24cf4c3 895 SMART SM00028 798 831 0.0085 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_39175 f146cabdf18ac0ff2a21e76c51899045 129 Gene3D G3DSA:3.40.50.2000 115 126 8.3E-14 T 13-10-2018 RAM_39175 f146cabdf18ac0ff2a21e76c51899045 129 Gene3D G3DSA:3.40.50.2000 56 114 8.3E-14 T 13-10-2018 RAM_39175 f146cabdf18ac0ff2a21e76c51899045 129 SUPERFAMILY SSF53756 18 128 2.29E-11 T 13-10-2018 RAM_20985 1f7a95a7cfd6bffbdc73a786d4a57efb 865 Pfam PF03648 Glycosyl hydrolase family 67 N-terminus 105 195 4.9E-16 T 13-10-2018 IPR005154 Alpha glucuronidase, N-terminal GO:0045493|GO:0046559 RAM_20985 1f7a95a7cfd6bffbdc73a786d4a57efb 865 Pfam PF07488 Glycosyl hydrolase family 67 middle domain 199 553 2.5E-111 T 13-10-2018 IPR011100 Glycosyl hydrolase family 67, catalytic domain GO:0005576|GO:0045493|GO:0046559 RAM_20985 1f7a95a7cfd6bffbdc73a786d4a57efb 865 Gene3D G3DSA:3.20.20.80 215 574 5.3E-116 T 13-10-2018 RAM_20985 1f7a95a7cfd6bffbdc73a786d4a57efb 865 Gene3D G3DSA:3.30.379.10 100 212 1.2E-30 T 13-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 RAM_20985 1f7a95a7cfd6bffbdc73a786d4a57efb 865 Gene3D G3DSA:3.90.1330.10 577 784 2.6E-79 T 13-10-2018 IPR037054 Alpha-glucuronidase, C-terminal domain superfamily GO:0005576|GO:0045493|GO:0046559 RAM_20985 1f7a95a7cfd6bffbdc73a786d4a57efb 865 SUPERFAMILY SSF51445 217 778 3.68E-170 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_20985 1f7a95a7cfd6bffbdc73a786d4a57efb 865 SUPERFAMILY SSF55545 48 215 1.52E-26 T 13-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 RAM_20985 1f7a95a7cfd6bffbdc73a786d4a57efb 865 Pfam PF07477 Glycosyl hydrolase family 67 C-terminus 555 777 6.5E-85 T 13-10-2018 IPR011099 Glycosyl hydrolase family 67, C-terminal GO:0005576|GO:0045493|GO:0046559 RAM_12850 5974bb4c2e3f4f2f08b086f0f6c8efb5 353 Pfam PF12706 Beta-lactamase superfamily domain 106 301 7.7E-50 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_12850 5974bb4c2e3f4f2f08b086f0f6c8efb5 353 PIRSF PIRSF038896 2 337 6.7E-92 T 13-10-2018 IPR024884 N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D GO:0008270|GO:0070290 Reactome: R-HSA-2466712 RAM_12850 5974bb4c2e3f4f2f08b086f0f6c8efb5 353 SUPERFAMILY SSF56281 89 340 3.41E-35 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_12850 5974bb4c2e3f4f2f08b086f0f6c8efb5 353 Gene3D G3DSA:3.60.15.10 77 343 1.2E-82 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_44685 d8db9970ea854299c94aa884480dbd10 273 Gene3D G3DSA:3.40.50.1220 15 261 3.9E-41 T 13-10-2018 RAM_44685 d8db9970ea854299c94aa884480dbd10 273 Gene3D G3DSA:3.30.1600.10 29 187 3.9E-41 T 13-10-2018 IPR026591 Sirtuin, catalytic core small domain superfamily RAM_44685 d8db9970ea854299c94aa884480dbd10 273 SUPERFAMILY SSF52467 4 265 2.48E-60 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily RAM_44685 d8db9970ea854299c94aa884480dbd10 273 Pfam PF02146 Sir2 family 20 181 2.6E-19 T 13-10-2018 IPR003000 Sirtuin family GO:0070403 RAM_11840 e9e82fdd84454481f82f97eef8e3187f 294 SUPERFAMILY SSF51730 3 290 4.71E-88 T 13-10-2018 IPR029041 FAD-linked oxidoreductase-like RAM_11840 e9e82fdd84454481f82f97eef8e3187f 294 Gene3D G3DSA:3.20.20.220 2 294 1.3E-93 T 13-10-2018 RAM_11840 e9e82fdd84454481f82f97eef8e3187f 294 Pfam PF02219 Methylenetetrahydrofolate reductase 12 288 1.8E-88 T 13-10-2018 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 RAM_23235 8d1180cda72167df9f5e93f0c320adf6 396 Pfam PF00817 impB/mucB/samB family 11 151 4.0E-45 T 13-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 RAM_23235 8d1180cda72167df9f5e93f0c320adf6 396 Hamap MF_01113 DNA polymerase IV [dinB]. 4 363 32.713 T 13-10-2018 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 RAM_23235 8d1180cda72167df9f5e93f0c320adf6 396 SUPERFAMILY SSF100879 238 340 6.87E-20 T 13-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 RAM_23235 8d1180cda72167df9f5e93f0c320adf6 396 Gene3D G3DSA:1.10.150.20 170 235 4.5E-20 T 13-10-2018 RAM_23235 8d1180cda72167df9f5e93f0c320adf6 396 Gene3D G3DSA:3.30.1490.100 239 347 1.5E-19 T 13-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 RAM_23235 8d1180cda72167df9f5e93f0c320adf6 396 Gene3D G3DSA:2.30.40.20 14 66 7.1E-25 T 13-10-2018 RAM_23235 8d1180cda72167df9f5e93f0c320adf6 396 Pfam PF11798 IMS family HHH motif 165 195 1.8E-8 T 13-10-2018 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 RAM_23235 8d1180cda72167df9f5e93f0c320adf6 396 SUPERFAMILY SSF56672 6 233 4.45E-75 T 13-10-2018 RAM_23235 8d1180cda72167df9f5e93f0c320adf6 396 Gene3D G3DSA:3.30.70.270 67 169 1.2E-25 T 13-10-2018 RAM_23235 8d1180cda72167df9f5e93f0c320adf6 396 Pfam PF11799 impB/mucB/samB family C-terminal domain 238 345 3.4E-19 T 13-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 RAM_32900 90ab4cf42c80b99c4214b6635ca9827a 120 SUPERFAMILY SSF54909 3 112 1.34E-30 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_32900 90ab4cf42c80b99c4214b6635ca9827a 120 Pfam PF03795 YCII-related domain 4 112 3.3E-15 T 13-10-2018 IPR005545 YCII-related RAM_32900 90ab4cf42c80b99c4214b6635ca9827a 120 Gene3D G3DSA:3.30.70.1060 1 115 4.0E-34 T 13-10-2018 RAM_35300 9966a1b02e819503d9ddbea2faed1a6c 206 SUPERFAMILY SSF55821 1 203 1.16E-58 T 13-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily RAM_35300 9966a1b02e819503d9ddbea2faed1a6c 206 Pfam PF01300 Telomere recombination 22 198 8.0E-42 T 13-10-2018 IPR006070 YrdC-like domain GO:0003725 RAM_35300 9966a1b02e819503d9ddbea2faed1a6c 206 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 8 200 5.6E-52 T 13-10-2018 IPR006070 YrdC-like domain GO:0003725 RAM_35300 9966a1b02e819503d9ddbea2faed1a6c 206 Gene3D G3DSA:3.90.870.10 1 205 7.5E-60 T 13-10-2018 RAM_38330 a843475d2df94009f330fce7ed686e2e 361 Gene3D G3DSA:3.40.50.1820 13 349 5.8E-73 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_38330 a843475d2df94009f330fce7ed686e2e 361 Pfam PF03403 Platelet-activating factor acetylhydrolase, isoform II 21 158 6.6E-7 T 13-10-2018 IPR005065 Platelet-activating factor acetylhydrolase-like GO:0003847|GO:0016042 KEGG: 00565+3.1.1.47 RAM_38330 a843475d2df94009f330fce7ed686e2e 361 Pfam PF03403 Platelet-activating factor acetylhydrolase, isoform II 206 338 6.5E-5 T 13-10-2018 IPR005065 Platelet-activating factor acetylhydrolase-like GO:0003847|GO:0016042 KEGG: 00565+3.1.1.47 RAM_38330 a843475d2df94009f330fce7ed686e2e 361 SUPERFAMILY SSF53474 55 344 8.25E-23 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_14260 91ebf7807d00087c9740f989c2c0082b 507 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 25 208 3.5E-62 T 13-10-2018 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 RAM_14260 91ebf7807d00087c9740f989c2c0082b 507 SUPERFAMILY SSF55347 198 505 9.81E-111 T 13-10-2018 RAM_14260 91ebf7807d00087c9740f989c2c0082b 507 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 188 216 1.3E-48 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 RAM_14260 91ebf7807d00087c9740f989c2c0082b 507 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 347 373 1.3E-48 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 RAM_14260 91ebf7807d00087c9740f989c2c0082b 507 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 164 177 1.3E-48 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 RAM_14260 91ebf7807d00087c9740f989c2c0082b 507 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 258 274 1.3E-48 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 RAM_14260 91ebf7807d00087c9740f989c2c0082b 507 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 240 257 1.3E-48 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 RAM_14260 91ebf7807d00087c9740f989c2c0082b 507 ProSitePatterns PS00069 Glucose-6-phosphate dehydrogenase active site. 198 204 - T 13-10-2018 IPR019796 Glucose-6-phosphate dehydrogenase, active site GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 RAM_14260 91ebf7807d00087c9740f989c2c0082b 507 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 210 505 1.0E-110 T 13-10-2018 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 RAM_14260 91ebf7807d00087c9740f989c2c0082b 507 PIRSF PIRSF000110 8 507 5.7E-177 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 RAM_14260 91ebf7807d00087c9740f989c2c0082b 507 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 21 506 86.871 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 RAM_14260 91ebf7807d00087c9740f989c2c0082b 507 SUPERFAMILY SSF51735 8 211 2.89E-62 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_14260 91ebf7807d00087c9740f989c2c0082b 507 Gene3D G3DSA:3.30.360.10 197 506 5.3E-119 T 13-10-2018 RAM_14260 91ebf7807d00087c9740f989c2c0082b 507 Gene3D G3DSA:3.40.50.720 20 196 5.5E-55 T 13-10-2018 RAM_14260 91ebf7807d00087c9740f989c2c0082b 507 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 22 506 8.5E-198 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 RAM_30835 727d795aff46767fc43cab1445a87bf5 209 Pfam PF00293 NUDIX domain 48 158 1.0E-12 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RAM_30835 727d795aff46767fc43cab1445a87bf5 209 Gene3D G3DSA:3.90.79.10 5 209 3.9E-58 T 13-10-2018 RAM_30835 727d795aff46767fc43cab1445a87bf5 209 SUPERFAMILY SSF55811 11 180 2.57E-39 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RAM_05300 c680512a1710f0fe817d7b6a0861ad56 194 Pfam PF03641 Possible lysine decarboxylase 46 174 6.5E-41 T 13-10-2018 IPR031100 LOG family RAM_05300 c680512a1710f0fe817d7b6a0861ad56 194 Gene3D G3DSA:3.40.50.450 1 192 1.3E-78 T 13-10-2018 RAM_05300 c680512a1710f0fe817d7b6a0861ad56 194 SUPERFAMILY SSF102405 1 179 7.48E-62 T 13-10-2018 RAM_05300 c680512a1710f0fe817d7b6a0861ad56 194 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 3 179 3.6E-59 T 13-10-2018 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG RAM_36810 e4bfa56eb16740b5d5b92cbf506adc59 348 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 210 343 2.4E-25 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_36810 e4bfa56eb16740b5d5b92cbf506adc59 348 Gene3D G3DSA:1.10.540.10 2 116 4.6E-32 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_36810 e4bfa56eb16740b5d5b92cbf506adc59 348 SUPERFAMILY SSF56645 3 197 2.36E-38 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_36810 e4bfa56eb16740b5d5b92cbf506adc59 348 Gene3D G3DSA:2.40.110.10 117 210 9.4E-13 T 13-10-2018 RAM_36810 e4bfa56eb16740b5d5b92cbf506adc59 348 Gene3D G3DSA:1.20.140.10 212 346 1.3E-36 T 13-10-2018 RAM_36810 e4bfa56eb16740b5d5b92cbf506adc59 348 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 5 114 1.3E-23 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_36810 e4bfa56eb16740b5d5b92cbf506adc59 348 SUPERFAMILY SSF47203 209 345 2.09E-35 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_07995 1b181d5011559646c8e48728c57653d1 446 SMART SM00829 50 416 3.8E-9 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_07995 1b181d5011559646c8e48728c57653d1 446 Pfam PF00107 Zinc-binding dehydrogenase 237 381 1.3E-36 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RAM_07995 1b181d5011559646c8e48728c57653d1 446 Gene3D G3DSA:3.40.50.720 220 366 1.3E-223 T 13-10-2018 RAM_07995 1b181d5011559646c8e48728c57653d1 446 TIGRFAM TIGR01751 crot-CoA-red: crotonyl-CoA carboxylase/reductase 32 429 3.0E-185 T 13-10-2018 IPR010085 Crotonyl-CoA reductase GO:0043880 KEGG: 00650+1.3.1.86 RAM_07995 1b181d5011559646c8e48728c57653d1 446 SUPERFAMILY SSF50129 51 231 8.99E-28 T 13-10-2018 IPR011032 GroES-like superfamily RAM_07995 1b181d5011559646c8e48728c57653d1 446 SUPERFAMILY SSF51735 199 394 2.0E-35 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_07995 1b181d5011559646c8e48728c57653d1 446 Gene3D G3DSA:3.90.180.10 16 434 1.3E-223 T 13-10-2018 RAM_07995 1b181d5011559646c8e48728c57653d1 446 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 116 191 1.6E-5 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_16450 6e804b558435d1e59a6647627527f774 303 Pfam PF00701 Dihydrodipicolinate synthetase family 28 293 5.6E-48 T 13-10-2018 IPR002220 DapA-like GO:0016829 RAM_16450 6e804b558435d1e59a6647627527f774 303 PRINTS PR00146 Dihydrodipicolinate synthase signature 113 129 6.1E-7 T 13-10-2018 IPR002220 DapA-like GO:0016829 RAM_16450 6e804b558435d1e59a6647627527f774 303 PRINTS PR00146 Dihydrodipicolinate synthase signature 137 154 6.1E-7 T 13-10-2018 IPR002220 DapA-like GO:0016829 RAM_16450 6e804b558435d1e59a6647627527f774 303 PRINTS PR00146 Dihydrodipicolinate synthase signature 45 66 6.1E-7 T 13-10-2018 IPR002220 DapA-like GO:0016829 RAM_16450 6e804b558435d1e59a6647627527f774 303 PIRSF PIRSF001365 1 302 1.6E-72 T 13-10-2018 IPR002220 DapA-like GO:0016829 RAM_16450 6e804b558435d1e59a6647627527f774 303 SMART SM01130 5 297 3.2E-89 T 13-10-2018 IPR002220 DapA-like GO:0016829 RAM_16450 6e804b558435d1e59a6647627527f774 303 SUPERFAMILY SSF51569 2 294 2.2E-78 T 13-10-2018 RAM_16450 6e804b558435d1e59a6647627527f774 303 Gene3D G3DSA:3.20.20.70 3 298 4.0E-83 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_41970 48b5f0313659b73886e60ab47cff15aa 615 SUPERFAMILY SSF103473 9 373 4.58E-38 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_41970 48b5f0313659b73886e60ab47cff15aa 615 Gene3D G3DSA:3.40.50.1820 387 609 1.8E-32 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_41970 48b5f0313659b73886e60ab47cff15aa 615 Pfam PF00561 alpha/beta hydrolase fold 391 493 9.2E-10 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_41970 48b5f0313659b73886e60ab47cff15aa 615 Pfam PF06779 Uncharacterised MFS-type transporter YbfB 8 360 1.6E-58 T 13-10-2018 IPR010645 Uncharacterised MFS-type transporter YbfB RAM_41970 48b5f0313659b73886e60ab47cff15aa 615 Gene3D G3DSA:1.20.1250.20 186 373 5.8E-16 T 13-10-2018 RAM_41970 48b5f0313659b73886e60ab47cff15aa 615 SUPERFAMILY SSF53474 390 605 6.21E-26 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_41970 48b5f0313659b73886e60ab47cff15aa 615 Gene3D G3DSA:1.20.1250.20 3 176 1.8E-13 T 13-10-2018 RAM_34070 5dbd34bc114357ced31d40f4139f03e8 521 Pfam PF13777 Domain of unknown function (DUF4173) 284 474 1.0E-56 T 13-10-2018 IPR025231 Domain of unknown function DUF4173 RAM_32710 eeedbe066747655ced2e98ff3f5b443a 645 SUPERFAMILY SSF49503 497 621 1.53E-24 T 13-10-2018 IPR008972 Cupredoxin RAM_32710 eeedbe066747655ced2e98ff3f5b443a 645 Pfam PF07732 Multicopper oxidase 174 241 1.8E-7 T 13-10-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 RAM_32710 eeedbe066747655ced2e98ff3f5b443a 645 Gene3D G3DSA:2.60.40.420 239 421 3.1E-49 T 13-10-2018 IPR008972 Cupredoxin RAM_32710 eeedbe066747655ced2e98ff3f5b443a 645 ProSitePatterns PS00080 Multicopper oxidases signature 2. 602 613 - T 13-10-2018 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 RAM_32710 eeedbe066747655ced2e98ff3f5b443a 645 ProSitePatterns PS00079 Multicopper oxidases signature 1. 597 617 - T 13-10-2018 IPR033138 Multicopper oxidases, conserved site RAM_32710 eeedbe066747655ced2e98ff3f5b443a 645 Pfam PF07731 Multicopper oxidase 497 622 3.4E-24 T 13-10-2018 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 RAM_32710 eeedbe066747655ced2e98ff3f5b443a 645 Gene3D G3DSA:2.60.40.420 46 238 7.1E-50 T 13-10-2018 IPR008972 Cupredoxin RAM_32710 eeedbe066747655ced2e98ff3f5b443a 645 SUPERFAMILY SSF49503 247 383 6.84E-12 T 13-10-2018 IPR008972 Cupredoxin RAM_32710 eeedbe066747655ced2e98ff3f5b443a 645 SUPERFAMILY SSF49503 57 243 4.39E-21 T 13-10-2018 IPR008972 Cupredoxin RAM_32710 eeedbe066747655ced2e98ff3f5b443a 645 Gene3D G3DSA:2.60.40.420 428 643 9.1E-52 T 13-10-2018 IPR008972 Cupredoxin RAM_26950 b3674630f88a66ee19a5a4eb370caadd 137 SUPERFAMILY SSF51182 5 114 2.72E-16 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RAM_26950 b3674630f88a66ee19a5a4eb370caadd 137 Pfam PF07883 Cupin domain 40 91 7.2E-11 T 13-10-2018 IPR013096 Cupin 2, conserved barrel RAM_26950 b3674630f88a66ee19a5a4eb370caadd 137 Gene3D G3DSA:2.60.120.10 1 137 1.8E-26 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_18505 45cb90816c0ef966f1030ea43b008191 265 SUPERFAMILY SSF55909 2 257 3.14E-52 T 13-10-2018 RAM_18505 45cb90816c0ef966f1030ea43b008191 265 Pfam PF02274 Amidinotransferase 52 256 1.0E-12 T 13-10-2018 RAM_18505 45cb90816c0ef966f1030ea43b008191 265 Gene3D G3DSA:3.75.10.10 4 255 1.4E-57 T 13-10-2018 RAM_47710 63a792b456265e0409aebe445f2afad4 469 Pfam PF00772 DnaB-like helicase N terminal domain 31 133 1.1E-34 T 13-10-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 RAM_47710 63a792b456265e0409aebe445f2afad4 469 Gene3D G3DSA:1.10.860.10 27 192 3.3E-60 T 13-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal RAM_47710 63a792b456265e0409aebe445f2afad4 469 SMART SM00382 228 425 1.6E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_47710 63a792b456265e0409aebe445f2afad4 469 Gene3D G3DSA:3.40.50.300 194 469 2.5E-100 T 13-10-2018 RAM_47710 63a792b456265e0409aebe445f2afad4 469 SUPERFAMILY SSF52540 210 453 6.07E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_47710 63a792b456265e0409aebe445f2afad4 469 SUPERFAMILY SSF48024 30 141 1.03E-38 T 13-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 RAM_47710 63a792b456265e0409aebe445f2afad4 469 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 32 467 2.8E-159 T 13-10-2018 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 RAM_47710 63a792b456265e0409aebe445f2afad4 469 Pfam PF03796 DnaB-like helicase C terminal domain 211 464 3.7E-100 T 13-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 RAM_34395 bcc297f2212d4ef6f78a64bae3e3bced 86 Pfam PF01016 Ribosomal L27 protein 2 80 3.5E-36 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_34395 bcc297f2212d4ef6f78a64bae3e3bced 86 PRINTS PR00063 Ribosomal protein L27 signature 29 53 1.7E-36 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_34395 bcc297f2212d4ef6f78a64bae3e3bced 86 PRINTS PR00063 Ribosomal protein L27 signature 54 78 1.7E-36 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_34395 bcc297f2212d4ef6f78a64bae3e3bced 86 PRINTS PR00063 Ribosomal protein L27 signature 4 28 1.7E-36 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_34395 bcc297f2212d4ef6f78a64bae3e3bced 86 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 69 5.0E-16 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_34395 bcc297f2212d4ef6f78a64bae3e3bced 86 SUPERFAMILY SSF110324 2 83 1.01E-31 T 13-10-2018 RAM_34395 bcc297f2212d4ef6f78a64bae3e3bced 86 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 13-10-2018 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_34395 bcc297f2212d4ef6f78a64bae3e3bced 86 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 81 3.2E-36 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_34395 bcc297f2212d4ef6f78a64bae3e3bced 86 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 83 27.442 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_34395 bcc297f2212d4ef6f78a64bae3e3bced 86 Gene3D G3DSA:2.40.50.100 21 86 9.4E-27 T 13-10-2018 RAM_25610 ebd40ce5ac84647fb49417e5b36dc181 583 SMART SM00382 368 554 2.3E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_25610 ebd40ce5ac84647fb49417e5b36dc181 583 SUPERFAMILY SSF52540 335 577 1.07E-64 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_25610 ebd40ce5ac84647fb49417e5b36dc181 583 Pfam PF00005 ABC transporter 359 508 2.3E-25 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_25610 ebd40ce5ac84647fb49417e5b36dc181 583 SUPERFAMILY SSF90123 20 332 8.76E-60 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RAM_25610 ebd40ce5ac84647fb49417e5b36dc181 583 Pfam PF00664 ABC transporter transmembrane region 33 299 5.3E-34 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 RAM_25610 ebd40ce5ac84647fb49417e5b36dc181 583 Gene3D G3DSA:3.40.50.300 339 582 4.3E-67 T 13-10-2018 RAM_25610 ebd40ce5ac84647fb49417e5b36dc181 583 Gene3D G3DSA:1.20.1560.10 8 331 2.7E-57 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RAM_36190 d79a4ca9d0ea8e805f10fb2e6bd5169e 204 TIGRFAM TIGR00708 cobA: cob(I)yrinic acid a,c-diamide adenosyltransferase 19 204 6.1E-74 T 13-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 RAM_36190 d79a4ca9d0ea8e805f10fb2e6bd5169e 204 Pfam PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 22 204 5.4E-57 T 13-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 RAM_36190 d79a4ca9d0ea8e805f10fb2e6bd5169e 204 SUPERFAMILY SSF52540 12 204 2.26E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_36190 d79a4ca9d0ea8e805f10fb2e6bd5169e 204 PIRSF PIRSF015617 1 204 8.3E-63 T 13-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 RAM_36190 d79a4ca9d0ea8e805f10fb2e6bd5169e 204 Gene3D G3DSA:3.40.50.300 7 204 1.6E-58 T 13-10-2018 RAM_11025 c25ba083594ac26562b4a9544935e4a7 247 Hamap MF_00013 Octanoyltransferase [lipB]. 14 221 33.833 T 13-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 RAM_11025 c25ba083594ac26562b4a9544935e4a7 247 SUPERFAMILY SSF55681 14 220 6.71E-65 T 13-10-2018 RAM_11025 c25ba083594ac26562b4a9544935e4a7 247 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 84 136 1.0E-18 T 13-10-2018 RAM_11025 c25ba083594ac26562b4a9544935e4a7 247 Gene3D G3DSA:3.30.930.10 9 219 4.0E-78 T 13-10-2018 RAM_11025 c25ba083594ac26562b4a9544935e4a7 247 PIRSF PIRSF016262 10 227 8.5E-60 T 13-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 RAM_11025 c25ba083594ac26562b4a9544935e4a7 247 ProSitePatterns PS01313 Lipoate-protein ligase B signature. 80 95 - T 13-10-2018 IPR020605 Octanoyltransferase, conserved site GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 RAM_11025 c25ba083594ac26562b4a9544935e4a7 247 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 40 209 4.1E-39 T 13-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 RAM_11025 c25ba083594ac26562b4a9544935e4a7 247 Pfam PF03099 Biotin/lipoate A/B protein ligase family 72 173 5.9E-8 T 13-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 RAM_34165 ae961d9845f458202995ed808f67529f 306 Gene3D G3DSA:3.40.50.620 13 216 1.4E-57 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAM_34165 ae961d9845f458202995ed808f67529f 306 PIRSF PIRSF002936 7 306 4.0E-134 T 13-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 RAM_34165 ae961d9845f458202995ed808f67529f 306 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 36 260 1.5E-45 T 13-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 RAM_34165 ae961d9845f458202995ed808f67529f 306 SUPERFAMILY SSF52402 10 213 5.51E-64 T 13-10-2018 RAM_34165 ae961d9845f458202995ed808f67529f 306 TIGRFAM TIGR02039 CysD: sulfate adenylyltransferase, small subunit 15 306 5.5E-140 T 13-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 RAM_47075 5027ad35bc2dc1e1f4562ddc344e3850 397 SUPERFAMILY SSF51905 2 352 8.98E-58 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_47075 5027ad35bc2dc1e1f4562ddc344e3850 397 Gene3D G3DSA:3.50.50.60 3 358 2.2E-78 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_47075 5027ad35bc2dc1e1f4562ddc344e3850 397 Pfam PF01494 FAD binding domain 2 345 1.1E-30 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_47075 5027ad35bc2dc1e1f4562ddc344e3850 397 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 148 163 9.6E-21 T 13-10-2018 RAM_47075 5027ad35bc2dc1e1f4562ddc344e3850 397 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 284 299 9.6E-21 T 13-10-2018 RAM_47075 5027ad35bc2dc1e1f4562ddc344e3850 397 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 3 25 9.6E-21 T 13-10-2018 RAM_47075 5027ad35bc2dc1e1f4562ddc344e3850 397 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 299 315 9.6E-21 T 13-10-2018 RAM_35440 c616a50f4c660d6553fb92dcb4e493ff 576 SUPERFAMILY SSF52777 9 362 4.39E-94 T 13-10-2018 RAM_35440 c616a50f4c660d6553fb92dcb4e493ff 576 SUPERFAMILY SSF52777 370 574 5.17E-56 T 13-10-2018 RAM_35440 c616a50f4c660d6553fb92dcb4e493ff 576 ProSitePatterns PS00440 Acyltransferases ChoActase / COT / CPT family signature 2. 282 309 - T 13-10-2018 IPR000542 Acyltransferase ChoActase/COT/CPT GO:0016746 RAM_35440 c616a50f4c660d6553fb92dcb4e493ff 576 Gene3D G3DSA:3.30.559.70 78 368 1.1E-151 T 13-10-2018 RAM_35440 c616a50f4c660d6553fb92dcb4e493ff 576 Pfam PF00755 Choline/Carnitine o-acyltransferase 17 570 2.1E-154 T 13-10-2018 IPR039551 Choline/carnitine acyltransferase domain RAM_35440 c616a50f4c660d6553fb92dcb4e493ff 576 Gene3D G3DSA:3.30.559.40 17 570 1.1E-151 T 13-10-2018 RAM_36145 22074313eb08bd2a1ebc415c860d8a90 493 Gene3D G3DSA:3.40.50.300 3 235 2.2E-52 T 13-10-2018 RAM_36145 22074313eb08bd2a1ebc415c860d8a90 493 SUPERFAMILY SSF52540 1 238 1.11E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_36145 22074313eb08bd2a1ebc415c860d8a90 493 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 4 230 2.9E-23 T 13-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain RAM_36145 22074313eb08bd2a1ebc415c860d8a90 493 Hamap MF_00028 Cobyric acid synthase [cobQ]. 1 480 168.24 T 13-10-2018 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 RAM_36145 22074313eb08bd2a1ebc415c860d8a90 493 Gene3D G3DSA:3.40.50.880 251 421 1.8E-26 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_36145 22074313eb08bd2a1ebc415c860d8a90 493 SUPERFAMILY SSF52317 251 417 5.02E-35 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_36145 22074313eb08bd2a1ebc415c860d8a90 493 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 253 423 6.5E-39 T 13-10-2018 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 RAM_36145 22074313eb08bd2a1ebc415c860d8a90 493 TIGRFAM TIGR00313 cobQ: cobyric acid synthase CobQ 4 472 3.0E-131 T 13-10-2018 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 RAM_19625 f9c4835a89136e60df3ad35eceed3148 253 SUPERFAMILY SSF51735 1 250 3.18E-57 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_19625 f9c4835a89136e60df3ad35eceed3148 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 77 88 5.1E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19625 f9c4835a89136e60df3ad35eceed3148 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 139 147 5.1E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19625 f9c4835a89136e60df3ad35eceed3148 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 178 5.1E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19625 f9c4835a89136e60df3ad35eceed3148 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 133 149 1.2E-28 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19625 f9c4835a89136e60df3ad35eceed3148 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 1.2E-28 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19625 f9c4835a89136e60df3ad35eceed3148 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.2E-28 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19625 f9c4835a89136e60df3ad35eceed3148 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 1.2E-28 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19625 f9c4835a89136e60df3ad35eceed3148 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 1.2E-28 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19625 f9c4835a89136e60df3ad35eceed3148 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 1.2E-28 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19625 f9c4835a89136e60df3ad35eceed3148 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 146 174 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_19625 f9c4835a89136e60df3ad35eceed3148 253 Pfam PF00106 short chain dehydrogenase 7 199 5.7E-42 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19625 f9c4835a89136e60df3ad35eceed3148 253 Gene3D G3DSA:3.40.50.720 1 253 2.8E-68 T 13-10-2018 RAM_25075 8120927e4c3db83b71c5a80ebc52e6da 414 Gene3D G3DSA:1.20.1250.20 8 394 4.9E-29 T 13-10-2018 RAM_25075 8120927e4c3db83b71c5a80ebc52e6da 414 SUPERFAMILY SSF103473 10 397 2.22E-35 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_25075 8120927e4c3db83b71c5a80ebc52e6da 414 Pfam PF07690 Major Facilitator Superfamily 13 350 9.3E-19 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_02535 706a7dfecba484905fc1b22b6efb3fe9 433 Gene3D G3DSA:3.40.640.10 73 320 6.1E-154 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_02535 706a7dfecba484905fc1b22b6efb3fe9 433 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 238 274 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RAM_02535 706a7dfecba484905fc1b22b6efb3fe9 433 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 7 428 94.211 T 13-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 RAM_02535 706a7dfecba484905fc1b22b6efb3fe9 433 Gene3D G3DSA:3.90.1150.10 11 414 6.1E-154 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_02535 706a7dfecba484905fc1b22b6efb3fe9 433 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 8 424 1.1E-174 T 13-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 RAM_02535 706a7dfecba484905fc1b22b6efb3fe9 433 SUPERFAMILY SSF53383 5 424 6.95E-115 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_02535 706a7dfecba484905fc1b22b6efb3fe9 433 Pfam PF00202 Aminotransferase class-III 37 421 5.6E-82 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RAM_47585 4038ab6d75d43fe5bd772e9d57b68eae 405 PRINTS PR01035 Tetracycline resistance protein signature 29 45 4.0E-9 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RAM_47585 4038ab6d75d43fe5bd772e9d57b68eae 405 PRINTS PR01035 Tetracycline resistance protein signature 143 165 4.0E-9 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RAM_47585 4038ab6d75d43fe5bd772e9d57b68eae 405 PRINTS PR01035 Tetracycline resistance protein signature 171 191 4.0E-9 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RAM_47585 4038ab6d75d43fe5bd772e9d57b68eae 405 Pfam PF07690 Major Facilitator Superfamily 24 262 1.7E-27 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_47585 4038ab6d75d43fe5bd772e9d57b68eae 405 Gene3D G3DSA:1.20.1250.20 12 387 6.6E-55 T 13-10-2018 RAM_47585 4038ab6d75d43fe5bd772e9d57b68eae 405 SUPERFAMILY SSF103473 15 389 4.05E-57 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_23180 9ac756262868ebed4dea8ad872e1c10b 1072 Gene3D G3DSA:3.20.20.80 504 892 1.4E-74 T 13-10-2018 RAM_23180 9ac756262868ebed4dea8ad872e1c10b 1072 SUPERFAMILY SSF49785 291 419 5.59E-17 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_23180 9ac756262868ebed4dea8ad872e1c10b 1072 Gene3D G3DSA:2.60.40.1180 944 1061 2.6E-12 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta RAM_23180 9ac756262868ebed4dea8ad872e1c10b 1072 Gene3D G3DSA:2.60.120.260 292 430 5.7E-29 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_23180 9ac756262868ebed4dea8ad872e1c10b 1072 Pfam PF16990 Carbohydrate binding module (family 35) 142 268 3.6E-11 T 13-10-2018 IPR005084 Carbohydrate binding module family 6 GO:0030246 RAM_23180 9ac756262868ebed4dea8ad872e1c10b 1072 Pfam PF17137 Domain of unknown function (DUF5110) 966 1028 8.6E-9 T 13-10-2018 IPR033403 Domain of unknown function DUF5110 RAM_23180 9ac756262868ebed4dea8ad872e1c10b 1072 Gene3D G3DSA:2.60.40.1180 893 943 1.2E-13 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta RAM_23180 9ac756262868ebed4dea8ad872e1c10b 1072 Gene3D G3DSA:2.60.120.260 139 269 1.0E-32 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_23180 9ac756262868ebed4dea8ad872e1c10b 1072 SUPERFAMILY SSF51445 507 859 6.62E-37 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_23180 9ac756262868ebed4dea8ad872e1c10b 1072 Pfam PF03422 Carbohydrate binding module (family 6) 301 420 2.8E-9 T 13-10-2018 IPR005084 Carbohydrate binding module family 6 GO:0030246 RAM_23180 9ac756262868ebed4dea8ad872e1c10b 1072 SUPERFAMILY SSF51011 861 942 4.53E-19 T 13-10-2018 RAM_23180 9ac756262868ebed4dea8ad872e1c10b 1072 SUPERFAMILY SSF49785 142 269 4.37E-20 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_23180 9ac756262868ebed4dea8ad872e1c10b 1072 Pfam PF01055 Glycosyl hydrolases family 31 497 946 1.2E-80 T 13-10-2018 IPR000322 Glycoside hydrolase family 31 GO:0004553|GO:0005975 RAM_27355 77cad3fcd1dad70fa7e38e92ab823725 280 SUPERFAMILY SSF161098 5 280 7.1E-50 T 13-10-2018 IPR035906 MetI-like superfamily RAM_27355 77cad3fcd1dad70fa7e38e92ab823725 280 Gene3D G3DSA:1.10.3720.10 5 271 1.2E-46 T 13-10-2018 IPR035906 MetI-like superfamily RAM_27355 77cad3fcd1dad70fa7e38e92ab823725 280 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 109 266 1.1E-9 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_37370 e208dae2e00a654f7ed4e0ed3aec9639 215 Gene3D G3DSA:1.20.1050.10 83 194 3.9E-60 T 13-10-2018 RAM_37370 e208dae2e00a654f7ed4e0ed3aec9639 215 SUPERFAMILY SSF52833 2 88 4.84E-17 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RAM_37370 e208dae2e00a654f7ed4e0ed3aec9639 215 Pfam PF13417 Glutathione S-transferase, N-terminal domain 3 79 5.4E-17 T 13-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RAM_37370 e208dae2e00a654f7ed4e0ed3aec9639 215 Gene3D G3DSA:3.40.30.10 3 196 3.9E-60 T 13-10-2018 RAM_37370 e208dae2e00a654f7ed4e0ed3aec9639 215 SUPERFAMILY SSF47616 73 200 3.55E-11 T 13-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily RAM_43565 e7d94eff9e3a6431ebc2f17fd94b9507 626 Pfam PF07690 Major Facilitator Superfamily 211 557 8.6E-14 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_43565 e7d94eff9e3a6431ebc2f17fd94b9507 626 Gene3D G3DSA:1.20.1250.20 197 586 1.2E-17 T 13-10-2018 RAM_43565 e7d94eff9e3a6431ebc2f17fd94b9507 626 SUPERFAMILY SSF103473 205 591 1.02E-22 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_22875 6171bcdad03718422711fe48238277a8 491 Gene3D G3DSA:3.50.50.60 313 426 5.1E-7 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_22875 6171bcdad03718422711fe48238277a8 491 Gene3D G3DSA:3.50.50.60 1 283 1.8E-55 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_22875 6171bcdad03718422711fe48238277a8 491 Pfam PF00743 Flavin-binding monooxygenase-like 80 219 2.8E-13 T 13-10-2018 IPR020946 Flavin monooxygenase-like GO:0004499|GO:0050660|GO:0050661|GO:0055114 RAM_22875 6171bcdad03718422711fe48238277a8 491 SUPERFAMILY SSF51905 1 387 1.11E-54 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_22875 6171bcdad03718422711fe48238277a8 491 Pfam PF13450 NAD(P)-binding Rossmann-like domain 9 62 2.2E-7 T 13-10-2018 RAM_38785 3cb2ed0db5e11430c3ca592ade5380cb 808 Gene3D G3DSA:3.30.1360.120 415 687 1.9E-109 T 13-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RAM_38785 3cb2ed0db5e11430c3ca592ade5380cb 808 Pfam PF01266 FAD dependent oxidoreductase 5 362 2.4E-46 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RAM_38785 3cb2ed0db5e11430c3ca592ade5380cb 808 Gene3D G3DSA:3.50.50.60 6 381 1.1E-141 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_38785 3cb2ed0db5e11430c3ca592ade5380cb 808 SUPERFAMILY SSF101790 722 807 3.11E-22 T 13-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal RAM_38785 3cb2ed0db5e11430c3ca592ade5380cb 808 SUPERFAMILY SSF54373 214 325 8.24E-29 T 13-10-2018 RAM_38785 3cb2ed0db5e11430c3ca592ade5380cb 808 Gene3D G3DSA:2.40.30.110 718 795 2.4E-34 T 13-10-2018 RAM_38785 3cb2ed0db5e11430c3ca592ade5380cb 808 SUPERFAMILY SSF103025 415 713 4.55E-93 T 13-10-2018 RAM_38785 3cb2ed0db5e11430c3ca592ade5380cb 808 Pfam PF01571 Aminomethyltransferase folate-binding domain 424 698 3.6E-75 T 13-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain RAM_38785 3cb2ed0db5e11430c3ca592ade5380cb 808 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 704 795 1.2E-17 T 13-10-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RAM_38785 3cb2ed0db5e11430c3ca592ade5380cb 808 Gene3D G3DSA:3.30.9.10 80 325 1.1E-141 T 13-10-2018 RAM_38785 3cb2ed0db5e11430c3ca592ade5380cb 808 Gene3D G3DSA:3.30.70.1400 495 712 1.9E-109 T 13-10-2018 RAM_38785 3cb2ed0db5e11430c3ca592ade5380cb 808 SUPERFAMILY SSF51905 4 408 3.37E-61 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_38785 3cb2ed0db5e11430c3ca592ade5380cb 808 Pfam PF16350 FAD dependent oxidoreductase central domain 365 419 2.3E-16 T 13-10-2018 IPR032503 FAD dependent oxidoreductase, central domain RAM_16435 1341d84eaf7f582f330c32e343b4f668 388 Gene3D G3DSA:3.30.9.10 92 329 7.1E-88 T 13-10-2018 RAM_16435 1341d84eaf7f582f330c32e343b4f668 388 Pfam PF01266 FAD dependent oxidoreductase 5 366 3.7E-65 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RAM_16435 1341d84eaf7f582f330c32e343b4f668 388 Gene3D G3DSA:3.50.50.60 6 373 7.1E-88 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_16435 1341d84eaf7f582f330c32e343b4f668 388 SUPERFAMILY SSF51905 4 383 2.01E-51 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_16435 1341d84eaf7f582f330c32e343b4f668 388 SUPERFAMILY SSF54373 225 325 1.24E-11 T 13-10-2018 RAM_20595 bbd16e1b1b465902dd15a4ec49b4f89e 460 SUPERFAMILY SSF56059 167 358 1.66E-21 T 13-10-2018 RAM_20595 bbd16e1b1b465902dd15a4ec49b4f89e 460 Pfam PF02222 ATP-grasp domain 201 349 5.6E-6 T 13-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type RAM_20595 bbd16e1b1b465902dd15a4ec49b4f89e 460 Gene3D G3DSA:3.30.470.130 106 357 4.9E-15 T 13-10-2018 RAM_03845 e8247f881d573005bf67d8c9e84a8285 458 SUPERFAMILY SSF53448 51 349 4.98E-27 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_03845 e8247f881d573005bf67d8c9e84a8285 458 Pfam PF13641 Glycosyltransferase like family 2 50 302 8.8E-23 T 13-10-2018 RAM_03845 e8247f881d573005bf67d8c9e84a8285 458 Gene3D G3DSA:3.90.550.10 47 286 1.1E-22 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_30755 39d6a6f93648fb3c8299eeb6baab6cd5 486 SUPERFAMILY SSF52540 175 472 6.0E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_30755 39d6a6f93648fb3c8299eeb6baab6cd5 486 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 266 281 7.3E-7 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 RAM_30755 39d6a6f93648fb3c8299eeb6baab6cd5 486 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 217 237 7.3E-7 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 RAM_30755 39d6a6f93648fb3c8299eeb6baab6cd5 486 Gene3D G3DSA:3.40.50.300 213 384 1.5E-39 T 13-10-2018 RAM_30755 39d6a6f93648fb3c8299eeb6baab6cd5 486 SMART SM00382 213 453 0.71 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_30755 39d6a6f93648fb3c8299eeb6baab6cd5 486 SMART SM00382 39 175 0.16 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_30755 39d6a6f93648fb3c8299eeb6baab6cd5 486 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 41 468 1.4E-152 T 13-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 RAM_30755 39d6a6f93648fb3c8299eeb6baab6cd5 486 Gene3D G3DSA:3.40.50.300 38 199 3.7E-41 T 13-10-2018 RAM_30755 39d6a6f93648fb3c8299eeb6baab6cd5 486 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 390 468 1.3E-24 T 13-10-2018 IPR032859 GTPase Der, C-terminal KH-domain-like RAM_30755 39d6a6f93648fb3c8299eeb6baab6cd5 486 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 41 162 4.2E-22 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 RAM_30755 39d6a6f93648fb3c8299eeb6baab6cd5 486 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 215 375 2.3E-22 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 RAM_30755 39d6a6f93648fb3c8299eeb6baab6cd5 486 Hamap MF_00195 GTPase Der [der]. 40 471 34.596 T 13-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 RAM_30755 39d6a6f93648fb3c8299eeb6baab6cd5 486 Gene3D G3DSA:3.30.300.20 390 471 1.2E-24 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta RAM_30755 39d6a6f93648fb3c8299eeb6baab6cd5 486 SUPERFAMILY SSF52540 42 205 1.13E-40 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_30755 39d6a6f93648fb3c8299eeb6baab6cd5 486 PIRSF PIRSF006485 39 476 5.2E-157 T 13-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 RAM_30755 39d6a6f93648fb3c8299eeb6baab6cd5 486 Pfam PF01926 50S ribosome-binding GTPase 216 334 4.2E-20 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 RAM_30755 39d6a6f93648fb3c8299eeb6baab6cd5 486 Pfam PF01926 50S ribosome-binding GTPase 43 157 2.8E-24 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 RAM_40385 e9c93e416f33f1c57bf4647e0c194464 263 Gene3D G3DSA:3.40.50.720 1 250 1.9E-77 T 13-10-2018 RAM_40385 e9c93e416f33f1c57bf4647e0c194464 263 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 242 2.0E-58 T 13-10-2018 RAM_40385 e9c93e416f33f1c57bf4647e0c194464 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 186 1.2E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_40385 e9c93e416f33f1c57bf4647e0c194464 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 1.2E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_40385 e9c93e416f33f1c57bf4647e0c194464 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 75 86 1.2E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_40385 e9c93e416f33f1c57bf4647e0c194464 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 167 1.2E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_40385 e9c93e416f33f1c57bf4647e0c194464 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 122 138 1.2E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_40385 e9c93e416f33f1c57bf4647e0c194464 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 1.2E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_40385 e9c93e416f33f1c57bf4647e0c194464 263 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 135 163 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_40385 e9c93e416f33f1c57bf4647e0c194464 263 SUPERFAMILY SSF51735 8 242 3.01E-73 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_40385 e9c93e416f33f1c57bf4647e0c194464 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 128 136 6.5E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_40385 e9c93e416f33f1c57bf4647e0c194464 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 167 6.5E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_40385 e9c93e416f33f1c57bf4647e0c194464 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 75 86 6.5E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_20655 de7955acf1132242911e9619930cf070 218 SMART SM00448 1 111 4.4E-35 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_20655 de7955acf1132242911e9619930cf070 218 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 216 2.4E-20 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_20655 de7955acf1132242911e9619930cf070 218 Gene3D G3DSA:3.40.50.2300 1 120 5.0E-32 T 13-10-2018 RAM_20655 de7955acf1132242911e9619930cf070 218 SUPERFAMILY SSF52172 2 175 2.72E-33 T 13-10-2018 IPR011006 CheY-like superfamily RAM_20655 de7955acf1132242911e9619930cf070 218 Gene3D G3DSA:1.10.10.10 121 218 4.7E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_20655 de7955acf1132242911e9619930cf070 218 Pfam PF00072 Response regulator receiver domain 3 112 6.5E-22 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_20655 de7955acf1132242911e9619930cf070 218 SMART SM00862 144 216 7.1E-22 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_37720 bf05edca0a20fc592409c1a281bb642a 296 SMART SM00342 103 185 1.1E-21 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_37720 bf05edca0a20fc592409c1a281bb642a 296 Gene3D G3DSA:1.10.10.60 139 183 4.8E-7 T 13-10-2018 RAM_37720 bf05edca0a20fc592409c1a281bb642a 296 SUPERFAMILY SSF46689 101 137 1.92E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_37720 bf05edca0a20fc592409c1a281bb642a 296 Pfam PF12833 Helix-turn-helix domain 109 185 3.1E-19 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_37720 bf05edca0a20fc592409c1a281bb642a 296 Gene3D G3DSA:1.10.10.60 81 138 2.8E-15 T 13-10-2018 RAM_37720 bf05edca0a20fc592409c1a281bb642a 296 SUPERFAMILY SSF57884 7 92 1.96E-29 T 13-10-2018 IPR035451 Ada-like domain superfamily RAM_37720 bf05edca0a20fc592409c1a281bb642a 296 Gene3D G3DSA:3.30.160.70 184 272 6.1E-22 T 13-10-2018 RAM_37720 bf05edca0a20fc592409c1a281bb642a 296 SUPERFAMILY SSF53155 192 266 2.24E-12 T 13-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 RAM_37720 bf05edca0a20fc592409c1a281bb642a 296 Gene3D G3DSA:3.40.10.10 3 77 7.4E-30 T 13-10-2018 IPR035451 Ada-like domain superfamily RAM_37720 bf05edca0a20fc592409c1a281bb642a 296 Pfam PF02805 Metal binding domain of Ada 12 76 1.0E-28 T 13-10-2018 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 RAM_13385 39bcbf47ce051150ea176b9869447ff1 533 Pfam PF01425 Amidase 7 395 1.0E-75 T 13-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RAM_13385 39bcbf47ce051150ea176b9869447ff1 533 Gene3D G3DSA:3.90.1300.10 22 402 4.3E-129 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RAM_13385 39bcbf47ce051150ea176b9869447ff1 533 SUPERFAMILY SSF75304 2 403 2.49E-104 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RAM_13385 39bcbf47ce051150ea176b9869447ff1 533 Gene3D G3DSA:1.20.58.1700 256 329 4.3E-129 T 13-10-2018 RAM_13385 39bcbf47ce051150ea176b9869447ff1 533 Gene3D G3DSA:3.10.490.10 405 532 3.0E-49 T 13-10-2018 RAM_32130 03698203895a3a9c7e19b1dfd31fd55a 185 Gene3D G3DSA:1.20.1260.20 9 181 9.5E-9 T 13-10-2018 IPR038332 PPE superfamily RAM_32130 03698203895a3a9c7e19b1dfd31fd55a 185 Pfam PF00823 PPE family 17 134 1.2E-8 T 13-10-2018 IPR000030 PPE family RAM_32130 03698203895a3a9c7e19b1dfd31fd55a 185 SUPERFAMILY SSF140459 11 131 1.05E-9 T 13-10-2018 RAM_39015 28a4ccc93f36d5b2390a593a615acffa 146 Gene3D G3DSA:3.40.50.2300 2 146 7.3E-36 T 13-10-2018 RAM_39015 28a4ccc93f36d5b2390a593a615acffa 146 SMART SM00448 8 130 2.7E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_39015 28a4ccc93f36d5b2390a593a615acffa 146 SUPERFAMILY SSF52172 7 136 3.42E-32 T 13-10-2018 IPR011006 CheY-like superfamily RAM_39015 28a4ccc93f36d5b2390a593a615acffa 146 Pfam PF00072 Response regulator receiver domain 10 130 8.0E-20 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_35455 74074cb5a715eeef9b03340fd729aadc 745 Gene3D G3DSA:2.160.20.10 206 589 7.3E-33 T 13-10-2018 IPR012334 Pectin lyase fold RAM_35455 74074cb5a715eeef9b03340fd729aadc 745 Pfam PF12708 Pectate lyase superfamily protein 207 433 4.1E-14 T 13-10-2018 IPR024535 Pectate lyase superfamily protein RAM_35455 74074cb5a715eeef9b03340fd729aadc 745 Gene3D G3DSA:2.60.120.260 615 743 5.2E-24 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_35455 74074cb5a715eeef9b03340fd729aadc 745 SUPERFAMILY SSF51126 188 539 6.43E-36 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor RAM_35455 74074cb5a715eeef9b03340fd729aadc 745 Gene3D G3DSA:2.60.120.260 51 193 1.2E-8 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_35455 74074cb5a715eeef9b03340fd729aadc 745 SUPERFAMILY SSF49785 620 743 8.51E-22 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_35455 74074cb5a715eeef9b03340fd729aadc 745 Pfam PF00754 F5/8 type C domain 627 739 6.2E-11 T 13-10-2018 IPR000421 Coagulation factor 5/8 C-terminal domain RAM_35455 74074cb5a715eeef9b03340fd729aadc 745 SMART SM00710 379 401 230.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_35455 74074cb5a715eeef9b03340fd729aadc 745 SMART SM00710 524 546 2200.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_35455 74074cb5a715eeef9b03340fd729aadc 745 SMART SM00710 332 353 4500.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_35455 74074cb5a715eeef9b03340fd729aadc 745 SMART SM00710 499 521 1400.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_35455 74074cb5a715eeef9b03340fd729aadc 745 SMART SM00710 430 454 18.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_35455 74074cb5a715eeef9b03340fd729aadc 745 SMART SM00710 355 377 990.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_24550 c9d35688a9d50a964cb49b02af99da44 251 SMART SM00849 11 203 0.0062 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_24550 c9d35688a9d50a964cb49b02af99da44 251 SUPERFAMILY SSF56281 5 207 5.77E-30 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_24550 c9d35688a9d50a964cb49b02af99da44 251 Gene3D G3DSA:3.60.15.10 3 225 1.4E-48 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_24550 c9d35688a9d50a964cb49b02af99da44 251 Pfam PF12706 Beta-lactamase superfamily domain 23 204 8.9E-27 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_40460 4d02259395066e2bdeed12ad4ad28921 247 Pfam PF01177 Asp/Glu/Hydantoin racemase 60 222 9.1E-7 T 13-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RAM_40460 4d02259395066e2bdeed12ad4ad28921 247 PIRSF PIRSF015736 4 244 5.4E-55 T 13-10-2018 IPR026286 Maleate isomerase/Arylmalonate decarboxylase RAM_40460 4d02259395066e2bdeed12ad4ad28921 247 Gene3D G3DSA:3.40.50.12500 2 241 2.4E-56 T 13-10-2018 RAM_44935 08e19866418cbfa155edbe85c3ac3d11 551 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 25 522 2.4E-73 T 13-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 RAM_44935 08e19866418cbfa155edbe85c3ac3d11 551 Gene3D G3DSA:1.20.1720.10 26 265 1.1E-47 T 13-10-2018 RAM_44935 08e19866418cbfa155edbe85c3ac3d11 551 PRINTS PR01035 Tetracycline resistance protein signature 26 42 4.1E-5 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RAM_44935 08e19866418cbfa155edbe85c3ac3d11 551 PRINTS PR01035 Tetracycline resistance protein signature 149 171 4.1E-5 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RAM_44935 08e19866418cbfa155edbe85c3ac3d11 551 PRINTS PR01035 Tetracycline resistance protein signature 55 74 4.1E-5 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RAM_44935 08e19866418cbfa155edbe85c3ac3d11 551 SUPERFAMILY SSF103473 17 524 6.54E-61 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_44935 08e19866418cbfa155edbe85c3ac3d11 551 Pfam PF07690 Major Facilitator Superfamily 29 427 7.4E-49 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_37385 03c4b33e6b930bfbcf647afdb6a0651f 289 Pfam PF05681 Fumarate hydratase (Fumerase) 13 277 1.2E-65 T 13-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 RAM_37385 03c4b33e6b930bfbcf647afdb6a0651f 289 TIGRFAM TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type 21 278 1.4E-62 T 13-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 RAM_03780 94f653258c64d064d39ac4509f17bb55 371 Gene3D G3DSA:3.20.20.10 14 224 8.3E-131 T 13-10-2018 IPR029066 PLP-binding barrel RAM_03780 94f653258c64d064d39ac4509f17bb55 371 PRINTS PR00992 Alanine racemase signature 160 171 6.5E-64 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RAM_03780 94f653258c64d064d39ac4509f17bb55 371 PRINTS PR00992 Alanine racemase signature 272 287 6.5E-64 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RAM_03780 94f653258c64d064d39ac4509f17bb55 371 PRINTS PR00992 Alanine racemase signature 126 138 6.5E-64 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RAM_03780 94f653258c64d064d39ac4509f17bb55 371 PRINTS PR00992 Alanine racemase signature 348 361 6.5E-64 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RAM_03780 94f653258c64d064d39ac4509f17bb55 371 PRINTS PR00992 Alanine racemase signature 202 229 6.5E-64 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RAM_03780 94f653258c64d064d39ac4509f17bb55 371 PRINTS PR00992 Alanine racemase signature 293 310 6.5E-64 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RAM_03780 94f653258c64d064d39ac4509f17bb55 371 PRINTS PR00992 Alanine racemase signature 30 46 6.5E-64 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RAM_03780 94f653258c64d064d39ac4509f17bb55 371 PRINTS PR00992 Alanine racemase signature 255 270 6.5E-64 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RAM_03780 94f653258c64d064d39ac4509f17bb55 371 PRINTS PR00992 Alanine racemase signature 66 84 6.5E-64 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RAM_03780 94f653258c64d064d39ac4509f17bb55 371 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 35 45 - T 13-10-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RAM_03780 94f653258c64d064d39ac4509f17bb55 371 TIGRFAM TIGR00492 alr: alanine racemase 8 367 5.2E-96 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RAM_03780 94f653258c64d064d39ac4509f17bb55 371 SMART SM01005 239 367 2.2E-63 T 13-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RAM_03780 94f653258c64d064d39ac4509f17bb55 371 Pfam PF00842 Alanine racemase, C-terminal domain 239 366 2.0E-43 T 13-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RAM_03780 94f653258c64d064d39ac4509f17bb55 371 SUPERFAMILY SSF50621 232 368 2.56E-47 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 RAM_03780 94f653258c64d064d39ac4509f17bb55 371 Hamap MF_01201 Alanine racemase. 5 367 33.735 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RAM_03780 94f653258c64d064d39ac4509f17bb55 371 SUPERFAMILY SSF51419 12 240 1.13E-65 T 13-10-2018 IPR029066 PLP-binding barrel RAM_03780 94f653258c64d064d39ac4509f17bb55 371 Gene3D G3DSA:2.40.37.10 12 366 8.3E-131 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 RAM_03780 94f653258c64d064d39ac4509f17bb55 371 Pfam PF01168 Alanine racemase, N-terminal domain 12 229 7.3E-70 T 13-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RAM_19275 c16a61f24ebb3aa52f536fe3b3a412ad 108 ProSitePatterns PS01249 Hydrogenases expression/synthesis hypA family signature. 31 73 - T 13-10-2018 IPR020538 Hydrogenase nickel incorporation protein HypA/HybF, conserved site RAM_19275 c16a61f24ebb3aa52f536fe3b3a412ad 108 Pfam PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA 2 108 3.1E-29 T 13-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 RAM_19275 c16a61f24ebb3aa52f536fe3b3a412ad 108 Gene3D G3DSA:3.30.2320.50 2 105 4.9E-29 T 13-10-2018 RAM_19275 c16a61f24ebb3aa52f536fe3b3a412ad 108 Hamap MF_00213 Hydrogenase maturation factor HypA [hypA]. 1 108 18.856 T 13-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 RAM_19275 c16a61f24ebb3aa52f536fe3b3a412ad 108 Gene3D G3DSA:2.20.28.10 66 98 4.9E-29 T 13-10-2018 RAM_19275 c16a61f24ebb3aa52f536fe3b3a412ad 108 PIRSF PIRSF004761 1 108 1.5E-28 T 13-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 RAM_04780 e67b69570f459e057a1dd93dc34428bb 209 SUPERFAMILY SSF52972 2 195 4.71E-47 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like RAM_04780 e67b69570f459e057a1dd93dc34428bb 209 TIGRFAM TIGR00172 maf: septum formation protein Maf 2 193 4.1E-44 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 RAM_04780 e67b69570f459e057a1dd93dc34428bb 209 Hamap MF_00528 Septum formation protein Maf [maf]. 2 200 26.943 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 RAM_04780 e67b69570f459e057a1dd93dc34428bb 209 Gene3D G3DSA:3.90.950.10 2 202 6.3E-55 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like RAM_04780 e67b69570f459e057a1dd93dc34428bb 209 PIRSF PIRSF006305 1 202 8.9E-40 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 RAM_04780 e67b69570f459e057a1dd93dc34428bb 209 Pfam PF02545 Maf-like protein 3 195 1.3E-42 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 RAM_31150 6a8e5d45a5876319fd339f84fa4e2b99 470 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 14 416 3.9E-69 T 13-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 RAM_31150 6a8e5d45a5876319fd339f84fa4e2b99 470 Gene3D G3DSA:1.20.1250.20 258 462 9.8E-18 T 13-10-2018 RAM_31150 6a8e5d45a5876319fd339f84fa4e2b99 470 SUPERFAMILY SSF103473 4 453 7.72E-61 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_31150 6a8e5d45a5876319fd339f84fa4e2b99 470 Gene3D G3DSA:1.20.1720.10 13 241 9.4E-44 T 13-10-2018 RAM_31150 6a8e5d45a5876319fd339f84fa4e2b99 470 Pfam PF07690 Major Facilitator Superfamily 18 403 2.4E-50 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_37800 0cb917b5aa07f5a78f48e0a4084221e9 228 Gene3D G3DSA:3.40.710.30 1 209 1.8E-52 T 13-10-2018 RAM_37800 0cb917b5aa07f5a78f48e0a4084221e9 228 SUPERFAMILY SSF56601 2 175 5.7E-26 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_37800 0cb917b5aa07f5a78f48e0a4084221e9 228 Pfam PF00144 Beta-lactamase 1 178 4.4E-23 T 13-10-2018 IPR001466 Beta-lactamase-related RAM_10760 61df478ebe61d3a13d484a08a9e2200e 151 SUPERFAMILY SSF53041 10 129 1.12E-11 T 13-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 RAM_10760 61df478ebe61d3a13d484a08a9e2200e 151 SMART SM00857 10 147 4.1E-5 T 13-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 RAM_10760 61df478ebe61d3a13d484a08a9e2200e 151 Gene3D G3DSA:3.40.50.1390 6 147 3.6E-14 T 13-10-2018 RAM_10760 61df478ebe61d3a13d484a08a9e2200e 151 Pfam PF00239 Resolvase, N terminal domain 10 130 4.5E-12 T 13-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 RAM_38420 6edcac4611d4c648f47f4876a9a462cd 899 Pfam PF00196 Bacterial regulatory proteins, luxR family 839 891 1.1E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_38420 6edcac4611d4c648f47f4876a9a462cd 899 Gene3D G3DSA:1.25.40.10 527 837 2.0E-10 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_38420 6edcac4611d4c648f47f4876a9a462cd 899 SUPERFAMILY SSF46894 834 894 4.42E-17 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_38420 6edcac4611d4c648f47f4876a9a462cd 899 Gene3D G3DSA:1.10.10.10 838 898 6.1E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_38420 6edcac4611d4c648f47f4876a9a462cd 899 SUPERFAMILY SSF52540 5 219 2.86E-8 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_38420 6edcac4611d4c648f47f4876a9a462cd 899 Pfam PF13191 AAA ATPase domain 3 159 8.5E-17 T 13-10-2018 RAM_38420 6edcac4611d4c648f47f4876a9a462cd 899 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 870 882 2.2E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_38420 6edcac4611d4c648f47f4876a9a462cd 899 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 840 854 2.2E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_38420 6edcac4611d4c648f47f4876a9a462cd 899 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 854 870 2.2E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_38420 6edcac4611d4c648f47f4876a9a462cd 899 ProSitePatterns PS00622 LuxR-type HTH domain signature. 854 881 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_38420 6edcac4611d4c648f47f4876a9a462cd 899 SMART SM00421 837 894 4.5E-19 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_46115 b9e1a5e531d4075365173ebe6ad70baa 308 SMART SM00458 178 306 1.4E-28 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_46115 b9e1a5e531d4075365173ebe6ad70baa 308 Gene3D G3DSA:2.60.40.1180 84 173 1.9E-25 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta RAM_46115 b9e1a5e531d4075365173ebe6ad70baa 308 Pfam PF00652 Ricin-type beta-trefoil lectin domain 181 303 6.0E-30 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_46115 b9e1a5e531d4075365173ebe6ad70baa 308 Pfam PF16499 Alpha galactosidase A 14 82 4.8E-14 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_46115 b9e1a5e531d4075365173ebe6ad70baa 308 SUPERFAMILY SSF51445 11 83 7.9E-16 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_46115 b9e1a5e531d4075365173ebe6ad70baa 308 SUPERFAMILY SSF50370 176 305 2.42E-41 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_46115 b9e1a5e531d4075365173ebe6ad70baa 308 SUPERFAMILY SSF51011 84 171 1.26E-15 T 13-10-2018 RAM_46115 b9e1a5e531d4075365173ebe6ad70baa 308 PRINTS PR00740 Glycosyl hydrolase family 27 signature 38 59 1.5E-6 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_46115 b9e1a5e531d4075365173ebe6ad70baa 308 PRINTS PR00740 Glycosyl hydrolase family 27 signature 17 36 1.5E-6 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_46115 b9e1a5e531d4075365173ebe6ad70baa 308 Gene3D G3DSA:3.20.20.70 1 83 4.8E-26 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_46115 b9e1a5e531d4075365173ebe6ad70baa 308 Gene3D G3DSA:2.80.10.50 181 305 7.8E-43 T 13-10-2018 RAM_31460 43a80d71f32cb059cc8cefc6d3219920 913 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 23 191 2.8E-54 T 13-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 RAM_31460 43a80d71f32cb059cc8cefc6d3219920 913 SUPERFAMILY SSF53098 329 503 1.14E-30 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily RAM_31460 43a80d71f32cb059cc8cefc6d3219920 913 Gene3D G3DSA:1.10.150.20 693 836 4.2E-101 T 13-10-2018 RAM_31460 43a80d71f32cb059cc8cefc6d3219920 913 SMART SM00475 20 282 1.2E-132 T 13-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 RAM_31460 43a80d71f32cb059cc8cefc6d3219920 913 SUPERFAMILY SSF56672 508 911 1.22E-137 T 13-10-2018 RAM_31460 43a80d71f32cb059cc8cefc6d3219920 913 SMART SM00474 323 502 1.0E-13 T 13-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 RAM_31460 43a80d71f32cb059cc8cefc6d3219920 913 SMART SM00482 669 876 3.6E-113 T 13-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAM_31460 43a80d71f32cb059cc8cefc6d3219920 913 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 193 286 1.6E-26 T 13-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 RAM_31460 43a80d71f32cb059cc8cefc6d3219920 913 SUPERFAMILY SSF88723 20 191 2.24E-54 T 13-10-2018 IPR029060 PIN-like domain superfamily RAM_31460 43a80d71f32cb059cc8cefc6d3219920 913 TIGRFAM TIGR00593 pola: DNA polymerase I 24 911 6.1E-304 T 13-10-2018 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAM_31460 43a80d71f32cb059cc8cefc6d3219920 913 PRINTS PR00868 DNA-polymerase family A (pol I) signature 638 660 2.3E-73 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAM_31460 43a80d71f32cb059cc8cefc6d3219920 913 PRINTS PR00868 DNA-polymerase family A (pol I) signature 775 786 2.3E-73 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAM_31460 43a80d71f32cb059cc8cefc6d3219920 913 PRINTS PR00868 DNA-polymerase family A (pol I) signature 714 727 2.3E-73 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAM_31460 43a80d71f32cb059cc8cefc6d3219920 913 PRINTS PR00868 DNA-polymerase family A (pol I) signature 661 676 2.3E-73 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAM_31460 43a80d71f32cb059cc8cefc6d3219920 913 PRINTS PR00868 DNA-polymerase family A (pol I) signature 829 845 2.3E-73 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAM_31460 43a80d71f32cb059cc8cefc6d3219920 913 PRINTS PR00868 DNA-polymerase family A (pol I) signature 797 808 2.3E-73 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAM_31460 43a80d71f32cb059cc8cefc6d3219920 913 PRINTS PR00868 DNA-polymerase family A (pol I) signature 859 872 2.3E-73 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAM_31460 43a80d71f32cb059cc8cefc6d3219920 913 PRINTS PR00868 DNA-polymerase family A (pol I) signature 684 707 2.3E-73 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAM_31460 43a80d71f32cb059cc8cefc6d3219920 913 PRINTS PR00868 DNA-polymerase family A (pol I) signature 738 763 2.3E-73 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAM_31460 43a80d71f32cb059cc8cefc6d3219920 913 SMART SM00279 194 229 5.7E-14 T 13-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 RAM_31460 43a80d71f32cb059cc8cefc6d3219920 913 ProSitePatterns PS00447 DNA polymerase family A signature. 738 757 - T 13-10-2018 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAM_31460 43a80d71f32cb059cc8cefc6d3219920 913 Gene3D G3DSA:3.30.420.10 336 525 1.9E-33 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RAM_31460 43a80d71f32cb059cc8cefc6d3219920 913 Pfam PF00476 DNA polymerase family A 535 910 3.0E-141 T 13-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAM_31460 43a80d71f32cb059cc8cefc6d3219920 913 Gene3D G3DSA:3.40.50.1010 24 298 2.2E-95 T 13-10-2018 RAM_31460 43a80d71f32cb059cc8cefc6d3219920 913 Gene3D G3DSA:3.30.70.370 647 908 4.2E-101 T 13-10-2018 RAM_31460 43a80d71f32cb059cc8cefc6d3219920 913 Gene3D G3DSA:1.20.1060.10 527 641 1.6E-31 T 13-10-2018 RAM_31460 43a80d71f32cb059cc8cefc6d3219920 913 SUPERFAMILY SSF47807 192 305 6.43E-31 T 13-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily RAM_31460 43a80d71f32cb059cc8cefc6d3219920 913 Pfam PF01612 3'-5' exonuclease 357 454 1.1E-6 T 13-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 RAM_31460 43a80d71f32cb059cc8cefc6d3219920 913 Gene3D G3DSA:1.10.150.20 195 267 2.2E-95 T 13-10-2018 RAM_15885 d1521c42ead231439149ac42aa0170a7 206 SUPERFAMILY SSF52266 6 198 2.33E-29 T 13-10-2018 RAM_15885 d1521c42ead231439149ac42aa0170a7 206 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 13 186 3.0E-23 T 13-10-2018 IPR013830 SGNH hydrolase-type esterase domain RAM_15885 d1521c42ead231439149ac42aa0170a7 206 Gene3D G3DSA:3.40.50.1110 10 199 7.6E-24 T 13-10-2018 IPR036514 SGNH hydrolase superfamily RAM_35545 90a087fe9a41f2ee68c744cf8472bba0 481 Gene3D G3DSA:3.40.190.10 14 253 1.4E-33 T 13-10-2018 RAM_35545 90a087fe9a41f2ee68c744cf8472bba0 481 SUPERFAMILY SSF53850 31 473 6.15E-59 T 13-10-2018 RAM_35545 90a087fe9a41f2ee68c744cf8472bba0 481 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 68 349 2.0E-35 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain RAM_35545 90a087fe9a41f2ee68c744cf8472bba0 481 Gene3D G3DSA:3.10.105.10 258 452 7.9E-18 T 13-10-2018 RAM_35545 90a087fe9a41f2ee68c744cf8472bba0 481 PIRSF PIRSF002741 18 366 6.0E-33 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RAM_35545 90a087fe9a41f2ee68c744cf8472bba0 481 PIRSF PIRSF002741 397 473 0.17 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RAM_29530 829eb2fc4c86ec6742e9ef60d067d04e 726 Gene3D G3DSA:2.60.420.10 616 696 1.0E-16 T 13-10-2018 RAM_29530 829eb2fc4c86ec6742e9ef60d067d04e 726 Pfam PF17389 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain 257 519 1.8E-12 T 13-10-2018 IPR035396 Alpha-L-rhamnosidase, six-hairpin glycosidase domain RAM_29530 829eb2fc4c86ec6742e9ef60d067d04e 726 Gene3D G3DSA:1.50.10.10 264 615 2.2E-59 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 RAM_29530 829eb2fc4c86ec6742e9ef60d067d04e 726 SUPERFAMILY SSF48208 257 687 3.0E-42 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_29530 829eb2fc4c86ec6742e9ef60d067d04e 726 Pfam PF17390 Bacterial alpha-L-rhamnosidase C-terminal domain 621 693 6.0E-15 T 13-10-2018 IPR035398 Alpha-L-rhamnosidase C-terminal domain RAM_08240 5e54af5b50e48f67d7b981d02c8d652b 481 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 302 320 2.6E-44 T 13-10-2018 RAM_08240 5e54af5b50e48f67d7b981d02c8d652b 481 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 7 29 2.6E-44 T 13-10-2018 RAM_08240 5e54af5b50e48f67d7b981d02c8d652b 481 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 150 165 2.6E-44 T 13-10-2018 RAM_08240 5e54af5b50e48f67d7b981d02c8d652b 481 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 320 336 2.6E-44 T 13-10-2018 RAM_08240 5e54af5b50e48f67d7b981d02c8d652b 481 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 284 300 2.6E-44 T 13-10-2018 RAM_08240 5e54af5b50e48f67d7b981d02c8d652b 481 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 269 284 2.6E-44 T 13-10-2018 RAM_08240 5e54af5b50e48f67d7b981d02c8d652b 481 Pfam PF01494 FAD binding domain 5 334 5.2E-81 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_08240 5e54af5b50e48f67d7b981d02c8d652b 481 Gene3D G3DSA:3.50.50.60 7 332 6.4E-101 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_08240 5e54af5b50e48f67d7b981d02c8d652b 481 SUPERFAMILY SSF51905 5 356 3.6E-56 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_08240 5e54af5b50e48f67d7b981d02c8d652b 481 Gene3D G3DSA:3.30.70.2450 179 258 6.4E-101 T 13-10-2018 RAM_08240 5e54af5b50e48f67d7b981d02c8d652b 481 Gene3D G3DSA:3.40.30.120 373 476 8.5E-21 T 13-10-2018 RAM_44885 a96f4d61502ba68db08c553116275937 799 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 207 338 4.2E-45 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RAM_44885 a96f4d61502ba68db08c553116275937 799 Pfam PF01434 Peptidase family M41 403 609 2.5E-77 T 13-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 RAM_44885 a96f4d61502ba68db08c553116275937 799 Gene3D G3DSA:1.20.58.760 421 622 3.0E-69 T 13-10-2018 RAM_44885 a96f4d61502ba68db08c553116275937 799 Gene3D G3DSA:3.40.50.300 158 339 1.1E-68 T 13-10-2018 RAM_44885 a96f4d61502ba68db08c553116275937 799 Gene3D G3DSA:1.10.8.60 341 418 1.8E-23 T 13-10-2018 RAM_44885 a96f4d61502ba68db08c553116275937 799 ProSitePatterns PS00674 AAA-protein family signature. 310 328 - T 13-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 RAM_44885 a96f4d61502ba68db08c553116275937 799 SMART SM00382 203 342 3.1E-25 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_44885 a96f4d61502ba68db08c553116275937 799 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 120 610 4.0E-225 T 13-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 RAM_44885 a96f4d61502ba68db08c553116275937 799 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 3 646 35.977 T 13-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 RAM_44885 a96f4d61502ba68db08c553116275937 799 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 211 230 9.5E-5 T 13-10-2018 RAM_44885 a96f4d61502ba68db08c553116275937 799 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 501 520 9.5E-5 T 13-10-2018 RAM_44885 a96f4d61502ba68db08c553116275937 799 SUPERFAMILY SSF140990 421 614 1.03E-67 T 13-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 RAM_44885 a96f4d61502ba68db08c553116275937 799 SUPERFAMILY SSF52540 163 410 1.17E-69 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_31140 55cd469485aa83bd4823dba60c30d024 448 SUPERFAMILY SSF118215 19 408 5.23E-105 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 RAM_31140 55cd469485aa83bd4823dba60c30d024 448 PRINTS PR00173 Glutamate-aspartate symporter signature 151 173 2.3E-27 T 13-10-2018 RAM_31140 55cd469485aa83bd4823dba60c30d024 448 PRINTS PR00173 Glutamate-aspartate symporter signature 198 217 2.3E-27 T 13-10-2018 RAM_31140 55cd469485aa83bd4823dba60c30d024 448 PRINTS PR00173 Glutamate-aspartate symporter signature 299 325 2.3E-27 T 13-10-2018 RAM_31140 55cd469485aa83bd4823dba60c30d024 448 PRINTS PR00173 Glutamate-aspartate symporter signature 17 37 2.3E-27 T 13-10-2018 RAM_31140 55cd469485aa83bd4823dba60c30d024 448 PRINTS PR00173 Glutamate-aspartate symporter signature 84 109 2.3E-27 T 13-10-2018 RAM_31140 55cd469485aa83bd4823dba60c30d024 448 PRINTS PR00173 Glutamate-aspartate symporter signature 334 353 2.3E-27 T 13-10-2018 RAM_31140 55cd469485aa83bd4823dba60c30d024 448 Gene3D G3DSA:1.10.3860.10 11 422 3.6E-110 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 RAM_31140 55cd469485aa83bd4823dba60c30d024 448 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 46 61 - T 13-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site RAM_31140 55cd469485aa83bd4823dba60c30d024 448 Pfam PF00375 Sodium:dicarboxylate symporter family 19 407 2.7E-98 T 13-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 RAM_27350 5395c42437a854e89d4b6a45dba67819 334 Gene3D G3DSA:3.40.50.720 9 315 5.3E-92 T 13-10-2018 RAM_27350 5395c42437a854e89d4b6a45dba67819 334 SUPERFAMILY SSF51735 108 295 2.96E-43 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_27350 5395c42437a854e89d4b6a45dba67819 334 SUPERFAMILY SSF52283 37 136 3.61E-12 T 13-10-2018 RAM_27350 5395c42437a854e89d4b6a45dba67819 334 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 148 294 4.1E-43 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 RAM_27350 5395c42437a854e89d4b6a45dba67819 334 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 40 325 1.9E-9 T 13-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 RAM_27350 5395c42437a854e89d4b6a45dba67819 334 Gene3D G3DSA:3.40.50.720 107 293 5.3E-92 T 13-10-2018 RAM_27350 5395c42437a854e89d4b6a45dba67819 334 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 234 250 - T 13-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site RAM_22130 3e7a3545180d7142187e8c92e1c1a103 410 Gene3D G3DSA:3.40.190.10 63 369 4.7E-84 T 13-10-2018 RAM_22130 3e7a3545180d7142187e8c92e1c1a103 410 Gene3D G3DSA:3.40.190.10 150 401 4.7E-84 T 13-10-2018 RAM_22130 3e7a3545180d7142187e8c92e1c1a103 410 SUPERFAMILY SSF53850 46 407 1.14E-74 T 13-10-2018 RAM_22130 3e7a3545180d7142187e8c92e1c1a103 410 Pfam PF13416 Bacterial extracellular solute-binding protein 58 356 8.4E-45 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein RAM_15035 9a7ffcf9a8634c2125ba09c5b7050bc4 237 Pfam PF01168 Alanine racemase, N-terminal domain 12 232 2.7E-19 T 13-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RAM_15035 9a7ffcf9a8634c2125ba09c5b7050bc4 237 ProSitePatterns PS01211 Uncharacterized protein family UPF0001 signature. 79 93 - T 13-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 RAM_15035 9a7ffcf9a8634c2125ba09c5b7050bc4 237 Gene3D G3DSA:3.20.20.10 1 235 2.7E-74 T 13-10-2018 IPR029066 PLP-binding barrel RAM_15035 9a7ffcf9a8634c2125ba09c5b7050bc4 237 PIRSF PIRSF004848 1 236 3.5E-63 T 13-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 RAM_15035 9a7ffcf9a8634c2125ba09c5b7050bc4 237 Hamap MF_02087 Pyridoxal phosphate homeostasis protein. 10 231 26.776 T 13-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 RAM_15035 9a7ffcf9a8634c2125ba09c5b7050bc4 237 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 9 232 5.4E-42 T 13-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 RAM_15035 9a7ffcf9a8634c2125ba09c5b7050bc4 237 SUPERFAMILY SSF51419 4 230 2.56E-63 T 13-10-2018 IPR029066 PLP-binding barrel RAM_35715 0db377ff6a162de6797c934a734a7c2e 266 Gene3D G3DSA:3.40.710.10 4 266 1.0E-67 T 13-10-2018 RAM_35715 0db377ff6a162de6797c934a734a7c2e 266 Pfam PF13354 Beta-lactamase enzyme family 22 235 1.4E-51 T 13-10-2018 RAM_35715 0db377ff6a162de6797c934a734a7c2e 266 SUPERFAMILY SSF56601 10 262 7.09E-43 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_29050 2f0dec0eb4318e33bd474ae6d953bd48 75 Gene3D G3DSA:3.30.530.20 1 75 7.1E-8 T 13-10-2018 IPR023393 START-like domain superfamily RAM_29050 2f0dec0eb4318e33bd474ae6d953bd48 75 SUPERFAMILY SSF55961 5 69 5.77E-6 T 13-10-2018 RAM_19910 f77a9e6b975c43a7da492d81ae60d4c2 850 SUPERFAMILY SSF46894 774 849 7.48E-17 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_19910 f77a9e6b975c43a7da492d81ae60d4c2 850 Pfam PF00196 Bacterial regulatory proteins, luxR family 790 844 5.5E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_19910 f77a9e6b975c43a7da492d81ae60d4c2 850 SMART SM00421 787 844 1.7E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_19910 f77a9e6b975c43a7da492d81ae60d4c2 850 Pfam PF02399 Origin of replication binding protein 39 62 1.5E-4 T 13-10-2018 IPR003450 Replication origin-binding protein GO:0003688|GO:0005524|GO:0006260 RAM_19910 f77a9e6b975c43a7da492d81ae60d4c2 850 SUPERFAMILY SSF52540 20 225 7.18E-7 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_19910 f77a9e6b975c43a7da492d81ae60d4c2 850 Gene3D G3DSA:1.25.40.10 466 777 4.9E-15 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_19910 f77a9e6b975c43a7da492d81ae60d4c2 850 Gene3D G3DSA:1.10.10.10 785 849 7.2E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_19910 f77a9e6b975c43a7da492d81ae60d4c2 850 Gene3D G3DSA:3.40.50.300 15 177 8.8E-7 T 13-10-2018 RAM_41575 68d88ce565593f2cc9531cd593cc1fbd 167 Gene3D G3DSA:1.10.287.180 8 79 3.5E-22 T 13-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 RAM_41575 68d88ce565593f2cc9531cd593cc1fbd 167 SUPERFAMILY SSF54534 85 159 4.44E-12 T 13-10-2018 RAM_41575 68d88ce565593f2cc9531cd593cc1fbd 167 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 86 159 1.2E-13 T 13-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 RAM_41575 68d88ce565593f2cc9531cd593cc1fbd 167 SUPERFAMILY SSF46557 10 81 1.57E-21 T 13-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 RAM_41575 68d88ce565593f2cc9531cd593cc1fbd 167 Hamap MF_00105 Transcription elongation factor GreA [greA]. 8 161 27.361 T 13-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 RAM_41575 68d88ce565593f2cc9531cd593cc1fbd 167 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 23 53 - T 13-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 RAM_41575 68d88ce565593f2cc9531cd593cc1fbd 167 Gene3D G3DSA:3.10.50.30 84 166 1.8E-11 T 13-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 RAM_41575 68d88ce565593f2cc9531cd593cc1fbd 167 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 125 141 - T 13-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 RAM_41575 68d88ce565593f2cc9531cd593cc1fbd 167 Pfam PF03449 Transcription elongation factor, N-terminal 11 79 7.2E-24 T 13-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 RAM_41575 68d88ce565593f2cc9531cd593cc1fbd 167 PIRSF PIRSF006092 4 163 1.1E-32 T 13-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 RAM_44735 e499b5a00c1cd17926acefa25cec892d 338 SUPERFAMILY SSF56219 122 337 1.96E-25 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily RAM_44735 e499b5a00c1cd17926acefa25cec892d 338 Gene3D G3DSA:3.60.10.10 121 338 9.6E-27 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily RAM_44735 e499b5a00c1cd17926acefa25cec892d 338 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 137 328 7.9E-10 T 13-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase RAM_35890 c490fe7a5c5625a4c793e563870e59dd 399 SUPERFAMILY SSF103473 17 396 1.26E-31 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_35890 c490fe7a5c5625a4c793e563870e59dd 399 Gene3D G3DSA:1.20.1250.20 15 390 3.5E-28 T 13-10-2018 RAM_35890 c490fe7a5c5625a4c793e563870e59dd 399 Pfam PF07690 Major Facilitator Superfamily 20 297 2.4E-14 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_23400 7cdfee25e026dd47ecf8aa2d0c7d76d7 280 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 30 53 7.9E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_23400 7cdfee25e026dd47ecf8aa2d0c7d76d7 280 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 9 22 7.9E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_23400 7cdfee25e026dd47ecf8aa2d0c7d76d7 280 SUPERFAMILY SSF46689 3 76 7.7E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_23400 7cdfee25e026dd47ecf8aa2d0c7d76d7 280 Gene3D G3DSA:1.10.10.60 235 280 4.3E-6 T 13-10-2018 RAM_23400 7cdfee25e026dd47ecf8aa2d0c7d76d7 280 SUPERFAMILY SSF46689 235 278 3.88E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_23400 7cdfee25e026dd47ecf8aa2d0c7d76d7 280 Pfam PF02796 Helix-turn-helix domain of resolvase 235 276 1.8E-9 T 13-10-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 RAM_23400 7cdfee25e026dd47ecf8aa2d0c7d76d7 280 Gene3D G3DSA:1.10.357.10 2 174 6.3E-24 T 13-10-2018 RAM_23400 7cdfee25e026dd47ecf8aa2d0c7d76d7 280 Pfam PF00440 Bacterial regulatory proteins, tetR family 9 55 5.2E-16 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_21395 d74e633b7b327785c2cbd04080971642 187 SUPERFAMILY SSF46689 13 72 2.94E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_21395 d74e633b7b327785c2cbd04080971642 187 ProSitePatterns PS01081 TetR-type HTH domain signature. 33 64 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RAM_21395 d74e633b7b327785c2cbd04080971642 187 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 64 3.4E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_21395 d74e633b7b327785c2cbd04080971642 187 Gene3D G3DSA:1.10.357.10 2 185 5.7E-31 T 13-10-2018 RAM_21395 d74e633b7b327785c2cbd04080971642 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 42 65 4.6E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_21395 d74e633b7b327785c2cbd04080971642 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 21 34 4.6E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_21395 d74e633b7b327785c2cbd04080971642 187 SUPERFAMILY SSF48498 80 181 9.04E-7 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_35680 f6b2ec3a57b4fe6c3208f570db8a5c6c 397 PIRSF PIRSF000429 1 396 2.4E-54 T 13-10-2018 IPR002155 Thiolase GO:0016747 RAM_35680 f6b2ec3a57b4fe6c3208f570db8a5c6c 397 Gene3D G3DSA:3.40.47.10 1 395 2.0E-86 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_35680 f6b2ec3a57b4fe6c3208f570db8a5c6c 397 Pfam PF02803 Thiolase, C-terminal domain 282 368 1.4E-8 T 13-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 RAM_35680 f6b2ec3a57b4fe6c3208f570db8a5c6c 397 SUPERFAMILY SSF53901 3 239 1.6E-31 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_35680 f6b2ec3a57b4fe6c3208f570db8a5c6c 397 SUPERFAMILY SSF53901 264 385 9.83E-22 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_35680 f6b2ec3a57b4fe6c3208f570db8a5c6c 397 Pfam PF00108 Thiolase, N-terminal domain 3 128 9.4E-14 T 13-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 RAM_10950 21857f8a06176a4e003c1e05d9df3728 463 Gene3D G3DSA:1.10.40.30 408 459 3.4E-20 T 13-10-2018 RAM_10950 21857f8a06176a4e003c1e05d9df3728 463 Gene3D G3DSA:1.20.200.10 140 407 1.1E-112 T 13-10-2018 RAM_10950 21857f8a06176a4e003c1e05d9df3728 463 Pfam PF00206 Lyase 12 342 7.5E-100 T 13-10-2018 IPR022761 Fumarate lyase, N-terminal RAM_10950 21857f8a06176a4e003c1e05d9df3728 463 ProSitePatterns PS00163 Fumarate lyases signature. 317 326 - T 13-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 RAM_10950 21857f8a06176a4e003c1e05d9df3728 463 Pfam PF10415 Fumarase C C-terminus 408 460 1.3E-19 T 13-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RAM_10950 21857f8a06176a4e003c1e05d9df3728 463 Gene3D G3DSA:1.10.275.10 1 139 1.6E-58 T 13-10-2018 IPR024083 Fumarase/histidase, N-terminal RAM_10950 21857f8a06176a4e003c1e05d9df3728 463 SUPERFAMILY SSF48557 3 459 2.04E-151 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 RAM_10950 21857f8a06176a4e003c1e05d9df3728 463 PRINTS PR00149 Fumarate lyase superfamily signature 135 153 7.8E-28 T 13-10-2018 IPR000362 Fumarate lyase family RAM_10950 21857f8a06176a4e003c1e05d9df3728 463 PRINTS PR00149 Fumarate lyase superfamily signature 180 198 7.8E-28 T 13-10-2018 IPR000362 Fumarate lyase family RAM_10950 21857f8a06176a4e003c1e05d9df3728 463 PRINTS PR00149 Fumarate lyase superfamily signature 271 298 7.8E-28 T 13-10-2018 IPR000362 Fumarate lyase family RAM_10950 21857f8a06176a4e003c1e05d9df3728 463 PRINTS PR00149 Fumarate lyase superfamily signature 317 333 7.8E-28 T 13-10-2018 IPR000362 Fumarate lyase family RAM_10950 21857f8a06176a4e003c1e05d9df3728 463 TIGRFAM TIGR00839 aspA: aspartate ammonia-lyase 4 461 1.3E-208 T 13-10-2018 IPR004708 Aspartate ammonia-lyase GO:0006531|GO:0008797 KEGG: 00250+4.3.1.1 RAM_44405 e3729e7109b179530b0a6155fb4e3c7b 848 Gene3D G3DSA:1.25.40.10 61 420 3.9E-15 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_44405 e3729e7109b179530b0a6155fb4e3c7b 848 Pfam PF12770 CHAT domain 609 834 3.5E-31 T 13-10-2018 IPR024983 CHAT domain RAM_44405 e3729e7109b179530b0a6155fb4e3c7b 848 SUPERFAMILY SSF48452 101 285 8.79E-13 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_44405 e3729e7109b179530b0a6155fb4e3c7b 848 SMART SM00028 219 252 290.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_44405 e3729e7109b179530b0a6155fb4e3c7b 848 SMART SM00028 136 169 18.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_44405 e3729e7109b179530b0a6155fb4e3c7b 848 SMART SM00028 180 213 220.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_44405 e3729e7109b179530b0a6155fb4e3c7b 848 SMART SM00028 96 129 13.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_46135 22188efc47adf73c7096c4ebe95c1e66 291 Gene3D G3DSA:3.40.1190.20 4 291 1.8E-60 T 13-10-2018 IPR029056 Ribokinase-like RAM_46135 22188efc47adf73c7096c4ebe95c1e66 291 Pfam PF00294 pfkB family carbohydrate kinase 5 276 2.7E-39 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB RAM_46135 22188efc47adf73c7096c4ebe95c1e66 291 SUPERFAMILY SSF53613 3 276 4.83E-56 T 13-10-2018 IPR029056 Ribokinase-like RAM_35600 a84791fa16bd343a239e4f64813a4ac1 270 Gene3D G3DSA:3.20.20.150 2 269 4.6E-64 T 13-10-2018 RAM_35600 a84791fa16bd343a239e4f64813a4ac1 270 Pfam PF01261 Xylose isomerase-like TIM barrel 33 220 5.4E-30 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain RAM_35600 a84791fa16bd343a239e4f64813a4ac1 270 SUPERFAMILY SSF51658 3 262 2.49E-54 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily RAM_04390 649773be62137f8d895cd72479bdac35 425 Gene3D G3DSA:3.40.1030.10 79 320 7.3E-133 T 13-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 RAM_04390 649773be62137f8d895cd72479bdac35 425 Gene3D G3DSA:1.20.970.10 5 70 9.4E-24 T 13-10-2018 RAM_04390 649773be62137f8d895cd72479bdac35 425 Pfam PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain 336 408 3.2E-20 T 13-10-2018 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 RAM_04390 649773be62137f8d895cd72479bdac35 425 Pfam PF02885 Glycosyl transferase family, helical bundle domain 7 69 9.1E-20 T 13-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 RAM_04390 649773be62137f8d895cd72479bdac35 425 TIGRFAM TIGR02644 Y_phosphoryl: pyrimidine-nucleoside phosphorylase 7 408 3.3E-162 T 13-10-2018 IPR018090 Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic GO:0006213|GO:0016154 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181|Reactome: R-HSA-73614|Reactome: R-HSA-73621 RAM_04390 649773be62137f8d895cd72479bdac35 425 Gene3D G3DSA:3.90.1170.30 321 409 7.3E-133 T 13-10-2018 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 RAM_04390 649773be62137f8d895cd72479bdac35 425 SUPERFAMILY SSF52418 75 316 9.42E-82 T 13-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 RAM_04390 649773be62137f8d895cd72479bdac35 425 SMART SM00941 335 409 4.3E-29 T 13-10-2018 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 RAM_04390 649773be62137f8d895cd72479bdac35 425 PIRSF PIRSF000478 3 424 9.2E-149 T 13-10-2018 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase GO:0004645|GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 RAM_04390 649773be62137f8d895cd72479bdac35 425 SUPERFAMILY SSF47648 5 72 6.15E-21 T 13-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 RAM_04390 649773be62137f8d895cd72479bdac35 425 SUPERFAMILY SSF54680 323 423 1.83E-25 T 13-10-2018 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 RAM_04390 649773be62137f8d895cd72479bdac35 425 Pfam PF00591 Glycosyl transferase family, a/b domain 79 286 3.4E-35 T 13-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 RAM_04390 649773be62137f8d895cd72479bdac35 425 ProSitePatterns PS00647 Thymidine and pyrimidine-nucleoside phosphorylases signature. 112 127 - T 13-10-2018 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 RAM_10490 5d5b28ae836fef1e623ee787d84238c3 282 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 4.7E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_10490 5d5b28ae836fef1e623ee787d84238c3 282 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 4.7E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_10490 5d5b28ae836fef1e623ee787d84238c3 282 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 4.7E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_10490 5d5b28ae836fef1e623ee787d84238c3 282 Gene3D G3DSA:3.40.190.10 161 256 4.3E-25 T 13-10-2018 RAM_10490 5d5b28ae836fef1e623ee787d84238c3 282 Gene3D G3DSA:1.10.10.10 1 84 1.8E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_10490 5d5b28ae836fef1e623ee787d84238c3 282 Gene3D G3DSA:3.40.190.10 91 275 4.3E-25 T 13-10-2018 RAM_10490 5d5b28ae836fef1e623ee787d84238c3 282 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 1.6E-20 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_10490 5d5b28ae836fef1e623ee787d84238c3 282 Pfam PF03466 LysR substrate binding domain 88 279 1.7E-25 T 13-10-2018 IPR005119 LysR, substrate-binding RAM_10490 5d5b28ae836fef1e623ee787d84238c3 282 SUPERFAMILY SSF46785 1 84 7.14E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_10490 5d5b28ae836fef1e623ee787d84238c3 282 SUPERFAMILY SSF53850 89 281 1.36E-23 T 13-10-2018 RAM_31815 28163896685cb203d447012ab3a9d375 256 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 115 143 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_31815 28163896685cb203d447012ab3a9d375 256 SUPERFAMILY SSF51735 1 191 6.67E-40 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_31815 28163896685cb203d447012ab3a9d375 256 Gene3D G3DSA:3.40.50.720 1 220 8.5E-56 T 13-10-2018 RAM_31815 28163896685cb203d447012ab3a9d375 256 Pfam PF01370 NAD dependent epimerase/dehydratase family 1 157 3.5E-18 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 RAM_45300 1664fd3f18efbb06ffb095db5d425908 199 Gene3D G3DSA:3.40.30.10 71 197 5.2E-20 T 13-10-2018 RAM_45300 1664fd3f18efbb06ffb095db5d425908 199 ProSitePatterns PS00194 Thioredoxin family active site. 88 106 - T 13-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 RAM_45300 1664fd3f18efbb06ffb095db5d425908 199 SUPERFAMILY SSF52833 72 180 1.34E-18 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RAM_45300 1664fd3f18efbb06ffb095db5d425908 199 Pfam PF08534 Redoxin 56 177 2.6E-10 T 13-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 RAM_43025 53882c28d782b166f07f1b15ea97e172 611 SUPERFAMILY SSF51445 72 413 3.84E-64 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_43025 53882c28d782b166f07f1b15ea97e172 611 Gene3D G3DSA:2.80.10.50 482 573 6.3E-28 T 13-10-2018 RAM_43025 53882c28d782b166f07f1b15ea97e172 611 Gene3D G3DSA:2.60.40.1180 48 473 3.6E-131 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta RAM_43025 53882c28d782b166f07f1b15ea97e172 611 Pfam PF17189 Glycosyl hydrolase family 30 beta sandwich domain 412 471 5.1E-13 T 13-10-2018 IPR033452 Glycosyl hydrolase family 30, beta sandwich domain Reactome: R-HSA-1660662|Reactome: R-HSA-390471 RAM_43025 53882c28d782b166f07f1b15ea97e172 611 Pfam PF00652 Ricin-type beta-trefoil lectin domain 487 607 2.5E-27 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_43025 53882c28d782b166f07f1b15ea97e172 611 Gene3D G3DSA:2.80.10.50 574 610 3.5E-11 T 13-10-2018 RAM_43025 53882c28d782b166f07f1b15ea97e172 611 SUPERFAMILY SSF51011 409 473 6.55E-7 T 13-10-2018 RAM_43025 53882c28d782b166f07f1b15ea97e172 611 Gene3D G3DSA:3.20.20.80 70 413 3.6E-131 T 13-10-2018 RAM_43025 53882c28d782b166f07f1b15ea97e172 611 Pfam PF02055 Glycosyl hydrolase family 30 TIM-barrel domain 74 373 2.4E-34 T 13-10-2018 IPR033453 Glycosyl hydrolase family 30, TIM-barrel domain Reactome: R-HSA-1660662|Reactome: R-HSA-390471 RAM_43025 53882c28d782b166f07f1b15ea97e172 611 SMART SM00458 486 610 7.9E-27 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_43025 53882c28d782b166f07f1b15ea97e172 611 SUPERFAMILY SSF50370 489 608 1.15E-36 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_30605 49f13b068d46d108f380ee7cf85143dc 122 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 116 2.1E-5 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RAM_30605 49f13b068d46d108f380ee7cf85143dc 122 SUPERFAMILY SSF54593 5 120 2.06E-14 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_30605 49f13b068d46d108f380ee7cf85143dc 122 Gene3D G3DSA:3.10.180.10 5 121 2.8E-21 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_04365 d58e29b858b3443516150ce519753f1a 380 SUPERFAMILY SSF53822 86 292 4.63E-7 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_04365 d58e29b858b3443516150ce519753f1a 380 Pfam PF02608 ABC transporter substrate-binding protein PnrA-like 76 347 2.9E-48 T 13-10-2018 IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 RAM_04365 d58e29b858b3443516150ce519753f1a 380 Gene3D G3DSA:3.40.50.2300 73 340 4.0E-88 T 13-10-2018 RAM_04365 d58e29b858b3443516150ce519753f1a 380 Gene3D G3DSA:3.40.50.2300 177 372 4.0E-88 T 13-10-2018 RAM_08345 a3c0fc827b70264b83720657b09f4bf0 152 Gene3D G3DSA:3.10.450.50 11 148 1.9E-62 T 13-10-2018 RAM_08345 a3c0fc827b70264b83720657b09f4bf0 152 SUPERFAMILY SSF54427 2 144 5.93E-68 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_08345 a3c0fc827b70264b83720657b09f4bf0 152 Pfam PF07080 Protein of unknown function (DUF1348) 8 136 1.1E-61 T 13-10-2018 IPR009783 Protein of unknown function DUF1348 RAM_10675 dfac14a20d8819a06f5a7df1785476fa 81 Gene3D G3DSA:1.10.1200.10 2 81 1.2E-24 T 13-10-2018 IPR036736 ACP-like superfamily RAM_10675 dfac14a20d8819a06f5a7df1785476fa 81 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 5 79 1.9E-20 T 13-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 RAM_10675 dfac14a20d8819a06f5a7df1785476fa 81 SUPERFAMILY SSF47336 4 79 4.97E-21 T 13-10-2018 IPR036736 ACP-like superfamily RAM_10675 dfac14a20d8819a06f5a7df1785476fa 81 Pfam PF00550 Phosphopantetheine attachment site 11 76 3.7E-16 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_10675 dfac14a20d8819a06f5a7df1785476fa 81 Hamap MF_01217 Acyl carrier protein [acpP]. 6 80 17.386 T 13-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 RAM_10675 dfac14a20d8819a06f5a7df1785476fa 81 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 37 76 2.0E-12 T 13-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 RAM_31965 4324b28bc7bc1c814ef01e9bc0d59b57 1437 SUPERFAMILY SSF52777 42 220 1.45E-48 T 13-10-2018 RAM_31965 4324b28bc7bc1c814ef01e9bc0d59b57 1437 Pfam PF00501 AMP-binding enzyme 699 790 1.1E-8 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_31965 4324b28bc7bc1c814ef01e9bc0d59b57 1437 Pfam PF00501 AMP-binding enzyme 502 591 9.6E-14 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_31965 4324b28bc7bc1c814ef01e9bc0d59b57 1437 Gene3D G3DSA:3.30.559.10 41 414 1.8E-134 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_31965 4324b28bc7bc1c814ef01e9bc0d59b57 1437 Pfam PF00668 Condensation domain 39 476 1.5E-93 T 13-10-2018 IPR001242 Condensation domain RAM_31965 4324b28bc7bc1c814ef01e9bc0d59b57 1437 SUPERFAMILY SSF53335 922 1036 3.31E-15 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_31965 4324b28bc7bc1c814ef01e9bc0d59b57 1437 Gene3D G3DSA:3.40.50.1820 1315 1425 2.8E-26 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_31965 4324b28bc7bc1c814ef01e9bc0d59b57 1437 Pfam PF00550 Phosphopantetheine attachment site 1328 1391 1.6E-15 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_31965 4324b28bc7bc1c814ef01e9bc0d59b57 1437 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1350 1365 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_31965 4324b28bc7bc1c814ef01e9bc0d59b57 1437 SUPERFAMILY SSF56801 499 1339 1.01E-46 T 13-10-2018 RAM_31965 4324b28bc7bc1c814ef01e9bc0d59b57 1437 SMART SM00823 Phosphopantetheine attachment site 1326 1395 1.6E-5 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_31965 4324b28bc7bc1c814ef01e9bc0d59b57 1437 Gene3D G3DSA:3.40.50.12780 484 815 9.0E-35 T 13-10-2018 RAM_31965 4324b28bc7bc1c814ef01e9bc0d59b57 1437 Pfam PF13649 Methyltransferase domain 929 1027 1.5E-6 T 13-10-2018 RAM_31965 4324b28bc7bc1c814ef01e9bc0d59b57 1437 Gene3D G3DSA:3.40.50.150 906 1116 3.3E-22 T 13-10-2018 RAM_31965 4324b28bc7bc1c814ef01e9bc0d59b57 1437 SUPERFAMILY SSF47336 1320 1392 3.01E-19 T 13-10-2018 IPR036736 ACP-like superfamily RAM_31965 4324b28bc7bc1c814ef01e9bc0d59b57 1437 SUPERFAMILY SSF52777 227 473 1.33E-56 T 13-10-2018 RAM_31965 4324b28bc7bc1c814ef01e9bc0d59b57 1437 Gene3D G3DSA:3.30.559.30 224 471 1.8E-134 T 13-10-2018 RAM_30575 e46b80ff5ad7f406e2f6414cd28c53a1 435 Pfam PF04434 SWIM zinc finger 68 86 2.4E-5 T 13-10-2018 IPR007527 Zinc finger, SWIM-type GO:0008270 RAM_10915 3d98100540674700c4aa0a3a2bacad87 138 SUPERFAMILY SSF51182 29 126 4.62E-14 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RAM_10915 3d98100540674700c4aa0a3a2bacad87 138 Pfam PF07883 Cupin domain 50 115 3.4E-8 T 13-10-2018 IPR013096 Cupin 2, conserved barrel RAM_10915 3d98100540674700c4aa0a3a2bacad87 138 Gene3D G3DSA:2.60.120.10 19 131 5.2E-13 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_05150 5fa700ed4728c8871f7ff5b217d9c4fb 358 Pfam PF00534 Glycosyl transferases group 1 184 336 2.0E-26 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 RAM_05150 5fa700ed4728c8871f7ff5b217d9c4fb 358 Gene3D G3DSA:3.40.50.2000 171 337 1.6E-54 T 13-10-2018 RAM_05150 5fa700ed4728c8871f7ff5b217d9c4fb 358 SUPERFAMILY SSF53756 7 355 3.61E-64 T 13-10-2018 RAM_05150 5fa700ed4728c8871f7ff5b217d9c4fb 358 Gene3D G3DSA:3.40.50.2000 13 349 1.6E-54 T 13-10-2018 RAM_05150 5fa700ed4728c8871f7ff5b217d9c4fb 358 Pfam PF13439 Glycosyltransferase Family 4 17 172 5.1E-10 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 RAM_29960 07412edf6b27dcd05d28072287ca0b81 250 SUPERFAMILY SSF46785 2 51 2.35E-11 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_29960 07412edf6b27dcd05d28072287ca0b81 250 Gene3D G3DSA:1.10.10.10 2 50 1.6E-5 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_29960 07412edf6b27dcd05d28072287ca0b81 250 Pfam PF08220 DeoR-like helix-turn-helix domain 2 50 2.9E-14 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RAM_29960 07412edf6b27dcd05d28072287ca0b81 250 SMART SM00420 2 50 2.2E-13 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RAM_29960 07412edf6b27dcd05d28072287ca0b81 250 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 30 48 1.3E-9 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RAM_29960 07412edf6b27dcd05d28072287ca0b81 250 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 16 30 1.3E-9 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RAM_29960 07412edf6b27dcd05d28072287ca0b81 250 SMART SM01134 65 225 2.2E-66 T 13-10-2018 RAM_29960 07412edf6b27dcd05d28072287ca0b81 250 SUPERFAMILY SSF100950 68 224 2.51E-27 T 13-10-2018 IPR037171 NagB/RpiA transferase-like RAM_29960 07412edf6b27dcd05d28072287ca0b81 250 Pfam PF00455 DeoR C terminal sensor domain 68 223 2.2E-44 T 13-10-2018 IPR014036 DeoR C-terminal sensor domain RAM_03615 f19b16a7d3b5b62b55dd9ae8789707cd 356 SUPERFAMILY SSF47789 246 317 1.7E-23 T 13-10-2018 RAM_03615 f19b16a7d3b5b62b55dd9ae8789707cd 356 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 242 301 9.7E-26 T 13-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAM_03615 f19b16a7d3b5b62b55dd9ae8789707cd 356 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 19 310 3.3E-115 T 13-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAM_03615 f19b16a7d3b5b62b55dd9ae8789707cd 356 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 24 218 3.2E-20 T 13-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAM_03615 f19b16a7d3b5b62b55dd9ae8789707cd 356 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 250 320 2.0E-23 T 13-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAM_03615 f19b16a7d3b5b62b55dd9ae8789707cd 356 Gene3D G3DSA:1.10.150.20 237 311 4.4E-28 T 13-10-2018 RAM_03615 f19b16a7d3b5b62b55dd9ae8789707cd 356 SUPERFAMILY SSF56553 48 169 1.18E-42 T 13-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAM_03615 f19b16a7d3b5b62b55dd9ae8789707cd 356 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 57 149 1.9E-25 T 13-10-2018 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAM_03615 f19b16a7d3b5b62b55dd9ae8789707cd 356 Gene3D G3DSA:3.30.1360.10 12 216 2.1E-84 T 13-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAM_03615 f19b16a7d3b5b62b55dd9ae8789707cd 356 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 1 311 34.716 T 13-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAM_03615 f19b16a7d3b5b62b55dd9ae8789707cd 356 SUPERFAMILY SSF55257 13 220 2.16E-26 T 13-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAM_03615 f19b16a7d3b5b62b55dd9ae8789707cd 356 SMART SM00662 18 225 1.6E-97 T 13-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAM_03615 f19b16a7d3b5b62b55dd9ae8789707cd 356 Gene3D G3DSA:2.170.120.12 48 168 2.1E-84 T 13-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAM_21490 28643c52509ab813f67ca424360ad3f9 295 PIRSF PIRSF015689 1 295 4.3E-129 T 13-10-2018 IPR003361 Acetaldehyde dehydrogenase GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 RAM_21490 28643c52509ab813f67ca424360ad3f9 295 Hamap MF_01657 Acetaldehyde dehydrogenase [mhpF]. 1 295 124.174 T 13-10-2018 IPR003361 Acetaldehyde dehydrogenase GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 RAM_21490 28643c52509ab813f67ca424360ad3f9 295 Pfam PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation 121 266 1.1E-62 T 13-10-2018 IPR015426 Acetaldehyde dehydrogenase, C-terminal GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 RAM_21490 28643c52509ab813f67ca424360ad3f9 295 SUPERFAMILY SSF55347 121 266 2.62E-59 T 13-10-2018 RAM_21490 28643c52509ab813f67ca424360ad3f9 295 TIGRFAM TIGR03215 ac_ald_DH_ac: acetaldehyde dehydrogenase (acetylating) 2 289 7.4E-128 T 13-10-2018 IPR003361 Acetaldehyde dehydrogenase GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 RAM_21490 28643c52509ab813f67ca424360ad3f9 295 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 2 107 9.4E-10 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 RAM_21490 28643c52509ab813f67ca424360ad3f9 295 Gene3D G3DSA:3.30.360.10 121 266 5.3E-121 T 13-10-2018 RAM_21490 28643c52509ab813f67ca424360ad3f9 295 SUPERFAMILY SSF51735 3 145 6.57E-19 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_21490 28643c52509ab813f67ca424360ad3f9 295 Gene3D G3DSA:3.40.50.720 2 284 5.3E-121 T 13-10-2018 RAM_21490 28643c52509ab813f67ca424360ad3f9 295 SMART SM00859 1 113 9.4E-4 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 RAM_41475 df7b515c03b9ae66c5dc2d1049baf42c 1015 Gene3D G3DSA:2.30.40.10 579 638 1.2E-9 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_41475 df7b515c03b9ae66c5dc2d1049baf42c 1015 Gene3D G3DSA:2.120.10.30 437 576 5.8E-12 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RAM_41475 df7b515c03b9ae66c5dc2d1049baf42c 1015 SUPERFAMILY SSF69304 311 567 1.7E-38 T 13-10-2018 RAM_41475 df7b515c03b9ae66c5dc2d1049baf42c 1015 Gene3D G3DSA:2.120.10.30 10 121 5.3E-27 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RAM_41475 df7b515c03b9ae66c5dc2d1049baf42c 1015 SUPERFAMILY SSF51338 573 966 1.48E-10 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_41475 df7b515c03b9ae66c5dc2d1049baf42c 1015 Gene3D G3DSA:2.120.10.30 287 430 9.5E-28 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RAM_41475 df7b515c03b9ae66c5dc2d1049baf42c 1015 Gene3D G3DSA:2.120.10.30 122 279 8.9E-23 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RAM_41475 df7b515c03b9ae66c5dc2d1049baf42c 1015 Pfam PF07676 WD40-like Beta Propeller Repeat 71 106 7.2E-10 T 13-10-2018 IPR011659 WD40-like Beta Propeller RAM_41475 df7b515c03b9ae66c5dc2d1049baf42c 1015 Pfam PF07676 WD40-like Beta Propeller Repeat 349 375 3.7E-4 T 13-10-2018 IPR011659 WD40-like Beta Propeller RAM_41475 df7b515c03b9ae66c5dc2d1049baf42c 1015 Pfam PF07676 WD40-like Beta Propeller Repeat 115 148 9.6E-10 T 13-10-2018 IPR011659 WD40-like Beta Propeller RAM_41475 df7b515c03b9ae66c5dc2d1049baf42c 1015 Pfam PF07676 WD40-like Beta Propeller Repeat 488 507 8.8E-4 T 13-10-2018 IPR011659 WD40-like Beta Propeller RAM_41475 df7b515c03b9ae66c5dc2d1049baf42c 1015 Pfam PF07676 WD40-like Beta Propeller Repeat 161 183 9.8E-4 T 13-10-2018 IPR011659 WD40-like Beta Propeller RAM_41475 df7b515c03b9ae66c5dc2d1049baf42c 1015 SUPERFAMILY SSF51556 632 931 2.27E-44 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_41475 df7b515c03b9ae66c5dc2d1049baf42c 1015 Gene3D G3DSA:3.20.20.140 639 929 2.4E-42 T 13-10-2018 RAM_41475 df7b515c03b9ae66c5dc2d1049baf42c 1015 SUPERFAMILY SSF69304 38 220 1.29E-35 T 13-10-2018 RAM_41475 df7b515c03b9ae66c5dc2d1049baf42c 1015 Pfam PF01979 Amidohydrolase family 630 966 8.4E-20 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RAM_07625 63a8d7f744317a34facad8daf865c694 255 PIRSF PIRSF039085 2 255 6.0E-116 T 13-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 RAM_07625 63a8d7f744317a34facad8daf865c694 255 Pfam PF00005 ABC transporter 23 179 1.2E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_07625 63a8d7f744317a34facad8daf865c694 255 SUPERFAMILY SSF52540 5 249 2.85E-77 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_07625 63a8d7f744317a34facad8daf865c694 255 SMART SM00382 30 227 4.1E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_07625 63a8d7f744317a34facad8daf865c694 255 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_07625 63a8d7f744317a34facad8daf865c694 255 Gene3D G3DSA:3.40.50.300 2 254 4.5E-76 T 13-10-2018 RAM_09525 f635880184fe487fc247a5e16a4e8b06 191 SUPERFAMILY SSF48498 94 188 1.53E-6 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_09525 f635880184fe487fc247a5e16a4e8b06 191 Gene3D G3DSA:1.10.357.10 4 190 1.7E-41 T 13-10-2018 RAM_09525 f635880184fe487fc247a5e16a4e8b06 191 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 62 4.2E-12 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_09525 f635880184fe487fc247a5e16a4e8b06 191 SUPERFAMILY SSF46689 12 81 2.03E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_25250 8d001fc94ac3d2315420de2167a3fed0 140 SUPERFAMILY SSF50475 31 122 3.31E-6 T 13-10-2018 RAM_25250 8d001fc94ac3d2315420de2167a3fed0 140 Gene3D G3DSA:2.30.110.10 5 137 5.5E-39 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_25250 8d001fc94ac3d2315420de2167a3fed0 140 TIGRFAM TIGR00026 hi_GC_TIGR00026: deazaflavin-dependent oxidoreductase, nitroreductase family 27 136 2.0E-27 T 13-10-2018 IPR004378 F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 RAM_25250 8d001fc94ac3d2315420de2167a3fed0 140 Pfam PF04075 F420H(2)-dependent quinone reductase 16 136 1.0E-28 T 13-10-2018 IPR004378 F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 RAM_01635 22a7b7cbf6c59c6a6881b852c8396f5b 180 SUPERFAMILY SSF109854 10 175 3.05E-42 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_01635 22a7b7cbf6c59c6a6881b852c8396f5b 180 Pfam PF04978 Protein of unknown function (DUF664) 31 176 8.7E-42 T 13-10-2018 IPR007061 Protein of unknown function DUF664 RAM_01635 22a7b7cbf6c59c6a6881b852c8396f5b 180 Gene3D G3DSA:1.20.120.450 13 179 8.4E-36 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_28960 6fe767e53d89b48d557588c10ac4365e 517 SUPERFAMILY SSF103473 11 501 5.62E-67 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_28960 6fe767e53d89b48d557588c10ac4365e 517 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 22 498 3.2E-80 T 13-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 RAM_28960 6fe767e53d89b48d557588c10ac4365e 517 Pfam PF07690 Major Facilitator Superfamily 27 419 1.8E-58 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_28960 6fe767e53d89b48d557588c10ac4365e 517 Gene3D G3DSA:1.20.1720.10 22 232 1.8E-50 T 13-10-2018 RAM_28960 6fe767e53d89b48d557588c10ac4365e 517 PRINTS PR01036 Tetracycline resistance protein TetB signature 410 429 1.9E-6 T 13-10-2018 RAM_28960 6fe767e53d89b48d557588c10ac4365e 517 PRINTS PR01036 Tetracycline resistance protein TetB signature 25 49 1.9E-6 T 13-10-2018 RAM_28960 6fe767e53d89b48d557588c10ac4365e 517 PRINTS PR01036 Tetracycline resistance protein TetB signature 115 135 1.9E-6 T 13-10-2018 RAM_28960 6fe767e53d89b48d557588c10ac4365e 517 PRINTS PR01036 Tetracycline resistance protein TetB signature 145 169 1.9E-6 T 13-10-2018 RAM_28960 6fe767e53d89b48d557588c10ac4365e 517 PRINTS PR01036 Tetracycline resistance protein TetB signature 210 228 1.9E-6 T 13-10-2018 RAM_16855 ea36938e31094ac702f87928cc7541cb 496 PRINTS PR00738 Glycosyl hydrolase family 20 signature 416 432 1.7E-35 T 13-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RAM_16855 ea36938e31094ac702f87928cc7541cb 496 PRINTS PR00738 Glycosyl hydrolase family 20 signature 434 451 1.7E-35 T 13-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RAM_16855 ea36938e31094ac702f87928cc7541cb 496 PRINTS PR00738 Glycosyl hydrolase family 20 signature 200 217 1.7E-35 T 13-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RAM_16855 ea36938e31094ac702f87928cc7541cb 496 PRINTS PR00738 Glycosyl hydrolase family 20 signature 129 150 1.7E-35 T 13-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RAM_16855 ea36938e31094ac702f87928cc7541cb 496 PRINTS PR00738 Glycosyl hydrolase family 20 signature 71 91 1.7E-35 T 13-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RAM_16855 ea36938e31094ac702f87928cc7541cb 496 PRINTS PR00738 Glycosyl hydrolase family 20 signature 270 283 1.7E-35 T 13-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RAM_16855 ea36938e31094ac702f87928cc7541cb 496 SUPERFAMILY SSF55545 2 105 1.96E-15 T 13-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 RAM_16855 ea36938e31094ac702f87928cc7541cb 496 Gene3D G3DSA:3.20.20.80 105 451 5.2E-118 T 13-10-2018 RAM_16855 ea36938e31094ac702f87928cc7541cb 496 Pfam PF00728 Glycosyl hydrolase family 20, catalytic domain 108 452 7.4E-100 T 13-10-2018 IPR015883 Glycoside hydrolase family 20, catalytic domain GO:0004553|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 RAM_16855 ea36938e31094ac702f87928cc7541cb 496 Pfam PF02838 Glycosyl hydrolase family 20, domain 2 49 103 3.8E-9 T 13-10-2018 IPR015882 Beta-hexosaminidase, bacterial type, N-terminal RAM_16855 ea36938e31094ac702f87928cc7541cb 496 SUPERFAMILY SSF51445 108 464 1.14E-105 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_16855 ea36938e31094ac702f87928cc7541cb 496 Gene3D G3DSA:3.30.379.10 1 102 7.1E-14 T 13-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 RAM_11480 78e7a4d62b20553bd652b3167fcd3be5 237 Gene3D G3DSA:3.60.15.10 1 237 8.1E-63 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_11480 78e7a4d62b20553bd652b3167fcd3be5 237 Pfam PF12706 Beta-lactamase superfamily domain 27 206 1.2E-21 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_11480 78e7a4d62b20553bd652b3167fcd3be5 237 SUPERFAMILY SSF56281 1 236 9.17E-46 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_39375 9c6172dcd9a4141869aabebae2f57f74 231 Gene3D G3DSA:3.40.50.720 1 229 9.3E-50 T 13-10-2018 RAM_39375 9c6172dcd9a4141869aabebae2f57f74 231 SUPERFAMILY SSF51735 4 227 1.31E-48 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_39375 9c6172dcd9a4141869aabebae2f57f74 231 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 227 1.4E-37 T 13-10-2018 RAM_39375 9c6172dcd9a4141869aabebae2f57f74 231 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 113 129 1.3E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_39375 9c6172dcd9a4141869aabebae2f57f74 231 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 194 214 1.3E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_39375 9c6172dcd9a4141869aabebae2f57f74 231 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 68 79 1.3E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_39375 9c6172dcd9a4141869aabebae2f57f74 231 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 175 1.3E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_39375 9c6172dcd9a4141869aabebae2f57f74 231 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.3E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_39375 9c6172dcd9a4141869aabebae2f57f74 231 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 139 158 1.3E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15265 115692326532977fc38d10c089f867fa 324 Gene3D G3DSA:3.20.20.140 2 321 1.2E-83 T 13-10-2018 RAM_15265 115692326532977fc38d10c089f867fa 324 SUPERFAMILY SSF51556 5 317 5.45E-61 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_15265 115692326532977fc38d10c089f867fa 324 TIGRFAM TIGR01430 aden_deam: adenosine deaminase 7 313 1.7E-73 T 13-10-2018 IPR006330 Adenosine/adenine deaminase GO:0019239 Reactome: R-HSA-74217 RAM_15265 115692326532977fc38d10c089f867fa 324 Pfam PF00962 Adenosine/AMP deaminase 7 311 6.7E-58 T 13-10-2018 IPR001365 Adenosine/AMP deaminase domain GO:0019239 Reactome: R-HSA-74217 RAM_02480 337984e85018f866786bab1198f34437 290 Pfam PF01370 NAD dependent epimerase/dehydratase family 2 177 3.4E-22 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 RAM_02480 337984e85018f866786bab1198f34437 290 Gene3D G3DSA:3.40.50.720 1 289 3.8E-48 T 13-10-2018 RAM_02480 337984e85018f866786bab1198f34437 290 SUPERFAMILY SSF51735 2 288 4.89E-50 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_42350 3c9db7d1a9c9937d3c006cd0a83eaff1 304 Pfam PF08544 GHMP kinases C terminal 196 268 1.0E-8 T 13-10-2018 IPR013750 GHMP kinase, C-terminal domain RAM_42350 3c9db7d1a9c9937d3c006cd0a83eaff1 304 Gene3D G3DSA:3.30.230.10 1 152 6.4E-57 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RAM_42350 3c9db7d1a9c9937d3c006cd0a83eaff1 304 SUPERFAMILY SSF54211 1 150 1.29E-37 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RAM_42350 3c9db7d1a9c9937d3c006cd0a83eaff1 304 SUPERFAMILY SSF55060 157 276 8.35E-23 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily RAM_42350 3c9db7d1a9c9937d3c006cd0a83eaff1 304 Hamap MF_00061 Putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 1 281 27.904 T 13-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 RAM_42350 3c9db7d1a9c9937d3c006cd0a83eaff1 304 Gene3D G3DSA:3.30.70.890 153 294 6.5E-45 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily RAM_42350 3c9db7d1a9c9937d3c006cd0a83eaff1 304 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 1 263 7.3E-47 T 13-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 RAM_42350 3c9db7d1a9c9937d3c006cd0a83eaff1 304 PIRSF PIRSF010376 1 289 2.4E-75 T 13-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 RAM_42350 3c9db7d1a9c9937d3c006cd0a83eaff1 304 Pfam PF00288 GHMP kinases N terminal domain 79 137 9.3E-10 T 13-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 RAM_23410 45bcebc1300544f3ea1d3d9951f962c0 323 Gene3D G3DSA:1.10.260.40 1 56 9.8E-23 T 13-10-2018 RAM_23410 45bcebc1300544f3ea1d3d9951f962c0 323 Pfam PF13377 Periplasmic binding protein-like domain 164 322 3.3E-31 T 13-10-2018 RAM_23410 45bcebc1300544f3ea1d3d9951f962c0 323 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 2 12 1.7E-5 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_23410 45bcebc1300544f3ea1d3d9951f962c0 323 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 12 22 1.7E-5 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_23410 45bcebc1300544f3ea1d3d9951f962c0 323 SUPERFAMILY SSF47413 1 58 5.2E-17 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_23410 45bcebc1300544f3ea1d3d9951f962c0 323 Gene3D G3DSA:3.40.50.2300 61 302 1.3E-70 T 13-10-2018 RAM_23410 45bcebc1300544f3ea1d3d9951f962c0 323 SMART SM00354 1 70 5.8E-27 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_23410 45bcebc1300544f3ea1d3d9951f962c0 323 SUPERFAMILY SSF53822 60 322 8.95E-59 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_23410 45bcebc1300544f3ea1d3d9951f962c0 323 Gene3D G3DSA:3.40.50.2300 155 283 1.3E-70 T 13-10-2018 RAM_23410 45bcebc1300544f3ea1d3d9951f962c0 323 Pfam PF00356 Bacterial regulatory proteins, lacI family 2 47 1.7E-17 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_23410 45bcebc1300544f3ea1d3d9951f962c0 323 ProSitePatterns PS00356 LacI-type HTH domain signature. 3 21 - T 13-10-2018 RAM_42030 9ba727000df283bfd4f4a3b4046250c0 240 Pfam PF00293 NUDIX domain 24 148 4.8E-13 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RAM_42030 9ba727000df283bfd4f4a3b4046250c0 240 SUPERFAMILY SSF46785 163 234 2.99E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_42030 9ba727000df283bfd4f4a3b4046250c0 240 Gene3D G3DSA:1.10.10.10 158 230 9.9E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_42030 9ba727000df283bfd4f4a3b4046250c0 240 SUPERFAMILY SSF55811 13 159 2.17E-26 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RAM_42030 9ba727000df283bfd4f4a3b4046250c0 240 Gene3D G3DSA:3.90.79.10 18 157 4.8E-38 T 13-10-2018 RAM_22555 1f714a97d84e9fa746c1e8834f95abee 412 Gene3D G3DSA:3.40.190.10 24 358 2.3E-118 T 13-10-2018 RAM_22555 1f714a97d84e9fa746c1e8834f95abee 412 Pfam PF01547 Bacterial extracellular solute-binding protein 38 319 7.3E-25 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein RAM_22555 1f714a97d84e9fa746c1e8834f95abee 412 Gene3D G3DSA:3.40.190.10 134 403 2.3E-118 T 13-10-2018 RAM_22555 1f714a97d84e9fa746c1e8834f95abee 412 SUPERFAMILY SSF53850 21 409 1.14E-52 T 13-10-2018 RAM_01005 12dd87732a49ab06bfe4867db7e74574 286 SUPERFAMILY SSF47413 12 67 1.24E-10 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_01005 12dd87732a49ab06bfe4867db7e74574 286 Pfam PF01381 Helix-turn-helix 18 67 2.6E-8 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_01005 12dd87732a49ab06bfe4867db7e74574 286 SMART SM00530 17 72 5.9E-7 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_01005 12dd87732a49ab06bfe4867db7e74574 286 Gene3D G3DSA:1.10.260.40 10 71 2.4E-11 T 13-10-2018 RAM_45095 c22a0c32735b2e4e96dd215f4128ae5d 703 Gene3D G3DSA:3.40.50.300 477 668 2.4E-25 T 13-10-2018 RAM_45095 c22a0c32735b2e4e96dd215f4128ae5d 703 Pfam PF05977 Transmembrane secretion effector 28 419 2.6E-16 T 13-10-2018 IPR010290 Transmembrane secretion effector RAM_45095 c22a0c32735b2e4e96dd215f4128ae5d 703 SUPERFAMILY SSF103473 33 457 1.96E-35 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_45095 c22a0c32735b2e4e96dd215f4128ae5d 703 Gene3D G3DSA:1.20.1250.20 27 457 6.7E-30 T 13-10-2018 RAM_45095 c22a0c32735b2e4e96dd215f4128ae5d 703 Pfam PF02223 Thymidylate kinase 539 656 2.9E-8 T 13-10-2018 IPR039430 Thymidylate kinase-like domain KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 RAM_45095 c22a0c32735b2e4e96dd215f4128ae5d 703 SUPERFAMILY SSF52540 535 664 4.43E-14 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_45095 c22a0c32735b2e4e96dd215f4128ae5d 703 Hamap MF_00165 Thymidylate kinase [tmk]. 481 668 13.535 T 13-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 RAM_14090 b069e7c03504c601ec1be66399b4adfb 209 SUPERFAMILY SSF63380 2 87 3.66E-24 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RAM_14090 b069e7c03504c601ec1be66399b4adfb 209 PIRSF PIRSF000498 1 205 1.2E-68 T 13-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RAM_14090 b069e7c03504c601ec1be66399b4adfb 209 Gene3D G3DSA:2.40.30.20 1 87 2.3E-26 T 13-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RAM_14090 b069e7c03504c601ec1be66399b4adfb 209 Gene3D G3DSA:2.40.30.20 101 202 3.1E-33 T 13-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RAM_14090 b069e7c03504c601ec1be66399b4adfb 209 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 2 193 2.7E-59 T 13-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RAM_14090 b069e7c03504c601ec1be66399b4adfb 209 SUPERFAMILY SSF63380 92 194 8.08E-30 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RAM_14090 b069e7c03504c601ec1be66399b4adfb 209 Pfam PF00677 Lumazine binding domain 99 180 6.9E-23 T 13-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RAM_14090 b069e7c03504c601ec1be66399b4adfb 209 Pfam PF00677 Lumazine binding domain 3 86 1.5E-22 T 13-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RAM_08420 97537f0c3fc6f0e4eac8981dbf498d3d 300 Gene3D G3DSA:3.40.50.720 122 248 1.0E-68 T 13-10-2018 RAM_08420 97537f0c3fc6f0e4eac8981dbf498d3d 300 SUPERFAMILY SSF51735 111 239 8.98E-24 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_08420 97537f0c3fc6f0e4eac8981dbf498d3d 300 SUPERFAMILY SSF50129 1 131 5.48E-36 T 13-10-2018 IPR011032 GroES-like superfamily RAM_08420 97537f0c3fc6f0e4eac8981dbf498d3d 300 Gene3D G3DSA:3.90.180.10 9 295 1.0E-68 T 13-10-2018 RAM_08420 97537f0c3fc6f0e4eac8981dbf498d3d 300 SMART SM00829 10 297 2.0E-10 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_08420 97537f0c3fc6f0e4eac8981dbf498d3d 300 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 27 87 1.2E-7 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_08420 97537f0c3fc6f0e4eac8981dbf498d3d 300 Pfam PF00107 Zinc-binding dehydrogenase 150 232 2.0E-9 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RAM_36915 680c09988f200964421d5774ad7e429c 172 Pfam PF01613 Flavin reductase like domain 14 156 4.0E-36 T 13-10-2018 IPR002563 Flavin reductase like domain GO:0010181 RAM_36915 680c09988f200964421d5774ad7e429c 172 SMART SM00903 13 157 4.2E-50 T 13-10-2018 IPR002563 Flavin reductase like domain GO:0010181 RAM_36915 680c09988f200964421d5774ad7e429c 172 SUPERFAMILY SSF50475 5 156 7.36E-44 T 13-10-2018 RAM_36915 680c09988f200964421d5774ad7e429c 172 Gene3D G3DSA:2.30.110.10 3 165 3.4E-48 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_23785 de0b935bf2be7e5f294b1b5a70a4f0d1 164 PRINTS PR00837 Allergen V5/Tpx-1 family signature 84 97 6.7E-7 T 13-10-2018 IPR001283 Cysteine-rich secretory protein, allergen V5/Tpx-1-related RAM_23785 de0b935bf2be7e5f294b1b5a70a4f0d1 164 PRINTS PR00837 Allergen V5/Tpx-1 family signature 140 153 6.7E-7 T 13-10-2018 IPR001283 Cysteine-rich secretory protein, allergen V5/Tpx-1-related RAM_23785 de0b935bf2be7e5f294b1b5a70a4f0d1 164 PRINTS PR00837 Allergen V5/Tpx-1 family signature 109 125 6.7E-7 T 13-10-2018 IPR001283 Cysteine-rich secretory protein, allergen V5/Tpx-1-related RAM_23785 de0b935bf2be7e5f294b1b5a70a4f0d1 164 Pfam PF00188 Cysteine-rich secretory protein family 19 135 1.1E-20 T 13-10-2018 IPR014044 CAP domain RAM_23785 de0b935bf2be7e5f294b1b5a70a4f0d1 164 Gene3D G3DSA:3.40.33.10 6 164 7.1E-38 T 13-10-2018 IPR035940 CAP superfamily RAM_23785 de0b935bf2be7e5f294b1b5a70a4f0d1 164 ProSitePatterns PS01009 CRISP family signature 1. 110 120 - T 13-10-2018 IPR018244 Allergen V5/Tpx-1-related, conserved site GO:0005576 RAM_23785 de0b935bf2be7e5f294b1b5a70a4f0d1 164 SUPERFAMILY SSF55797 9 162 7.06E-36 T 13-10-2018 IPR035940 CAP superfamily RAM_23785 de0b935bf2be7e5f294b1b5a70a4f0d1 164 SMART SM00198 12 153 8.3E-28 T 13-10-2018 IPR014044 CAP domain RAM_23630 714746a271c62776c21b4f926ea13cbb 143 SUPERFAMILY SSF46785 9 140 1.94E-31 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_23630 714746a271c62776c21b4f926ea13cbb 143 SMART SM00347 26 126 9.4E-16 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_23630 714746a271c62776c21b4f926ea13cbb 143 Pfam PF01047 MarR family 35 90 1.5E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_23630 714746a271c62776c21b4f926ea13cbb 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 116 136 1.2E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_23630 714746a271c62776c21b4f926ea13cbb 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 50 66 1.2E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_23630 714746a271c62776c21b4f926ea13cbb 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 67 82 1.2E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_23630 714746a271c62776c21b4f926ea13cbb 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 86 102 1.2E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_23630 714746a271c62776c21b4f926ea13cbb 143 Gene3D G3DSA:1.10.10.10 2 142 8.4E-34 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_21135 26cb142ed74b56541f625ab2d832f49d 334 TIGRFAM TIGR02778 ligD_pol: DNA ligase D, polymerase domain 14 259 2.7E-65 T 13-10-2018 IPR014145 DNA ligase D, polymerase domain RAM_21135 26cb142ed74b56541f625ab2d832f49d 334 Gene3D G3DSA:3.90.920.30 21 301 2.8E-88 T 13-10-2018 RAM_38185 8e5bb29a2d567034904ea366c6f6780b 278 SUPERFAMILY SSF51569 7 275 1.47E-82 T 13-10-2018 RAM_38185 8e5bb29a2d567034904ea366c6f6780b 278 Gene3D G3DSA:3.20.20.70 1 278 1.1E-91 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_38185 8e5bb29a2d567034904ea366c6f6780b 278 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 40 57 - T 13-10-2018 IPR020624 Schiff base-forming aldolase, conserved site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RAM_38185 8e5bb29a2d567034904ea366c6f6780b 278 PIRSF PIRSF001365 1 278 2.8E-75 T 13-10-2018 IPR002220 DapA-like GO:0016829 RAM_38185 8e5bb29a2d567034904ea366c6f6780b 278 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 8 276 1.9E-77 T 13-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RAM_38185 8e5bb29a2d567034904ea366c6f6780b 278 PRINTS PR00146 Dihydrodipicolinate synthase signature 37 58 2.3E-27 T 13-10-2018 IPR002220 DapA-like GO:0016829 RAM_38185 8e5bb29a2d567034904ea366c6f6780b 278 PRINTS PR00146 Dihydrodipicolinate synthase signature 130 147 2.3E-27 T 13-10-2018 IPR002220 DapA-like GO:0016829 RAM_38185 8e5bb29a2d567034904ea366c6f6780b 278 PRINTS PR00146 Dihydrodipicolinate synthase signature 73 91 2.3E-27 T 13-10-2018 IPR002220 DapA-like GO:0016829 RAM_38185 8e5bb29a2d567034904ea366c6f6780b 278 PRINTS PR00146 Dihydrodipicolinate synthase signature 105 121 2.3E-27 T 13-10-2018 IPR002220 DapA-like GO:0016829 RAM_38185 8e5bb29a2d567034904ea366c6f6780b 278 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 135 165 - T 13-10-2018 IPR020625 Schiff base-forming aldolase, active site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 RAM_38185 8e5bb29a2d567034904ea366c6f6780b 278 Pfam PF00701 Dihydrodipicolinate synthetase family 6 276 4.0E-76 T 13-10-2018 IPR002220 DapA-like GO:0016829 RAM_38185 8e5bb29a2d567034904ea366c6f6780b 278 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 3 278 48.921 T 13-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RAM_38185 8e5bb29a2d567034904ea366c6f6780b 278 SMART SM01130 3 278 4.5E-95 T 13-10-2018 IPR002220 DapA-like GO:0016829 RAM_23825 dd07e99a07fe7bf926a1d524bf4ebf91 201 SUPERFAMILY SSF46689 12 87 2.43E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_23825 dd07e99a07fe7bf926a1d524bf4ebf91 201 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 24 37 5.3E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_23825 dd07e99a07fe7bf926a1d524bf4ebf91 201 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 44 67 5.3E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_23825 dd07e99a07fe7bf926a1d524bf4ebf91 201 Pfam PF00440 Bacterial regulatory proteins, tetR family 25 69 9.8E-13 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_23825 dd07e99a07fe7bf926a1d524bf4ebf91 201 Gene3D G3DSA:1.10.357.10 8 200 5.2E-52 T 13-10-2018 RAM_23825 dd07e99a07fe7bf926a1d524bf4ebf91 201 SUPERFAMILY SSF48498 91 196 4.77E-12 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_41975 9171a944f95338a52fb5b67f0d454a11 195 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 7.7E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_41975 9171a944f95338a52fb5b67f0d454a11 195 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 7.7E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_41975 9171a944f95338a52fb5b67f0d454a11 195 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 64 5.0E-14 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_41975 9171a944f95338a52fb5b67f0d454a11 195 SUPERFAMILY SSF48498 85 189 3.41E-13 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_41975 9171a944f95338a52fb5b67f0d454a11 195 Gene3D G3DSA:1.10.357.10 7 194 5.2E-47 T 13-10-2018 RAM_41975 9171a944f95338a52fb5b67f0d454a11 195 SUPERFAMILY SSF46689 7 80 1.55E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_05875 99ba0fa259b6d0cc2fb0843a2963a53c 421 Pfam PF02056 Family 4 glycosyl hydrolase 2 180 7.8E-40 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RAM_05875 99ba0fa259b6d0cc2fb0843a2963a53c 421 Pfam PF11975 Family 4 glycosyl hydrolase C-terminal domain 191 395 5.7E-39 T 13-10-2018 IPR022616 Glycosyl hydrolase, family 4, C-terminal GO:0004553 RAM_05875 99ba0fa259b6d0cc2fb0843a2963a53c 421 PRINTS PR00732 Glycosyl hydrolase family 4 signature 2 17 3.6E-27 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RAM_05875 99ba0fa259b6d0cc2fb0843a2963a53c 421 PRINTS PR00732 Glycosyl hydrolase family 4 signature 71 87 3.6E-27 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RAM_05875 99ba0fa259b6d0cc2fb0843a2963a53c 421 PRINTS PR00732 Glycosyl hydrolase family 4 signature 106 126 3.6E-27 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RAM_05875 99ba0fa259b6d0cc2fb0843a2963a53c 421 PRINTS PR00732 Glycosyl hydrolase family 4 signature 160 171 3.6E-27 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RAM_05875 99ba0fa259b6d0cc2fb0843a2963a53c 421 PRINTS PR00732 Glycosyl hydrolase family 4 signature 186 198 3.6E-27 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RAM_05875 99ba0fa259b6d0cc2fb0843a2963a53c 421 PRINTS PR00732 Glycosyl hydrolase family 4 signature 92 105 3.6E-27 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RAM_05875 99ba0fa259b6d0cc2fb0843a2963a53c 421 SUPERFAMILY SSF56327 166 417 1.81E-59 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 RAM_05875 99ba0fa259b6d0cc2fb0843a2963a53c 421 SUPERFAMILY SSF51735 1 157 1.16E-38 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_05875 99ba0fa259b6d0cc2fb0843a2963a53c 421 Gene3D G3DSA:3.90.110.10 84 415 2.3E-130 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 RAM_05875 99ba0fa259b6d0cc2fb0843a2963a53c 421 Gene3D G3DSA:3.40.50.720 4 163 2.3E-130 T 13-10-2018 RAM_13175 c4b7fffb6dc803dbdeabffcf1bdd4065 758 Pfam PF00128 Alpha amylase, catalytic domain 27 233 2.6E-14 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RAM_13175 c4b7fffb6dc803dbdeabffcf1bdd4065 758 TIGRFAM TIGR02401 trehalose_TreY: malto-oligosyltrehalose synthase 4 755 7.9E-259 T 13-10-2018 IPR012767 Maltooligosyl trehalose synthase KEGG: 00500+5.4.99.15|MetaCyc: PWY-2661 RAM_13175 c4b7fffb6dc803dbdeabffcf1bdd4065 758 SMART SM00642 1 381 4.5E-6 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RAM_13175 c4b7fffb6dc803dbdeabffcf1bdd4065 758 SUPERFAMILY SSF51445 3 676 1.17E-124 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_13175 c4b7fffb6dc803dbdeabffcf1bdd4065 758 Gene3D G3DSA:1.10.10.470 493 583 2.2E-187 T 13-10-2018 RAM_13175 c4b7fffb6dc803dbdeabffcf1bdd4065 758 Gene3D G3DSA:3.20.20.80 6 658 2.2E-187 T 13-10-2018 RAM_13175 c4b7fffb6dc803dbdeabffcf1bdd4065 758 Gene3D G3DSA:1.10.150.200 314 449 2.2E-187 T 13-10-2018 RAM_13175 c4b7fffb6dc803dbdeabffcf1bdd4065 758 Gene3D G3DSA:3.30.1590.10 90 208 2.2E-187 T 13-10-2018 RAM_09725 a680528bb52d5c7aee80d031b8862650 162 SMART SM00347 37 139 1.8E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_09725 a680528bb52d5c7aee80d031b8862650 162 Gene3D G3DSA:1.10.10.10 13 157 3.4E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_09725 a680528bb52d5c7aee80d031b8862650 162 Pfam PF12802 MarR family 49 102 7.8E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_09725 a680528bb52d5c7aee80d031b8862650 162 SUPERFAMILY SSF46785 20 153 2.36E-25 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_07715 c5839886e7339834570c117364a03a4d 489 Gene3D G3DSA:2.60.120.10 108 240 1.7E-19 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_07715 c5839886e7339834570c117364a03a4d 489 Pfam PF00027 Cyclic nucleotide-binding domain 133 220 1.4E-14 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain RAM_07715 c5839886e7339834570c117364a03a4d 489 SMART SM00100 113 236 3.5E-9 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain RAM_07715 c5839886e7339834570c117364a03a4d 489 SUPERFAMILY SSF51206 119 225 1.13E-21 T 13-10-2018 IPR018490 Cyclic nucleotide-binding-like RAM_07715 c5839886e7339834570c117364a03a4d 489 SUPERFAMILY SSF56563 320 481 4.58E-5 T 13-10-2018 RAM_01280 162963b08088db27a789b45b7900c583 270 Pfam PF00106 short chain dehydrogenase 7 198 2.0E-51 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_01280 162963b08088db27a789b45b7900c583 270 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 1.2E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_01280 162963b08088db27a789b45b7900c583 270 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 1.2E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_01280 162963b08088db27a789b45b7900c583 270 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 1.2E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_01280 162963b08088db27a789b45b7900c583 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 5.1E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_01280 162963b08088db27a789b45b7900c583 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 5.1E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_01280 162963b08088db27a789b45b7900c583 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 5.1E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_01280 162963b08088db27a789b45b7900c583 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 5.1E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_01280 162963b08088db27a789b45b7900c583 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 5.1E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_01280 162963b08088db27a789b45b7900c583 270 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 190 1.5E-4 T 13-10-2018 RAM_01280 162963b08088db27a789b45b7900c583 270 SUPERFAMILY SSF51735 1 257 3.69E-67 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_01280 162963b08088db27a789b45b7900c583 270 Gene3D G3DSA:3.40.50.720 1 247 3.8E-69 T 13-10-2018 RAM_01280 162963b08088db27a789b45b7900c583 270 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_24535 064e45e35fe3a858e3920c54dcd8825b 275 Gene3D G3DSA:3.40.50.150 2 273 4.2E-97 T 13-10-2018 RAM_24535 064e45e35fe3a858e3920c54dcd8825b 275 SUPERFAMILY SSF53335 20 249 1.31E-39 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_24535 064e45e35fe3a858e3920c54dcd8825b 275 PIRSF PIRSF017393 1 273 2.8E-88 T 13-10-2018 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type RAM_24535 064e45e35fe3a858e3920c54dcd8825b 275 Pfam PF04672 S-adenosyl methyltransferase 9 272 4.5E-81 T 13-10-2018 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type RAM_44030 feae34471639c0554a33e0d158cd1abb 357 Gene3D G3DSA:3.30.9.10 89 295 1.8E-72 T 13-10-2018 RAM_44030 feae34471639c0554a33e0d158cd1abb 357 SUPERFAMILY SSF51905 3 351 9.06E-37 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_44030 feae34471639c0554a33e0d158cd1abb 357 Pfam PF01266 FAD dependent oxidoreductase 4 332 1.4E-55 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RAM_44030 feae34471639c0554a33e0d158cd1abb 357 TIGRFAM TIGR02352 thiamin_ThiO: glycine oxidase ThiO 5 336 1.0E-91 T 13-10-2018 IPR012727 Glycine oxidase ThiO GO:0016491|GO:0050660 KEGG: 00730+1.4.3.19|MetaCyc: PWY-7396|MetaCyc: PWY-7806 RAM_44030 feae34471639c0554a33e0d158cd1abb 357 SUPERFAMILY SSF54373 202 294 2.22E-15 T 13-10-2018 RAM_44030 feae34471639c0554a33e0d158cd1abb 357 Gene3D G3DSA:3.50.50.60 5 334 1.8E-72 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_46240 5a3b09c5fe43625b5a9fbb2f9ea36d49 204 Pfam PF08768 Domain of unknown function (DUF1794) 50 201 1.1E-51 T 13-10-2018 IPR014878 Domain of unknown function DUF1794 RAM_46240 5a3b09c5fe43625b5a9fbb2f9ea36d49 204 SUPERFAMILY SSF50814 44 202 4.96E-44 T 13-10-2018 IPR012674 Calycin RAM_46240 5a3b09c5fe43625b5a9fbb2f9ea36d49 204 Hamap MF_01297 UPF0678 fatty acid-binding protein-like protein . 41 203 33.337 T 13-10-2018 IPR022939 Uncharacterised protein family UPF0678 RAM_46240 5a3b09c5fe43625b5a9fbb2f9ea36d49 204 Gene3D G3DSA:2.40.128.20 11 204 1.0E-77 T 13-10-2018 IPR012674 Calycin RAM_16445 0643f23248c5fae84b8eace90dded88c 427 PIRSF PIRSF037495 1 425 2.9E-113 T 13-10-2018 IPR017224 Opine oxidase, subunit A/hydrogen cyanide synthase, subunit B GO:0016491|GO:0055114 RAM_16445 0643f23248c5fae84b8eace90dded88c 427 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 91 99 4.9E-14 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAM_16445 0643f23248c5fae84b8eace90dded88c 427 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 130 154 4.9E-14 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAM_16445 0643f23248c5fae84b8eace90dded88c 427 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 3 25 4.9E-14 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAM_16445 0643f23248c5fae84b8eace90dded88c 427 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 277 295 4.9E-14 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAM_16445 0643f23248c5fae84b8eace90dded88c 427 Gene3D G3DSA:3.50.50.60 102 249 5.2E-42 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_16445 0643f23248c5fae84b8eace90dded88c 427 SUPERFAMILY SSF51905 3 311 4.02E-39 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_16445 0643f23248c5fae84b8eace90dded88c 427 Pfam PF04324 BFD-like [2Fe-2S] binding domain 350 400 2.9E-8 T 13-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain RAM_16445 0643f23248c5fae84b8eace90dded88c 427 Gene3D G3DSA:3.50.50.60 4 302 5.2E-42 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_16445 0643f23248c5fae84b8eace90dded88c 427 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 300 1.0E-27 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAM_16445 0643f23248c5fae84b8eace90dded88c 427 Gene3D G3DSA:1.10.10.1100 344 408 2.8E-16 T 13-10-2018 RAM_16445 0643f23248c5fae84b8eace90dded88c 427 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 267 289 3.9E-22 T 13-10-2018 RAM_16445 0643f23248c5fae84b8eace90dded88c 427 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 241 257 3.9E-22 T 13-10-2018 RAM_16445 0643f23248c5fae84b8eace90dded88c 427 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 90 108 3.9E-22 T 13-10-2018 RAM_16445 0643f23248c5fae84b8eace90dded88c 427 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 3.9E-22 T 13-10-2018 RAM_16445 0643f23248c5fae84b8eace90dded88c 427 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 134 152 3.9E-22 T 13-10-2018 RAM_12375 43b95a0759f64d5d25422f26f06bfe9e 409 Pfam PF02470 MlaD protein 38 113 1.3E-17 T 13-10-2018 IPR003399 Mce/MlaD RAM_12375 43b95a0759f64d5d25422f26f06bfe9e 409 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 9 291 6.8E-61 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_26485 3ba783c9758dace90c49ed0681c2baf2 588 SUPERFAMILY SSF52016 376 572 3.06E-44 T 13-10-2018 RAM_26485 3ba783c9758dace90c49ed0681c2baf2 588 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 122 132 - T 13-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RAM_26485 3ba783c9758dace90c49ed0681c2baf2 588 Pfam PF00920 Dehydratase family 39 561 2.6E-156 T 13-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RAM_26485 3ba783c9758dace90c49ed0681c2baf2 588 SUPERFAMILY SSF143975 4 373 6.02E-121 T 13-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RAM_26485 3ba783c9758dace90c49ed0681c2baf2 588 Gene3D G3DSA:3.50.30.80 376 536 7.6E-34 T 13-10-2018 RAM_17370 acdb4f999be08f286f9115f7aba222f8 184 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 59 2.3E-13 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_17370 acdb4f999be08f286f9115f7aba222f8 184 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 6.7E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_17370 acdb4f999be08f286f9115f7aba222f8 184 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 6.7E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_17370 acdb4f999be08f286f9115f7aba222f8 184 SUPERFAMILY SSF46689 2 86 3.89E-20 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_17370 acdb4f999be08f286f9115f7aba222f8 184 Gene3D G3DSA:1.10.357.10 10 183 1.3E-32 T 13-10-2018 RAM_26965 274b3bd84d924ab99b38d5d50f803e76 429 SUPERFAMILY SSF51338 1 408 6.11E-26 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_26965 274b3bd84d924ab99b38d5d50f803e76 429 Gene3D G3DSA:2.30.40.10 10 389 3.0E-104 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_26965 274b3bd84d924ab99b38d5d50f803e76 429 SUPERFAMILY SSF51556 56 335 3.02E-53 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_26965 274b3bd84d924ab99b38d5d50f803e76 429 Gene3D G3DSA:3.20.20.140 58 393 3.0E-104 T 13-10-2018 RAM_26965 274b3bd84d924ab99b38d5d50f803e76 429 Pfam PF01979 Amidohydrolase family 53 383 2.6E-30 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RAM_17795 4e6d2d8325c6971c34dd7d2f623e135b 288 Pfam PF00561 alpha/beta hydrolase fold 30 260 2.4E-19 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_17795 4e6d2d8325c6971c34dd7d2f623e135b 288 PRINTS PR00111 Alpha/beta hydrolase fold signature 54 69 1.2E-5 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_17795 4e6d2d8325c6971c34dd7d2f623e135b 288 PRINTS PR00111 Alpha/beta hydrolase fold signature 218 232 1.2E-5 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_17795 4e6d2d8325c6971c34dd7d2f623e135b 288 PRINTS PR00111 Alpha/beta hydrolase fold signature 98 111 1.2E-5 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_17795 4e6d2d8325c6971c34dd7d2f623e135b 288 PRINTS PR00111 Alpha/beta hydrolase fold signature 112 125 1.2E-5 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_17795 4e6d2d8325c6971c34dd7d2f623e135b 288 SUPERFAMILY SSF53474 9 273 7.3E-34 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_17795 4e6d2d8325c6971c34dd7d2f623e135b 288 Gene3D G3DSA:3.40.50.1820 3 273 1.0E-35 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_03525 28bb4c366c0281d6ecb27bb08e923a26 61 ProSitePatterns PS00527 Ribosomal protein S14 signature. 23 45 - T 13-10-2018 IPR018271 Ribosomal protein S14, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_03525 28bb4c366c0281d6ecb27bb08e923a26 61 Pfam PF00253 Ribosomal protein S14p/S29e 9 60 2.2E-25 T 13-10-2018 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_03525 28bb4c366c0281d6ecb27bb08e923a26 61 Hamap MF_01364_B 30S ribosomal protein S14 type Z [rpsZ]. 1 61 25.795 T 13-10-2018 IPR023053 Ribosomal protein S14, type Z RAM_03525 28bb4c366c0281d6ecb27bb08e923a26 61 SUPERFAMILY SSF57716 4 61 4.28E-22 T 13-10-2018 RAM_03525 28bb4c366c0281d6ecb27bb08e923a26 61 Gene3D G3DSA:4.10.830.10 1 61 1.0E-31 T 13-10-2018 RAM_22410 09c1121e72a34b088617b6620877163f 327 Pfam PF02653 Branched-chain amino acid transport system / permease component 54 315 6.1E-43 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 RAM_34710 c7f13c402b2e45da2f85a5dbdeb7c6e0 159 Gene3D G3DSA:3.40.50.300 14 129 4.9E-17 T 13-10-2018 RAM_34710 c7f13c402b2e45da2f85a5dbdeb7c6e0 159 SUPERFAMILY SSF52540 18 91 2.67E-8 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_27125 3c419178339e57cc31f5ad3417852d31 173 Gene3D G3DSA:1.10.10.10 6 163 1.8E-39 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_27125 3c419178339e57cc31f5ad3417852d31 173 Pfam PF12802 MarR family 37 98 1.5E-15 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_27125 3c419178339e57cc31f5ad3417852d31 173 PRINTS PR00598 Bacterial regulatory protein MarR family signature 75 90 1.4E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_27125 3c419178339e57cc31f5ad3417852d31 173 PRINTS PR00598 Bacterial regulatory protein MarR family signature 125 145 1.4E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_27125 3c419178339e57cc31f5ad3417852d31 173 PRINTS PR00598 Bacterial regulatory protein MarR family signature 94 110 1.4E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_27125 3c419178339e57cc31f5ad3417852d31 173 PRINTS PR00598 Bacterial regulatory protein MarR family signature 58 74 1.4E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_27125 3c419178339e57cc31f5ad3417852d31 173 SMART SM00347 32 135 1.8E-17 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_27125 3c419178339e57cc31f5ad3417852d31 173 SUPERFAMILY SSF46785 5 149 2.84E-29 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_16795 7a0f92f4a5fa90b8c58a1335cc61020e 172 Gene3D G3DSA:1.10.10.10 86 170 1.5E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_16795 7a0f92f4a5fa90b8c58a1335cc61020e 172 SUPERFAMILY SSF88659 104 165 2.8E-14 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_16795 7a0f92f4a5fa90b8c58a1335cc61020e 172 TIGRFAM TIGR02983 SigE-fam_strep: RNA polymerase sigma-70 factor, sigma-E family 11 163 2.4E-53 T 13-10-2018 IPR014325 RNA polymerase sigma-E factor, actinobacteria GO:0016987 RAM_16795 7a0f92f4a5fa90b8c58a1335cc61020e 172 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 15 163 1.5E-21 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_16795 7a0f92f4a5fa90b8c58a1335cc61020e 172 Pfam PF08281 Sigma-70, region 4 110 159 3.3E-15 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_16795 7a0f92f4a5fa90b8c58a1335cc61020e 172 Pfam PF04542 Sigma-70 region 2 23 85 3.3E-12 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_16795 7a0f92f4a5fa90b8c58a1335cc61020e 172 Gene3D G3DSA:1.10.1740.10 3 85 1.1E-15 T 13-10-2018 RAM_16795 7a0f92f4a5fa90b8c58a1335cc61020e 172 SUPERFAMILY SSF88946 10 103 8.24E-18 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_36670 1b6da6c044dcbb9d57a3d346624d0e67 297 Gene3D G3DSA:3.10.180.10 163 285 2.7E-7 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_36670 1b6da6c044dcbb9d57a3d346624d0e67 297 SUPERFAMILY SSF54593 163 287 3.41E-9 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_28795 b2b84015db631546485e54e07bdb733a 152 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 5 144 5.5E-6 T 13-10-2018 IPR019587 Polyketide cyclase/dehydrase RAM_28795 b2b84015db631546485e54e07bdb733a 152 SUPERFAMILY SSF55961 3 143 3.57E-7 T 13-10-2018 RAM_42080 0009b4657292a603c9c378a152b1aba6 309 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 308 1.6E-34 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_42080 0009b4657292a603c9c378a152b1aba6 309 Gene3D G3DSA:1.10.3720.10 85 302 2.1E-19 T 13-10-2018 IPR035906 MetI-like superfamily RAM_42080 0009b4657292a603c9c378a152b1aba6 309 SUPERFAMILY SSF161098 91 295 2.62E-16 T 13-10-2018 IPR035906 MetI-like superfamily RAM_14965 1b821ced824ce109fc3fc387e428b8a0 189 SUPERFAMILY SSF46689 6 84 3.39E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_14965 1b821ced824ce109fc3fc387e428b8a0 189 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 57 6.9E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_14965 1b821ced824ce109fc3fc387e428b8a0 189 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 2.9E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_14965 1b821ced824ce109fc3fc387e428b8a0 189 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 2.9E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_14965 1b821ced824ce109fc3fc387e428b8a0 189 SUPERFAMILY SSF48498 79 169 2.35E-10 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_14965 1b821ced824ce109fc3fc387e428b8a0 189 Gene3D G3DSA:1.10.357.10 1 189 3.9E-64 T 13-10-2018 RAM_15560 9fb18cba2b2df83dfb77639423217d2b 590 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 257 311 - T 13-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_15560 9fb18cba2b2df83dfb77639423217d2b 590 TIGRFAM TIGR02891 CtaD_CoxA: cytochrome c oxidase, subunit I 30 532 1.1E-213 T 13-10-2018 IPR014241 Cytochrome c oxidase, subunit I bacterial type GO:0004129|GO:0005886|GO:0015990|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 RAM_15560 9fb18cba2b2df83dfb77639423217d2b 590 Gene3D G3DSA:1.20.210.10 18 541 3.3E-203 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_15560 9fb18cba2b2df83dfb77639423217d2b 590 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 37 480 7.9E-148 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_15560 9fb18cba2b2df83dfb77639423217d2b 590 PRINTS PR01165 Cytochrome c oxidase subunit I signature 255 276 2.4E-99 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_15560 9fb18cba2b2df83dfb77639423217d2b 590 PRINTS PR01165 Cytochrome c oxidase subunit I signature 436 457 2.4E-99 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_15560 9fb18cba2b2df83dfb77639423217d2b 590 PRINTS PR01165 Cytochrome c oxidase subunit I signature 301 316 2.4E-99 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_15560 9fb18cba2b2df83dfb77639423217d2b 590 PRINTS PR01165 Cytochrome c oxidase subunit I signature 144 156 2.4E-99 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_15560 9fb18cba2b2df83dfb77639423217d2b 590 PRINTS PR01165 Cytochrome c oxidase subunit I signature 27 52 2.4E-99 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_15560 9fb18cba2b2df83dfb77639423217d2b 590 PRINTS PR01165 Cytochrome c oxidase subunit I signature 205 224 2.4E-99 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_15560 9fb18cba2b2df83dfb77639423217d2b 590 PRINTS PR01165 Cytochrome c oxidase subunit I signature 176 194 2.4E-99 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_15560 9fb18cba2b2df83dfb77639423217d2b 590 PRINTS PR01165 Cytochrome c oxidase subunit I signature 234 255 2.4E-99 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_15560 9fb18cba2b2df83dfb77639423217d2b 590 PRINTS PR01165 Cytochrome c oxidase subunit I signature 386 405 2.4E-99 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_15560 9fb18cba2b2df83dfb77639423217d2b 590 PRINTS PR01165 Cytochrome c oxidase subunit I signature 101 125 2.4E-99 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_15560 9fb18cba2b2df83dfb77639423217d2b 590 PRINTS PR01165 Cytochrome c oxidase subunit I signature 323 344 2.4E-99 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_15560 9fb18cba2b2df83dfb77639423217d2b 590 PRINTS PR01165 Cytochrome c oxidase subunit I signature 358 376 2.4E-99 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_15560 9fb18cba2b2df83dfb77639423217d2b 590 PRINTS PR01165 Cytochrome c oxidase subunit I signature 74 97 2.4E-99 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_15560 9fb18cba2b2df83dfb77639423217d2b 590 SUPERFAMILY SSF81442 25 535 1.83E-175 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_12155 84d79d2b1a20d3f878ce2872954fe2e2 482 Pfam PF13167 GTP-binding GTPase N-terminal 73 161 6.0E-34 T 13-10-2018 IPR025121 GTPase HflX, N-terminal RAM_12155 84d79d2b1a20d3f878ce2872954fe2e2 482 PIRSF PIRSF006809 48 481 4.1E-159 T 13-10-2018 IPR016496 GTPase HflX GO:0005525 RAM_12155 84d79d2b1a20d3f878ce2872954fe2e2 482 PIRSF PIRSF006809 3 54 230.0 T 13-10-2018 IPR016496 GTPase HflX GO:0005525 RAM_12155 84d79d2b1a20d3f878ce2872954fe2e2 482 Hamap MF_00900 GTPase HflX [hflX]. 76 449 49.329 T 13-10-2018 IPR016496 GTPase HflX GO:0005525 RAM_12155 84d79d2b1a20d3f878ce2872954fe2e2 482 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 257 277 7.3E-8 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 RAM_12155 84d79d2b1a20d3f878ce2872954fe2e2 482 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 324 342 7.3E-8 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 RAM_12155 84d79d2b1a20d3f878ce2872954fe2e2 482 Gene3D G3DSA:3.40.50.300 254 424 2.3E-40 T 13-10-2018 RAM_12155 84d79d2b1a20d3f878ce2872954fe2e2 482 Gene3D G3DSA:3.40.50.11060 66 187 9.5E-43 T 13-10-2018 RAM_12155 84d79d2b1a20d3f878ce2872954fe2e2 482 Pfam PF16360 GTP-binding GTPase Middle Region 163 249 8.7E-29 T 13-10-2018 IPR032305 GTP-binding protein, middle domain RAM_12155 84d79d2b1a20d3f878ce2872954fe2e2 482 SUPERFAMILY SSF52540 256 445 6.04E-40 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_12155 84d79d2b1a20d3f878ce2872954fe2e2 482 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 57 419 1.2E-133 T 13-10-2018 IPR016496 GTPase HflX GO:0005525 RAM_12155 84d79d2b1a20d3f878ce2872954fe2e2 482 Pfam PF01926 50S ribosome-binding GTPase 257 379 4.9E-21 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 RAM_44330 f29a611aa2a8582b305faed6cf15e7f6 397 Pfam PF08245 Mur ligase middle domain 47 251 1.2E-13 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 RAM_44330 f29a611aa2a8582b305faed6cf15e7f6 397 SUPERFAMILY SSF53623 32 267 1.7E-33 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RAM_44330 f29a611aa2a8582b305faed6cf15e7f6 397 Pfam PF08353 Domain of unknown function (DUF1727) 289 387 4.0E-22 T 13-10-2018 IPR013564 Domain of unknown function DUF1727 RAM_44330 f29a611aa2a8582b305faed6cf15e7f6 397 Gene3D G3DSA:3.40.1190.10 34 271 3.3E-36 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RAM_00190 4573a4ff558567167b9dc978b643bcc1 88 Hamap MF_00631 Cell division protein CrgA [crgA]. 1 88 23.544 T 13-10-2018 IPR009619 Cell division protein CrgA RAM_00190 4573a4ff558567167b9dc978b643bcc1 88 Pfam PF06781 Cell division protein CrgA 1 88 2.9E-35 T 13-10-2018 IPR009619 Cell division protein CrgA RAM_28050 57beaa8d27b18ebe71c19cd4ebf3dfba 144 Gene3D G3DSA:3.10.450.50 6 142 3.0E-35 T 13-10-2018 RAM_28050 57beaa8d27b18ebe71c19cd4ebf3dfba 144 SUPERFAMILY SSF54427 14 139 9.25E-34 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_28050 57beaa8d27b18ebe71c19cd4ebf3dfba 144 Pfam PF12680 SnoaL-like domain 20 126 8.0E-15 T 13-10-2018 IPR037401 SnoaL-like domain RAM_09250 24bad3906092f6df7d1521138b669904 710 SUPERFAMILY SSF56601 293 447 8.68E-20 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_09250 24bad3906092f6df7d1521138b669904 710 Gene3D G3DSA:3.40.710.10 279 466 1.3E-26 T 13-10-2018 RAM_09250 24bad3906092f6df7d1521138b669904 710 Pfam PF00912 Transglycosylase 82 246 9.0E-42 T 13-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RAM_09250 24bad3906092f6df7d1521138b669904 710 Gene3D G3DSA:1.10.3810.10 71 260 5.3E-48 T 13-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RAM_09250 24bad3906092f6df7d1521138b669904 710 SUPERFAMILY SSF53955 66 260 3.09E-46 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily RAM_06195 ab06165bdc1d5b5c3d829ad38dcb3f09 519 Gene3D G3DSA:3.90.1300.10 28 516 1.2E-161 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RAM_06195 ab06165bdc1d5b5c3d829ad38dcb3f09 519 Pfam PF01425 Amidase 55 495 1.9E-103 T 13-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RAM_06195 ab06165bdc1d5b5c3d829ad38dcb3f09 519 SUPERFAMILY SSF75304 32 511 6.28E-111 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RAM_35960 035a0721308c7d10b77fd319a04c273b 208 SUPERFAMILY SSF54593 111 204 6.44E-7 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_35960 035a0721308c7d10b77fd319a04c273b 208 SUPERFAMILY SSF54593 3 101 1.13E-14 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_35960 035a0721308c7d10b77fd319a04c273b 208 Gene3D G3DSA:3.10.180.10 111 184 5.9E-7 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_35960 035a0721308c7d10b77fd319a04c273b 208 Gene3D G3DSA:3.10.180.10 28 110 1.2E-14 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_46890 288c685dd78ac89e80d9ed10a5a1f199 714 Gene3D G3DSA:3.40.50.740 66 461 1.0E-101 T 13-10-2018 RAM_46890 288c685dd78ac89e80d9ed10a5a1f199 714 Gene3D G3DSA:3.40.228.10 134 333 1.0E-101 T 13-10-2018 RAM_46890 288c685dd78ac89e80d9ed10a5a1f199 714 Pfam PF00384 Molybdopterin oxidoreductase 59 437 1.4E-45 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_46890 288c685dd78ac89e80d9ed10a5a1f199 714 SUPERFAMILY SSF53706 1 498 2.75E-122 T 13-10-2018 RAM_46890 288c685dd78ac89e80d9ed10a5a1f199 714 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 4 52 9.3E-10 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_46890 288c685dd78ac89e80d9ed10a5a1f199 714 SUPERFAMILY SSF50692 583 713 2.94E-29 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily RAM_46890 288c685dd78ac89e80d9ed10a5a1f199 714 Pfam PF01568 Molydopterin dinucleotide binding domain 588 690 4.4E-20 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 RAM_46890 288c685dd78ac89e80d9ed10a5a1f199 714 Gene3D G3DSA:2.20.25.90 1 61 8.9E-13 T 13-10-2018 RAM_46890 288c685dd78ac89e80d9ed10a5a1f199 714 Gene3D G3DSA:2.40.40.20 573 714 6.4E-24 T 13-10-2018 RAM_46890 288c685dd78ac89e80d9ed10a5a1f199 714 SMART SM00926 1 56 5.0E-15 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_27370 5835e39e0e311dc67230fbdf6116cd17 360 Pfam PF13377 Periplasmic binding protein-like domain 191 355 8.8E-29 T 13-10-2018 RAM_27370 5835e39e0e311dc67230fbdf6116cd17 360 Gene3D G3DSA:3.40.50.2300 86 347 1.1E-43 T 13-10-2018 RAM_27370 5835e39e0e311dc67230fbdf6116cd17 360 Pfam PF08220 DeoR-like helix-turn-helix domain 8 61 1.3E-11 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RAM_27370 5835e39e0e311dc67230fbdf6116cd17 360 SUPERFAMILY SSF46785 6 59 9.93E-8 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_27370 5835e39e0e311dc67230fbdf6116cd17 360 SMART SM00420 8 60 3.9E-8 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RAM_27370 5835e39e0e311dc67230fbdf6116cd17 360 SUPERFAMILY SSF53822 81 338 5.3E-33 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_27370 5835e39e0e311dc67230fbdf6116cd17 360 ProSitePatterns PS00894 DeoR-type HTH domain signature. 8 42 - T 13-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 RAM_27370 5835e39e0e311dc67230fbdf6116cd17 360 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 40 58 3.3E-6 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RAM_27370 5835e39e0e311dc67230fbdf6116cd17 360 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 26 40 3.3E-6 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RAM_27370 5835e39e0e311dc67230fbdf6116cd17 360 Gene3D G3DSA:3.40.50.2300 183 352 1.1E-43 T 13-10-2018 RAM_40395 75108b906cfc4ff87708a4562646291b 673 Pfam PF01968 Hydantoinase/oxoprolinase 196 486 5.7E-83 T 13-10-2018 IPR002821 Hydantoinase A/oxoprolinase GO:0016787 Reactome: R-HSA-174403|Reactome: R-HSA-5578998 RAM_40395 75108b906cfc4ff87708a4562646291b 673 SUPERFAMILY SSF53067 2 345 7.64E-6 T 13-10-2018 RAM_40395 75108b906cfc4ff87708a4562646291b 673 Pfam PF05378 Hydantoinase/oxoprolinase N-terminal region 2 175 5.5E-52 T 13-10-2018 IPR008040 Hydantoinaseoxoprolinase, N-terminal Reactome: R-HSA-174403|Reactome: R-HSA-5578998 RAM_35000 3a54cd5c04b8480d97c0dd20cfca2649 165 SMART SM00507 69 118 7.6E-15 T 13-10-2018 IPR003615 HNH nuclease RAM_35000 3a54cd5c04b8480d97c0dd20cfca2649 165 Pfam PF14279 HNH endonuclease 82 127 5.1E-13 T 13-10-2018 IPR029471 HNH endonuclease 5 RAM_35000 3a54cd5c04b8480d97c0dd20cfca2649 165 Gene3D G3DSA:3.30.40.60 63 146 1.0E-20 T 13-10-2018 RAM_25280 12c666ac8d2edf31c9d2fed74147a033 397 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 187 207 4.8E-6 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RAM_25280 12c666ac8d2edf31c9d2fed74147a033 397 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 56 70 4.8E-6 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RAM_25280 12c666ac8d2edf31c9d2fed74147a033 397 PIRSF PIRSF000185 5 386 6.3E-77 T 13-10-2018 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 RAM_25280 12c666ac8d2edf31c9d2fed74147a033 397 SUPERFAMILY SSF51735 154 374 4.34E-38 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_25280 12c666ac8d2edf31c9d2fed74147a033 397 SMART SM00839 159 386 4.6E-41 T 13-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RAM_25280 12c666ac8d2edf31c9d2fed74147a033 397 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 154 321 5.0E-35 T 13-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RAM_25280 12c666ac8d2edf31c9d2fed74147a033 397 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 64 77 - T 13-10-2018 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RAM_25280 12c666ac8d2edf31c9d2fed74147a033 397 Gene3D G3DSA:3.40.50.720 154 385 5.4E-44 T 13-10-2018 RAM_25280 12c666ac8d2edf31c9d2fed74147a033 397 Gene3D G3DSA:3.40.50.10860 8 123 1.1E-22 T 13-10-2018 RAM_25280 12c666ac8d2edf31c9d2fed74147a033 397 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 19 117 3.4E-15 T 13-10-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RAM_25280 12c666ac8d2edf31c9d2fed74147a033 397 SUPERFAMILY SSF53223 10 128 5.44E-26 T 13-10-2018 RAM_15100 018fd7ef17a1b4d083612edd35e64a1f 260 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 77 234 14.963 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 RAM_15100 018fd7ef17a1b4d083612edd35e64a1f 260 Pfam PF01252 Signal peptidase (SPase) II 86 228 2.5E-29 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 RAM_15100 018fd7ef17a1b4d083612edd35e64a1f 260 ProSitePatterns PS00855 Signal peptidases II signature. 169 181 - T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 RAM_15100 018fd7ef17a1b4d083612edd35e64a1f 260 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 166 181 1.7E-15 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 RAM_15100 018fd7ef17a1b4d083612edd35e64a1f 260 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 124 132 1.7E-15 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 RAM_15100 018fd7ef17a1b4d083612edd35e64a1f 260 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 209 225 1.7E-15 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 RAM_15100 018fd7ef17a1b4d083612edd35e64a1f 260 TIGRFAM TIGR00077 lspA: signal peptidase II 78 230 2.7E-29 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 RAM_22870 fa6aa29fad796c044b4af1a82c7c66ec 288 Gene3D G3DSA:3.40.50.10330 19 275 1.2E-64 T 13-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 RAM_22870 fa6aa29fad796c044b4af1a82c7c66ec 288 Pfam PF01513 ATP-NAD kinase 49 260 1.1E-43 T 13-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 RAM_22870 fa6aa29fad796c044b4af1a82c7c66ec 288 Gene3D G3DSA:2.60.200.30 122 253 1.2E-64 T 13-10-2018 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal GO:0003951|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 RAM_22870 fa6aa29fad796c044b4af1a82c7c66ec 288 SUPERFAMILY SSF111331 14 276 5.36E-61 T 13-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily RAM_22870 fa6aa29fad796c044b4af1a82c7c66ec 288 Hamap MF_00361 NAD kinase [nadK]. 2 276 26.283 T 13-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 RAM_19755 ca167d746f5ee6a013457b0e2688644b 286 SUPERFAMILY SSF51735 8 252 2.57E-59 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_19755 ca167d746f5ee6a013457b0e2688644b 286 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 8.2E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19755 ca167d746f5ee6a013457b0e2688644b 286 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 8.2E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19755 ca167d746f5ee6a013457b0e2688644b 286 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 8.2E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19755 ca167d746f5ee6a013457b0e2688644b 286 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 194 0.0049 T 13-10-2018 RAM_19755 ca167d746f5ee6a013457b0e2688644b 286 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_19755 ca167d746f5ee6a013457b0e2688644b 286 Gene3D G3DSA:3.40.50.720 7 283 7.3E-75 T 13-10-2018 RAM_19755 ca167d746f5ee6a013457b0e2688644b 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 2.0E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19755 ca167d746f5ee6a013457b0e2688644b 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 2.0E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19755 ca167d746f5ee6a013457b0e2688644b 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 2.0E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19755 ca167d746f5ee6a013457b0e2688644b 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 2.0E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19755 ca167d746f5ee6a013457b0e2688644b 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 2.0E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19755 ca167d746f5ee6a013457b0e2688644b 286 Pfam PF00106 short chain dehydrogenase 10 192 1.5E-42 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_04610 da772d1cb78862e4876c8d020a2e115d 142 Gene3D G3DSA:1.10.260.40 2 123 2.0E-30 T 13-10-2018 RAM_04610 da772d1cb78862e4876c8d020a2e115d 142 SUPERFAMILY SSF47413 43 82 2.74E-5 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_47750 ca3c9678f14838a943f13c945e64cb6c 222 Gene3D G3DSA:3.40.50.12740 7 219 7.2E-60 T 13-10-2018 RAM_47750 ca3c9678f14838a943f13c945e64cb6c 222 SMART SM00448 7 119 8.5E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_47750 ca3c9678f14838a943f13c945e64cb6c 222 ProSitePatterns PS00622 LuxR-type HTH domain signature. 174 201 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_47750 ca3c9678f14838a943f13c945e64cb6c 222 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 160 174 8.3E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_47750 ca3c9678f14838a943f13c945e64cb6c 222 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 174 190 8.3E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_47750 ca3c9678f14838a943f13c945e64cb6c 222 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 190 202 8.3E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_47750 ca3c9678f14838a943f13c945e64cb6c 222 SUPERFAMILY SSF52172 6 185 2.87E-31 T 13-10-2018 IPR011006 CheY-like superfamily RAM_47750 ca3c9678f14838a943f13c945e64cb6c 222 Pfam PF00196 Bacterial regulatory proteins, luxR family 159 214 1.7E-19 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_47750 ca3c9678f14838a943f13c945e64cb6c 222 Pfam PF00072 Response regulator receiver domain 9 119 1.6E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_47750 ca3c9678f14838a943f13c945e64cb6c 222 SMART SM00421 157 214 3.2E-25 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_05080 4039e609474eb44b33e423177f5edece 202 SUPERFAMILY SSF53474 3 198 1.08E-13 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_46290 1d4c1de5d65091b037ceaa405c309d1f 272 PIRSF PIRSF000105 1 272 5.2E-73 T 13-10-2018 IPR022694 3-hydroxyacyl-CoA dehydrogenase GO:0003857|GO:0006631|GO:0055114|GO:0070403 RAM_46290 1d4c1de5d65091b037ceaa405c309d1f 272 Gene3D G3DSA:3.40.50.720 1 176 1.5E-55 T 13-10-2018 RAM_46290 1d4c1de5d65091b037ceaa405c309d1f 272 Gene3D G3DSA:1.10.1040.10 177 272 9.7E-31 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RAM_46290 1d4c1de5d65091b037ceaa405c309d1f 272 SUPERFAMILY SSF48179 175 271 3.06E-29 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RAM_46290 1d4c1de5d65091b037ceaa405c309d1f 272 SUPERFAMILY SSF51735 1 172 1.11E-43 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_46290 1d4c1de5d65091b037ceaa405c309d1f 272 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 175 271 9.7E-31 T 13-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RAM_46290 1d4c1de5d65091b037ceaa405c309d1f 272 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 1 172 1.4E-52 T 13-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RAM_06150 c15f548b36c7c4538d4582e90268746c 196 SUPERFAMILY SSF109854 4 166 4.88E-39 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_06150 c15f548b36c7c4538d4582e90268746c 196 Pfam PF04978 Protein of unknown function (DUF664) 15 167 7.5E-48 T 13-10-2018 IPR007061 Protein of unknown function DUF664 RAM_06150 c15f548b36c7c4538d4582e90268746c 196 Gene3D G3DSA:1.20.120.450 4 168 1.2E-38 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_43085 fdde9269437d600d3601a9e08b6e3767 347 SUPERFAMILY SSF51735 135 304 3.11E-36 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_43085 fdde9269437d600d3601a9e08b6e3767 347 Gene3D G3DSA:3.90.180.10 9 332 5.2E-80 T 13-10-2018 RAM_43085 fdde9269437d600d3601a9e08b6e3767 347 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 21 125 6.3E-28 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_43085 fdde9269437d600d3601a9e08b6e3767 347 Pfam PF00107 Zinc-binding dehydrogenase 171 302 5.6E-24 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RAM_43085 fdde9269437d600d3601a9e08b6e3767 347 SMART SM00829 1 343 0.006 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_43085 fdde9269437d600d3601a9e08b6e3767 347 SUPERFAMILY SSF50129 9 162 4.88E-42 T 13-10-2018 IPR011032 GroES-like superfamily RAM_43085 fdde9269437d600d3601a9e08b6e3767 347 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 54 68 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 RAM_43085 fdde9269437d600d3601a9e08b6e3767 347 Gene3D G3DSA:3.40.50.720 143 289 5.2E-80 T 13-10-2018 RAM_29110 3ca35d6c6a8114c985094b8236c6d7f7 147 ProDom PD080544 SYNTHASE 4.2.1.- LYASE L-ECTOINE DEHYDRATASE N-ACETYLDIAMINOBUTYRATE ECTOINE ENZYME SYNTHASE:ECTOINE ECTC 36 113 0.003 T 13-10-2018 IPR010462 Ectoine synthase GO:0019491|GO:0033990 KEGG: 00260+4.2.1.108 RAM_29110 3ca35d6c6a8114c985094b8236c6d7f7 147 Gene3D G3DSA:2.60.120.10 2 147 2.2E-34 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_29110 3ca35d6c6a8114c985094b8236c6d7f7 147 Pfam PF07883 Cupin domain 41 109 4.7E-18 T 13-10-2018 IPR013096 Cupin 2, conserved barrel RAM_29110 3ca35d6c6a8114c985094b8236c6d7f7 147 SUPERFAMILY SSF51182 24 122 4.46E-25 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RAM_05435 e5aed13c72dd10362073cd20f6d1dc96 508 Pfam PF13180 PDZ domain 422 505 4.0E-13 T 13-10-2018 IPR001478 PDZ domain GO:0005515 RAM_05435 e5aed13c72dd10362073cd20f6d1dc96 508 Gene3D G3DSA:2.30.42.10 419 508 3.1E-21 T 13-10-2018 RAM_05435 e5aed13c72dd10362073cd20f6d1dc96 508 Gene3D G3DSA:2.40.10.10 300 418 6.1E-41 T 13-10-2018 RAM_05435 e5aed13c72dd10362073cd20f6d1dc96 508 SUPERFAMILY SSF50494 207 418 7.88E-52 T 13-10-2018 IPR009003 Peptidase S1, PA clan RAM_05435 e5aed13c72dd10362073cd20f6d1dc96 508 Pfam PF13365 Trypsin-like peptidase domain 235 380 8.1E-32 T 13-10-2018 RAM_05435 e5aed13c72dd10362073cd20f6d1dc96 508 SMART SM00228 421 496 7.4E-8 T 13-10-2018 IPR001478 PDZ domain GO:0005515 RAM_05435 e5aed13c72dd10362073cd20f6d1dc96 508 Gene3D G3DSA:2.40.10.10 201 298 7.0E-26 T 13-10-2018 RAM_05435 e5aed13c72dd10362073cd20f6d1dc96 508 SUPERFAMILY SSF50156 392 496 4.73E-17 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 RAM_05435 e5aed13c72dd10362073cd20f6d1dc96 508 PRINTS PR00834 HtrA/DegQ protease family signature 244 256 2.1E-45 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAM_05435 e5aed13c72dd10362073cd20f6d1dc96 508 PRINTS PR00834 HtrA/DegQ protease family signature 373 390 2.1E-45 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAM_05435 e5aed13c72dd10362073cd20f6d1dc96 508 PRINTS PR00834 HtrA/DegQ protease family signature 270 290 2.1E-45 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAM_05435 e5aed13c72dd10362073cd20f6d1dc96 508 PRINTS PR00834 HtrA/DegQ protease family signature 310 334 2.1E-45 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAM_05435 e5aed13c72dd10362073cd20f6d1dc96 508 PRINTS PR00834 HtrA/DegQ protease family signature 454 466 2.1E-45 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAM_05435 e5aed13c72dd10362073cd20f6d1dc96 508 PRINTS PR00834 HtrA/DegQ protease family signature 351 368 2.1E-45 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAM_17700 35e88ac7866eb0ba12608d3b9c03546c 159 Gene3D G3DSA:3.30.530.20 5 153 5.2E-17 T 13-10-2018 IPR023393 START-like domain superfamily RAM_17700 35e88ac7866eb0ba12608d3b9c03546c 159 SUPERFAMILY SSF55961 5 151 2.09E-19 T 13-10-2018 RAM_17700 35e88ac7866eb0ba12608d3b9c03546c 159 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 5 151 2.2E-15 T 13-10-2018 IPR019587 Polyketide cyclase/dehydrase RAM_31470 ce3cf41337257028a7816b8817fbd887 323 Gene3D G3DSA:3.40.190.10 106 288 2.1E-13 T 13-10-2018 RAM_31470 ce3cf41337257028a7816b8817fbd887 323 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 1.4E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_31470 ce3cf41337257028a7816b8817fbd887 323 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 1.4E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_31470 ce3cf41337257028a7816b8817fbd887 323 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 1.4E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_31470 ce3cf41337257028a7816b8817fbd887 323 SUPERFAMILY SSF46785 4 86 6.66E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_31470 ce3cf41337257028a7816b8817fbd887 323 Pfam PF03466 LysR substrate binding domain 105 289 6.4E-11 T 13-10-2018 IPR005119 LysR, substrate-binding RAM_31470 ce3cf41337257028a7816b8817fbd887 323 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 8.7E-18 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_31470 ce3cf41337257028a7816b8817fbd887 323 SUPERFAMILY SSF53850 105 285 1.34E-14 T 13-10-2018 RAM_31470 ce3cf41337257028a7816b8817fbd887 323 Gene3D G3DSA:1.10.10.10 1 85 3.8E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_31470 ce3cf41337257028a7816b8817fbd887 323 Gene3D G3DSA:3.40.190.10 164 268 2.1E-13 T 13-10-2018 RAM_00005 a3b11c357a0ee215ff8a8be50d54a947 547 Gene3D G3DSA:1.10.8.60 373 443 2.2E-25 T 13-10-2018 RAM_00005 a3b11c357a0ee215ff8a8be50d54a947 547 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 9 542 32.768 T 13-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 RAM_00005 a3b11c357a0ee215ff8a8be50d54a947 547 Gene3D G3DSA:3.40.50.300 194 371 9.0E-53 T 13-10-2018 RAM_00005 a3b11c357a0ee215ff8a8be50d54a947 547 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 12 541 6.6E-154 T 13-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 RAM_00005 a3b11c357a0ee215ff8a8be50d54a947 547 SMART SM00760 451 520 6.1E-34 T 13-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 RAM_00005 a3b11c357a0ee215ff8a8be50d54a947 547 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 304 318 9.6E-52 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like RAM_00005 a3b11c357a0ee215ff8a8be50d54a947 547 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 272 286 9.6E-52 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like RAM_00005 a3b11c357a0ee215ff8a8be50d54a947 547 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 501 520 9.6E-52 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like RAM_00005 a3b11c357a0ee215ff8a8be50d54a947 547 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 240 260 9.6E-52 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like RAM_00005 a3b11c357a0ee215ff8a8be50d54a947 547 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 338 365 9.6E-52 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like RAM_00005 a3b11c357a0ee215ff8a8be50d54a947 547 SMART SM00382 239 367 4.8E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_00005 a3b11c357a0ee215ff8a8be50d54a947 547 SUPERFAMILY SSF48295 438 543 7.32E-35 T 13-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 RAM_00005 a3b11c357a0ee215ff8a8be50d54a947 547 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 454 520 8.9E-28 T 13-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 RAM_00005 a3b11c357a0ee215ff8a8be50d54a947 547 SUPERFAMILY SSF52540 206 418 2.82E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_00005 a3b11c357a0ee215ff8a8be50d54a947 547 Gene3D G3DSA:1.10.1750.10 447 547 1.3E-35 T 13-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 RAM_00005 a3b11c357a0ee215ff8a8be50d54a947 547 ProSitePatterns PS01008 DnaA protein signature. 501 520 - T 13-10-2018 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 RAM_00005 a3b11c357a0ee215ff8a8be50d54a947 547 Gene3D G3DSA:3.30.300.180 3 85 3.1E-7 T 13-10-2018 IPR038454 DnaA, N-terminal domain superfamily RAM_00005 a3b11c357a0ee215ff8a8be50d54a947 547 Pfam PF00308 Bacterial dnaA protein 207 424 2.7E-103 T 13-10-2018 IPR013317 Chromosomal replication initiator protein DnaA RAM_03360 865cf36e56c679ac3017e67da613714b 567 SUPERFAMILY SSF117074 182 238 2.35E-5 T 13-10-2018 RAM_03360 865cf36e56c679ac3017e67da613714b 567 Gene3D G3DSA:2.60.40.10 398 473 2.6E-7 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_03360 865cf36e56c679ac3017e67da613714b 567 SUPERFAMILY SSF117074 390 462 7.98E-8 T 13-10-2018 RAM_46465 ec52e57443481704b628882ae2bc4632 334 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 7 284 23.94 T 13-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RAM_46465 ec52e57443481704b628882ae2bc4632 334 SUPERFAMILY SSF56104 3 286 3.27E-91 T 13-10-2018 RAM_46465 ec52e57443481704b628882ae2bc4632 334 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 8 284 4.6E-61 T 13-10-2018 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234 RAM_46465 ec52e57443481704b628882ae2bc4632 334 Gene3D G3DSA:3.30.200.20 1 93 1.7E-29 T 13-10-2018 RAM_46465 ec52e57443481704b628882ae2bc4632 334 Pfam PF01259 SAICAR synthetase 10 257 3.0E-89 T 13-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RAM_46465 ec52e57443481704b628882ae2bc4632 334 ProSitePatterns PS01058 SAICAR synthetase signature 2. 194 202 - T 13-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RAM_46465 ec52e57443481704b628882ae2bc4632 334 Gene3D G3DSA:3.30.470.20 94 238 1.0E-51 T 13-10-2018 RAM_21125 adf312a8db0d4fb37bdcc97d00265eae 168 Pfam PF04978 Protein of unknown function (DUF664) 18 164 1.2E-45 T 13-10-2018 IPR007061 Protein of unknown function DUF664 RAM_21125 adf312a8db0d4fb37bdcc97d00265eae 168 SUPERFAMILY SSF109854 4 163 1.19E-41 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_21125 adf312a8db0d4fb37bdcc97d00265eae 168 Gene3D G3DSA:1.20.120.450 5 165 5.2E-35 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_22710 f88c765d414abd70768fc8d4a69d8022 319 SUPERFAMILY SSF53474 40 306 5.16E-67 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_22710 f88c765d414abd70768fc8d4a69d8022 319 Gene3D G3DSA:3.40.50.1820 2 318 2.0E-100 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_22710 f88c765d414abd70768fc8d4a69d8022 319 Pfam PF07859 alpha/beta hydrolase fold 83 289 7.0E-66 T 13-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 RAM_22710 f88c765d414abd70768fc8d4a69d8022 319 ProSitePatterns PS01173 Lipolytic enzymes "G-D-X-G" family, putative histidine active site. 83 99 - T 13-10-2018 IPR002168 Lipase, GDXG, putative histidine active site GO:0016787 Reactome: R-HSA-163560 RAM_12395 18fed3e1792aa74b619fc41bcdfc847e 413 Gene3D G3DSA:3.40.640.10 54 298 9.3E-173 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_12395 18fed3e1792aa74b619fc41bcdfc847e 413 Pfam PF12897 Alanine-glyoxylate amino-transferase 8 411 1.8E-180 T 13-10-2018 IPR024551 Aminotransferase, putative RAM_12395 18fed3e1792aa74b619fc41bcdfc847e 413 Gene3D G3DSA:3.90.1150.10 15 408 9.3E-173 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_12395 18fed3e1792aa74b619fc41bcdfc847e 413 SUPERFAMILY SSF53383 54 405 4.94E-50 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_20845 d8283b05574d109424470b3164fe2fa2 122 SUPERFAMILY SSF54909 34 109 1.7E-11 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_20845 d8283b05574d109424470b3164fe2fa2 122 Pfam PF07045 Domain of unknown function (DUF1330) 35 108 6.3E-7 T 13-10-2018 IPR010753 Domain of unknown function DUF1330 RAM_20845 d8283b05574d109424470b3164fe2fa2 122 Gene3D G3DSA:3.30.70.100 1 121 2.2E-35 T 13-10-2018 RAM_04540 87985de22a83ff0a3164dd3b00250e4e 133 SMART SM00422 3 72 6.6E-21 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_04540 87985de22a83ff0a3164dd3b00250e4e 133 Gene3D G3DSA:1.10.1660.10 1 124 7.3E-33 T 13-10-2018 RAM_04540 87985de22a83ff0a3164dd3b00250e4e 133 Pfam PF13411 MerR HTH family regulatory protein 3 69 2.7E-16 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_04540 87985de22a83ff0a3164dd3b00250e4e 133 SUPERFAMILY SSF46955 3 114 3.22E-29 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily RAM_04540 87985de22a83ff0a3164dd3b00250e4e 133 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 39 59 9.0E-6 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_04540 87985de22a83ff0a3164dd3b00250e4e 133 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 15 28 9.0E-6 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_04540 87985de22a83ff0a3164dd3b00250e4e 133 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 4 15 9.0E-6 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_36070 015f88f5744f9d87f1675f6bb69fa55c 380 Pfam PF02653 Branched-chain amino acid transport system / permease component 57 355 2.4E-29 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 RAM_43005 359d105b1faf46675e8d7bcb6e93fbad 395 SUPERFAMILY SSF53067 84 385 3.94E-47 T 13-10-2018 RAM_43005 359d105b1faf46675e8d7bcb6e93fbad 395 Gene3D G3DSA:3.30.420.40 91 380 6.5E-62 T 13-10-2018 RAM_43005 359d105b1faf46675e8d7bcb6e93fbad 395 Gene3D G3DSA:3.30.420.40 205 370 6.5E-62 T 13-10-2018 RAM_43005 359d105b1faf46675e8d7bcb6e93fbad 395 Gene3D G3DSA:1.10.10.10 3 79 3.9E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_43005 359d105b1faf46675e8d7bcb6e93fbad 395 SUPERFAMILY SSF46785 12 75 9.25E-15 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_43005 359d105b1faf46675e8d7bcb6e93fbad 395 Pfam PF00480 ROK family 86 382 1.5E-42 T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 RAM_09835 f379366263a2030e857345e75df6a922 208 Pfam PF11575 FhuF 2Fe-2S C-terminal domain 174 193 3.1E-5 T 13-10-2018 IPR024726 Ferric iron reductase, C-terminal GO:0051537 RAM_39270 9303aff8c90be22fc6a7e7bfb88dc9ab 240 Gene3D G3DSA:2.30.110.10 1 101 2.2E-34 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_39270 9303aff8c90be22fc6a7e7bfb88dc9ab 240 Pfam PF04075 F420H(2)-dependent quinone reductase 1 98 3.8E-26 T 13-10-2018 IPR004378 F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 RAM_39270 9303aff8c90be22fc6a7e7bfb88dc9ab 240 Gene3D G3DSA:1.20.120.520 102 239 7.9E-20 T 13-10-2018 RAM_39270 9303aff8c90be22fc6a7e7bfb88dc9ab 240 TIGRFAM TIGR00026 hi_GC_TIGR00026: deazaflavin-dependent oxidoreductase, nitroreductase family 1 100 9.3E-23 T 13-10-2018 IPR004378 F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 RAM_39270 9303aff8c90be22fc6a7e7bfb88dc9ab 240 Pfam PF01814 Hemerythrin HHE cation binding domain 112 232 3.3E-14 T 13-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 RAM_19730 c5a38c126a46d8f70b1d3bb87f596881 464 SUPERFAMILY SSF53720 126 452 1.31E-10 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RAM_19730 c5a38c126a46d8f70b1d3bb87f596881 464 Pfam PF05893 Acyl-CoA reductase (LuxC) 57 459 3.0E-76 T 13-10-2018 IPR008670 Long-chain-fatty-acyl-CoA reductase, LuxC GO:0003995|GO:0008218|GO:0055114 KEGG: 00073+1.2.1.50|MetaCyc: PWY-7723 RAM_12935 fa75f245fe1b85ba0f0e763184386c08 354 SUPERFAMILY SSF54909 237 315 1.61E-5 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_12935 fa75f245fe1b85ba0f0e763184386c08 354 Gene3D G3DSA:1.10.10.10 7 53 2.3E-5 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_12935 fa75f245fe1b85ba0f0e763184386c08 354 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 177 193 4.3E-5 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_12935 fa75f245fe1b85ba0f0e763184386c08 354 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 193 204 4.3E-5 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_12935 fa75f245fe1b85ba0f0e763184386c08 354 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 204 223 4.3E-5 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_12935 fa75f245fe1b85ba0f0e763184386c08 354 Gene3D G3DSA:3.30.70.920 233 318 9.3E-6 T 13-10-2018 RAM_12935 fa75f245fe1b85ba0f0e763184386c08 354 SUPERFAMILY SSF46785 173 227 7.49E-6 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_12935 fa75f245fe1b85ba0f0e763184386c08 354 Gene3D G3DSA:3.30.70.920 71 143 3.6E-14 T 13-10-2018 RAM_12935 fa75f245fe1b85ba0f0e763184386c08 354 Gene3D G3DSA:1.10.10.10 175 225 4.3E-9 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_12935 fa75f245fe1b85ba0f0e763184386c08 354 SMART SM00344 177 282 3.3E-8 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RAM_12935 fa75f245fe1b85ba0f0e763184386c08 354 Pfam PF13404 AsnC-type helix-turn-helix domain 178 216 1.4E-8 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_12935 fa75f245fe1b85ba0f0e763184386c08 354 SUPERFAMILY SSF54909 71 141 6.57E-11 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_12935 fa75f245fe1b85ba0f0e763184386c08 354 Pfam PF01037 Lrp/AsnC ligand binding domain 73 140 2.3E-8 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RAM_32635 c144233f6c5d8abbb638a0d37f9a477a 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 61 2.7E-22 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_32635 c144233f6c5d8abbb638a0d37f9a477a 301 SUPERFAMILY SSF46785 1 81 1.09E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_32635 c144233f6c5d8abbb638a0d37f9a477a 301 Gene3D G3DSA:3.40.190.10 163 270 1.9E-18 T 13-10-2018 RAM_32635 c144233f6c5d8abbb638a0d37f9a477a 301 Gene3D G3DSA:1.10.10.10 1 84 5.8E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_32635 c144233f6c5d8abbb638a0d37f9a477a 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 4.9E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_32635 c144233f6c5d8abbb638a0d37f9a477a 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 4.9E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_32635 c144233f6c5d8abbb638a0d37f9a477a 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 4.9E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_32635 c144233f6c5d8abbb638a0d37f9a477a 301 SUPERFAMILY SSF53850 90 298 7.14E-19 T 13-10-2018 RAM_32635 c144233f6c5d8abbb638a0d37f9a477a 301 Gene3D G3DSA:3.40.190.10 126 289 1.9E-18 T 13-10-2018 RAM_32635 c144233f6c5d8abbb638a0d37f9a477a 301 Pfam PF03466 LysR substrate binding domain 127 294 1.2E-17 T 13-10-2018 IPR005119 LysR, substrate-binding RAM_30395 b5cc3a787309cc36088bbb585f99b236 171 SUPERFAMILY SSF55068 3 163 8.37E-65 T 13-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 RAM_30395 b5cc3a787309cc36088bbb585f99b236 171 Gene3D G3DSA:3.30.1060.10 1 167 7.1E-72 T 13-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 RAM_30395 b5cc3a787309cc36088bbb585f99b236 171 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 7 154 6.1E-50 T 13-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 RAM_30395 b5cc3a787309cc36088bbb585f99b236 171 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 5 160 34.568 T 13-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 RAM_30395 b5cc3a787309cc36088bbb585f99b236 171 Pfam PF01625 Peptide methionine sulfoxide reductase 8 154 4.8E-57 T 13-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 RAM_19855 b6406a55619f2b32fb2f9e4cad9e677d 604 Gene3D G3DSA:1.50.10.10 229 603 1.8E-82 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 RAM_19855 b6406a55619f2b32fb2f9e4cad9e677d 604 SUPERFAMILY SSF48208 203 603 5.35E-94 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_19855 b6406a55619f2b32fb2f9e4cad9e677d 604 Pfam PF00723 Glycosyl hydrolases family 15 230 596 4.6E-52 T 13-10-2018 IPR011613 GH15-like domain Reactome: R-HSA-70221 RAM_24415 b354723ab8f9d2f1fa26bf14ba143163 348 Gene3D G3DSA:3.40.50.720 147 314 5.9E-89 T 13-10-2018 RAM_24415 b354723ab8f9d2f1fa26bf14ba143163 348 Gene3D G3DSA:3.30.1780.10 32 333 5.9E-89 T 13-10-2018 IPR023401 Ornithine cyclodeaminase, N-terminal Reactome: R-HSA-71064 RAM_24415 b354723ab8f9d2f1fa26bf14ba143163 348 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 35 331 3.0E-37 T 13-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 RAM_24415 b354723ab8f9d2f1fa26bf14ba143163 348 TIGRFAM TIGR03944 dehyd_SbnB_fam: 2,3-diaminopropionate biosynthesis protein SbnB 18 334 1.1E-122 T 13-10-2018 IPR023866 2,3-diaminopropionate biosynthesis protein SbnB RAM_24415 b354723ab8f9d2f1fa26bf14ba143163 348 PIRSF PIRSF001439 10 338 5.4E-75 T 13-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 RAM_24415 b354723ab8f9d2f1fa26bf14ba143163 348 SUPERFAMILY SSF51735 17 337 1.13E-65 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_08560 79b0b511f67387bd43fde02c5e8f3116 598 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 429 448 - T 13-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 RAM_08560 79b0b511f67387bd43fde02c5e8f3116 598 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 4 568 3.0E-235 T 13-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 RAM_08560 79b0b511f67387bd43fde02c5e8f3116 598 SUPERFAMILY SSF52467 186 359 8.78E-64 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily RAM_08560 79b0b511f67387bd43fde02c5e8f3116 598 Gene3D G3DSA:3.40.50.970 1 177 2.2E-68 T 13-10-2018 RAM_08560 79b0b511f67387bd43fde02c5e8f3116 598 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 392 545 1.4E-49 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RAM_08560 79b0b511f67387bd43fde02c5e8f3116 598 SUPERFAMILY SSF52518 369 574 1.04E-67 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_08560 79b0b511f67387bd43fde02c5e8f3116 598 Gene3D G3DSA:3.40.50.970 364 574 2.3E-70 T 13-10-2018 RAM_08560 79b0b511f67387bd43fde02c5e8f3116 598 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 193 328 3.9E-50 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 RAM_08560 79b0b511f67387bd43fde02c5e8f3116 598 Gene3D G3DSA:3.40.50.1220 188 358 2.7E-66 T 13-10-2018 RAM_08560 79b0b511f67387bd43fde02c5e8f3116 598 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4 168 3.7E-55 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RAM_08560 79b0b511f67387bd43fde02c5e8f3116 598 SUPERFAMILY SSF52518 2 182 6.31E-60 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_24145 73caf8d394e9d87adb0a609313c24e7a 950 SMART SM00862 31 110 1.9E-14 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_24145 73caf8d394e9d87adb0a609313c24e7a 950 SUPERFAMILY SSF48452 774 934 4.17E-19 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_24145 73caf8d394e9d87adb0a609313c24e7a 950 Gene3D G3DSA:1.10.10.10 8 112 3.2E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_24145 73caf8d394e9d87adb0a609313c24e7a 950 SUPERFAMILY SSF46894 18 110 2.01E-13 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_24145 73caf8d394e9d87adb0a609313c24e7a 950 SMART SM00028 899 932 2.4 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_24145 73caf8d394e9d87adb0a609313c24e7a 950 SMART SM00028 819 852 0.39 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_24145 73caf8d394e9d87adb0a609313c24e7a 950 SMART SM00028 859 892 53.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_24145 73caf8d394e9d87adb0a609313c24e7a 950 SMART SM00028 779 812 390.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_24145 73caf8d394e9d87adb0a609313c24e7a 950 SMART SM00028 739 772 12.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_24145 73caf8d394e9d87adb0a609313c24e7a 950 SUPERFAMILY SSF48452 113 277 1.27E-34 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_24145 73caf8d394e9d87adb0a609313c24e7a 950 Pfam PF03704 Bacterial transcriptional activator domain 117 261 3.2E-39 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_24145 73caf8d394e9d87adb0a609313c24e7a 950 PRINTS PR00364 Disease resistance protein signature 401 415 1.3E-8 T 13-10-2018 RAM_24145 73caf8d394e9d87adb0a609313c24e7a 950 PRINTS PR00364 Disease resistance protein signature 322 337 1.3E-8 T 13-10-2018 RAM_24145 73caf8d394e9d87adb0a609313c24e7a 950 PRINTS PR00364 Disease resistance protein signature 486 500 1.3E-8 T 13-10-2018 RAM_24145 73caf8d394e9d87adb0a609313c24e7a 950 Gene3D G3DSA:3.40.50.300 283 447 1.2E-24 T 13-10-2018 RAM_24145 73caf8d394e9d87adb0a609313c24e7a 950 Gene3D G3DSA:1.25.40.10 678 948 3.4E-37 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_24145 73caf8d394e9d87adb0a609313c24e7a 950 SMART SM01043 117 261 3.4E-47 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_24145 73caf8d394e9d87adb0a609313c24e7a 950 Gene3D G3DSA:1.25.40.10 116 282 4.1E-46 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_24145 73caf8d394e9d87adb0a609313c24e7a 950 SUPERFAMILY SSF48452 709 808 2.78E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_24145 73caf8d394e9d87adb0a609313c24e7a 950 Pfam PF00486 Transcriptional regulatory protein, C terminal 39 109 6.2E-10 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_24145 73caf8d394e9d87adb0a609313c24e7a 950 Pfam PF00931 NB-ARC domain 323 556 1.5E-10 T 13-10-2018 IPR002182 NB-ARC GO:0043531 Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-6798695|Reactome: R-HSA-6803207|Reactome: R-HSA-8953750 RAM_24145 73caf8d394e9d87adb0a609313c24e7a 950 SUPERFAMILY SSF52540 287 554 7.53E-26 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_02830 5ce3b8801ac4b3a872aef3b63847a42b 725 Gene3D G3DSA:3.90.180.10 1 166 8.5E-22 T 13-10-2018 RAM_02830 5ce3b8801ac4b3a872aef3b63847a42b 725 Gene3D G3DSA:3.30.360.10 525 711 3.8E-27 T 13-10-2018 RAM_02830 5ce3b8801ac4b3a872aef3b63847a42b 725 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 405 525 1.3E-21 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 RAM_02830 5ce3b8801ac4b3a872aef3b63847a42b 725 Gene3D G3DSA:3.40.50.720 387 518 7.3E-28 T 13-10-2018 RAM_02830 5ce3b8801ac4b3a872aef3b63847a42b 725 SUPERFAMILY SSF51735 394 570 8.74E-39 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_02830 5ce3b8801ac4b3a872aef3b63847a42b 725 SUPERFAMILY SSF50129 7 180 1.53E-18 T 13-10-2018 IPR011032 GroES-like superfamily RAM_02830 5ce3b8801ac4b3a872aef3b63847a42b 725 Pfam PF00107 Zinc-binding dehydrogenase 182 296 1.2E-11 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RAM_02830 5ce3b8801ac4b3a872aef3b63847a42b 725 SUPERFAMILY SSF55347 558 683 5.23E-8 T 13-10-2018 RAM_02830 5ce3b8801ac4b3a872aef3b63847a42b 725 SUPERFAMILY SSF51735 149 299 7.19E-24 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_02830 5ce3b8801ac4b3a872aef3b63847a42b 725 Gene3D G3DSA:3.40.50.720 167 290 2.2E-19 T 13-10-2018 RAM_43500 e4984dfc6acab8d152bcc8abb62f9008 501 Pfam PF04107 Glutamate-cysteine ligase family 2(GCS2) 197 253 5.7E-5 T 13-10-2018 IPR006336 Glutamate--cysteine ligase, GCS2 GO:0004357|GO:0042398 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 RAM_43500 e4984dfc6acab8d152bcc8abb62f9008 501 SUPERFAMILY SSF55931 41 466 2.26E-52 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 RAM_43500 e4984dfc6acab8d152bcc8abb62f9008 501 Gene3D G3DSA:3.30.590.20 42 471 3.2E-58 T 13-10-2018 RAM_43500 e4984dfc6acab8d152bcc8abb62f9008 501 PIRSF PIRSF012666 1 500 5.6E-206 T 13-10-2018 IPR016602 Uncharacterised conserved protein UCP012666 RAM_26340 9c92f66f3e18af4869c308143bfb68ee 490 PRINTS PR00195 Dynamin signature 38 56 2.1E-5 T 13-10-2018 IPR022812 Dynamin superfamily RAM_26340 9c92f66f3e18af4869c308143bfb68ee 490 PRINTS PR00195 Dynamin signature 194 210 2.1E-5 T 13-10-2018 IPR022812 Dynamin superfamily RAM_26340 9c92f66f3e18af4869c308143bfb68ee 490 PRINTS PR00195 Dynamin signature 127 144 2.1E-5 T 13-10-2018 IPR022812 Dynamin superfamily RAM_26340 9c92f66f3e18af4869c308143bfb68ee 490 SUPERFAMILY SSF52540 35 223 1.18E-22 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_26340 9c92f66f3e18af4869c308143bfb68ee 490 Gene3D G3DSA:3.40.50.300 41 268 1.4E-21 T 13-10-2018 RAM_26340 9c92f66f3e18af4869c308143bfb68ee 490 Pfam PF01926 50S ribosome-binding GTPase 40 175 3.8E-10 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 RAM_46015 1517157f95f4d054267411ac62f58e49 275 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 85 260 4.9E-13 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_46015 1517157f95f4d054267411ac62f58e49 275 Gene3D G3DSA:1.10.3720.10 6 261 9.7E-45 T 13-10-2018 IPR035906 MetI-like superfamily RAM_46015 1517157f95f4d054267411ac62f58e49 275 SUPERFAMILY SSF161098 7 263 2.62E-49 T 13-10-2018 IPR035906 MetI-like superfamily RAM_37145 246e24daa654647ae392e05cda41b2da 337 Gene3D G3DSA:3.90.180.10 16 320 5.2E-75 T 13-10-2018 RAM_37145 246e24daa654647ae392e05cda41b2da 337 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 89 4.2E-16 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_37145 246e24daa654647ae392e05cda41b2da 337 SMART SM00829 10 334 0.0082 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_37145 246e24daa654647ae392e05cda41b2da 337 SUPERFAMILY SSF51735 128 296 1.17E-33 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_37145 246e24daa654647ae392e05cda41b2da 337 SUPERFAMILY SSF50129 1 160 1.98E-37 T 13-10-2018 IPR011032 GroES-like superfamily RAM_37145 246e24daa654647ae392e05cda41b2da 337 Gene3D G3DSA:3.40.50.720 139 282 5.2E-75 T 13-10-2018 RAM_37145 246e24daa654647ae392e05cda41b2da 337 Pfam PF00107 Zinc-binding dehydrogenase 161 290 2.4E-17 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RAM_37145 246e24daa654647ae392e05cda41b2da 337 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 59 73 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 RAM_22855 a08c6fda2a98720e8b47430fbfbd0653 329 Pfam PF02698 DUF218 domain 160 301 2.3E-33 T 13-10-2018 IPR003848 Domain of unknown function DUF218 RAM_10620 dcfe0813a90c739e90fcd54f4d136908 219 Pfam PF00440 Bacterial regulatory proteins, tetR family 33 75 2.6E-12 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_10620 dcfe0813a90c739e90fcd54f4d136908 219 Gene3D G3DSA:1.10.10.60 20 69 7.5E-23 T 13-10-2018 RAM_10620 dcfe0813a90c739e90fcd54f4d136908 219 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 46 9.1E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_10620 dcfe0813a90c739e90fcd54f4d136908 219 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 54 77 9.1E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_10620 dcfe0813a90c739e90fcd54f4d136908 219 SUPERFAMILY SSF46689 22 94 3.25E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_10620 dcfe0813a90c739e90fcd54f4d136908 219 Gene3D G3DSA:1.10.357.10 70 219 4.6E-51 T 13-10-2018 RAM_04340 3d0f9a95cdc5416f6cdb8c81ee4743dc 584 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 40 49 - T 13-10-2018 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_04340 3d0f9a95cdc5416f6cdb8c81ee4743dc 584 SUPERFAMILY SSF56425 237 355 1.26E-42 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_04340 3d0f9a95cdc5416f6cdb8c81ee4743dc 584 SUPERFAMILY SSF46977 447 584 6.67E-49 T 13-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_04340 3d0f9a95cdc5416f6cdb8c81ee4743dc 584 TIGRFAM TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit 4 584 1.1E-288 T 13-10-2018 IPR011281 Succinate dehydrogenase, flavoprotein subunit GO:0006099|GO:0016627|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_04340 3d0f9a95cdc5416f6cdb8c81ee4743dc 584 Gene3D G3DSA:3.90.700.10 247 350 2.9E-158 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_04340 3d0f9a95cdc5416f6cdb8c81ee4743dc 584 PIRSF PIRSF000171 1 574 6.8E-48 T 13-10-2018 RAM_04340 3d0f9a95cdc5416f6cdb8c81ee4743dc 584 Pfam PF00890 FAD binding domain 7 401 6.8E-112 T 13-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_04340 3d0f9a95cdc5416f6cdb8c81ee4743dc 584 Gene3D G3DSA:4.10.80.40 543 580 1.6E-6 T 13-10-2018 RAM_04340 3d0f9a95cdc5416f6cdb8c81ee4743dc 584 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 379 386 1.1E-5 T 13-10-2018 RAM_04340 3d0f9a95cdc5416f6cdb8c81ee4743dc 584 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 1.1E-5 T 13-10-2018 RAM_04340 3d0f9a95cdc5416f6cdb8c81ee4743dc 584 SUPERFAMILY SSF51905 2 426 7.63E-73 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_04340 3d0f9a95cdc5416f6cdb8c81ee4743dc 584 Gene3D G3DSA:1.20.58.100 429 542 1.0E-36 T 13-10-2018 RAM_04340 3d0f9a95cdc5416f6cdb8c81ee4743dc 584 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 7 584 3.6E-250 T 13-10-2018 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_04340 3d0f9a95cdc5416f6cdb8c81ee4743dc 584 Pfam PF02910 Fumarate reductase flavoprotein C-term 455 584 9.1E-46 T 13-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_04340 3d0f9a95cdc5416f6cdb8c81ee4743dc 584 Gene3D G3DSA:3.50.50.60 7 412 2.9E-158 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_26555 907106c117fcaa75ec281e0b823783ec 263 Pfam PF04545 Sigma-70, region 4 208 256 1.1E-16 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 RAM_26555 907106c117fcaa75ec281e0b823783ec 263 Gene3D G3DSA:1.20.120.1810 3 110 3.3E-16 T 13-10-2018 RAM_26555 907106c117fcaa75ec281e0b823783ec 263 Gene3D G3DSA:1.10.10.10 185 261 2.9E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_26555 907106c117fcaa75ec281e0b823783ec 263 Pfam PF04542 Sigma-70 region 2 42 111 1.1E-16 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_26555 907106c117fcaa75ec281e0b823783ec 263 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 39 259 7.4E-34 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_26555 907106c117fcaa75ec281e0b823783ec 263 SUPERFAMILY SSF88946 11 111 1.03E-27 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_26555 907106c117fcaa75ec281e0b823783ec 263 Pfam PF04539 Sigma-70 region 3 127 193 4.9E-14 T 13-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 RAM_26555 907106c117fcaa75ec281e0b823783ec 263 SUPERFAMILY SSF88659 115 189 7.41E-15 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_26555 907106c117fcaa75ec281e0b823783ec 263 TIGRFAM TIGR02980 SigBFG: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily 38 259 4.1E-89 T 13-10-2018 IPR014322 RNA polymerase sigma-B/F/G type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_26555 907106c117fcaa75ec281e0b823783ec 263 Gene3D G3DSA:1.10.10.10 112 164 5.4E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_26555 907106c117fcaa75ec281e0b823783ec 263 SUPERFAMILY SSF88659 185 259 8.97E-17 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_26555 907106c117fcaa75ec281e0b823783ec 263 PRINTS PR00046 Major sigma-70 factor signature 212 224 6.6E-8 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RAM_26555 907106c117fcaa75ec281e0b823783ec 263 PRINTS PR00046 Major sigma-70 factor signature 244 255 6.6E-8 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RAM_26555 907106c117fcaa75ec281e0b823783ec 263 PRINTS PR00046 Major sigma-70 factor signature 229 244 6.6E-8 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RAM_26555 907106c117fcaa75ec281e0b823783ec 263 PRINTS PR00046 Major sigma-70 factor signature 66 79 6.6E-8 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RAM_12100 d003510ec76911ef32c72815045a0ecf 369 Gene3D G3DSA:3.50.50.60 1 364 7.4E-112 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_12100 d003510ec76911ef32c72815045a0ecf 369 Pfam PF01494 FAD binding domain 2 159 5.3E-11 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_12100 d003510ec76911ef32c72815045a0ecf 369 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 283 298 1.3E-15 T 13-10-2018 RAM_12100 d003510ec76911ef32c72815045a0ecf 369 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 2 24 1.3E-15 T 13-10-2018 RAM_12100 d003510ec76911ef32c72815045a0ecf 369 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 140 155 1.3E-15 T 13-10-2018 RAM_12100 d003510ec76911ef32c72815045a0ecf 369 SUPERFAMILY SSF51905 2 361 1.08E-44 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_39050 77ee5f4115a20ce4ae966fb43ddf1b1e 393 SUPERFAMILY SSF53474 80 384 5.88E-19 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_39050 77ee5f4115a20ce4ae966fb43ddf1b1e 393 PIRSF PIRSF029171 1 393 7.1E-70 T 13-10-2018 IPR005152 Lipase, secreted GO:0004806|GO:0016042 RAM_39050 77ee5f4115a20ce4ae966fb43ddf1b1e 393 Gene3D G3DSA:3.40.50.1820 33 383 9.3E-102 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_39050 77ee5f4115a20ce4ae966fb43ddf1b1e 393 Pfam PF03583 Secretory lipase 132 390 3.5E-55 T 13-10-2018 IPR005152 Lipase, secreted GO:0004806|GO:0016042 RAM_39050 77ee5f4115a20ce4ae966fb43ddf1b1e 393 Gene3D G3DSA:1.10.260.130 227 318 9.3E-102 T 13-10-2018 RAM_36195 b4d46c1dab1d27b4eb1022ba85163cfe 646 SUPERFAMILY SSF53300 467 590 1.26E-21 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RAM_36195 b4d46c1dab1d27b4eb1022ba85163cfe 646 Gene3D G3DSA:1.10.8.80 246 336 4.1E-32 T 13-10-2018 RAM_36195 b4d46c1dab1d27b4eb1022ba85163cfe 646 Gene3D G3DSA:3.40.50.410 465 640 4.6E-22 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RAM_36195 b4d46c1dab1d27b4eb1022ba85163cfe 646 SMART SM00327 464 639 6.7E-16 T 13-10-2018 IPR002035 von Willebrand factor, type A RAM_36195 b4d46c1dab1d27b4eb1022ba85163cfe 646 Gene3D G3DSA:3.40.50.300 2 201 7.7E-57 T 13-10-2018 RAM_36195 b4d46c1dab1d27b4eb1022ba85163cfe 646 SUPERFAMILY SSF52540 2 325 3.92E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_36195 b4d46c1dab1d27b4eb1022ba85163cfe 646 Pfam PF13519 von Willebrand factor type A domain 467 573 2.8E-14 T 13-10-2018 IPR002035 von Willebrand factor, type A RAM_36195 b4d46c1dab1d27b4eb1022ba85163cfe 646 SMART SM00382 27 204 2.9E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_36195 b4d46c1dab1d27b4eb1022ba85163cfe 646 TIGRFAM TIGR02442 Cob-chelat-sub: cobaltochelatase subunit 4 626 3.4E-238 T 13-10-2018 IPR012804 Cobaltochelatase subunit, putative RAM_36195 b4d46c1dab1d27b4eb1022ba85163cfe 646 Pfam PF01078 Magnesium chelatase, subunit ChlI 111 181 2.7E-8 T 13-10-2018 IPR000523 Magnesium chelatase ChlI domain RAM_43415 f6b061c24dd618f91b7343a9c0b5fd93 206 ProSitePatterns PS00622 LuxR-type HTH domain signature. 159 186 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_43415 f6b061c24dd618f91b7343a9c0b5fd93 206 SMART SM00448 2 115 2.8E-31 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_43415 f6b061c24dd618f91b7343a9c0b5fd93 206 SMART SM00421 142 199 4.2E-24 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_43415 f6b061c24dd618f91b7343a9c0b5fd93 206 Pfam PF00072 Response regulator receiver domain 4 116 1.1E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_43415 f6b061c24dd618f91b7343a9c0b5fd93 206 Pfam PF00196 Bacterial regulatory proteins, luxR family 144 198 2.1E-18 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_43415 f6b061c24dd618f91b7343a9c0b5fd93 206 Gene3D G3DSA:3.40.50.12740 2 205 1.8E-71 T 13-10-2018 RAM_43415 f6b061c24dd618f91b7343a9c0b5fd93 206 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 175 187 2.3E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_43415 f6b061c24dd618f91b7343a9c0b5fd93 206 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 159 175 2.3E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_43415 f6b061c24dd618f91b7343a9c0b5fd93 206 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 145 159 2.3E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_43415 f6b061c24dd618f91b7343a9c0b5fd93 206 SUPERFAMILY SSF52172 2 133 8.68E-36 T 13-10-2018 IPR011006 CheY-like superfamily RAM_43415 f6b061c24dd618f91b7343a9c0b5fd93 206 SUPERFAMILY SSF46894 138 205 7.82E-20 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_42065 1f314d72132af1921c3af3b29bd809af 345 Pfam PF00005 ABC transporter 47 198 9.3E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_42065 1f314d72132af1921c3af3b29bd809af 345 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 248 337 3.1E-28 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RAM_42065 1f314d72132af1921c3af3b29bd809af 345 ProSitePatterns PS00211 ABC transporters family signature. 171 185 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_42065 1f314d72132af1921c3af3b29bd809af 345 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 250 317 8.9E-17 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RAM_42065 1f314d72132af1921c3af3b29bd809af 345 SUPERFAMILY SSF52540 55 335 1.89E-75 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_42065 1f314d72132af1921c3af3b29bd809af 345 Gene3D G3DSA:3.40.50.300 16 344 5.9E-106 T 13-10-2018 RAM_42065 1f314d72132af1921c3af3b29bd809af 345 SMART SM00382 55 248 6.4E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_20980 a0a2ab5f3c8e837c5d6b79d41957b87e 313 SUPERFAMILY SSF47240 4 305 1.12E-82 T 13-10-2018 IPR009078 Ferritin-like superfamily RAM_20980 a0a2ab5f3c8e837c5d6b79d41957b87e 313 PIRSF PIRSF000346 1 311 4.3E-99 T 13-10-2018 IPR005067 Fatty acid desaturase, type 2 GO:0006631|GO:0045300|GO:0055114 RAM_20980 a0a2ab5f3c8e837c5d6b79d41957b87e 313 Gene3D G3DSA:1.10.620.20 2 272 1.6E-110 T 13-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 RAM_20980 a0a2ab5f3c8e837c5d6b79d41957b87e 313 Pfam PF03405 Fatty acid desaturase 7 304 3.8E-75 T 13-10-2018 IPR005067 Fatty acid desaturase, type 2 GO:0006631|GO:0045300|GO:0055114 RAM_22480 81e46724268cfba0d564c933d6dabf52 504 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 5 255 2.9E-70 T 13-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 RAM_22480 81e46724268cfba0d564c933d6dabf52 504 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 366 386 - T 13-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 RAM_22480 81e46724268cfba0d564c933d6dabf52 504 Gene3D G3DSA:3.30.420.40 3 256 2.6E-103 T 13-10-2018 RAM_22480 81e46724268cfba0d564c933d6dabf52 504 Gene3D G3DSA:3.30.420.40 257 504 2.5E-95 T 13-10-2018 RAM_22480 81e46724268cfba0d564c933d6dabf52 504 PIRSF PIRSF000538 3 504 3.7E-160 T 13-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 RAM_22480 81e46724268cfba0d564c933d6dabf52 504 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 134 146 - T 13-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 RAM_22480 81e46724268cfba0d564c933d6dabf52 504 SUPERFAMILY SSF53067 258 501 3.54E-85 T 13-10-2018 RAM_22480 81e46724268cfba0d564c933d6dabf52 504 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 4 500 2.1E-226 T 13-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 RAM_22480 81e46724268cfba0d564c933d6dabf52 504 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 264 454 1.9E-68 T 13-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 RAM_22480 81e46724268cfba0d564c933d6dabf52 504 Hamap MF_00186 Glycerol kinase [glpK]. 2 501 55.376 T 13-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 RAM_22480 81e46724268cfba0d564c933d6dabf52 504 SUPERFAMILY SSF53067 4 258 1.62E-85 T 13-10-2018 RAM_37330 e9865e78f122deb9375ff9f0ae9a532c 815 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 316 679 1.8E-52 T 13-10-2018 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 RAM_37330 e9865e78f122deb9375ff9f0ae9a532c 815 Gene3D G3DSA:2.60.120.260 379 537 4.1E-198 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_37330 e9865e78f122deb9375ff9f0ae9a532c 815 Gene3D G3DSA:2.60.40.10 704 813 1.4E-24 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_37330 e9865e78f122deb9375ff9f0ae9a532c 815 Gene3D G3DSA:3.20.20.300 15 682 4.1E-198 T 13-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 RAM_37330 e9865e78f122deb9375ff9f0ae9a532c 815 SMART SM01217 732 799 4.5E-21 T 13-10-2018 IPR026891 Fibronectin type III-like domain RAM_37330 e9865e78f122deb9375ff9f0ae9a532c 815 SUPERFAMILY SSF51445 9 296 5.58E-81 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_37330 e9865e78f122deb9375ff9f0ae9a532c 815 Gene3D G3DSA:3.40.50.1700 295 638 4.1E-198 T 13-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 RAM_37330 e9865e78f122deb9375ff9f0ae9a532c 815 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 42 283 7.2E-47 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_37330 e9865e78f122deb9375ff9f0ae9a532c 815 SUPERFAMILY SSF52279 316 702 1.26E-47 T 13-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 RAM_37330 e9865e78f122deb9375ff9f0ae9a532c 815 PRINTS PR00133 Glycosyl hydrolase family 3 signature 41 57 1.8E-27 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_37330 e9865e78f122deb9375ff9f0ae9a532c 815 PRINTS PR00133 Glycosyl hydrolase family 3 signature 116 132 1.8E-27 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_37330 e9865e78f122deb9375ff9f0ae9a532c 815 PRINTS PR00133 Glycosyl hydrolase family 3 signature 216 234 1.8E-27 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_37330 e9865e78f122deb9375ff9f0ae9a532c 815 PRINTS PR00133 Glycosyl hydrolase family 3 signature 70 89 1.8E-27 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_37330 e9865e78f122deb9375ff9f0ae9a532c 815 PRINTS PR00133 Glycosyl hydrolase family 3 signature 147 163 1.8E-27 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_37330 e9865e78f122deb9375ff9f0ae9a532c 815 Pfam PF14310 Fibronectin type III-like domain 732 798 9.1E-17 T 13-10-2018 IPR026891 Fibronectin type III-like domain RAM_05885 942c36083ef35e85ca926e3e9b02ae50 170 SUPERFAMILY SSF55961 6 165 7.95E-29 T 13-10-2018 RAM_05885 942c36083ef35e85ca926e3e9b02ae50 170 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 13 161 1.9E-20 T 13-10-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like RAM_05885 942c36083ef35e85ca926e3e9b02ae50 170 Gene3D G3DSA:3.30.530.20 2 163 8.4E-33 T 13-10-2018 IPR023393 START-like domain superfamily RAM_31710 6a916f02ac4b623562b475bae8c7a5a0 324 Gene3D G3DSA:3.10.450.50 197 324 1.1E-11 T 13-10-2018 RAM_31710 6a916f02ac4b623562b475bae8c7a5a0 324 SUPERFAMILY SSF88946 6 83 3.22E-23 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_31710 6a916f02ac4b623562b475bae8c7a5a0 324 Pfam PF04542 Sigma-70 region 2 16 80 3.3E-19 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_31710 6a916f02ac4b623562b475bae8c7a5a0 324 TIGRFAM TIGR02960 SigX5: RNA polymerase sigma-70 factor, TIGR02960 family 6 319 2.7E-96 T 13-10-2018 IPR014305 RNA polymerase sigma-G type, actinobacteria RAM_31710 6a916f02ac4b623562b475bae8c7a5a0 324 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 16 189 3.5E-22 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_31710 6a916f02ac4b623562b475bae8c7a5a0 324 Gene3D G3DSA:1.10.10.10 131 193 2.7E-11 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_31710 6a916f02ac4b623562b475bae8c7a5a0 324 Pfam PF08281 Sigma-70, region 4 133 186 6.4E-13 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_31710 6a916f02ac4b623562b475bae8c7a5a0 324 Gene3D G3DSA:1.10.1740.10 2 81 2.1E-24 T 13-10-2018 RAM_31710 6a916f02ac4b623562b475bae8c7a5a0 324 SUPERFAMILY SSF54427 202 295 4.98E-10 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_31710 6a916f02ac4b623562b475bae8c7a5a0 324 SUPERFAMILY SSF88659 129 188 8.29E-11 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_46775 d401fb561e785e1ecb9d821f016d710f 209 SUPERFAMILY SSF88946 52 128 5.1E-15 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_46775 d401fb561e785e1ecb9d821f016d710f 209 Pfam PF04542 Sigma-70 region 2 56 122 2.5E-9 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_46775 d401fb561e785e1ecb9d821f016d710f 209 Gene3D G3DSA:1.10.10.10 149 208 1.3E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_46775 d401fb561e785e1ecb9d821f016d710f 209 Gene3D G3DSA:1.10.1740.10 45 148 3.6E-12 T 13-10-2018 RAM_46775 d401fb561e785e1ecb9d821f016d710f 209 Pfam PF08281 Sigma-70, region 4 149 201 4.6E-18 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_46775 d401fb561e785e1ecb9d821f016d710f 209 SUPERFAMILY SSF88659 135 206 2.8E-17 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_46775 d401fb561e785e1ecb9d821f016d710f 209 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 53 205 2.1E-25 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_46775 d401fb561e785e1ecb9d821f016d710f 209 TIGRFAM TIGR02983 SigE-fam_strep: RNA polymerase sigma-70 factor, sigma-E family 53 207 1.5E-46 T 13-10-2018 IPR014325 RNA polymerase sigma-E factor, actinobacteria GO:0016987 RAM_30735 4e6f5cd22eb54f649eba7a4f0ed1e5bd 758 SUPERFAMILY SSF48208 251 689 6.12E-34 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_30735 4e6f5cd22eb54f649eba7a4f0ed1e5bd 758 Gene3D G3DSA:2.60.40.1180 619 729 1.1E-7 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta RAM_30735 4e6f5cd22eb54f649eba7a4f0ed1e5bd 758 Gene3D G3DSA:1.50.10.10 506 618 2.3E-8 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 RAM_30735 4e6f5cd22eb54f649eba7a4f0ed1e5bd 758 Gene3D G3DSA:1.50.10.10 257 505 5.3E-18 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 RAM_13255 57540f5b70c55cefc91b0cef5019dcf4 227 Gene3D G3DSA:3.40.50.1820 1 204 3.2E-12 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_13255 57540f5b70c55cefc91b0cef5019dcf4 227 SUPERFAMILY SSF53474 1 197 5.31E-14 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_30195 c9b1e9a3f10d1bef3d37a1d6864367d1 407 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 216 400 1.7E-41 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_30195 c9b1e9a3f10d1bef3d37a1d6864367d1 407 Pfam PF13185 GAF domain 26 162 2.1E-17 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_30195 c9b1e9a3f10d1bef3d37a1d6864367d1 407 Gene3D G3DSA:3.30.450.40 6 170 5.1E-30 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_30195 c9b1e9a3f10d1bef3d37a1d6864367d1 407 SUPERFAMILY SSF55781 8 163 2.09E-26 T 13-10-2018 RAM_30195 c9b1e9a3f10d1bef3d37a1d6864367d1 407 SMART SM00065 26 171 3.8E-15 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_30195 c9b1e9a3f10d1bef3d37a1d6864367d1 407 SUPERFAMILY SSF81606 193 400 2.88E-7 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_30195 c9b1e9a3f10d1bef3d37a1d6864367d1 407 SMART SM00331 188 400 9.1E-29 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_30195 c9b1e9a3f10d1bef3d37a1d6864367d1 407 Gene3D G3DSA:3.60.40.10 183 401 7.9E-56 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_38820 015e8f1038b5ff12cb5286e33cd82516 215 SMART SM00345 14 72 5.3E-11 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_38820 015e8f1038b5ff12cb5286e33cd82516 215 SUPERFAMILY SSF46785 5 76 7.31E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_38820 015e8f1038b5ff12cb5286e33cd82516 215 Gene3D G3DSA:1.20.120.530 76 215 5.3E-25 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_38820 015e8f1038b5ff12cb5286e33cd82516 215 Gene3D G3DSA:1.10.10.10 7 72 3.3E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_38820 015e8f1038b5ff12cb5286e33cd82516 215 SUPERFAMILY SSF48008 78 213 2.09E-24 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_38820 015e8f1038b5ff12cb5286e33cd82516 215 Pfam PF00392 Bacterial regulatory proteins, gntR family 10 71 1.6E-15 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_38820 015e8f1038b5ff12cb5286e33cd82516 215 SMART SM00895 82 206 4.7E-20 T 13-10-2018 IPR011711 GntR, C-terminal RAM_38820 015e8f1038b5ff12cb5286e33cd82516 215 Pfam PF07729 FCD domain 83 204 1.8E-22 T 13-10-2018 IPR011711 GntR, C-terminal RAM_33145 1778f60ea1f87e2b6f46f12a9b23400a 849 SUPERFAMILY SSF52540 11 206 6.79E-11 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_33145 1778f60ea1f87e2b6f46f12a9b23400a 849 Pfam PF13191 AAA ATPase domain 6 139 3.3E-8 T 13-10-2018 RAM_33145 1778f60ea1f87e2b6f46f12a9b23400a 849 Gene3D G3DSA:1.10.10.10 781 844 3.3E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_33145 1778f60ea1f87e2b6f46f12a9b23400a 849 Gene3D G3DSA:1.25.40.10 465 765 8.6E-28 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_33145 1778f60ea1f87e2b6f46f12a9b23400a 849 Pfam PF00196 Bacterial regulatory proteins, luxR family 784 836 4.8E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_33145 1778f60ea1f87e2b6f46f12a9b23400a 849 Gene3D G3DSA:3.40.50.300 6 159 6.8E-6 T 13-10-2018 RAM_33145 1778f60ea1f87e2b6f46f12a9b23400a 849 SUPERFAMILY SSF46894 778 844 5.78E-16 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_33145 1778f60ea1f87e2b6f46f12a9b23400a 849 SMART SM00421 781 838 2.9E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_11885 03dbf51431f941ed915440cb20e3deb9 166 Hamap MF_00163 Peptide deformylase [def]. 2 160 26.208 T 13-10-2018 IPR023635 Peptide deformylase RAM_11885 03dbf51431f941ed915440cb20e3deb9 166 SUPERFAMILY SSF56420 2 162 2.22E-49 T 13-10-2018 IPR036821 Peptide deformylase superfamily RAM_11885 03dbf51431f941ed915440cb20e3deb9 166 Gene3D G3DSA:3.90.45.10 1 166 1.4E-47 T 13-10-2018 IPR036821 Peptide deformylase superfamily RAM_11885 03dbf51431f941ed915440cb20e3deb9 166 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 6 156 2.3E-35 T 13-10-2018 IPR023635 Peptide deformylase RAM_11885 03dbf51431f941ed915440cb20e3deb9 166 Pfam PF01327 Polypeptide deformylase 3 150 7.2E-40 T 13-10-2018 IPR023635 Peptide deformylase RAM_11885 03dbf51431f941ed915440cb20e3deb9 166 PIRSF PIRSF004749 1 162 5.8E-40 T 13-10-2018 IPR023635 Peptide deformylase RAM_11885 03dbf51431f941ed915440cb20e3deb9 166 PRINTS PR01576 Peptide deformylase signature 33 62 4.3E-25 T 13-10-2018 IPR023635 Peptide deformylase RAM_11885 03dbf51431f941ed915440cb20e3deb9 166 PRINTS PR01576 Peptide deformylase signature 99 117 4.3E-25 T 13-10-2018 IPR023635 Peptide deformylase RAM_11885 03dbf51431f941ed915440cb20e3deb9 166 PRINTS PR01576 Peptide deformylase signature 118 147 4.3E-25 T 13-10-2018 IPR023635 Peptide deformylase RAM_11885 03dbf51431f941ed915440cb20e3deb9 166 PRINTS PR01576 Peptide deformylase signature 87 98 4.3E-25 T 13-10-2018 IPR023635 Peptide deformylase RAM_24650 2c6b46b26f79620cf30ec309c1a934b0 517 Pfam PF17482 Phage tail sheath C-terminal domain 400 505 1.2E-18 T 13-10-2018 IPR020287 Tail sheath protein, C-terminal domain RAM_24650 2c6b46b26f79620cf30ec309c1a934b0 517 Gene3D G3DSA:3.40.50.11780 236 367 1.3E-13 T 13-10-2018 RAM_24650 2c6b46b26f79620cf30ec309c1a934b0 517 Pfam PF04984 Phage tail sheath protein subtilisin-like domain 234 399 6.3E-34 T 13-10-2018 IPR035089 Tail sheath protein, subtilisin-like domain RAM_40825 47b6303bb7f0645531c7058363fddecf 149 SMART SM00862 69 144 6.4E-24 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_40825 47b6303bb7f0645531c7058363fddecf 149 Pfam PF00486 Transcriptional regulatory protein, C terminal 70 143 9.0E-24 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_40825 47b6303bb7f0645531c7058363fddecf 149 SUPERFAMILY SSF52172 1 55 5.57E-12 T 13-10-2018 IPR011006 CheY-like superfamily RAM_40825 47b6303bb7f0645531c7058363fddecf 149 Gene3D G3DSA:1.10.10.10 47 148 5.0E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_40825 47b6303bb7f0645531c7058363fddecf 149 Gene3D G3DSA:3.40.50.2300 1 46 8.2E-12 T 13-10-2018 RAM_40825 47b6303bb7f0645531c7058363fddecf 149 SUPERFAMILY SSF46894 43 144 3.4E-28 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_12855 eb706e56ae2c837cc4fdde3e28adb7a2 338 PIRSF PIRSF015921 2 338 1.5E-71 T 13-10-2018 IPR012171 Fatty acid desaturase GO:0006629|GO:0016021|GO:0016491 RAM_12855 eb706e56ae2c837cc4fdde3e28adb7a2 338 Pfam PF00487 Fatty acid desaturase 56 314 1.3E-36 T 13-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 RAM_28070 7616e374d2b2cae61380baea518913f5 215 SMART SM00448 6 123 4.0E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_28070 7616e374d2b2cae61380baea518913f5 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 166 182 7.0E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_28070 7616e374d2b2cae61380baea518913f5 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 152 166 7.0E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_28070 7616e374d2b2cae61380baea518913f5 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 182 194 7.0E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_28070 7616e374d2b2cae61380baea518913f5 215 SUPERFAMILY SSF52172 5 128 2.28E-30 T 13-10-2018 IPR011006 CheY-like superfamily RAM_28070 7616e374d2b2cae61380baea518913f5 215 Pfam PF00072 Response regulator receiver domain 9 123 3.0E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_28070 7616e374d2b2cae61380baea518913f5 215 SMART SM00421 149 206 7.8E-23 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_28070 7616e374d2b2cae61380baea518913f5 215 Pfam PF00196 Bacterial regulatory proteins, luxR family 152 205 1.5E-18 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_28070 7616e374d2b2cae61380baea518913f5 215 Gene3D G3DSA:3.40.50.12740 6 212 1.4E-63 T 13-10-2018 RAM_28070 7616e374d2b2cae61380baea518913f5 215 SUPERFAMILY SSF46894 144 213 3.4E-22 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_28070 7616e374d2b2cae61380baea518913f5 215 ProSitePatterns PS00622 LuxR-type HTH domain signature. 166 193 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_02930 757464a75f1a5b8016ab7c42eb292c32 322 Gene3D G3DSA:2.130.10.10 27 168 3.5E-17 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RAM_02930 757464a75f1a5b8016ab7c42eb292c32 322 SUPERFAMILY SSF51004 17 268 7.46E-32 T 13-10-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily RAM_02930 757464a75f1a5b8016ab7c42eb292c32 322 Gene3D G3DSA:2.130.10.10 179 320 7.6E-23 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RAM_27615 b8f37a18770c23d9ba0ac9cac5352bd8 276 Pfam PF08241 Methyltransferase domain 84 195 1.3E-11 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 RAM_27615 b8f37a18770c23d9ba0ac9cac5352bd8 276 SUPERFAMILY SSF53335 52 232 2.73E-22 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_27615 b8f37a18770c23d9ba0ac9cac5352bd8 276 Gene3D G3DSA:3.40.50.150 52 229 5.7E-20 T 13-10-2018 RAM_20230 4eedc6a8ac618749b32f571d575b15bf 261 Pfam PF00561 alpha/beta hydrolase fold 17 246 6.9E-22 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_20230 4eedc6a8ac618749b32f571d575b15bf 261 PRINTS PR00412 Epoxide hydrolase signature 234 256 3.4E-8 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_20230 4eedc6a8ac618749b32f571d575b15bf 261 PRINTS PR00412 Epoxide hydrolase signature 81 94 3.4E-8 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_20230 4eedc6a8ac618749b32f571d575b15bf 261 PRINTS PR00412 Epoxide hydrolase signature 67 80 3.4E-8 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_20230 4eedc6a8ac618749b32f571d575b15bf 261 PRINTS PR00412 Epoxide hydrolase signature 201 217 3.4E-8 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_20230 4eedc6a8ac618749b32f571d575b15bf 261 Gene3D G3DSA:3.40.50.1820 8 258 2.0E-47 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_20230 4eedc6a8ac618749b32f571d575b15bf 261 SUPERFAMILY SSF53474 14 257 1.01E-43 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_35345 e6603eee897c9d70d912f2ddef779e43 764 Gene3D G3DSA:3.40.50.720 119 307 9.2E-48 T 13-10-2018 RAM_35345 e6603eee897c9d70d912f2ddef779e43 764 SUPERFAMILY SSF69572 169 313 4.32E-13 T 13-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 RAM_35345 e6603eee897c9d70d912f2ddef779e43 764 Gene3D G3DSA:3.30.160.660 555 678 1.9E-118 T 13-10-2018 RAM_35345 e6603eee897c9d70d912f2ddef779e43 764 TIGRFAM TIGR03882 cyclo_dehyd_2: bacteriocin biosynthesis cyclodehydratase domain 192 357 1.2E-42 T 13-10-2018 IPR022291 Bacteriocin biosynthesis, cyclodehydratase domain RAM_35345 e6603eee897c9d70d912f2ddef779e43 764 TIGRFAM TIGR00702 TIGR00702: YcaO-type kinase domain 395 727 2.7E-24 T 13-10-2018 IPR003776 YcaO-like domain RAM_35345 e6603eee897c9d70d912f2ddef779e43 764 Gene3D G3DSA:2.40.50.820 428 518 1.9E-118 T 13-10-2018 RAM_35345 e6603eee897c9d70d912f2ddef779e43 764 Pfam PF00899 ThiF family 169 302 8.2E-7 T 13-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 RAM_35345 e6603eee897c9d70d912f2ddef779e43 764 Pfam PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding 399 727 8.1E-96 T 13-10-2018 IPR003776 YcaO-like domain RAM_35345 e6603eee897c9d70d912f2ddef779e43 764 Gene3D G3DSA:1.10.10.2500 13 113 1.9E-10 T 13-10-2018 RAM_35345 e6603eee897c9d70d912f2ddef779e43 764 Gene3D G3DSA:1.10.490.140 406 736 1.9E-118 T 13-10-2018 RAM_35345 e6603eee897c9d70d912f2ddef779e43 764 TIGRFAM TIGR03604 TOMM_cyclo_SagD: thiazole/oxazole-forming peptide maturase, SagD family component 399 761 5.3E-78 T 13-10-2018 IPR027624 Thiazole/oxazole-forming peptide maturase, SagD family component RAM_32915 fc38f3bb4d4efe20c93c36051284cd86 339 Gene3D G3DSA:3.90.180.10 8 331 4.0E-103 T 13-10-2018 RAM_32915 fc38f3bb4d4efe20c93c36051284cd86 339 SMART SM00829 11 331 2.9E-37 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_32915 fc38f3bb4d4efe20c93c36051284cd86 339 SUPERFAMILY SSF51735 118 267 2.93E-37 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_32915 fc38f3bb4d4efe20c93c36051284cd86 339 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 92 1.9E-9 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_32915 fc38f3bb4d4efe20c93c36051284cd86 339 SUPERFAMILY SSF50129 1 151 2.99E-37 T 13-10-2018 IPR011032 GroES-like superfamily RAM_32915 fc38f3bb4d4efe20c93c36051284cd86 339 Gene3D G3DSA:3.40.50.720 126 302 4.0E-103 T 13-10-2018 RAM_32915 fc38f3bb4d4efe20c93c36051284cd86 339 Pfam PF13602 Zinc-binding dehydrogenase 188 331 3.0E-35 T 13-10-2018 RAM_43860 6e5321c7538f7936a8f48b3dc3cac8f9 321 Gene3D G3DSA:3.40.190.10 32 145 1.9E-8 T 13-10-2018 RAM_43860 6e5321c7538f7936a8f48b3dc3cac8f9 321 Pfam PF13379 NMT1-like family 35 258 4.0E-14 T 13-10-2018 RAM_43860 6e5321c7538f7936a8f48b3dc3cac8f9 321 SUPERFAMILY SSF53850 38 311 1.04E-24 T 13-10-2018 RAM_43860 6e5321c7538f7936a8f48b3dc3cac8f9 321 Gene3D G3DSA:3.40.190.10 146 315 2.1E-23 T 13-10-2018 RAM_08205 71e2ed058b908ac1ae454f3d7663049c 386 SUPERFAMILY SSF53335 90 205 1.81E-11 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_08205 71e2ed058b908ac1ae454f3d7663049c 386 Gene3D G3DSA:3.40.50.150 83 250 2.4E-27 T 13-10-2018 RAM_04305 284aed7ed1224e27974ccab35dc71889 369 Gene3D G3DSA:1.10.540.10 1 103 3.3E-19 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_04305 284aed7ed1224e27974ccab35dc71889 369 SUPERFAMILY SSF56645 5 191 5.5E-25 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_04305 284aed7ed1224e27974ccab35dc71889 369 PIRSF PIRSF016578 1 369 5.3E-111 T 13-10-2018 RAM_04305 284aed7ed1224e27974ccab35dc71889 369 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 216 348 7.0E-34 T 13-10-2018 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain RAM_04305 284aed7ed1224e27974ccab35dc71889 369 Gene3D G3DSA:1.20.140.10 194 367 1.6E-37 T 13-10-2018 RAM_04305 284aed7ed1224e27974ccab35dc71889 369 SUPERFAMILY SSF47203 208 363 4.99E-20 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_04305 284aed7ed1224e27974ccab35dc71889 369 Gene3D G3DSA:2.40.110.10 104 192 5.9E-29 T 13-10-2018 RAM_11035 647e9778c40a172e1a010f8cca8164a0 281 Gene3D G3DSA:3.40.50.720 1 272 2.6E-68 T 13-10-2018 RAM_11035 647e9778c40a172e1a010f8cca8164a0 281 Pfam PF08338 Domain of unknown function (DUF1731) 234 280 1.3E-15 T 13-10-2018 IPR013549 Domain of unknown function DUF1731 RAM_11035 647e9778c40a172e1a010f8cca8164a0 281 Pfam PF01370 NAD dependent epimerase/dehydratase family 1 110 3.2E-8 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 RAM_11035 647e9778c40a172e1a010f8cca8164a0 281 SUPERFAMILY SSF51735 2 276 1.83E-35 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_11035 647e9778c40a172e1a010f8cca8164a0 281 TIGRFAM TIGR01777 yfcH: TIGR01777 family protein 1 278 6.6E-86 T 13-10-2018 IPR010099 Epimerase family protein SDR39U1 RAM_03440 88a056b4de17569ee256fa8c9779dca8 156 Gene3D G3DSA:1.10.455.10 2 156 1.4E-56 T 13-10-2018 IPR036823 Ribosomal protein S7 domain superfamily RAM_03440 88a056b4de17569ee256fa8c9779dca8 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 156 3.2E-64 T 13-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 RAM_03440 88a056b4de17569ee256fa8c9779dca8 156 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 13-10-2018 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_03440 88a056b4de17569ee256fa8c9779dca8 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 34.744 T 13-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 RAM_03440 88a056b4de17569ee256fa8c9779dca8 156 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 2.0E-59 T 13-10-2018 IPR023798 Ribosomal protein S7 domain RAM_03440 88a056b4de17569ee256fa8c9779dca8 156 PIRSF PIRSF002122 5 156 5.7E-56 T 13-10-2018 IPR000235 Ribosomal protein S5/S7 GO:0006412 RAM_03440 88a056b4de17569ee256fa8c9779dca8 156 SUPERFAMILY SSF47973 1 149 6.67E-57 T 13-10-2018 IPR036823 Ribosomal protein S7 domain superfamily RAM_15030 d957e7a10e5f48c90cb448608a71925b 229 SUPERFAMILY SSF64438 2 227 4.03E-72 T 13-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic RAM_15030 d957e7a10e5f48c90cb448608a71925b 229 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 3 226 8.3E-72 T 13-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase RAM_15030 d957e7a10e5f48c90cb448608a71925b 229 Gene3D G3DSA:3.60.140.10 1 229 1.8E-76 T 13-10-2018 IPR038371 Multi-copper polyphenol oxidoreductase superfamily RAM_15030 d957e7a10e5f48c90cb448608a71925b 229 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 9 227 3.7E-55 T 13-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase RAM_27425 ee0a9ef127a113364b8e3aa6b67318ad 455 Pfam PF00656 Caspase domain 13 188 7.7E-9 T 13-10-2018 RAM_27425 ee0a9ef127a113364b8e3aa6b67318ad 455 Gene3D G3DSA:3.40.50.1460 4 198 8.5E-9 T 13-10-2018 RAM_09205 bba51a6c1ffe8391f42bd6a64cc4abf5 363 Gene3D G3DSA:4.10.1250.10 237 278 3.0E-15 T 13-10-2018 RAM_09205 bba51a6c1ffe8391f42bd6a64cc4abf5 363 Pfam PF01571 Aminomethyltransferase folate-binding domain 7 257 2.7E-94 T 13-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain RAM_09205 bba51a6c1ffe8391f42bd6a64cc4abf5 363 Gene3D G3DSA:3.30.1360.120 5 235 1.6E-89 T 13-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RAM_09205 bba51a6c1ffe8391f42bd6a64cc4abf5 363 Gene3D G3DSA:2.40.30.110 281 362 2.5E-31 T 13-10-2018 RAM_09205 bba51a6c1ffe8391f42bd6a64cc4abf5 363 TIGRFAM TIGR00528 gcvT: glycine cleavage system T protein 3 361 2.8E-109 T 13-10-2018 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 RAM_09205 bba51a6c1ffe8391f42bd6a64cc4abf5 363 Hamap MF_00259 Aminomethyltransferase [gcvT]. 1 362 43.801 T 13-10-2018 IPR022903 Glycine cleavage system T protein, bacteria GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RAM_09205 bba51a6c1ffe8391f42bd6a64cc4abf5 363 PIRSF PIRSF006487 1 363 8.6E-103 T 13-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 RAM_09205 bba51a6c1ffe8391f42bd6a64cc4abf5 363 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 265 356 4.2E-25 T 13-10-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RAM_09205 bba51a6c1ffe8391f42bd6a64cc4abf5 363 SUPERFAMILY SSF101790 274 361 1.59E-26 T 13-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal RAM_09205 bba51a6c1ffe8391f42bd6a64cc4abf5 363 Gene3D G3DSA:3.30.70.1400 51 137 1.6E-89 T 13-10-2018 RAM_09205 bba51a6c1ffe8391f42bd6a64cc4abf5 363 SUPERFAMILY SSF103025 3 277 3.03E-98 T 13-10-2018 RAM_18520 d83f252650308c25ee3392b1a08376ec 738 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 164 682 3.3E-128 T 13-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RAM_18520 d83f252650308c25ee3392b1a08376ec 738 Gene3D G3DSA:3.30.365.10 196 288 1.3E-63 T 13-10-2018 RAM_18520 d83f252650308c25ee3392b1a08376ec 738 Gene3D G3DSA:3.90.1170.50 2 143 4.5E-32 T 13-10-2018 RAM_18520 d83f252650308c25ee3392b1a08376ec 738 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 28 142 1.4E-18 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RAM_18520 d83f252650308c25ee3392b1a08376ec 738 Gene3D G3DSA:3.30.365.10 455 597 7.6E-87 T 13-10-2018 RAM_18520 d83f252650308c25ee3392b1a08376ec 738 SUPERFAMILY SSF54665 10 154 7.46E-34 T 13-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily RAM_18520 d83f252650308c25ee3392b1a08376ec 738 SMART SM01008 28 144 1.1E-31 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RAM_18520 d83f252650308c25ee3392b1a08376ec 738 Gene3D G3DSA:3.30.365.10 598 736 7.6E-87 T 13-10-2018 RAM_18520 d83f252650308c25ee3392b1a08376ec 738 SUPERFAMILY SSF56003 136 738 2.75E-163 T 13-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 RAM_18520 d83f252650308c25ee3392b1a08376ec 738 Gene3D G3DSA:3.30.365.10 172 393 1.3E-63 T 13-10-2018 RAM_35395 3c1ea5d282845c9eff9d282175a8722c 253 TIGRFAM TIGR02434 CobF: precorrin-6A synthase (deacetylating) 2 250 3.5E-103 T 13-10-2018 IPR012797 Cobalamin (vitamin B12) biosynthesis CobF, precorrin-6A synthase GO:0009236|GO:0043819 KEGG: 00860+2.1.1.152|MetaCyc: PWY-7376 RAM_35395 3c1ea5d282845c9eff9d282175a8722c 253 SUPERFAMILY SSF53790 1 250 1.28E-33 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 RAM_35395 3c1ea5d282845c9eff9d282175a8722c 253 Gene3D G3DSA:3.40.1010.10 1 142 1.7E-44 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 RAM_35395 3c1ea5d282845c9eff9d282175a8722c 253 PIRSF PIRSF036525 1 253 1.3E-106 T 13-10-2018 IPR012797 Cobalamin (vitamin B12) biosynthesis CobF, precorrin-6A synthase GO:0009236|GO:0043819 KEGG: 00860+2.1.1.152|MetaCyc: PWY-7376 RAM_35395 3c1ea5d282845c9eff9d282175a8722c 253 Gene3D G3DSA:3.30.950.10 143 253 8.7E-40 T 13-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 RAM_35395 3c1ea5d282845c9eff9d282175a8722c 253 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 3 221 8.5E-28 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 RAM_30240 b85762a94760a3a911414272fd5c7f15 1089 Gene3D G3DSA:2.60.40.1190 857 1088 2.3E-45 T 13-10-2018 RAM_30240 b85762a94760a3a911414272fd5c7f15 1089 Pfam PF09985 C-terminal binding-module, SLH-like, of glucodextranase 861 1076 6.8E-38 T 13-10-2018 IPR019248 Glucodextranase-like, C-terminal RAM_30240 b85762a94760a3a911414272fd5c7f15 1089 SUPERFAMILY SSF48208 320 758 7.37E-62 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_30240 b85762a94760a3a911414272fd5c7f15 1089 SUPERFAMILY SSF74650 26 315 1.0E-55 T 13-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 RAM_30240 b85762a94760a3a911414272fd5c7f15 1089 Gene3D G3DSA:2.70.98.10 27 316 6.0E-76 T 13-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 RAM_30240 b85762a94760a3a911414272fd5c7f15 1089 Pfam PF00723 Glycosyl hydrolases family 15 429 621 1.6E-15 T 13-10-2018 IPR011613 GH15-like domain Reactome: R-HSA-70221 RAM_30240 b85762a94760a3a911414272fd5c7f15 1089 Gene3D G3DSA:1.50.10.10 317 765 4.2E-139 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 RAM_30240 b85762a94760a3a911414272fd5c7f15 1089 SUPERFAMILY SSF49344 860 1081 3.81E-33 T 13-10-2018 RAM_30240 b85762a94760a3a911414272fd5c7f15 1089 Pfam PF09137 Glucodextranase, domain N 33 312 6.6E-75 T 13-10-2018 IPR015220 Glucodextranase, N-terminal KEGG: 00500+3.2.1.3|MetaCyc: PWY-5941 RAM_25860 3e95b4005159719b47ba669096141624 223 SUPERFAMILY SSF52172 1 118 5.41E-39 T 13-10-2018 IPR011006 CheY-like superfamily RAM_25860 3e95b4005159719b47ba669096141624 223 SMART SM00862 148 218 8.9E-24 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_25860 3e95b4005159719b47ba669096141624 223 SUPERFAMILY SSF46894 129 219 7.94E-27 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_25860 3e95b4005159719b47ba669096141624 223 Gene3D G3DSA:3.40.50.2300 1 121 4.4E-38 T 13-10-2018 RAM_25860 3e95b4005159719b47ba669096141624 223 SMART SM00448 1 112 3.5E-39 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_25860 3e95b4005159719b47ba669096141624 223 Gene3D G3DSA:1.10.10.10 124 221 3.8E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_25860 3e95b4005159719b47ba669096141624 223 Pfam PF00072 Response regulator receiver domain 4 112 8.5E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_25860 3e95b4005159719b47ba669096141624 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 218 8.0E-25 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_41110 cd48e0d621d97fe438d8a3ff4ecbf06b 200 Gene3D G3DSA:3.90.70.10 45 193 8.2E-6 T 13-10-2018 RAM_41110 cd48e0d621d97fe438d8a3ff4ecbf06b 200 Pfam PF12385 Papain-like cysteine protease AvrRpt2 39 177 3.2E-12 T 13-10-2018 IPR022118 Peptidase C70, AvrRpt2 RAM_19825 8b8c63cb5153222fb35a51a9d59e0c46 558 SUPERFAMILY SSF50800 1 213 1.15E-58 T 13-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily RAM_19825 8b8c63cb5153222fb35a51a9d59e0c46 558 SUPERFAMILY SSF52343 325 448 5.11E-30 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RAM_19825 8b8c63cb5153222fb35a51a9d59e0c46 558 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 482 550 3.6E-8 T 13-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RAM_19825 8b8c63cb5153222fb35a51a9d59e0c46 558 Pfam PF03473 MOSC domain 52 161 1.1E-18 T 13-10-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 RAM_19825 8b8c63cb5153222fb35a51a9d59e0c46 558 Pfam PF00175 Oxidoreductase NAD-binding domain 333 429 3.1E-9 T 13-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 RAM_19825 8b8c63cb5153222fb35a51a9d59e0c46 558 Gene3D G3DSA:2.40.33.20 1 221 8.1E-65 T 13-10-2018 RAM_19825 8b8c63cb5153222fb35a51a9d59e0c46 558 Pfam PF00970 Oxidoreductase FAD-binding domain 236 322 1.3E-6 T 13-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 RAM_19825 8b8c63cb5153222fb35a51a9d59e0c46 558 SUPERFAMILY SSF54292 438 558 3.01E-20 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RAM_19825 8b8c63cb5153222fb35a51a9d59e0c46 558 Gene3D G3DSA:2.40.30.10 222 322 2.7E-29 T 13-10-2018 RAM_19825 8b8c63cb5153222fb35a51a9d59e0c46 558 SUPERFAMILY SSF63380 222 322 3.23E-25 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RAM_19825 8b8c63cb5153222fb35a51a9d59e0c46 558 Gene3D G3DSA:3.10.20.30 471 558 3.0E-15 T 13-10-2018 IPR012675 Beta-grasp domain superfamily RAM_19825 8b8c63cb5153222fb35a51a9d59e0c46 558 PRINTS PR00409 Phthalate dioxygenase reductase family signature 415 423 3.8E-12 T 13-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RAM_19825 8b8c63cb5153222fb35a51a9d59e0c46 558 PRINTS PR00409 Phthalate dioxygenase reductase family signature 310 324 3.8E-12 T 13-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RAM_19825 8b8c63cb5153222fb35a51a9d59e0c46 558 PRINTS PR00409 Phthalate dioxygenase reductase family signature 250 260 3.8E-12 T 13-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RAM_19825 8b8c63cb5153222fb35a51a9d59e0c46 558 PRINTS PR00409 Phthalate dioxygenase reductase family signature 332 351 3.8E-12 T 13-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RAM_19825 8b8c63cb5153222fb35a51a9d59e0c46 558 Pfam PF03475 3-alpha domain 172 212 6.5E-14 T 13-10-2018 IPR005163 3-alpha domain RAM_19825 8b8c63cb5153222fb35a51a9d59e0c46 558 Gene3D G3DSA:3.40.50.80 323 452 4.2E-33 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RAM_35830 af86b020b964a6674eb82e40f68aa695 1285 Pfam PF04408 Helicase associated domain (HA2) 455 544 2.2E-17 T 13-10-2018 IPR007502 Helicase-associated domain GO:0004386 RAM_35830 af86b020b964a6674eb82e40f68aa695 1285 Pfam PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold 611 688 4.0E-20 T 13-10-2018 IPR011709 Domain of unknown function DUF1605 RAM_35830 af86b020b964a6674eb82e40f68aa695 1285 Pfam PF00271 Helicase conserved C-terminal domain 273 390 8.8E-11 T 13-10-2018 IPR001650 Helicase, C-terminal RAM_35830 af86b020b964a6674eb82e40f68aa695 1285 SMART SM00382 70 371 1.4E-5 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_35830 af86b020b964a6674eb82e40f68aa695 1285 Gene3D G3DSA:3.40.50.300 231 408 2.8E-56 T 13-10-2018 RAM_35830 af86b020b964a6674eb82e40f68aa695 1285 Pfam PF11898 Domain of unknown function (DUF3418) 701 1281 2.7E-234 T 13-10-2018 IPR024590 RNA helicase HrpA, C-terminal RAM_35830 af86b020b964a6674eb82e40f68aa695 1285 SMART SM00490 291 391 2.3E-15 T 13-10-2018 IPR001650 Helicase, C-terminal RAM_35830 af86b020b964a6674eb82e40f68aa695 1285 Pfam PF00270 DEAD/DEAH box helicase 63 211 1.1E-7 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RAM_35830 af86b020b964a6674eb82e40f68aa695 1285 SMART SM00847 451 546 7.5E-36 T 13-10-2018 IPR007502 Helicase-associated domain GO:0004386 RAM_35830 af86b020b964a6674eb82e40f68aa695 1285 Gene3D G3DSA:3.40.50.300 7 230 1.0E-75 T 13-10-2018 RAM_35830 af86b020b964a6674eb82e40f68aa695 1285 Gene3D G3DSA:1.20.120.1080 436 536 8.8E-17 T 13-10-2018 RAM_35830 af86b020b964a6674eb82e40f68aa695 1285 SMART SM00487 53 237 8.4E-28 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RAM_35830 af86b020b964a6674eb82e40f68aa695 1285 SUPERFAMILY SSF52540 52 587 4.22E-110 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_35830 af86b020b964a6674eb82e40f68aa695 1285 TIGRFAM TIGR01967 DEAH_box_HrpA: RNA helicase HrpA 2 1281 0.0 T 13-10-2018 IPR010222 RNA helicase HrpA GO:0004004 RAM_09855 76c651809491383f4acee5eec1b1bf5f 769 SUPERFAMILY SSF109604 380 487 4.71E-14 T 13-10-2018 RAM_09855 76c651809491383f4acee5eec1b1bf5f 769 SUPERFAMILY SSF81593 155 271 8.63E-6 T 13-10-2018 RAM_09855 76c651809491383f4acee5eec1b1bf5f 769 SUPERFAMILY SSF81301 22 151 1.82E-14 T 13-10-2018 RAM_09855 76c651809491383f4acee5eec1b1bf5f 769 SMART SM00471 408 541 9.2E-6 T 13-10-2018 IPR003607 HD/PDEase domain RAM_09855 76c651809491383f4acee5eec1b1bf5f 769 Pfam PF01966 HD domain 415 511 1.9E-9 T 13-10-2018 IPR006674 HD domain RAM_09855 76c651809491383f4acee5eec1b1bf5f 769 Hamap MF_00277 Bifunctional uridylyltransferase/uridylyl-removing enzyme [glnD]. 1 769 61.866 T 13-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 RAM_09855 76c651809491383f4acee5eec1b1bf5f 769 PIRSF PIRSF006288 572 769 6.9E-21 T 13-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 RAM_09855 76c651809491383f4acee5eec1b1bf5f 769 PIRSF PIRSF006288 5 586 8.7E-138 T 13-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 RAM_09855 76c651809491383f4acee5eec1b1bf5f 769 SUPERFAMILY SSF55021 697 753 3.2E-6 T 13-10-2018 RAM_09855 76c651809491383f4acee5eec1b1bf5f 769 Gene3D G3DSA:1.10.3210.10 404 531 1.1E-9 T 13-10-2018 RAM_05655 63cc7f95eb224de2fbb04f60347550f0 256 SUPERFAMILY SSF46689 30 111 1.99E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_05655 63cc7f95eb224de2fbb04f60347550f0 256 Pfam PF00440 Bacterial regulatory proteins, tetR family 45 89 1.4E-12 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_05655 63cc7f95eb224de2fbb04f60347550f0 256 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 44 57 3.3E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_05655 63cc7f95eb224de2fbb04f60347550f0 256 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 64 87 3.3E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_05655 63cc7f95eb224de2fbb04f60347550f0 256 SUPERFAMILY SSF48498 113 222 2.22E-18 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_05655 63cc7f95eb224de2fbb04f60347550f0 256 Gene3D G3DSA:1.10.357.10 28 231 7.7E-40 T 13-10-2018 RAM_17400 e7999a766ce7f3c6cf472ecde88df4bc 939 Gene3D G3DSA:2.60.120.260 36 228 1.2E-37 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_17400 e7999a766ce7f3c6cf472ecde88df4bc 939 Pfam PF00703 Glycosyl hydrolases family 2 239 346 1.6E-12 T 13-10-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RAM_17400 e7999a766ce7f3c6cf472ecde88df4bc 939 SUPERFAMILY SSF49303 237 346 6.62E-19 T 13-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily RAM_17400 e7999a766ce7f3c6cf472ecde88df4bc 939 Gene3D G3DSA:3.20.20.80 358 697 1.0E-66 T 13-10-2018 RAM_17400 e7999a766ce7f3c6cf472ecde88df4bc 939 Gene3D G3DSA:2.60.40.10 235 346 1.1E-23 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_17400 e7999a766ce7f3c6cf472ecde88df4bc 939 SUPERFAMILY SSF51445 343 696 6.93E-57 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_17400 e7999a766ce7f3c6cf472ecde88df4bc 939 Gene3D G3DSA:2.60.40.10 826 932 1.8E-25 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_17400 e7999a766ce7f3c6cf472ecde88df4bc 939 SUPERFAMILY SSF49303 698 803 5.18E-19 T 13-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily RAM_17400 e7999a766ce7f3c6cf472ecde88df4bc 939 Gene3D G3DSA:2.60.40.10 698 825 5.7E-28 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_17400 e7999a766ce7f3c6cf472ecde88df4bc 939 SUPERFAMILY SSF49303 787 931 6.55E-21 T 13-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily RAM_17400 e7999a766ce7f3c6cf472ecde88df4bc 939 SUPERFAMILY SSF49785 45 222 1.12E-29 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_29330 93cda96670393a04737e3b84ad56d607 294 Pfam PF13247 4Fe-4S dicluster domain 105 199 1.4E-23 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RAM_29330 93cda96670393a04737e3b84ad56d607 294 Gene3D G3DSA:3.30.70.20 11 230 6.4E-58 T 13-10-2018 RAM_29330 93cda96670393a04737e3b84ad56d607 294 SUPERFAMILY SSF54862 18 261 3.66E-61 T 13-10-2018 RAM_29330 93cda96670393a04737e3b84ad56d607 294 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 145 156 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RAM_29330 93cda96670393a04737e3b84ad56d607 294 PIRSF PIRSF036298 3 292 9.0E-68 T 13-10-2018 IPR014603 Formate dehydrogenase iron-sulphur subunit GO:0015944|GO:0045333|GO:0051539 RAM_09410 ea0f26de0f397f81d468c9c258689e82 318 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 311 2.5E-12 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_09410 ea0f26de0f397f81d468c9c258689e82 318 Gene3D G3DSA:1.10.3720.10 68 313 1.1E-53 T 13-10-2018 IPR035906 MetI-like superfamily RAM_09410 ea0f26de0f397f81d468c9c258689e82 318 SUPERFAMILY SSF161098 72 307 1.09E-41 T 13-10-2018 IPR035906 MetI-like superfamily RAM_44120 26e0575932e84674a8447f7bbdfc92f8 417 Gene3D G3DSA:3.40.640.10 54 314 3.5E-105 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_44120 26e0575932e84674a8447f7bbdfc92f8 417 Pfam PF00202 Aminotransferase class-III 19 409 4.0E-73 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RAM_44120 26e0575932e84674a8447f7bbdfc92f8 417 SUPERFAMILY SSF53383 9 411 4.81E-104 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_44120 26e0575932e84674a8447f7bbdfc92f8 417 PIRSF PIRSF000521 120 159 0.2 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RAM_44120 26e0575932e84674a8447f7bbdfc92f8 417 PIRSF PIRSF000521 2 126 3.9E-6 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RAM_44120 26e0575932e84674a8447f7bbdfc92f8 417 PIRSF PIRSF000521 181 414 1.1E-28 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RAM_44120 26e0575932e84674a8447f7bbdfc92f8 417 Gene3D G3DSA:3.90.1150.10 9 407 3.5E-105 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_44120 26e0575932e84674a8447f7bbdfc92f8 417 TIGRFAM TIGR00709 dat: 2,4-diaminobutyrate 4-transaminase 2 416 6.1E-142 T 13-10-2018 IPR004637 2,4-diaminobutyrate 4-transaminase GO:0008483|GO:0009058 KEGG: 00260+2.6.1.76|MetaCyc: PWY-6409|MetaCyc: PWY-6562|MetaCyc: PWY-761|MetaCyc: PWY-7855|MetaCyc: PWY-7988 RAM_44120 26e0575932e84674a8447f7bbdfc92f8 417 TIGRFAM TIGR02407 ectoine_ectB: diaminobutyrate--2-oxoglutarate aminotransferase 3 412 7.9E-196 T 13-10-2018 IPR012773 Ectoine biosynthetic protein GO:0019491|GO:0030170|GO:0047307 KEGG: 00260+2.6.1.76|MetaCyc: PWY-6409|MetaCyc: PWY-6562|MetaCyc: PWY-761|MetaCyc: PWY-7855|MetaCyc: PWY-7988 RAM_44120 26e0575932e84674a8447f7bbdfc92f8 417 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 232 268 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RAM_32260 b7eb872a3afccb59bb03d125bbc210ed 405 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 221 339 1.9E-20 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RAM_32260 b7eb872a3afccb59bb03d125bbc210ed 405 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 35 148 1.1E-15 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RAM_32260 b7eb872a3afccb59bb03d125bbc210ed 405 Gene3D G3DSA:3.40.50.300 221 365 9.7E-7 T 13-10-2018 RAM_32260 b7eb872a3afccb59bb03d125bbc210ed 405 SUPERFAMILY SSF52540 35 356 3.88E-15 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_32260 b7eb872a3afccb59bb03d125bbc210ed 405 Gene3D G3DSA:3.40.50.300 1 79 6.9E-6 T 13-10-2018 RAM_05625 fb96769cbc5005bc9ac8943057f5441a 391 SUPERFAMILY SSF50998 46 333 4.24E-7 T 13-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily RAM_05625 fb96769cbc5005bc9ac8943057f5441a 391 Gene3D G3DSA:2.130.10.10 45 253 7.8E-6 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RAM_13960 22215b2c5506693f639b602bd9fc0a43 315 PRINTS PR00101 Aspartate carbamoyltransferase signature 135 152 8.0E-32 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RAM_13960 22215b2c5506693f639b602bd9fc0a43 315 PRINTS PR00101 Aspartate carbamoyltransferase signature 289 303 8.0E-32 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RAM_13960 22215b2c5506693f639b602bd9fc0a43 315 PRINTS PR00101 Aspartate carbamoyltransferase signature 39 61 8.0E-32 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RAM_13960 22215b2c5506693f639b602bd9fc0a43 315 PRINTS PR00101 Aspartate carbamoyltransferase signature 265 270 8.0E-32 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RAM_13960 22215b2c5506693f639b602bd9fc0a43 315 PRINTS PR00101 Aspartate carbamoyltransferase signature 77 86 8.0E-32 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RAM_13960 22215b2c5506693f639b602bd9fc0a43 315 PRINTS PR00101 Aspartate carbamoyltransferase signature 219 228 8.0E-32 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RAM_13960 22215b2c5506693f639b602bd9fc0a43 315 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 2 149 3.1E-38 T 13-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 RAM_13960 22215b2c5506693f639b602bd9fc0a43 315 SUPERFAMILY SSF53671 2 309 1.28E-89 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 RAM_13960 22215b2c5506693f639b602bd9fc0a43 315 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 3 308 6.5E-83 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RAM_13960 22215b2c5506693f639b602bd9fc0a43 315 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 49 68 3.1E-18 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RAM_13960 22215b2c5506693f639b602bd9fc0a43 315 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 136 147 3.1E-18 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RAM_13960 22215b2c5506693f639b602bd9fc0a43 315 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 273 296 3.1E-18 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RAM_13960 22215b2c5506693f639b602bd9fc0a43 315 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 261 270 3.1E-18 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RAM_13960 22215b2c5506693f639b602bd9fc0a43 315 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 49 56 - T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RAM_13960 22215b2c5506693f639b602bd9fc0a43 315 Gene3D G3DSA:3.40.50.1370 3 305 7.5E-86 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 RAM_13960 22215b2c5506693f639b602bd9fc0a43 315 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 1 310 38.312 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RAM_13960 22215b2c5506693f639b602bd9fc0a43 315 Gene3D G3DSA:3.40.50.1370 136 295 7.5E-86 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 RAM_13960 22215b2c5506693f639b602bd9fc0a43 315 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 156 306 3.8E-22 T 13-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 RAM_46075 3654b8ce532e23341c94d6e2ade13a55 130 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 11 116 8.0E-8 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RAM_46075 3654b8ce532e23341c94d6e2ade13a55 130 SUPERFAMILY SSF54593 12 122 2.01E-20 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_46075 3654b8ce532e23341c94d6e2ade13a55 130 Gene3D G3DSA:3.10.180.10 7 123 1.2E-16 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_35975 afc9270b8515e37f23896198cc8151d5 257 SUPERFAMILY SSF57716 213 256 1.74E-8 T 13-10-2018 RAM_35975 afc9270b8515e37f23896198cc8151d5 257 SMART SM00898 1 125 9.8E-13 T 13-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 RAM_35975 afc9270b8515e37f23896198cc8151d5 257 SMART SM01232 133 221 1.9E-21 T 13-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 RAM_35975 afc9270b8515e37f23896198cc8151d5 257 Gene3D G3DSA:1.10.8.50 133 257 1.6E-30 T 13-10-2018 RAM_35975 afc9270b8515e37f23896198cc8151d5 257 Gene3D G3DSA:3.20.190.10 1 132 1.3E-19 T 13-10-2018 IPR035937 MutM-like, N-terminal RAM_35975 afc9270b8515e37f23896198cc8151d5 257 SUPERFAMILY SSF81624 4 137 1.7E-16 T 13-10-2018 IPR035937 MutM-like, N-terminal RAM_35975 afc9270b8515e37f23896198cc8151d5 257 SUPERFAMILY SSF46946 133 216 3.39E-20 T 13-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 RAM_35975 afc9270b8515e37f23896198cc8151d5 257 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 124 9.1E-18 T 13-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 RAM_35975 afc9270b8515e37f23896198cc8151d5 257 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 139 216 3.3E-18 T 13-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 RAM_44315 f41ab926608822c6e24e50aeff041417 226 Gene3D G3DSA:1.10.10.10 123 225 8.1E-32 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_44315 f41ab926608822c6e24e50aeff041417 226 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 220 3.4E-25 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_44315 f41ab926608822c6e24e50aeff041417 226 SUPERFAMILY SSF52172 2 173 6.26E-40 T 13-10-2018 IPR011006 CheY-like superfamily RAM_44315 f41ab926608822c6e24e50aeff041417 226 SMART SM00862 145 220 2.1E-24 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_44315 f41ab926608822c6e24e50aeff041417 226 SMART SM00448 1 112 2.5E-38 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_44315 f41ab926608822c6e24e50aeff041417 226 Gene3D G3DSA:3.40.50.2300 1 121 1.2E-35 T 13-10-2018 RAM_44315 f41ab926608822c6e24e50aeff041417 226 Pfam PF00072 Response regulator receiver domain 4 112 2.5E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_43055 d1c0d6e89d7de94cb38cab5bb8597093 203 SUPERFAMILY SSF50891 79 201 2.28E-41 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily RAM_43055 d1c0d6e89d7de94cb38cab5bb8597093 203 Gene3D G3DSA:2.40.100.10 73 202 6.7E-56 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily RAM_43055 d1c0d6e89d7de94cb38cab5bb8597093 203 SMART SM00796 3 190 4.0E-87 T 13-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D RAM_43055 d1c0d6e89d7de94cb38cab5bb8597093 203 Gene3D G3DSA:3.30.1360.40 2 72 4.4E-16 T 13-10-2018 RAM_43055 d1c0d6e89d7de94cb38cab5bb8597093 203 Pfam PF02682 Carboxyltransferase domain, subdomain C and D 3 190 9.1E-68 T 13-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D RAM_43055 d1c0d6e89d7de94cb38cab5bb8597093 203 SUPERFAMILY SSF160467 4 83 4.84E-14 T 13-10-2018 RAM_25940 01e00a1972744cee2c31e32bc0332451 314 Pfam PF03466 LysR substrate binding domain 115 297 1.4E-8 T 13-10-2018 IPR005119 LysR, substrate-binding RAM_25940 01e00a1972744cee2c31e32bc0332451 314 SUPERFAMILY SSF53850 90 295 1.48E-23 T 13-10-2018 RAM_25940 01e00a1972744cee2c31e32bc0332451 314 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 64 4.6E-16 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_25940 01e00a1972744cee2c31e32bc0332451 314 Gene3D G3DSA:1.10.10.10 1 87 1.1E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_25940 01e00a1972744cee2c31e32bc0332451 314 Gene3D G3DSA:3.40.190.10 171 269 1.1E-46 T 13-10-2018 RAM_25940 01e00a1972744cee2c31e32bc0332451 314 Gene3D G3DSA:3.40.190.10 90 293 1.1E-46 T 13-10-2018 RAM_25940 01e00a1972744cee2c31e32bc0332451 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 8.4E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_25940 01e00a1972744cee2c31e32bc0332451 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 8.4E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_25940 01e00a1972744cee2c31e32bc0332451 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 8.4E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_25940 01e00a1972744cee2c31e32bc0332451 314 SUPERFAMILY SSF46785 3 84 8.94E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_34665 6154806fd4c80a4143f44cd90d6d9709 418 Pfam PF04138 GtrA-like protein 289 406 3.7E-9 T 13-10-2018 IPR007267 GtrA-like protein GO:0000271|GO:0016021 RAM_34665 6154806fd4c80a4143f44cd90d6d9709 418 Pfam PF00535 Glycosyl transferase family 2 25 192 7.1E-24 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RAM_34665 6154806fd4c80a4143f44cd90d6d9709 418 Gene3D G3DSA:3.90.550.10 18 264 5.2E-44 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_34665 6154806fd4c80a4143f44cd90d6d9709 418 SUPERFAMILY SSF53448 20 234 7.78E-37 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_27980 dbdba63aa0d1f4e9aff1d3c97c592077 145 SUPERFAMILY SSF50475 6 129 2.55E-21 T 13-10-2018 RAM_27980 dbdba63aa0d1f4e9aff1d3c97c592077 145 Pfam PF12900 Pyridoxamine 5'-phosphate oxidase 12 129 2.5E-18 T 13-10-2018 IPR024747 Pyridoxamine 5'-phosphate oxidase-related RAM_27980 dbdba63aa0d1f4e9aff1d3c97c592077 145 Gene3D G3DSA:2.30.110.10 2 138 6.5E-31 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_37735 527f75683efefb0f1f1643af78ba91fd 510 Pfam PF01565 FAD binding domain 26 160 4.0E-17 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RAM_37735 527f75683efefb0f1f1643af78ba91fd 510 SUPERFAMILY SSF56176 3 198 9.35E-34 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RAM_37735 527f75683efefb0f1f1643af78ba91fd 510 Gene3D G3DSA:3.40.462.20 215 483 1.8E-202 T 13-10-2018 RAM_37735 527f75683efefb0f1f1643af78ba91fd 510 Pfam PF08031 Berberine and berberine like 455 507 3.5E-17 T 13-10-2018 IPR012951 Berberine/berberine-like GO:0016491|GO:0050660|GO:0055114 RAM_37735 527f75683efefb0f1f1643af78ba91fd 510 Gene3D G3DSA:3.30.465.40 3 497 1.8E-202 T 13-10-2018 RAM_38050 5d0866bf0002467e4f3d03903d20c180 476 Pfam PF02397 Bacterial sugar transferase 290 470 1.1E-58 T 13-10-2018 IPR003362 Bacterial sugar transferase RAM_38050 5d0866bf0002467e4f3d03903d20c180 476 Gene3D G3DSA:3.40.50.720 159 275 1.3E-5 T 13-10-2018 RAM_38050 5d0866bf0002467e4f3d03903d20c180 476 TIGRFAM TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 66 473 3.3E-97 T 13-10-2018 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase RAM_33370 7acf93adfd48da92848b4145c8000a7b 249 Gene3D G3DSA:3.30.565.10 120 248 1.1E-16 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_33370 7acf93adfd48da92848b4145c8000a7b 249 SUPERFAMILY SSF52091 10 117 5.49E-7 T 13-10-2018 IPR036513 STAS domain superfamily RAM_33370 7acf93adfd48da92848b4145c8000a7b 249 Gene3D G3DSA:3.30.750.24 5 119 1.4E-10 T 13-10-2018 IPR036513 STAS domain superfamily RAM_35465 9ced298391090bd62309b4735cb41272 224 SMART SM00862 145 221 6.5E-27 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_35465 9ced298391090bd62309b4735cb41272 224 SMART SM00448 2 110 3.3E-37 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_35465 9ced298391090bd62309b4735cb41272 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 221 1.2E-24 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_35465 9ced298391090bd62309b4735cb41272 224 Gene3D G3DSA:1.10.10.10 123 224 2.0E-33 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_35465 9ced298391090bd62309b4735cb41272 224 Gene3D G3DSA:3.40.50.2300 1 121 2.1E-30 T 13-10-2018 RAM_35465 9ced298391090bd62309b4735cb41272 224 SUPERFAMILY SSF52172 3 122 1.1E-34 T 13-10-2018 IPR011006 CheY-like superfamily RAM_35465 9ced298391090bd62309b4735cb41272 224 SUPERFAMILY SSF46894 123 222 1.11E-28 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_35465 9ced298391090bd62309b4735cb41272 224 Pfam PF00072 Response regulator receiver domain 5 110 1.9E-21 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_41940 d7710d2135cd9e1ac17e8dd3458b6b47 130 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 3 124 5.4E-15 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_41940 d7710d2135cd9e1ac17e8dd3458b6b47 130 Pfam PF08281 Sigma-70, region 4 66 120 1.3E-13 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_41940 d7710d2135cd9e1ac17e8dd3458b6b47 130 Gene3D G3DSA:1.10.10.10 62 126 1.1E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_41940 d7710d2135cd9e1ac17e8dd3458b6b47 130 SUPERFAMILY SSF88659 65 125 3.92E-11 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_03150 a1bad7dfc5fc60c1abdb35d1caaadbd8 396 PRINTS PR00359 B-class P450 signature 139 155 1.8E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03150 a1bad7dfc5fc60c1abdb35d1caaadbd8 396 PRINTS PR00359 B-class P450 signature 193 215 1.8E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03150 a1bad7dfc5fc60c1abdb35d1caaadbd8 396 PRINTS PR00359 B-class P450 signature 345 356 1.8E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03150 a1bad7dfc5fc60c1abdb35d1caaadbd8 396 PRINTS PR00359 B-class P450 signature 92 103 1.8E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03150 a1bad7dfc5fc60c1abdb35d1caaadbd8 396 PRINTS PR00359 B-class P450 signature 315 330 1.8E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03150 a1bad7dfc5fc60c1abdb35d1caaadbd8 396 PRINTS PR00359 B-class P450 signature 156 171 1.8E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03150 a1bad7dfc5fc60c1abdb35d1caaadbd8 396 PRINTS PR00359 B-class P450 signature 287 314 1.8E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03150 a1bad7dfc5fc60c1abdb35d1caaadbd8 396 PRINTS PR00359 B-class P450 signature 269 280 1.8E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03150 a1bad7dfc5fc60c1abdb35d1caaadbd8 396 PRINTS PR00359 B-class P450 signature 336 345 1.8E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03150 a1bad7dfc5fc60c1abdb35d1caaadbd8 396 Pfam PF00067 Cytochrome P450 189 392 2.5E-27 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_03150 a1bad7dfc5fc60c1abdb35d1caaadbd8 396 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 338 347 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RAM_03150 a1bad7dfc5fc60c1abdb35d1caaadbd8 396 Gene3D G3DSA:1.10.630.10 7 396 6.4E-111 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_03150 a1bad7dfc5fc60c1abdb35d1caaadbd8 396 PRINTS PR00385 P450 superfamily signature 234 251 1.1E-8 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_03150 a1bad7dfc5fc60c1abdb35d1caaadbd8 396 PRINTS PR00385 P450 superfamily signature 269 280 1.1E-8 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_03150 a1bad7dfc5fc60c1abdb35d1caaadbd8 396 PRINTS PR00385 P450 superfamily signature 345 356 1.1E-8 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_03150 a1bad7dfc5fc60c1abdb35d1caaadbd8 396 PRINTS PR00385 P450 superfamily signature 336 345 1.1E-8 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_03150 a1bad7dfc5fc60c1abdb35d1caaadbd8 396 SUPERFAMILY SSF48264 10 396 2.1E-91 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_13170 60a39ca02e3bf56d1291ae09c3a0dcfd 708 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 10 96 4.2E-16 T 13-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 RAM_13170 60a39ca02e3bf56d1291ae09c3a0dcfd 708 Gene3D G3DSA:2.60.40.1180 590 702 3.0E-20 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta RAM_13170 60a39ca02e3bf56d1291ae09c3a0dcfd 708 SUPERFAMILY SSF51011 591 701 1.63E-25 T 13-10-2018 RAM_13170 60a39ca02e3bf56d1291ae09c3a0dcfd 708 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 6 701 0.0 T 13-10-2018 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 RAM_13170 60a39ca02e3bf56d1291ae09c3a0dcfd 708 SUPERFAMILY SSF81296 5 147 1.06E-42 T 13-10-2018 IPR014756 Immunoglobulin E-set RAM_13170 60a39ca02e3bf56d1291ae09c3a0dcfd 708 SMART SM00642 158 568 2.2E-9 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RAM_13170 60a39ca02e3bf56d1291ae09c3a0dcfd 708 Pfam PF00128 Alpha amylase, catalytic domain 311 531 3.4E-8 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RAM_13170 60a39ca02e3bf56d1291ae09c3a0dcfd 708 Pfam PF00128 Alpha amylase, catalytic domain 189 293 8.4E-9 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RAM_13170 60a39ca02e3bf56d1291ae09c3a0dcfd 708 Gene3D G3DSA:2.60.40.10 1 136 4.9E-43 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_13170 60a39ca02e3bf56d1291ae09c3a0dcfd 708 SUPERFAMILY SSF51445 137 576 1.7E-136 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_13170 60a39ca02e3bf56d1291ae09c3a0dcfd 708 Gene3D G3DSA:3.20.20.80 138 582 1.9E-183 T 13-10-2018 RAM_38815 89437f62408bd52b445f13e2b234e1e4 420 SUPERFAMILY SSF53383 4 415 5.44E-170 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_38815 89437f62408bd52b445f13e2b234e1e4 420 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 8 415 50.246 T 13-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 RAM_38815 89437f62408bd52b445f13e2b234e1e4 420 Gene3D G3DSA:3.90.1150.10 11 392 2.3E-172 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_38815 89437f62408bd52b445f13e2b234e1e4 420 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 223 239 - T 13-10-2018 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 RAM_38815 89437f62408bd52b445f13e2b234e1e4 420 Gene3D G3DSA:3.40.640.10 38 289 2.3E-172 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_38815 89437f62408bd52b445f13e2b234e1e4 420 PIRSF PIRSF000412 2 417 2.7E-154 T 13-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 RAM_38815 89437f62408bd52b445f13e2b234e1e4 420 Pfam PF00464 Serine hydroxymethyltransferase 9 387 1.2E-159 T 13-10-2018 IPR039429 Serine hydroxymethyltransferase-like domain KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 RAM_22830 f59a62db09f7503ac39d628c5919c7b4 573 Gene3D G3DSA:3.30.300.30 448 568 2.2E-38 T 13-10-2018 RAM_22830 f59a62db09f7503ac39d628c5919c7b4 573 SUPERFAMILY SSF56801 12 559 1.96E-105 T 13-10-2018 RAM_22830 f59a62db09f7503ac39d628c5919c7b4 573 Pfam PF00501 AMP-binding enzyme 19 453 5.6E-82 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_22830 f59a62db09f7503ac39d628c5919c7b4 573 Gene3D G3DSA:3.40.50.12780 3 447 7.6E-145 T 13-10-2018 RAM_43810 ea814062766460c351edc767eb55741e 286 SUPERFAMILY SSF52540 4 231 1.01E-66 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_43810 ea814062766460c351edc767eb55741e 286 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_43810 ea814062766460c351edc767eb55741e 286 Gene3D G3DSA:3.40.50.300 1 280 2.9E-71 T 13-10-2018 RAM_43810 ea814062766460c351edc767eb55741e 286 Pfam PF00005 ABC transporter 24 166 5.8E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_43810 ea814062766460c351edc767eb55741e 286 SMART SM00382 33 215 1.3E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_32420 d2757b03ebb85bb478018bc5155ff215 310 SUPERFAMILY SSF82114 164 300 4.8E-38 T 13-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 RAM_32420 d2757b03ebb85bb478018bc5155ff215 310 SUPERFAMILY SSF52374 1 165 6.62E-29 T 13-10-2018 RAM_32420 d2757b03ebb85bb478018bc5155ff215 310 Gene3D G3DSA:3.40.50.620 1 175 6.6E-58 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAM_32420 d2757b03ebb85bb478018bc5155ff215 310 Pfam PF06574 FAD synthetase 1 133 1.2E-48 T 13-10-2018 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 RAM_32420 d2757b03ebb85bb478018bc5155ff215 310 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 2 299 8.7E-69 T 13-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 RAM_32420 d2757b03ebb85bb478018bc5155ff215 310 Pfam PF01687 Riboflavin kinase 174 299 3.0E-32 T 13-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 RAM_32420 d2757b03ebb85bb478018bc5155ff215 310 PIRSF PIRSF004491 1 303 8.9E-92 T 13-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 RAM_32420 d2757b03ebb85bb478018bc5155ff215 310 SMART SM00904 173 300 1.6E-46 T 13-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 RAM_32420 d2757b03ebb85bb478018bc5155ff215 310 Gene3D G3DSA:2.40.30.30 176 306 2.2E-40 T 13-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 RAM_05420 15f1b00b0c0b4914d709eed0654aa626 214 Pfam PF01596 O-methyltransferase 32 210 4.1E-27 T 13-10-2018 IPR002935 O-methyltransferase, family 3 GO:0008171 RAM_05420 15f1b00b0c0b4914d709eed0654aa626 214 Gene3D G3DSA:3.40.50.150 11 213 7.4E-57 T 13-10-2018 RAM_05420 15f1b00b0c0b4914d709eed0654aa626 214 SUPERFAMILY SSF53335 36 211 1.22E-29 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_12415 f576fa2fd46ae4effd9cb8447c914f67 426 SUPERFAMILY SSF53850 37 423 2.57E-52 T 13-10-2018 RAM_12415 f576fa2fd46ae4effd9cb8447c914f67 426 Gene3D G3DSA:3.40.190.10 150 415 1.8E-65 T 13-10-2018 RAM_12415 f576fa2fd46ae4effd9cb8447c914f67 426 Gene3D G3DSA:3.40.190.10 55 355 1.8E-65 T 13-10-2018 RAM_12415 f576fa2fd46ae4effd9cb8447c914f67 426 Pfam PF13416 Bacterial extracellular solute-binding protein 54 358 4.0E-31 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein RAM_05160 156b74ffb146f0ad9274c80945de73d0 273 Pfam PF00535 Glycosyl transferase family 2 1 182 1.1E-16 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RAM_05160 156b74ffb146f0ad9274c80945de73d0 273 SUPERFAMILY SSF53448 1 245 5.63E-39 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_05160 156b74ffb146f0ad9274c80945de73d0 273 Gene3D G3DSA:3.90.550.10 1 235 5.7E-36 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_25800 2a54dc96426a0277b324f31c8bd50be1 532 Pfam PF02838 Glycosyl hydrolase family 20, domain 2 34 171 3.6E-21 T 13-10-2018 IPR015882 Beta-hexosaminidase, bacterial type, N-terminal RAM_25800 2a54dc96426a0277b324f31c8bd50be1 532 Gene3D G3DSA:3.30.379.10 35 174 2.9E-171 T 13-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 RAM_25800 2a54dc96426a0277b324f31c8bd50be1 532 PRINTS PR00738 Glycosyl hydrolase family 20 signature 169 186 1.2E-46 T 13-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RAM_25800 2a54dc96426a0277b324f31c8bd50be1 532 PRINTS PR00738 Glycosyl hydrolase family 20 signature 454 470 1.2E-46 T 13-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RAM_25800 2a54dc96426a0277b324f31c8bd50be1 532 PRINTS PR00738 Glycosyl hydrolase family 20 signature 305 323 1.2E-46 T 13-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RAM_25800 2a54dc96426a0277b324f31c8bd50be1 532 PRINTS PR00738 Glycosyl hydrolase family 20 signature 327 340 1.2E-46 T 13-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RAM_25800 2a54dc96426a0277b324f31c8bd50be1 532 PRINTS PR00738 Glycosyl hydrolase family 20 signature 257 274 1.2E-46 T 13-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RAM_25800 2a54dc96426a0277b324f31c8bd50be1 532 PRINTS PR00738 Glycosyl hydrolase family 20 signature 472 489 1.2E-46 T 13-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RAM_25800 2a54dc96426a0277b324f31c8bd50be1 532 PRINTS PR00738 Glycosyl hydrolase family 20 signature 127 147 1.2E-46 T 13-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RAM_25800 2a54dc96426a0277b324f31c8bd50be1 532 PRINTS PR00738 Glycosyl hydrolase family 20 signature 198 219 1.2E-46 T 13-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RAM_25800 2a54dc96426a0277b324f31c8bd50be1 532 SUPERFAMILY SSF51445 175 518 2.44E-102 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_25800 2a54dc96426a0277b324f31c8bd50be1 532 Gene3D G3DSA:3.20.20.80 175 513 2.9E-171 T 13-10-2018 RAM_25800 2a54dc96426a0277b324f31c8bd50be1 532 Pfam PF00728 Glycosyl hydrolase family 20, catalytic domain 175 490 6.4E-77 T 13-10-2018 IPR015883 Glycoside hydrolase family 20, catalytic domain GO:0004553|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 RAM_25800 2a54dc96426a0277b324f31c8bd50be1 532 SUPERFAMILY SSF55545 29 174 7.98E-26 T 13-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 RAM_10965 9eb5ac28aa51c834f2d2bd7b16b2d012 215 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 23 37 4.6E-7 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_10965 9eb5ac28aa51c834f2d2bd7b16b2d012 215 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 37 53 4.6E-7 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_10965 9eb5ac28aa51c834f2d2bd7b16b2d012 215 Gene3D G3DSA:1.10.10.10 1 67 2.6E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_10965 9eb5ac28aa51c834f2d2bd7b16b2d012 215 SMART SM00345 4 63 2.0E-19 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_10965 9eb5ac28aa51c834f2d2bd7b16b2d012 215 Gene3D G3DSA:1.20.120.530 73 210 1.4E-32 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_10965 9eb5ac28aa51c834f2d2bd7b16b2d012 215 SUPERFAMILY SSF48008 78 209 7.59E-30 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_10965 9eb5ac28aa51c834f2d2bd7b16b2d012 215 SMART SM00895 81 202 3.2E-23 T 13-10-2018 IPR011711 GntR, C-terminal RAM_10965 9eb5ac28aa51c834f2d2bd7b16b2d012 215 SUPERFAMILY SSF46785 2 67 1.06E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_10965 9eb5ac28aa51c834f2d2bd7b16b2d012 215 Pfam PF00392 Bacterial regulatory proteins, gntR family 2 63 8.3E-19 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_10965 9eb5ac28aa51c834f2d2bd7b16b2d012 215 Pfam PF07729 FCD domain 81 201 5.7E-27 T 13-10-2018 IPR011711 GntR, C-terminal RAM_33700 4491aca29c6cf032d1d56bac81c25993 132 Gene3D G3DSA:1.10.1740.70 2 62 5.5E-7 T 13-10-2018 RAM_33700 4491aca29c6cf032d1d56bac81c25993 132 SUPERFAMILY SSF140376 3 62 1.44E-14 T 13-10-2018 IPR037205 ChaB superfamily RAM_33700 4491aca29c6cf032d1d56bac81c25993 132 Pfam PF07498 Rho termination factor, N-terminal domain 95 122 3.0E-6 T 13-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 RAM_33700 4491aca29c6cf032d1d56bac81c25993 132 Pfam PF06150 ChaB 7 61 1.7E-17 T 13-10-2018 IPR009317 ChaB RAM_04345 95201c38ff8d0835bc12c5d04af39969 137 Gene3D G3DSA:1.20.1300.10 16 130 6.3E-23 T 13-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_04345 95201c38ff8d0835bc12c5d04af39969 137 SUPERFAMILY SSF81343 9 132 1.9E-32 T 13-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_04345 95201c38ff8d0835bc12c5d04af39969 137 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 13 117 1.1E-14 T 13-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_34230 da75d26bd5eb8aa76ad73eb324d2bd0b 474 Gene3D G3DSA:1.20.1740.10 25 473 5.4E-113 T 13-10-2018 RAM_34230 da75d26bd5eb8aa76ad73eb324d2bd0b 474 PIRSF PIRSF006060 10 472 7.5E-87 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RAM_34230 da75d26bd5eb8aa76ad73eb324d2bd0b 474 Pfam PF13520 Amino acid permease 29 441 7.4E-55 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RAM_19820 62354050f08ae683d870aa4da8f5baf8 263 Pfam PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain 12 137 2.2E-10 T 13-10-2018 IPR024344 Mycothiol-dependent maleylpyruvate isomerase, metal-binding domain GO:0046872 RAM_19820 62354050f08ae683d870aa4da8f5baf8 263 SUPERFAMILY SSF109854 16 143 1.25E-8 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_19820 62354050f08ae683d870aa4da8f5baf8 263 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 15 232 1.3E-16 T 13-10-2018 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type RAM_19820 62354050f08ae683d870aa4da8f5baf8 263 Gene3D G3DSA:1.20.120.450 5 134 4.0E-5 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_19820 62354050f08ae683d870aa4da8f5baf8 263 Pfam PF07398 MDMPI C-terminal domain 150 251 6.6E-9 T 13-10-2018 IPR010872 MDMPI C-terminal RAM_02940 934b021a8f40939851fcdbe369cebefb 361 Gene3D G3DSA:3.20.20.30 1 361 7.2E-115 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_02940 934b021a8f40939851fcdbe369cebefb 361 SUPERFAMILY SSF51679 4 352 5.59E-83 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_02940 934b021a8f40939851fcdbe369cebefb 361 Pfam PF00296 Luciferase-like monooxygenase 20 293 1.5E-30 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_02940 934b021a8f40939851fcdbe369cebefb 361 PIRSF PIRSF000337 278 360 1.8E-17 T 13-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 RAM_02940 934b021a8f40939851fcdbe369cebefb 361 PIRSF PIRSF000337 3 279 5.3E-65 T 13-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 RAM_43530 2ba7dc32d4b145d30d6972a282d419ed 143 SUPERFAMILY SSF46785 5 137 3.21E-30 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_43530 2ba7dc32d4b145d30d6972a282d419ed 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 68 83 2.1E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_43530 2ba7dc32d4b145d30d6972a282d419ed 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 117 137 2.1E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_43530 2ba7dc32d4b145d30d6972a282d419ed 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 87 103 2.1E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_43530 2ba7dc32d4b145d30d6972a282d419ed 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 51 67 2.1E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_43530 2ba7dc32d4b145d30d6972a282d419ed 143 Pfam PF01047 MarR family 34 91 1.5E-16 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_43530 2ba7dc32d4b145d30d6972a282d419ed 143 ProSitePatterns PS01117 MarR-type HTH domain signature. 66 100 - T 13-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site RAM_43530 2ba7dc32d4b145d30d6972a282d419ed 143 SMART SM00347 27 127 6.4E-24 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_43530 2ba7dc32d4b145d30d6972a282d419ed 143 Gene3D G3DSA:1.10.10.10 8 142 1.0E-34 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_11945 f039299f7ce8d53653751f186a079a5f 201 ProSitePatterns PS00159 KDPG and KHG aldolases active site. 36 45 - T 13-10-2018 IPR031337 KDPG/KHG aldolase, active site 1 KEGG: 00030+4.1.2.14|KEGG: 00330+4.1.3.16|KEGG: 00630+4.1.3.16|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 RAM_11945 f039299f7ce8d53653751f186a079a5f 201 Pfam PF01081 KDPG and KHG aldolase 8 184 5.9E-66 T 13-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 RAM_11945 f039299f7ce8d53653751f186a079a5f 201 SUPERFAMILY SSF51569 6 185 3.48E-62 T 13-10-2018 RAM_11945 f039299f7ce8d53653751f186a079a5f 201 ProSitePatterns PS00160 KDPG and KHG aldolases Schiff-base forming residue. 124 137 - T 13-10-2018 IPR031338 KDPG/KHG aldolase, active site 2 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 RAM_11945 f039299f7ce8d53653751f186a079a5f 201 Gene3D G3DSA:3.20.20.70 3 201 2.4E-70 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_11945 f039299f7ce8d53653751f186a079a5f 201 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 6 193 5.5E-70 T 13-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 RAM_12475 afc6d14bc7518cca2b5c2fc02fc7d307 273 Pfam PF00293 NUDIX domain 17 128 2.9E-17 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RAM_12475 afc6d14bc7518cca2b5c2fc02fc7d307 273 SUPERFAMILY SSF55811 3 140 2.57E-28 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RAM_12475 afc6d14bc7518cca2b5c2fc02fc7d307 273 Gene3D G3DSA:3.90.79.10 14 144 2.7E-22 T 13-10-2018 RAM_12475 afc6d14bc7518cca2b5c2fc02fc7d307 273 Gene3D G3DSA:3.40.50.1010 166 266 4.3E-5 T 13-10-2018 RAM_19955 f86a4435cf6cf650af106b352519ee09 271 Pfam PF03537 Glycoside-hydrolase family GH114 46 256 1.0E-51 T 13-10-2018 IPR004352 Glycoside-hydrolase family GH114, TIM-barrel domain RAM_19955 f86a4435cf6cf650af106b352519ee09 271 SUPERFAMILY SSF51445 43 240 2.32E-17 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_13620 2fdd6259bf49bc3ca016586dfdfcdfd2 183 SUPERFAMILY SSF48317 8 173 2.49E-17 T 13-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily RAM_13620 2fdd6259bf49bc3ca016586dfdfcdfd2 183 Gene3D G3DSA:1.20.144.10 97 181 2.4E-7 T 13-10-2018 RAM_33490 2098874979e94d230ae72b8f632ce483 191 SUPERFAMILY SSF88659 118 180 3.27E-12 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_33490 2098874979e94d230ae72b8f632ce483 191 Gene3D G3DSA:1.10.1740.10 2 91 2.8E-29 T 13-10-2018 RAM_33490 2098874979e94d230ae72b8f632ce483 191 Pfam PF08281 Sigma-70, region 4 126 176 1.1E-12 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_33490 2098874979e94d230ae72b8f632ce483 191 Pfam PF04542 Sigma-70 region 2 31 94 1.2E-13 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_33490 2098874979e94d230ae72b8f632ce483 191 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 25 178 6.0E-26 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_33490 2098874979e94d230ae72b8f632ce483 191 Gene3D G3DSA:1.10.10.10 120 182 2.1E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_33490 2098874979e94d230ae72b8f632ce483 191 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 50 81 - T 13-10-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_33490 2098874979e94d230ae72b8f632ce483 191 SUPERFAMILY SSF88946 6 108 1.18E-21 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_45540 ad6fa93574f1306d9b4a6981a1db4e1e 492 Gene3D G3DSA:1.20.1250.20 248 475 2.0E-12 T 13-10-2018 RAM_45540 ad6fa93574f1306d9b4a6981a1db4e1e 492 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 8 401 2.2E-80 T 13-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 RAM_45540 ad6fa93574f1306d9b4a6981a1db4e1e 492 SUPERFAMILY SSF103473 3 477 9.02E-61 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_45540 ad6fa93574f1306d9b4a6981a1db4e1e 492 Gene3D G3DSA:1.20.1720.10 1 180 1.5E-43 T 13-10-2018 RAM_45540 ad6fa93574f1306d9b4a6981a1db4e1e 492 Pfam PF07690 Major Facilitator Superfamily 3 390 2.8E-45 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_28575 9644f893f63c29c7399afd69eb7bd3e7 231 SMART SM00448 1 112 5.3E-39 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_28575 9644f893f63c29c7399afd69eb7bd3e7 231 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 226 5.6E-24 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_28575 9644f893f63c29c7399afd69eb7bd3e7 231 SUPERFAMILY SSF52172 2 184 5.58E-40 T 13-10-2018 IPR011006 CheY-like superfamily RAM_28575 9644f893f63c29c7399afd69eb7bd3e7 231 Gene3D G3DSA:1.10.10.10 129 230 6.6E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_28575 9644f893f63c29c7399afd69eb7bd3e7 231 Pfam PF00072 Response regulator receiver domain 4 113 4.1E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_28575 9644f893f63c29c7399afd69eb7bd3e7 231 Gene3D G3DSA:3.40.50.2300 1 122 1.5E-36 T 13-10-2018 RAM_28575 9644f893f63c29c7399afd69eb7bd3e7 231 SMART SM00862 151 226 4.5E-26 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_10245 810615834c600dc09ce12be9f0568e1d 418 Gene3D G3DSA:1.10.1740.10 3 78 1.7E-5 T 13-10-2018 RAM_10245 810615834c600dc09ce12be9f0568e1d 418 SUPERFAMILY SSF88946 8 78 2.0E-10 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_10245 810615834c600dc09ce12be9f0568e1d 418 Pfam PF04542 Sigma-70 region 2 16 81 8.0E-8 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_10245 810615834c600dc09ce12be9f0568e1d 418 SUPERFAMILY SSF88659 109 168 2.43E-9 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_10245 810615834c600dc09ce12be9f0568e1d 418 Gene3D G3DSA:1.10.10.10 118 170 1.1E-7 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_10245 810615834c600dc09ce12be9f0568e1d 418 Pfam PF08281 Sigma-70, region 4 118 165 9.8E-9 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_40295 1b67e489513b2359e1c86ae1da22cb6d 409 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 144 159 1.4E-11 T 13-10-2018 RAM_40295 1b67e489513b2359e1c86ae1da22cb6d 409 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 277 292 1.4E-11 T 13-10-2018 RAM_40295 1b67e489513b2359e1c86ae1da22cb6d 409 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 1.4E-11 T 13-10-2018 RAM_40295 1b67e489513b2359e1c86ae1da22cb6d 409 Gene3D G3DSA:3.30.9.50 41 267 3.4E-64 T 13-10-2018 RAM_40295 1b67e489513b2359e1c86ae1da22cb6d 409 Gene3D G3DSA:3.50.50.60 8 334 3.4E-64 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_40295 1b67e489513b2359e1c86ae1da22cb6d 409 SUPERFAMILY SSF51905 6 366 2.64E-48 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_40295 1b67e489513b2359e1c86ae1da22cb6d 409 Pfam PF01494 FAD binding domain 5 314 3.4E-24 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_40920 8a838caafb9ed3e99bd6a142006a3a4c 201 SUPERFAMILY SSF51182 1 198 1.63E-69 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RAM_40920 8a838caafb9ed3e99bd6a142006a3a4c 201 Gene3D G3DSA:2.60.120.10 1 201 5.4E-68 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_40920 8a838caafb9ed3e99bd6a142006a3a4c 201 ProDom PD001462 35-EPIMERASE DTDP-4-DEHYDRORHAMNOSE ISOMERASE RMLC EPIMERASE RELATED DTDP-6-DEOXY-D-GLUCOSE-35-EPIMERASE DTDP-4-KETO-6-DEOXY-D-GLUCOSE DTDP-4-KETO-6-DEOXYGLUCOSE-35-EPIMERASE DTDP-L-RHAMNOSE 1 178 1.0E-70 T 13-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 RAM_40920 8a838caafb9ed3e99bd6a142006a3a4c 201 Pfam PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase 6 177 3.1E-57 T 13-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 RAM_25680 542f084622b2299e4c0852ea1424012f 321 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 316 1.2E-19 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_25680 542f084622b2299e4c0852ea1424012f 321 SUPERFAMILY SSF161098 81 307 9.03E-59 T 13-10-2018 IPR035906 MetI-like superfamily RAM_25680 542f084622b2299e4c0852ea1424012f 321 Gene3D G3DSA:1.10.3720.10 77 319 1.5E-67 T 13-10-2018 IPR035906 MetI-like superfamily RAM_23460 5df60251eecf81ba93385a0df4847c21 389 Pfam PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 220 358 1.4E-14 T 13-10-2018 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0016758 Reactome: R-HSA-156588 RAM_23460 5df60251eecf81ba93385a0df4847c21 389 TIGRFAM TIGR01426 MGT: glycosyltransferase, MGT family 194 379 1.4E-34 T 13-10-2018 IPR006326 UDP-glycosyltransferase, MGT GO:0016758|GO:0016999 RAM_23460 5df60251eecf81ba93385a0df4847c21 389 SUPERFAMILY SSF53756 3 380 8.64E-70 T 13-10-2018 RAM_23460 5df60251eecf81ba93385a0df4847c21 389 Gene3D G3DSA:3.40.50.2000 204 365 4.0E-89 T 13-10-2018 RAM_23460 5df60251eecf81ba93385a0df4847c21 389 Gene3D G3DSA:3.40.50.2000 6 377 4.0E-89 T 13-10-2018 RAM_09625 41dbf2869dd32ae9428bea20b45081a2 232 SMART SM00448 6 116 5.4E-43 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_09625 41dbf2869dd32ae9428bea20b45081a2 232 Pfam PF00486 Transcriptional regulatory protein, C terminal 156 230 4.3E-21 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_09625 41dbf2869dd32ae9428bea20b45081a2 232 Gene3D G3DSA:3.40.50.2300 1 128 2.3E-37 T 13-10-2018 RAM_09625 41dbf2869dd32ae9428bea20b45081a2 232 Pfam PF00072 Response regulator receiver domain 8 116 4.1E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_09625 41dbf2869dd32ae9428bea20b45081a2 232 Gene3D G3DSA:1.10.10.10 129 231 5.5E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_09625 41dbf2869dd32ae9428bea20b45081a2 232 SUPERFAMILY SSF46894 132 231 8.79E-23 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_09625 41dbf2869dd32ae9428bea20b45081a2 232 SMART SM00862 154 230 4.5E-20 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_09625 41dbf2869dd32ae9428bea20b45081a2 232 SUPERFAMILY SSF52172 5 126 2.28E-40 T 13-10-2018 IPR011006 CheY-like superfamily RAM_24560 ff4d2367b3cc9cb69334c8f59d4793f1 225 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 131 205 2.2E-5 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_24560 ff4d2367b3cc9cb69334c8f59d4793f1 225 Pfam PF07730 Histidine kinase 22 86 4.3E-11 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_24560 ff4d2367b3cc9cb69334c8f59d4793f1 225 Gene3D G3DSA:3.30.565.10 100 222 3.3E-28 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_24560 ff4d2367b3cc9cb69334c8f59d4793f1 225 SUPERFAMILY SSF55874 117 221 2.05E-14 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_46470 7cab1251113484d6fe96229701744be9 268 SUPERFAMILY SSF102522 4 156 7.45E-54 T 13-10-2018 IPR023228 S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal RAM_46470 7cab1251113484d6fe96229701744be9 268 SUPERFAMILY SSF101852 171 261 3.53E-15 T 13-10-2018 IPR023227 S-adenosyl-l-methionine hydroxide adenosyltransferase, C-terminal RAM_46470 7cab1251113484d6fe96229701744be9 268 Pfam PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase 6 258 7.3E-75 T 13-10-2018 IPR002747 SAM-dependent chlorinase/fluorinase RAM_46470 7cab1251113484d6fe96229701744be9 268 PIRSF PIRSF006779 1 264 4.6E-70 T 13-10-2018 IPR002747 SAM-dependent chlorinase/fluorinase RAM_46470 7cab1251113484d6fe96229701744be9 268 Gene3D G3DSA:3.40.50.10790 87 161 6.3E-23 T 13-10-2018 IPR023228 S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal RAM_46470 7cab1251113484d6fe96229701744be9 268 Gene3D G3DSA:3.40.50.10790 1 86 6.8E-30 T 13-10-2018 IPR023228 S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal RAM_46470 7cab1251113484d6fe96229701744be9 268 Gene3D G3DSA:2.40.30.90 166 263 6.1E-18 T 13-10-2018 IPR023227 S-adenosyl-l-methionine hydroxide adenosyltransferase, C-terminal RAM_14000 1ca4b0e31803a17c192252b42f381e2c 105 Gene3D G3DSA:1.10.8.50 1 105 3.1E-42 T 13-10-2018 RAM_14000 1ca4b0e31803a17c192252b42f381e2c 105 SUPERFAMILY SSF46946 55 103 2.56E-6 T 13-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 RAM_14000 1ca4b0e31803a17c192252b42f381e2c 105 PIRSF PIRSF002134 38 104 1.4E-4 T 13-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_43720 28192e7b45c4255960c35292304c52dc 215 SUPERFAMILY SSF54106 168 212 2.22E-5 T 13-10-2018 RAM_43720 28192e7b45c4255960c35292304c52dc 215 Gene3D G3DSA:1.10.530.10 8 115 1.8E-35 T 13-10-2018 RAM_43720 28192e7b45c4255960c35292304c52dc 215 SMART SM00257 167 215 1.1E-8 T 13-10-2018 IPR018392 LysM domain RAM_43720 28192e7b45c4255960c35292304c52dc 215 Pfam PF01476 LysM domain 168 212 2.2E-9 T 13-10-2018 IPR018392 LysM domain RAM_43720 28192e7b45c4255960c35292304c52dc 215 Pfam PF06737 Transglycosylase-like domain 39 110 3.6E-33 T 13-10-2018 IPR010618 Transglycosylase-like RAM_43720 28192e7b45c4255960c35292304c52dc 215 SUPERFAMILY SSF53955 38 115 4.5E-31 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily RAM_43720 28192e7b45c4255960c35292304c52dc 215 Gene3D G3DSA:3.10.350.10 167 213 2.4E-12 T 13-10-2018 IPR036779 LysM domain superfamily RAM_34755 0afd28f34cc60ac295a6384d8e4fa778 382 SUPERFAMILY SSF51658 8 381 1.05E-111 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily RAM_34755 0afd28f34cc60ac295a6384d8e4fa778 382 Gene3D G3DSA:3.20.20.150 3 382 4.6E-133 T 13-10-2018 RAM_34755 0afd28f34cc60ac295a6384d8e4fa778 382 PRINTS PR00688 Xylose isomerase signature 103 122 6.3E-55 T 13-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 RAM_34755 0afd28f34cc60ac295a6384d8e4fa778 382 PRINTS PR00688 Xylose isomerase signature 279 290 6.3E-55 T 13-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 RAM_34755 0afd28f34cc60ac295a6384d8e4fa778 382 PRINTS PR00688 Xylose isomerase signature 46 68 6.3E-55 T 13-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 RAM_34755 0afd28f34cc60ac295a6384d8e4fa778 382 PRINTS PR00688 Xylose isomerase signature 218 245 6.3E-55 T 13-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 RAM_34755 0afd28f34cc60ac295a6384d8e4fa778 382 PRINTS PR00688 Xylose isomerase signature 154 173 6.3E-55 T 13-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 RAM_34755 0afd28f34cc60ac295a6384d8e4fa778 382 PRINTS PR00688 Xylose isomerase signature 176 200 6.3E-55 T 13-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 RAM_34755 0afd28f34cc60ac295a6384d8e4fa778 382 PRINTS PR00688 Xylose isomerase signature 127 148 6.3E-55 T 13-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 RAM_34755 0afd28f34cc60ac295a6384d8e4fa778 382 PRINTS PR00688 Xylose isomerase signature 246 257 6.3E-55 T 13-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 RAM_34755 0afd28f34cc60ac295a6384d8e4fa778 382 TIGRFAM TIGR02631 xylA_Arthro: xylose isomerase 5 379 2.2E-199 T 13-10-2018 IPR013453 Xylose isomerase, actinobacteria GO:0009045|GO:0042732 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 RAM_34755 0afd28f34cc60ac295a6384d8e4fa778 382 Pfam PF01261 Xylose isomerase-like TIM barrel 42 263 5.2E-27 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain RAM_34755 0afd28f34cc60ac295a6384d8e4fa778 382 Hamap MF_00455 Xylose isomerase [xylA]. 1 378 34.282 T 13-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 RAM_19685 72b1ad03b1a7761e13ee51db102d3ea5 392 SUPERFAMILY SSF56645 4 246 2.09E-67 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_19685 72b1ad03b1a7761e13ee51db102d3ea5 392 SUPERFAMILY SSF47203 235 386 9.83E-17 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_19685 72b1ad03b1a7761e13ee51db102d3ea5 392 Gene3D G3DSA:1.10.540.10 2 123 8.4E-28 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_19685 72b1ad03b1a7761e13ee51db102d3ea5 392 Gene3D G3DSA:2.40.110.10 129 239 3.8E-35 T 13-10-2018 RAM_19685 72b1ad03b1a7761e13ee51db102d3ea5 392 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 131 220 1.2E-22 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RAM_19685 72b1ad03b1a7761e13ee51db102d3ea5 392 Gene3D G3DSA:1.20.140.10 240 391 4.9E-28 T 13-10-2018 RAM_19685 72b1ad03b1a7761e13ee51db102d3ea5 392 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 10 125 4.0E-21 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_19685 72b1ad03b1a7761e13ee51db102d3ea5 392 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 235 384 2.5E-18 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_31905 93f964aafa039d8bb9f83ee7dea7d9cf 318 SUPERFAMILY SSF51735 13 245 7.39E-48 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_31905 93f964aafa039d8bb9f83ee7dea7d9cf 318 Pfam PF00106 short chain dehydrogenase 16 210 1.3E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_31905 93f964aafa039d8bb9f83ee7dea7d9cf 318 Gene3D G3DSA:3.40.50.720 1 283 4.5E-81 T 13-10-2018 RAM_31905 93f964aafa039d8bb9f83ee7dea7d9cf 318 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 164 183 3.0E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_31905 93f964aafa039d8bb9f83ee7dea7d9cf 318 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 3.0E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_31905 93f964aafa039d8bb9f83ee7dea7d9cf 318 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 16 33 3.0E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_31905 93f964aafa039d8bb9f83ee7dea7d9cf 318 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 187 204 3.0E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_41830 ee032dad62e22f03fe9b8eb0128c4fb0 427 SMART SM01192 139 425 4.3E-205 T 13-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RAM_41830 ee032dad62e22f03fe9b8eb0128c4fb0 427 Gene3D G3DSA:3.20.20.120 129 426 1.4E-123 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RAM_41830 ee032dad62e22f03fe9b8eb0128c4fb0 427 Hamap MF_00318 Enolase [eno]. 2 411 43.97 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RAM_41830 ee032dad62e22f03fe9b8eb0128c4fb0 427 Gene3D G3DSA:3.30.390.10 1 127 6.0E-54 T 13-10-2018 IPR029017 Enolase-like, N-terminal RAM_41830 ee032dad62e22f03fe9b8eb0128c4fb0 427 PRINTS PR00148 Enolase signature 311 322 1.8E-43 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RAM_41830 ee032dad62e22f03fe9b8eb0128c4fb0 427 PRINTS PR00148 Enolase signature 363 380 1.8E-43 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RAM_41830 ee032dad62e22f03fe9b8eb0128c4fb0 427 PRINTS PR00148 Enolase signature 37 51 1.8E-43 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RAM_41830 ee032dad62e22f03fe9b8eb0128c4fb0 427 PRINTS PR00148 Enolase signature 161 174 1.8E-43 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RAM_41830 ee032dad62e22f03fe9b8eb0128c4fb0 427 PRINTS PR00148 Enolase signature 334 348 1.8E-43 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RAM_41830 ee032dad62e22f03fe9b8eb0128c4fb0 427 PRINTS PR00148 Enolase signature 107 123 1.8E-43 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RAM_41830 ee032dad62e22f03fe9b8eb0128c4fb0 427 SUPERFAMILY SSF54826 3 138 8.31E-53 T 13-10-2018 RAM_41830 ee032dad62e22f03fe9b8eb0128c4fb0 427 SMART SM01193 4 134 3.3E-87 T 13-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RAM_41830 ee032dad62e22f03fe9b8eb0128c4fb0 427 SUPERFAMILY SSF51604 140 422 4.08E-121 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RAM_41830 ee032dad62e22f03fe9b8eb0128c4fb0 427 Pfam PF03952 Enolase, N-terminal domain 4 133 5.6E-58 T 13-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RAM_41830 ee032dad62e22f03fe9b8eb0128c4fb0 427 Pfam PF00113 Enolase, C-terminal TIM barrel domain 140 422 2.0E-122 T 13-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RAM_41830 ee032dad62e22f03fe9b8eb0128c4fb0 427 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 423 2.0E-201 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RAM_41830 ee032dad62e22f03fe9b8eb0128c4fb0 427 ProSitePatterns PS00164 Enolase signature. 334 347 - T 13-10-2018 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RAM_41830 ee032dad62e22f03fe9b8eb0128c4fb0 427 PIRSF PIRSF001400 1 424 9.6E-184 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RAM_10615 72f30be89db620c28d0eca4b945360e8 355 Gene3D G3DSA:3.40.50.80 136 266 4.6E-29 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RAM_10615 72f30be89db620c28d0eca4b945360e8 355 SUPERFAMILY SSF52343 125 253 3.27E-31 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RAM_10615 72f30be89db620c28d0eca4b945360e8 355 Gene3D G3DSA:2.40.30.10 36 132 3.4E-19 T 13-10-2018 RAM_10615 72f30be89db620c28d0eca4b945360e8 355 Pfam PF00970 Oxidoreductase FAD-binding domain 59 134 7.1E-8 T 13-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 RAM_10615 72f30be89db620c28d0eca4b945360e8 355 Gene3D G3DSA:3.10.20.30 267 355 9.9E-12 T 13-10-2018 IPR012675 Beta-grasp domain superfamily RAM_10615 72f30be89db620c28d0eca4b945360e8 355 SUPERFAMILY SSF54292 253 354 6.32E-16 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RAM_10615 72f30be89db620c28d0eca4b945360e8 355 PRINTS PR00410 Phenol hydroxylase reductase family signature 234 242 3.8E-10 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RAM_10615 72f30be89db620c28d0eca4b945360e8 355 PRINTS PR00410 Phenol hydroxylase reductase family signature 145 164 3.8E-10 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RAM_10615 72f30be89db620c28d0eca4b945360e8 355 PRINTS PR00410 Phenol hydroxylase reductase family signature 69 81 3.8E-10 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RAM_10615 72f30be89db620c28d0eca4b945360e8 355 Pfam PF00175 Oxidoreductase NAD-binding domain 146 248 1.1E-15 T 13-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 RAM_10615 72f30be89db620c28d0eca4b945360e8 355 SUPERFAMILY SSF63380 41 136 1.62E-20 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RAM_26105 5bb542672459f88b6977817ebc5afb37 207 Pfam PF02525 Flavodoxin-like fold 8 179 8.7E-30 T 13-10-2018 IPR003680 Flavodoxin-like fold RAM_26105 5bb542672459f88b6977817ebc5afb37 207 Gene3D G3DSA:3.40.50.360 2 206 1.5E-39 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RAM_26105 5bb542672459f88b6977817ebc5afb37 207 SUPERFAMILY SSF52218 8 206 2.71E-38 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RAM_01755 5730ab4f3e5110a46fc4c8e471f09d8c 247 SUPERFAMILY SSF52518 3 244 1.43E-41 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_01755 5730ab4f3e5110a46fc4c8e471f09d8c 247 Pfam PF00676 Dehydrogenase E1 component 29 78 4.2E-5 T 13-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 RAM_01755 5730ab4f3e5110a46fc4c8e471f09d8c 247 Pfam PF00676 Dehydrogenase E1 component 84 186 2.2E-18 T 13-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 RAM_01755 5730ab4f3e5110a46fc4c8e471f09d8c 247 Gene3D G3DSA:3.40.50.970 1 247 5.6E-45 T 13-10-2018 RAM_21880 a1abdf2b0b3622e6aed295faa4ffbf33 70 SMART SM00704 22 66 2.2E-5 T 13-10-2018 IPR018967 Iron sulphur-containing domain, CDGSH-type GO:0043231|GO:0051537 RAM_21880 a1abdf2b0b3622e6aed295faa4ffbf33 70 Pfam PF09360 Iron-binding zinc finger CDGSH type 17 61 1.8E-15 T 13-10-2018 IPR018967 Iron sulphur-containing domain, CDGSH-type GO:0043231|GO:0051537 RAM_21880 a1abdf2b0b3622e6aed295faa4ffbf33 70 Gene3D G3DSA:3.40.5.90 3 70 3.5E-10 T 13-10-2018 RAM_47495 9fc18fbfd695e1cb89363e6a13c8c1a2 303 Gene3D G3DSA:3.40.50.720 2 268 5.9E-37 T 13-10-2018 RAM_47495 9fc18fbfd695e1cb89363e6a13c8c1a2 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 8.9E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_47495 9fc18fbfd695e1cb89363e6a13c8c1a2 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 187 8.9E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_47495 9fc18fbfd695e1cb89363e6a13c8c1a2 303 Pfam PF00106 short chain dehydrogenase 6 204 9.1E-17 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_47495 9fc18fbfd695e1cb89363e6a13c8c1a2 303 SUPERFAMILY SSF51735 1 259 2.88E-35 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_12405 66de8bf64d61935d82f7cf3f97765ccc 368 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 145 160 3.3E-18 T 13-10-2018 RAM_12405 66de8bf64d61935d82f7cf3f97765ccc 368 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 295 311 3.3E-18 T 13-10-2018 RAM_12405 66de8bf64d61935d82f7cf3f97765ccc 368 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 2 24 3.3E-18 T 13-10-2018 RAM_12405 66de8bf64d61935d82f7cf3f97765ccc 368 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 280 295 3.3E-18 T 13-10-2018 RAM_12405 66de8bf64d61935d82f7cf3f97765ccc 368 Pfam PF01494 FAD binding domain 2 341 1.0E-19 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_12405 66de8bf64d61935d82f7cf3f97765ccc 368 SUPERFAMILY SSF51905 2 344 1.68E-51 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_12405 66de8bf64d61935d82f7cf3f97765ccc 368 Gene3D G3DSA:3.50.50.60 2 364 9.3E-70 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_07470 f4a75232494d359a8218c1502fa90b07 550 SUPERFAMILY SSF52172 7 134 1.24E-21 T 13-10-2018 IPR011006 CheY-like superfamily RAM_07470 f4a75232494d359a8218c1502fa90b07 550 Gene3D G3DSA:3.50.50.60 340 463 3.2E-92 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_07470 f4a75232494d359a8218c1502fa90b07 550 Pfam PF00072 Response regulator receiver domain 7 119 1.0E-12 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_07470 f4a75232494d359a8218c1502fa90b07 550 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 457 478 5.0E-35 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAM_07470 f4a75232494d359a8218c1502fa90b07 550 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 367 391 5.0E-35 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAM_07470 f4a75232494d359a8218c1502fa90b07 550 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 421 437 5.0E-35 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAM_07470 f4a75232494d359a8218c1502fa90b07 550 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 228 250 5.0E-35 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAM_07470 f4a75232494d359a8218c1502fa90b07 550 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 261 276 5.0E-35 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAM_07470 f4a75232494d359a8218c1502fa90b07 550 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 329 337 5.0E-35 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAM_07470 f4a75232494d359a8218c1502fa90b07 550 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 282 292 5.0E-35 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAM_07470 f4a75232494d359a8218c1502fa90b07 550 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 500 522 8.2E-21 T 13-10-2018 RAM_07470 f4a75232494d359a8218c1502fa90b07 550 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 455 471 8.2E-21 T 13-10-2018 RAM_07470 f4a75232494d359a8218c1502fa90b07 550 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 229 248 8.2E-21 T 13-10-2018 RAM_07470 f4a75232494d359a8218c1502fa90b07 550 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 371 389 8.2E-21 T 13-10-2018 RAM_07470 f4a75232494d359a8218c1502fa90b07 550 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 328 346 8.2E-21 T 13-10-2018 RAM_07470 f4a75232494d359a8218c1502fa90b07 550 Gene3D G3DSA:3.40.50.2300 2 140 5.9E-22 T 13-10-2018 RAM_07470 f4a75232494d359a8218c1502fa90b07 550 Gene3D G3DSA:3.50.50.60 229 546 3.2E-92 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_07470 f4a75232494d359a8218c1502fa90b07 550 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 227 536 1.9E-29 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAM_07470 f4a75232494d359a8218c1502fa90b07 550 SMART SM00448 4 126 6.6E-11 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_07470 f4a75232494d359a8218c1502fa90b07 550 SUPERFAMILY SSF51905 223 547 2.32E-38 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_08525 eada3437e77d9b6663e8f1822d5faca4 240 Gene3D G3DSA:2.60.120.10 2 109 6.6E-8 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_08525 eada3437e77d9b6663e8f1822d5faca4 240 SUPERFAMILY SSF51182 8 114 1.52E-10 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RAM_33450 e415b32e906016d972b0ed86fdc57e04 168 Pfam PF12802 MarR family 57 113 4.5E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_33450 e415b32e906016d972b0ed86fdc57e04 168 Gene3D G3DSA:1.10.10.10 29 164 4.0E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_33450 e415b32e906016d972b0ed86fdc57e04 168 SUPERFAMILY SSF46785 30 159 3.22E-25 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_33450 e415b32e906016d972b0ed86fdc57e04 168 SMART SM00347 50 150 2.6E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_07115 5ac4eed2ca8bc017a323e2fe538b38e2 366 SUPERFAMILY SSF50129 17 197 5.02E-30 T 13-10-2018 IPR011032 GroES-like superfamily RAM_07115 5ac4eed2ca8bc017a323e2fe538b38e2 366 Pfam PF16912 Glucose dehydrogenase C-terminus 159 362 1.5E-65 T 13-10-2018 IPR031640 Glucose dehydrogenase, C-terminal KEGG: 00030+1.1.1.47 RAM_07115 5ac4eed2ca8bc017a323e2fe538b38e2 366 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 42 152 3.7E-12 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_07115 5ac4eed2ca8bc017a323e2fe538b38e2 366 SUPERFAMILY SSF51735 187 323 1.97E-11 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_07115 5ac4eed2ca8bc017a323e2fe538b38e2 366 Gene3D G3DSA:3.90.180.10 31 360 7.2E-101 T 13-10-2018 RAM_07115 5ac4eed2ca8bc017a323e2fe538b38e2 366 Gene3D G3DSA:3.40.50.720 161 336 7.2E-101 T 13-10-2018 RAM_25835 8935075ba205195e35b2293e83323bd9 381 SUPERFAMILY SSF51604 124 376 4.19E-56 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RAM_25835 8935075ba205195e35b2293e83323bd9 381 Gene3D G3DSA:3.30.390.10 35 372 8.1E-87 T 13-10-2018 IPR029017 Enolase-like, N-terminal RAM_25835 8935075ba205195e35b2293e83323bd9 381 SUPERFAMILY SSF54826 19 136 1.61E-20 T 13-10-2018 RAM_25835 8935075ba205195e35b2293e83323bd9 381 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 22 136 1.4E-18 T 13-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain RAM_25835 8935075ba205195e35b2293e83323bd9 381 Gene3D G3DSA:3.20.20.120 129 362 8.1E-87 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RAM_25835 8935075ba205195e35b2293e83323bd9 381 Pfam PF13378 Enolase C-terminal domain-like 158 370 8.0E-47 T 13-10-2018 IPR029065 Enolase C-terminal domain-like RAM_25835 8935075ba205195e35b2293e83323bd9 381 SMART SM00922 154 250 2.4E-18 T 13-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal RAM_00595 d1856520c701e1460abbc3e1c77eca6a 784 SUPERFAMILY SSF53756 10 394 8.97E-28 T 13-10-2018 RAM_00595 d1856520c701e1460abbc3e1c77eca6a 784 SUPERFAMILY SSF53756 504 768 4.49E-28 T 13-10-2018 RAM_00595 d1856520c701e1460abbc3e1c77eca6a 784 Pfam PF00534 Glycosyl transferases group 1 637 693 1.1E-8 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 RAM_00595 d1856520c701e1460abbc3e1c77eca6a 784 Gene3D G3DSA:3.40.50.2000 554 775 9.7E-30 T 13-10-2018 RAM_00595 d1856520c701e1460abbc3e1c77eca6a 784 Gene3D G3DSA:3.40.50.2000 196 378 4.9E-16 T 13-10-2018 RAM_24610 bf83d0b253192ad5ac8c697ea42f7fee 607 SUPERFAMILY SSF69255 377 454 5.23E-20 T 13-10-2018 RAM_24610 bf83d0b253192ad5ac8c697ea42f7fee 607 SUPERFAMILY SSF69279 9 187 5.1E-17 T 13-10-2018 RAM_24610 bf83d0b253192ad5ac8c697ea42f7fee 607 Gene3D G3DSA:2.40.50.230 374 459 6.8E-18 T 13-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily RAM_24610 bf83d0b253192ad5ac8c697ea42f7fee 607 Pfam PF05954 Phage late control gene D protein (GPD) 60 346 7.3E-9 T 13-10-2018 RAM_46955 b2d45896273f6ffd3f315361d71ab25a 865 Gene3D G3DSA:1.10.1780.10 5 153 3.3E-29 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 RAM_46955 b2d45896273f6ffd3f315361d71ab25a 865 Gene3D G3DSA:3.40.50.300 159 350 8.8E-71 T 13-10-2018 RAM_46955 b2d45896273f6ffd3f315361d71ab25a 865 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 636 654 - T 13-10-2018 IPR028299 ClpA/B, conserved site 2 RAM_46955 b2d45896273f6ffd3f315361d71ab25a 865 SMART SM01086 769 862 1.1E-34 T 13-10-2018 IPR019489 Clp ATPase, C-terminal RAM_46955 b2d45896273f6ffd3f315361d71ab25a 865 SUPERFAMILY SSF52540 158 550 6.09E-95 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_46955 b2d45896273f6ffd3f315361d71ab25a 865 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 297 309 - T 13-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 RAM_46955 b2d45896273f6ffd3f315361d71ab25a 865 Gene3D G3DSA:1.10.8.60 769 862 9.4E-29 T 13-10-2018 RAM_46955 b2d45896273f6ffd3f315361d71ab25a 865 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 769 849 6.7E-27 T 13-10-2018 IPR019489 Clp ATPase, C-terminal RAM_46955 b2d45896273f6ffd3f315361d71ab25a 865 Gene3D G3DSA:3.40.50.300 555 767 2.0E-85 T 13-10-2018 RAM_46955 b2d45896273f6ffd3f315361d71ab25a 865 SMART SM00382 602 752 1.5E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_46955 b2d45896273f6ffd3f315361d71ab25a 865 SMART SM00382 199 346 2.3E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_46955 b2d45896273f6ffd3f315361d71ab25a 865 SUPERFAMILY SSF52540 551 851 5.63E-77 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_46955 b2d45896273f6ffd3f315361d71ab25a 865 Gene3D G3DSA:3.40.50.300 351 549 8.3E-73 T 13-10-2018 RAM_46955 b2d45896273f6ffd3f315361d71ab25a 865 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 95 146 1.0E-13 T 13-10-2018 IPR004176 Clp, N-terminal RAM_46955 b2d45896273f6ffd3f315361d71ab25a 865 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 65 1.5E-8 T 13-10-2018 IPR004176 Clp, N-terminal RAM_46955 b2d45896273f6ffd3f315361d71ab25a 865 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 651 669 4.8E-42 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 RAM_46955 b2d45896273f6ffd3f315361d71ab25a 865 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 680 698 4.8E-42 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 RAM_46955 b2d45896273f6ffd3f315361d71ab25a 865 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 713 727 4.8E-42 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 RAM_46955 b2d45896273f6ffd3f315361d71ab25a 865 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 606 624 4.8E-42 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 RAM_46955 b2d45896273f6ffd3f315361d71ab25a 865 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 7 850 0.0 T 13-10-2018 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0042026 RAM_46955 b2d45896273f6ffd3f315361d71ab25a 865 Pfam PF07724 AAA domain (Cdc48 subfamily) 601 763 2.8E-53 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RAM_46955 b2d45896273f6ffd3f315361d71ab25a 865 SUPERFAMILY SSF81923 7 157 5.98E-33 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 RAM_46955 b2d45896273f6ffd3f315361d71ab25a 865 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 204 337 7.0E-12 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RAM_27820 28cd457009bec4d883c9f3918a6e19e1 79 Pfam PF09851 Short C-terminal domain 50 75 4.4E-9 T 13-10-2018 IPR018649 SHOCT domain RAM_39960 ae6ba8e8765ff112da5a1bc451a23aa2 186 SUPERFAMILY SSF81573 81 139 1.26E-10 T 13-10-2018 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily RAM_39960 ae6ba8e8765ff112da5a1bc451a23aa2 186 TIGRFAM TIGR01144 ATP_synt_b: ATP synthase F0, B subunit 29 175 9.9E-29 T 13-10-2018 IPR005864 ATP synthase, F0 complex, subunit b, bacterial GO:0015078|GO:0015986|GO:0045263 RAM_39960 ae6ba8e8765ff112da5a1bc451a23aa2 186 Hamap MF_01398 ATP synthase subunit b [atpF]. 12 156 13.527 T 13-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 RAM_39960 ae6ba8e8765ff112da5a1bc451a23aa2 186 Pfam PF00430 ATP synthase B/B' CF(0) 26 154 2.8E-27 T 13-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 RAM_20920 cde3cfb4b3d04e995648eeffb2131f11 757 Gene3D G3DSA:1.10.520.10 456 756 6.3E-142 T 13-10-2018 RAM_20920 cde3cfb4b3d04e995648eeffb2131f11 757 SUPERFAMILY SSF48113 453 756 2.06E-106 T 13-10-2018 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 RAM_20920 cde3cfb4b3d04e995648eeffb2131f11 757 ProSitePatterns PS00435 Peroxidases proximal heme-ligand signature. 282 292 - T 13-10-2018 IPR019793 Peroxidases heam-ligand binding site Reactome: R-HSA-2408557 RAM_20920 cde3cfb4b3d04e995648eeffb2131f11 757 Gene3D G3DSA:1.10.520.10 52 452 6.1E-204 T 13-10-2018 RAM_20920 cde3cfb4b3d04e995648eeffb2131f11 757 ProSitePatterns PS00436 Peroxidases active site signature. 119 130 - T 13-10-2018 IPR019794 Peroxidase, active site GO:0004601|GO:0055114 RAM_20920 cde3cfb4b3d04e995648eeffb2131f11 757 SUPERFAMILY SSF48113 52 451 5.16E-143 T 13-10-2018 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 RAM_20920 cde3cfb4b3d04e995648eeffb2131f11 757 Pfam PF00141 Peroxidase 113 419 1.2E-45 T 13-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 RAM_20920 cde3cfb4b3d04e995648eeffb2131f11 757 Pfam PF00141 Peroxidase 428 730 6.8E-36 T 13-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 RAM_20920 cde3cfb4b3d04e995648eeffb2131f11 757 Gene3D G3DSA:1.10.420.20 219 421 6.1E-204 T 13-10-2018 RAM_20920 cde3cfb4b3d04e995648eeffb2131f11 757 PRINTS PR00458 Haem peroxidase superfamily signature 197 209 4.2E-19 T 13-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 RAM_20920 cde3cfb4b3d04e995648eeffb2131f11 757 PRINTS PR00458 Haem peroxidase superfamily signature 342 357 4.2E-19 T 13-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 RAM_20920 cde3cfb4b3d04e995648eeffb2131f11 757 PRINTS PR00458 Haem peroxidase superfamily signature 179 196 4.2E-19 T 13-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 RAM_20920 cde3cfb4b3d04e995648eeffb2131f11 757 PRINTS PR00458 Haem peroxidase superfamily signature 282 297 4.2E-19 T 13-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 RAM_20920 cde3cfb4b3d04e995648eeffb2131f11 757 PRINTS PR00458 Haem peroxidase superfamily signature 119 133 4.2E-19 T 13-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 RAM_20920 cde3cfb4b3d04e995648eeffb2131f11 757 Gene3D G3DSA:1.10.420.10 609 732 6.3E-142 T 13-10-2018 RAM_20920 cde3cfb4b3d04e995648eeffb2131f11 757 Hamap MF_01961 Catalase-peroxidase [katG]. 17 757 40.121 T 13-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 RAM_20920 cde3cfb4b3d04e995648eeffb2131f11 757 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 81 94 6.7E-46 T 13-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 RAM_20920 cde3cfb4b3d04e995648eeffb2131f11 757 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 503 529 6.7E-46 T 13-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 RAM_20920 cde3cfb4b3d04e995648eeffb2131f11 757 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 55 77 6.7E-46 T 13-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 RAM_20920 cde3cfb4b3d04e995648eeffb2131f11 757 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 96 121 6.7E-46 T 13-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 RAM_20920 cde3cfb4b3d04e995648eeffb2131f11 757 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 290 313 6.7E-46 T 13-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 RAM_20920 cde3cfb4b3d04e995648eeffb2131f11 757 TIGRFAM TIGR00198 cat_per_HPI: catalase/peroxidase HPI 51 756 0.0 T 13-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 RAM_04630 a32b7b9e733a5f9d8b9b486300f87e85 259 Pfam PF01048 Phosphorylase superfamily 20 256 3.8E-44 T 13-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 RAM_04630 a32b7b9e733a5f9d8b9b486300f87e85 259 ProSitePatterns PS01240 Purine and other phosphorylases family 2 signature. 74 115 - T 13-10-2018 IPR018099 Purine phosphorylase, family 2, conserved site GO:0016763 RAM_04630 a32b7b9e733a5f9d8b9b486300f87e85 259 TIGRFAM TIGR01697 PNPH-PUNA-XAPA: inosine/guanosine/xanthosine phosphorylase family 20 256 3.8E-81 T 13-10-2018 IPR011268 Purine nucleoside phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-6798695|Reactome: R-HSA-74217|Reactome: R-HSA-74259 RAM_04630 a32b7b9e733a5f9d8b9b486300f87e85 259 PIRSF PIRSF000477 1 259 9.6E-93 T 13-10-2018 IPR011268 Purine nucleoside phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-6798695|Reactome: R-HSA-74217|Reactome: R-HSA-74259 RAM_04630 a32b7b9e733a5f9d8b9b486300f87e85 259 SUPERFAMILY SSF53167 4 256 2.23E-83 T 13-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 RAM_04630 a32b7b9e733a5f9d8b9b486300f87e85 259 Gene3D G3DSA:3.40.50.1580 1 257 6.1E-93 T 13-10-2018 RAM_04630 a32b7b9e733a5f9d8b9b486300f87e85 259 TIGRFAM TIGR01698 PUNP: purine nucleotide phosphorylase 20 256 2.6E-100 T 13-10-2018 IPR011269 Putative purine nucleotide phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 RAM_32015 381be1432ccf45f3f08dac119fba1f90 1011 Gene3D G3DSA:1.10.1200.10 693 761 2.3E-16 T 13-10-2018 IPR036736 ACP-like superfamily RAM_32015 381be1432ccf45f3f08dac119fba1f90 1011 Pfam PF00501 AMP-binding enzyme 190 591 3.3E-88 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_32015 381be1432ccf45f3f08dac119fba1f90 1011 ProSitePatterns PS00455 Putative AMP-binding domain signature. 333 344 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_32015 381be1432ccf45f3f08dac119fba1f90 1011 Gene3D G3DSA:3.40.50.12780 179 583 7.3E-119 T 13-10-2018 RAM_32015 381be1432ccf45f3f08dac119fba1f90 1011 SUPERFAMILY SSF56801 171 712 2.49E-137 T 13-10-2018 RAM_32015 381be1432ccf45f3f08dac119fba1f90 1011 Pfam PF00975 Thioesterase domain 782 1005 2.7E-18 T 13-10-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 RAM_32015 381be1432ccf45f3f08dac119fba1f90 1011 Gene3D G3DSA:3.30.300.30 586 683 1.8E-27 T 13-10-2018 RAM_32015 381be1432ccf45f3f08dac119fba1f90 1011 SUPERFAMILY SSF53474 728 1008 5.62E-38 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_32015 381be1432ccf45f3f08dac119fba1f90 1011 Gene3D G3DSA:3.40.50.1820 773 1010 1.1E-38 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_32015 381be1432ccf45f3f08dac119fba1f90 1011 Pfam PF13193 AMP-binding enzyme C-terminal domain 599 671 2.7E-8 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_32015 381be1432ccf45f3f08dac119fba1f90 1011 Pfam PF00550 Phosphopantetheine attachment site 701 760 7.2E-8 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_32015 381be1432ccf45f3f08dac119fba1f90 1011 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 209 615 2.4E-114 T 13-10-2018 IPR010071 Amino acid adenylation domain RAM_30205 9643d5ea8f8eaa410750bea2fc13590c 126 Gene3D G3DSA:3.30.750.24 14 126 1.8E-24 T 13-10-2018 IPR036513 STAS domain superfamily RAM_30205 9643d5ea8f8eaa410750bea2fc13590c 126 Pfam PF01740 STAS domain 22 123 1.1E-8 T 13-10-2018 IPR002645 STAS domain RAM_30205 9643d5ea8f8eaa410750bea2fc13590c 126 SUPERFAMILY SSF52091 22 125 6.87E-16 T 13-10-2018 IPR036513 STAS domain superfamily RAM_19765 5c29fba7fd329a1638e2751b85b7a448 522 Pfam PF13193 AMP-binding enzyme C-terminal domain 429 505 5.5E-13 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_19765 5c29fba7fd329a1638e2751b85b7a448 522 Gene3D G3DSA:3.30.300.30 417 515 1.4E-21 T 13-10-2018 RAM_19765 5c29fba7fd329a1638e2751b85b7a448 522 Pfam PF00501 AMP-binding enzyme 9 413 2.7E-60 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_19765 5c29fba7fd329a1638e2751b85b7a448 522 SUPERFAMILY SSF56801 4 514 5.36E-104 T 13-10-2018 RAM_19765 5c29fba7fd329a1638e2751b85b7a448 522 Gene3D G3DSA:3.40.50.12780 1 413 8.7E-80 T 13-10-2018 RAM_19765 5c29fba7fd329a1638e2751b85b7a448 522 ProSitePatterns PS00455 Putative AMP-binding domain signature. 166 177 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_36630 5884fd4cd23d4ceeba3f0e5e7876c09e 451 Gene3D G3DSA:3.20.20.30 1 451 2.6E-145 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_36630 5884fd4cd23d4ceeba3f0e5e7876c09e 451 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 4 432 1.9E-160 T 13-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 RAM_36630 5884fd4cd23d4ceeba3f0e5e7876c09e 451 SUPERFAMILY SSF51679 3 438 6.67E-119 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_36630 5884fd4cd23d4ceeba3f0e5e7876c09e 451 PIRSF PIRSF000337 1 447 2.9E-155 T 13-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 RAM_36630 5884fd4cd23d4ceeba3f0e5e7876c09e 451 Pfam PF00296 Luciferase-like monooxygenase 20 389 3.6E-62 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_04180 00f32260aa0074fb065c714b57094cda 1006 Pfam PF14021 Tuberculosis necrotizing toxin 912 996 9.0E-28 T 13-10-2018 IPR025331 Tuberculosis necrotizing toxin KEGG: 00760+3.2.2.5 RAM_04180 00f32260aa0074fb065c714b57094cda 1006 SUPERFAMILY SSF160424 14 145 2.62E-16 T 13-10-2018 IPR036170 Probable antitoxin YezG superfamily RAM_47670 79b39513e92abac784df8ddff234f918 101 ProSitePatterns PS01048 Ribosomal protein S6 signature. 38 47 - T 13-10-2018 IPR020815 Ribosomal protein S6, conserved site GO:0003735|GO:0005840|GO:0006412|GO:0019843 RAM_47670 79b39513e92abac784df8ddff234f918 101 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 88 7.5E-21 T 13-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_47670 79b39513e92abac784df8ddff234f918 101 Pfam PF01250 Ribosomal protein S6 1 86 5.9E-24 T 13-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_47670 79b39513e92abac784df8ddff234f918 101 Gene3D G3DSA:3.30.70.60 1 98 2.1E-25 T 13-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 RAM_47670 79b39513e92abac784df8ddff234f918 101 SUPERFAMILY SSF54995 1 88 4.71E-26 T 13-10-2018 IPR035980 Ribosomal protein S6 superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_47670 79b39513e92abac784df8ddff234f918 101 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 89 15.281 T 13-10-2018 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 RAM_39550 bdc6e53f6d784c74399682f34dbaf82c 295 SUPERFAMILY SSF48239 43 263 1.16E-7 T 13-10-2018 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid RAM_22910 40a21b305ef2e8bd2656a22699dc6b51 483 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 126 456 1.2E-111 T 13-10-2018 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 RAM_22910 40a21b305ef2e8bd2656a22699dc6b51 483 Pfam PF02378 Phosphotransferase system, EIIC 133 410 3.4E-13 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 RAM_22910 40a21b305ef2e8bd2656a22699dc6b51 483 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 4 87 6.6E-30 T 13-10-2018 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 KEGG: 00051+2.7.1.202 RAM_22910 40a21b305ef2e8bd2656a22699dc6b51 483 Gene3D G3DSA:3.40.50.2300 1 103 5.3E-37 T 13-10-2018 RAM_22910 40a21b305ef2e8bd2656a22699dc6b51 483 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 5 94 3.5E-20 T 13-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 RAM_22910 40a21b305ef2e8bd2656a22699dc6b51 483 SUPERFAMILY SSF52794 2 98 2.62E-31 T 13-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 RAM_08495 4a0df4a501ce51992659cd5d03e3796d 99 Gene3D G3DSA:1.10.20.60 2 94 4.1E-24 T 13-10-2018 RAM_08495 4a0df4a501ce51992659cd5d03e3796d 99 Pfam PF02686 Glu-tRNAGln amidotransferase C subunit 20 91 2.1E-17 T 13-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 RAM_08495 4a0df4a501ce51992659cd5d03e3796d 99 TIGRFAM TIGR00135 gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit 4 95 5.4E-25 T 13-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 RAM_08495 4a0df4a501ce51992659cd5d03e3796d 99 Hamap MF_00122 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [gatC]. 3 96 23.961 T 13-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 RAM_08495 4a0df4a501ce51992659cd5d03e3796d 99 SUPERFAMILY SSF141000 4 94 2.62E-28 T 13-10-2018 IPR036113 Glu-tRNAGln amidotransferase superfamily, subunit C GO:0006450 RAM_25685 f2140a8faba769449bc194723d6db25f 273 SUPERFAMILY SSF161098 9 273 2.94E-63 T 13-10-2018 IPR035906 MetI-like superfamily RAM_25685 f2140a8faba769449bc194723d6db25f 273 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 266 1.2E-19 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_25685 f2140a8faba769449bc194723d6db25f 273 Gene3D G3DSA:1.10.3720.10 3 260 1.0E-55 T 13-10-2018 IPR035906 MetI-like superfamily RAM_44985 41ea06150f2db2a8c9898d161345c9c4 280 Pfam PF01844 HNH endonuclease 74 120 1.2E-11 T 13-10-2018 IPR002711 HNH endonuclease GO:0003676|GO:0004519 RAM_44985 41ea06150f2db2a8c9898d161345c9c4 280 SMART SM00507 63 116 2.2E-12 T 13-10-2018 IPR003615 HNH nuclease RAM_44985 41ea06150f2db2a8c9898d161345c9c4 280 Gene3D G3DSA:3.30.40.60 43 140 1.5E-14 T 13-10-2018 RAM_17905 05b62c941f040b72497eb0056576fb84 150 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 3 144 2.4E-16 T 13-10-2018 IPR019587 Polyketide cyclase/dehydrase RAM_17905 05b62c941f040b72497eb0056576fb84 150 SUPERFAMILY SSF55961 3 147 4.71E-27 T 13-10-2018 RAM_17905 05b62c941f040b72497eb0056576fb84 150 Gene3D G3DSA:3.30.530.20 2 146 3.0E-28 T 13-10-2018 IPR023393 START-like domain superfamily RAM_44255 18e14354598f3f7523d54047697fdeff 268 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 83 257 1.9E-9 T 13-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 RAM_44255 18e14354598f3f7523d54047697fdeff 268 Gene3D G3DSA:3.90.850.10 1 259 1.6E-81 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 RAM_44255 18e14354598f3f7523d54047697fdeff 268 SUPERFAMILY SSF56529 4 259 8.24E-77 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 RAM_39255 cbed2b75cc201ac182c99260eb0a5e76 308 Pfam PF01636 Phosphotransferase enzyme family 42 284 1.3E-25 T 13-10-2018 IPR002575 Aminoglycoside phosphotransferase RAM_39255 cbed2b75cc201ac182c99260eb0a5e76 308 SUPERFAMILY SSF56112 28 305 4.59E-46 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_39255 cbed2b75cc201ac182c99260eb0a5e76 308 Gene3D G3DSA:3.90.1200.10 133 308 7.0E-19 T 13-10-2018 RAM_39255 cbed2b75cc201ac182c99260eb0a5e76 308 Gene3D G3DSA:3.30.200.20 23 109 5.9E-5 T 13-10-2018 RAM_17665 be2c4d4781f25da9d0270644d6e2f532 401 Pfam PF00067 Cytochrome P450 218 370 1.8E-17 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_17665 be2c4d4781f25da9d0270644d6e2f532 401 Gene3D G3DSA:1.10.630.10 12 401 1.7E-116 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_17665 be2c4d4781f25da9d0270644d6e2f532 401 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 343 352 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RAM_17665 be2c4d4781f25da9d0270644d6e2f532 401 PRINTS PR00385 P450 superfamily signature 274 285 4.9E-8 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_17665 be2c4d4781f25da9d0270644d6e2f532 401 PRINTS PR00385 P450 superfamily signature 237 254 4.9E-8 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_17665 be2c4d4781f25da9d0270644d6e2f532 401 PRINTS PR00385 P450 superfamily signature 341 350 4.9E-8 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_17665 be2c4d4781f25da9d0270644d6e2f532 401 PRINTS PR00385 P450 superfamily signature 350 361 4.9E-8 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_17665 be2c4d4781f25da9d0270644d6e2f532 401 PRINTS PR00359 B-class P450 signature 292 319 9.0E-56 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_17665 be2c4d4781f25da9d0270644d6e2f532 401 PRINTS PR00359 B-class P450 signature 341 350 9.0E-56 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_17665 be2c4d4781f25da9d0270644d6e2f532 401 PRINTS PR00359 B-class P450 signature 320 335 9.0E-56 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_17665 be2c4d4781f25da9d0270644d6e2f532 401 PRINTS PR00359 B-class P450 signature 155 170 9.0E-56 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_17665 be2c4d4781f25da9d0270644d6e2f532 401 PRINTS PR00359 B-class P450 signature 91 102 9.0E-56 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_17665 be2c4d4781f25da9d0270644d6e2f532 401 PRINTS PR00359 B-class P450 signature 138 154 9.0E-56 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_17665 be2c4d4781f25da9d0270644d6e2f532 401 PRINTS PR00359 B-class P450 signature 274 285 9.0E-56 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_17665 be2c4d4781f25da9d0270644d6e2f532 401 PRINTS PR00359 B-class P450 signature 192 214 9.0E-56 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_17665 be2c4d4781f25da9d0270644d6e2f532 401 PRINTS PR00359 B-class P450 signature 350 361 9.0E-56 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_17665 be2c4d4781f25da9d0270644d6e2f532 401 SUPERFAMILY SSF48264 17 401 7.86E-89 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_15285 774fa394f441fdfe2f14ef9f87e749ba 247 Gene3D G3DSA:3.40.50.720 3 247 1.8E-70 T 13-10-2018 RAM_15285 774fa394f441fdfe2f14ef9f87e749ba 247 SUPERFAMILY SSF51735 7 246 1.72E-69 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_15285 774fa394f441fdfe2f14ef9f87e749ba 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 1.5E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15285 774fa394f441fdfe2f14ef9f87e749ba 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 1.5E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15285 774fa394f441fdfe2f14ef9f87e749ba 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 1.5E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15285 774fa394f441fdfe2f14ef9f87e749ba 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 1.5E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15285 774fa394f441fdfe2f14ef9f87e749ba 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.5E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15285 774fa394f441fdfe2f14ef9f87e749ba 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 1.5E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15285 774fa394f441fdfe2f14ef9f87e749ba 247 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 246 8.2E-56 T 13-10-2018 RAM_15285 774fa394f441fdfe2f14ef9f87e749ba 247 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 189 2.0E-4 T 13-10-2018 RAM_15285 774fa394f441fdfe2f14ef9f87e749ba 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 5.1E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15285 774fa394f441fdfe2f14ef9f87e749ba 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 5.1E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15285 774fa394f441fdfe2f14ef9f87e749ba 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 5.1E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_41740 2b3e0a3c6c3a0acd8da09a96fd7de664 192 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 132 146 5.9E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_41740 2b3e0a3c6c3a0acd8da09a96fd7de664 192 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 162 174 5.9E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_41740 2b3e0a3c6c3a0acd8da09a96fd7de664 192 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 146 162 5.9E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_41740 2b3e0a3c6c3a0acd8da09a96fd7de664 192 ProSitePatterns PS00622 LuxR-type HTH domain signature. 146 173 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_41740 2b3e0a3c6c3a0acd8da09a96fd7de664 192 SMART SM00421 129 186 5.8E-20 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_41740 2b3e0a3c6c3a0acd8da09a96fd7de664 192 Pfam PF00196 Bacterial regulatory proteins, luxR family 131 186 1.5E-15 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_41740 2b3e0a3c6c3a0acd8da09a96fd7de664 192 Gene3D G3DSA:1.10.10.10 128 192 2.7E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_41740 2b3e0a3c6c3a0acd8da09a96fd7de664 192 SUPERFAMILY SSF46894 128 192 1.67E-18 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_27935 f769c092bad6ac021653f9bea056e263 303 PRINTS PR01438 Universal stress protein signature 273 295 1.5E-15 T 13-10-2018 IPR006015 Universal stress protein A RAM_27935 f769c092bad6ac021653f9bea056e263 303 PRINTS PR01438 Universal stress protein signature 156 174 1.5E-15 T 13-10-2018 IPR006015 Universal stress protein A RAM_27935 f769c092bad6ac021653f9bea056e263 303 PRINTS PR01438 Universal stress protein signature 255 267 1.5E-15 T 13-10-2018 IPR006015 Universal stress protein A RAM_27935 f769c092bad6ac021653f9bea056e263 303 SUPERFAMILY SSF52402 158 297 5.36E-30 T 13-10-2018 RAM_27935 f769c092bad6ac021653f9bea056e263 303 SUPERFAMILY SSF52402 9 148 9.21E-27 T 13-10-2018 RAM_27935 f769c092bad6ac021653f9bea056e263 303 Gene3D G3DSA:3.40.50.620 151 301 1.7E-47 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAM_27935 f769c092bad6ac021653f9bea056e263 303 Gene3D G3DSA:3.40.50.620 2 150 3.7E-36 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAM_27935 f769c092bad6ac021653f9bea056e263 303 Pfam PF00582 Universal stress protein family 9 145 1.5E-21 T 13-10-2018 IPR006016 UspA RAM_27935 f769c092bad6ac021653f9bea056e263 303 Pfam PF00582 Universal stress protein family 159 295 2.8E-25 T 13-10-2018 IPR006016 UspA RAM_37350 7616ace7335e44a553ab97a36958ce83 311 TIGRFAM TIGR01380 glut_syn: glutathione synthase 1 302 6.8E-96 T 13-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 RAM_37350 7616ace7335e44a553ab97a36958ce83 311 Gene3D G3DSA:3.30.470.20 114 292 3.0E-94 T 13-10-2018 RAM_37350 7616ace7335e44a553ab97a36958ce83 311 SUPERFAMILY SSF52440 2 120 3.74E-31 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RAM_37350 7616ace7335e44a553ab97a36958ce83 311 Hamap MF_00162 Glutathione synthetase [gshB]. 1 311 104.576 T 13-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 RAM_37350 7616ace7335e44a553ab97a36958ce83 311 Pfam PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain 123 292 2.7E-54 T 13-10-2018 IPR004218 Prokaryotic glutathione synthetase, ATP-binding GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 RAM_37350 7616ace7335e44a553ab97a36958ce83 311 SUPERFAMILY SSF56059 122 296 2.16E-43 T 13-10-2018 RAM_37350 7616ace7335e44a553ab97a36958ce83 311 Gene3D G3DSA:3.30.1490.20 136 200 3.0E-94 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 RAM_37350 7616ace7335e44a553ab97a36958ce83 311 Gene3D G3DSA:3.40.50.20 6 113 3.0E-94 T 13-10-2018 RAM_37350 7616ace7335e44a553ab97a36958ce83 311 Pfam PF02951 Prokaryotic glutathione synthetase, N-terminal domain 2 119 7.8E-32 T 13-10-2018 IPR004215 Prokaryotic glutathione synthetase, N-terminal GO:0004363|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 RAM_24750 879ebc7db176a65f90eecc9185e4f544 395 Gene3D G3DSA:3.30.9.50 36 269 1.4E-66 T 13-10-2018 RAM_24750 879ebc7db176a65f90eecc9185e4f544 395 Pfam PF01494 FAD binding domain 1 338 1.1E-19 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_24750 879ebc7db176a65f90eecc9185e4f544 395 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 294 310 9.9E-8 T 13-10-2018 RAM_24750 879ebc7db176a65f90eecc9185e4f544 395 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 144 159 9.9E-8 T 13-10-2018 RAM_24750 879ebc7db176a65f90eecc9185e4f544 395 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 279 294 9.9E-8 T 13-10-2018 RAM_24750 879ebc7db176a65f90eecc9185e4f544 395 Gene3D G3DSA:3.50.50.60 3 340 1.4E-66 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_24750 879ebc7db176a65f90eecc9185e4f544 395 SUPERFAMILY SSF51905 1 348 1.9E-49 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_30990 9321035963270bbb8387bcdfa19769c0 342 Gene3D G3DSA:3.40.50.720 5 328 1.1E-114 T 13-10-2018 RAM_30990 9321035963270bbb8387bcdfa19769c0 342 SUPERFAMILY SSF51735 3 171 3.06E-45 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_30990 9321035963270bbb8387bcdfa19769c0 342 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 155 313 1.1E-22 T 13-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 RAM_30990 9321035963270bbb8387bcdfa19769c0 342 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 4 129 1.1E-24 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 RAM_30990 9321035963270bbb8387bcdfa19769c0 342 ProSitePatterns PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site. 141 157 - T 13-10-2018 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site GO:0003942|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 RAM_30990 9321035963270bbb8387bcdfa19769c0 342 Hamap MF_00150 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 3 336 38.193 T 13-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 RAM_30990 9321035963270bbb8387bcdfa19769c0 342 SUPERFAMILY SSF55347 146 310 1.96E-46 T 13-10-2018 RAM_30990 9321035963270bbb8387bcdfa19769c0 342 SMART SM00859 4 136 6.2E-45 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 RAM_30990 9321035963270bbb8387bcdfa19769c0 342 TIGRFAM TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase 4 342 1.1E-112 T 13-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 RAM_30990 9321035963270bbb8387bcdfa19769c0 342 Gene3D G3DSA:3.30.360.10 150 315 1.1E-114 T 13-10-2018 RAM_28210 483dd0dab7b1c57090c3cf2f58aabb7b 473 SUPERFAMILY SSF103473 3 460 2.88E-57 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_28210 483dd0dab7b1c57090c3cf2f58aabb7b 473 Gene3D G3DSA:1.20.1720.10 17 230 9.3E-43 T 13-10-2018 RAM_28210 483dd0dab7b1c57090c3cf2f58aabb7b 473 ProSitePatterns PS00216 Sugar transport proteins signature 1. 71 88 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RAM_28210 483dd0dab7b1c57090c3cf2f58aabb7b 473 Gene3D G3DSA:1.20.1250.20 261 464 3.5E-11 T 13-10-2018 RAM_28210 483dd0dab7b1c57090c3cf2f58aabb7b 473 Pfam PF07690 Major Facilitator Superfamily 22 415 5.2E-42 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_05170 dcd753ec4282c2dd6fd7a4561c1d2bf9 362 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 308 339 5.2E-4 T 13-10-2018 IPR001451 Hexapeptide repeat RAM_05170 dcd753ec4282c2dd6fd7a4561c1d2bf9 362 SUPERFAMILY SSF53448 12 330 3.52E-68 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_05170 dcd753ec4282c2dd6fd7a4561c1d2bf9 362 Gene3D G3DSA:3.90.550.10 1 251 1.5E-63 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_05170 dcd753ec4282c2dd6fd7a4561c1d2bf9 362 Gene3D G3DSA:2.160.10.10 256 357 2.3E-15 T 13-10-2018 RAM_05170 dcd753ec4282c2dd6fd7a4561c1d2bf9 362 Pfam PF00483 Nucleotidyl transferase 12 238 6.6E-45 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 RAM_15565 44a726fb21e2e9da097c129ee24d8eb2 727 SUPERFAMILY SSF81296 5 147 9.24E-42 T 13-10-2018 IPR014756 Immunoglobulin E-set RAM_15565 44a726fb21e2e9da097c129ee24d8eb2 727 SMART SM00642 138 571 2.9E-8 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RAM_15565 44a726fb21e2e9da097c129ee24d8eb2 727 SUPERFAMILY SSF51011 593 719 7.91E-21 T 13-10-2018 RAM_15565 44a726fb21e2e9da097c129ee24d8eb2 727 SUPERFAMILY SSF51445 133 579 2.46E-133 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_15565 44a726fb21e2e9da097c129ee24d8eb2 727 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 6 679 0.0 T 13-10-2018 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 RAM_15565 44a726fb21e2e9da097c129ee24d8eb2 727 Gene3D G3DSA:2.60.40.10 1 136 1.2E-41 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_15565 44a726fb21e2e9da097c129ee24d8eb2 727 Pfam PF00128 Alpha amylase, catalytic domain 296 534 6.7E-7 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RAM_15565 44a726fb21e2e9da097c129ee24d8eb2 727 Pfam PF00128 Alpha amylase, catalytic domain 188 280 1.4E-8 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RAM_15565 44a726fb21e2e9da097c129ee24d8eb2 727 Gene3D G3DSA:3.20.20.80 138 585 2.1E-184 T 13-10-2018 RAM_15565 44a726fb21e2e9da097c129ee24d8eb2 727 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 10 96 3.2E-15 T 13-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 RAM_15565 44a726fb21e2e9da097c129ee24d8eb2 727 Gene3D G3DSA:2.60.40.1180 592 721 1.8E-14 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta RAM_05505 7b23e2e3ec7043a5926b14fec949a652 393 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_05505 7b23e2e3ec7043a5926b14fec949a652 393 SMART SM00382 29 220 2.2E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_05505 7b23e2e3ec7043a5926b14fec949a652 393 Pfam PF00005 ABC transporter 21 162 4.3E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_05505 7b23e2e3ec7043a5926b14fec949a652 393 SUPERFAMILY SSF52540 4 244 1.46E-82 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_05505 7b23e2e3ec7043a5926b14fec949a652 393 SUPERFAMILY SSF50331 237 389 2.72E-19 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal RAM_05505 7b23e2e3ec7043a5926b14fec949a652 393 Gene3D G3DSA:3.40.50.300 4 222 3.4E-63 T 13-10-2018 RAM_05505 7b23e2e3ec7043a5926b14fec949a652 393 Gene3D G3DSA:2.40.50.940 223 382 4.7E-27 T 13-10-2018 RAM_05505 7b23e2e3ec7043a5926b14fec949a652 393 Gene3D G3DSA:2.40.50.140 287 373 4.7E-27 T 13-10-2018 RAM_26600 1184a2ec1d3326fd76a9efb389e98073 122 Pfam PF01740 STAS domain 19 108 3.6E-5 T 13-10-2018 IPR002645 STAS domain RAM_26600 1184a2ec1d3326fd76a9efb389e98073 122 Gene3D G3DSA:3.30.750.24 11 115 3.0E-19 T 13-10-2018 IPR036513 STAS domain superfamily RAM_26600 1184a2ec1d3326fd76a9efb389e98073 122 SUPERFAMILY SSF52091 20 112 3.53E-11 T 13-10-2018 IPR036513 STAS domain superfamily RAM_41405 35550411a6674962f99e26a77abe0959 73 SUPERFAMILY SSF116842 6 67 4.45E-17 T 13-10-2018 RAM_41405 35550411a6674962f99e26a77abe0959 73 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 6 49 2.0E-12 T 13-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RAM_41405 35550411a6674962f99e26a77abe0959 73 Pfam PF02609 Exonuclease VII small subunit 11 61 1.2E-17 T 13-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RAM_41405 35550411a6674962f99e26a77abe0959 73 Gene3D G3DSA:1.10.287.1040 4 73 1.0E-14 T 13-10-2018 IPR037004 Exonuclease VII, small subunit superfamily GO:0006308|GO:0008855|GO:0009318 RAM_41405 35550411a6674962f99e26a77abe0959 73 PIRSF PIRSF006488 1 73 9.0E-23 T 13-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RAM_41405 35550411a6674962f99e26a77abe0959 73 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 10 70 13.858 T 13-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RAM_41405 35550411a6674962f99e26a77abe0959 73 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 11 64 9.4E-21 T 13-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RAM_13700 07c6b0b1d4f96fbacd5f483eb2c11d8b 435 Pfam PF00120 Glutamine synthetase, catalytic domain 132 375 5.0E-50 T 13-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RAM_13700 07c6b0b1d4f96fbacd5f483eb2c11d8b 435 SUPERFAMILY SSF55931 131 429 4.12E-59 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 RAM_13700 07c6b0b1d4f96fbacd5f483eb2c11d8b 435 SMART SM01230 131 362 1.6E-58 T 13-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RAM_13700 07c6b0b1d4f96fbacd5f483eb2c11d8b 435 Gene3D G3DSA:3.30.590.10 129 432 1.7E-66 T 13-10-2018 RAM_37215 6921521fc8dbe84a957b5542eb6ba972 513 Pfam PF13556 PucR C-terminal helix-turn-helix domain 452 508 2.8E-18 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain RAM_37215 6921521fc8dbe84a957b5542eb6ba972 513 Gene3D G3DSA:1.10.10.2840 380 512 2.5E-17 T 13-10-2018 RAM_02695 1675f7d242b7f297f7da9c55e8a0fac4 823 Gene3D G3DSA:3.30.70.20 159 241 1.7E-6 T 13-10-2018 RAM_02695 1675f7d242b7f297f7da9c55e8a0fac4 823 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 20 97 1.1E-14 T 13-10-2018 RAM_02695 1675f7d242b7f297f7da9c55e8a0fac4 823 TIGRFAM TIGR01973 NuoG: NADH dehydrogenase (quinone), G subunit 23 674 5.6E-160 T 13-10-2018 IPR010228 NADH:ubiquinone oxidoreductase, subunit G GO:0016651|GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_02695 1675f7d242b7f297f7da9c55e8a0fac4 823 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 49 66 - T 13-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_02695 1675f7d242b7f297f7da9c55e8a0fac4 823 SUPERFAMILY SSF50692 727 804 6.53E-5 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily RAM_02695 1675f7d242b7f297f7da9c55e8a0fac4 823 SUPERFAMILY SSF54862 100 248 9.21E-31 T 13-10-2018 RAM_02695 1675f7d242b7f297f7da9c55e8a0fac4 823 Gene3D G3DSA:3.40.228.10 386 482 5.4E-17 T 13-10-2018 RAM_02695 1675f7d242b7f297f7da9c55e8a0fac4 823 ProSitePatterns PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 122 134 - T 13-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_02695 1675f7d242b7f297f7da9c55e8a0fac4 823 Gene3D G3DSA:3.40.50.740 316 385 5.4E-17 T 13-10-2018 RAM_02695 1675f7d242b7f297f7da9c55e8a0fac4 823 SMART SM00929 107 147 6.7E-19 T 13-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_02695 1675f7d242b7f297f7da9c55e8a0fac4 823 SMART SM00926 253 307 5.5E-4 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_02695 1675f7d242b7f297f7da9c55e8a0fac4 823 ProSitePatterns PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 170 180 - T 13-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_02695 1675f7d242b7f297f7da9c55e8a0fac4 823 Gene3D G3DSA:2.20.25.90 254 306 1.7E-9 T 13-10-2018 RAM_02695 1675f7d242b7f297f7da9c55e8a0fac4 823 Pfam PF00384 Molybdopterin oxidoreductase 310 460 6.2E-13 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_02695 1675f7d242b7f297f7da9c55e8a0fac4 823 Pfam PF00384 Molybdopterin oxidoreductase 606 656 4.0E-5 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_02695 1675f7d242b7f297f7da9c55e8a0fac4 823 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 108 146 9.1E-16 T 13-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_02695 1675f7d242b7f297f7da9c55e8a0fac4 823 SUPERFAMILY SSF53706 244 749 1.57E-72 T 13-10-2018 RAM_02695 1675f7d242b7f297f7da9c55e8a0fac4 823 Gene3D G3DSA:3.40.50.740 529 710 1.6E-25 T 13-10-2018 RAM_02695 1675f7d242b7f297f7da9c55e8a0fac4 823 Gene3D G3DSA:3.10.20.740 19 147 3.6E-31 T 13-10-2018 RAM_02695 1675f7d242b7f297f7da9c55e8a0fac4 823 SUPERFAMILY SSF54292 20 96 1.26E-16 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RAM_17375 7a778d9ebaae11742c3dc01ef6e54834 496 Gene3D G3DSA:1.20.1250.20 272 495 2.3E-19 T 13-10-2018 RAM_17375 7a778d9ebaae11742c3dc01ef6e54834 496 Gene3D G3DSA:1.20.1720.10 21 233 8.6E-44 T 13-10-2018 RAM_17375 7a778d9ebaae11742c3dc01ef6e54834 496 Pfam PF07690 Major Facilitator Superfamily 27 415 2.2E-49 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_17375 7a778d9ebaae11742c3dc01ef6e54834 496 SUPERFAMILY SSF103473 6 492 9.94E-67 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_17375 7a778d9ebaae11742c3dc01ef6e54834 496 ProSitePatterns PS00216 Sugar transport proteins signature 1. 74 91 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RAM_24050 e4f744897dad064ee23f39f1168ec842 202 Gene3D G3DSA:1.10.530.10 4 92 6.9E-28 T 13-10-2018 RAM_24050 e4f744897dad064ee23f39f1168ec842 202 SUPERFAMILY SSF47090 127 194 1.23E-9 T 13-10-2018 IPR036365 PGBD-like superfamily RAM_24050 e4f744897dad064ee23f39f1168ec842 202 Gene3D G3DSA:1.10.101.10 126 199 3.5E-10 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 RAM_24050 e4f744897dad064ee23f39f1168ec842 202 SUPERFAMILY SSF53955 16 89 1.78E-25 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily RAM_24050 e4f744897dad064ee23f39f1168ec842 202 Pfam PF01471 Putative peptidoglycan binding domain 144 194 1.5E-7 T 13-10-2018 IPR002477 Peptidoglycan binding-like RAM_24050 e4f744897dad064ee23f39f1168ec842 202 Pfam PF06737 Transglycosylase-like domain 17 86 6.2E-21 T 13-10-2018 IPR010618 Transglycosylase-like RAM_44420 730e2f45482166adba669def4e79a21f 541 SUPERFAMILY SSF52743 219 510 1.96E-34 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RAM_44420 730e2f45482166adba669def4e79a21f 541 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 224 234 - T 13-10-2018 IPR023827 Peptidase S8, subtilisin, Asp-active site RAM_44420 730e2f45482166adba669def4e79a21f 541 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 500 510 - T 13-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site RAM_44420 730e2f45482166adba669def4e79a21f 541 Gene3D G3DSA:3.40.50.200 201 526 2.1E-37 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RAM_44420 730e2f45482166adba669def4e79a21f 541 Pfam PF00082 Subtilase family 221 514 7.0E-16 T 13-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RAM_02490 9f18a2c09c88ef1c308bdd3060a52374 308 SMART SM01004 1 307 4.7E-193 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 RAM_02490 9f18a2c09c88ef1c308bdd3060a52374 308 SUPERFAMILY SSF51569 1 308 2.44E-123 T 13-10-2018 RAM_02490 9f18a2c09c88ef1c308bdd3060a52374 308 Gene3D G3DSA:3.20.20.70 1 308 1.6E-125 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_02490 9f18a2c09c88ef1c308bdd3060a52374 308 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 226 238 - T 13-10-2018 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 RAM_02490 9f18a2c09c88ef1c308bdd3060a52374 308 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 281 300 2.0E-57 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 RAM_02490 9f18a2c09c88ef1c308bdd3060a52374 308 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 175 194 2.0E-57 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 RAM_02490 9f18a2c09c88ef1c308bdd3060a52374 308 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 251 266 2.0E-57 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 RAM_02490 9f18a2c09c88ef1c308bdd3060a52374 308 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 226 242 2.0E-57 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 RAM_02490 9f18a2c09c88ef1c308bdd3060a52374 308 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 137 156 2.0E-57 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 RAM_02490 9f18a2c09c88ef1c308bdd3060a52374 308 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 106 120 2.0E-57 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 RAM_02490 9f18a2c09c88ef1c308bdd3060a52374 308 Pfam PF00490 Delta-aminolevulinic acid dehydratase 1 306 4.0E-130 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 RAM_02490 9f18a2c09c88ef1c308bdd3060a52374 308 PIRSF PIRSF001415 1 308 9.9E-135 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 RAM_12875 7d75969b3a7a7483cae44420545b9849 146 Pfam PF12833 Helix-turn-helix domain 36 114 1.8E-23 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_12875 7d75969b3a7a7483cae44420545b9849 146 SUPERFAMILY SSF46689 15 64 3.94E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_12875 7d75969b3a7a7483cae44420545b9849 146 SUPERFAMILY SSF46689 66 117 1.43E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_12875 7d75969b3a7a7483cae44420545b9849 146 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 67 109 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RAM_12875 7d75969b3a7a7483cae44420545b9849 146 SMART SM00342 30 113 8.5E-32 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_12875 7d75969b3a7a7483cae44420545b9849 146 Gene3D G3DSA:1.10.10.60 11 120 4.0E-29 T 13-10-2018 RAM_26355 5f8710ebd2db6022b61aca6493b1962b 861 Pfam PF13191 AAA ATPase domain 8 137 3.3E-10 T 13-10-2018 RAM_26355 5f8710ebd2db6022b61aca6493b1962b 861 SUPERFAMILY SSF46894 785 847 6.12E-14 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_26355 5f8710ebd2db6022b61aca6493b1962b 861 Gene3D G3DSA:1.10.10.10 789 861 1.5E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_26355 5f8710ebd2db6022b61aca6493b1962b 861 Pfam PF00196 Bacterial regulatory proteins, luxR family 794 847 2.6E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_26355 5f8710ebd2db6022b61aca6493b1962b 861 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 794 808 1.2E-6 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_26355 5f8710ebd2db6022b61aca6493b1962b 861 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 808 824 1.2E-6 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_26355 5f8710ebd2db6022b61aca6493b1962b 861 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 824 836 1.2E-6 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_26355 5f8710ebd2db6022b61aca6493b1962b 861 Gene3D G3DSA:3.40.50.300 5 144 1.6E-7 T 13-10-2018 RAM_26355 5f8710ebd2db6022b61aca6493b1962b 861 SMART SM00421 791 848 1.8E-16 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_26355 5f8710ebd2db6022b61aca6493b1962b 861 SUPERFAMILY SSF52540 8 211 1.84E-12 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_05935 6a2b123768aa45a6e363be4b09c2b689 153 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 120 135 2.0E-21 T 13-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 RAM_05935 6a2b123768aa45a6e363be4b09c2b689 153 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 4 21 2.0E-21 T 13-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 RAM_05935 6a2b123768aa45a6e363be4b09c2b689 153 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 79 94 2.0E-21 T 13-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 RAM_05935 6a2b123768aa45a6e363be4b09c2b689 153 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 47 63 2.0E-21 T 13-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 RAM_05935 6a2b123768aa45a6e363be4b09c2b689 153 SUPERFAMILY SSF52788 2 149 3.79E-44 T 13-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily RAM_05935 6a2b123768aa45a6e363be4b09c2b689 153 SMART SM00226 2 148 1.0E-52 T 13-10-2018 IPR023485 Phosphotyrosine protein phosphatase I RAM_05935 6a2b123768aa45a6e363be4b09c2b689 153 Gene3D G3DSA:3.40.50.2300 1 153 7.0E-54 T 13-10-2018 RAM_05935 6a2b123768aa45a6e363be4b09c2b689 153 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 4 146 1.9E-39 T 13-10-2018 IPR023485 Phosphotyrosine protein phosphatase I RAM_28415 b3726c3c9e6b0d896723bde632d2369f 300 Gene3D G3DSA:3.40.109.10 175 281 1.3E-20 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RAM_28415 b3726c3c9e6b0d896723bde632d2369f 300 Gene3D G3DSA:3.40.109.10 109 174 1.6E-6 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RAM_28415 b3726c3c9e6b0d896723bde632d2369f 300 SUPERFAMILY SSF55469 115 280 1.06E-7 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RAM_28415 b3726c3c9e6b0d896723bde632d2369f 300 Gene3D G3DSA:3.40.109.10 9 105 1.1E-21 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RAM_26300 71ff5866b2e884c93b1d89f11bdd714e 473 Gene3D G3DSA:3.30.450.20 133 273 6.2E-30 T 13-10-2018 RAM_26300 71ff5866b2e884c93b1d89f11bdd714e 473 Pfam PF13426 PAS domain 16 119 7.2E-14 T 13-10-2018 IPR000014 PAS domain RAM_26300 71ff5866b2e884c93b1d89f11bdd714e 473 Pfam PF13426 PAS domain 144 247 9.7E-14 T 13-10-2018 IPR000014 PAS domain RAM_26300 71ff5866b2e884c93b1d89f11bdd714e 473 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 377 464 1.3E-5 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_26300 71ff5866b2e884c93b1d89f11bdd714e 473 Gene3D G3DSA:3.30.450.20 3 132 4.7E-30 T 13-10-2018 RAM_26300 71ff5866b2e884c93b1d89f11bdd714e 473 SMART SM00387 373 466 2.0E-6 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_26300 71ff5866b2e884c93b1d89f11bdd714e 473 SUPERFAMILY SSF55785 116 242 4.35E-29 T 13-10-2018 IPR035965 PAS domain superfamily RAM_26300 71ff5866b2e884c93b1d89f11bdd714e 473 SUPERFAMILY SSF55874 337 464 1.92E-17 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_26300 71ff5866b2e884c93b1d89f11bdd714e 473 SMART SM00086 206 248 4.2E-4 T 13-10-2018 IPR001610 PAC motif RAM_26300 71ff5866b2e884c93b1d89f11bdd714e 473 SMART SM00086 78 120 0.0015 T 13-10-2018 IPR001610 PAC motif RAM_26300 71ff5866b2e884c93b1d89f11bdd714e 473 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 4 127 1.9E-18 T 13-10-2018 IPR000014 PAS domain RAM_26300 71ff5866b2e884c93b1d89f11bdd714e 473 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 128 255 7.8E-24 T 13-10-2018 IPR000014 PAS domain RAM_26300 71ff5866b2e884c93b1d89f11bdd714e 473 SMART SM00091 132 199 3.8E-5 T 13-10-2018 IPR000014 PAS domain RAM_26300 71ff5866b2e884c93b1d89f11bdd714e 473 SMART SM00091 4 71 4.8E-5 T 13-10-2018 IPR000014 PAS domain RAM_26300 71ff5866b2e884c93b1d89f11bdd714e 473 Gene3D G3DSA:3.30.565.10 339 464 1.2E-25 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_26300 71ff5866b2e884c93b1d89f11bdd714e 473 SUPERFAMILY SSF55785 17 129 1.24E-25 T 13-10-2018 IPR035965 PAS domain superfamily RAM_26300 71ff5866b2e884c93b1d89f11bdd714e 473 Pfam PF07730 Histidine kinase 272 336 9.4E-11 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_45645 873b86a9cf0a6abe39052e71c18d5669 398 Gene3D G3DSA:1.10.10.10 108 166 1.8E-9 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_45645 873b86a9cf0a6abe39052e71c18d5669 398 SUPERFAMILY SSF88659 98 155 6.11E-11 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_45645 873b86a9cf0a6abe39052e71c18d5669 398 SUPERFAMILY SSF88946 4 70 7.85E-10 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_45645 873b86a9cf0a6abe39052e71c18d5669 398 Pfam PF04542 Sigma-70 region 2 7 73 8.6E-7 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_45645 873b86a9cf0a6abe39052e71c18d5669 398 Pfam PF08281 Sigma-70, region 4 103 154 1.5E-11 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_38965 ee4bc674de92bacebe715e7bbdc9b650 575 SUPERFAMILY SSF56112 11 318 1.86E-67 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_38965 ee4bc674de92bacebe715e7bbdc9b650 575 Pfam PF00069 Protein kinase domain 14 226 2.0E-46 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_38965 ee4bc674de92bacebe715e7bbdc9b650 575 Gene3D G3DSA:1.10.510.10 3 261 5.0E-61 T 13-10-2018 RAM_38965 ee4bc674de92bacebe715e7bbdc9b650 575 SMART SM00220 14 276 2.1E-53 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_38965 ee4bc674de92bacebe715e7bbdc9b650 575 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 132 144 - T 13-10-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 RAM_38965 ee4bc674de92bacebe715e7bbdc9b650 575 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 20 43 - T 13-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 RAM_20705 2e712c346df5d6af0c22da674c988aa8 364 SUPERFAMILY SSF47203 216 361 2.26E-33 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_20705 2e712c346df5d6af0c22da674c988aa8 364 Gene3D G3DSA:1.10.540.10 3 104 3.4E-21 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_20705 2e712c346df5d6af0c22da674c988aa8 364 SUPERFAMILY SSF56645 6 209 2.88E-50 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_20705 2e712c346df5d6af0c22da674c988aa8 364 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 215 357 1.8E-32 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_20705 2e712c346df5d6af0c22da674c988aa8 364 Gene3D G3DSA:2.40.110.10 107 214 5.2E-24 T 13-10-2018 RAM_20705 2e712c346df5d6af0c22da674c988aa8 364 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 107 197 7.5E-19 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RAM_20705 2e712c346df5d6af0c22da674c988aa8 364 Gene3D G3DSA:1.20.140.10 215 361 2.0E-32 T 13-10-2018 RAM_20705 2e712c346df5d6af0c22da674c988aa8 364 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 8 103 4.4E-17 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_17320 6b28e0ae839b9630779712e9facc09c8 635 Pfam PF16499 Alpha galactosidase A 37 319 4.9E-47 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_17320 6b28e0ae839b9630779712e9facc09c8 635 PRINTS PR00740 Glycosyl hydrolase family 27 signature 108 129 1.0E-23 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_17320 6b28e0ae839b9630779712e9facc09c8 635 PRINTS PR00740 Glycosyl hydrolase family 27 signature 275 296 1.0E-23 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_17320 6b28e0ae839b9630779712e9facc09c8 635 PRINTS PR00740 Glycosyl hydrolase family 27 signature 67 82 1.0E-23 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_17320 6b28e0ae839b9630779712e9facc09c8 635 PRINTS PR00740 Glycosyl hydrolase family 27 signature 31 50 1.0E-23 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_17320 6b28e0ae839b9630779712e9facc09c8 635 PRINTS PR00740 Glycosyl hydrolase family 27 signature 254 273 1.0E-23 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_17320 6b28e0ae839b9630779712e9facc09c8 635 Gene3D G3DSA:2.80.10.50 510 633 4.7E-37 T 13-10-2018 RAM_17320 6b28e0ae839b9630779712e9facc09c8 635 SUPERFAMILY SSF51445 35 320 4.48E-71 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_17320 6b28e0ae839b9630779712e9facc09c8 635 SUPERFAMILY SSF51011 314 409 4.89E-11 T 13-10-2018 RAM_17320 6b28e0ae839b9630779712e9facc09c8 635 Gene3D G3DSA:2.60.40.1180 321 411 9.9E-21 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta RAM_17320 6b28e0ae839b9630779712e9facc09c8 635 SUPERFAMILY SSF50370 503 633 2.65E-37 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_17320 6b28e0ae839b9630779712e9facc09c8 635 Pfam PF00652 Ricin-type beta-trefoil lectin domain 511 632 6.7E-25 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_17320 6b28e0ae839b9630779712e9facc09c8 635 Gene3D G3DSA:2.60.120.260 414 508 6.4E-13 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_17320 6b28e0ae839b9630779712e9facc09c8 635 Gene3D G3DSA:3.20.20.70 26 320 1.4E-117 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_17320 6b28e0ae839b9630779712e9facc09c8 635 SMART SM00458 508 635 6.6E-24 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_27780 178346168cdde6f2925cbce941e70100 352 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 278 5.5E-43 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 RAM_27780 178346168cdde6f2925cbce941e70100 352 SUPERFAMILY SSF51735 1 343 3.04E-75 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_36635 487bf3bef8ffb1713ea697618ecd6b40 236 Pfam PF07729 FCD domain 103 220 3.6E-23 T 13-10-2018 IPR011711 GntR, C-terminal RAM_36635 487bf3bef8ffb1713ea697618ecd6b40 236 Gene3D G3DSA:1.20.120.530 95 232 1.4E-22 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_36635 487bf3bef8ffb1713ea697618ecd6b40 236 SMART SM00895 101 221 1.4E-16 T 13-10-2018 IPR011711 GntR, C-terminal RAM_36635 487bf3bef8ffb1713ea697618ecd6b40 236 SUPERFAMILY SSF48008 98 228 8.11E-20 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_36635 487bf3bef8ffb1713ea697618ecd6b40 236 Gene3D G3DSA:1.10.10.10 14 91 3.8E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_36635 487bf3bef8ffb1713ea697618ecd6b40 236 SUPERFAMILY SSF46785 28 95 1.2E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_36635 487bf3bef8ffb1713ea697618ecd6b40 236 SMART SM00345 33 91 1.1E-13 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_36635 487bf3bef8ffb1713ea697618ecd6b40 236 Pfam PF00392 Bacterial regulatory proteins, gntR family 31 91 1.9E-17 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_33555 2d02c341e128360c402ea60bb0cd4ec9 258 SUPERFAMILY SSF55781 38 175 8.59E-16 T 13-10-2018 RAM_33555 2d02c341e128360c402ea60bb0cd4ec9 258 Pfam PF13185 GAF domain 38 174 1.0E-7 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_33555 2d02c341e128360c402ea60bb0cd4ec9 258 Gene3D G3DSA:3.30.450.40 36 179 1.6E-13 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_33555 2d02c341e128360c402ea60bb0cd4ec9 258 SMART SM01012 165 243 5.1E-6 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 RAM_41150 8a1de21b084bd3aa20584fff5512e523 503 Gene3D G3DSA:1.20.1740.10 20 493 2.4E-114 T 13-10-2018 RAM_41150 8a1de21b084bd3aa20584fff5512e523 503 Pfam PF13520 Amino acid permease 25 458 8.0E-50 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RAM_41150 8a1de21b084bd3aa20584fff5512e523 503 PIRSF PIRSF006060 3 501 1.4E-87 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RAM_09650 861c92b87627b49753490bae2546aa90 120 Gene3D G3DSA:3.30.70.100 30 119 1.2E-25 T 13-10-2018 RAM_09650 861c92b87627b49753490bae2546aa90 120 SUPERFAMILY SSF54975 32 118 5.45E-24 T 13-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 RAM_09650 861c92b87627b49753490bae2546aa90 120 Pfam PF00708 Acylphosphatase 36 117 8.0E-22 T 13-10-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 RAM_09650 861c92b87627b49753490bae2546aa90 120 ProSitePatterns PS00150 Acylphosphatase signature 1. 39 49 - T 13-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 RAM_03255 c0ebe18815cf3366a6835960b0a394ba 421 Pfam PF00067 Cytochrome P450 287 385 6.8E-17 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_03255 c0ebe18815cf3366a6835960b0a394ba 421 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 358 367 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RAM_03255 c0ebe18815cf3366a6835960b0a394ba 421 SUPERFAMILY SSF48264 14 417 7.99E-94 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_03255 c0ebe18815cf3366a6835960b0a394ba 421 PRINTS PR00359 B-class P450 signature 103 114 1.6E-47 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03255 c0ebe18815cf3366a6835960b0a394ba 421 PRINTS PR00359 B-class P450 signature 287 298 1.6E-47 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03255 c0ebe18815cf3366a6835960b0a394ba 421 PRINTS PR00359 B-class P450 signature 332 347 1.6E-47 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03255 c0ebe18815cf3366a6835960b0a394ba 421 PRINTS PR00359 B-class P450 signature 356 365 1.6E-47 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03255 c0ebe18815cf3366a6835960b0a394ba 421 PRINTS PR00359 B-class P450 signature 365 376 1.6E-47 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03255 c0ebe18815cf3366a6835960b0a394ba 421 PRINTS PR00359 B-class P450 signature 153 169 1.6E-47 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03255 c0ebe18815cf3366a6835960b0a394ba 421 PRINTS PR00359 B-class P450 signature 205 227 1.6E-47 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03255 c0ebe18815cf3366a6835960b0a394ba 421 PRINTS PR00359 B-class P450 signature 304 331 1.6E-47 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03255 c0ebe18815cf3366a6835960b0a394ba 421 PRINTS PR00359 B-class P450 signature 170 185 1.6E-47 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03255 c0ebe18815cf3366a6835960b0a394ba 421 Gene3D G3DSA:1.10.630.10 2 420 3.4E-115 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_47270 f6114683b6d9eb2bc8a666402085b26e 330 Gene3D G3DSA:3.40.50.920 205 326 7.2E-39 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RAM_47270 f6114683b6d9eb2bc8a666402085b26e 330 SUPERFAMILY SSF52922 202 327 2.88E-32 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RAM_47270 f6114683b6d9eb2bc8a666402085b26e 330 Pfam PF02779 Transketolase, pyrimidine binding domain 6 181 7.9E-44 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain RAM_47270 f6114683b6d9eb2bc8a666402085b26e 330 Pfam PF02780 Transketolase, C-terminal domain 202 320 1.1E-31 T 13-10-2018 IPR033248 Transketolase, C-terminal domain RAM_47270 f6114683b6d9eb2bc8a666402085b26e 330 SUPERFAMILY SSF52518 6 184 1.87E-64 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_47270 f6114683b6d9eb2bc8a666402085b26e 330 SMART SM00861 7 182 6.3E-66 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain RAM_47270 f6114683b6d9eb2bc8a666402085b26e 330 Gene3D G3DSA:3.40.50.970 4 204 6.0E-77 T 13-10-2018 RAM_03170 fa4b710071321f7e967d6575b01f5c00 1728 Gene3D G3DSA:3.30.70.3290 481 904 4.0E-151 T 13-10-2018 RAM_03170 fa4b710071321f7e967d6575b01f5c00 1728 SMART SM00823 Phosphopantetheine attachment site 1576 1648 8.8E-31 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_03170 fa4b710071321f7e967d6575b01f5c00 1728 SUPERFAMILY SSF55048 686 751 2.35E-14 T 13-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding RAM_03170 fa4b710071321f7e967d6575b01f5c00 1728 SMART SM01294 1577 1644 4.8E-4 T 13-10-2018 RAM_03170 fa4b710071321f7e967d6575b01f5c00 1728 Pfam PF00698 Acyl transferase domain 563 878 1.5E-84 T 13-10-2018 IPR014043 Acyl transferase RAM_03170 fa4b710071321f7e967d6575b01f5c00 1728 Pfam PF08659 KR domain 1300 1473 4.3E-51 T 13-10-2018 IPR013968 Polyketide synthase, ketoreductase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_03170 fa4b710071321f7e967d6575b01f5c00 1728 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 565 859 1.5E-118 T 13-10-2018 IPR020801 Polyketide synthase, acyl transferase domain RAM_03170 fa4b710071321f7e967d6575b01f5c00 1728 SUPERFAMILY SSF51735 1155 1291 5.12E-24 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_03170 fa4b710071321f7e967d6575b01f5c00 1728 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 412 487 2.4E-11 T 13-10-2018 IPR032821 Ketoacyl-synthetase, C-terminal extension Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_03170 fa4b710071321f7e967d6575b01f5c00 1728 SUPERFAMILY SSF101173 4 34 2.48E-5 T 13-10-2018 IPR036299 Polyketide synthase, docking domain superfmaily RAM_03170 fa4b710071321f7e967d6575b01f5c00 1728 Gene3D G3DSA:3.40.47.10 25 480 9.5E-186 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_03170 fa4b710071321f7e967d6575b01f5c00 1728 Gene3D G3DSA:3.40.366.10 563 862 4.0E-151 T 13-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 RAM_03170 fa4b710071321f7e967d6575b01f5c00 1728 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 34 284 1.3E-84 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal RAM_03170 fa4b710071321f7e967d6575b01f5c00 1728 Gene3D G3DSA:3.40.50.720 1157 1544 5.3E-111 T 13-10-2018 RAM_03170 fa4b710071321f7e967d6575b01f5c00 1728 SMART SM00825 Beta-ketoacyl synthase 36 462 5.5E-207 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RAM_03170 fa4b710071321f7e967d6575b01f5c00 1728 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 197 213 - T 13-10-2018 IPR018201 Beta-ketoacyl synthase, active site RAM_03170 fa4b710071321f7e967d6575b01f5c00 1728 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1603 1618 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_03170 fa4b710071321f7e967d6575b01f5c00 1728 Gene3D G3DSA:3.10.129.110 909 1156 1.2E-72 T 13-10-2018 RAM_03170 fa4b710071321f7e967d6575b01f5c00 1728 Gene3D G3DSA:1.10.1200.10 1556 1649 1.5E-34 T 13-10-2018 IPR036736 ACP-like superfamily RAM_03170 fa4b710071321f7e967d6575b01f5c00 1728 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 1300 1475 2.3E-49 T 13-10-2018 RAM_03170 fa4b710071321f7e967d6575b01f5c00 1728 Pfam PF14765 Polyketide synthase dehydratase 915 1149 2.9E-30 T 13-10-2018 IPR020807 Polyketide synthase, dehydratase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_03170 fa4b710071321f7e967d6575b01f5c00 1728 Pfam PF08990 Erythronolide synthase docking 2 27 5.3E-9 T 13-10-2018 IPR015083 Polyketide synthase, docking domain GO:0016740|GO:0048037 RAM_03170 fa4b710071321f7e967d6575b01f5c00 1728 SMART SM00826 911 1107 9.1E-49 T 13-10-2018 IPR020807 Polyketide synthase, dehydratase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_03170 fa4b710071321f7e967d6575b01f5c00 1728 SUPERFAMILY SSF53901 31 408 4.83E-100 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_03170 fa4b710071321f7e967d6575b01f5c00 1728 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 292 409 3.2E-45 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal RAM_03170 fa4b710071321f7e967d6575b01f5c00 1728 SUPERFAMILY SSF51735 1300 1513 1.32E-38 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_03170 fa4b710071321f7e967d6575b01f5c00 1728 SUPERFAMILY SSF52151 561 855 1.6E-67 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RAM_03170 fa4b710071321f7e967d6575b01f5c00 1728 Pfam PF00550 Phosphopantetheine attachment site 1578 1644 5.0E-10 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_03170 fa4b710071321f7e967d6575b01f5c00 1728 SUPERFAMILY SSF47336 1570 1655 4.71E-22 T 13-10-2018 IPR036736 ACP-like superfamily RAM_05050 0de02c17301cfe9102f7d4c10da27a0f 394 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 9 368 36.89 T 13-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 RAM_05050 0de02c17301cfe9102f7d4c10da27a0f 394 SUPERFAMILY SSF51246 312 389 5.26E-15 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 RAM_05050 0de02c17301cfe9102f7d4c10da27a0f 394 Gene3D G3DSA:3.30.1490.20 111 186 3.7E-13 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 RAM_05050 0de02c17301cfe9102f7d4c10da27a0f 394 SUPERFAMILY SSF56059 106 306 7.42E-56 T 13-10-2018 RAM_05050 0de02c17301cfe9102f7d4c10da27a0f 394 SUPERFAMILY SSF52440 6 102 2.88E-20 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RAM_05050 0de02c17301cfe9102f7d4c10da27a0f 394 Gene3D G3DSA:3.30.470.20 187 393 5.7E-66 T 13-10-2018 RAM_05050 0de02c17301cfe9102f7d4c10da27a0f 394 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 10 372 2.0E-110 T 13-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 RAM_05050 0de02c17301cfe9102f7d4c10da27a0f 394 Gene3D G3DSA:3.40.50.20 6 110 1.2E-26 T 13-10-2018 RAM_05050 0de02c17301cfe9102f7d4c10da27a0f 394 Pfam PF02222 ATP-grasp domain 117 286 5.7E-46 T 13-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type RAM_02365 3e0091d50ae0e5ccb739bf76a3d5e9ef 229 SUPERFAMILY SSF52172 3 119 3.7E-40 T 13-10-2018 IPR011006 CheY-like superfamily RAM_02365 3e0091d50ae0e5ccb739bf76a3d5e9ef 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 227 6.0E-27 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_02365 3e0091d50ae0e5ccb739bf76a3d5e9ef 229 Pfam PF00072 Response regulator receiver domain 4 113 4.2E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_02365 3e0091d50ae0e5ccb739bf76a3d5e9ef 229 SMART SM00862 151 227 4.9E-29 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_02365 3e0091d50ae0e5ccb739bf76a3d5e9ef 229 Gene3D G3DSA:1.10.10.10 123 229 5.6E-39 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_02365 3e0091d50ae0e5ccb739bf76a3d5e9ef 229 SUPERFAMILY SSF46894 131 228 1.3E-31 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_02365 3e0091d50ae0e5ccb739bf76a3d5e9ef 229 Gene3D G3DSA:3.40.50.2300 1 121 4.1E-36 T 13-10-2018 RAM_02365 3e0091d50ae0e5ccb739bf76a3d5e9ef 229 SMART SM00448 2 112 5.5E-44 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_28380 d0658f8e0f5dd60b8a25ead59a44eb47 300 ProSitePatterns PS01095 Chitinases family 18 active site. 153 161 - T 13-10-2018 IPR001579 Glycoside hydrolase, chitinase active site GO:0004553|GO:0005975 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 RAM_28380 d0658f8e0f5dd60b8a25ead59a44eb47 300 Gene3D G3DSA:3.20.20.80 33 300 5.9E-83 T 13-10-2018 RAM_28380 d0658f8e0f5dd60b8a25ead59a44eb47 300 SUPERFAMILY SSF51445 34 277 3.39E-62 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_28380 d0658f8e0f5dd60b8a25ead59a44eb47 300 Pfam PF00704 Glycosyl hydrolases family 18 75 194 8.5E-17 T 13-10-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 RAM_01305 f4919b3d5bf1044df6c14f5165a75b6a 295 Gene3D G3DSA:1.10.3720.10 83 279 2.3E-22 T 13-10-2018 IPR035906 MetI-like superfamily RAM_01305 f4919b3d5bf1044df6c14f5165a75b6a 295 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 110 270 7.3E-22 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_01305 f4919b3d5bf1044df6c14f5165a75b6a 295 SUPERFAMILY SSF161098 87 270 2.09E-29 T 13-10-2018 IPR035906 MetI-like superfamily RAM_41870 c5a96a97b591bf5877d197ec7fbee086 1056 PRINTS PR00364 Disease resistance protein signature 282 297 1.7E-5 T 13-10-2018 RAM_41870 c5a96a97b591bf5877d197ec7fbee086 1056 PRINTS PR00364 Disease resistance protein signature 355 369 1.7E-5 T 13-10-2018 RAM_41870 c5a96a97b591bf5877d197ec7fbee086 1056 PRINTS PR00364 Disease resistance protein signature 459 473 1.7E-5 T 13-10-2018 RAM_41870 c5a96a97b591bf5877d197ec7fbee086 1056 SUPERFAMILY SSF52540 254 523 1.33E-17 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_41870 c5a96a97b591bf5877d197ec7fbee086 1056 Gene3D G3DSA:1.25.40.10 751 1050 1.4E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_41870 c5a96a97b591bf5877d197ec7fbee086 1056 SUPERFAMILY SSF46894 5 92 6.24E-11 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_41870 c5a96a97b591bf5877d197ec7fbee086 1056 Gene3D G3DSA:1.10.10.10 1 95 4.7E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_41870 c5a96a97b591bf5877d197ec7fbee086 1056 Gene3D G3DSA:3.40.50.300 254 404 8.3E-14 T 13-10-2018 RAM_41870 c5a96a97b591bf5877d197ec7fbee086 1056 Pfam PF00486 Transcriptional regulatory protein, C terminal 30 91 5.2E-6 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_41870 c5a96a97b591bf5877d197ec7fbee086 1056 SMART SM00862 18 92 9.5E-7 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_41870 c5a96a97b591bf5877d197ec7fbee086 1056 Gene3D G3DSA:1.25.40.10 96 253 5.3E-36 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_41870 c5a96a97b591bf5877d197ec7fbee086 1056 SUPERFAMILY SSF48452 96 258 3.08E-26 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_41870 c5a96a97b591bf5877d197ec7fbee086 1056 SMART SM01043 97 238 4.9E-33 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_41870 c5a96a97b591bf5877d197ec7fbee086 1056 Pfam PF03704 Bacterial transcriptional activator domain 97 238 3.6E-33 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_17790 50ae4d8e7096261b875cd36355606ed7 411 SUPERFAMILY SSF53901 215 408 8.91E-63 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_17790 50ae4d8e7096261b875cd36355606ed7 411 Gene3D G3DSA:3.40.47.10 4 256 5.7E-71 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_17790 50ae4d8e7096261b875cd36355606ed7 411 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 156 172 - T 13-10-2018 IPR018201 Beta-ketoacyl synthase, active site RAM_17790 50ae4d8e7096261b875cd36355606ed7 411 SUPERFAMILY SSF53901 7 253 4.76E-64 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_17790 50ae4d8e7096261b875cd36355606ed7 411 Gene3D G3DSA:3.40.47.10 262 406 6.5E-41 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_17790 50ae4d8e7096261b875cd36355606ed7 411 SMART SM00825 Beta-ketoacyl synthase 7 408 2.5E-13 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RAM_17790 50ae4d8e7096261b875cd36355606ed7 411 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 257 367 2.6E-29 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal RAM_17790 50ae4d8e7096261b875cd36355606ed7 411 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 8 248 4.1E-45 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal RAM_16005 7cd0ac539b19af1d9e1ea5a0e1d3bf1e 246 Gene3D G3DSA:3.50.30.100 1 211 1.4E-46 T 13-10-2018 RAM_16005 7cd0ac539b19af1d9e1ea5a0e1d3bf1e 246 SUPERFAMILY SSF89562 21 198 1.7E-36 T 13-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily RAM_16005 7cd0ac539b19af1d9e1ea5a0e1d3bf1e 246 Pfam PF03737 Aldolase/RraA 30 189 2.5E-33 T 13-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein RAM_20765 5734ee0891778fd1650d589ccf07887b 491 TIGRFAM TIGR02734 crtI_fam: phytoene desaturase 11 489 1.2E-149 T 13-10-2018 IPR014105 Carotenoid/retinoid oxidoreductase GO:0016117|GO:0055114 RAM_20765 5734ee0891778fd1650d589ccf07887b 491 SUPERFAMILY SSF51905 10 486 7.2E-61 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_20765 5734ee0891778fd1650d589ccf07887b 491 Pfam PF01593 Flavin containing amine oxidoreductase 18 486 1.6E-42 T 13-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 RAM_20765 5734ee0891778fd1650d589ccf07887b 491 Gene3D G3DSA:3.50.50.60 8 122 6.7E-22 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_20765 5734ee0891778fd1650d589ccf07887b 491 Gene3D G3DSA:3.50.50.60 201 314 2.8E-14 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_20765 5734ee0891778fd1650d589ccf07887b 491 PRINTS PR00419 Adrenodoxin reductase family signature 10 32 7.5E-6 T 13-10-2018 RAM_20765 5734ee0891778fd1650d589ccf07887b 491 PRINTS PR00419 Adrenodoxin reductase family signature 33 46 7.5E-6 T 13-10-2018 RAM_44770 71138bbd7ed7d43fd1327e8a96737bf0 568 SUPERFAMILY SSF53067 164 345 1.37E-28 T 13-10-2018 RAM_44770 71138bbd7ed7d43fd1327e8a96737bf0 568 Gene3D G3DSA:3.30.420.40 160 335 8.3E-90 T 13-10-2018 RAM_44770 71138bbd7ed7d43fd1327e8a96737bf0 568 SUPERFAMILY SSF53067 3 154 1.36E-20 T 13-10-2018 RAM_44770 71138bbd7ed7d43fd1327e8a96737bf0 568 Gene3D G3DSA:3.30.420.40 5 344 8.3E-90 T 13-10-2018 RAM_44770 71138bbd7ed7d43fd1327e8a96737bf0 568 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 307 321 - T 13-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 RAM_44770 71138bbd7ed7d43fd1327e8a96737bf0 568 Pfam PF00012 Hsp70 protein 90 344 2.7E-26 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RAM_44770 71138bbd7ed7d43fd1327e8a96737bf0 568 Gene3D G3DSA:3.90.640.10 198 285 8.3E-90 T 13-10-2018 RAM_22455 6e1316b7912db4e6c1f3b865e65a6516 277 Gene3D G3DSA:3.40.50.2300 105 266 1.6E-54 T 13-10-2018 RAM_22455 6e1316b7912db4e6c1f3b865e65a6516 277 Gene3D G3DSA:3.40.50.2300 36 262 1.6E-54 T 13-10-2018 RAM_22455 6e1316b7912db4e6c1f3b865e65a6516 277 SUPERFAMILY SSF53822 34 272 3.81E-46 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_22455 6e1316b7912db4e6c1f3b865e65a6516 277 Pfam PF13377 Periplasmic binding protein-like domain 114 271 4.0E-31 T 13-10-2018 RAM_03475 81df9f90f39637604d967d196607931f 278 PIRSF PIRSF002158 4 274 2.7E-91 T 13-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_03475 81df9f90f39637604d967d196607931f 278 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 126 251 3.7E-53 T 13-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 RAM_03475 81df9f90f39637604d967d196607931f 278 SMART SM01383 42 119 2.0E-43 T 13-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_03475 81df9f90f39637604d967d196607931f 278 ProSitePatterns PS00467 Ribosomal protein L2 signature. 219 230 - T 13-10-2018 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_03475 81df9f90f39637604d967d196607931f 278 SUPERFAMILY SSF50249 3 126 1.3E-49 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_03475 81df9f90f39637604d967d196607931f 278 Gene3D G3DSA:2.30.30.30 119 196 4.0E-30 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 RAM_03475 81df9f90f39637604d967d196607931f 278 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 272 46.857 T 13-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 RAM_03475 81df9f90f39637604d967d196607931f 278 SMART SM01382 125 253 5.1E-86 T 13-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 RAM_03475 81df9f90f39637604d967d196607931f 278 Gene3D G3DSA:4.10.950.10 197 273 1.4E-29 T 13-10-2018 IPR014726 Ribosomal protein L2, domain 3 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_03475 81df9f90f39637604d967d196607931f 278 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 3 272 1.3E-123 T 13-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 RAM_03475 81df9f90f39637604d967d196607931f 278 Gene3D G3DSA:2.40.50.140 1 115 3.9E-48 T 13-10-2018 RAM_03475 81df9f90f39637604d967d196607931f 278 SUPERFAMILY SSF50104 127 266 7.22E-54 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily RAM_03475 81df9f90f39637604d967d196607931f 278 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 118 6.2E-34 T 13-10-2018 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_46355 9adc857e7b6c4b8c07f3cf06528c421d 292 SUPERFAMILY SSF47413 15 76 8.89E-7 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_46355 9adc857e7b6c4b8c07f3cf06528c421d 292 Pfam PF13560 Helix-turn-helix domain 22 83 2.0E-14 T 13-10-2018 RAM_46355 9adc857e7b6c4b8c07f3cf06528c421d 292 Gene3D G3DSA:1.10.260.40 18 80 8.0E-6 T 13-10-2018 RAM_47080 6fe06cebdee9776ed537dc9044a0f592 193 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 3 181 1.3E-63 T 13-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 RAM_47080 6fe06cebdee9776ed537dc9044a0f592 193 Pfam PF00692 dUTPase 70 174 1.8E-9 T 13-10-2018 IPR029054 dUTPase-like RAM_47080 6fe06cebdee9776ed537dc9044a0f592 193 Hamap MF_00146 dCTP deaminase [dcd]. 1 182 33.762 T 13-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 RAM_47080 6fe06cebdee9776ed537dc9044a0f592 193 Gene3D G3DSA:2.70.40.10 1 186 2.2E-58 T 13-10-2018 IPR036157 dUTPase-like superfamily RAM_47080 6fe06cebdee9776ed537dc9044a0f592 193 SUPERFAMILY SSF51283 2 184 4.58E-56 T 13-10-2018 IPR036157 dUTPase-like superfamily RAM_04825 8e30c3723bcf6d3a287b4982e60095cc 264 Gene3D G3DSA:3.40.630.30 1 123 5.8E-15 T 13-10-2018 RAM_04825 8e30c3723bcf6d3a287b4982e60095cc 264 Pfam PF13673 Acetyltransferase (GNAT) domain 43 121 1.7E-7 T 13-10-2018 IPR000182 GNAT domain RAM_04825 8e30c3723bcf6d3a287b4982e60095cc 264 SUPERFAMILY SSF55729 6 208 1.05E-17 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_45130 b0a8f39615154e3198a4af97cd33faad 268 Gene3D G3DSA:2.40.10.10 135 215 1.9E-6 T 13-10-2018 RAM_45130 b0a8f39615154e3198a4af97cd33faad 268 Gene3D G3DSA:2.40.10.10 83 134 1.9E-6 T 13-10-2018 RAM_45130 b0a8f39615154e3198a4af97cd33faad 268 SUPERFAMILY SSF50494 14 220 1.76E-14 T 13-10-2018 IPR009003 Peptidase S1, PA clan RAM_45130 b0a8f39615154e3198a4af97cd33faad 268 Pfam PF13365 Trypsin-like peptidase domain 40 206 1.3E-9 T 13-10-2018 RAM_31085 ca25065ff435698ffa1f13e1d253b2b6 432 SUPERFAMILY SSF51419 58 272 6.8E-25 T 13-10-2018 IPR029066 PLP-binding barrel RAM_31085 ca25065ff435698ffa1f13e1d253b2b6 432 Pfam PF01168 Alanine racemase, N-terminal domain 58 260 4.1E-12 T 13-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RAM_31085 ca25065ff435698ffa1f13e1d253b2b6 432 Gene3D G3DSA:3.20.20.10 60 298 5.0E-131 T 13-10-2018 IPR029066 PLP-binding barrel RAM_31085 ca25065ff435698ffa1f13e1d253b2b6 432 Gene3D G3DSA:2.40.37.20 41 432 5.0E-131 T 13-10-2018 RAM_31085 ca25065ff435698ffa1f13e1d253b2b6 432 Pfam PF14031 Putative serine dehydratase domain 321 416 4.9E-13 T 13-10-2018 IPR026956 D-serine dehydratase-like domain RAM_31085 ca25065ff435698ffa1f13e1d253b2b6 432 SMART SM01119 321 418 7.5E-32 T 13-10-2018 IPR026956 D-serine dehydratase-like domain RAM_25935 2369a654e797ddd44923f869e3848b82 320 SUPERFAMILY SSF102198 97 319 1.14E-21 T 13-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 RAM_25935 2369a654e797ddd44923f869e3848b82 320 Gene3D G3DSA:3.50.30.50 69 320 7.1E-19 T 13-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 RAM_25935 2369a654e797ddd44923f869e3848b82 320 Pfam PF04199 Putative cyclase 85 251 5.5E-20 T 13-10-2018 IPR007325 Kynurenine formamidase/cyclase-like GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 RAM_16635 257555dd8789783793c6264121b119a0 511 Pfam PF00501 AMP-binding enzyme 14 408 4.8E-93 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_16635 257555dd8789783793c6264121b119a0 511 Pfam PF13193 AMP-binding enzyme C-terminal domain 417 492 8.0E-20 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_16635 257555dd8789783793c6264121b119a0 511 Gene3D G3DSA:3.40.50.12780 7 401 8.5E-113 T 13-10-2018 RAM_16635 257555dd8789783793c6264121b119a0 511 SUPERFAMILY SSF56801 9 504 4.71E-147 T 13-10-2018 RAM_16635 257555dd8789783793c6264121b119a0 511 ProSitePatterns PS00455 Putative AMP-binding domain signature. 161 172 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_16635 257555dd8789783793c6264121b119a0 511 Gene3D G3DSA:3.30.300.310 404 508 2.7E-32 T 13-10-2018 RAM_34650 34ec3c81c5a280f0e1ef77bf0186375c 223 SUPERFAMILY SSF46785 145 222 3.35E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_34650 34ec3c81c5a280f0e1ef77bf0186375c 223 SUPERFAMILY SSF51206 9 138 8.64E-29 T 13-10-2018 IPR018490 Cyclic nucleotide-binding-like RAM_34650 34ec3c81c5a280f0e1ef77bf0186375c 223 Gene3D G3DSA:2.60.120.10 3 140 3.1E-32 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_34650 34ec3c81c5a280f0e1ef77bf0186375c 223 SMART SM00419 166 214 5.0E-4 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RAM_34650 34ec3c81c5a280f0e1ef77bf0186375c 223 Pfam PF00027 Cyclic nucleotide-binding domain 27 114 1.4E-20 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain RAM_34650 34ec3c81c5a280f0e1ef77bf0186375c 223 Pfam PF13545 Crp-like helix-turn-helix domain 148 221 6.5E-13 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RAM_34650 34ec3c81c5a280f0e1ef77bf0186375c 223 SMART SM00100 9 127 2.3E-20 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain RAM_34650 34ec3c81c5a280f0e1ef77bf0186375c 223 Gene3D G3DSA:1.10.10.10 144 223 1.9E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_24185 f6aae630c0bb15dc3152a7120d29f032 336 PRINTS PR01042 Aspartyl-tRNA synthetase signature 99 112 9.9E-6 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 RAM_24185 f6aae630c0bb15dc3152a7120d29f032 336 PRINTS PR01042 Aspartyl-tRNA synthetase signature 251 267 9.9E-6 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 RAM_24185 f6aae630c0bb15dc3152a7120d29f032 336 PRINTS PR01042 Aspartyl-tRNA synthetase signature 291 305 9.9E-6 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 RAM_24185 f6aae630c0bb15dc3152a7120d29f032 336 PRINTS PR01042 Aspartyl-tRNA synthetase signature 83 95 9.9E-6 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 RAM_24185 f6aae630c0bb15dc3152a7120d29f032 336 Pfam PF00152 tRNA synthetases class II (D, K and N) 22 330 7.0E-59 T 13-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 RAM_24185 f6aae630c0bb15dc3152a7120d29f032 336 SUPERFAMILY SSF55681 24 330 2.67E-59 T 13-10-2018 RAM_24185 f6aae630c0bb15dc3152a7120d29f032 336 Gene3D G3DSA:3.30.930.10 11 336 1.8E-75 T 13-10-2018 RAM_20795 b047ecda8bd6c7a541043b07979fb1b4 312 Pfam PF03631 Virulence factor BrkB 45 291 5.0E-16 T 13-10-2018 IPR017039 Virulence factor BrkB RAM_00660 54efe9c2af93a86cd280d9d22d4a529d 286 SUPERFAMILY SSF57716 227 271 1.8E-11 T 13-10-2018 RAM_00660 54efe9c2af93a86cd280d9d22d4a529d 286 SMART SM01232 138 228 1.0E-17 T 13-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 RAM_00660 54efe9c2af93a86cd280d9d22d4a529d 286 SUPERFAMILY SSF81624 2 143 5.76E-22 T 13-10-2018 IPR035937 MutM-like, N-terminal RAM_00660 54efe9c2af93a86cd280d9d22d4a529d 286 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 138 219 5.3E-14 T 13-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 RAM_00660 54efe9c2af93a86cd280d9d22d4a529d 286 Pfam PF06827 Zinc finger found in FPG and IleRS 243 270 4.1E-8 T 13-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 RAM_00660 54efe9c2af93a86cd280d9d22d4a529d 286 SMART SM00898 2 124 1.2E-18 T 13-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 RAM_00660 54efe9c2af93a86cd280d9d22d4a529d 286 SUPERFAMILY SSF46946 137 218 9.03E-19 T 13-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 RAM_00660 54efe9c2af93a86cd280d9d22d4a529d 286 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 86 3.0E-15 T 13-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 RAM_00660 54efe9c2af93a86cd280d9d22d4a529d 286 Gene3D G3DSA:1.10.8.50 138 271 3.7E-30 T 13-10-2018 RAM_00660 54efe9c2af93a86cd280d9d22d4a529d 286 Gene3D G3DSA:3.20.190.10 1 111 8.7E-14 T 13-10-2018 IPR035937 MutM-like, N-terminal RAM_47405 b401eded17dfdf2039187bd54a66756e 551 Gene3D G3DSA:1.20.1730.10 32 486 1.2E-29 T 13-10-2018 IPR038377 Sodium/glucose symporter superfamily RAM_06555 b2dee15d9069c0080fde6026422770ca 380 SUPERFAMILY SSF54373 169 263 1.49E-23 T 13-10-2018 RAM_06555 b2dee15d9069c0080fde6026422770ca 380 Pfam PF01494 FAD binding domain 5 328 2.2E-46 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_06555 b2dee15d9069c0080fde6026422770ca 380 Gene3D G3DSA:3.30.9.10 75 377 2.6E-116 T 13-10-2018 RAM_06555 b2dee15d9069c0080fde6026422770ca 380 SUPERFAMILY SSF51905 5 342 1.05E-41 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_06555 b2dee15d9069c0080fde6026422770ca 380 Gene3D G3DSA:3.50.50.60 5 339 2.6E-116 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_06555 b2dee15d9069c0080fde6026422770ca 380 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 266 281 1.1E-19 T 13-10-2018 RAM_06555 b2dee15d9069c0080fde6026422770ca 380 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 281 297 1.1E-19 T 13-10-2018 RAM_06555 b2dee15d9069c0080fde6026422770ca 380 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 1.1E-19 T 13-10-2018 RAM_06555 b2dee15d9069c0080fde6026422770ca 380 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 145 160 1.1E-19 T 13-10-2018 RAM_14280 4ffaf9c15ccb6b9702e37eb5005eed6e 326 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 37 315 1.3E-96 T 13-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 RAM_14280 4ffaf9c15ccb6b9702e37eb5005eed6e 326 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 34 316 18.734 T 13-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 RAM_14280 4ffaf9c15ccb6b9702e37eb5005eed6e 326 Gene3D G3DSA:1.10.357.140 46 198 3.8E-17 T 13-10-2018 RAM_14280 4ffaf9c15ccb6b9702e37eb5005eed6e 326 Pfam PF01040 UbiA prenyltransferase family 50 298 2.6E-64 T 13-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 RAM_09080 a742a54c83c1ad55d8e792f79e63ece5 161 Gene3D G3DSA:3.40.50.620 1 158 1.9E-54 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAM_09080 a742a54c83c1ad55d8e792f79e63ece5 161 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 2 157 33.429 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 RAM_09080 a742a54c83c1ad55d8e792f79e63ece5 161 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 3 156 3.6E-57 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 RAM_09080 a742a54c83c1ad55d8e792f79e63ece5 161 Pfam PF01467 Cytidylyltransferase-like 6 132 3.9E-20 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RAM_09080 a742a54c83c1ad55d8e792f79e63ece5 161 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 3 62 5.7E-16 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RAM_09080 a742a54c83c1ad55d8e792f79e63ece5 161 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 20 41 4.7E-48 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 RAM_09080 a742a54c83c1ad55d8e792f79e63ece5 161 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 111 133 4.7E-48 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 RAM_09080 a742a54c83c1ad55d8e792f79e63ece5 161 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 85 101 4.7E-48 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 RAM_09080 a742a54c83c1ad55d8e792f79e63ece5 161 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 2 20 4.7E-48 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 RAM_09080 a742a54c83c1ad55d8e792f79e63ece5 161 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 49 73 4.7E-48 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 RAM_09080 a742a54c83c1ad55d8e792f79e63ece5 161 ProDom PD016147 LIGASE LYASE CITRATE PRO-3S-LYASE SYNTHETASE TRANSFERASE CYTIDYLTRANSFERASE-RELATED:CITRATE ACETATE:SH-CITRATE CITC PLASMID 11 75 0.002 T 13-10-2018 RAM_09080 a742a54c83c1ad55d8e792f79e63ece5 161 SUPERFAMILY SSF52374 1 155 1.31E-43 T 13-10-2018 RAM_04980 124b06f90ca3f8e5c32369539901f763 1086 Gene3D G3DSA:2.70.98.10 32 395 3.9E-242 T 13-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 RAM_04980 124b06f90ca3f8e5c32369539901f763 1086 TIGRFAM TIGR01180 aman2_put: putative alpha-1,2-mannosidase 14 765 8.8E-149 T 13-10-2018 IPR005887 Alpha-1,2-mannosidase, putative RAM_04980 124b06f90ca3f8e5c32369539901f763 1086 SUPERFAMILY SSF48208 311 746 1.87E-20 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_04980 124b06f90ca3f8e5c32369539901f763 1086 Gene3D G3DSA:1.20.1050.60 396 493 3.9E-242 T 13-10-2018 RAM_04980 124b06f90ca3f8e5c32369539901f763 1086 Gene3D G3DSA:3.30.2080.10 342 766 3.9E-242 T 13-10-2018 RAM_04980 124b06f90ca3f8e5c32369539901f763 1086 Gene3D G3DSA:1.20.1610.10 494 638 3.9E-242 T 13-10-2018 RAM_04980 124b06f90ca3f8e5c32369539901f763 1086 Pfam PF07971 Glycosyl hydrolase family 92 286 762 1.8E-159 T 13-10-2018 IPR012939 Glycosyl hydrolase family 92 RAM_33580 f90fdac33352369abbd2b7243d90b127 246 Pfam PF03861 ANTAR domain 188 238 3.7E-21 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 RAM_33580 f90fdac33352369abbd2b7243d90b127 246 SUPERFAMILY SSF52172 167 239 8.95E-11 T 13-10-2018 IPR011006 CheY-like superfamily RAM_33580 f90fdac33352369abbd2b7243d90b127 246 SMART SM01012 185 240 1.7E-22 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 RAM_33580 f90fdac33352369abbd2b7243d90b127 246 Pfam PF13185 GAF domain 35 173 9.2E-13 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_33580 f90fdac33352369abbd2b7243d90b127 246 Gene3D G3DSA:1.10.10.10 188 243 1.1E-11 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_33580 f90fdac33352369abbd2b7243d90b127 246 SUPERFAMILY SSF55781 37 184 3.93E-18 T 13-10-2018 RAM_33580 f90fdac33352369abbd2b7243d90b127 246 SMART SM00065 36 183 0.0024 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_33580 f90fdac33352369abbd2b7243d90b127 246 PIRSF PIRSF036625 2 244 5.1E-49 T 13-10-2018 IPR012074 GAF-ANTAR transcription anti-termination regulator, putative RAM_33580 f90fdac33352369abbd2b7243d90b127 246 Gene3D G3DSA:3.30.450.40 10 186 3.3E-19 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_31410 b15174acc1edf18ac11b00ec6ea55977 283 SUPERFAMILY SSF53335 40 264 3.82E-39 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_31410 b15174acc1edf18ac11b00ec6ea55977 283 Pfam PF08241 Methyltransferase domain 86 178 4.3E-19 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 RAM_31410 b15174acc1edf18ac11b00ec6ea55977 283 Gene3D G3DSA:3.40.50.150 69 266 2.3E-41 T 13-10-2018 RAM_40980 90e0cf4d5776a5a8c19427681cc0d190 207 Pfam PF08281 Sigma-70, region 4 133 183 5.8E-15 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_40980 90e0cf4d5776a5a8c19427681cc0d190 207 TIGRFAM TIGR02947 SigH_actino: RNA polymerase sigma-70 factor, TIGR02947 family 11 198 8.9E-109 T 13-10-2018 IPR014293 RNA polymerase sigma-70, actinobacteria GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_40980 90e0cf4d5776a5a8c19427681cc0d190 207 Gene3D G3DSA:1.10.1740.10 9 94 1.9E-35 T 13-10-2018 RAM_40980 90e0cf4d5776a5a8c19427681cc0d190 207 Pfam PF04542 Sigma-70 region 2 28 91 2.6E-18 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_40980 90e0cf4d5776a5a8c19427681cc0d190 207 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 28 186 1.7E-27 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_40980 90e0cf4d5776a5a8c19427681cc0d190 207 SUPERFAMILY SSF88659 131 187 1.03E-16 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_40980 90e0cf4d5776a5a8c19427681cc0d190 207 SUPERFAMILY SSF88946 18 105 6.08E-24 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_40980 90e0cf4d5776a5a8c19427681cc0d190 207 Gene3D G3DSA:1.10.10.10 125 192 4.2E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_05200 c66779b7b8e67be33d9664dc67605b56 448 TIGRFAM TIGR01916 F420_cofE: coenzyme F420-0:L-glutamate ligase 12 242 2.3E-78 T 13-10-2018 IPR008225 Coenzyme F420:L-glutamate ligase GO:0043773|GO:0046872|GO:0051188 KEGG: 00680+6.3.2.31+6.3.2.34|MetaCyc: PWY-5199 RAM_05200 c66779b7b8e67be33d9664dc67605b56 448 Gene3D G3DSA:3.40.109.10 244 441 8.3E-51 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RAM_05200 c66779b7b8e67be33d9664dc67605b56 448 Gene3D G3DSA:3.30.1330.100 16 228 2.0E-67 T 13-10-2018 RAM_05200 c66779b7b8e67be33d9664dc67605b56 448 Hamap MF_01259 Coenzyme F420:L-glutamate ligase [fbiB]. 17 448 50.857 T 13-10-2018 IPR023661 Coenzyme F420:L-glutamate ligase, Actinobacteria GO:0043773|GO:0046872|GO:0051188 KEGG: 00680+6.3.2.31+6.3.2.34|MetaCyc: PWY-5199 RAM_05200 c66779b7b8e67be33d9664dc67605b56 448 Pfam PF00881 Nitroreductase family 259 427 5.4E-27 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 RAM_05200 c66779b7b8e67be33d9664dc67605b56 448 SUPERFAMILY SSF144010 13 247 1.44E-67 T 13-10-2018 RAM_05200 c66779b7b8e67be33d9664dc67605b56 448 SUPERFAMILY SSF55469 254 436 2.62E-35 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RAM_05200 c66779b7b8e67be33d9664dc67605b56 448 Gene3D G3DSA:3.90.1660.10 60 242 2.0E-67 T 13-10-2018 RAM_05200 c66779b7b8e67be33d9664dc67605b56 448 Pfam PF01996 F420-0:Gamma-glutamyl ligase 80 219 4.6E-34 T 13-10-2018 IPR002847 Coenzyme F420:L-glutamate ligase-like domain KEGG: 00680+6.3.2.31+6.3.2.34|MetaCyc: PWY-5199 RAM_05200 c66779b7b8e67be33d9664dc67605b56 448 Pfam PF01996 F420-0:Gamma-glutamyl ligase 20 66 3.1E-7 T 13-10-2018 IPR002847 Coenzyme F420:L-glutamate ligase-like domain KEGG: 00680+6.3.2.31+6.3.2.34|MetaCyc: PWY-5199 RAM_05200 c66779b7b8e67be33d9664dc67605b56 448 TIGRFAM TIGR03553 F420_FbiB_CTERM: F420 biosynthesis protein FbiB, C-terminal domain 255 446 2.6E-88 T 13-10-2018 IPR019943 Coenzyme F420 biosynthesis protein FbiB, C-terminal GO:0016881 KEGG: 00680+6.3.2.31+6.3.2.34|MetaCyc: PWY-5199 RAM_27920 a2343daec5d290f1a6894620c8fdf3d4 781 Hamap MF_01403 Probable phosphoketolase. 8 781 39.354 T 13-10-2018 IPR023962 Probable phosphoketolase RAM_27920 a2343daec5d290f1a6894620c8fdf3d4 781 ProSitePatterns PS60003 Phosphoketolase signature 2. 160 178 - T 13-10-2018 IPR019789 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, thiamine diphosphate binding site GO:0005975|GO:0016832 RAM_27920 a2343daec5d290f1a6894620c8fdf3d4 781 Pfam PF09364 XFP N-terminal domain 13 376 4.6E-169 T 13-10-2018 IPR018970 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, N-terminal RAM_27920 a2343daec5d290f1a6894620c8fdf3d4 781 Gene3D G3DSA:3.40.50.970 2 378 8.0E-165 T 13-10-2018 RAM_27920 a2343daec5d290f1a6894620c8fdf3d4 781 SUPERFAMILY SSF52922 594 732 1.57E-7 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RAM_27920 a2343daec5d290f1a6894620c8fdf3d4 781 SUPERFAMILY SSF52518 14 360 6.13E-71 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_27920 a2343daec5d290f1a6894620c8fdf3d4 781 SUPERFAMILY SSF52518 369 584 1.59E-21 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_27920 a2343daec5d290f1a6894620c8fdf3d4 781 PIRSF PIRSF017245 6 781 0.0 T 13-10-2018 IPR005593 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase GO:0005975|GO:0016832 RAM_27920 a2343daec5d290f1a6894620c8fdf3d4 781 Gene3D G3DSA:3.40.50.920 598 781 9.9E-79 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RAM_27920 a2343daec5d290f1a6894620c8fdf3d4 781 Pfam PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase 391 567 2.5E-88 T 13-10-2018 IPR005593 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase GO:0005975|GO:0016832 RAM_27920 a2343daec5d290f1a6894620c8fdf3d4 781 Gene3D G3DSA:3.40.50.970 379 597 9.6E-103 T 13-10-2018 RAM_27920 a2343daec5d290f1a6894620c8fdf3d4 781 Pfam PF09363 XFP C-terminal domain 578 779 1.9E-89 T 13-10-2018 IPR018969 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, C-terminal GO:0005975|GO:0016832 RAM_36660 e6e94f4a11009e1759188444f90df040 308 Gene3D G3DSA:3.40.50.720 9 295 3.8E-61 T 13-10-2018 RAM_36660 e6e94f4a11009e1759188444f90df040 308 SUPERFAMILY SSF51735 4 258 1.18E-52 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_36660 e6e94f4a11009e1759188444f90df040 308 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 140 156 2.5E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36660 e6e94f4a11009e1759188444f90df040 308 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 184 2.5E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36660 e6e94f4a11009e1759188444f90df040 308 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 186 203 2.5E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36660 e6e94f4a11009e1759188444f90df040 308 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 2.5E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36660 e6e94f4a11009e1759188444f90df040 308 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 93 104 2.5E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36660 e6e94f4a11009e1759188444f90df040 308 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 218 238 2.5E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36660 e6e94f4a11009e1759188444f90df040 308 Pfam PF00106 short chain dehydrogenase 10 198 2.3E-31 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36660 e6e94f4a11009e1759188444f90df040 308 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 93 104 2.8E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36660 e6e94f4a11009e1759188444f90df040 308 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 165 184 2.8E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36660 e6e94f4a11009e1759188444f90df040 308 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 154 2.8E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_46170 fb96bee5f8ed17fb420b188d5aab6a23 475 Gene3D G3DSA:1.10.260.150 141 448 1.0E-70 T 13-10-2018 RAM_46170 fb96bee5f8ed17fb420b188d5aab6a23 475 TIGRFAM TIGR00350 lytR_cpsA_psr: cell envelope-related function transcriptional attenuator common domain 185 351 1.9E-49 T 13-10-2018 IPR004474 Cell envelope-related transcriptional attenuator domain RAM_46170 fb96bee5f8ed17fb420b188d5aab6a23 475 Pfam PF03816 Cell envelope-related transcriptional attenuator domain 186 351 2.5E-43 T 13-10-2018 IPR004474 Cell envelope-related transcriptional attenuator domain RAM_24655 6c42d4f7644a89a797b44d4d8a9d6635 1114 Gene3D G3DSA:1.20.120.20 400 555 1.9E-6 T 13-10-2018 RAM_06715 4dfeaafedd1c14685452dcc9bed288c2 260 Gene3D G3DSA:3.60.15.10 2 255 8.0E-54 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_06715 4dfeaafedd1c14685452dcc9bed288c2 260 SUPERFAMILY SSF56281 6 223 6.58E-27 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_06715 4dfeaafedd1c14685452dcc9bed288c2 260 Pfam PF12706 Beta-lactamase superfamily domain 23 207 2.3E-29 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_00275 95bcdfe19858fe8ad94a10c8864b0cd3 465 SMART SM00331 11 235 9.3E-37 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_00275 95bcdfe19858fe8ad94a10c8864b0cd3 465 Pfam PF13672 Protein phosphatase 2C 18 199 1.5E-12 T 13-10-2018 RAM_00275 95bcdfe19858fe8ad94a10c8864b0cd3 465 SMART SM00332 2 233 3.3E-33 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_00275 95bcdfe19858fe8ad94a10c8864b0cd3 465 Gene3D G3DSA:3.60.40.10 2 236 2.5E-69 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_00275 95bcdfe19858fe8ad94a10c8864b0cd3 465 SUPERFAMILY SSF81606 4 234 1.7E-64 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_43115 1ebcb8165d4afe1c2c241c135406239a 533 Pfam PF07969 Amidohydrolase family 45 528 8.1E-84 T 13-10-2018 IPR013108 Amidohydrolase 3 RAM_43115 1ebcb8165d4afe1c2c241c135406239a 533 SUPERFAMILY SSF51338 3 530 1.13E-13 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_43115 1ebcb8165d4afe1c2c241c135406239a 533 SUPERFAMILY SSF51556 54 488 2.36E-34 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_43115 1ebcb8165d4afe1c2c241c135406239a 533 Gene3D G3DSA:3.10.310.70 73 188 2.2E-124 T 13-10-2018 RAM_43115 1ebcb8165d4afe1c2c241c135406239a 533 Gene3D G3DSA:3.20.20.140 55 487 2.2E-124 T 13-10-2018 RAM_43115 1ebcb8165d4afe1c2c241c135406239a 533 Gene3D G3DSA:2.30.40.10 9 501 2.2E-124 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_41750 bdb588e65287e90b86b3ce86ad00f7c8 289 Pfam PF00248 Aldo/keto reductase family 18 286 3.1E-51 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain RAM_41750 bdb588e65287e90b86b3ce86ad00f7c8 289 Gene3D G3DSA:3.20.20.100 9 288 8.9E-67 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_41750 bdb588e65287e90b86b3ce86ad00f7c8 289 PRINTS PR00069 Aldo-keto reductase signature 113 131 1.1E-8 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_41750 bdb588e65287e90b86b3ce86ad00f7c8 289 PRINTS PR00069 Aldo-keto reductase signature 183 212 1.1E-8 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_41750 bdb588e65287e90b86b3ce86ad00f7c8 289 PRINTS PR00069 Aldo-keto reductase signature 48 72 1.1E-8 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_41750 bdb588e65287e90b86b3ce86ad00f7c8 289 PRINTS PR00069 Aldo-keto reductase signature 220 244 1.1E-8 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_41750 bdb588e65287e90b86b3ce86ad00f7c8 289 PRINTS PR00069 Aldo-keto reductase signature 150 167 1.1E-8 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_41750 bdb588e65287e90b86b3ce86ad00f7c8 289 SUPERFAMILY SSF51430 8 286 2.49E-65 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_34585 891694a83bc1b4882efe3b1d8735bb9e 463 Hamap MF_00303 Trigger factor [tig]. 1 424 19.316 T 13-10-2018 IPR005215 Trigger factor GO:0015031 RAM_34585 891694a83bc1b4882efe3b1d8735bb9e 463 SUPERFAMILY SSF54534 134 244 1.49E-21 T 13-10-2018 RAM_34585 891694a83bc1b4882efe3b1d8735bb9e 463 Gene3D G3DSA:3.10.50.40 151 243 6.3E-66 T 13-10-2018 RAM_34585 891694a83bc1b4882efe3b1d8735bb9e 463 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 258 417 2.0E-33 T 13-10-2018 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 RAM_34585 891694a83bc1b4882efe3b1d8735bb9e 463 Gene3D G3DSA:1.10.3120.10 117 423 6.3E-66 T 13-10-2018 IPR037041 Trigger factor, C-terminal domain superfamily GO:0006457|GO:0015031 RAM_34585 891694a83bc1b4882efe3b1d8735bb9e 463 SUPERFAMILY SSF102735 1 131 7.32E-35 T 13-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 RAM_34585 891694a83bc1b4882efe3b1d8735bb9e 463 SUPERFAMILY SSF109998 246 434 1.37E-39 T 13-10-2018 IPR027304 Trigger factor/SurA domain superfamily RAM_34585 891694a83bc1b4882efe3b1d8735bb9e 463 TIGRFAM TIGR00115 tig: trigger factor 12 416 1.9E-119 T 13-10-2018 IPR005215 Trigger factor GO:0015031 RAM_34585 891694a83bc1b4882efe3b1d8735bb9e 463 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 158 216 2.3E-5 T 13-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain RAM_34585 891694a83bc1b4882efe3b1d8735bb9e 463 PIRSF PIRSF003095 1 442 1.8E-115 T 13-10-2018 IPR005215 Trigger factor GO:0015031 RAM_34585 891694a83bc1b4882efe3b1d8735bb9e 463 Pfam PF05697 Bacterial trigger factor protein (TF) 2 145 1.7E-40 T 13-10-2018 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 RAM_34585 891694a83bc1b4882efe3b1d8735bb9e 463 Gene3D G3DSA:3.30.70.1050 1 116 1.2E-32 T 13-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 RAM_09010 cd384118897b5d6d413798dcfece978d 362 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 22 307 7.6E-62 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_09010 cd384118897b5d6d413798dcfece978d 362 Pfam PF02470 MlaD protein 38 114 3.4E-15 T 13-10-2018 IPR003399 Mce/MlaD RAM_09010 cd384118897b5d6d413798dcfece978d 362 Pfam PF11887 Cholesterol uptake porter CUP1 of Mce4, putative 176 288 3.2E-8 T 13-10-2018 IPR024516 Mammalian cell entry, C-terminal RAM_01075 08e98a30b0da492bedcf08f57c3ea23f 464 Pfam PF00501 AMP-binding enzyme 14 373 9.7E-51 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_01075 08e98a30b0da492bedcf08f57c3ea23f 464 Gene3D G3DSA:3.40.50.12780 6 369 1.7E-63 T 13-10-2018 RAM_01075 08e98a30b0da492bedcf08f57c3ea23f 464 SUPERFAMILY SSF56801 15 462 1.7E-73 T 13-10-2018 RAM_01075 08e98a30b0da492bedcf08f57c3ea23f 464 Gene3D G3DSA:3.30.300.30 375 464 4.4E-5 T 13-10-2018 RAM_01075 08e98a30b0da492bedcf08f57c3ea23f 464 ProSitePatterns PS00455 Putative AMP-binding domain signature. 126 137 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_27040 a849623e69e7e59add2ca819d3b962a3 201 SMART SM00530 30 85 6.7E-13 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_27040 a849623e69e7e59add2ca819d3b962a3 201 SUPERFAMILY SSF51182 78 188 1.09E-16 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RAM_27040 a849623e69e7e59add2ca819d3b962a3 201 Gene3D G3DSA:2.60.120.10 115 200 2.7E-12 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_27040 a849623e69e7e59add2ca819d3b962a3 201 Gene3D G3DSA:1.10.260.40 7 96 3.3E-17 T 13-10-2018 RAM_27040 a849623e69e7e59add2ca819d3b962a3 201 Pfam PF01381 Helix-turn-helix 31 83 7.7E-14 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_27040 a849623e69e7e59add2ca819d3b962a3 201 SUPERFAMILY SSF47413 25 91 2.65E-15 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_41095 3d0e3ffbd80274a5c93d12e63c7670e9 677 Pfam PF01266 FAD dependent oxidoreductase 1 260 1.8E-29 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RAM_41095 3d0e3ffbd80274a5c93d12e63c7670e9 677 Gene3D G3DSA:3.50.50.60 1 324 8.2E-72 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_41095 3d0e3ffbd80274a5c93d12e63c7670e9 677 SUPERFAMILY SSF101790 613 676 1.1E-14 T 13-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal RAM_41095 3d0e3ffbd80274a5c93d12e63c7670e9 677 SUPERFAMILY SSF103025 338 598 5.65E-67 T 13-10-2018 RAM_41095 3d0e3ffbd80274a5c93d12e63c7670e9 677 Gene3D G3DSA:3.30.70.1400 390 597 2.7E-64 T 13-10-2018 RAM_41095 3d0e3ffbd80274a5c93d12e63c7670e9 677 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 590 676 7.6E-17 T 13-10-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RAM_41095 3d0e3ffbd80274a5c93d12e63c7670e9 677 SUPERFAMILY SSF51905 1 330 7.12E-42 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_41095 3d0e3ffbd80274a5c93d12e63c7670e9 677 Gene3D G3DSA:2.40.30.110 604 677 1.1E-20 T 13-10-2018 RAM_41095 3d0e3ffbd80274a5c93d12e63c7670e9 677 Gene3D G3DSA:3.30.9.10 70 273 8.2E-72 T 13-10-2018 RAM_41095 3d0e3ffbd80274a5c93d12e63c7670e9 677 SUPERFAMILY SSF54373 197 252 3.92E-10 T 13-10-2018 RAM_41095 3d0e3ffbd80274a5c93d12e63c7670e9 677 Pfam PF01571 Aminomethyltransferase folate-binding domain 345 581 5.5E-54 T 13-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain RAM_41095 3d0e3ffbd80274a5c93d12e63c7670e9 677 Gene3D G3DSA:3.30.1360.120 359 572 2.7E-64 T 13-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RAM_05780 0c30ea1b4793c8d9d7e954da5c6c0c97 313 Pfam PF04228 Putative neutral zinc metallopeptidase 122 305 3.1E-14 T 13-10-2018 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative RAM_02655 1becbebc6d2a8f7b492f7fc42601cc11 229 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 13 227 7.7E-63 T 13-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 RAM_02655 1becbebc6d2a8f7b492f7fc42601cc11 229 Pfam PF01209 ubiE/COQ5 methyltransferase family 11 227 2.9E-50 T 13-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 RAM_02655 1becbebc6d2a8f7b492f7fc42601cc11 229 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 4 227 31.265 T 13-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 RAM_02655 1becbebc6d2a8f7b492f7fc42601cc11 229 SUPERFAMILY SSF53335 3 228 1.43E-41 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_02655 1becbebc6d2a8f7b492f7fc42601cc11 229 Gene3D G3DSA:3.40.50.150 19 228 1.1E-52 T 13-10-2018 RAM_02655 1becbebc6d2a8f7b492f7fc42601cc11 229 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 135 149 - T 13-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 RAM_30060 4fec632056ee11ff5a1b987e6c452863 208 SMART SM00421 148 205 3.7E-4 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_30060 4fec632056ee11ff5a1b987e6c452863 208 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 202 2.7E-5 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_30060 4fec632056ee11ff5a1b987e6c452863 208 Pfam PF00072 Response regulator receiver domain 3 108 4.0E-13 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_30060 4fec632056ee11ff5a1b987e6c452863 208 SUPERFAMILY SSF46894 133 207 1.26E-10 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_30060 4fec632056ee11ff5a1b987e6c452863 208 SMART SM00448 1 120 1.4E-6 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_30060 4fec632056ee11ff5a1b987e6c452863 208 SUPERFAMILY SSF52172 2 141 4.41E-17 T 13-10-2018 IPR011006 CheY-like superfamily RAM_30060 4fec632056ee11ff5a1b987e6c452863 208 Gene3D G3DSA:3.40.50.12740 1 208 5.7E-36 T 13-10-2018 RAM_21300 bd722bee9a47cc44b880067817679c2e 1106 SUPERFAMILY SSF140453 182 259 1.31E-6 T 13-10-2018 IPR036689 ESAT-6-like superfamily RAM_21300 bd722bee9a47cc44b880067817679c2e 1106 PRINTS PR01228 Eggshell protein signature 527 545 7.3E-6 T 13-10-2018 RAM_21300 bd722bee9a47cc44b880067817679c2e 1106 PRINTS PR01228 Eggshell protein signature 403 414 7.3E-6 T 13-10-2018 RAM_21300 bd722bee9a47cc44b880067817679c2e 1106 PRINTS PR01228 Eggshell protein signature 495 505 7.3E-6 T 13-10-2018 RAM_21300 bd722bee9a47cc44b880067817679c2e 1106 PRINTS PR01228 Eggshell protein signature 470 485 7.3E-6 T 13-10-2018 RAM_21300 bd722bee9a47cc44b880067817679c2e 1106 Pfam PF06013 Proteins of 100 residues with WXG 182 257 1.1E-7 T 13-10-2018 IPR010310 Type VII secretion system ESAT-6-like RAM_21300 bd722bee9a47cc44b880067817679c2e 1106 Gene3D G3DSA:1.10.287.1060 176 267 5.0E-6 T 13-10-2018 RAM_00105 407f2fc51f0296c9720e4ec840fb26a5 125 SUPERFAMILY SSF54593 6 124 4.37E-17 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_00105 407f2fc51f0296c9720e4ec840fb26a5 125 Gene3D G3DSA:3.10.180.10 1 125 4.8E-42 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_31045 ce5826d558841d4fd01b7cb4b8852df5 64 Pfam PF01632 Ribosomal protein L35 2 62 1.6E-20 T 13-10-2018 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_31045 ce5826d558841d4fd01b7cb4b8852df5 64 SUPERFAMILY SSF143034 2 63 7.06E-19 T 13-10-2018 IPR037229 Ribosomal protein L35 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_31045 ce5826d558841d4fd01b7cb4b8852df5 64 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 64 15.988 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RAM_31045 ce5826d558841d4fd01b7cb4b8852df5 64 PRINTS PR00064 Ribosomal protein L35 signature 21 35 4.1E-13 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RAM_31045 ce5826d558841d4fd01b7cb4b8852df5 64 PRINTS PR00064 Ribosomal protein L35 signature 3 20 4.1E-13 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RAM_31045 ce5826d558841d4fd01b7cb4b8852df5 64 PRINTS PR00064 Ribosomal protein L35 signature 36 54 4.1E-13 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RAM_31045 ce5826d558841d4fd01b7cb4b8852df5 64 Gene3D G3DSA:2.40.50.530 1 63 4.1E-20 T 13-10-2018 RAM_31045 ce5826d558841d4fd01b7cb4b8852df5 64 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 62 2.7E-19 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RAM_17215 4854f2829ef02b951c81fa00d88ddce4 381 SUPERFAMILY SSF56645 6 241 1.96E-65 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_17215 4854f2829ef02b951c81fa00d88ddce4 381 SUPERFAMILY SSF47203 230 375 3.62E-18 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_17215 4854f2829ef02b951c81fa00d88ddce4 381 Gene3D G3DSA:1.10.540.10 2 118 4.7E-26 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_17215 4854f2829ef02b951c81fa00d88ddce4 381 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 124 217 1.2E-23 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RAM_17215 4854f2829ef02b951c81fa00d88ddce4 381 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 5 119 3.4E-18 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_17215 4854f2829ef02b951c81fa00d88ddce4 381 Gene3D G3DSA:1.20.140.10 235 380 2.4E-27 T 13-10-2018 RAM_17215 4854f2829ef02b951c81fa00d88ddce4 381 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 230 373 5.8E-21 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_17215 4854f2829ef02b951c81fa00d88ddce4 381 Gene3D G3DSA:2.40.110.10 124 234 1.6E-35 T 13-10-2018 RAM_39915 8a3ba20b9977dd5fd434666edd214ca5 424 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 8 407 4.1E-97 T 13-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 RAM_39915 8a3ba20b9977dd5fd434666edd214ca5 424 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 3 416 2.6E-159 T 13-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RAM_39915 8a3ba20b9977dd5fd434666edd214ca5 424 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 2 417 38.735 T 13-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RAM_39915 8a3ba20b9977dd5fd434666edd214ca5 424 Gene3D G3DSA:3.65.10.10 21 230 2.1E-150 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 RAM_39915 8a3ba20b9977dd5fd434666edd214ca5 424 SUPERFAMILY SSF55205 4 417 1.8E-125 T 13-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 RAM_39915 8a3ba20b9977dd5fd434666edd214ca5 424 Gene3D G3DSA:3.65.10.10 7 415 2.1E-150 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 RAM_00815 937fc19302d389e49ab978564a883bfa 195 Pfam PF01169 Uncharacterized protein family UPF0016 112 186 1.6E-18 T 13-10-2018 IPR001727 Gdt1 family RAM_00815 937fc19302d389e49ab978564a883bfa 195 Pfam PF01169 Uncharacterized protein family UPF0016 6 75 3.5E-14 T 13-10-2018 IPR001727 Gdt1 family RAM_14250 fe5d60a74d83772d8848c3f362e5168c 259 TIGRFAM TIGR01198 pgl: 6-phosphogluconolactonase 8 250 8.4E-73 T 13-10-2018 IPR005900 6-phosphogluconolactonase, DevB-type GO:0005975|GO:0006098|GO:0017057 KEGG: 00030+3.1.1.31 RAM_14250 fe5d60a74d83772d8848c3f362e5168c 259 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 11 240 1.1E-72 T 13-10-2018 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 RAM_14250 fe5d60a74d83772d8848c3f362e5168c 259 Gene3D G3DSA:3.40.50.1360 1 250 1.4E-88 T 13-10-2018 RAM_14250 fe5d60a74d83772d8848c3f362e5168c 259 SUPERFAMILY SSF100950 5 252 2.57E-64 T 13-10-2018 IPR037171 NagB/RpiA transferase-like RAM_35280 8cf67ddcf7596fde221a9f4b94e24c41 232 Pfam PF01638 HxlR-like helix-turn-helix 21 108 1.6E-21 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type RAM_35280 8cf67ddcf7596fde221a9f4b94e24c41 232 Gene3D G3DSA:1.10.10.10 5 125 7.8E-32 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_35280 8cf67ddcf7596fde221a9f4b94e24c41 232 SUPERFAMILY SSF46785 8 120 3.0E-25 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_35280 8cf67ddcf7596fde221a9f4b94e24c41 232 Gene3D G3DSA:3.30.1050.10 127 219 4.0E-8 T 13-10-2018 IPR036527 SCP2 sterol-binding domain superfamily RAM_35280 8cf67ddcf7596fde221a9f4b94e24c41 232 SUPERFAMILY SSF55718 126 217 1.82E-8 T 13-10-2018 IPR036527 SCP2 sterol-binding domain superfamily RAM_13190 1a99a83fabda93b2908d11a37ac10fb8 660 Hamap MF_02124 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase [glgE]. 1 656 44.027 T 13-10-2018 IPR026585 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase GO:0016757 KEGG: 00500+2.4.99.16|MetaCyc: PWY-7900 RAM_13190 1a99a83fabda93b2908d11a37ac10fb8 660 SMART SM00642 200 535 2.1E-4 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RAM_13190 1a99a83fabda93b2908d11a37ac10fb8 660 Gene3D G3DSA:2.60.40.10 4 194 2.1E-56 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_13190 1a99a83fabda93b2908d11a37ac10fb8 660 SUPERFAMILY SSF51445 193 561 9.27E-83 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_13190 1a99a83fabda93b2908d11a37ac10fb8 660 Pfam PF11896 Domain of unknown function (DUF3416) 3 194 4.9E-58 T 13-10-2018 IPR021828 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase, domain N/S GO:0004553 KEGG: 00500+2.4.99.16|MetaCyc: PWY-7900 RAM_13190 1a99a83fabda93b2908d11a37ac10fb8 660 Pfam PF00128 Alpha amylase, catalytic domain 230 315 8.4E-5 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RAM_13190 1a99a83fabda93b2908d11a37ac10fb8 660 Gene3D G3DSA:1.20.58.280 94 175 2.1E-56 T 13-10-2018 RAM_13190 1a99a83fabda93b2908d11a37ac10fb8 660 Gene3D G3DSA:2.60.40.1180 566 659 8.9E-33 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta RAM_13190 1a99a83fabda93b2908d11a37ac10fb8 660 Gene3D G3DSA:3.20.20.80 195 565 4.0E-162 T 13-10-2018 RAM_31920 87c719149957415e90de9caacda10356 261 SMART SM01012 195 250 2.3E-22 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 RAM_31920 87c719149957415e90de9caacda10356 261 Pfam PF03861 ANTAR domain 197 248 5.0E-20 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 RAM_31920 87c719149957415e90de9caacda10356 261 SUPERFAMILY SSF55781 42 191 7.41E-16 T 13-10-2018 RAM_31920 87c719149957415e90de9caacda10356 261 Gene3D G3DSA:3.30.450.40 24 197 9.5E-19 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_31920 87c719149957415e90de9caacda10356 261 PIRSF PIRSF036625 8 257 2.0E-57 T 13-10-2018 IPR012074 GAF-ANTAR transcription anti-termination regulator, putative RAM_31920 87c719149957415e90de9caacda10356 261 Pfam PF13185 GAF domain 40 183 5.1E-11 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_31920 87c719149957415e90de9caacda10356 261 SMART SM00065 40 193 8.7E-4 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_31920 87c719149957415e90de9caacda10356 261 Gene3D G3DSA:1.10.10.10 198 255 4.3E-11 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_31920 87c719149957415e90de9caacda10356 261 SUPERFAMILY SSF52172 175 249 1.14E-9 T 13-10-2018 IPR011006 CheY-like superfamily RAM_18860 c3c336522d0b7ad3b15ebbcd81b393c3 223 Pfam PF14246 AefR-like transcriptional repressor, C-terminal region 149 203 6.3E-18 T 13-10-2018 IPR039536 Transcriptional regulator TetR, C-terminal, Proteobacteria type RAM_18860 c3c336522d0b7ad3b15ebbcd81b393c3 223 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 41 64 4.8E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_18860 c3c336522d0b7ad3b15ebbcd81b393c3 223 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 20 33 4.8E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_18860 c3c336522d0b7ad3b15ebbcd81b393c3 223 Gene3D G3DSA:1.10.10.60 8 64 7.7E-18 T 13-10-2018 RAM_18860 c3c336522d0b7ad3b15ebbcd81b393c3 223 SUPERFAMILY SSF46689 8 74 1.45E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_18860 c3c336522d0b7ad3b15ebbcd81b393c3 223 Gene3D G3DSA:1.10.357.10 67 206 5.2E-29 T 13-10-2018 RAM_18860 c3c336522d0b7ad3b15ebbcd81b393c3 223 SUPERFAMILY SSF48498 83 199 8.36E-11 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_18860 c3c336522d0b7ad3b15ebbcd81b393c3 223 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 66 3.2E-16 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_10180 56f18bde5817d57e39b3edc0d3285380 741 Gene3D G3DSA:3.40.228.10 275 359 1.6E-15 T 13-10-2018 RAM_10180 56f18bde5817d57e39b3edc0d3285380 741 Gene3D G3DSA:3.40.50.740 2 270 1.7E-80 T 13-10-2018 RAM_10180 56f18bde5817d57e39b3edc0d3285380 741 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 4 54 1.4E-7 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_10180 56f18bde5817d57e39b3edc0d3285380 741 Pfam PF01568 Molydopterin dinucleotide binding domain 611 730 1.7E-22 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 RAM_10180 56f18bde5817d57e39b3edc0d3285380 741 Gene3D G3DSA:3.40.50.740 367 548 5.2E-29 T 13-10-2018 RAM_10180 56f18bde5817d57e39b3edc0d3285380 741 SMART SM00926 2 55 1.4E-11 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_10180 56f18bde5817d57e39b3edc0d3285380 741 Gene3D G3DSA:2.40.40.20 583 738 5.4E-41 T 13-10-2018 RAM_10180 56f18bde5817d57e39b3edc0d3285380 741 SUPERFAMILY SSF50692 573 738 2.28E-35 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily RAM_10180 56f18bde5817d57e39b3edc0d3285380 741 Pfam PF00384 Molybdopterin oxidoreductase 58 512 1.1E-50 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_10180 56f18bde5817d57e39b3edc0d3285380 741 SUPERFAMILY SSF53706 4 590 7.72E-151 T 13-10-2018 RAM_35045 9b87945c46bb892e110bcd9547c3117c 558 ProSitePatterns PS00211 ABC transporters family signature. 443 457 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_35045 9b87945c46bb892e110bcd9547c3117c 558 TIGRFAM TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family 3 555 5.2E-265 T 13-10-2018 IPR022374 Energy-dependent translational throttle protein EttA GO:0045900 RAM_35045 9b87945c46bb892e110bcd9547c3117c 558 Pfam PF12848 ABC transporter 227 302 1.7E-13 T 13-10-2018 IPR032781 ABC-transporter extension domain RAM_35045 9b87945c46bb892e110bcd9547c3117c 558 Pfam PF00005 ABC transporter 338 471 2.7E-19 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_35045 9b87945c46bb892e110bcd9547c3117c 558 ProSitePatterns PS00211 ABC transporters family signature. 160 174 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_35045 9b87945c46bb892e110bcd9547c3117c 558 SMART SM00382 346 516 9.1E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_35045 9b87945c46bb892e110bcd9547c3117c 558 SMART SM00382 30 239 1.3E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_35045 9b87945c46bb892e110bcd9547c3117c 558 Pfam PF00005 ABC transporter 21 188 8.9E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_35045 9b87945c46bb892e110bcd9547c3117c 558 SUPERFAMILY SSF52540 8 240 2.39E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_35045 9b87945c46bb892e110bcd9547c3117c 558 SUPERFAMILY SSF52540 307 507 6.61E-43 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_35045 9b87945c46bb892e110bcd9547c3117c 558 Gene3D G3DSA:3.40.50.300 2 282 1.7E-77 T 13-10-2018 RAM_35045 9b87945c46bb892e110bcd9547c3117c 558 Gene3D G3DSA:3.40.50.300 283 557 8.7E-63 T 13-10-2018 RAM_01450 8e0e1c80c6ecfbe5d612af1714bbb114 148 SUPERFAMILY SSF46785 6 130 2.07E-14 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_01450 8e0e1c80c6ecfbe5d612af1714bbb114 148 Pfam PF12802 MarR family 29 79 4.4E-9 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_01450 8e0e1c80c6ecfbe5d612af1714bbb114 148 Gene3D G3DSA:1.10.10.10 1 139 1.5E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_47505 fe1193f74e3d47ad265f2397348cee5f 312 Gene3D G3DSA:3.40.50.300 1 261 5.6E-56 T 13-10-2018 RAM_47505 fe1193f74e3d47ad265f2397348cee5f 312 ProSitePatterns PS00211 ABC transporters family signature. 128 142 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_47505 fe1193f74e3d47ad265f2397348cee5f 312 SMART SM00382 26 204 8.6E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_47505 fe1193f74e3d47ad265f2397348cee5f 312 SUPERFAMILY SSF52540 2 219 4.42E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_47505 fe1193f74e3d47ad265f2397348cee5f 312 Pfam PF00005 ABC transporter 17 156 4.1E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_38015 96eb7ba264adfb376d64f071003a4ad4 332 Gene3D G3DSA:3.40.50.2000 147 313 4.9E-49 T 13-10-2018 RAM_38015 96eb7ba264adfb376d64f071003a4ad4 332 SUPERFAMILY SSF53756 39 330 1.78E-69 T 13-10-2018 RAM_38015 96eb7ba264adfb376d64f071003a4ad4 332 Gene3D G3DSA:3.40.50.2000 3 146 2.8E-12 T 13-10-2018 RAM_38015 96eb7ba264adfb376d64f071003a4ad4 332 Pfam PF13439 Glycosyltransferase Family 4 36 140 2.9E-13 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 RAM_38015 96eb7ba264adfb376d64f071003a4ad4 332 Pfam PF13692 Glycosyl transferases group 1 163 294 2.7E-33 T 13-10-2018 RAM_37515 697c5b97d2032e578ae999a131d89ea2 296 Pfam PF12642 Conjugative transposon protein TcpC 67 285 7.2E-14 T 13-10-2018 IPR024735 Conjugative transposon protein TcpC RAM_25335 70809c73077c9feaaf240b896c1d2de5 259 SUPERFAMILY SSF51430 8 258 1.83E-62 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_25335 70809c73077c9feaaf240b896c1d2de5 259 PRINTS PR00069 Aldo-keto reductase signature 152 181 1.2E-28 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_25335 70809c73077c9feaaf240b896c1d2de5 259 PRINTS PR00069 Aldo-keto reductase signature 37 61 1.2E-28 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_25335 70809c73077c9feaaf240b896c1d2de5 259 PRINTS PR00069 Aldo-keto reductase signature 189 213 1.2E-28 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_25335 70809c73077c9feaaf240b896c1d2de5 259 PRINTS PR00069 Aldo-keto reductase signature 118 135 1.2E-28 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_25335 70809c73077c9feaaf240b896c1d2de5 259 PRINTS PR00069 Aldo-keto reductase signature 89 107 1.2E-28 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_25335 70809c73077c9feaaf240b896c1d2de5 259 Pfam PF00248 Aldo/keto reductase family 25 253 4.7E-23 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain RAM_25335 70809c73077c9feaaf240b896c1d2de5 259 PIRSF PIRSF000097 2 107 3.1E-12 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_25335 70809c73077c9feaaf240b896c1d2de5 259 PIRSF PIRSF000097 104 259 3.4E-39 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_25335 70809c73077c9feaaf240b896c1d2de5 259 Gene3D G3DSA:3.20.20.100 1 259 4.1E-76 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_24165 560c8a17e6e4040552a26d79251db512 273 Pfam PF00486 Transcriptional regulatory protein, C terminal 32 100 8.1E-6 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_24165 560c8a17e6e4040552a26d79251db512 273 SUPERFAMILY SSF46894 20 104 1.79E-9 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_24165 560c8a17e6e4040552a26d79251db512 273 SMART SM01043 113 257 2.5E-41 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_24165 560c8a17e6e4040552a26d79251db512 273 SUPERFAMILY SSF48452 108 266 2.78E-33 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_24165 560c8a17e6e4040552a26d79251db512 273 Gene3D G3DSA:1.25.40.10 111 272 4.7E-45 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_24165 560c8a17e6e4040552a26d79251db512 273 Gene3D G3DSA:1.10.10.10 9 108 3.2E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_24165 560c8a17e6e4040552a26d79251db512 273 Pfam PF03704 Bacterial transcriptional activator domain 113 257 6.5E-39 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_13065 66cc4cd467484ce47267d288164261c4 435 Gene3D G3DSA:3.30.70.360 196 312 1.6E-111 T 13-10-2018 RAM_13065 66cc4cd467484ce47267d288164261c4 435 SUPERFAMILY SSF53187 8 417 1.76E-73 T 13-10-2018 RAM_13065 66cc4cd467484ce47267d288164261c4 435 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 26 377 9.3E-83 T 13-10-2018 IPR017439 Amidohydrolase GO:0016787 RAM_13065 66cc4cd467484ce47267d288164261c4 435 Pfam PF07687 Peptidase dimerisation domain 200 292 1.6E-9 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain RAM_13065 66cc4cd467484ce47267d288164261c4 435 Gene3D G3DSA:3.40.630.10 23 377 1.6E-111 T 13-10-2018 RAM_13065 66cc4cd467484ce47267d288164261c4 435 SUPERFAMILY SSF55031 199 300 1.83E-27 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain RAM_13065 66cc4cd467484ce47267d288164261c4 435 PIRSF PIRSF005962 5 420 4.1E-97 T 13-10-2018 IPR017439 Amidohydrolase GO:0016787 RAM_13065 66cc4cd467484ce47267d288164261c4 435 Pfam PF01546 Peptidase family M20/M25/M40 77 367 1.9E-22 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 RAM_32065 8aa4cbf6d293e8d864b5675ca72b8935 374 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 19 157 8.2E-39 T 13-10-2018 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RAM_32065 8aa4cbf6d293e8d864b5675ca72b8935 374 Gene3D G3DSA:3.40.50.2000 175 356 5.6E-96 T 13-10-2018 RAM_32065 8aa4cbf6d293e8d864b5675ca72b8935 374 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 19 372 30.554 T 13-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RAM_32065 8aa4cbf6d293e8d864b5675ca72b8935 374 SUPERFAMILY SSF53756 19 372 2.69E-96 T 13-10-2018 RAM_32065 8aa4cbf6d293e8d864b5675ca72b8935 374 Gene3D G3DSA:3.40.50.2000 20 362 5.6E-96 T 13-10-2018 RAM_32065 8aa4cbf6d293e8d864b5675ca72b8935 374 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 19 367 7.9E-84 T 13-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RAM_32065 8aa4cbf6d293e8d864b5675ca72b8935 374 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 203 362 5.4E-34 T 13-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 RAM_47355 565a92bb52e9bf45f405c68c944e7231 444 SUPERFAMILY SSF51735 200 441 3.93E-58 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_47355 565a92bb52e9bf45f405c68c944e7231 444 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 205 381 7.5E-6 T 13-10-2018 RAM_47355 565a92bb52e9bf45f405c68c944e7231 444 Gene3D G3DSA:3.40.50.720 24 198 6.3E-51 T 13-10-2018 RAM_47355 565a92bb52e9bf45f405c68c944e7231 444 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 337 365 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_47355 565a92bb52e9bf45f405c68c944e7231 444 Gene3D G3DSA:3.40.50.720 199 443 4.4E-64 T 13-10-2018 RAM_47355 565a92bb52e9bf45f405c68c944e7231 444 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 206 223 3.1E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_47355 565a92bb52e9bf45f405c68c944e7231 444 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 350 369 3.1E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_47355 565a92bb52e9bf45f405c68c944e7231 444 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 371 388 3.1E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_47355 565a92bb52e9bf45f405c68c944e7231 444 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 324 340 3.1E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_47355 565a92bb52e9bf45f405c68c944e7231 444 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 277 288 3.1E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_47355 565a92bb52e9bf45f405c68c944e7231 444 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 404 424 3.1E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_47355 565a92bb52e9bf45f405c68c944e7231 444 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 211 437 1.3E-45 T 13-10-2018 RAM_47355 565a92bb52e9bf45f405c68c944e7231 444 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 330 338 2.2E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_47355 565a92bb52e9bf45f405c68c944e7231 444 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 350 369 2.2E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_47355 565a92bb52e9bf45f405c68c944e7231 444 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 277 288 2.2E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_28715 b4fd316e0f8027941c2eaa4c96b7470d 224 Pfam PF00106 short chain dehydrogenase 3 183 6.1E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_28715 b4fd316e0f8027941c2eaa4c96b7470d 224 SUPERFAMILY SSF51735 3 208 5.68E-29 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_28715 b4fd316e0f8027941c2eaa4c96b7470d 224 Gene3D G3DSA:3.40.50.720 2 219 3.6E-29 T 13-10-2018 RAM_44210 3d1ddf54a92118d73141df8f03bae821 829 Gene3D G3DSA:2.60.40.10 722 825 1.0E-20 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_44210 3d1ddf54a92118d73141df8f03bae821 829 Pfam PF07691 PA14 domain 450 525 1.5E-7 T 13-10-2018 IPR011658 PA14 domain RAM_44210 3d1ddf54a92118d73141df8f03bae821 829 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 57 276 8.3E-48 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_44210 3d1ddf54a92118d73141df8f03bae821 829 Gene3D G3DSA:2.60.120.260 375 550 1.3E-214 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_44210 3d1ddf54a92118d73141df8f03bae821 829 Gene3D G3DSA:3.20.20.300 7 697 1.3E-214 T 13-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 RAM_44210 3d1ddf54a92118d73141df8f03bae821 829 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 311 714 7.3E-60 T 13-10-2018 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 RAM_44210 3d1ddf54a92118d73141df8f03bae821 829 SUPERFAMILY SSF51445 5 289 4.63E-85 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_44210 3d1ddf54a92118d73141df8f03bae821 829 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 210 227 - T 13-10-2018 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 RAM_44210 3d1ddf54a92118d73141df8f03bae821 829 Gene3D G3DSA:3.40.50.1700 291 653 1.3E-214 T 13-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 RAM_44210 3d1ddf54a92118d73141df8f03bae821 829 SMART SM01217 748 814 4.5E-7 T 13-10-2018 IPR026891 Fibronectin type III-like domain RAM_44210 3d1ddf54a92118d73141df8f03bae821 829 PRINTS PR00133 Glycosyl hydrolase family 3 signature 34 50 6.4E-32 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_44210 3d1ddf54a92118d73141df8f03bae821 829 PRINTS PR00133 Glycosyl hydrolase family 3 signature 210 228 6.4E-32 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_44210 3d1ddf54a92118d73141df8f03bae821 829 PRINTS PR00133 Glycosyl hydrolase family 3 signature 109 125 6.4E-32 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_44210 3d1ddf54a92118d73141df8f03bae821 829 PRINTS PR00133 Glycosyl hydrolase family 3 signature 140 156 6.4E-32 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_44210 3d1ddf54a92118d73141df8f03bae821 829 PRINTS PR00133 Glycosyl hydrolase family 3 signature 63 82 6.4E-32 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_44210 3d1ddf54a92118d73141df8f03bae821 829 SUPERFAMILY SSF52279 310 717 3.27E-51 T 13-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 RAM_44210 3d1ddf54a92118d73141df8f03bae821 829 Pfam PF14310 Fibronectin type III-like domain 748 809 2.4E-8 T 13-10-2018 IPR026891 Fibronectin type III-like domain RAM_37895 ed57a45508fc9cdc0f1fb12a96872f3e 285 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 34 271 7.3E-21 T 13-10-2018 IPR013830 SGNH hydrolase-type esterase domain RAM_37895 ed57a45508fc9cdc0f1fb12a96872f3e 285 Gene3D G3DSA:3.40.50.1110 29 282 2.6E-62 T 13-10-2018 IPR036514 SGNH hydrolase superfamily RAM_37895 ed57a45508fc9cdc0f1fb12a96872f3e 285 SUPERFAMILY SSF52266 31 280 4.66E-52 T 13-10-2018 RAM_32955 56e6bfaf464dba55fbc1b762d7394df0 346 Pfam PF01979 Amidohydrolase family 44 343 6.3E-18 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RAM_32955 56e6bfaf464dba55fbc1b762d7394df0 346 Gene3D G3DSA:1.20.58.520 218 287 2.4E-52 T 13-10-2018 RAM_32955 56e6bfaf464dba55fbc1b762d7394df0 346 Gene3D G3DSA:3.40.50.10910 102 217 2.4E-52 T 13-10-2018 RAM_32955 56e6bfaf464dba55fbc1b762d7394df0 346 Gene3D G3DSA:3.30.110.90 48 309 2.4E-52 T 13-10-2018 RAM_32955 56e6bfaf464dba55fbc1b762d7394df0 346 Gene3D G3DSA:2.30.40.10 7 343 2.4E-52 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_32955 56e6bfaf464dba55fbc1b762d7394df0 346 SUPERFAMILY SSF51556 47 308 1.79E-42 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_32955 56e6bfaf464dba55fbc1b762d7394df0 346 SUPERFAMILY SSF51338 2 340 5.64E-11 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_20740 9279f2b6988dce52c7c91366861df4c0 513 Gene3D G3DSA:3.90.660.10 324 438 1.4E-6 T 13-10-2018 RAM_20740 9279f2b6988dce52c7c91366861df4c0 513 Gene3D G3DSA:3.50.50.60 27 118 8.7E-12 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_20740 9279f2b6988dce52c7c91366861df4c0 513 Gene3D G3DSA:3.50.50.60 253 477 1.4E-6 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_20740 9279f2b6988dce52c7c91366861df4c0 513 Pfam PF01593 Flavin containing amine oxidoreductase 39 479 2.1E-36 T 13-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 RAM_20740 9279f2b6988dce52c7c91366861df4c0 513 SUPERFAMILY SSF51905 29 481 4.75E-41 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_35510 d734d573b85cb026e031473309193411 863 Gene3D G3DSA:3.40.50.300 205 355 5.0E-23 T 13-10-2018 RAM_35510 d734d573b85cb026e031473309193411 863 PRINTS PR00364 Disease resistance protein signature 236 251 5.1E-11 T 13-10-2018 RAM_35510 d734d573b85cb026e031473309193411 863 PRINTS PR00364 Disease resistance protein signature 312 326 5.1E-11 T 13-10-2018 RAM_35510 d734d573b85cb026e031473309193411 863 PRINTS PR00364 Disease resistance protein signature 399 413 5.1E-11 T 13-10-2018 RAM_35510 d734d573b85cb026e031473309193411 863 Pfam PF13424 Tetratricopeptide repeat 658 725 3.4E-12 T 13-10-2018 RAM_35510 d734d573b85cb026e031473309193411 863 SMART SM00382 233 391 2.6E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_35510 d734d573b85cb026e031473309193411 863 SUPERFAMILY SSF48452 647 845 1.14E-19 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_35510 d734d573b85cb026e031473309193411 863 SUPERFAMILY SSF52540 212 461 1.57E-26 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_35510 d734d573b85cb026e031473309193411 863 Gene3D G3DSA:1.25.40.10 637 856 3.0E-26 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_35510 d734d573b85cb026e031473309193411 863 Pfam PF00931 NB-ARC domain 226 415 4.5E-14 T 13-10-2018 IPR002182 NB-ARC GO:0043531 Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-6798695|Reactome: R-HSA-6803207|Reactome: R-HSA-8953750 RAM_01120 bc65383e6fa5ed577a673023be5ad027 266 Gene3D G3DSA:3.30.1240.10 81 191 1.6E-58 T 13-10-2018 RAM_01120 bc65383e6fa5ed577a673023be5ad027 266 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 1 77 6.5E-12 T 13-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 RAM_01120 bc65383e6fa5ed577a673023be5ad027 266 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 1 262 1.2E-44 T 13-10-2018 IPR000150 Cof family GO:0016787 RAM_01120 bc65383e6fa5ed577a673023be5ad027 266 Pfam PF08282 haloacid dehalogenase-like hydrolase 2 262 3.2E-54 T 13-10-2018 RAM_01120 bc65383e6fa5ed577a673023be5ad027 266 Gene3D G3DSA:3.40.50.1000 1 263 1.6E-58 T 13-10-2018 IPR023214 HAD superfamily RAM_01120 bc65383e6fa5ed577a673023be5ad027 266 SUPERFAMILY SSF56784 1 266 2.49E-58 T 13-10-2018 IPR036412 HAD-like superfamily RAM_00145 decf5edde86ad256052b8e828477ee24 465 SUPERFAMILY SSF53474 76 462 1.77E-33 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_00145 decf5edde86ad256052b8e828477ee24 465 Pfam PF00561 alpha/beta hydrolase fold 80 245 3.1E-18 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_00145 decf5edde86ad256052b8e828477ee24 465 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 114 125 1.5E-6 T 13-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 RAM_00145 decf5edde86ad256052b8e828477ee24 465 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 187 201 1.5E-6 T 13-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 RAM_00145 decf5edde86ad256052b8e828477ee24 465 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 82 90 1.5E-6 T 13-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 RAM_00145 decf5edde86ad256052b8e828477ee24 465 Pfam PF08386 TAP-like protein 380 463 2.6E-10 T 13-10-2018 IPR013595 Peptidase S33 tripeptidyl aminopeptidase-like, C-terminal RAM_08480 258a07fba93687e43c6d95778e6ca819 726 Gene3D G3DSA:1.10.150.20 537 618 2.9E-28 T 13-10-2018 RAM_08480 258a07fba93687e43c6d95778e6ca819 726 SUPERFAMILY SSF52113 626 700 4.91E-16 T 13-10-2018 IPR036420 BRCT domain superfamily RAM_08480 258a07fba93687e43c6d95778e6ca819 726 Gene3D G3DSA:3.30.470.90 94 342 3.7E-100 T 13-10-2018 RAM_08480 258a07fba93687e43c6d95778e6ca819 726 SMART SM00532 29 474 4.5E-254 T 13-10-2018 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 RAM_08480 258a07fba93687e43c6d95778e6ca819 726 Gene3D G3DSA:1.10.287.610 20 93 2.8E-25 T 13-10-2018 RAM_08480 258a07fba93687e43c6d95778e6ca819 726 SUPERFAMILY SSF56091 28 343 2.52E-113 T 13-10-2018 RAM_08480 258a07fba93687e43c6d95778e6ca819 726 Gene3D G3DSA:2.40.50.140 343 414 2.5E-28 T 13-10-2018 RAM_08480 258a07fba93687e43c6d95778e6ca819 726 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 627 693 1.1E-11 T 13-10-2018 IPR001357 BRCT domain RAM_08480 258a07fba93687e43c6d95778e6ca819 726 Gene3D G3DSA:2.20.70.80 416 455 6.1E-8 T 13-10-2018 RAM_08480 258a07fba93687e43c6d95778e6ca819 726 SUPERFAMILY SSF47781 428 616 6.99E-49 T 13-10-2018 IPR010994 RuvA domain 2-like RAM_08480 258a07fba93687e43c6d95778e6ca819 726 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 347 423 9.1E-30 T 13-10-2018 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 RAM_08480 258a07fba93687e43c6d95778e6ca819 726 Gene3D G3DSA:3.40.50.10190 623 703 2.1E-21 T 13-10-2018 IPR036420 BRCT domain superfamily RAM_08480 258a07fba93687e43c6d95778e6ca819 726 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 138 167 - T 13-10-2018 IPR018239 NAD-dependent DNA ligase, active site RAM_08480 258a07fba93687e43c6d95778e6ca819 726 Hamap MF_01588 DNA ligase [ligA]. 28 698 50.758 T 13-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 RAM_08480 258a07fba93687e43c6d95778e6ca819 726 SUPERFAMILY SSF50249 342 425 4.28E-26 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_08480 258a07fba93687e43c6d95778e6ca819 726 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 432 460 5.1E-9 T 13-10-2018 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 RAM_08480 258a07fba93687e43c6d95778e6ca819 726 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 37 693 1.4E-238 T 13-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 RAM_08480 258a07fba93687e43c6d95778e6ca819 726 SMART SM00292 624 701 3.6E-11 T 13-10-2018 IPR001357 BRCT domain RAM_08480 258a07fba93687e43c6d95778e6ca819 726 Pfam PF12826 Helix-hairpin-helix motif 543 605 2.7E-22 T 13-10-2018 RAM_08480 258a07fba93687e43c6d95778e6ca819 726 Gene3D G3DSA:1.10.150.20 458 536 1.4E-12 T 13-10-2018 RAM_08480 258a07fba93687e43c6d95778e6ca819 726 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 30 343 4.0E-120 T 13-10-2018 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 RAM_08480 258a07fba93687e43c6d95778e6ca819 726 PIRSF PIRSF001604 23 702 3.0E-234 T 13-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 RAM_44235 4ce5e2c07e25ba0d3a196ae5dcb035a6 148 SMART SM00347 29 128 7.3E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_44235 4ce5e2c07e25ba0d3a196ae5dcb035a6 148 Pfam PF12802 MarR family 35 92 2.9E-15 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_44235 4ce5e2c07e25ba0d3a196ae5dcb035a6 148 SUPERFAMILY SSF46785 10 142 6.17E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_44235 4ce5e2c07e25ba0d3a196ae5dcb035a6 148 Gene3D G3DSA:1.10.10.10 1 144 2.1E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_15180 e92e55e327493bc56ff1770a727800ad 399 Gene3D G3DSA:3.30.420.40 89 380 4.2E-66 T 13-10-2018 RAM_15180 e92e55e327493bc56ff1770a727800ad 399 Gene3D G3DSA:3.30.420.40 212 369 4.2E-66 T 13-10-2018 RAM_15180 e92e55e327493bc56ff1770a727800ad 399 Pfam PF00480 ROK family 89 380 2.6E-42 T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 RAM_15180 e92e55e327493bc56ff1770a727800ad 399 Gene3D G3DSA:1.10.10.10 8 81 6.0E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_15180 e92e55e327493bc56ff1770a727800ad 399 Pfam PF12802 MarR family 14 65 7.0E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_15180 e92e55e327493bc56ff1770a727800ad 399 SUPERFAMILY SSF53067 86 387 1.85E-48 T 13-10-2018 RAM_15180 e92e55e327493bc56ff1770a727800ad 399 SUPERFAMILY SSF46785 15 80 5.71E-11 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_27045 0e9ea59164ad796e0d178032fbe192e3 396 Gene3D G3DSA:3.50.50.60 1 385 4.7E-62 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_27045 0e9ea59164ad796e0d178032fbe192e3 396 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 150 165 9.0E-9 T 13-10-2018 RAM_27045 0e9ea59164ad796e0d178032fbe192e3 396 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 3 25 9.0E-9 T 13-10-2018 RAM_27045 0e9ea59164ad796e0d178032fbe192e3 396 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 276 291 9.0E-9 T 13-10-2018 RAM_27045 0e9ea59164ad796e0d178032fbe192e3 396 SUPERFAMILY SSF51905 1 363 6.92E-39 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_27045 0e9ea59164ad796e0d178032fbe192e3 396 Pfam PF01494 FAD binding domain 2 318 4.2E-25 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_44860 add999500146c945a6a5ac187d9b1d94 311 SUPERFAMILY SSF46955 7 114 7.33E-27 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily RAM_44860 add999500146c945a6a5ac187d9b1d94 311 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 43 63 2.4E-10 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_44860 add999500146c945a6a5ac187d9b1d94 311 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 19 32 2.4E-10 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_44860 add999500146c945a6a5ac187d9b1d94 311 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 8 19 2.4E-10 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_44860 add999500146c945a6a5ac187d9b1d94 311 SMART SM00422 7 76 6.0E-25 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_44860 add999500146c945a6a5ac187d9b1d94 311 Pfam PF13411 MerR HTH family regulatory protein 7 74 2.7E-18 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_44860 add999500146c945a6a5ac187d9b1d94 311 Gene3D G3DSA:1.10.1660.10 9 209 3.8E-31 T 13-10-2018 RAM_19940 721a3bc0204598902db80fa3fbe73d13 293 Gene3D G3DSA:1.10.3720.10 29 284 3.7E-66 T 13-10-2018 IPR035906 MetI-like superfamily RAM_19940 721a3bc0204598902db80fa3fbe73d13 293 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 107 285 3.0E-20 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_19940 721a3bc0204598902db80fa3fbe73d13 293 SUPERFAMILY SSF161098 22 293 5.49E-72 T 13-10-2018 IPR035906 MetI-like superfamily RAM_14665 07ba7888aef0540b5d8fc5c7fd511c04 562 Pfam PF07287 Acyclic terpene utilisation family protein AtuA 5 331 1.6E-129 T 13-10-2018 IPR010839 Acyclic terpene utilisation RAM_24600 c856badcb93554229db573d4aafcdb2c 144 SUPERFAMILY SSF160719 23 130 2.09E-35 T 13-10-2018 RAM_24600 c856badcb93554229db573d4aafcdb2c 144 Pfam PF04965 Gene 25-like lysozyme 29 117 1.8E-25 T 13-10-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD RAM_24600 c856badcb93554229db573d4aafcdb2c 144 Gene3D G3DSA:3.10.450.40 1 130 3.2E-48 T 13-10-2018 RAM_03215 eb3c3695d65097a7a9c64b243bb0089a 232 Pfam PF13419 Haloacid dehalogenase-like hydrolase 23 195 6.1E-31 T 13-10-2018 RAM_03215 eb3c3695d65097a7a9c64b243bb0089a 232 Gene3D G3DSA:3.40.50.1000 23 215 5.5E-46 T 13-10-2018 IPR023214 HAD superfamily RAM_03215 eb3c3695d65097a7a9c64b243bb0089a 232 Gene3D G3DSA:1.10.150.240 35 93 5.5E-46 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 RAM_03215 eb3c3695d65097a7a9c64b243bb0089a 232 SUPERFAMILY SSF56784 22 226 2.85E-50 T 13-10-2018 IPR036412 HAD-like superfamily RAM_03215 eb3c3695d65097a7a9c64b243bb0089a 232 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 109 122 2.8E-9 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_03215 eb3c3695d65097a7a9c64b243bb0089a 232 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 140 156 2.8E-9 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_03215 eb3c3695d65097a7a9c64b243bb0089a 232 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 20 31 2.8E-9 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_03215 eb3c3695d65097a7a9c64b243bb0089a 232 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 158 178 2.8E-9 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_03215 eb3c3695d65097a7a9c64b243bb0089a 232 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 109 190 1.5E-9 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_03215 eb3c3695d65097a7a9c64b243bb0089a 232 TIGRFAM TIGR01454 AHBA_synth_RP: AHBA synthesis associated protein 23 228 7.4E-120 T 13-10-2018 IPR006351 3-amino-5-hydroxybenzoic acid synthesis-related RAM_03215 eb3c3695d65097a7a9c64b243bb0089a 232 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 92 191 2.3E-9 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_33715 bfbb7feaaa650b1207935615e10e0259 287 SUPERFAMILY SSF51735 4 161 2.77E-42 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_33715 bfbb7feaaa650b1207935615e10e0259 287 PIRSF PIRSF000103 1 287 3.6E-77 T 13-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 RAM_33715 bfbb7feaaa650b1207935615e10e0259 287 Gene3D G3DSA:3.40.50.720 1 159 9.6E-47 T 13-10-2018 RAM_33715 bfbb7feaaa650b1207935615e10e0259 287 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 6 160 3.5E-40 T 13-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 RAM_33715 bfbb7feaaa650b1207935615e10e0259 287 Gene3D G3DSA:1.10.1040.10 160 286 4.7E-27 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RAM_33715 bfbb7feaaa650b1207935615e10e0259 287 SUPERFAMILY SSF48179 163 284 1.04E-23 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RAM_33715 bfbb7feaaa650b1207935615e10e0259 287 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 164 282 1.4E-16 T 13-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 RAM_07225 63d2bd59fa7aa5cd4df6b0bf61a8fc34 313 Gene3D G3DSA:3.40.50.720 131 259 1.1E-72 T 13-10-2018 RAM_07225 63d2bd59fa7aa5cd4df6b0bf61a8fc34 313 Gene3D G3DSA:3.90.180.10 12 301 1.1E-72 T 13-10-2018 RAM_07225 63d2bd59fa7aa5cd4df6b0bf61a8fc34 313 SUPERFAMILY SSF50129 4 153 5.02E-39 T 13-10-2018 IPR011032 GroES-like superfamily RAM_07225 63d2bd59fa7aa5cd4df6b0bf61a8fc34 313 Pfam PF13602 Zinc-binding dehydrogenase 199 310 3.0E-11 T 13-10-2018 RAM_07225 63d2bd59fa7aa5cd4df6b0bf61a8fc34 313 SMART SM00829 13 310 2.7E-14 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_07225 63d2bd59fa7aa5cd4df6b0bf61a8fc34 313 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 30 91 8.8E-10 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_07225 63d2bd59fa7aa5cd4df6b0bf61a8fc34 313 SUPERFAMILY SSF51735 120 241 1.44E-24 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_21700 0413bcd9aeef1a8741c46c98b126548b 274 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 21 255 4.4E-55 T 13-10-2018 RAM_21700 0413bcd9aeef1a8741c46c98b126548b 274 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 91 102 3.3E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_21700 0413bcd9aeef1a8741c46c98b126548b 274 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 145 153 3.3E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_21700 0413bcd9aeef1a8741c46c98b126548b 274 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 165 184 3.3E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_21700 0413bcd9aeef1a8741c46c98b126548b 274 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 152 180 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_21700 0413bcd9aeef1a8741c46c98b126548b 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 219 239 1.1E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_21700 0413bcd9aeef1a8741c46c98b126548b 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 16 33 1.1E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_21700 0413bcd9aeef1a8741c46c98b126548b 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 186 203 1.1E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_21700 0413bcd9aeef1a8741c46c98b126548b 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 139 155 1.1E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_21700 0413bcd9aeef1a8741c46c98b126548b 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 91 102 1.1E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_21700 0413bcd9aeef1a8741c46c98b126548b 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 184 1.1E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_21700 0413bcd9aeef1a8741c46c98b126548b 274 SUPERFAMILY SSF51735 15 259 1.64E-75 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_21700 0413bcd9aeef1a8741c46c98b126548b 274 Gene3D G3DSA:3.40.50.720 15 257 8.8E-75 T 13-10-2018 RAM_17390 fa4f9f2910a906dd3a0077d44984a616 390 Gene3D G3DSA:1.10.10.10 1 66 4.0E-13 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_17390 fa4f9f2910a906dd3a0077d44984a616 390 SUPERFAMILY SSF53067 72 371 3.52E-47 T 13-10-2018 RAM_17390 fa4f9f2910a906dd3a0077d44984a616 390 Pfam PF12802 MarR family 4 54 6.6E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_17390 fa4f9f2910a906dd3a0077d44984a616 390 SUPERFAMILY SSF46785 1 64 5.54E-10 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_17390 fa4f9f2910a906dd3a0077d44984a616 390 Gene3D G3DSA:3.30.420.40 69 204 1.6E-28 T 13-10-2018 RAM_17390 fa4f9f2910a906dd3a0077d44984a616 390 Gene3D G3DSA:3.30.420.40 205 352 3.5E-34 T 13-10-2018 RAM_17390 fa4f9f2910a906dd3a0077d44984a616 390 Pfam PF00480 ROK family 75 369 6.5E-46 T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 RAM_39335 5e8f16f693f8333763285d1fc809f0f1 461 Gene3D G3DSA:1.20.1250.20 258 456 4.0E-19 T 13-10-2018 RAM_39335 5e8f16f693f8333763285d1fc809f0f1 461 Gene3D G3DSA:1.20.1720.10 20 226 2.0E-38 T 13-10-2018 RAM_39335 5e8f16f693f8333763285d1fc809f0f1 461 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 19 419 2.9E-69 T 13-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 RAM_39335 5e8f16f693f8333763285d1fc809f0f1 461 SUPERFAMILY SSF103473 7 453 1.44E-56 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_39335 5e8f16f693f8333763285d1fc809f0f1 461 PRINTS PR01036 Tetracycline resistance protein TetB signature 112 132 2.5E-5 T 13-10-2018 RAM_39335 5e8f16f693f8333763285d1fc809f0f1 461 PRINTS PR01036 Tetracycline resistance protein TetB signature 207 225 2.5E-5 T 13-10-2018 RAM_39335 5e8f16f693f8333763285d1fc809f0f1 461 PRINTS PR01036 Tetracycline resistance protein TetB signature 303 327 2.5E-5 T 13-10-2018 RAM_39335 5e8f16f693f8333763285d1fc809f0f1 461 PRINTS PR01036 Tetracycline resistance protein TetB signature 142 166 2.5E-5 T 13-10-2018 RAM_39335 5e8f16f693f8333763285d1fc809f0f1 461 Pfam PF07690 Major Facilitator Superfamily 23 410 4.2E-46 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_33660 24e4fa5d8188e27253deb8a925ac1ced 311 SUPERFAMILY SSF51735 113 262 5.62E-40 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_33660 24e4fa5d8188e27253deb8a925ac1ced 311 SUPERFAMILY SSF50129 3 146 1.16E-36 T 13-10-2018 IPR011032 GroES-like superfamily RAM_33660 24e4fa5d8188e27253deb8a925ac1ced 311 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 24 95 9.1E-10 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_33660 24e4fa5d8188e27253deb8a925ac1ced 311 Gene3D G3DSA:3.40.50.720 121 278 3.4E-92 T 13-10-2018 RAM_33660 24e4fa5d8188e27253deb8a925ac1ced 311 Gene3D G3DSA:3.90.180.10 5 305 3.4E-92 T 13-10-2018 RAM_33660 24e4fa5d8188e27253deb8a925ac1ced 311 Pfam PF13602 Zinc-binding dehydrogenase 187 308 1.9E-20 T 13-10-2018 RAM_33660 24e4fa5d8188e27253deb8a925ac1ced 311 SMART SM00829 7 308 2.4E-23 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_45555 27b27f6beab1a7336b3362bba5fe9150 396 Pfam PF01139 tRNA-splicing ligase RtcB 28 396 3.8E-131 T 13-10-2018 IPR001233 tRNA-splicing ligase, RtcB GO:0006396|GO:0008452 Reactome: R-HSA-6784531 RAM_45555 27b27f6beab1a7336b3362bba5fe9150 396 SUPERFAMILY SSF103365 9 396 4.45E-131 T 13-10-2018 IPR036025 tRNA-splicing ligase RtcB-like superfamily GO:0006396|GO:0008452 Reactome: R-HSA-6784531 RAM_45555 27b27f6beab1a7336b3362bba5fe9150 396 Gene3D G3DSA:3.90.1860.10 2 396 5.9E-116 T 13-10-2018 IPR036025 tRNA-splicing ligase RtcB-like superfamily GO:0006396|GO:0008452 Reactome: R-HSA-6784531 RAM_33075 95f2ea7af2972d76ce3bc7c0343e8e65 367 SUPERFAMILY SSF52266 161 361 3.21E-35 T 13-10-2018 RAM_33075 95f2ea7af2972d76ce3bc7c0343e8e65 367 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 163 355 2.8E-19 T 13-10-2018 IPR013830 SGNH hydrolase-type esterase domain RAM_33075 95f2ea7af2972d76ce3bc7c0343e8e65 367 Gene3D G3DSA:3.40.50.1110 152 365 8.9E-28 T 13-10-2018 IPR036514 SGNH hydrolase superfamily RAM_32190 8e0ef0e315e69795529f013d7e2aaa21 186 Pfam PF13302 Acetyltransferase (GNAT) domain 12 154 2.9E-31 T 13-10-2018 IPR000182 GNAT domain RAM_32190 8e0ef0e315e69795529f013d7e2aaa21 186 Gene3D G3DSA:3.40.630.30 4 186 2.4E-50 T 13-10-2018 RAM_32190 8e0ef0e315e69795529f013d7e2aaa21 186 SUPERFAMILY SSF55729 6 178 1.51E-44 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_47780 25812afe00bd65467318ef54d25f6a54 289 SUPERFAMILY SSF53613 1 285 7.17E-82 T 13-10-2018 IPR029056 Ribokinase-like RAM_47780 25812afe00bd65467318ef54d25f6a54 289 PRINTS PR00990 Ribokinase signature 206 217 2.0E-30 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 RAM_47780 25812afe00bd65467318ef54d25f6a54 289 PRINTS PR00990 Ribokinase signature 170 185 2.0E-30 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 RAM_47780 25812afe00bd65467318ef54d25f6a54 289 PRINTS PR00990 Ribokinase signature 105 118 2.0E-30 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 RAM_47780 25812afe00bd65467318ef54d25f6a54 289 PRINTS PR00990 Ribokinase signature 34 53 2.0E-30 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 RAM_47780 25812afe00bd65467318ef54d25f6a54 289 PRINTS PR00990 Ribokinase signature 7 28 2.0E-30 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 RAM_47780 25812afe00bd65467318ef54d25f6a54 289 Pfam PF00294 pfkB family carbohydrate kinase 4 283 1.4E-66 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB RAM_47780 25812afe00bd65467318ef54d25f6a54 289 Gene3D G3DSA:3.40.1190.20 1 289 2.5E-97 T 13-10-2018 IPR029056 Ribokinase-like RAM_47780 25812afe00bd65467318ef54d25f6a54 289 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 235 248 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RAM_47780 25812afe00bd65467318ef54d25f6a54 289 Hamap MF_01987 Ribokinase [rbsK]. 3 289 24.407 T 13-10-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 RAM_31835 1392f4c02d8c1d3b795450892d5ff339 164 SUPERFAMILY SSF88659 100 158 3.18E-12 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_31835 1392f4c02d8c1d3b795450892d5ff339 164 Gene3D G3DSA:1.10.1740.10 1 75 9.7E-10 T 13-10-2018 RAM_31835 1392f4c02d8c1d3b795450892d5ff339 164 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 3 157 8.7E-15 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_31835 1392f4c02d8c1d3b795450892d5ff339 164 Pfam PF08281 Sigma-70, region 4 103 152 1.7E-11 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_31835 1392f4c02d8c1d3b795450892d5ff339 164 SUPERFAMILY SSF88946 3 92 5.49E-13 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_31835 1392f4c02d8c1d3b795450892d5ff339 164 Gene3D G3DSA:1.10.10.10 76 161 5.3E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_31835 1392f4c02d8c1d3b795450892d5ff339 164 Pfam PF04542 Sigma-70 region 2 11 70 5.2E-6 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_30150 505070f93285abf7f07a7e524f78fbe2 353 SUPERFAMILY SSF52540 68 302 1.14E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_30150 505070f93285abf7f07a7e524f78fbe2 353 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 347 148.226 T 13-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 RAM_30150 505070f93285abf7f07a7e524f78fbe2 353 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 91 294 3.2E-20 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RAM_30150 505070f93285abf7f07a7e524f78fbe2 353 Gene3D G3DSA:2.40.50.140 1 64 3.8E-9 T 13-10-2018 RAM_30150 505070f93285abf7f07a7e524f78fbe2 353 Gene3D G3DSA:3.40.50.300 66 345 4.8E-106 T 13-10-2018 RAM_30150 505070f93285abf7f07a7e524f78fbe2 353 Pfam PF07497 Rho termination factor, RNA-binding domain 4 50 5.3E-7 T 13-10-2018 IPR011113 Rho termination factor, RNA-binding domain GO:0003723|GO:0006353 RAM_30150 505070f93285abf7f07a7e524f78fbe2 353 SMART SM00382 101 258 1.5E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_02725 faa0259ef7549b15d679bb27c1d7e83a 516 Pfam PF00361 Proton-conducting membrane transporter 131 426 4.7E-58 T 13-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_02725 faa0259ef7549b15d679bb27c1d7e83a 516 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 6 511 4.9E-160 T 13-10-2018 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_02725 faa0259ef7549b15d679bb27c1d7e83a 516 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 167 191 2.2E-28 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_02725 faa0259ef7549b15d679bb27c1d7e83a 516 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 137 156 2.2E-28 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_02725 faa0259ef7549b15d679bb27c1d7e83a 516 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 332 351 2.2E-28 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_02725 faa0259ef7549b15d679bb27c1d7e83a 516 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 384 410 2.2E-28 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_02725 faa0259ef7549b15d679bb27c1d7e83a 516 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 244 268 2.2E-28 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_00695 fac860fa918ebaf2c11bfc649dc64b42 119 SUPERFAMILY SSF52821 8 109 1.27E-33 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily RAM_00695 fac860fa918ebaf2c11bfc649dc64b42 119 SMART SM00450 10 106 1.3E-22 T 13-10-2018 IPR001763 Rhodanese-like domain RAM_00695 fac860fa918ebaf2c11bfc649dc64b42 119 Pfam PF00581 Rhodanese-like domain 15 102 7.0E-16 T 13-10-2018 IPR001763 Rhodanese-like domain RAM_00695 fac860fa918ebaf2c11bfc649dc64b42 119 Gene3D G3DSA:3.40.250.10 13 116 3.3E-30 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily RAM_26930 32647a1a9664730d6f827992f7e28e40 192 SUPERFAMILY SSF52540 13 185 3.39E-9 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_26930 32647a1a9664730d6f827992f7e28e40 192 Gene3D G3DSA:3.40.50.300 10 182 2.6E-6 T 13-10-2018 RAM_33730 3ec3df6360f7fb335d70ce114f04d04a 764 Pfam PF09364 XFP N-terminal domain 6 362 5.6E-126 T 13-10-2018 IPR018970 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, N-terminal RAM_33730 3ec3df6360f7fb335d70ce114f04d04a 764 ProSitePatterns PS60003 Phosphoketolase signature 2. 149 167 - T 13-10-2018 IPR019789 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, thiamine diphosphate binding site GO:0005975|GO:0016832 RAM_33730 3ec3df6360f7fb335d70ce114f04d04a 764 Pfam PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase 377 551 2.0E-77 T 13-10-2018 IPR005593 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase GO:0005975|GO:0016832 RAM_33730 3ec3df6360f7fb335d70ce114f04d04a 764 SUPERFAMILY SSF52518 354 568 7.46E-23 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_33730 3ec3df6360f7fb335d70ce114f04d04a 764 SUPERFAMILY SSF52518 6 346 1.26E-56 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_33730 3ec3df6360f7fb335d70ce114f04d04a 764 Pfam PF09363 XFP C-terminal domain 562 762 7.7E-75 T 13-10-2018 IPR018969 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, C-terminal GO:0005975|GO:0016832 RAM_33730 3ec3df6360f7fb335d70ce114f04d04a 764 PIRSF PIRSF017245 1 764 5.9E-283 T 13-10-2018 IPR005593 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase GO:0005975|GO:0016832 RAM_33730 3ec3df6360f7fb335d70ce114f04d04a 764 Gene3D G3DSA:3.40.50.970 2 364 1.6E-137 T 13-10-2018 RAM_33730 3ec3df6360f7fb335d70ce114f04d04a 764 Gene3D G3DSA:3.40.50.920 582 764 2.0E-63 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RAM_33730 3ec3df6360f7fb335d70ce114f04d04a 764 ProSitePatterns PS60002 Phosphoketolase signature 1. 136 142 - T 13-10-2018 IPR019790 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, conserved site GO:0005975|GO:0016832 RAM_33730 3ec3df6360f7fb335d70ce114f04d04a 764 Gene3D G3DSA:3.40.50.970 365 581 1.7E-93 T 13-10-2018 RAM_28815 79ac8a8fe94c738211d4ee6d8a060da8 925 SMART SM00421 846 903 6.1E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_28815 79ac8a8fe94c738211d4ee6d8a060da8 925 Gene3D G3DSA:1.10.10.10 797 913 4.0E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_28815 79ac8a8fe94c738211d4ee6d8a060da8 925 SUPERFAMILY SSF52540 3 222 6.97E-9 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_28815 79ac8a8fe94c738211d4ee6d8a060da8 925 SUPERFAMILY SSF46894 837 899 7.82E-13 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_28815 79ac8a8fe94c738211d4ee6d8a060da8 925 Pfam PF00196 Bacterial regulatory proteins, luxR family 848 896 3.4E-10 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_28815 79ac8a8fe94c738211d4ee6d8a060da8 925 ProSitePatterns PS00622 LuxR-type HTH domain signature. 863 890 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_28815 79ac8a8fe94c738211d4ee6d8a060da8 925 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 879 891 6.2E-7 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_28815 79ac8a8fe94c738211d4ee6d8a060da8 925 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 863 879 6.2E-7 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_28815 79ac8a8fe94c738211d4ee6d8a060da8 925 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 849 863 6.2E-7 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_28815 79ac8a8fe94c738211d4ee6d8a060da8 925 Gene3D G3DSA:3.40.50.300 1 153 3.3E-7 T 13-10-2018 RAM_28815 79ac8a8fe94c738211d4ee6d8a060da8 925 Pfam PF13191 AAA ATPase domain 3 153 2.7E-15 T 13-10-2018 RAM_35970 5078f7e962717afa5640d5126cd310d3 384 Pfam PF07690 Major Facilitator Superfamily 21 325 2.9E-24 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_35970 5078f7e962717afa5640d5126cd310d3 384 SUPERFAMILY SSF103473 5 380 9.68E-45 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_35970 5078f7e962717afa5640d5126cd310d3 384 Gene3D G3DSA:1.20.1250.20 11 380 3.5E-37 T 13-10-2018 RAM_33285 9208f6a9271deeb8da12fe75de269273 225 SUPERFAMILY SSF46894 149 220 5.78E-21 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_33285 9208f6a9271deeb8da12fe75de269273 225 SMART SM00421 156 213 2.9E-24 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_33285 9208f6a9271deeb8da12fe75de269273 225 Pfam PF00196 Bacterial regulatory proteins, luxR family 158 213 3.0E-16 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_33285 9208f6a9271deeb8da12fe75de269273 225 Pfam PF00072 Response regulator receiver domain 4 115 5.4E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_33285 9208f6a9271deeb8da12fe75de269273 225 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 159 173 3.7E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_33285 9208f6a9271deeb8da12fe75de269273 225 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 173 189 3.7E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_33285 9208f6a9271deeb8da12fe75de269273 225 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 189 201 3.7E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_33285 9208f6a9271deeb8da12fe75de269273 225 Gene3D G3DSA:3.40.50.12740 3 219 8.4E-68 T 13-10-2018 RAM_33285 9208f6a9271deeb8da12fe75de269273 225 ProSitePatterns PS00622 LuxR-type HTH domain signature. 173 200 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_33285 9208f6a9271deeb8da12fe75de269273 225 SUPERFAMILY SSF52172 3 134 5.55E-35 T 13-10-2018 IPR011006 CheY-like superfamily RAM_33285 9208f6a9271deeb8da12fe75de269273 225 SMART SM00448 2 115 7.1E-34 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_02995 a0493b664ee8b0ebeaea6cfb37ff74a2 881 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 440 594 7.9E-14 T 13-10-2018 IPR000160 GGDEF domain RAM_02995 a0493b664ee8b0ebeaea6cfb37ff74a2 881 Pfam PF01590 GAF domain 362 429 2.1E-5 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_02995 a0493b664ee8b0ebeaea6cfb37ff74a2 881 SUPERFAMILY SSF55073 448 594 2.04E-23 T 13-10-2018 IPR029787 Nucleotide cyclase RAM_02995 a0493b664ee8b0ebeaea6cfb37ff74a2 881 Gene3D G3DSA:3.30.70.270 440 602 2.6E-28 T 13-10-2018 RAM_02995 a0493b664ee8b0ebeaea6cfb37ff74a2 881 Gene3D G3DSA:3.30.450.40 304 439 8.3E-14 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_02995 a0493b664ee8b0ebeaea6cfb37ff74a2 881 SUPERFAMILY SSF55781 305 441 1.22E-11 T 13-10-2018 RAM_02995 a0493b664ee8b0ebeaea6cfb37ff74a2 881 SMART SM00267 432 601 2.4E-21 T 13-10-2018 IPR000160 GGDEF domain RAM_02995 a0493b664ee8b0ebeaea6cfb37ff74a2 881 SMART SM00065 300 440 2.9E-7 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_02995 a0493b664ee8b0ebeaea6cfb37ff74a2 881 Gene3D G3DSA:3.20.20.450 612 865 5.5E-92 T 13-10-2018 IPR035919 EAL domain superfamily RAM_02995 a0493b664ee8b0ebeaea6cfb37ff74a2 881 SUPERFAMILY SSF141868 618 864 3.4E-83 T 13-10-2018 IPR035919 EAL domain superfamily RAM_02995 a0493b664ee8b0ebeaea6cfb37ff74a2 881 Pfam PF00990 Diguanylate cyclase, GGDEF domain 443 593 3.7E-17 T 13-10-2018 IPR000160 GGDEF domain RAM_02995 a0493b664ee8b0ebeaea6cfb37ff74a2 881 Pfam PF00563 EAL domain 618 851 1.3E-69 T 13-10-2018 IPR001633 EAL domain RAM_02995 a0493b664ee8b0ebeaea6cfb37ff74a2 881 SMART SM00052 611 856 1.6E-107 T 13-10-2018 IPR001633 EAL domain RAM_15410 cb8f685bd749e3d7cf35202a40c9d267 146 SUPERFAMILY SSF46785 3 137 1.8E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_15410 cb8f685bd749e3d7cf35202a40c9d267 146 Gene3D G3DSA:1.10.10.10 2 140 2.2E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_15410 cb8f685bd749e3d7cf35202a40c9d267 146 Pfam PF12802 MarR family 32 89 4.1E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_15410 cb8f685bd749e3d7cf35202a40c9d267 146 SMART SM00347 25 125 1.4E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_26025 f9771fce511b3c14394bb326d8587605 435 Gene3D G3DSA:1.10.630.10 44 427 4.0E-37 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_26025 f9771fce511b3c14394bb326d8587605 435 SUPERFAMILY SSF48264 54 430 7.73E-39 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_26025 f9771fce511b3c14394bb326d8587605 435 Pfam PF00067 Cytochrome P450 269 410 8.6E-17 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_17255 6aed8129dea8265bfddb5c4b3a15010f 218 Pfam PF07729 FCD domain 89 206 3.6E-18 T 13-10-2018 IPR011711 GntR, C-terminal RAM_17255 6aed8129dea8265bfddb5c4b3a15010f 218 SMART SM00895 85 208 4.0E-8 T 13-10-2018 IPR011711 GntR, C-terminal RAM_17255 6aed8129dea8265bfddb5c4b3a15010f 218 Gene3D G3DSA:1.20.120.530 79 216 6.4E-23 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_17255 6aed8129dea8265bfddb5c4b3a15010f 218 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 75 1.0E-17 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_17255 6aed8129dea8265bfddb5c4b3a15010f 218 SMART SM00345 17 75 3.4E-17 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_17255 6aed8129dea8265bfddb5c4b3a15010f 218 SUPERFAMILY SSF46785 9 98 3.78E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_17255 6aed8129dea8265bfddb5c4b3a15010f 218 SUPERFAMILY SSF48008 81 213 2.88E-21 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_17255 6aed8129dea8265bfddb5c4b3a15010f 218 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 35 49 3.0E-6 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_17255 6aed8129dea8265bfddb5c4b3a15010f 218 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 49 65 3.0E-6 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_17255 6aed8129dea8265bfddb5c4b3a15010f 218 Gene3D G3DSA:1.10.10.10 4 76 4.3E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_17505 d02d3572a51cb991d3dac270794d3e91 181 Pfam PF10400 Virulence activator alpha C-term 85 173 1.2E-20 T 13-10-2018 IPR018309 Transcription regulator PadR, C-terminal RAM_17505 d02d3572a51cb991d3dac270794d3e91 181 Gene3D G3DSA:1.10.10.10 1 80 1.3E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_17505 d02d3572a51cb991d3dac270794d3e91 181 SUPERFAMILY SSF46785 2 174 6.98E-36 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_17505 d02d3572a51cb991d3dac270794d3e91 181 Pfam PF03551 Transcriptional regulator PadR-like family 4 74 2.5E-11 T 13-10-2018 IPR005149 Transcription regulator PadR, N-terminal RAM_32990 1e86c92a74a678cf09fe14d4d3c5c769 184 SUPERFAMILY SSF88659 108 172 4.49E-13 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_32990 1e86c92a74a678cf09fe14d4d3c5c769 184 Pfam PF04542 Sigma-70 region 2 23 86 1.1E-9 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_32990 1e86c92a74a678cf09fe14d4d3c5c769 184 SUPERFAMILY SSF88946 3 95 2.2E-17 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_32990 1e86c92a74a678cf09fe14d4d3c5c769 184 Gene3D G3DSA:1.10.1740.10 1 87 4.2E-18 T 13-10-2018 RAM_32990 1e86c92a74a678cf09fe14d4d3c5c769 184 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 17 172 3.9E-16 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_32990 1e86c92a74a678cf09fe14d4d3c5c769 184 Gene3D G3DSA:1.10.10.10 100 175 6.2E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_32990 1e86c92a74a678cf09fe14d4d3c5c769 184 Pfam PF04545 Sigma-70, region 4 122 171 2.7E-13 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 RAM_41130 7f52f840bb7aa97874f5f1e7a968f197 92 Gene3D G3DSA:1.10.1220.10 1 40 2.6E-6 T 13-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 RAM_41130 7f52f840bb7aa97874f5f1e7a968f197 92 Pfam PF05534 HicB family 4 32 2.4E-7 T 13-10-2018 IPR008651 Uncharacterised protein family HicB RAM_41130 7f52f840bb7aa97874f5f1e7a968f197 92 SUPERFAMILY SSF47598 3 43 4.45E-10 T 13-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 RAM_26000 673ba2030a1bd0c867565efd9e4d36a6 265 SUPERFAMILY SSF51445 60 263 2.88E-60 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_26000 673ba2030a1bd0c867565efd9e4d36a6 265 SMART SM00641 60 169 4.6E-36 T 13-10-2018 IPR018077 Glycoside hydrolase, family 25 subgroup RAM_26000 673ba2030a1bd0c867565efd9e4d36a6 265 Gene3D G3DSA:3.20.20.80 59 265 2.7E-75 T 13-10-2018 RAM_26000 673ba2030a1bd0c867565efd9e4d36a6 265 Pfam PF01183 Glycosyl hydrolases family 25 64 247 1.4E-43 T 13-10-2018 IPR002053 Glycoside hydrolase, family 25 GO:0003796|GO:0009253|GO:0016998 RAM_26000 673ba2030a1bd0c867565efd9e4d36a6 265 ProSitePatterns PS00953 Glycosyl hydrolases family 25 active sites signature. 64 97 - T 13-10-2018 IPR008270 Glycoside hydrolase, family 25, active site GO:0003796|GO:0009253|GO:0016998 RAM_35010 2c379d45e3af1e20cda11d74b63c51cd 127 Pfam PF01152 Bacterial-like globin 6 123 6.6E-35 T 13-10-2018 IPR001486 Truncated hemoglobin GO:0019825 RAM_35010 2c379d45e3af1e20cda11d74b63c51cd 127 Gene3D G3DSA:1.10.490.10 3 126 7.4E-47 T 13-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 RAM_35010 2c379d45e3af1e20cda11d74b63c51cd 127 SUPERFAMILY SSF46458 6 125 6.99E-37 T 13-10-2018 IPR009050 Globin-like superfamily RAM_16020 2ecdd767a02d922bcc02a323a8e1fcab 317 Pfam PF01040 UbiA prenyltransferase family 50 286 1.9E-27 T 13-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 RAM_16020 2ecdd767a02d922bcc02a323a8e1fcab 317 Gene3D G3DSA:1.10.357.140 37 156 2.9E-10 T 13-10-2018 RAM_12805 97815ca22b689f7b1f241169eb105111 378 Gene3D G3DSA:3.30.530.90 152 378 5.6E-102 T 13-10-2018 RAM_12805 97815ca22b689f7b1f241169eb105111 378 SUPERFAMILY SSF50022 9 129 3.14E-29 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RAM_12805 97815ca22b689f7b1f241169eb105111 378 Gene3D G3DSA:2.102.10.10 17 151 5.8E-43 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RAM_12805 97815ca22b689f7b1f241169eb105111 378 Pfam PF00355 Rieske [2Fe-2S] domain 22 104 2.0E-17 T 13-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RAM_12805 97815ca22b689f7b1f241169eb105111 378 SUPERFAMILY SSF55961 125 342 1.04E-28 T 13-10-2018 RAM_01695 d08fa675fc8b5d320574b2880aa89cf0 238 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 190 202 2.8E-6 T 13-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 RAM_01695 d08fa675fc8b5d320574b2880aa89cf0 238 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 60 75 2.8E-6 T 13-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 RAM_01695 d08fa675fc8b5d320574b2880aa89cf0 238 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 107 121 2.8E-6 T 13-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 RAM_01695 d08fa675fc8b5d320574b2880aa89cf0 238 Gene3D G3DSA:2.40.10.10 36 108 1.7E-11 T 13-10-2018 RAM_01695 d08fa675fc8b5d320574b2880aa89cf0 238 SMART SM00020 35 232 1.7E-16 T 13-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 RAM_01695 d08fa675fc8b5d320574b2880aa89cf0 238 SUPERFAMILY SSF50494 14 236 2.0E-35 T 13-10-2018 IPR009003 Peptidase S1, PA clan RAM_01695 d08fa675fc8b5d320574b2880aa89cf0 238 Pfam PF00089 Trypsin 37 232 8.7E-28 T 13-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 RAM_01695 d08fa675fc8b5d320574b2880aa89cf0 238 Gene3D G3DSA:2.40.10.10 109 236 4.5E-15 T 13-10-2018 RAM_35315 a7f8a9d9750333dce112147fbd18519a 201 Pfam PF00072 Response regulator receiver domain 4 115 7.6E-19 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_35315 a7f8a9d9750333dce112147fbd18519a 201 Pfam PF00196 Bacterial regulatory proteins, luxR family 140 195 1.1E-16 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_35315 a7f8a9d9750333dce112147fbd18519a 201 SUPERFAMILY SSF46894 132 201 1.09E-18 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_35315 a7f8a9d9750333dce112147fbd18519a 201 SMART SM00448 2 115 4.5E-18 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_35315 a7f8a9d9750333dce112147fbd18519a 201 SMART SM00421 138 195 2.7E-22 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_35315 a7f8a9d9750333dce112147fbd18519a 201 SUPERFAMILY SSF52172 2 128 3.84E-25 T 13-10-2018 IPR011006 CheY-like superfamily RAM_35315 a7f8a9d9750333dce112147fbd18519a 201 Gene3D G3DSA:3.40.50.12740 2 200 1.5E-50 T 13-10-2018 RAM_35315 a7f8a9d9750333dce112147fbd18519a 201 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 155 171 8.1E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_35315 a7f8a9d9750333dce112147fbd18519a 201 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 171 183 8.1E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_35315 a7f8a9d9750333dce112147fbd18519a 201 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 141 155 8.1E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_18870 0449ebfc9b83c81669a23ea6c4cdcb04 159 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 19 30 2.5E-14 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_18870 0449ebfc9b83c81669a23ea6c4cdcb04 159 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 30 49 2.5E-14 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_18870 0449ebfc9b83c81669a23ea6c4cdcb04 159 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 3 19 2.5E-14 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_18870 0449ebfc9b83c81669a23ea6c4cdcb04 159 Gene3D G3DSA:3.30.70.920 55 148 1.8E-16 T 13-10-2018 RAM_18870 0449ebfc9b83c81669a23ea6c4cdcb04 159 Gene3D G3DSA:1.10.10.10 1 54 1.7E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_18870 0449ebfc9b83c81669a23ea6c4cdcb04 159 SUPERFAMILY SSF46785 3 62 5.46E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_18870 0449ebfc9b83c81669a23ea6c4cdcb04 159 SUPERFAMILY SSF54909 64 148 6.17E-13 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_18870 0449ebfc9b83c81669a23ea6c4cdcb04 159 Pfam PF13412 Winged helix-turn-helix DNA-binding 4 50 3.1E-13 T 13-10-2018 RAM_18870 0449ebfc9b83c81669a23ea6c4cdcb04 159 SMART SM00344 3 112 1.0E-30 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RAM_18870 0449ebfc9b83c81669a23ea6c4cdcb04 159 Pfam PF01037 Lrp/AsnC ligand binding domain 69 142 3.0E-11 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RAM_44460 c071d73ce9fed66ff52549e347394a67 762 SUPERFAMILY SSF51126 458 658 4.96E-7 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor RAM_44460 c071d73ce9fed66ff52549e347394a67 762 Pfam PF13290 Chitobiase/beta-hexosaminidase C-terminal domain 125 190 5.3E-20 T 13-10-2018 RAM_09465 6efec9ae68fb021dff15ab24ba481219 193 SUPERFAMILY SSF53448 4 189 3.15E-29 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_09465 6efec9ae68fb021dff15ab24ba481219 193 Pfam PF12804 MobA-like NTP transferase domain 7 166 4.0E-35 T 13-10-2018 IPR025877 MobA-like NTP transferase RAM_09465 6efec9ae68fb021dff15ab24ba481219 193 Gene3D G3DSA:3.90.550.10 2 192 1.1E-49 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_14395 157ed7013687eb1d3f0e78f1471d23a9 429 Gene3D G3DSA:3.90.1150.10 17 417 4.2E-169 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_14395 157ed7013687eb1d3f0e78f1471d23a9 429 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 235 254 - T 13-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site RAM_14395 157ed7013687eb1d3f0e78f1471d23a9 429 SUPERFAMILY SSF53383 12 421 2.39E-118 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_14395 157ed7013687eb1d3f0e78f1471d23a9 429 Gene3D G3DSA:3.40.640.10 45 314 4.2E-169 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_14395 157ed7013687eb1d3f0e78f1471d23a9 429 TIGRFAM TIGR01979 sufS: cysteine desulfurase, SufS family 15 426 4.9E-174 T 13-10-2018 IPR010970 Cysteine desulfurase, SufS GO:0006534|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 RAM_14395 157ed7013687eb1d3f0e78f1471d23a9 429 Pfam PF00266 Aminotransferase class-V 34 414 8.3E-138 T 13-10-2018 IPR000192 Aminotransferase class V domain RAM_05930 9669b91ed2c2744c5b93ffbdf4a89694 274 Pfam PF02104 SURF1 family 20 226 1.2E-27 T 13-10-2018 IPR002994 Surfeit locus 1/Shy1 GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_37810 f9895a2d5677d0073cc44fe81f5cb45e 310 Pfam PF12833 Helix-turn-helix domain 225 303 2.3E-18 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_37810 f9895a2d5677d0073cc44fe81f5cb45e 310 SMART SM00342 219 302 1.1E-27 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_37810 f9895a2d5677d0073cc44fe81f5cb45e 310 SUPERFAMILY SSF46689 204 252 3.88E-7 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_37810 f9895a2d5677d0073cc44fe81f5cb45e 310 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 256 298 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RAM_37810 f9895a2d5677d0073cc44fe81f5cb45e 310 Pfam PF12852 Cupin 2 188 2.1E-43 T 13-10-2018 IPR032783 AraC-type transcription regulator, ligand-binding domain RAM_37810 f9895a2d5677d0073cc44fe81f5cb45e 310 Gene3D G3DSA:1.10.10.60 199 309 1.1E-24 T 13-10-2018 RAM_37810 f9895a2d5677d0073cc44fe81f5cb45e 310 SUPERFAMILY SSF46689 255 304 7.17E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_17430 0226021469bcb6f1928c376be92dcb46 425 PRINTS PR00385 P450 superfamily signature 297 308 1.1E-6 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_17430 0226021469bcb6f1928c376be92dcb46 425 PRINTS PR00385 P450 superfamily signature 364 373 1.1E-6 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_17430 0226021469bcb6f1928c376be92dcb46 425 PRINTS PR00385 P450 superfamily signature 373 384 1.1E-6 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_17430 0226021469bcb6f1928c376be92dcb46 425 PRINTS PR00385 P450 superfamily signature 262 279 1.1E-6 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_17430 0226021469bcb6f1928c376be92dcb46 425 Pfam PF00067 Cytochrome P450 230 394 4.6E-22 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_17430 0226021469bcb6f1928c376be92dcb46 425 Pfam PF00067 Cytochrome P450 74 203 1.9E-5 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_17430 0226021469bcb6f1928c376be92dcb46 425 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 366 375 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RAM_17430 0226021469bcb6f1928c376be92dcb46 425 SUPERFAMILY SSF48264 44 423 1.7E-86 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_17430 0226021469bcb6f1928c376be92dcb46 425 PRINTS PR00359 B-class P450 signature 315 342 2.0E-50 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_17430 0226021469bcb6f1928c376be92dcb46 425 PRINTS PR00359 B-class P450 signature 343 358 2.0E-50 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_17430 0226021469bcb6f1928c376be92dcb46 425 PRINTS PR00359 B-class P450 signature 218 240 2.0E-50 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_17430 0226021469bcb6f1928c376be92dcb46 425 PRINTS PR00359 B-class P450 signature 297 308 2.0E-50 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_17430 0226021469bcb6f1928c376be92dcb46 425 PRINTS PR00359 B-class P450 signature 117 128 2.0E-50 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_17430 0226021469bcb6f1928c376be92dcb46 425 PRINTS PR00359 B-class P450 signature 164 180 2.0E-50 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_17430 0226021469bcb6f1928c376be92dcb46 425 PRINTS PR00359 B-class P450 signature 364 373 2.0E-50 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_17430 0226021469bcb6f1928c376be92dcb46 425 PRINTS PR00359 B-class P450 signature 373 384 2.0E-50 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_17430 0226021469bcb6f1928c376be92dcb46 425 PRINTS PR00359 B-class P450 signature 181 196 2.0E-50 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_17430 0226021469bcb6f1928c376be92dcb46 425 Gene3D G3DSA:1.10.630.10 43 425 5.4E-110 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_02370 ecbdf4424206025c3d3ab3d7ad1b5080 327 SUPERFAMILY SSF53067 2 125 2.59E-30 T 13-10-2018 RAM_02370 ecbdf4424206025c3d3ab3d7ad1b5080 327 SUPERFAMILY SSF53067 130 306 1.53E-34 T 13-10-2018 RAM_02370 ecbdf4424206025c3d3ab3d7ad1b5080 327 Gene3D G3DSA:3.30.420.150 108 293 5.5E-77 T 13-10-2018 RAM_02370 ecbdf4424206025c3d3ab3d7ad1b5080 327 Gene3D G3DSA:3.30.420.40 5 300 5.5E-77 T 13-10-2018 RAM_02370 ecbdf4424206025c3d3ab3d7ad1b5080 327 Pfam PF02541 Ppx/GppA phosphatase family 17 305 1.1E-73 T 13-10-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 RAM_20290 2b545002d24522700897dd01e147d075 316 SMART SM00829 7 313 2.8E-11 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_20290 2b545002d24522700897dd01e147d075 316 SUPERFAMILY SSF50129 6 144 7.39E-25 T 13-10-2018 IPR011032 GroES-like superfamily RAM_20290 2b545002d24522700897dd01e147d075 316 Gene3D G3DSA:3.40.50.720 124 259 1.3E-65 T 13-10-2018 RAM_20290 2b545002d24522700897dd01e147d075 316 Pfam PF00107 Zinc-binding dehydrogenase 151 256 9.6E-15 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RAM_20290 2b545002d24522700897dd01e147d075 316 Gene3D G3DSA:3.90.180.10 6 311 1.3E-65 T 13-10-2018 RAM_20290 2b545002d24522700897dd01e147d075 316 SUPERFAMILY SSF51735 113 263 1.58E-28 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_20290 2b545002d24522700897dd01e147d075 316 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 85 5.8E-6 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_36185 ec7a1806c987ad803fef7d876e2ddfcb 441 TIGRFAM TIGR00379 cobB: cobyrinic acid a,c-diamide synthase 1 433 4.7E-127 T 13-10-2018 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA GO:0009236|GO:0042242 RAM_36185 ec7a1806c987ad803fef7d876e2ddfcb 441 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 245 422 9.6E-26 T 13-10-2018 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 RAM_36185 ec7a1806c987ad803fef7d876e2ddfcb 441 Gene3D G3DSA:3.40.50.300 1 187 8.7E-23 T 13-10-2018 RAM_36185 ec7a1806c987ad803fef7d876e2ddfcb 441 Gene3D G3DSA:3.40.50.880 251 410 2.9E-9 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_36185 ec7a1806c987ad803fef7d876e2ddfcb 441 SUPERFAMILY SSF52540 2 192 1.06E-41 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_36185 ec7a1806c987ad803fef7d876e2ddfcb 441 Hamap MF_00027 Hydrogenobyrinate a,c-diamide synthase [cobB]. 1 425 39.508 T 13-10-2018 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA GO:0009236|GO:0042242 RAM_36185 ec7a1806c987ad803fef7d876e2ddfcb 441 SUPERFAMILY SSF52317 242 435 1.56E-29 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_36185 ec7a1806c987ad803fef7d876e2ddfcb 441 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 1 186 1.9E-15 T 13-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain RAM_31860 d60bd1ed63b0b22e412a65b2219ac9cc 186 Gene3D G3DSA:3.30.230.60 4 170 7.3E-49 T 13-10-2018 IPR037075 Formaldehyde-activating enzyme superfamily GO:0016051|GO:0016840 KEGG: 00030+4.1.2.43|KEGG: 00680+4.2.1.147+4.1.2.43|MetaCyc: PWY-1723|MetaCyc: PWY-1861|MetaCyc: PWY-7796 RAM_31860 d60bd1ed63b0b22e412a65b2219ac9cc 186 SUPERFAMILY SSF54211 7 160 3.26E-41 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RAM_31860 d60bd1ed63b0b22e412a65b2219ac9cc 186 Pfam PF08714 Formaldehyde-activating enzyme (Fae) 9 161 8.2E-48 T 13-10-2018 IPR014826 Formaldehyde-activating enzyme GO:0016051|GO:0016840 KEGG: 00030+4.1.2.43|KEGG: 00680+4.2.1.147+4.1.2.43|MetaCyc: PWY-1723|MetaCyc: PWY-1861|MetaCyc: PWY-7796 RAM_31860 d60bd1ed63b0b22e412a65b2219ac9cc 186 TIGRFAM TIGR03126 one_C_fae: formaldehyde-activating enzyme 8 158 7.6E-35 T 13-10-2018 IPR014826 Formaldehyde-activating enzyme GO:0016051|GO:0016840 KEGG: 00030+4.1.2.43|KEGG: 00680+4.2.1.147+4.1.2.43|MetaCyc: PWY-1723|MetaCyc: PWY-1861|MetaCyc: PWY-7796 RAM_26280 4cef855a5a891e4a50c3848e5d22643e 857 Gene3D G3DSA:1.25.40.10 245 323 7.7E-8 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_26280 4cef855a5a891e4a50c3848e5d22643e 857 SUPERFAMILY SSF48452 263 322 2.53E-7 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_00285 094d737080f64530ec03f210562780f0 411 Gene3D G3DSA:2.60.200.20 292 410 4.6E-29 T 13-10-2018 RAM_00285 094d737080f64530ec03f210562780f0 411 Gene3D G3DSA:3.30.2320.60 2 128 5.8E-42 T 13-10-2018 RAM_00285 094d737080f64530ec03f210562780f0 411 Pfam PF12401 Protein of unknown function (DUF2662) 5 118 5.0E-36 T 13-10-2018 IPR022128 Domain of unknown function DUF3662 RAM_00285 094d737080f64530ec03f210562780f0 411 SMART SM00240 337 387 3.3E-13 T 13-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 RAM_00285 094d737080f64530ec03f210562780f0 411 Pfam PF00498 FHA domain 339 401 2.3E-17 T 13-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 RAM_00285 094d737080f64530ec03f210562780f0 411 SUPERFAMILY SSF49879 287 408 3.83E-30 T 13-10-2018 IPR008984 SMAD/FHA domain superfamily GO:0005515 RAM_20975 2d391c27b94539a270c537208781dc41 265 Pfam PF01614 Bacterial transcriptional regulator 142 260 4.7E-22 T 13-10-2018 IPR014757 Transcription regulator IclR, C-terminal RAM_20975 2d391c27b94539a270c537208781dc41 265 SUPERFAMILY SSF46785 26 94 1.93E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_20975 2d391c27b94539a270c537208781dc41 265 Pfam PF09339 IclR helix-turn-helix domain 26 75 5.8E-16 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RAM_20975 2d391c27b94539a270c537208781dc41 265 SUPERFAMILY SSF55781 87 263 1.18E-41 T 13-10-2018 RAM_20975 2d391c27b94539a270c537208781dc41 265 SMART SM00346 23 112 6.3E-25 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RAM_20975 2d391c27b94539a270c537208781dc41 265 Gene3D G3DSA:1.10.10.10 24 99 2.3E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_20975 2d391c27b94539a270c537208781dc41 265 Gene3D G3DSA:3.30.450.40 100 264 5.9E-45 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_10905 d28c50190e2123fade1ca2984dde0357 164 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 40 85 1.1E-7 T 13-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RAM_10905 d28c50190e2123fade1ca2984dde0357 164 SUPERFAMILY SSF69118 3 161 5.23E-36 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_10905 d28c50190e2123fade1ca2984dde0357 164 Pfam PF02627 Carboxymuconolactone decarboxylase family 33 85 1.3E-6 T 13-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RAM_10905 d28c50190e2123fade1ca2984dde0357 164 Gene3D G3DSA:1.20.1290.10 1 162 2.0E-35 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_28560 2214e72c5ac81d4a2c24fe8f3d50e912 179 SUPERFAMILY SSF46689 5 70 2.15E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_28560 2214e72c5ac81d4a2c24fe8f3d50e912 179 Gene3D G3DSA:1.10.357.10 8 175 2.1E-33 T 13-10-2018 RAM_28560 2214e72c5ac81d4a2c24fe8f3d50e912 179 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 60 4.4E-13 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_28560 2214e72c5ac81d4a2c24fe8f3d50e912 179 SUPERFAMILY SSF48498 76 168 2.18E-8 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_28560 2214e72c5ac81d4a2c24fe8f3d50e912 179 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 2.5E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_28560 2214e72c5ac81d4a2c24fe8f3d50e912 179 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 2.5E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_44825 30b6316fabea93fa8a3fe3cf8adc7925 258 Hamap MF_01274 Type III pantothenate kinase [coaX]. 1 256 32.209 T 13-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 RAM_44825 30b6316fabea93fa8a3fe3cf8adc7925 258 Gene3D G3DSA:3.30.420.40 87 257 1.1E-51 T 13-10-2018 RAM_44825 30b6316fabea93fa8a3fe3cf8adc7925 258 SUPERFAMILY SSF53067 122 255 1.42E-31 T 13-10-2018 RAM_44825 30b6316fabea93fa8a3fe3cf8adc7925 258 Gene3D G3DSA:3.30.420.40 1 85 1.3E-20 T 13-10-2018 RAM_44825 30b6316fabea93fa8a3fe3cf8adc7925 258 Pfam PF03309 Type III pantothenate kinase 2 204 1.2E-60 T 13-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 RAM_44825 30b6316fabea93fa8a3fe3cf8adc7925 258 SUPERFAMILY SSF53067 2 119 2.23E-27 T 13-10-2018 RAM_44825 30b6316fabea93fa8a3fe3cf8adc7925 258 TIGRFAM TIGR00671 baf: pantothenate kinase, type III 2 251 9.2E-71 T 13-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 RAM_26205 703e98c41350408ed8d70fcb0c4941b5 513 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 245 338 7.4E-18 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_26205 703e98c41350408ed8d70fcb0c4941b5 513 Gene3D G3DSA:3.60.40.10 205 355 4.7E-29 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_26205 703e98c41350408ed8d70fcb0c4941b5 513 SUPERFAMILY SSF55781 40 175 9.42E-8 T 13-10-2018 RAM_26205 703e98c41350408ed8d70fcb0c4941b5 513 SMART SM00331 209 426 0.0031 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_26205 703e98c41350408ed8d70fcb0c4941b5 513 Gene3D G3DSA:3.30.450.40 13 188 2.6E-10 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_32085 ca1ba769b801e69cde8dc22932abe3a4 500 SUPERFAMILY SSF53244 342 482 4.21E-33 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 RAM_32085 ca1ba769b801e69cde8dc22932abe3a4 500 Gene3D G3DSA:3.40.1390.10 1 81 1.0E-24 T 13-10-2018 RAM_32085 ca1ba769b801e69cde8dc22932abe3a4 500 Gene3D G3DSA:3.90.190.20 339 494 4.6E-38 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 RAM_32085 ca1ba769b801e69cde8dc22932abe3a4 500 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 32 482 2.1E-124 T 13-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RAM_32085 ca1ba769b801e69cde8dc22932abe3a4 500 SUPERFAMILY SSF53623 127 335 2.62E-52 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RAM_32085 ca1ba769b801e69cde8dc22932abe3a4 500 Pfam PF08245 Mur ligase middle domain 132 319 2.4E-42 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 RAM_32085 ca1ba769b801e69cde8dc22932abe3a4 500 Gene3D G3DSA:3.40.1190.10 106 337 4.6E-71 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RAM_32085 ca1ba769b801e69cde8dc22932abe3a4 500 SUPERFAMILY SSF63418 3 82 8.37E-19 T 13-10-2018 IPR035911 MurE/MurF, N-terminal RAM_32085 ca1ba769b801e69cde8dc22932abe3a4 500 Pfam PF02875 Mur ligase family, glutamate ligase domain 342 429 5.5E-20 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 RAM_32085 ca1ba769b801e69cde8dc22932abe3a4 500 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 4 483 31.778 T 13-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RAM_32085 ca1ba769b801e69cde8dc22932abe3a4 500 Pfam PF01225 Mur ligase family, catalytic domain 30 80 5.4E-10 T 13-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 RAM_47235 1892607261d0bae56af9cec83fb31d76 552 Gene3D G3DSA:3.30.1490.270 381 441 1.1E-22 T 13-10-2018 RAM_47235 1892607261d0bae56af9cec83fb31d76 552 Pfam PF14403 Circularly permuted ATP-grasp type 2 109 485 1.4E-158 T 13-10-2018 IPR025841 Circularly permuted ATP-grasp type 2 RAM_47235 1892607261d0bae56af9cec83fb31d76 552 SUPERFAMILY SSF56059 84 500 7.19E-57 T 13-10-2018 RAM_47235 1892607261d0bae56af9cec83fb31d76 552 PIRSF PIRSF005522 35 512 1.2E-211 T 13-10-2018 IPR016450 Uncharacterised conserved protein UCP005522 RAM_47235 1892607261d0bae56af9cec83fb31d76 552 Gene3D G3DSA:3.40.50.11290 246 344 2.2E-39 T 13-10-2018 RAM_21145 12f496a5f757cde29f433b320f8071e4 189 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 1.5E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_21145 12f496a5f757cde29f433b320f8071e4 189 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 1.5E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_21145 12f496a5f757cde29f433b320f8071e4 189 SUPERFAMILY SSF48498 80 186 2.36E-18 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_21145 12f496a5f757cde29f433b320f8071e4 189 SUPERFAMILY SSF46689 5 84 8.21E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_21145 12f496a5f757cde29f433b320f8071e4 189 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 58 1.2E-13 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_21145 12f496a5f757cde29f433b320f8071e4 189 Gene3D G3DSA:1.10.357.10 5 189 3.3E-59 T 13-10-2018 RAM_47370 a3f057d61c248e42e6c525a2b9f73d3e 244 SUPERFAMILY SSF89082 159 241 3.27E-15 T 13-10-2018 IPR036244 TipA-like multidrug resistance regulator, antibiotic-recognition domain RAM_47370 a3f057d61c248e42e6c525a2b9f73d3e 244 SMART SM00422 3 72 7.2E-15 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_47370 a3f057d61c248e42e6c525a2b9f73d3e 244 Pfam PF07739 TipAS antibiotic-recognition domain 127 237 1.1E-26 T 13-10-2018 IPR012925 TipAS antibiotic-recognition domain RAM_47370 a3f057d61c248e42e6c525a2b9f73d3e 244 SUPERFAMILY SSF46955 3 109 4.76E-24 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily RAM_47370 a3f057d61c248e42e6c525a2b9f73d3e 244 Gene3D G3DSA:1.10.490.50 156 242 2.6E-9 T 13-10-2018 IPR036244 TipA-like multidrug resistance regulator, antibiotic-recognition domain RAM_47370 a3f057d61c248e42e6c525a2b9f73d3e 244 Pfam PF13411 MerR HTH family regulatory protein 4 71 1.1E-15 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_47370 a3f057d61c248e42e6c525a2b9f73d3e 244 Gene3D G3DSA:1.10.1660.10 1 136 8.2E-37 T 13-10-2018 RAM_47370 a3f057d61c248e42e6c525a2b9f73d3e 244 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 39 59 1.4E-5 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_47370 a3f057d61c248e42e6c525a2b9f73d3e 244 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 4 15 1.4E-5 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_47370 a3f057d61c248e42e6c525a2b9f73d3e 244 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 15 28 1.4E-5 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_26400 ce370919ee45af4c89ae425ba6dae2b6 271 Gene3D G3DSA:1.20.1290.10 151 271 4.4E-40 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_26400 ce370919ee45af4c89ae425ba6dae2b6 271 Gene3D G3DSA:1.20.1290.10 11 131 6.6E-28 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_26400 ce370919ee45af4c89ae425ba6dae2b6 271 Pfam PF02627 Carboxymuconolactone decarboxylase family 181 266 2.4E-17 T 13-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RAM_26400 ce370919ee45af4c89ae425ba6dae2b6 271 Pfam PF02627 Carboxymuconolactone decarboxylase family 42 126 5.0E-15 T 13-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RAM_26400 ce370919ee45af4c89ae425ba6dae2b6 271 SUPERFAMILY SSF69118 16 271 5.6E-57 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_08565 5ededab2ef22da9da5b32a793448a4e8 168 SUPERFAMILY SSF55021 4 76 9.6E-24 T 13-10-2018 RAM_08565 5ededab2ef22da9da5b32a793448a4e8 168 Pfam PF10369 Small subunit of acetolactate synthase 85 158 2.2E-27 T 13-10-2018 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 RAM_08565 5ededab2ef22da9da5b32a793448a4e8 168 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 4 74 2.0E-31 T 13-10-2018 RAM_08565 5ededab2ef22da9da5b32a793448a4e8 168 Pfam PF01842 ACT domain 4 69 1.4E-17 T 13-10-2018 IPR002912 ACT domain RAM_08565 5ededab2ef22da9da5b32a793448a4e8 168 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 4 158 5.4E-63 T 13-10-2018 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 RAM_08565 5ededab2ef22da9da5b32a793448a4e8 168 Gene3D G3DSA:3.30.70.260 1 80 1.4E-36 T 13-10-2018 RAM_08565 5ededab2ef22da9da5b32a793448a4e8 168 SUPERFAMILY SSF55021 81 161 1.65E-25 T 13-10-2018 RAM_08565 5ededab2ef22da9da5b32a793448a4e8 168 Gene3D G3DSA:3.30.70.1150 84 163 5.0E-29 T 13-10-2018 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal RAM_07855 29ddf9c3d6759b6dc1723da94f1566e6 568 SUPERFAMILY SSF47203 239 393 2.74E-24 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_07855 29ddf9c3d6759b6dc1723da94f1566e6 568 Gene3D G3DSA:1.20.140.10 243 391 1.6E-19 T 13-10-2018 RAM_07855 29ddf9c3d6759b6dc1723da94f1566e6 568 SUPERFAMILY SSF56645 12 233 9.03E-29 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_07855 29ddf9c3d6759b6dc1723da94f1566e6 568 Gene3D G3DSA:2.40.110.10 132 242 2.1E-14 T 13-10-2018 RAM_07855 29ddf9c3d6759b6dc1723da94f1566e6 568 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 240 388 4.0E-17 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_13655 a1571bd43402c32c10075a48946691d1 283 SUPERFAMILY SSF52540 67 243 2.13E-18 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_13655 a1571bd43402c32c10075a48946691d1 283 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 45 256 2.4E-68 T 13-10-2018 IPR022488 Polyphosphate kinase-2-related RAM_13655 a1571bd43402c32c10075a48946691d1 283 TIGRFAM TIGR03709 PPK2_rel_1: polyphosphate:nucleotide phosphotransferase, PPK2 family 32 272 1.2E-97 T 13-10-2018 IPR022300 Polyphosphate:nucleotide phosphotransferase, PPK2 GO:0006797|GO:0016776 KEGG: 00190+2.7.4.1 RAM_13655 a1571bd43402c32c10075a48946691d1 283 Gene3D G3DSA:3.40.50.300 2 278 1.3E-103 T 13-10-2018 RAM_24780 a3d63a056e390df48e04626296cf2aac 210 SUPERFAMILY SSF46689 28 97 3.13E-19 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_24780 a3d63a056e390df48e04626296cf2aac 210 Pfam PF00440 Bacterial regulatory proteins, tetR family 39 83 1.4E-16 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_24780 a3d63a056e390df48e04626296cf2aac 210 Gene3D G3DSA:1.10.357.10 23 209 9.6E-34 T 13-10-2018 RAM_24780 a3d63a056e390df48e04626296cf2aac 210 ProSitePatterns PS01081 TetR-type HTH domain signature. 50 80 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RAM_24780 a3d63a056e390df48e04626296cf2aac 210 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 51 3.2E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_24780 a3d63a056e390df48e04626296cf2aac 210 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 59 82 3.2E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_38165 eca6862ac3b77458cbd5ef07c98c443b 222 PRINTS PR00400 Tetracycline repressor protein signature 88 107 3.5E-6 T 13-10-2018 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 RAM_38165 eca6862ac3b77458cbd5ef07c98c443b 222 PRINTS PR00400 Tetracycline repressor protein signature 203 217 3.5E-6 T 13-10-2018 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 RAM_38165 eca6862ac3b77458cbd5ef07c98c443b 222 PRINTS PR00400 Tetracycline repressor protein signature 35 58 3.5E-6 T 13-10-2018 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 RAM_38165 eca6862ac3b77458cbd5ef07c98c443b 222 Pfam PF00440 Bacterial regulatory proteins, tetR family 25 68 2.3E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_38165 eca6862ac3b77458cbd5ef07c98c443b 222 SUPERFAMILY SSF48498 86 221 6.12E-21 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_38165 eca6862ac3b77458cbd5ef07c98c443b 222 Pfam PF02909 Tetracyclin repressor, C-terminal all-alpha domain 81 220 3.0E-15 T 13-10-2018 IPR004111 Tetracycline transcriptional regulator, TetR, C-terminal GO:0045892 RAM_38165 eca6862ac3b77458cbd5ef07c98c443b 222 Gene3D G3DSA:1.10.357.10 6 222 6.3E-55 T 13-10-2018 RAM_38165 eca6862ac3b77458cbd5ef07c98c443b 222 SUPERFAMILY SSF46689 12 77 3.9E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_44190 1ba88e80c110b5be4bc3f3df4a256956 473 Gene3D G3DSA:1.10.620.20 4 473 2.3E-200 T 13-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 RAM_44190 1ba88e80c110b5be4bc3f3df4a256956 473 TIGRFAM TIGR03225 benzo_boxB: benzoyl-CoA oxygenase, B subunit 5 471 8.9E-225 T 13-10-2018 IPR017635 Benzoyl-CoA oxygenase, B subunit KEGG: 00362+1.14.13.208|MetaCyc: PWY-1361 RAM_44190 1ba88e80c110b5be4bc3f3df4a256956 473 SUPERFAMILY SSF47240 107 345 1.14E-44 T 13-10-2018 IPR009078 Ferritin-like superfamily RAM_35420 3aa0ffb6fbdec5d2cf0b0ee635c83c3a 865 Hamap MF_01612 FO synthase subunit 2 [cofH]. 473 838 47.315 T 13-10-2018 IPR019940 CofH family GO:0016765 KEGG: 00680+2.5.1.77 RAM_35420 3aa0ffb6fbdec5d2cf0b0ee635c83c3a 865 SUPERFAMILY SSF102114 40 369 3.14E-37 T 13-10-2018 RAM_35420 3aa0ffb6fbdec5d2cf0b0ee635c83c3a 865 SMART SM00729 72 305 1.6E-6 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 RAM_35420 3aa0ffb6fbdec5d2cf0b0ee635c83c3a 865 TIGRFAM TIGR03550 F420_cofG: 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit 69 393 8.3E-147 T 13-10-2018 IPR019939 CofG family GO:0009108|GO:0016765|GO:0051539 KEGG: 00680+2.5.1.77 RAM_35420 3aa0ffb6fbdec5d2cf0b0ee635c83c3a 865 Pfam PF04055 Radical SAM superfamily 529 703 5.6E-15 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RAM_35420 3aa0ffb6fbdec5d2cf0b0ee635c83c3a 865 SUPERFAMILY SSF102114 485 829 5.49E-44 T 13-10-2018 RAM_35420 3aa0ffb6fbdec5d2cf0b0ee635c83c3a 865 Pfam PF04055 Radical SAM superfamily 76 254 4.2E-11 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RAM_35420 3aa0ffb6fbdec5d2cf0b0ee635c83c3a 865 Gene3D G3DSA:3.20.20.70 4 329 2.2E-50 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_35420 3aa0ffb6fbdec5d2cf0b0ee635c83c3a 865 Hamap MF_01611 FO synthase subunit 1 [cofG]. 68 395 49.969 T 13-10-2018 IPR019939 CofG family GO:0009108|GO:0016765|GO:0051539 KEGG: 00680+2.5.1.77 RAM_35420 3aa0ffb6fbdec5d2cf0b0ee635c83c3a 865 TIGRFAM TIGR00423 TIGR00423: radical SAM domain protein, CofH subfamily 521 834 8.5E-105 T 13-10-2018 IPR020050 FO synthase, subunit 2 GO:0016765 KEGG: 00680+2.5.1.77 RAM_35420 3aa0ffb6fbdec5d2cf0b0ee635c83c3a 865 Gene3D G3DSA:3.20.20.70 467 837 2.8E-45 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_35420 3aa0ffb6fbdec5d2cf0b0ee635c83c3a 865 TIGRFAM TIGR03551 F420_cofH: 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit 487 835 2.6E-153 T 13-10-2018 IPR019940 CofH family GO:0016765 KEGG: 00680+2.5.1.77 RAM_14150 2a455887786508cf67f688268af65fac 191 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 31 54 1.3E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_14150 2a455887786508cf67f688268af65fac 191 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 10 23 1.3E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_14150 2a455887786508cf67f688268af65fac 191 Gene3D G3DSA:1.10.357.10 1 190 2.6E-43 T 13-10-2018 RAM_14150 2a455887786508cf67f688268af65fac 191 ProSitePatterns PS01081 TetR-type HTH domain signature. 22 52 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RAM_14150 2a455887786508cf67f688268af65fac 191 SUPERFAMILY SSF46689 2 76 5.49E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_14150 2a455887786508cf67f688268af65fac 191 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 56 1.4E-14 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_38065 3b3eefcb9b91ed1f74877ef36e53cb76 391 Gene3D G3DSA:3.40.50.2000 204 364 8.1E-99 T 13-10-2018 RAM_38065 3b3eefcb9b91ed1f74877ef36e53cb76 391 SUPERFAMILY SSF53756 26 380 3.99E-85 T 13-10-2018 RAM_38065 3b3eefcb9b91ed1f74877ef36e53cb76 391 Gene3D G3DSA:3.40.50.2000 29 374 8.1E-99 T 13-10-2018 RAM_38065 3b3eefcb9b91ed1f74877ef36e53cb76 391 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 49 377 8.1E-82 T 13-10-2018 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 RAM_38065 3b3eefcb9b91ed1f74877ef36e53cb76 391 TIGRFAM TIGR00236 wecB: UDP-N-acetylglucosamine 2-epimerase 26 377 2.0E-79 T 13-10-2018 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 RAM_29450 af594926a28370ad7565e2cc0b79deb3 325 Gene3D G3DSA:3.20.20.100 4 324 1.2E-118 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_29450 af594926a28370ad7565e2cc0b79deb3 325 Pfam PF00248 Aldo/keto reductase family 13 307 1.0E-81 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain RAM_29450 af594926a28370ad7565e2cc0b79deb3 325 SUPERFAMILY SSF51430 8 307 7.73E-101 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_19095 1d9865141cdceeedde53759540d13170 723 SUPERFAMILY SSF51445 307 639 5.76E-99 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_19095 1d9865141cdceeedde53759540d13170 723 Gene3D G3DSA:2.70.98.60 97 291 3.1E-32 T 13-10-2018 IPR038417 Alpha-galactosidase, N-terminal domain superfamily KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_19095 1d9865141cdceeedde53759540d13170 723 Gene3D G3DSA:3.20.20.70 293 608 1.7E-124 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_19095 1d9865141cdceeedde53759540d13170 723 Pfam PF02065 Melibiase 273 610 8.5E-112 T 13-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_19095 1d9865141cdceeedde53759540d13170 723 PIRSF PIRSF005536 17 702 7.2E-168 T 13-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_19095 1d9865141cdceeedde53759540d13170 723 Pfam PF16875 Glycosyl hydrolase family 36 N-terminal domain 37 264 4.4E-44 T 13-10-2018 IPR031704 Glycosyl hydrolase family 36, N-terminal KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_19095 1d9865141cdceeedde53759540d13170 723 PRINTS PR00743 Glycosyl hydrolase family 36 signature 310 324 1.3E-38 T 13-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_19095 1d9865141cdceeedde53759540d13170 723 PRINTS PR00743 Glycosyl hydrolase family 36 signature 388 410 1.3E-38 T 13-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_19095 1d9865141cdceeedde53759540d13170 723 PRINTS PR00743 Glycosyl hydrolase family 36 signature 521 537 1.3E-38 T 13-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_19095 1d9865141cdceeedde53759540d13170 723 PRINTS PR00743 Glycosyl hydrolase family 36 signature 446 461 1.3E-38 T 13-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_19095 1d9865141cdceeedde53759540d13170 723 PRINTS PR00743 Glycosyl hydrolase family 36 signature 225 240 1.3E-38 T 13-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_19095 1d9865141cdceeedde53759540d13170 723 PRINTS PR00743 Glycosyl hydrolase family 36 signature 338 353 1.3E-38 T 13-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_19095 1d9865141cdceeedde53759540d13170 723 PRINTS PR00743 Glycosyl hydrolase family 36 signature 496 512 1.3E-38 T 13-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_19095 1d9865141cdceeedde53759540d13170 723 Pfam PF16874 Glycosyl hydrolase family 36 C-terminal domain 628 710 2.2E-8 T 13-10-2018 IPR031705 Glycosyl hydrolase family 36, C-terminal KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_25540 69922bd4a53d0bf5d23b0f6eb8a45937 261 Gene3D G3DSA:1.10.10.10 16 81 2.6E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_25540 69922bd4a53d0bf5d23b0f6eb8a45937 261 SUPERFAMILY SSF55781 77 252 3.79E-44 T 13-10-2018 RAM_25540 69922bd4a53d0bf5d23b0f6eb8a45937 261 SMART SM00346 18 102 4.8E-16 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RAM_25540 69922bd4a53d0bf5d23b0f6eb8a45937 261 Gene3D G3DSA:3.30.450.40 88 260 4.2E-52 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_25540 69922bd4a53d0bf5d23b0f6eb8a45937 261 SUPERFAMILY SSF46785 18 83 4.56E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_25540 69922bd4a53d0bf5d23b0f6eb8a45937 261 Pfam PF09339 IclR helix-turn-helix domain 17 67 6.1E-14 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RAM_25540 69922bd4a53d0bf5d23b0f6eb8a45937 261 Pfam PF01614 Bacterial transcriptional regulator 131 250 2.4E-29 T 13-10-2018 IPR014757 Transcription regulator IclR, C-terminal RAM_11420 63818df6ac3576c27d92fc4ab8aadd97 156 Gene3D G3DSA:3.40.1000.10 5 153 2.0E-20 T 13-10-2018 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich RAM_30850 080951139b161726a7d3565949b56dcb 217 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 72 2.4E-19 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_30850 080951139b161726a7d3565949b56dcb 217 Gene3D G3DSA:1.20.120.530 76 210 6.9E-31 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_30850 080951139b161726a7d3565949b56dcb 217 Pfam PF07729 FCD domain 82 201 1.0E-27 T 13-10-2018 IPR011711 GntR, C-terminal RAM_30850 080951139b161726a7d3565949b56dcb 217 SUPERFAMILY SSF48008 79 208 6.02E-28 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_30850 080951139b161726a7d3565949b56dcb 217 SMART SM00895 82 202 9.4E-23 T 13-10-2018 IPR011711 GntR, C-terminal RAM_30850 080951139b161726a7d3565949b56dcb 217 Gene3D G3DSA:1.10.10.10 2 74 1.1E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_30850 080951139b161726a7d3565949b56dcb 217 SMART SM00345 14 72 5.4E-17 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_30850 080951139b161726a7d3565949b56dcb 217 SUPERFAMILY SSF46785 11 98 6.93E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_30850 080951139b161726a7d3565949b56dcb 217 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 46 62 6.5E-8 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_30850 080951139b161726a7d3565949b56dcb 217 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 32 46 6.5E-8 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_44105 03679ed42d852b3971af68a8c4553a9a 915 Gene3D G3DSA:1.10.10.10 1 96 2.0E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_44105 03679ed42d852b3971af68a8c4553a9a 915 SUPERFAMILY SSF52540 262 523 1.22E-23 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_44105 03679ed42d852b3971af68a8c4553a9a 915 SUPERFAMILY SSF48452 95 255 1.26E-26 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_44105 03679ed42d852b3971af68a8c4553a9a 915 SMART SM00862 18 93 4.5E-12 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_44105 03679ed42d852b3971af68a8c4553a9a 915 Gene3D G3DSA:3.40.50.300 260 417 4.3E-22 T 13-10-2018 RAM_44105 03679ed42d852b3971af68a8c4553a9a 915 Pfam PF00486 Transcriptional regulatory protein, C terminal 30 93 1.7E-9 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_44105 03679ed42d852b3971af68a8c4553a9a 915 SUPERFAMILY SSF48452 753 891 2.25E-12 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_44105 03679ed42d852b3971af68a8c4553a9a 915 SUPERFAMILY SSF46894 5 93 1.93E-14 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_44105 03679ed42d852b3971af68a8c4553a9a 915 Gene3D G3DSA:1.25.40.10 98 259 6.3E-37 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_44105 03679ed42d852b3971af68a8c4553a9a 915 Pfam PF03704 Bacterial transcriptional activator domain 101 237 1.2E-31 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_44105 03679ed42d852b3971af68a8c4553a9a 915 Gene3D G3DSA:1.25.40.10 736 915 7.5E-20 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_44105 03679ed42d852b3971af68a8c4553a9a 915 PRINTS PR00364 Disease resistance protein signature 454 468 4.0E-8 T 13-10-2018 RAM_44105 03679ed42d852b3971af68a8c4553a9a 915 PRINTS PR00364 Disease resistance protein signature 293 308 4.0E-8 T 13-10-2018 RAM_44105 03679ed42d852b3971af68a8c4553a9a 915 PRINTS PR00364 Disease resistance protein signature 372 386 4.0E-8 T 13-10-2018 RAM_44105 03679ed42d852b3971af68a8c4553a9a 915 Pfam PF00931 NB-ARC domain 289 532 9.5E-9 T 13-10-2018 IPR002182 NB-ARC GO:0043531 Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-6798695|Reactome: R-HSA-6803207|Reactome: R-HSA-8953750 RAM_44105 03679ed42d852b3971af68a8c4553a9a 915 SMART SM01043 100 237 3.9E-35 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_08095 4f19ab928e94a29970d7c05e8a2d9db8 345 Gene3D G3DSA:2.60.120.10 252 336 4.5E-9 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_08095 4f19ab928e94a29970d7c05e8a2d9db8 345 Gene3D G3DSA:2.60.120.10 3 236 2.8E-40 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_08095 4f19ab928e94a29970d7c05e8a2d9db8 345 SUPERFAMILY SSF51182 4 338 2.34E-51 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RAM_08095 4f19ab928e94a29970d7c05e8a2d9db8 345 PIRSF PIRSF036894 17 337 6.9E-34 T 13-10-2018 IPR014628 Mannose-6-phosphate isomerase, Firmicutes type, short form GO:0004476|GO:0005975 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882 RAM_40015 1b241295c8638e256702a22d010e0b5e 356 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 226 242 - T 13-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 RAM_40015 1b241295c8638e256702a22d010e0b5e 356 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 5 353 6.5E-148 T 13-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 RAM_40015 1b241295c8638e256702a22d010e0b5e 356 Pfam PF03462 PCRF domain 11 202 3.3E-65 T 13-10-2018 IPR005139 Peptide chain release factor GO:0006415 RAM_40015 1b241295c8638e256702a22d010e0b5e 356 SUPERFAMILY SSF75620 9 351 1.31E-126 T 13-10-2018 RAM_40015 1b241295c8638e256702a22d010e0b5e 356 SMART SM00937 64 177 4.5E-51 T 13-10-2018 IPR005139 Peptide chain release factor GO:0006415 RAM_40015 1b241295c8638e256702a22d010e0b5e 356 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 2 355 37.552 T 13-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 RAM_40015 1b241295c8638e256702a22d010e0b5e 356 Gene3D G3DSA:3.30.70.1660 105 340 1.2E-91 T 13-10-2018 RAM_40015 1b241295c8638e256702a22d010e0b5e 356 Pfam PF00472 RF-1 domain 210 319 7.1E-40 T 13-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 RAM_40015 1b241295c8638e256702a22d010e0b5e 356 Gene3D G3DSA:1.20.58.410 4 96 1.8E-9 T 13-10-2018 RAM_40015 1b241295c8638e256702a22d010e0b5e 356 Gene3D G3DSA:3.30.160.20 209 295 1.2E-91 T 13-10-2018 RAM_23710 65d46ae585b8c6459f63aa879b0513ef 298 Gene3D G3DSA:1.10.3720.10 83 298 6.6E-21 T 13-10-2018 IPR035906 MetI-like superfamily RAM_23710 65d46ae585b8c6459f63aa879b0513ef 298 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 298 2.4E-23 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_23710 65d46ae585b8c6459f63aa879b0513ef 298 SUPERFAMILY SSF161098 92 280 1.13E-25 T 13-10-2018 IPR035906 MetI-like superfamily RAM_31265 ef0cd6c4200c966ef31acb2e2eec895b 247 Pfam PF03649 Uncharacterised protein family (UPF0014) 12 238 5.9E-48 T 13-10-2018 IPR005226 UPF0014 family RAM_05085 9b71b2e039f728aaaafaa0f88efe692c 309 Gene3D G3DSA:3.40.50.1820 57 302 1.6E-75 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_05085 9b71b2e039f728aaaafaa0f88efe692c 309 Pfam PF01674 Lipase (class 2) 72 245 1.1E-12 T 13-10-2018 IPR002918 Lipase EstA/Esterase EstB GO:0016787 KEGG: 00561+3.1.1.3|MetaCyc: PWY-6857 RAM_05085 9b71b2e039f728aaaafaa0f88efe692c 309 SUPERFAMILY SSF53474 70 278 7.6E-27 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_47580 5d9b9714698a32f4f8fec05adea64930 688 Pfam PF05787 Bacterial protein of unknown function (DUF839) 94 645 2.7E-161 T 13-10-2018 IPR008557 Protein of unknown function DUF839 RAM_47580 5d9b9714698a32f4f8fec05adea64930 688 SUPERFAMILY SSF63829 334 623 3.6E-6 T 13-10-2018 RAM_44180 c733e8ea93b967430b8f6efae02bf988 284 SUPERFAMILY SSF51556 6 281 1.11E-51 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_44180 c733e8ea93b967430b8f6efae02bf988 284 Pfam PF04909 Amidohydrolase 90 279 4.2E-34 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RAM_44180 c733e8ea93b967430b8f6efae02bf988 284 Gene3D G3DSA:3.20.20.140 7 281 5.0E-53 T 13-10-2018 RAM_20295 926415c3e7f186b00e66bf995f943381 169 SUPERFAMILY SSF46689 1 62 2.05E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_20295 926415c3e7f186b00e66bf995f943381 169 Pfam PF00440 Bacterial regulatory proteins, tetR family 1 39 7.0E-13 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_20295 926415c3e7f186b00e66bf995f943381 169 Gene3D G3DSA:1.10.357.10 1 167 1.1E-38 T 13-10-2018 RAM_20295 926415c3e7f186b00e66bf995f943381 169 SUPERFAMILY SSF48498 59 163 3.65E-17 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_22650 299e2c4b6646649faad9f6a70662415c 208 Gene3D G3DSA:3.30.700.10 10 109 7.5E-7 T 13-10-2018 RAM_22650 299e2c4b6646649faad9f6a70662415c 208 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 8 27 8.6E-8 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site RAM_22650 299e2c4b6646649faad9f6a70662415c 208 Pfam PF07963 Prokaryotic N-terminal methylation motif 4 29 4.1E-9 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site RAM_22650 299e2c4b6646649faad9f6a70662415c 208 SUPERFAMILY SSF54523 10 124 7.85E-8 T 13-10-2018 RAM_40315 3a601a8ae5d7c99a4f9c9d15fccaaa5d 243 SUPERFAMILY SSF53335 11 159 7.98E-19 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_40315 3a601a8ae5d7c99a4f9c9d15fccaaa5d 243 Pfam PF08241 Methyltransferase domain 36 115 5.5E-12 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 RAM_40315 3a601a8ae5d7c99a4f9c9d15fccaaa5d 243 Gene3D G3DSA:3.40.50.150 2 243 3.7E-48 T 13-10-2018 RAM_32020 b206851aedae032e3b8008c781559604 1116 SUPERFAMILY SSF47336 1004 1077 1.96E-17 T 13-10-2018 IPR036736 ACP-like superfamily RAM_32020 b206851aedae032e3b8008c781559604 1116 Gene3D G3DSA:3.40.50.1820 1002 1105 5.8E-23 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_32020 b206851aedae032e3b8008c781559604 1116 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 531 928 5.0E-125 T 13-10-2018 IPR010071 Amino acid adenylation domain RAM_32020 b206851aedae032e3b8008c781559604 1116 Gene3D G3DSA:3.30.559.10 51 419 6.0E-132 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_32020 b206851aedae032e3b8008c781559604 1116 Gene3D G3DSA:3.30.559.30 231 472 6.0E-132 T 13-10-2018 RAM_32020 b206851aedae032e3b8008c781559604 1116 ProSitePatterns PS00455 Putative AMP-binding domain signature. 648 659 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_32020 b206851aedae032e3b8008c781559604 1116 Gene3D G3DSA:3.40.50.12780 501 896 8.9E-131 T 13-10-2018 RAM_32020 b206851aedae032e3b8008c781559604 1116 Pfam PF00501 AMP-binding enzyme 512 904 6.1E-97 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_32020 b206851aedae032e3b8008c781559604 1116 Gene3D G3DSA:3.30.300.30 898 1001 1.3E-31 T 13-10-2018 RAM_32020 b206851aedae032e3b8008c781559604 1116 SUPERFAMILY SSF56801 473 1023 9.68E-153 T 13-10-2018 RAM_32020 b206851aedae032e3b8008c781559604 1116 Pfam PF00668 Condensation domain 49 488 5.4E-81 T 13-10-2018 IPR001242 Condensation domain RAM_32020 b206851aedae032e3b8008c781559604 1116 Pfam PF00550 Phosphopantetheine attachment site 1013 1075 7.9E-10 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_32020 b206851aedae032e3b8008c781559604 1116 Pfam PF13193 AMP-binding enzyme C-terminal domain 912 987 1.4E-11 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_32020 b206851aedae032e3b8008c781559604 1116 PIRSF PIRSF001617 234 618 5.6E-15 T 13-10-2018 RAM_32020 b206851aedae032e3b8008c781559604 1116 PIRSF PIRSF001617 611 803 1.5E-6 T 13-10-2018 RAM_32020 b206851aedae032e3b8008c781559604 1116 PIRSF PIRSF001617 953 1107 2.5E-18 T 13-10-2018 RAM_32020 b206851aedae032e3b8008c781559604 1116 PIRSF PIRSF001617 858 948 1.3E-12 T 13-10-2018 RAM_32020 b206851aedae032e3b8008c781559604 1116 SUPERFAMILY SSF52777 52 227 1.72E-45 T 13-10-2018 RAM_32020 b206851aedae032e3b8008c781559604 1116 SUPERFAMILY SSF52777 234 474 1.56E-58 T 13-10-2018 RAM_11895 d43401accbdacf8018e9cd0941debef2 262 SUPERFAMILY SSF100950 74 232 4.6E-29 T 13-10-2018 IPR037171 NagB/RpiA transferase-like RAM_11895 d43401accbdacf8018e9cd0941debef2 262 Pfam PF00455 DeoR C terminal sensor domain 74 232 2.0E-43 T 13-10-2018 IPR014036 DeoR C-terminal sensor domain RAM_11895 d43401accbdacf8018e9cd0941debef2 262 SMART SM00420 11 62 6.4E-10 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RAM_11895 d43401accbdacf8018e9cd0941debef2 262 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 42 60 2.6E-8 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RAM_11895 d43401accbdacf8018e9cd0941debef2 262 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 28 42 2.6E-8 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RAM_11895 d43401accbdacf8018e9cd0941debef2 262 ProSitePatterns PS00894 DeoR-type HTH domain signature. 11 44 - T 13-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 RAM_11895 d43401accbdacf8018e9cd0941debef2 262 SUPERFAMILY SSF46785 10 60 3.59E-9 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_11895 d43401accbdacf8018e9cd0941debef2 262 SMART SM01134 72 233 4.1E-64 T 13-10-2018 RAM_11895 d43401accbdacf8018e9cd0941debef2 262 Pfam PF08220 DeoR-like helix-turn-helix domain 21 60 2.4E-12 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RAM_12435 3010fda264866e05de86695dc22e5c3f 598 Gene3D G3DSA:3.40.50.12780 6 316 9.5E-56 T 13-10-2018 RAM_12435 3010fda264866e05de86695dc22e5c3f 598 SUPERFAMILY SSF56801 17 596 3.66E-115 T 13-10-2018 RAM_12435 3010fda264866e05de86695dc22e5c3f 598 ProSitePatterns PS00455 Putative AMP-binding domain signature. 185 196 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_12435 3010fda264866e05de86695dc22e5c3f 598 Gene3D G3DSA:3.40.50.12780 328 464 2.6E-37 T 13-10-2018 RAM_12435 3010fda264866e05de86695dc22e5c3f 598 Pfam PF00501 AMP-binding enzyme 23 466 1.6E-99 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_32625 44617ee4ce4cd30d1f8dafc618fefd52 1008 SUPERFAMILY SSF48452 721 892 1.71E-13 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_32625 44617ee4ce4cd30d1f8dafc618fefd52 1008 Pfam PF13424 Tetratricopeptide repeat 769 834 1.4E-8 T 13-10-2018 RAM_32625 44617ee4ce4cd30d1f8dafc618fefd52 1008 Pfam PF00931 NB-ARC domain 308 502 3.9E-9 T 13-10-2018 IPR002182 NB-ARC GO:0043531 Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-6798695|Reactome: R-HSA-6803207|Reactome: R-HSA-8953750 RAM_32625 44617ee4ce4cd30d1f8dafc618fefd52 1008 SMART SM00028 108 141 460.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_32625 44617ee4ce4cd30d1f8dafc618fefd52 1008 SMART SM00028 767 800 440.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_32625 44617ee4ce4cd30d1f8dafc618fefd52 1008 SMART SM00028 727 760 77.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_32625 44617ee4ce4cd30d1f8dafc618fefd52 1008 SMART SM00028 887 920 190.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_32625 44617ee4ce4cd30d1f8dafc618fefd52 1008 SMART SM00028 927 960 1.1 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_32625 44617ee4ce4cd30d1f8dafc618fefd52 1008 SMART SM00028 807 840 150.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_32625 44617ee4ce4cd30d1f8dafc618fefd52 1008 SUPERFAMILY SSF48452 894 974 9.49E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_32625 44617ee4ce4cd30d1f8dafc618fefd52 1008 SUPERFAMILY SSF46894 10 96 1.36E-7 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_32625 44617ee4ce4cd30d1f8dafc618fefd52 1008 PRINTS PR00364 Disease resistance protein signature 386 400 1.4E-7 T 13-10-2018 RAM_32625 44617ee4ce4cd30d1f8dafc618fefd52 1008 PRINTS PR00364 Disease resistance protein signature 473 487 1.4E-7 T 13-10-2018 RAM_32625 44617ee4ce4cd30d1f8dafc618fefd52 1008 PRINTS PR00364 Disease resistance protein signature 309 324 1.4E-7 T 13-10-2018 RAM_32625 44617ee4ce4cd30d1f8dafc618fefd52 1008 SMART SM01043 103 248 1.4E-4 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_32625 44617ee4ce4cd30d1f8dafc618fefd52 1008 Gene3D G3DSA:1.10.10.10 1 99 1.2E-13 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_32625 44617ee4ce4cd30d1f8dafc618fefd52 1008 Gene3D G3DSA:1.25.40.10 102 270 4.7E-13 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_32625 44617ee4ce4cd30d1f8dafc618fefd52 1008 SUPERFAMILY SSF52540 277 542 1.7E-27 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_32625 44617ee4ce4cd30d1f8dafc618fefd52 1008 Gene3D G3DSA:1.25.40.10 888 982 5.5E-8 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_32625 44617ee4ce4cd30d1f8dafc618fefd52 1008 SMART SM00862 18 96 0.0077 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_32625 44617ee4ce4cd30d1f8dafc618fefd52 1008 Gene3D G3DSA:1.25.40.10 710 887 2.3E-23 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_32625 44617ee4ce4cd30d1f8dafc618fefd52 1008 Gene3D G3DSA:3.40.50.300 271 434 4.0E-24 T 13-10-2018 RAM_32625 44617ee4ce4cd30d1f8dafc618fefd52 1008 Pfam PF03704 Bacterial transcriptional activator domain 103 248 1.5E-9 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_32625 44617ee4ce4cd30d1f8dafc618fefd52 1008 SUPERFAMILY SSF48452 98 253 1.1E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_45435 25914725c39a8b165b60e4e3e7232006 326 Pfam PF00149 Calcineurin-like phosphoesterase 57 241 1.4E-9 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 RAM_45435 25914725c39a8b165b60e4e3e7232006 326 SUPERFAMILY SSF56300 53 307 1.74E-26 T 13-10-2018 RAM_45435 25914725c39a8b165b60e4e3e7232006 326 Gene3D G3DSA:3.60.21.10 56 270 9.9E-14 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like RAM_35775 3eeaf32504da51ed92dfd0841449f173 130 SUPERFAMILY SSF54593 12 128 1.75E-19 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_35775 3eeaf32504da51ed92dfd0841449f173 130 Gene3D G3DSA:3.10.180.10 3 128 8.2E-21 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_35775 3eeaf32504da51ed92dfd0841449f173 130 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 12 123 1.5E-5 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RAM_08895 045bbd4df75bf0aa91726706d5ad6e61 524 SUPERFAMILY SSF101473 4 196 7.98E-32 T 13-10-2018 IPR036117 DhaL domain superfamily GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 RAM_08895 045bbd4df75bf0aa91726706d5ad6e61 524 Pfam PF02734 DAK2 domain 34 193 1.4E-30 T 13-10-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 RAM_08895 045bbd4df75bf0aa91726706d5ad6e61 524 SMART SM01121 216 524 3.2E-54 T 13-10-2018 IPR033470 Uncharacterised protein, DhaK domain RAM_08895 045bbd4df75bf0aa91726706d5ad6e61 524 Gene3D G3DSA:1.25.40.340 3 196 8.0E-7 T 13-10-2018 IPR036117 DhaL domain superfamily GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 RAM_08895 045bbd4df75bf0aa91726706d5ad6e61 524 Pfam PF13684 Dihydroxyacetone kinase family 217 524 2.5E-59 T 13-10-2018 IPR033470 Uncharacterised protein, DhaK domain RAM_08895 045bbd4df75bf0aa91726706d5ad6e61 524 SMART SM01120 34 194 4.6E-41 T 13-10-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 RAM_36495 c928b440657e541af5adaf4367f1bce8 180 Pfam PF13560 Helix-turn-helix domain 102 163 5.3E-7 T 13-10-2018 RAM_36495 c928b440657e541af5adaf4367f1bce8 180 SUPERFAMILY SSF46689 29 126 1.38E-6 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_36495 c928b440657e541af5adaf4367f1bce8 180 SMART SM00530 106 163 0.005 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_36495 c928b440657e541af5adaf4367f1bce8 180 Gene3D G3DSA:1.10.260.40 92 167 3.3E-8 T 13-10-2018 RAM_32775 09561d00b087527951efeb3d99385198 93 Gene3D G3DSA:2.60.40.10 2 90 1.6E-13 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_32775 09561d00b087527951efeb3d99385198 93 SUPERFAMILY SSF81296 22 85 1.26E-11 T 13-10-2018 IPR014756 Immunoglobulin E-set RAM_47950 6eb37a5f989af9c49ace790c34babf92 174 Pfam PF04542 Sigma-70 region 2 2 59 9.2E-15 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_47950 6eb37a5f989af9c49ace790c34babf92 174 Gene3D G3DSA:1.10.1740.10 1 63 7.9E-21 T 13-10-2018 RAM_47950 6eb37a5f989af9c49ace790c34babf92 174 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 2 143 9.0E-29 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_47950 6eb37a5f989af9c49ace790c34babf92 174 SUPERFAMILY SSF88946 2 70 2.94E-19 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_47950 6eb37a5f989af9c49ace790c34babf92 174 Gene3D G3DSA:1.10.10.10 68 147 8.7E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_47950 6eb37a5f989af9c49ace790c34babf92 174 SUPERFAMILY SSF88659 81 145 1.72E-16 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_47950 6eb37a5f989af9c49ace790c34babf92 174 Pfam PF08281 Sigma-70, region 4 89 140 2.3E-17 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_27050 a48920737f44f02874a6e07e3cec25ae 386 Gene3D G3DSA:2.40.110.10 122 237 7.5E-42 T 13-10-2018 RAM_27050 a48920737f44f02874a6e07e3cec25ae 386 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 123 221 4.6E-26 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RAM_27050 a48920737f44f02874a6e07e3cec25ae 386 Gene3D G3DSA:1.10.540.10 2 120 1.0E-37 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_27050 a48920737f44f02874a6e07e3cec25ae 386 SUPERFAMILY SSF47203 236 380 1.51E-37 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_27050 a48920737f44f02874a6e07e3cec25ae 386 SUPERFAMILY SSF56645 3 247 2.88E-79 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_27050 a48920737f44f02874a6e07e3cec25ae 386 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 236 379 3.0E-37 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_27050 a48920737f44f02874a6e07e3cec25ae 386 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 5 119 1.1E-32 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_27050 a48920737f44f02874a6e07e3cec25ae 386 Gene3D G3DSA:1.20.140.10 238 382 2.1E-36 T 13-10-2018 RAM_07765 04ebe04b032ef66062d9529b81873f06 523 SUPERFAMILY SSF56300 155 496 2.87E-27 T 13-10-2018 RAM_07765 04ebe04b032ef66062d9529b81873f06 523 Gene3D G3DSA:2.60.40.380 39 148 1.0E-37 T 13-10-2018 IPR008963 Purple acid phosphatase-like, N-terminal GO:0003993|GO:0046872 RAM_07765 04ebe04b032ef66062d9529b81873f06 523 Gene3D G3DSA:3.60.21.70 149 523 5.3E-119 T 13-10-2018 IPR038607 PhoD-like superfamily RAM_07765 04ebe04b032ef66062d9529b81873f06 523 Pfam PF09423 PhoD-like phosphatase 160 489 1.0E-96 T 13-10-2018 IPR018946 Alkaline phosphatase D-related RAM_07765 04ebe04b032ef66062d9529b81873f06 523 Pfam PF16655 PhoD-like phosphatase, N-terminal domain 47 145 3.7E-31 T 13-10-2018 IPR032093 Phospholipase D, N-terminal RAM_04405 83dd5adab3de123de7ad6db2c6bdfef5 404 SUPERFAMILY SSF103473 16 397 1.7E-60 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_04405 83dd5adab3de123de7ad6db2c6bdfef5 404 Gene3D G3DSA:1.20.1250.20 14 207 3.0E-28 T 13-10-2018 RAM_04405 83dd5adab3de123de7ad6db2c6bdfef5 404 Gene3D G3DSA:1.20.1250.20 218 402 7.6E-27 T 13-10-2018 RAM_04405 83dd5adab3de123de7ad6db2c6bdfef5 404 Pfam PF07690 Major Facilitator Superfamily 39 366 2.5E-41 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_25635 bcb301befdb4a02c6813919de807e704 345 SUPERFAMILY SSF81345 19 340 3.14E-80 T 13-10-2018 IPR037294 ABC transporter, BtuC-like RAM_25635 bcb301befdb4a02c6813919de807e704 345 Pfam PF01032 FecCD transport family 30 339 7.8E-91 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 RAM_25635 bcb301befdb4a02c6813919de807e704 345 Gene3D G3DSA:1.10.3470.10 18 343 4.8E-94 T 13-10-2018 IPR037294 ABC transporter, BtuC-like RAM_31805 67968632116a7a5576cdf9d2d31c9198 456 Pfam PF00931 NB-ARC domain 37 297 1.6E-14 T 13-10-2018 IPR002182 NB-ARC GO:0043531 Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-6798695|Reactome: R-HSA-6803207|Reactome: R-HSA-8953750 RAM_31805 67968632116a7a5576cdf9d2d31c9198 456 SUPERFAMILY SSF52540 11 286 1.27E-30 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_31805 67968632116a7a5576cdf9d2d31c9198 456 PRINTS PR00364 Disease resistance protein signature 216 230 2.9E-7 T 13-10-2018 RAM_31805 67968632116a7a5576cdf9d2d31c9198 456 PRINTS PR00364 Disease resistance protein signature 129 143 2.9E-7 T 13-10-2018 RAM_31805 67968632116a7a5576cdf9d2d31c9198 456 PRINTS PR00364 Disease resistance protein signature 51 66 2.9E-7 T 13-10-2018 RAM_31805 67968632116a7a5576cdf9d2d31c9198 456 Gene3D G3DSA:3.40.50.300 13 170 1.2E-29 T 13-10-2018 RAM_03200 b2412f15eee67bc0403565e8d0e71b40 263 Gene3D G3DSA:3.40.50.720 109 248 1.9E-65 T 13-10-2018 RAM_03200 b2412f15eee67bc0403565e8d0e71b40 263 Gene3D G3DSA:3.40.50.10860 7 108 1.9E-65 T 13-10-2018 RAM_03200 b2412f15eee67bc0403565e8d0e71b40 263 SUPERFAMILY SSF53223 1 107 8.63E-23 T 13-10-2018 RAM_03200 b2412f15eee67bc0403565e8d0e71b40 263 SUPERFAMILY SSF51735 109 252 2.25E-30 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_03200 b2412f15eee67bc0403565e8d0e71b40 263 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 12 94 2.0E-13 T 13-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 RAM_01745 4a21c6bb9a73d77f8e793e62ea79859c 71 Gene3D G3DSA:3.30.70.100 5 63 2.3E-13 T 13-10-2018 RAM_01745 4a21c6bb9a73d77f8e793e62ea79859c 71 SUPERFAMILY SSF55008 2 64 3.27E-12 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 RAM_01745 4a21c6bb9a73d77f8e793e62ea79859c 71 Pfam PF00403 Heavy-metal-associated domain 8 61 5.1E-10 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 RAM_38845 c0cbe21754d8c81ad1a046629486feb6 552 PIRSF PIRSF000137 1 540 1.1E-147 T 13-10-2018 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 RAM_38845 c0cbe21754d8c81ad1a046629486feb6 552 Gene3D G3DSA:4.10.450.10 39 202 1.8E-177 T 13-10-2018 IPR027424 Glucose Oxidase, domain 2 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|Reactome: R-HSA-6798163 RAM_38845 c0cbe21754d8c81ad1a046629486feb6 552 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 260 274 - T 13-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 RAM_38845 c0cbe21754d8c81ad1a046629486feb6 552 TIGRFAM TIGR01810 betA: choline dehydrogenase 7 539 2.2E-257 T 13-10-2018 IPR011533 Oxygen-dependent choline dehydrogenase GO:0008812|GO:0019285 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494 RAM_38845 c0cbe21754d8c81ad1a046629486feb6 552 Gene3D G3DSA:1.10.1220.110 100 156 1.8E-177 T 13-10-2018 RAM_38845 c0cbe21754d8c81ad1a046629486feb6 552 SUPERFAMILY SSF54373 296 478 4.02E-59 T 13-10-2018 RAM_38845 c0cbe21754d8c81ad1a046629486feb6 552 SUPERFAMILY SSF51905 2 537 1.05E-86 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_38845 c0cbe21754d8c81ad1a046629486feb6 552 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 85 108 - T 13-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 RAM_38845 c0cbe21754d8c81ad1a046629486feb6 552 Gene3D G3DSA:3.50.50.60 6 533 1.8E-177 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_38845 c0cbe21754d8c81ad1a046629486feb6 552 Gene3D G3DSA:3.30.410.40 157 475 1.8E-177 T 13-10-2018 RAM_38845 c0cbe21754d8c81ad1a046629486feb6 552 Pfam PF05199 GMC oxidoreductase 394 529 5.2E-38 T 13-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 RAM_38845 c0cbe21754d8c81ad1a046629486feb6 552 Pfam PF00732 GMC oxidoreductase 6 301 4.6E-89 T 13-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 RAM_38985 0535044bff6777e2848844fdea931b4d 258 SMART SM00418 3 78 9.6E-15 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_38985 0535044bff6777e2848844fdea931b4d 258 Gene3D G3DSA:3.30.530.20 105 258 3.4E-35 T 13-10-2018 IPR023393 START-like domain superfamily RAM_38985 0535044bff6777e2848844fdea931b4d 258 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 114 252 1.2E-22 T 13-10-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like RAM_38985 0535044bff6777e2848844fdea931b4d 258 SUPERFAMILY SSF46785 1 99 3.06E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_38985 0535044bff6777e2848844fdea931b4d 258 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 5 20 4.4E-8 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_38985 0535044bff6777e2848844fdea931b4d 258 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 38 53 4.4E-8 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_38985 0535044bff6777e2848844fdea931b4d 258 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 53 68 4.4E-8 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_38985 0535044bff6777e2848844fdea931b4d 258 Gene3D G3DSA:1.10.10.10 1 104 2.3E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_38985 0535044bff6777e2848844fdea931b4d 258 SUPERFAMILY SSF55961 102 257 2.98E-28 T 13-10-2018 RAM_38985 0535044bff6777e2848844fdea931b4d 258 Pfam PF12840 Helix-turn-helix domain 2 62 3.2E-17 T 13-10-2018 RAM_12825 4204db2ce7c95ed2162c8e3ac4a5de88 281 PRINTS PR00111 Alpha/beta hydrolase fold signature 224 238 3.1E-20 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_12825 4204db2ce7c95ed2162c8e3ac4a5de88 281 PRINTS PR00111 Alpha/beta hydrolase fold signature 100 113 3.1E-20 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_12825 4204db2ce7c95ed2162c8e3ac4a5de88 281 PRINTS PR00111 Alpha/beta hydrolase fold signature 55 70 3.1E-20 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_12825 4204db2ce7c95ed2162c8e3ac4a5de88 281 PRINTS PR00111 Alpha/beta hydrolase fold signature 114 127 3.1E-20 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_12825 4204db2ce7c95ed2162c8e3ac4a5de88 281 Gene3D G3DSA:3.40.50.1820 4 279 1.7E-85 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_12825 4204db2ce7c95ed2162c8e3ac4a5de88 281 SUPERFAMILY SSF53474 5 278 2.11E-65 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_12825 4204db2ce7c95ed2162c8e3ac4a5de88 281 Pfam PF00561 alpha/beta hydrolase fold 29 267 4.5E-25 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_07790 16a6568c0d408eb409637573c98c7686 384 SUPERFAMILY SSF46785 9 68 3.75E-7 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_07790 16a6568c0d408eb409637573c98c7686 384 SUPERFAMILY SSF53067 75 369 1.4E-48 T 13-10-2018 RAM_07790 16a6568c0d408eb409637573c98c7686 384 ProSitePatterns PS01125 ROK family signature. 205 232 - T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 RAM_07790 16a6568c0d408eb409637573c98c7686 384 Gene3D G3DSA:1.10.10.10 9 67 4.5E-10 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_07790 16a6568c0d408eb409637573c98c7686 384 Gene3D G3DSA:3.30.420.40 195 353 8.2E-74 T 13-10-2018 RAM_07790 16a6568c0d408eb409637573c98c7686 384 Gene3D G3DSA:3.30.420.40 81 362 8.2E-74 T 13-10-2018 RAM_07790 16a6568c0d408eb409637573c98c7686 384 Pfam PF00480 ROK family 82 367 3.8E-46 T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 RAM_37775 1abda3c8d3e56157cd31224deaf00c82 2257 Pfam PF07591 Pretoxin HINT domain 1960 2094 1.2E-14 T 13-10-2018 RAM_37775 1abda3c8d3e56157cd31224deaf00c82 2257 Pfam PF05593 RHS Repeat 1614 1650 5.4E-6 T 13-10-2018 IPR031325 RHS repeat RAM_37775 1abda3c8d3e56157cd31224deaf00c82 2257 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 1737 1816 1.3E-16 T 13-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 RAM_37775 1abda3c8d3e56157cd31224deaf00c82 2257 SUPERFAMILY SSF51294 1948 2092 1.68E-14 T 13-10-2018 IPR036844 Hint domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 RAM_37775 1abda3c8d3e56157cd31224deaf00c82 2257 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1252 1281 0.0011 T 13-10-2018 IPR006530 YD repeat RAM_37775 1abda3c8d3e56157cd31224deaf00c82 2257 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1285 1315 3.0E-5 T 13-10-2018 IPR006530 YD repeat RAM_37775 1abda3c8d3e56157cd31224deaf00c82 2257 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1634 1669 3.5E-4 T 13-10-2018 IPR006530 YD repeat RAM_37775 1abda3c8d3e56157cd31224deaf00c82 2257 Gene3D G3DSA:2.170.16.10 1949 2093 1.2E-34 T 13-10-2018 RAM_37775 1abda3c8d3e56157cd31224deaf00c82 2257 SMART SM00306 1950 2051 0.0043 T 13-10-2018 IPR003587 Hint domain N-terminal Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 RAM_37775 1abda3c8d3e56157cd31224deaf00c82 2257 Gene3D G3DSA:2.180.10.10 1201 1816 1.7E-39 T 13-10-2018 RAM_18930 b17eb72179d1987410577752f486333a 297 Gene3D G3DSA:3.30.450.180 115 290 1.4E-10 T 13-10-2018 RAM_18930 b17eb72179d1987410577752f486333a 297 Gene3D G3DSA:1.10.260.40 24 102 2.7E-6 T 13-10-2018 RAM_18930 b17eb72179d1987410577752f486333a 297 SUPERFAMILY SSF47413 33 83 7.36E-6 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_18930 b17eb72179d1987410577752f486333a 297 Pfam PF13560 Helix-turn-helix domain 33 87 8.4E-12 T 13-10-2018 RAM_13990 58dc58161e4247dfc7b31b32a06e412e 1104 Gene3D G3DSA:1.10.1030.10 410 551 5.0E-39 T 13-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RAM_13990 58dc58161e4247dfc7b31b32a06e412e 1104 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 1077 0.0 T 13-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RAM_13990 58dc58161e4247dfc7b31b32a06e412e 1104 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 1.4E-59 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RAM_13990 58dc58161e4247dfc7b31b32a06e412e 1104 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 1.4E-59 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RAM_13990 58dc58161e4247dfc7b31b32a06e412e 1104 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 297 326 1.4E-59 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RAM_13990 58dc58161e4247dfc7b31b32a06e412e 1104 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 204 223 1.4E-59 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RAM_13990 58dc58161e4247dfc7b31b32a06e412e 1104 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 379 397 1.4E-59 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RAM_13990 58dc58161e4247dfc7b31b32a06e412e 1104 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 239 256 1.4E-59 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RAM_13990 58dc58161e4247dfc7b31b32a06e412e 1104 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 168 180 1.4E-59 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RAM_13990 58dc58161e4247dfc7b31b32a06e412e 1104 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 334 1.2E-67 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RAM_13990 58dc58161e4247dfc7b31b32a06e412e 1104 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 680 881 4.0E-32 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RAM_13990 58dc58161e4247dfc7b31b32a06e412e 1104 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 425 545 3.9E-37 T 13-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RAM_13990 58dc58161e4247dfc7b31b32a06e412e 1104 Gene3D G3DSA:3.40.50.20 1 116 1.5E-47 T 13-10-2018 RAM_13990 58dc58161e4247dfc7b31b32a06e412e 1104 SUPERFAMILY SSF52440 560 681 3.31E-44 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RAM_13990 58dc58161e4247dfc7b31b32a06e412e 1104 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 297 304 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RAM_13990 58dc58161e4247dfc7b31b32a06e412e 1104 Pfam PF02142 MGS-like domain 978 1068 2.4E-22 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain RAM_13990 58dc58161e4247dfc7b31b32a06e412e 1104 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 845 852 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RAM_13990 58dc58161e4247dfc7b31b32a06e412e 1104 Gene3D G3DSA:3.30.470.20 120 402 2.9E-118 T 13-10-2018 RAM_13990 58dc58161e4247dfc7b31b32a06e412e 1104 SUPERFAMILY SSF56059 128 400 3.54E-102 T 13-10-2018 RAM_13990 58dc58161e4247dfc7b31b32a06e412e 1104 SUPERFAMILY SSF52440 1 127 2.16E-46 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RAM_13990 58dc58161e4247dfc7b31b32a06e412e 1104 Gene3D G3DSA:3.30.470.20 672 957 2.8E-103 T 13-10-2018 RAM_13990 58dc58161e4247dfc7b31b32a06e412e 1104 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1089 12.937 T 13-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RAM_13990 58dc58161e4247dfc7b31b32a06e412e 1104 Gene3D G3DSA:3.40.50.20 557 669 7.7E-46 T 13-10-2018 RAM_13990 58dc58161e4247dfc7b31b32a06e412e 1104 SMART SM01096 422 545 2.5E-59 T 13-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RAM_13990 58dc58161e4247dfc7b31b32a06e412e 1104 SMART SM00851 977 1068 1.5E-34 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain RAM_13990 58dc58161e4247dfc7b31b32a06e412e 1104 SUPERFAMILY SSF52335 964 1097 1.44E-37 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily RAM_13990 58dc58161e4247dfc7b31b32a06e412e 1104 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 716 730 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RAM_13990 58dc58161e4247dfc7b31b32a06e412e 1104 Gene3D G3DSA:3.40.50.1380 958 1101 5.8E-43 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily RAM_13990 58dc58161e4247dfc7b31b32a06e412e 1104 SUPERFAMILY SSF56059 680 954 8.13E-93 T 13-10-2018 RAM_13990 58dc58161e4247dfc7b31b32a06e412e 1104 SUPERFAMILY SSF48108 396 551 1.96E-41 T 13-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RAM_36940 d8bbbf5ee4094bf371be4b82e353df9d 211 Pfam PF00378 Enoyl-CoA hydratase/isomerase 9 208 2.2E-38 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RAM_36940 d8bbbf5ee4094bf371be4b82e353df9d 211 SUPERFAMILY SSF52096 3 210 2.31E-61 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_36940 d8bbbf5ee4094bf371be4b82e353df9d 211 Gene3D G3DSA:3.90.226.10 1 196 1.6E-63 T 13-10-2018 RAM_36940 d8bbbf5ee4094bf371be4b82e353df9d 211 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 95 115 - T 13-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 RAM_40695 7aa18f47a901bb3afe6654739dacf2d5 171 SUPERFAMILY SSF82607 14 97 2.75E-9 T 13-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily RAM_40695 7aa18f47a901bb3afe6654739dacf2d5 171 Gene3D G3DSA:3.30.1310.10 4 104 7.9E-8 T 13-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily RAM_40695 7aa18f47a901bb3afe6654739dacf2d5 171 Pfam PF02575 YbaB/EbfC DNA-binding family 14 97 8.0E-13 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family RAM_29580 6004a2b24f3e931cc81e95dd941b6c92 143 Pfam PF13546 DDE superfamily endonuclease 3 122 7.7E-44 T 13-10-2018 IPR038721 Transposase IS701-like, DDE domain RAM_00980 5dc3355bffea4ec97633d3474e7dd937 394 Gene3D G3DSA:1.10.287.40 1 77 5.0E-12 T 13-10-2018 RAM_00980 5dc3355bffea4ec97633d3474e7dd937 394 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 2 80 3.9E-13 T 13-10-2018 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: R-HSA-2408557|Reactome: R-HSA-379716 RAM_00980 5dc3355bffea4ec97633d3474e7dd937 394 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 193 368 7.2E-25 T 13-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 RAM_00980 5dc3355bffea4ec97633d3474e7dd937 394 SUPERFAMILY SSF46589 2 85 3.71E-16 T 13-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 RAM_00980 5dc3355bffea4ec97633d3474e7dd937 394 PIRSF PIRSF001529 1 394 8.2E-136 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 RAM_00980 5dc3355bffea4ec97633d3474e7dd937 394 Gene3D G3DSA:3.30.930.10 78 393 2.4E-119 T 13-10-2018 RAM_00980 5dc3355bffea4ec97633d3474e7dd937 394 TIGRFAM TIGR00414 serS: serine--tRNA ligase 2 385 1.1E-126 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 RAM_00980 5dc3355bffea4ec97633d3474e7dd937 394 PRINTS PR00981 Seryl-tRNA synthetase signature 246 259 7.2E-31 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 RAM_00980 5dc3355bffea4ec97633d3474e7dd937 394 PRINTS PR00981 Seryl-tRNA synthetase signature 286 299 7.2E-31 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 RAM_00980 5dc3355bffea4ec97633d3474e7dd937 394 PRINTS PR00981 Seryl-tRNA synthetase signature 234 246 7.2E-31 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 RAM_00980 5dc3355bffea4ec97633d3474e7dd937 394 PRINTS PR00981 Seryl-tRNA synthetase signature 321 337 7.2E-31 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 RAM_00980 5dc3355bffea4ec97633d3474e7dd937 394 PRINTS PR00981 Seryl-tRNA synthetase signature 303 319 7.2E-31 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 RAM_00980 5dc3355bffea4ec97633d3474e7dd937 394 SUPERFAMILY SSF55681 87 389 2.49E-86 T 13-10-2018 RAM_15350 ecba41e2f311cae7e4a4ec93f0d1b696 224 Pfam PF07729 FCD domain 91 211 6.1E-24 T 13-10-2018 IPR011711 GntR, C-terminal RAM_15350 ecba41e2f311cae7e4a4ec93f0d1b696 224 Gene3D G3DSA:1.10.10.10 2 79 6.6E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_15350 ecba41e2f311cae7e4a4ec93f0d1b696 224 Gene3D G3DSA:1.20.120.530 86 223 2.4E-24 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_15350 ecba41e2f311cae7e4a4ec93f0d1b696 224 SUPERFAMILY SSF48008 92 220 5.75E-20 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_15350 ecba41e2f311cae7e4a4ec93f0d1b696 224 SUPERFAMILY SSF46785 12 82 3.02E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_15350 ecba41e2f311cae7e4a4ec93f0d1b696 224 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 78 2.2E-14 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_15350 ecba41e2f311cae7e4a4ec93f0d1b696 224 SMART SM00895 88 214 6.5E-12 T 13-10-2018 IPR011711 GntR, C-terminal RAM_15350 ecba41e2f311cae7e4a4ec93f0d1b696 224 SMART SM00345 20 78 2.9E-10 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_13955 dce860de73d770999076bd64f6d0bec1 204 Pfam PF00156 Phosphoribosyl transferase domain 16 161 1.7E-20 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 RAM_13955 dce860de73d770999076bd64f6d0bec1 204 Hamap MF_01219 Bifunctional protein PyrR [pyrR]. 14 191 35.271 T 13-10-2018 IPR023050 Bifunctional protein PyrR KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 RAM_13955 dce860de73d770999076bd64f6d0bec1 204 SUPERFAMILY SSF53271 16 185 2.49E-41 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like RAM_13955 dce860de73d770999076bd64f6d0bec1 204 Gene3D G3DSA:3.40.50.2020 5 194 1.1E-62 T 13-10-2018 RAM_03555 cc4070f9af1887e08005583e1a046fa6 148 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 29 146 2.7E-30 T 13-10-2018 IPR021131 Ribosomal protein L18e/L15P RAM_03555 cc4070f9af1887e08005583e1a046fa6 148 SUPERFAMILY SSF52080 9 147 1.96E-37 T 13-10-2018 IPR036227 Ribosomal L18e/L15P superfamily RAM_03555 cc4070f9af1887e08005583e1a046fa6 148 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 5 145 8.5E-42 T 13-10-2018 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_03555 cc4070f9af1887e08005583e1a046fa6 148 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 6 148 19.273 T 13-10-2018 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 RAM_03555 cc4070f9af1887e08005583e1a046fa6 148 Gene3D G3DSA:3.100.10.10 68 147 3.0E-20 T 13-10-2018 RAM_03555 cc4070f9af1887e08005583e1a046fa6 148 ProSitePatterns PS00475 Ribosomal protein L15 signature. 111 142 - T 13-10-2018 IPR001196 Ribosomal protein L15, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_00355 f176ec6cf40ee24232518634bd20f2bb 257 SMART SM00382 30 223 2.8E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_00355 f176ec6cf40ee24232518634bd20f2bb 257 SUPERFAMILY SSF52540 3 237 1.43E-71 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_00355 f176ec6cf40ee24232518634bd20f2bb 257 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_00355 f176ec6cf40ee24232518634bd20f2bb 257 Pfam PF00005 ABC transporter 21 165 6.7E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_00355 f176ec6cf40ee24232518634bd20f2bb 257 Gene3D G3DSA:3.40.50.300 1 256 2.4E-85 T 13-10-2018 RAM_33940 e6d1814262d256b94669ee129bf284cc 292 SUPERFAMILY SSF50249 3 80 1.27E-21 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_33940 e6d1814262d256b94669ee129bf284cc 292 Pfam PF11967 Recombination protein O N terminal 4 80 1.2E-27 T 13-10-2018 IPR022572 DNA replication/recombination mediator RecO, N-terminal RAM_33940 e6d1814262d256b94669ee129bf284cc 292 SUPERFAMILY SSF57863 84 233 1.78E-38 T 13-10-2018 IPR037278 ARFGAP/RecO-like zinc finger RAM_33940 e6d1814262d256b94669ee129bf284cc 292 Hamap MF_00201 DNA repair protein RecO [recO]. 3 244 27.16 T 13-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 RAM_33940 e6d1814262d256b94669ee129bf284cc 292 Gene3D G3DSA:2.40.50.140 2 83 3.0E-30 T 13-10-2018 RAM_33940 e6d1814262d256b94669ee129bf284cc 292 TIGRFAM TIGR00613 reco: DNA repair protein RecO 6 201 4.2E-41 T 13-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 RAM_33940 e6d1814262d256b94669ee129bf284cc 292 Pfam PF02565 Recombination protein O C terminal 87 239 4.8E-32 T 13-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 RAM_18760 8649b5405f275075ffb3f6ad794ab9d7 484 Gene3D G3DSA:3.30.300.30 300 402 2.3E-22 T 13-10-2018 RAM_18760 8649b5405f275075ffb3f6ad794ab9d7 484 Pfam PF00550 Phosphopantetheine attachment site 415 475 8.5E-10 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_18760 8649b5405f275075ffb3f6ad794ab9d7 484 Pfam PF00501 AMP-binding enzyme 40 305 1.7E-66 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_18760 8649b5405f275075ffb3f6ad794ab9d7 484 SUPERFAMILY SSF47336 412 476 2.62E-11 T 13-10-2018 IPR036736 ACP-like superfamily RAM_18760 8649b5405f275075ffb3f6ad794ab9d7 484 ProSitePatterns PS00012 Phosphopantetheine attachment site. 435 450 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_18760 8649b5405f275075ffb3f6ad794ab9d7 484 ProSitePatterns PS00455 Putative AMP-binding domain signature. 50 61 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_18760 8649b5405f275075ffb3f6ad794ab9d7 484 Gene3D G3DSA:3.40.50.12780 4 299 1.1E-90 T 13-10-2018 RAM_18760 8649b5405f275075ffb3f6ad794ab9d7 484 SUPERFAMILY SSF56801 32 398 3.53E-94 T 13-10-2018 RAM_18760 8649b5405f275075ffb3f6ad794ab9d7 484 Gene3D G3DSA:1.10.1200.10 403 481 1.4E-15 T 13-10-2018 IPR036736 ACP-like superfamily RAM_40755 1e1a6de502e0d7a4e66fe82d9c6d9723 434 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 203 217 - T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 RAM_40755 1e1a6de502e0d7a4e66fe82d9c6d9723 434 PIRSF PIRSF001434 1 431 3.0E-129 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 RAM_40755 1e1a6de502e0d7a4e66fe82d9c6d9723 434 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 10 427 6.6E-141 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 RAM_40755 1e1a6de502e0d7a4e66fe82d9c6d9723 434 SUPERFAMILY SSF53383 7 427 1.5E-120 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_40755 1e1a6de502e0d7a4e66fe82d9c6d9723 434 Gene3D G3DSA:3.40.640.10 8 292 2.7E-102 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_40755 1e1a6de502e0d7a4e66fe82d9c6d9723 434 Gene3D G3DSA:3.90.1150.10 296 434 5.2E-51 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_40755 1e1a6de502e0d7a4e66fe82d9c6d9723 434 TIGRFAM TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase 9 427 1.3E-198 T 13-10-2018 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 RAM_42735 c02526aeffdadfbe62f5856472b39622 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 270 284 5.7E-10 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_42735 c02526aeffdadfbe62f5856472b39622 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 309 327 5.7E-10 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_42735 c02526aeffdadfbe62f5856472b39622 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 332 345 5.7E-10 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_42735 c02526aeffdadfbe62f5856472b39622 349 Pfam PF00512 His Kinase A (phospho-acceptor) domain 121 188 6.8E-16 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_42735 c02526aeffdadfbe62f5856472b39622 349 SUPERFAMILY SSF47384 109 188 3.53E-17 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RAM_42735 c02526aeffdadfbe62f5856472b39622 349 SUPERFAMILY SSF55874 178 346 3.27E-36 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_42735 c02526aeffdadfbe62f5856472b39622 349 Gene3D G3DSA:3.30.565.10 185 347 7.6E-32 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_42735 c02526aeffdadfbe62f5856472b39622 349 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 236 347 4.8E-18 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_42735 c02526aeffdadfbe62f5856472b39622 349 Gene3D G3DSA:1.10.287.130 114 184 6.3E-17 T 13-10-2018 RAM_42735 c02526aeffdadfbe62f5856472b39622 349 SMART SM00387 233 348 4.0E-25 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_42735 c02526aeffdadfbe62f5856472b39622 349 SMART SM00388 121 188 5.9E-16 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_27570 094b9e24a738bdc0ef6c4003135ccb5e 382 Gene3D G3DSA:3.40.50.150 156 375 1.7E-75 T 13-10-2018 RAM_27570 094b9e24a738bdc0ef6c4003135ccb5e 382 SUPERFAMILY SSF53335 178 314 1.06E-21 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_27570 094b9e24a738bdc0ef6c4003135ccb5e 382 Gene3D G3DSA:3.30.1050.30 8 155 6.2E-23 T 13-10-2018 RAM_13830 13d34e90f837b744d6cc1db57bffc61a 421 Pfam PF12146 Serine aminopeptidase, S33 173 361 2.0E-6 T 13-10-2018 IPR022742 Serine aminopeptidase, S33 RAM_13830 13d34e90f837b744d6cc1db57bffc61a 421 SUPERFAMILY SSF53474 111 417 9.99E-28 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_13830 13d34e90f837b744d6cc1db57bffc61a 421 Gene3D G3DSA:3.40.50.1820 133 412 3.7E-30 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_41635 c80fe3004d2a8e80708a040d222af095 385 SUPERFAMILY SSF53383 12 384 3.54E-120 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_41635 c80fe3004d2a8e80708a040d222af095 385 Gene3D G3DSA:3.90.1150.10 256 385 7.8E-49 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_41635 c80fe3004d2a8e80708a040d222af095 385 Gene3D G3DSA:3.40.640.10 3 255 2.9E-101 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_41635 c80fe3004d2a8e80708a040d222af095 385 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 11 384 1.8E-145 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 RAM_41635 c80fe3004d2a8e80708a040d222af095 385 PIRSF PIRSF001434 3 385 4.8E-144 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 RAM_18350 a439c9dbcd2dea2fa9606ad826ed4965 245 SUPERFAMILY SSF51735 5 230 2.72E-62 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_18350 a439c9dbcd2dea2fa9606ad826ed4965 245 Pfam PF00106 short chain dehydrogenase 6 196 9.8E-50 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18350 a439c9dbcd2dea2fa9606ad826ed4965 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 8.5E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18350 a439c9dbcd2dea2fa9606ad826ed4965 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 8.5E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18350 a439c9dbcd2dea2fa9606ad826ed4965 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 8.5E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18350 a439c9dbcd2dea2fa9606ad826ed4965 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 8.5E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18350 a439c9dbcd2dea2fa9606ad826ed4965 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 8.5E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18350 a439c9dbcd2dea2fa9606ad826ed4965 245 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_18350 a439c9dbcd2dea2fa9606ad826ed4965 245 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 189 0.0028 T 13-10-2018 RAM_18350 a439c9dbcd2dea2fa9606ad826ed4965 245 Gene3D G3DSA:3.40.50.720 4 245 1.2E-64 T 13-10-2018 RAM_08880 bde65b401992b6dba965e174799e2121 225 SMART SM00986 53 212 5.9E-35 T 13-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 RAM_08880 bde65b401992b6dba965e174799e2121 225 ProSitePatterns PS00130 Uracil-DNA glycosylase signature. 61 70 - T 13-10-2018 IPR018085 Uracil-DNA glycosylase, active site GO:0006281|GO:0016799 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 RAM_08880 bde65b401992b6dba965e174799e2121 225 Pfam PF03167 Uracil DNA glycosylase superfamily 55 211 2.9E-19 T 13-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 RAM_08880 bde65b401992b6dba965e174799e2121 225 Gene3D G3DSA:3.40.470.10 1 225 1.4E-89 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 RAM_08880 bde65b401992b6dba965e174799e2121 225 Hamap MF_00148 Uracil-DNA glycosylase [ung]. 11 223 34.684 T 13-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 RAM_08880 bde65b401992b6dba965e174799e2121 225 SMART SM00987 53 212 5.9E-35 T 13-10-2018 RAM_08880 bde65b401992b6dba965e174799e2121 225 SUPERFAMILY SSF52141 9 223 7.41E-76 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 RAM_08880 bde65b401992b6dba965e174799e2121 225 TIGRFAM TIGR00628 ung: uracil-DNA glycosylase 13 216 1.0E-59 T 13-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 RAM_26415 2eda3b1a67c432ccc19a7c3be81a5682 392 SUPERFAMILY SSF49384 29 131 1.67E-29 T 13-10-2018 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily GO:0030246 RAM_26415 2eda3b1a67c432ccc19a7c3be81a5682 392 ProSitePatterns PS00561 CBM2a (carbohydrate-binding type-2) domain signature. 78 91 - T 13-10-2018 IPR018366 Carbohydrate-binding type-2, conserved site GO:0004553|GO:0005975|GO:0030246 RAM_26415 2eda3b1a67c432ccc19a7c3be81a5682 392 Gene3D G3DSA:2.60.40.290 27 132 7.5E-35 T 13-10-2018 IPR012291 CBM2, carbohydrate-binding domain superfamily GO:0004553|GO:0030247 RAM_26415 2eda3b1a67c432ccc19a7c3be81a5682 392 Gene3D G3DSA:2.60.120.200 171 392 3.1E-67 T 13-10-2018 RAM_26415 2eda3b1a67c432ccc19a7c3be81a5682 392 SMART SM00637 33 131 4.9E-45 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_26415 2eda3b1a67c432ccc19a7c3be81a5682 392 Pfam PF00553 Cellulose binding domain 33 131 2.0E-29 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_18640 7ecc99bf3718019fde68b88102b29ae1 1104 Gene3D G3DSA:3.40.50.880 663 958 2.7E-7 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_18640 7ecc99bf3718019fde68b88102b29ae1 1104 Gene3D G3DSA:2.60.120.560 181 317 4.6E-12 T 13-10-2018 RAM_18640 7ecc99bf3718019fde68b88102b29ae1 1104 SUPERFAMILY SSF49785 970 1092 1.98E-18 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_18640 7ecc99bf3718019fde68b88102b29ae1 1104 Gene3D G3DSA:2.60.120.260 960 1093 1.3E-17 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_18640 7ecc99bf3718019fde68b88102b29ae1 1104 Pfam PF17132 alpha-L-rhamnosidase 496 874 1.1E-11 T 13-10-2018 IPR033400 Alpha-L-rhamnosidase RhaM RAM_26990 25f410fc729808eec31fd070bc021ad4 131 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 4 81 6.1E-19 T 13-10-2018 IPR003849 Preprotein translocase YajC RAM_26990 25f410fc729808eec31fd070bc021ad4 131 SMART SM01323 2 81 1.5E-24 T 13-10-2018 IPR003849 Preprotein translocase YajC RAM_26990 25f410fc729808eec31fd070bc021ad4 131 Pfam PF02699 Preprotein translocase subunit 4 78 8.4E-21 T 13-10-2018 IPR003849 Preprotein translocase YajC RAM_07095 3aa99900a27c1ce01fb43c5866b81576 464 Gene3D G3DSA:1.20.1250.20 259 452 1.5E-20 T 13-10-2018 RAM_07095 3aa99900a27c1ce01fb43c5866b81576 464 SUPERFAMILY SSF103473 12 450 5.76E-62 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_07095 3aa99900a27c1ce01fb43c5866b81576 464 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 15 420 3.4E-76 T 13-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 RAM_07095 3aa99900a27c1ce01fb43c5866b81576 464 Gene3D G3DSA:1.20.1720.10 15 222 5.6E-52 T 13-10-2018 RAM_07095 3aa99900a27c1ce01fb43c5866b81576 464 Pfam PF07690 Major Facilitator Superfamily 18 410 5.2E-49 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_07095 3aa99900a27c1ce01fb43c5866b81576 464 PRINTS PR01036 Tetracycline resistance protein TetB signature 107 127 1.0E-5 T 13-10-2018 RAM_07095 3aa99900a27c1ce01fb43c5866b81576 464 PRINTS PR01036 Tetracycline resistance protein TetB signature 137 161 1.0E-5 T 13-10-2018 RAM_07095 3aa99900a27c1ce01fb43c5866b81576 464 PRINTS PR01036 Tetracycline resistance protein TetB signature 401 420 1.0E-5 T 13-10-2018 RAM_07095 3aa99900a27c1ce01fb43c5866b81576 464 PRINTS PR01036 Tetracycline resistance protein TetB signature 17 41 1.0E-5 T 13-10-2018 RAM_18950 c1172348b5c26b839894e0f214dd05a7 203 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 90 98 - T 13-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RAM_18950 c1172348b5c26b839894e0f214dd05a7 203 Gene3D G3DSA:1.10.150.120 127 203 3.3E-29 T 13-10-2018 RAM_18950 c1172348b5c26b839894e0f214dd05a7 203 SUPERFAMILY SSF47741 137 201 3.93E-28 T 13-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily RAM_18950 c1172348b5c26b839894e0f214dd05a7 203 Pfam PF01799 [2Fe-2S] binding domain 124 198 3.7E-29 T 13-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RAM_18950 c1172348b5c26b839894e0f214dd05a7 203 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 57 104 8.7E-9 T 13-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RAM_18950 c1172348b5c26b839894e0f214dd05a7 203 Gene3D G3DSA:3.10.20.30 44 126 2.3E-32 T 13-10-2018 IPR012675 Beta-grasp domain superfamily RAM_18950 c1172348b5c26b839894e0f214dd05a7 203 SUPERFAMILY SSF54292 53 129 2.36E-26 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RAM_16850 d1d38de3546093101ea447bb4a0435d4 232 Gene3D G3DSA:1.10.10.10 3 68 7.0E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_16850 d1d38de3546093101ea447bb4a0435d4 232 Gene3D G3DSA:3.40.1410.10 81 228 2.1E-46 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RAM_16850 d1d38de3546093101ea447bb4a0435d4 232 SUPERFAMILY SSF46785 4 67 6.23E-15 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_16850 d1d38de3546093101ea447bb4a0435d4 232 SUPERFAMILY SSF64288 51 226 3.14E-44 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RAM_16850 d1d38de3546093101ea447bb4a0435d4 232 Pfam PF07702 UTRA domain 85 220 6.9E-41 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RAM_16850 d1d38de3546093101ea447bb4a0435d4 232 SMART SM00345 6 63 2.5E-13 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_16850 d1d38de3546093101ea447bb4a0435d4 232 SMART SM00866 81 220 8.0E-38 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RAM_16850 d1d38de3546093101ea447bb4a0435d4 232 Pfam PF00392 Bacterial regulatory proteins, gntR family 17 62 1.6E-13 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_16850 d1d38de3546093101ea447bb4a0435d4 232 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 23 37 8.5E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_16850 d1d38de3546093101ea447bb4a0435d4 232 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 37 53 8.5E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_20365 b909098fc57737f6a2f7b65e22d9ff7f 799 SUPERFAMILY SSF50370 345 474 6.16E-38 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_20365 b909098fc57737f6a2f7b65e22d9ff7f 799 SMART SM00633 83 336 1.1E-125 T 13-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_20365 b909098fc57737f6a2f7b65e22d9ff7f 799 Gene3D G3DSA:2.80.10.50 349 474 4.7E-39 T 13-10-2018 RAM_20365 b909098fc57737f6a2f7b65e22d9ff7f 799 ProSitePatterns PS00591 Glycosyl hydrolases family 10 (GH10) active site. 262 272 - T 13-10-2018 IPR031158 Glycosyl hydrolases family 10, active site MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_20365 b909098fc57737f6a2f7b65e22d9ff7f 799 PRINTS PR00134 Glycosyl hydrolase family 10 signature 229 241 7.9E-15 T 13-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_20365 b909098fc57737f6a2f7b65e22d9ff7f 799 PRINTS PR00134 Glycosyl hydrolase family 10 signature 114 126 7.9E-15 T 13-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_20365 b909098fc57737f6a2f7b65e22d9ff7f 799 PRINTS PR00134 Glycosyl hydrolase family 10 signature 200 211 7.9E-15 T 13-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_20365 b909098fc57737f6a2f7b65e22d9ff7f 799 PRINTS PR00134 Glycosyl hydrolase family 10 signature 156 167 7.9E-15 T 13-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_20365 b909098fc57737f6a2f7b65e22d9ff7f 799 Pfam PF00652 Ricin-type beta-trefoil lectin domain 347 473 3.2E-28 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_20365 b909098fc57737f6a2f7b65e22d9ff7f 799 SMART SM00458 348 476 2.5E-31 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_20365 b909098fc57737f6a2f7b65e22d9ff7f 799 Gene3D G3DSA:2.115.10.20 484 799 4.8E-149 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily RAM_20365 b909098fc57737f6a2f7b65e22d9ff7f 799 Pfam PF00331 Glycosyl hydrolase family 10 42 335 2.6E-109 T 13-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_20365 b909098fc57737f6a2f7b65e22d9ff7f 799 SUPERFAMILY SSF75005 510 791 2.36E-28 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily RAM_20365 b909098fc57737f6a2f7b65e22d9ff7f 799 Pfam PF03664 Glycosyl hydrolase family 62 483 765 5.9E-62 T 13-10-2018 IPR005193 Glycoside hydrolase, family 62, arabinosidase GO:0046373|GO:0046556 KEGG: 00520+3.2.1.55 RAM_20365 b909098fc57737f6a2f7b65e22d9ff7f 799 Gene3D G3DSA:3.20.20.80 35 340 4.9E-115 T 13-10-2018 RAM_20365 b909098fc57737f6a2f7b65e22d9ff7f 799 SUPERFAMILY SSF51445 43 336 1.49E-110 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_12870 c08d00abb7b06119cc61be285fa6bb88 136 Gene3D G3DSA:3.10.180.10 2 136 1.8E-34 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_12870 c08d00abb7b06119cc61be285fa6bb88 136 SUPERFAMILY SSF54593 6 133 2.69E-23 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_12870 c08d00abb7b06119cc61be285fa6bb88 136 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 132 1.5E-11 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RAM_00530 a747c5d506c305d784fd9d5743759106 419 Gene3D G3DSA:3.40.50.720 1 181 3.8E-56 T 13-10-2018 RAM_00530 a747c5d506c305d784fd9d5743759106 419 SUPERFAMILY SSF52413 286 402 1.7E-32 T 13-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 RAM_00530 a747c5d506c305d784fd9d5743759106 419 Gene3D G3DSA:3.40.50.720 212 419 5.9E-67 T 13-10-2018 RAM_00530 a747c5d506c305d784fd9d5743759106 419 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 390 4.0E-120 T 13-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 RAM_00530 a747c5d506c305d784fd9d5743759106 419 SUPERFAMILY SSF48179 182 278 8.84E-29 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RAM_00530 a747c5d506c305d784fd9d5743759106 419 SMART SM00984 297 394 6.4E-33 T 13-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 RAM_00530 a747c5d506c305d784fd9d5743759106 419 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 182 272 3.9E-33 T 13-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 RAM_00530 a747c5d506c305d784fd9d5743759106 419 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 298 394 4.8E-26 T 13-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 RAM_00530 a747c5d506c305d784fd9d5743759106 419 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 161 2.1E-45 T 13-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 RAM_00530 a747c5d506c305d784fd9d5743759106 419 Gene3D G3DSA:1.20.5.100 182 211 1.7E-13 T 13-10-2018 RAM_00530 a747c5d506c305d784fd9d5743759106 419 SUPERFAMILY SSF51735 1 172 1.25E-38 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_00530 a747c5d506c305d784fd9d5743759106 419 PIRSF PIRSF500134 1 412 3.7E-141 T 13-10-2018 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|MetaCyc: PWY-7820 RAM_00530 a747c5d506c305d784fd9d5743759106 419 PIRSF PIRSF000124 1 409 3.9E-114 T 13-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 RAM_15395 ab8d475b0d3e419a2b6722cb363413e1 273 Pfam PF01061 ABC-2 type transporter 29 239 3.3E-39 T 13-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 RAM_15395 ab8d475b0d3e419a2b6722cb363413e1 273 PIRSF PIRSF006648 6 273 2.0E-66 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 RAM_15395 ab8d475b0d3e419a2b6722cb363413e1 273 PRINTS PR00164 ABC-2 type transport system membrane protein signature 77 99 1.9E-9 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 RAM_15395 ab8d475b0d3e419a2b6722cb363413e1 273 PRINTS PR00164 ABC-2 type transport system membrane protein signature 197 216 1.9E-9 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 RAM_15395 ab8d475b0d3e419a2b6722cb363413e1 273 PRINTS PR00164 ABC-2 type transport system membrane protein signature 217 236 1.9E-9 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 RAM_15395 ab8d475b0d3e419a2b6722cb363413e1 273 PRINTS PR00164 ABC-2 type transport system membrane protein signature 160 184 1.9E-9 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 RAM_21595 375b32bdc2b01961204db38cfbf173ad 217 Pfam PF00072 Response regulator receiver domain 9 111 2.4E-6 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_21595 375b32bdc2b01961204db38cfbf173ad 217 SUPERFAMILY SSF52172 6 126 1.85E-15 T 13-10-2018 IPR011006 CheY-like superfamily RAM_21595 375b32bdc2b01961204db38cfbf173ad 217 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 180 2.2E-6 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_21595 375b32bdc2b01961204db38cfbf173ad 217 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 164 2.2E-6 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_21595 375b32bdc2b01961204db38cfbf173ad 217 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 192 2.2E-6 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_21595 375b32bdc2b01961204db38cfbf173ad 217 Gene3D G3DSA:3.40.50.12740 7 210 4.3E-36 T 13-10-2018 RAM_21595 375b32bdc2b01961204db38cfbf173ad 217 SMART SM00421 147 204 2.9E-10 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_21595 375b32bdc2b01961204db38cfbf173ad 217 SUPERFAMILY SSF46894 139 210 3.74E-15 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_21595 375b32bdc2b01961204db38cfbf173ad 217 Pfam PF00196 Bacterial regulatory proteins, luxR family 149 200 1.5E-10 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_21595 375b32bdc2b01961204db38cfbf173ad 217 SMART SM00448 7 111 0.0033 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_44560 81ff63bfc82bed6c2bf633dcfc43c15f 228 Gene3D G3DSA:3.40.50.1000 1 224 5.4E-34 T 13-10-2018 IPR023214 HAD superfamily RAM_44560 81ff63bfc82bed6c2bf633dcfc43c15f 228 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 90 202 7.4E-9 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_44560 81ff63bfc82bed6c2bf633dcfc43c15f 228 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 123 194 5.1E-6 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_44560 81ff63bfc82bed6c2bf633dcfc43c15f 228 SUPERFAMILY SSF56784 1 214 1.85E-33 T 13-10-2018 IPR036412 HAD-like superfamily RAM_44560 81ff63bfc82bed6c2bf633dcfc43c15f 228 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 195 208 4.6E-11 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_44560 81ff63bfc82bed6c2bf633dcfc43c15f 228 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 168 188 4.6E-11 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_44560 81ff63bfc82bed6c2bf633dcfc43c15f 228 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 150 166 4.6E-11 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_44560 81ff63bfc82bed6c2bf633dcfc43c15f 228 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 120 133 4.6E-11 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_44560 81ff63bfc82bed6c2bf633dcfc43c15f 228 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 3 14 4.6E-11 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_44560 81ff63bfc82bed6c2bf633dcfc43c15f 228 Pfam PF13419 Haloacid dehalogenase-like hydrolase 102 206 1.5E-12 T 13-10-2018 RAM_12835 d93a11d383016377571ec5cd0a662866 179 Pfam PF01613 Flavin reductase like domain 16 158 5.0E-38 T 13-10-2018 IPR002563 Flavin reductase like domain GO:0010181 RAM_12835 d93a11d383016377571ec5cd0a662866 179 SUPERFAMILY SSF50475 6 157 9.32E-52 T 13-10-2018 RAM_12835 d93a11d383016377571ec5cd0a662866 179 Gene3D G3DSA:2.30.110.10 3 179 2.4E-55 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_12835 d93a11d383016377571ec5cd0a662866 179 SMART SM00903 15 158 1.7E-61 T 13-10-2018 IPR002563 Flavin reductase like domain GO:0010181 RAM_38305 5a0cf3d68bbdfa1f2f3d6a2a47b026be 305 Pfam PF04072 Leucine carboxyl methyltransferase 21 196 9.0E-60 T 13-10-2018 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp GO:0008168|GO:0032259 RAM_38305 5a0cf3d68bbdfa1f2f3d6a2a47b026be 305 TIGRFAM TIGR00027 mthyl_TIGR00027: methyltransferase, TIGR00027 family 19 277 5.4E-77 T 13-10-2018 IPR011610 S-adenosyl-L-methionine-dependent methyltransferase, putative GO:0008168 RAM_38305 5a0cf3d68bbdfa1f2f3d6a2a47b026be 305 SUPERFAMILY SSF53335 17 297 1.96E-72 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_38305 5a0cf3d68bbdfa1f2f3d6a2a47b026be 305 Gene3D G3DSA:3.40.50.150 4 295 2.6E-83 T 13-10-2018 RAM_33740 9aceeb42de39d8501c637ebde5798548 272 Gene3D G3DSA:3.30.2400.30 3 261 2.8E-76 T 13-10-2018 RAM_33740 9aceeb42de39d8501c637ebde5798548 272 Gene3D G3DSA:3.30.2320.10 137 267 2.8E-76 T 13-10-2018 RAM_33740 9aceeb42de39d8501c637ebde5798548 272 Pfam PF04454 Encapsulating protein for peroxidase 1 257 6.2E-78 T 13-10-2018 IPR007544 Encapsulating protein for peroxidase GO:0008233|GO:0042742 RAM_33740 9aceeb42de39d8501c637ebde5798548 272 PIRSF PIRSF019254 1 272 3.4E-89 T 13-10-2018 IPR007544 Encapsulating protein for peroxidase GO:0008233|GO:0042742 RAM_24060 e9e9788f398f02bd3f3c490188017133 223 Gene3D G3DSA:3.40.50.300 1 139 1.7E-21 T 13-10-2018 RAM_24060 e9e9788f398f02bd3f3c490188017133 223 PIRSF PIRSF035805 1 215 5.0E-35 T 13-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 RAM_24060 e9e9788f398f02bd3f3c490188017133 223 SUPERFAMILY SSF52540 2 138 3.07E-27 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_24060 e9e9788f398f02bd3f3c490188017133 223 Pfam PF00265 Thymidine kinase 2 165 2.8E-21 T 13-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 RAM_28665 077163abd578829b19dda46bb220f9f7 227 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 181 194 5.2E-11 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_28665 077163abd578829b19dda46bb220f9f7 227 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 136 152 5.2E-11 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_28665 077163abd578829b19dda46bb220f9f7 227 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 105 118 5.2E-11 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_28665 077163abd578829b19dda46bb220f9f7 227 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 4 15 5.2E-11 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_28665 077163abd578829b19dda46bb220f9f7 227 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 154 174 5.2E-11 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_28665 077163abd578829b19dda46bb220f9f7 227 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 89 190 2.5E-8 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_28665 077163abd578829b19dda46bb220f9f7 227 TIGRFAM TIGR01493 HAD-SF-IA-v2: HAD hydrolase, family IA, variant 2 8 183 4.0E-11 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_28665 077163abd578829b19dda46bb220f9f7 227 Gene3D G3DSA:1.10.150.240 18 90 6.6E-64 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 RAM_28665 077163abd578829b19dda46bb220f9f7 227 TIGRFAM TIGR01428 HAD_type_II: haloacid dehalogenase, type II 6 197 1.9E-42 T 13-10-2018 IPR006328 L-2-Haloacid dehalogenase GO:0019120 KEGG: 00361+3.8.1.2|KEGG: 00625+3.8.1.2|MetaCyc: PWY-7425 RAM_28665 077163abd578829b19dda46bb220f9f7 227 Pfam PF13419 Haloacid dehalogenase-like hydrolase 90 192 4.3E-12 T 13-10-2018 RAM_28665 077163abd578829b19dda46bb220f9f7 227 SUPERFAMILY SSF56784 7 220 1.03E-37 T 13-10-2018 IPR036412 HAD-like superfamily RAM_28665 077163abd578829b19dda46bb220f9f7 227 Gene3D G3DSA:3.40.50.1000 8 215 6.6E-64 T 13-10-2018 IPR023214 HAD superfamily RAM_46000 bba645a0fb4249ac234c6041f8f6577c 207 Pfam PF01872 RibD C-terminal domain 4 186 6.2E-27 T 13-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 RAM_46000 bba645a0fb4249ac234c6041f8f6577c 207 Gene3D G3DSA:3.40.430.10 3 190 1.1E-42 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RAM_46000 bba645a0fb4249ac234c6041f8f6577c 207 SUPERFAMILY SSF53597 4 190 4.19E-29 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RAM_32025 d9fed74e2f1ad32c42ff4de551646818 775 Pfam PF13193 AMP-binding enzyme C-terminal domain 592 669 8.3E-11 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_32025 d9fed74e2f1ad32c42ff4de551646818 775 SUPERFAMILY SSF56801 127 707 3.53E-138 T 13-10-2018 RAM_32025 d9fed74e2f1ad32c42ff4de551646818 775 Pfam PF00550 Phosphopantetheine attachment site 698 759 2.0E-17 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_32025 d9fed74e2f1ad32c42ff4de551646818 775 Pfam PF00501 AMP-binding enzyme 149 583 1.7E-88 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_32025 d9fed74e2f1ad32c42ff4de551646818 775 ProSitePatterns PS00012 Phosphopantetheine attachment site. 720 735 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_32025 d9fed74e2f1ad32c42ff4de551646818 775 SMART SM00823 Phosphopantetheine attachment site 696 763 3.6E-6 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_32025 d9fed74e2f1ad32c42ff4de551646818 775 SUPERFAMILY SSF47336 690 759 7.2E-19 T 13-10-2018 IPR036736 ACP-like superfamily RAM_32025 d9fed74e2f1ad32c42ff4de551646818 775 ProSitePatterns PS00455 Putative AMP-binding domain signature. 329 340 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_32025 d9fed74e2f1ad32c42ff4de551646818 775 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 170 607 2.0E-114 T 13-10-2018 IPR010071 Amino acid adenylation domain RAM_32025 d9fed74e2f1ad32c42ff4de551646818 775 Gene3D G3DSA:3.30.300.30 578 687 1.8E-31 T 13-10-2018 RAM_32025 d9fed74e2f1ad32c42ff4de551646818 775 Gene3D G3DSA:3.40.50.1820 688 773 6.8E-25 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_32025 d9fed74e2f1ad32c42ff4de551646818 775 Gene3D G3DSA:3.40.50.12780 137 577 3.3E-121 T 13-10-2018 RAM_15400 3ad2b53f03c9216dd67fe3c8ea898145 192 ProSitePatterns PS00211 ABC transporters family signature. 62 76 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_15400 3ad2b53f03c9216dd67fe3c8ea898145 192 SUPERFAMILY SSF52540 2 151 7.14E-42 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_15400 3ad2b53f03c9216dd67fe3c8ea898145 192 Gene3D G3DSA:3.40.50.300 1 160 7.0E-44 T 13-10-2018 RAM_15400 3ad2b53f03c9216dd67fe3c8ea898145 192 Pfam PF00005 ABC transporter 2 89 4.2E-13 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_41895 4b238e96c8a72442b4907bc74cd1b7fe 249 Gene3D G3DSA:3.40.1280.10 101 248 1.3E-28 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RAM_41895 4b238e96c8a72442b4907bc74cd1b7fe 249 SUPERFAMILY SSF75217 98 243 2.15E-29 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases RAM_41895 4b238e96c8a72442b4907bc74cd1b7fe 249 SUPERFAMILY SSF55315 10 95 2.82E-6 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like RAM_41895 4b238e96c8a72442b4907bc74cd1b7fe 249 Pfam PF00588 SpoU rRNA Methylase family 109 239 4.7E-24 T 13-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 RAM_18330 7f654d622fc19e234983d3e151c25499 161 Gene3D G3DSA:3.10.450.50 5 139 1.1E-41 T 13-10-2018 RAM_18330 7f654d622fc19e234983d3e151c25499 161 SUPERFAMILY SSF54427 5 127 6.36E-30 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_18330 7f654d622fc19e234983d3e151c25499 161 Pfam PF13474 SnoaL-like domain 7 126 2.2E-20 T 13-10-2018 IPR037401 SnoaL-like domain RAM_25975 6c047bd16161a48c63d62e70a1464de3 626 SUPERFAMILY SSF52743 236 614 3.67E-47 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RAM_25975 6c047bd16161a48c63d62e70a1464de3 626 Pfam PF09286 Pro-kumamolisin, activation domain 43 175 3.5E-24 T 13-10-2018 IPR015366 Peptidase S53, activation domain GO:0008236 Reactome: R-HSA-381038 RAM_25975 6c047bd16161a48c63d62e70a1464de3 626 Pfam PF00082 Subtilase family 313 543 1.4E-5 T 13-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RAM_25975 6c047bd16161a48c63d62e70a1464de3 626 Gene3D G3DSA:3.40.50.200 231 622 2.3E-77 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RAM_25975 6c047bd16161a48c63d62e70a1464de3 626 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 524 534 - T 13-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site RAM_25975 6c047bd16161a48c63d62e70a1464de3 626 SMART SM00944 39 177 1.7E-36 T 13-10-2018 IPR015366 Peptidase S53, activation domain GO:0008236 Reactome: R-HSA-381038 RAM_25975 6c047bd16161a48c63d62e70a1464de3 626 SUPERFAMILY SSF54897 35 175 8.5E-32 T 13-10-2018 RAM_11880 37c3fbb0adba7313e52f19b2dba19057 353 Pfam PF00583 Acetyltransferase (GNAT) family 245 319 5.1E-8 T 13-10-2018 IPR000182 GNAT domain RAM_11880 37c3fbb0adba7313e52f19b2dba19057 353 SUPERFAMILY SSF55729 205 334 1.15E-17 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_11880 37c3fbb0adba7313e52f19b2dba19057 353 SUPERFAMILY SSF55021 14 60 9.92E-6 T 13-10-2018 RAM_11880 37c3fbb0adba7313e52f19b2dba19057 353 Gene3D G3DSA:3.40.630.30 195 352 8.3E-27 T 13-10-2018 RAM_16645 021a039e2f8284136429458c00f515c8 490 Gene3D G3DSA:3.40.309.10 265 455 5.7E-178 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RAM_16645 021a039e2f8284136429458c00f515c8 490 Pfam PF00171 Aldehyde dehydrogenase family 27 485 8.2E-172 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RAM_16645 021a039e2f8284136429458c00f515c8 490 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 260 267 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 RAM_16645 021a039e2f8284136429458c00f515c8 490 Gene3D G3DSA:3.40.605.10 23 483 5.7E-178 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RAM_16645 021a039e2f8284136429458c00f515c8 490 SUPERFAMILY SSF53720 17 487 3.53E-168 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RAM_12950 981ee76f9264f16b933e713538872b47 400 Gene3D G3DSA:2.30.40.10 9 396 1.1E-121 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_12950 981ee76f9264f16b933e713538872b47 400 SUPERFAMILY SSF51338 3 399 3.24E-16 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_12950 981ee76f9264f16b933e713538872b47 400 Pfam PF01979 Amidohydrolase family 50 396 2.1E-45 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RAM_12950 981ee76f9264f16b933e713538872b47 400 SUPERFAMILY SSF51556 54 362 4.33E-95 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_12950 981ee76f9264f16b933e713538872b47 400 Gene3D G3DSA:3.20.20.140 55 358 1.1E-121 T 13-10-2018 RAM_02775 f8adc9eb5305ceacfbb50bf039d7fc57 641 SUPERFAMILY SSF52518 249 515 8.84E-61 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_02775 f8adc9eb5305ceacfbb50bf039d7fc57 641 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 37 225 2.8E-26 T 13-10-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 RAM_02775 f8adc9eb5305ceacfbb50bf039d7fc57 641 Gene3D G3DSA:3.40.50.920 530 633 3.2E-15 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RAM_02775 f8adc9eb5305ceacfbb50bf039d7fc57 641 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 278 493 1.6E-51 T 13-10-2018 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 RAM_02775 f8adc9eb5305ceacfbb50bf039d7fc57 641 SUPERFAMILY SSF52922 534 634 1.49E-10 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RAM_02775 f8adc9eb5305ceacfbb50bf039d7fc57 641 TIGRFAM TIGR03710 OAFO_sf: 2-oxoacid:acceptor oxidoreductase, alpha subunit 29 625 4.8E-198 T 13-10-2018 IPR022367 2-oxoacid:acceptor oxidoreductase, alpha subunit KEGG: 00020+1.2.7.3|KEGG: 00720+1.2.7.3|MetaCyc: PWY-5392|MetaCyc: PWY-6969 RAM_02775 f8adc9eb5305ceacfbb50bf039d7fc57 641 Gene3D G3DSA:3.40.920.10 25 231 6.7E-16 T 13-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 RAM_02775 f8adc9eb5305ceacfbb50bf039d7fc57 641 SUPERFAMILY SSF53323 31 237 2.09E-17 T 13-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 RAM_02775 f8adc9eb5305ceacfbb50bf039d7fc57 641 Gene3D G3DSA:3.40.50.970 237 440 9.7E-63 T 13-10-2018 RAM_03860 ce51964afc2efff2a9c552e24a99e117 110 SUPERFAMILY SSF46785 7 86 2.55E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_03860 ce51964afc2efff2a9c552e24a99e117 110 Gene3D G3DSA:1.10.10.10 1 93 4.7E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_03860 ce51964afc2efff2a9c552e24a99e117 110 Pfam PF01022 Bacterial regulatory protein, arsR family 19 65 3.2E-15 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_03860 ce51964afc2efff2a9c552e24a99e117 110 SMART SM00418 12 91 1.1E-20 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_03860 ce51964afc2efff2a9c552e24a99e117 110 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 48 63 6.2E-10 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_03860 ce51964afc2efff2a9c552e24a99e117 110 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 14 29 6.2E-10 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_03860 ce51964afc2efff2a9c552e24a99e117 110 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 63 78 6.2E-10 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_15965 139d137916989fc3f92de180e897adeb 407 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 129 7.0E-12 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_15965 139d137916989fc3f92de180e897adeb 407 Gene3D G3DSA:1.10.540.10 1 131 2.6E-49 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_15965 139d137916989fc3f92de180e897adeb 407 SUPERFAMILY SSF56645 1 260 5.1E-66 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_15965 139d137916989fc3f92de180e897adeb 407 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 133 235 1.4E-22 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RAM_15965 139d137916989fc3f92de180e897adeb 407 Gene3D G3DSA:1.20.140.10 248 404 8.5E-39 T 13-10-2018 RAM_15965 139d137916989fc3f92de180e897adeb 407 Gene3D G3DSA:2.40.110.10 132 247 2.2E-50 T 13-10-2018 RAM_15965 139d137916989fc3f92de180e897adeb 407 SUPERFAMILY SSF47203 245 402 3.7E-43 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_15965 139d137916989fc3f92de180e897adeb 407 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 247 397 2.2E-35 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_43405 a6278d0570d44274b78f91d49ac4ce37 272 PIRSF PIRSF006648 13 267 1.9E-28 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 RAM_43405 a6278d0570d44274b78f91d49ac4ce37 272 Pfam PF01061 ABC-2 type transporter 23 229 5.4E-25 T 13-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 RAM_03205 db6cded2747eed4cb711118c8d7e1309 388 Gene3D G3DSA:3.40.640.10 16 249 3.0E-80 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_03205 db6cded2747eed4cb711118c8d7e1309 388 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 17 371 2.4E-116 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase RAM_03205 db6cded2747eed4cb711118c8d7e1309 388 Gene3D G3DSA:3.90.1150.10 250 388 7.4E-31 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_03205 db6cded2747eed4cb711118c8d7e1309 388 SUPERFAMILY SSF53383 8 385 1.01E-96 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_03205 db6cded2747eed4cb711118c8d7e1309 388 PIRSF PIRSF000390 3 386 1.4E-101 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase RAM_43270 c8d3d6e849a1b9e8e496a2b4d2a622c9 193 SUPERFAMILY SSF46689 4 78 1.13E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_43270 c8d3d6e849a1b9e8e496a2b4d2a622c9 193 Gene3D G3DSA:1.10.10.60 1 57 2.2E-8 T 13-10-2018 RAM_43270 c8d3d6e849a1b9e8e496a2b4d2a622c9 193 SUPERFAMILY SSF48498 91 190 8.22E-6 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_43270 c8d3d6e849a1b9e8e496a2b4d2a622c9 193 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 59 1.3E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_43270 c8d3d6e849a1b9e8e496a2b4d2a622c9 193 Gene3D G3DSA:1.10.357.10 58 193 4.9E-12 T 13-10-2018 RAM_36155 4837cd3866e7c098834cd7f0f035eb75 213 Gene3D G3DSA:3.40.50.300 41 213 4.2E-51 T 13-10-2018 RAM_36155 4837cd3866e7c098834cd7f0f035eb75 213 SUPERFAMILY SSF52540 42 212 1.19E-38 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_36155 4837cd3866e7c098834cd7f0f035eb75 213 PIRSF PIRSF006135 40 213 2.5E-49 T 13-10-2018 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-6269|MetaCyc: PWY-7962|MetaCyc: PWY-7971|MetaCyc: PWY-7972 RAM_36155 4837cd3866e7c098834cd7f0f035eb75 213 Pfam PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase 42 213 3.4E-53 T 13-10-2018 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-6269|MetaCyc: PWY-7962|MetaCyc: PWY-7971|MetaCyc: PWY-7972 RAM_26270 06e076f9562e98aac331179d5f42bf42 162 SMART SM00347 36 136 7.1E-20 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_26270 06e076f9562e98aac331179d5f42bf42 162 ProSitePatterns PS01117 MarR-type HTH domain signature. 75 109 - T 13-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site RAM_26270 06e076f9562e98aac331179d5f42bf42 162 SUPERFAMILY SSF46785 19 145 2.77E-27 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_26270 06e076f9562e98aac331179d5f42bf42 162 Pfam PF01047 MarR family 43 100 9.6E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_26270 06e076f9562e98aac331179d5f42bf42 162 Gene3D G3DSA:1.10.10.10 5 152 3.2E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_39580 55945486b4d06ecf1899b15570a2a91b 258 ProSitePatterns PS01277 Ribonuclease PH signature. 117 130 - T 13-10-2018 IPR018336 Ribonuclease PH, conserved site RAM_39580 55945486b4d06ecf1899b15570a2a91b 258 Gene3D G3DSA:3.30.230.70 15 248 2.0E-59 T 13-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 RAM_39580 55945486b4d06ecf1899b15570a2a91b 258 Pfam PF03725 3' exoribonuclease family, domain 2 161 225 2.9E-9 T 13-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 RAM_39580 55945486b4d06ecf1899b15570a2a91b 258 Pfam PF01138 3' exoribonuclease family, domain 1 11 141 4.9E-21 T 13-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 RAM_39580 55945486b4d06ecf1899b15570a2a91b 258 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 3 238 1.1E-108 T 13-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 RAM_39580 55945486b4d06ecf1899b15570a2a91b 258 SUPERFAMILY SSF55666 155 241 8.25E-22 T 13-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 RAM_39580 55945486b4d06ecf1899b15570a2a91b 258 Hamap MF_00564 Ribonuclease PH [rph]. 12 239 42.648 T 13-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 RAM_39580 55945486b4d06ecf1899b15570a2a91b 258 SUPERFAMILY SSF54211 3 183 2.78E-42 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RAM_43215 c6d3daa4d78c49d2ec53be2a21ebd192 472 SUPERFAMILY SSF56176 2 217 2.76E-47 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RAM_43215 c6d3daa4d78c49d2ec53be2a21ebd192 472 Gene3D G3DSA:1.10.45.10 433 472 1.1E-6 T 13-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 RAM_43215 c6d3daa4d78c49d2ec53be2a21ebd192 472 Pfam PF01565 FAD binding domain 39 176 1.9E-34 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RAM_43215 c6d3daa4d78c49d2ec53be2a21ebd192 472 SUPERFAMILY SSF55103 194 471 7.85E-34 T 13-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 RAM_43215 c6d3daa4d78c49d2ec53be2a21ebd192 472 Pfam PF02913 FAD linked oxidases, C-terminal domain 217 471 2.7E-33 T 13-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 RAM_43215 c6d3daa4d78c49d2ec53be2a21ebd192 472 Gene3D G3DSA:3.30.465.40 7 216 2.8E-130 T 13-10-2018 RAM_43215 c6d3daa4d78c49d2ec53be2a21ebd192 472 Gene3D G3DSA:3.40.462.40 19 424 2.8E-130 T 13-10-2018 RAM_26800 4ef1d18f37c4a8f31dbbb32b0838e3f7 296 SUPERFAMILY SSF47240 21 229 5.07E-8 T 13-10-2018 IPR009078 Ferritin-like superfamily RAM_26800 4ef1d18f37c4a8f31dbbb32b0838e3f7 296 Gene3D G3DSA:1.10.620.20 25 282 2.1E-5 T 13-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 RAM_26800 4ef1d18f37c4a8f31dbbb32b0838e3f7 296 Pfam PF11583 P-aminobenzoate N-oxygenase AurF 6 280 2.0E-97 T 13-10-2018 IPR025859 P-aminobenzoate N-oxygenase AurF RAM_12995 a20f729ea5506ca2ad642b24bd0cada3 325 Pfam PF01796 DUF35 OB-fold domain, acyl-CoA-associated 228 293 7.1E-13 T 13-10-2018 IPR002878 Domain of unknown function DUF35, OB-fold, C-terminal RAM_12995 a20f729ea5506ca2ad642b24bd0cada3 325 Pfam PF01796 DUF35 OB-fold domain, acyl-CoA-associated 65 128 4.5E-12 T 13-10-2018 IPR002878 Domain of unknown function DUF35, OB-fold, C-terminal RAM_12995 a20f729ea5506ca2ad642b24bd0cada3 325 SUPERFAMILY SSF50249 165 300 3.6E-38 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_12995 a20f729ea5506ca2ad642b24bd0cada3 325 Pfam PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) 193 225 4.7E-11 T 13-10-2018 IPR022002 Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal RAM_12995 a20f729ea5506ca2ad642b24bd0cada3 325 SUPERFAMILY SSF50249 5 131 3.43E-27 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_12995 a20f729ea5506ca2ad642b24bd0cada3 325 Gene3D G3DSA:1.10.12.20 162 231 1.8E-15 T 13-10-2018 RAM_12995 a20f729ea5506ca2ad642b24bd0cada3 325 Gene3D G3DSA:1.10.12.20 8 67 1.4E-5 T 13-10-2018 RAM_20525 b43aaa5139005e7afdd9e09ef7b78a57 264 Gene3D G3DSA:3.40.50.300 8 261 2.1E-67 T 13-10-2018 RAM_20525 b43aaa5139005e7afdd9e09ef7b78a57 264 SUPERFAMILY SSF52540 11 229 2.32E-67 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_20525 b43aaa5139005e7afdd9e09ef7b78a57 264 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_20525 b43aaa5139005e7afdd9e09ef7b78a57 264 SMART SM00382 39 225 3.5E-18 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_20525 b43aaa5139005e7afdd9e09ef7b78a57 264 Pfam PF00005 ABC transporter 30 176 1.2E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_16235 0682a0f1b343f3b6324b6dcbf5ea1f99 310 SUPERFAMILY SSF161098 79 299 4.06E-49 T 13-10-2018 IPR035906 MetI-like superfamily RAM_16235 0682a0f1b343f3b6324b6dcbf5ea1f99 310 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 116 305 5.3E-18 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_16235 0682a0f1b343f3b6324b6dcbf5ea1f99 310 Gene3D G3DSA:1.10.3720.10 75 309 2.4E-54 T 13-10-2018 IPR035906 MetI-like superfamily RAM_06645 768e58b6b8b8655c5fa397c0c3e1e707 359 SUPERFAMILY SSF53822 68 352 1.25E-69 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_06645 768e58b6b8b8655c5fa397c0c3e1e707 359 Pfam PF13407 Periplasmic binding protein domain 80 332 1.5E-50 T 13-10-2018 IPR025997 Periplasmic binding protein RAM_06645 768e58b6b8b8655c5fa397c0c3e1e707 359 Gene3D G3DSA:3.40.50.2300 72 331 2.7E-82 T 13-10-2018 RAM_06645 768e58b6b8b8655c5fa397c0c3e1e707 359 Gene3D G3DSA:3.40.50.2300 177 314 2.7E-82 T 13-10-2018 RAM_07640 3f6c9000b131170382111e791871f0e9 390 Gene3D G3DSA:3.40.50.2000 13 386 3.5E-129 T 13-10-2018 RAM_07640 3f6c9000b131170382111e791871f0e9 390 TIGRFAM TIGR01426 MGT: glycosyltransferase, MGT family 15 388 2.7E-108 T 13-10-2018 IPR006326 UDP-glycosyltransferase, MGT GO:0016758|GO:0016999 RAM_07640 3f6c9000b131170382111e791871f0e9 390 Gene3D G3DSA:3.40.50.2000 213 374 3.5E-129 T 13-10-2018 RAM_07640 3f6c9000b131170382111e791871f0e9 390 Pfam PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 219 356 5.6E-13 T 13-10-2018 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0016758 Reactome: R-HSA-156588 RAM_07640 3f6c9000b131170382111e791871f0e9 390 SUPERFAMILY SSF53756 5 389 3.14E-75 T 13-10-2018 RAM_35615 81a98be1affd1bb562f0fdf762ca2f46 427 Pfam PF00512 His Kinase A (phospho-acceptor) domain 228 289 3.6E-10 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_35615 81a98be1affd1bb562f0fdf762ca2f46 427 Pfam PF00672 HAMP domain 173 220 1.4E-8 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_35615 81a98be1affd1bb562f0fdf762ca2f46 427 Gene3D G3DSA:1.10.287.130 177 290 8.4E-21 T 13-10-2018 RAM_35615 81a98be1affd1bb562f0fdf762ca2f46 427 SUPERFAMILY SSF55874 291 425 3.44E-17 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_35615 81a98be1affd1bb562f0fdf762ca2f46 427 SMART SM00388 226 290 3.4E-11 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_35615 81a98be1affd1bb562f0fdf762ca2f46 427 Gene3D G3DSA:3.30.565.10 291 425 6.6E-15 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_35615 81a98be1affd1bb562f0fdf762ca2f46 427 SMART SM00304 173 225 1.1E-9 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_35615 81a98be1affd1bb562f0fdf762ca2f46 427 SUPERFAMILY SSF158472 174 222 8.11E-5 T 13-10-2018 RAM_35615 81a98be1affd1bb562f0fdf762ca2f46 427 SMART SM00387 331 426 3.7E-11 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_35615 81a98be1affd1bb562f0fdf762ca2f46 427 SUPERFAMILY SSF47384 212 290 7.85E-11 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RAM_35325 6ad476e05cd7816bcc46fb076dbbb81b 250 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 75 90 7.8E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RAM_35325 6ad476e05cd7816bcc46fb076dbbb81b 250 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 90 106 7.8E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RAM_35325 6ad476e05cd7816bcc46fb076dbbb81b 250 SMART SM00342 23 106 1.1E-24 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_35325 6ad476e05cd7816bcc46fb076dbbb81b 250 SUPERFAMILY SSF46689 59 108 6.72E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_35325 6ad476e05cd7816bcc46fb076dbbb81b 250 Gene3D G3DSA:1.10.10.60 3 111 1.9E-27 T 13-10-2018 RAM_35325 6ad476e05cd7816bcc46fb076dbbb81b 250 Pfam PF12833 Helix-turn-helix domain 29 107 2.2E-19 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_35325 6ad476e05cd7816bcc46fb076dbbb81b 250 SUPERFAMILY SSF46689 7 56 1.03E-9 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_23810 e30f96b2e6ad6305db21145afeffcfdf 128 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 115 8.8E-10 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RAM_23810 e30f96b2e6ad6305db21145afeffcfdf 128 SUPERFAMILY SSF54593 1 123 6.58E-26 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_23810 e30f96b2e6ad6305db21145afeffcfdf 128 Gene3D G3DSA:3.10.180.10 1 119 9.4E-32 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_47120 ed85c7ea9952a3dac149ae2f0a5560a6 178 Gene3D G3DSA:3.40.630.30 1 178 5.3E-41 T 13-10-2018 RAM_47120 ed85c7ea9952a3dac149ae2f0a5560a6 178 SUPERFAMILY SSF55729 2 173 1.66E-38 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_47120 ed85c7ea9952a3dac149ae2f0a5560a6 178 Pfam PF13302 Acetyltransferase (GNAT) domain 9 146 1.1E-22 T 13-10-2018 IPR000182 GNAT domain RAM_06730 8d5da2debe07e8d061865863e2713700 338 SUPERFAMILY SSF50494 166 325 1.27E-16 T 13-10-2018 IPR009003 Peptidase S1, PA clan RAM_06730 8d5da2debe07e8d061865863e2713700 338 Gene3D G3DSA:2.40.10.10 240 325 4.9E-17 T 13-10-2018 RAM_06730 8d5da2debe07e8d061865863e2713700 338 Gene3D G3DSA:2.40.10.10 164 239 5.1E-19 T 13-10-2018 RAM_06730 8d5da2debe07e8d061865863e2713700 338 PIRSF PIRSF001134 3 338 1.4E-61 T 13-10-2018 IPR001316 Peptidase S1A, streptogrisin GO:0004252|GO:0006508 RAM_06730 8d5da2debe07e8d061865863e2713700 338 Pfam PF02983 Alpha-lytic protease prodomain 92 145 4.2E-9 T 13-10-2018 IPR004236 Peptidase S1A, alpha-lytic prodomain GO:0005576|GO:0006508|GO:0008236 RAM_06730 8d5da2debe07e8d061865863e2713700 338 PRINTS PR00861 Alpha-lytic endopeptidase serine protease (S2A) signature 190 204 8.5E-22 T 13-10-2018 IPR001316 Peptidase S1A, streptogrisin GO:0004252|GO:0006508 RAM_06730 8d5da2debe07e8d061865863e2713700 338 PRINTS PR00861 Alpha-lytic endopeptidase serine protease (S2A) signature 284 307 8.5E-22 T 13-10-2018 IPR001316 Peptidase S1A, streptogrisin GO:0004252|GO:0006508 RAM_06730 8d5da2debe07e8d061865863e2713700 338 PRINTS PR00861 Alpha-lytic endopeptidase serine protease (S2A) signature 244 264 8.5E-22 T 13-10-2018 IPR001316 Peptidase S1A, streptogrisin GO:0004252|GO:0006508 RAM_06730 8d5da2debe07e8d061865863e2713700 338 PRINTS PR00861 Alpha-lytic endopeptidase serine protease (S2A) signature 265 282 8.5E-22 T 13-10-2018 IPR001316 Peptidase S1A, streptogrisin GO:0004252|GO:0006508 RAM_06730 8d5da2debe07e8d061865863e2713700 338 PRINTS PR00861 Alpha-lytic endopeptidase serine protease (S2A) signature 308 322 8.5E-22 T 13-10-2018 IPR001316 Peptidase S1A, streptogrisin GO:0004252|GO:0006508 RAM_28020 dec651e5d8a42de8d6653254fe7e6934 159 Gene3D G3DSA:2.60.120.10 1 150 5.9E-36 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_28020 dec651e5d8a42de8d6653254fe7e6934 159 SUPERFAMILY SSF51182 8 128 1.6E-22 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RAM_28020 dec651e5d8a42de8d6653254fe7e6934 159 Pfam PF07883 Cupin domain 40 96 6.3E-12 T 13-10-2018 IPR013096 Cupin 2, conserved barrel RAM_00295 20f2fc4c93416098db55327ec3b42ebd 239 SUPERFAMILY SSF50494 12 239 5.89E-32 T 13-10-2018 IPR009003 Peptidase S1, PA clan RAM_00295 20f2fc4c93416098db55327ec3b42ebd 239 Pfam PF00089 Trypsin 18 234 1.1E-17 T 13-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 RAM_00295 20f2fc4c93416098db55327ec3b42ebd 239 SMART SM00020 15 234 1.1E-7 T 13-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 RAM_00295 20f2fc4c93416098db55327ec3b42ebd 239 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 61 66 - T 13-10-2018 IPR018114 Serine proteases, trypsin family, histidine active site GO:0004252|GO:0006508 RAM_00295 20f2fc4c93416098db55327ec3b42ebd 239 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 185 197 9.2E-8 T 13-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 RAM_00295 20f2fc4c93416098db55327ec3b42ebd 239 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 51 66 9.2E-8 T 13-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 RAM_00295 20f2fc4c93416098db55327ec3b42ebd 239 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 107 121 9.2E-8 T 13-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 RAM_00295 20f2fc4c93416098db55327ec3b42ebd 239 Gene3D G3DSA:2.40.10.10 50 239 1.6E-23 T 13-10-2018 RAM_01605 240fb970e6d946e197e3921b5f744c72 402 Gene3D G3DSA:3.40.50.1820 99 365 2.4E-35 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_01605 240fb970e6d946e197e3921b5f744c72 402 SUPERFAMILY SSF53474 112 364 1.06E-25 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_01605 240fb970e6d946e197e3921b5f744c72 402 Pfam PF00756 Putative esterase 125 315 1.3E-9 T 13-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 RAM_25970 0695ad7b6c13e516de1c0de815397d1b 165 SUPERFAMILY SSF88946 3 90 3.92E-11 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_25970 0695ad7b6c13e516de1c0de815397d1b 165 Gene3D G3DSA:1.10.1740.10 1 74 5.0E-9 T 13-10-2018 RAM_25970 0695ad7b6c13e516de1c0de815397d1b 165 Gene3D G3DSA:1.10.10.10 75 160 4.7E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_25970 0695ad7b6c13e516de1c0de815397d1b 165 TIGRFAM TIGR02983 SigE-fam_strep: RNA polymerase sigma-70 factor, sigma-E family 2 158 1.0E-43 T 13-10-2018 IPR014325 RNA polymerase sigma-E factor, actinobacteria GO:0016987 RAM_25970 0695ad7b6c13e516de1c0de815397d1b 165 Pfam PF04542 Sigma-70 region 2 9 70 1.5E-6 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_25970 0695ad7b6c13e516de1c0de815397d1b 165 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 3 156 3.7E-18 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_25970 0695ad7b6c13e516de1c0de815397d1b 165 SUPERFAMILY SSF88659 93 155 1.27E-14 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_25970 0695ad7b6c13e516de1c0de815397d1b 165 Pfam PF08281 Sigma-70, region 4 102 153 2.1E-14 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_34595 72d775f88ca3a5e15a436a216e94da1a 702 SUPERFAMILY SSF52343 425 596 4.06E-25 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RAM_34595 72d775f88ca3a5e15a436a216e94da1a 702 SUPERFAMILY SSF54292 588 698 3.28E-27 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RAM_34595 72d775f88ca3a5e15a436a216e94da1a 702 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 618 691 4.2E-14 T 13-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RAM_34595 72d775f88ca3a5e15a436a216e94da1a 702 Pfam PF00175 Oxidoreductase NAD-binding domain 451 516 5.0E-7 T 13-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 RAM_34595 72d775f88ca3a5e15a436a216e94da1a 702 Gene3D G3DSA:2.40.30.10 335 437 2.8E-20 T 13-10-2018 RAM_34595 72d775f88ca3a5e15a436a216e94da1a 702 Pfam PF00970 Oxidoreductase FAD-binding domain 341 436 5.3E-11 T 13-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 RAM_34595 72d775f88ca3a5e15a436a216e94da1a 702 Pfam PF00487 Fatty acid desaturase 74 300 5.8E-26 T 13-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 RAM_34595 72d775f88ca3a5e15a436a216e94da1a 702 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 648 656 - T 13-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RAM_34595 72d775f88ca3a5e15a436a216e94da1a 702 Gene3D G3DSA:3.10.20.30 602 702 1.1E-25 T 13-10-2018 IPR012675 Beta-grasp domain superfamily RAM_34595 72d775f88ca3a5e15a436a216e94da1a 702 SUPERFAMILY SSF63380 330 440 1.54E-24 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RAM_34595 72d775f88ca3a5e15a436a216e94da1a 702 Gene3D G3DSA:3.40.50.80 444 601 1.7E-24 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RAM_34220 b3d8bb6b1b3cb6e23418ad61606e6d26 321 Gene3D G3DSA:3.90.180.10 20 311 9.4E-73 T 13-10-2018 RAM_34220 b3d8bb6b1b3cb6e23418ad61606e6d26 321 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 31 123 1.7E-6 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_34220 b3d8bb6b1b3cb6e23418ad61606e6d26 321 SUPERFAMILY SSF51735 128 288 2.56E-38 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_34220 b3d8bb6b1b3cb6e23418ad61606e6d26 321 SMART SM00829 13 319 1.7E-12 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_34220 b3d8bb6b1b3cb6e23418ad61606e6d26 321 Pfam PF00107 Zinc-binding dehydrogenase 167 281 1.6E-19 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RAM_34220 b3d8bb6b1b3cb6e23418ad61606e6d26 321 SUPERFAMILY SSF50129 11 156 1.73E-31 T 13-10-2018 IPR011032 GroES-like superfamily RAM_34220 b3d8bb6b1b3cb6e23418ad61606e6d26 321 Gene3D G3DSA:3.40.50.720 137 269 9.4E-73 T 13-10-2018 RAM_18455 39ff51bb40ea87c6c84ad79f412b57e5 427 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 275 367 9.4E-13 T 13-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 RAM_18455 39ff51bb40ea87c6c84ad79f412b57e5 427 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 28 274 2.5E-43 T 13-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 RAM_18455 39ff51bb40ea87c6c84ad79f412b57e5 427 Gene3D G3DSA:2.40.37.10 12 407 5.3E-113 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 RAM_18455 39ff51bb40ea87c6c84ad79f412b57e5 427 PRINTS PR01182 Ornithine decarboxylase signature 335 345 3.9E-8 T 13-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 RAM_18455 39ff51bb40ea87c6c84ad79f412b57e5 427 PRINTS PR01182 Ornithine decarboxylase signature 45 72 3.9E-8 T 13-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 RAM_18455 39ff51bb40ea87c6c84ad79f412b57e5 427 PRINTS PR01182 Ornithine decarboxylase signature 89 113 3.9E-8 T 13-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 RAM_18455 39ff51bb40ea87c6c84ad79f412b57e5 427 PRINTS PR01182 Ornithine decarboxylase signature 119 141 3.9E-8 T 13-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 RAM_18455 39ff51bb40ea87c6c84ad79f412b57e5 427 Gene3D G3DSA:3.20.20.10 25 276 5.3E-113 T 13-10-2018 IPR029066 PLP-binding barrel RAM_18455 39ff51bb40ea87c6c84ad79f412b57e5 427 SUPERFAMILY SSF51419 17 275 7.41E-62 T 13-10-2018 IPR029066 PLP-binding barrel RAM_18455 39ff51bb40ea87c6c84ad79f412b57e5 427 SUPERFAMILY SSF50621 257 412 4.19E-37 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 RAM_18455 39ff51bb40ea87c6c84ad79f412b57e5 427 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 67 79 3.4E-8 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RAM_18455 39ff51bb40ea87c6c84ad79f412b57e5 427 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 177 190 3.4E-8 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RAM_18455 39ff51bb40ea87c6c84ad79f412b57e5 427 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 264 283 3.4E-8 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RAM_18455 39ff51bb40ea87c6c84ad79f412b57e5 427 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 47 65 3.4E-8 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RAM_16215 ba7f2fac37964ef7485ae46f31395b36 546 Gene3D G3DSA:3.90.400.10 111 185 3.7E-141 T 13-10-2018 RAM_16215 ba7f2fac37964ef7485ae46f31395b36 546 Pfam PF00128 Alpha amylase, catalytic domain 34 398 4.8E-74 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RAM_16215 ba7f2fac37964ef7485ae46f31395b36 546 SUPERFAMILY SSF51445 11 480 2.18E-123 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_16215 ba7f2fac37964ef7485ae46f31395b36 546 SMART SM00642 19 424 1.7E-111 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RAM_16215 ba7f2fac37964ef7485ae46f31395b36 546 Gene3D G3DSA:3.20.20.80 11 478 3.7E-141 T 13-10-2018 RAM_14085 eb32b5d34042db1cf0bf1643428fd32d 223 SUPERFAMILY SSF51366 1 216 1.41E-63 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 RAM_14085 eb32b5d34042db1cf0bf1643428fd32d 223 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 1 214 2.5E-78 T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 RAM_14085 eb32b5d34042db1cf0bf1643428fd32d 223 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 32 46 - T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 RAM_14085 eb32b5d34042db1cf0bf1643428fd32d 223 Gene3D G3DSA:3.20.20.70 1 219 3.2E-76 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_14085 eb32b5d34042db1cf0bf1643428fd32d 223 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 134 156 - T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 RAM_14085 eb32b5d34042db1cf0bf1643428fd32d 223 Pfam PF00834 Ribulose-phosphate 3 epimerase family 2 201 2.9E-74 T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 RAM_14085 eb32b5d34042db1cf0bf1643428fd32d 223 PIRSF PIRSF001461 1 222 4.4E-87 T 13-10-2018 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 RAM_01445 2dbf164ac143baa047aaf82731dc900d 325 Gene3D G3DSA:3.20.20.100 2 323 1.0E-77 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_01445 2dbf164ac143baa047aaf82731dc900d 325 SUPERFAMILY SSF51430 1 317 7.2E-76 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_01445 2dbf164ac143baa047aaf82731dc900d 325 Pfam PF00248 Aldo/keto reductase family 16 312 5.6E-60 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain RAM_33255 e6c56a8c056d5133b8dad39465936b24 312 SUPERFAMILY SSF55874 215 310 3.56E-10 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_33255 e6c56a8c056d5133b8dad39465936b24 312 Gene3D G3DSA:3.30.565.10 186 312 1.0E-25 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_33255 e6c56a8c056d5133b8dad39465936b24 312 Pfam PF13581 Histidine kinase-like ATPase domain 196 308 4.0E-15 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_33255 e6c56a8c056d5133b8dad39465936b24 312 Pfam PF14417 MEDS: MEthanogen/methylotroph, DcmR Sensory domain 15 158 3.5E-32 T 13-10-2018 IPR025847 MEDS domain RAM_41250 c9a01c1790497008af22a613e2c49d9b 578 SUPERFAMILY SSF53850 42 571 1.81E-58 T 13-10-2018 RAM_41250 c9a01c1790497008af22a613e2c49d9b 578 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 95 427 1.4E-38 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain RAM_41250 c9a01c1790497008af22a613e2c49d9b 578 Gene3D G3DSA:3.90.76.10 79 185 2.4E-175 T 13-10-2018 RAM_41250 c9a01c1790497008af22a613e2c49d9b 578 Gene3D G3DSA:3.10.105.10 291 545 2.4E-175 T 13-10-2018 RAM_41250 c9a01c1790497008af22a613e2c49d9b 578 Gene3D G3DSA:3.40.190.10 47 564 2.4E-175 T 13-10-2018 RAM_05400 3ffcca661e68f908d0e4db6c36b4d86a 473 SUPERFAMILY SSF53187 158 469 1.29E-105 T 13-10-2018 RAM_05400 3ffcca661e68f908d0e4db6c36b4d86a 473 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 322 329 - T 13-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 RAM_05400 3ffcca661e68f908d0e4db6c36b4d86a 473 PRINTS PR00481 Cytosol aminopeptidase signature 259 280 2.0E-47 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RAM_05400 3ffcca661e68f908d0e4db6c36b4d86a 473 PRINTS PR00481 Cytosol aminopeptidase signature 347 362 2.0E-47 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RAM_05400 3ffcca661e68f908d0e4db6c36b4d86a 473 PRINTS PR00481 Cytosol aminopeptidase signature 237 254 2.0E-47 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RAM_05400 3ffcca661e68f908d0e4db6c36b4d86a 473 PRINTS PR00481 Cytosol aminopeptidase signature 296 317 2.0E-47 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RAM_05400 3ffcca661e68f908d0e4db6c36b4d86a 473 PRINTS PR00481 Cytosol aminopeptidase signature 318 338 2.0E-47 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RAM_05400 3ffcca661e68f908d0e4db6c36b4d86a 473 Gene3D G3DSA:3.40.630.10 146 472 4.7E-122 T 13-10-2018 RAM_05400 3ffcca661e68f908d0e4db6c36b4d86a 473 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 163 466 4.0E-113 T 13-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 RAM_35725 576c28f0b9aed7d81326467ea21091db 397 Gene3D G3DSA:3.90.1150.10 12 394 3.5E-26 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_35725 576c28f0b9aed7d81326467ea21091db 397 SUPERFAMILY SSF53383 61 395 1.37E-29 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_35725 576c28f0b9aed7d81326467ea21091db 397 Gene3D G3DSA:3.40.640.10 38 300 3.5E-26 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_13045 826b9c4313f69cb1a933ab402af608f4 552 SUPERFAMILY SSF117457 365 539 4.18E-60 T 13-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 RAM_13045 826b9c4313f69cb1a933ab402af608f4 552 ProSitePatterns PS00163 Fumarate lyases signature. 460 469 - T 13-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 RAM_13045 826b9c4313f69cb1a933ab402af608f4 552 Pfam PF05681 Fumarate hydratase (Fumerase) 51 330 5.4E-82 T 13-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 RAM_13045 826b9c4313f69cb1a933ab402af608f4 552 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 377 540 1.1E-56 T 13-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 RAM_13045 826b9c4313f69cb1a933ab402af608f4 552 Gene3D G3DSA:3.20.130.10 352 540 1.8E-57 T 13-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 RAM_13045 826b9c4313f69cb1a933ab402af608f4 552 PIRSF PIRSF001394 31 549 6.1E-213 T 13-10-2018 IPR011167 Iron-dependent fumarate hydratase GO:0004333|GO:0006091 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384 RAM_13045 826b9c4313f69cb1a933ab402af608f4 552 Pfam PF05683 Fumarase C-terminus 336 541 3.5E-92 T 13-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 RAM_21950 37fabc4842f4c7f321f07216ef1bb8d3 340 Pfam PF13280 WYL domain 153 323 5.5E-28 T 13-10-2018 IPR026881 WYL domain RAM_21950 37fabc4842f4c7f321f07216ef1bb8d3 340 SUPERFAMILY SSF46785 18 76 9.08E-10 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_21950 37fabc4842f4c7f321f07216ef1bb8d3 340 Pfam PF08279 HTH domain 21 76 1.9E-15 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 RAM_21950 37fabc4842f4c7f321f07216ef1bb8d3 340 Gene3D G3DSA:1.10.10.10 10 79 6.2E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_21950 37fabc4842f4c7f321f07216ef1bb8d3 340 PIRSF PIRSF016838 12 72 0.0086 T 13-10-2018 IPR028349 Protein PafC RAM_21950 37fabc4842f4c7f321f07216ef1bb8d3 340 PIRSF PIRSF016838 76 331 2.0E-23 T 13-10-2018 IPR028349 Protein PafC RAM_44805 9171c3069be5166b082bbfee256de4e1 285 SMART SM00342 185 270 1.8E-14 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_44805 9171c3069be5166b082bbfee256de4e1 285 Gene3D G3DSA:1.10.10.60 170 277 3.7E-23 T 13-10-2018 RAM_44805 9171c3069be5166b082bbfee256de4e1 285 Pfam PF12833 Helix-turn-helix domain 192 271 1.0E-21 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_44805 9171c3069be5166b082bbfee256de4e1 285 SUPERFAMILY SSF46689 223 272 4.93E-9 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_35375 0c8deaf01c813c36b0c7d0729caf88aa 244 Pfam PF02517 CAAX protease self-immunity 122 234 5.8E-12 T 13-10-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 RAM_29465 72d734fb9a4a705980464814bf758552 148 Pfam PF13560 Helix-turn-helix domain 9 89 4.8E-21 T 13-10-2018 RAM_29465 72d734fb9a4a705980464814bf758552 148 SUPERFAMILY SSF47413 35 84 8.73E-9 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_29465 72d734fb9a4a705980464814bf758552 148 Gene3D G3DSA:1.10.260.40 8 101 2.6E-9 T 13-10-2018 RAM_29465 72d734fb9a4a705980464814bf758552 148 SMART SM00530 13 86 2.0E-7 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_11105 2ddad3cb9242ebaab158e31c2f710994 358 TIGRFAM TIGR03160 cobT_DBIPRT: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 15 348 4.2E-116 T 13-10-2018 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 RAM_11105 2ddad3cb9242ebaab158e31c2f710994 358 Gene3D G3DSA:1.10.1610.10 11 339 3.0E-115 T 13-10-2018 IPR023195 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 RAM_11105 2ddad3cb9242ebaab158e31c2f710994 358 Hamap MF_00230 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [cobT]. 13 350 34.934 T 13-10-2018 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 RAM_11105 2ddad3cb9242ebaab158e31c2f710994 358 SUPERFAMILY SSF52733 9 349 2.75E-104 T 13-10-2018 IPR036087 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like superfamily GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 RAM_11105 2ddad3cb9242ebaab158e31c2f710994 358 Pfam PF02277 Phosphoribosyltransferase 11 348 3.5E-124 T 13-10-2018 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 RAM_11105 2ddad3cb9242ebaab158e31c2f710994 358 Gene3D G3DSA:3.40.50.10210 58 331 3.0E-115 T 13-10-2018 RAM_08605 4025579f8d9cdce37ad5e663d994609e 532 Gene3D G3DSA:3.40.50.720 10 308 1.2E-119 T 13-10-2018 RAM_08605 4025579f8d9cdce37ad5e663d994609e 532 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 110 284 2.5E-62 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 RAM_08605 4025579f8d9cdce37ad5e663d994609e 532 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 195 217 - T 13-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site RAM_08605 4025579f8d9cdce37ad5e663d994609e 532 SUPERFAMILY SSF143548 324 453 3.14E-31 T 13-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 RAM_08605 4025579f8d9cdce37ad5e663d994609e 532 TIGRFAM TIGR01327 PGDH: phosphoglycerate dehydrogenase 9 530 6.1E-184 T 13-10-2018 IPR006236 D-3-phosphoglycerate dehydrogenase GO:0004617|GO:0006564 KEGG: 00260+1.1.1.95|KEGG: 00680+1.1.1.95|Reactome: R-HSA-977347 RAM_08605 4025579f8d9cdce37ad5e663d994609e 532 Gene3D G3DSA:3.40.50.720 101 282 1.2E-119 T 13-10-2018 RAM_08605 4025579f8d9cdce37ad5e663d994609e 532 Gene3D G3DSA:3.30.1330.90 319 457 2.0E-41 T 13-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 RAM_08605 4025579f8d9cdce37ad5e663d994609e 532 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 9 316 8.0E-33 T 13-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 RAM_08605 4025579f8d9cdce37ad5e663d994609e 532 Gene3D G3DSA:3.30.70.260 458 532 7.6E-22 T 13-10-2018 RAM_08605 4025579f8d9cdce37ad5e663d994609e 532 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 147 174 - T 13-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 RAM_08605 4025579f8d9cdce37ad5e663d994609e 532 Pfam PF01842 ACT domain 458 517 1.4E-11 T 13-10-2018 IPR002912 ACT domain RAM_08605 4025579f8d9cdce37ad5e663d994609e 532 SUPERFAMILY SSF52283 6 137 8.51E-37 T 13-10-2018 RAM_08605 4025579f8d9cdce37ad5e663d994609e 532 SUPERFAMILY SSF51735 103 285 1.07E-59 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_08605 4025579f8d9cdce37ad5e663d994609e 532 SUPERFAMILY SSF55021 456 530 6.87E-15 T 13-10-2018 RAM_08605 4025579f8d9cdce37ad5e663d994609e 532 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 224 240 - T 13-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site RAM_31530 25e9fe9339ba2c79f3a71c3a29be7d1d 541 ProSitePatterns PS00095 C-5 cytosine-specific DNA methylases C-terminal signature. 510 528 - T 13-10-2018 IPR031303 DNA methylase, C-5 cytosine-specific, conserved site KEGG: 00270+2.1.1.37 RAM_31530 25e9fe9339ba2c79f3a71c3a29be7d1d 541 Pfam PF00145 C-5 cytosine-specific DNA methylase 9 192 1.4E-8 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 RAM_31530 25e9fe9339ba2c79f3a71c3a29be7d1d 541 SUPERFAMILY SSF53335 6 531 1.95E-39 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_31530 25e9fe9339ba2c79f3a71c3a29be7d1d 541 Gene3D G3DSA:3.40.50.150 1 207 1.1E-25 T 13-10-2018 RAM_20135 9040910ef695a4f35581107f96c92ec5 391 Gene3D G3DSA:3.20.20.120 116 347 4.7E-55 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RAM_20135 9040910ef695a4f35581107f96c92ec5 391 Pfam PF13378 Enolase C-terminal domain-like 142 349 1.5E-42 T 13-10-2018 IPR029065 Enolase C-terminal domain-like RAM_20135 9040910ef695a4f35581107f96c92ec5 391 SUPERFAMILY SSF51604 106 353 8.12E-49 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RAM_20135 9040910ef695a4f35581107f96c92ec5 391 SMART SM00922 137 239 3.3E-13 T 13-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal RAM_20135 9040910ef695a4f35581107f96c92ec5 391 Gene3D G3DSA:3.30.390.10 1 115 3.6E-20 T 13-10-2018 IPR029017 Enolase-like, N-terminal RAM_20135 9040910ef695a4f35581107f96c92ec5 391 SUPERFAMILY SSF54826 1 122 4.04E-23 T 13-10-2018 RAM_20135 9040910ef695a4f35581107f96c92ec5 391 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 32 118 3.0E-8 T 13-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain RAM_41620 3d6548c5f19a50a9933a7f2399d0b1fc 400 TIGRFAM TIGR01127 ilvA_1Cterm: threonine ammonia-lyase 23 399 1.7E-125 T 13-10-2018 IPR005789 Threonine dehydratase, catabolic GO:0004794|GO:0006567 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 RAM_41620 3d6548c5f19a50a9933a7f2399d0b1fc 400 SUPERFAMILY SSF53686 5 311 1.28E-89 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RAM_41620 3d6548c5f19a50a9933a7f2399d0b1fc 400 Gene3D G3DSA:3.40.50.1100 9 308 8.7E-110 T 13-10-2018 RAM_41620 3d6548c5f19a50a9933a7f2399d0b1fc 400 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 44 57 - T 13-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 RAM_41620 3d6548c5f19a50a9933a7f2399d0b1fc 400 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 18 304 4.7E-80 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RAM_41620 3d6548c5f19a50a9933a7f2399d0b1fc 400 SUPERFAMILY SSF55021 328 384 1.34E-5 T 13-10-2018 RAM_41620 3d6548c5f19a50a9933a7f2399d0b1fc 400 Gene3D G3DSA:3.40.50.1100 52 148 8.7E-110 T 13-10-2018 RAM_41310 2177c126a9cd6939b507cbc1d8e9d892 518 SUPERFAMILY SSF161098 250 510 1.2E-36 T 13-10-2018 IPR035906 MetI-like superfamily RAM_41310 2177c126a9cd6939b507cbc1d8e9d892 518 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 59 223 2.2E-12 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_41310 2177c126a9cd6939b507cbc1d8e9d892 518 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 375 508 1.6E-9 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_41310 2177c126a9cd6939b507cbc1d8e9d892 518 Gene3D G3DSA:1.10.3720.10 251 513 1.5E-38 T 13-10-2018 IPR035906 MetI-like superfamily RAM_41310 2177c126a9cd6939b507cbc1d8e9d892 518 Gene3D G3DSA:1.10.3720.10 1 236 1.6E-44 T 13-10-2018 IPR035906 MetI-like superfamily RAM_41310 2177c126a9cd6939b507cbc1d8e9d892 518 SUPERFAMILY SSF161098 3 232 9.16E-39 T 13-10-2018 IPR035906 MetI-like superfamily RAM_43930 c8bddf8893b9589c7e0df1a17c024e26 397 SUPERFAMILY SSF53218 172 316 9.16E-36 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily RAM_43930 c8bddf8893b9589c7e0df1a17c024e26 397 Gene3D G3DSA:3.40.980.10 170 320 1.5E-125 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily RAM_43930 c8bddf8893b9589c7e0df1a17c024e26 397 Pfam PF03454 MoeA C-terminal region (domain IV) 324 397 6.5E-16 T 13-10-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RAM_43930 c8bddf8893b9589c7e0df1a17c024e26 397 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 172 307 1.5E-28 T 13-10-2018 IPR001453 MoaB/Mog domain RAM_43930 c8bddf8893b9589c7e0df1a17c024e26 397 Pfam PF00994 Probable molybdopterin binding domain 176 309 9.4E-22 T 13-10-2018 IPR001453 MoaB/Mog domain RAM_43930 c8bddf8893b9589c7e0df1a17c024e26 397 Pfam PF03453 MoeA N-terminal region (domain I and II) 2 162 1.2E-44 T 13-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RAM_43930 c8bddf8893b9589c7e0df1a17c024e26 397 Gene3D G3DSA:3.90.105.10 21 169 1.5E-125 T 13-10-2018 RAM_43930 c8bddf8893b9589c7e0df1a17c024e26 397 Gene3D G3DSA:2.170.190.11 44 136 1.5E-125 T 13-10-2018 RAM_43930 c8bddf8893b9589c7e0df1a17c024e26 397 Gene3D G3DSA:2.40.340.10 321 392 1.5E-125 T 13-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RAM_43930 c8bddf8893b9589c7e0df1a17c024e26 397 SMART SM00852 175 311 5.2E-30 T 13-10-2018 IPR001453 MoaB/Mog domain RAM_43930 c8bddf8893b9589c7e0df1a17c024e26 397 SUPERFAMILY SSF63882 2 170 6.15E-51 T 13-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RAM_43930 c8bddf8893b9589c7e0df1a17c024e26 397 SUPERFAMILY SSF63867 320 397 1.06E-17 T 13-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RAM_45510 eb6c4a531d561bafa5fd09be52f785cd 158 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 40 56 2.9E-11 T 13-10-2018 IPR002177 DNA-binding protein Dps RAM_45510 eb6c4a531d561bafa5fd09be52f785cd 158 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 64 80 2.9E-11 T 13-10-2018 IPR002177 DNA-binding protein Dps RAM_45510 eb6c4a531d561bafa5fd09be52f785cd 158 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 135 153 2.9E-11 T 13-10-2018 IPR002177 DNA-binding protein Dps RAM_45510 eb6c4a531d561bafa5fd09be52f785cd 158 Gene3D G3DSA:1.20.1260.10 2 158 4.0E-46 T 13-10-2018 IPR012347 Ferritin-like RAM_45510 eb6c4a531d561bafa5fd09be52f785cd 158 SUPERFAMILY SSF47240 7 155 4.01E-44 T 13-10-2018 IPR009078 Ferritin-like superfamily RAM_45510 eb6c4a531d561bafa5fd09be52f785cd 158 PIRSF PIRSF005900 2 158 1.6E-43 T 13-10-2018 IPR002177 DNA-binding protein Dps RAM_45510 eb6c4a531d561bafa5fd09be52f785cd 158 Pfam PF00210 Ferritin-like domain 20 156 8.1E-23 T 13-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 RAM_45510 eb6c4a531d561bafa5fd09be52f785cd 158 ProSitePatterns PS00819 Dps protein family signature 2. 66 80 - T 13-10-2018 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 RAM_35235 1318ae69bf6c44fe76bdcf2c5c001b9f 550 Gene3D G3DSA:3.50.50.60 155 299 4.6E-20 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_35235 1318ae69bf6c44fe76bdcf2c5c001b9f 550 Pfam PF05199 GMC oxidoreductase 451 508 2.0E-11 T 13-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 RAM_35235 1318ae69bf6c44fe76bdcf2c5c001b9f 550 Pfam PF00732 GMC oxidoreductase 9 258 2.2E-17 T 13-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 RAM_35235 1318ae69bf6c44fe76bdcf2c5c001b9f 550 Gene3D G3DSA:3.50.50.60 427 517 1.1E-15 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_35235 1318ae69bf6c44fe76bdcf2c5c001b9f 550 Gene3D G3DSA:3.50.50.60 52 150 6.3E-6 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_35235 1318ae69bf6c44fe76bdcf2c5c001b9f 550 Gene3D G3DSA:3.50.50.60 5 51 6.3E-11 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_35235 1318ae69bf6c44fe76bdcf2c5c001b9f 550 SUPERFAMILY SSF51905 6 516 1.3E-44 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_27275 7917e35169af9313c42abb2ac90026b5 613 Pfam PF00501 AMP-binding enzyme 37 457 9.3E-72 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_27275 7917e35169af9313c42abb2ac90026b5 613 SUPERFAMILY SSF56801 27 554 1.01E-114 T 13-10-2018 RAM_27275 7917e35169af9313c42abb2ac90026b5 613 ProSitePatterns PS00455 Putative AMP-binding domain signature. 214 225 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_27275 7917e35169af9313c42abb2ac90026b5 613 Pfam PF13193 AMP-binding enzyme C-terminal domain 467 542 5.0E-16 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_27275 7917e35169af9313c42abb2ac90026b5 613 Gene3D G3DSA:3.30.300.30 451 558 7.8E-28 T 13-10-2018 RAM_27275 7917e35169af9313c42abb2ac90026b5 613 Gene3D G3DSA:3.40.50.12780 25 450 2.9E-80 T 13-10-2018 RAM_25090 4b05df4d54cd68ae17e2a78d46538907 543 ProSitePatterns PS00211 ABC transporters family signature. 466 480 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_25090 4b05df4d54cd68ae17e2a78d46538907 543 SUPERFAMILY SSF52540 7 232 9.94E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_25090 4b05df4d54cd68ae17e2a78d46538907 543 SUPERFAMILY SSF52540 373 541 1.33E-29 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_25090 4b05df4d54cd68ae17e2a78d46538907 543 SMART SM00382 31 234 4.2E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_25090 4b05df4d54cd68ae17e2a78d46538907 543 SMART SM00382 377 539 8.8E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_25090 4b05df4d54cd68ae17e2a78d46538907 543 ProSitePatterns PS00211 ABC transporters family signature. 162 176 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_25090 4b05df4d54cd68ae17e2a78d46538907 543 Gene3D G3DSA:3.40.50.300 5 290 8.3E-64 T 13-10-2018 RAM_25090 4b05df4d54cd68ae17e2a78d46538907 543 Gene3D G3DSA:3.40.50.300 367 542 8.4E-32 T 13-10-2018 RAM_25090 4b05df4d54cd68ae17e2a78d46538907 543 Pfam PF00005 ABC transporter 22 190 3.6E-23 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_25090 4b05df4d54cd68ae17e2a78d46538907 543 Pfam PF00005 ABC transporter 373 494 2.2E-17 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_37365 2ad1f4c18c8a8a9287d685f170a04634 393 SUPERFAMILY SSF89796 2 386 4.84E-138 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily RAM_37365 2ad1f4c18c8a8a9287d685f170a04634 393 Gene3D G3DSA:3.40.50.10540 4 386 1.8E-144 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily RAM_37365 2ad1f4c18c8a8a9287d685f170a04634 393 Gene3D G3DSA:3.30.1540.10 236 327 1.8E-144 T 13-10-2018 RAM_37365 2ad1f4c18c8a8a9287d685f170a04634 393 Pfam PF02515 CoA-transferase family III 5 375 1.4E-133 T 13-10-2018 IPR003673 CoA-transferase family III GO:0003824 RAM_25645 f8b866c48872782a8bc089f898881374 267 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_25645 f8b866c48872782a8bc089f898881374 267 Gene3D G3DSA:3.40.50.300 1 256 1.3E-70 T 13-10-2018 RAM_25645 f8b866c48872782a8bc089f898881374 267 SUPERFAMILY SSF52540 3 230 1.04E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_25645 f8b866c48872782a8bc089f898881374 267 SMART SM00382 29 218 4.6E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_25645 f8b866c48872782a8bc089f898881374 267 Pfam PF00005 ABC transporter 21 168 1.2E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_08120 0fa060a17b61dda379a9fcf71381b4d1 166 SMART SM00347 46 147 9.3E-22 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_08120 0fa060a17b61dda379a9fcf71381b4d1 166 Pfam PF12802 MarR family 52 111 6.8E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_08120 0fa060a17b61dda379a9fcf71381b4d1 166 ProSitePatterns PS01117 MarR-type HTH domain signature. 87 121 - T 13-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site RAM_08120 0fa060a17b61dda379a9fcf71381b4d1 166 PRINTS PR00598 Bacterial regulatory protein MarR family signature 108 124 1.1E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_08120 0fa060a17b61dda379a9fcf71381b4d1 166 PRINTS PR00598 Bacterial regulatory protein MarR family signature 89 104 1.1E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_08120 0fa060a17b61dda379a9fcf71381b4d1 166 PRINTS PR00598 Bacterial regulatory protein MarR family signature 137 157 1.1E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_08120 0fa060a17b61dda379a9fcf71381b4d1 166 SUPERFAMILY SSF46785 30 161 6.34E-28 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_08120 0fa060a17b61dda379a9fcf71381b4d1 166 Gene3D G3DSA:1.10.10.10 23 166 3.5E-37 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_17835 d707a3b688eab40d7fa8394b942a53b5 916 SUPERFAMILY SSF46894 842 910 3.74E-16 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_17835 d707a3b688eab40d7fa8394b942a53b5 916 Gene3D G3DSA:3.40.50.300 2 166 3.1E-7 T 13-10-2018 RAM_17835 d707a3b688eab40d7fa8394b942a53b5 916 Pfam PF00196 Bacterial regulatory proteins, luxR family 854 906 7.7E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_17835 d707a3b688eab40d7fa8394b942a53b5 916 Gene3D G3DSA:1.10.10.10 806 913 1.1E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_17835 d707a3b688eab40d7fa8394b942a53b5 916 Pfam PF13191 AAA ATPase domain 7 163 8.5E-21 T 13-10-2018 RAM_17835 d707a3b688eab40d7fa8394b942a53b5 916 SMART SM00421 852 909 1.8E-20 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_17835 d707a3b688eab40d7fa8394b942a53b5 916 SUPERFAMILY SSF52540 4 232 6.55E-9 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_17835 d707a3b688eab40d7fa8394b942a53b5 916 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 855 869 1.8E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_17835 d707a3b688eab40d7fa8394b942a53b5 916 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 885 897 1.8E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_17835 d707a3b688eab40d7fa8394b942a53b5 916 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 869 885 1.8E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_15940 439a45dd01e14fcab1b211f05f996e03 208 Gene3D G3DSA:1.10.10.60 21 64 1.8E-20 T 13-10-2018 RAM_15940 439a45dd01e14fcab1b211f05f996e03 208 SUPERFAMILY SSF48498 92 205 8.9E-20 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_15940 439a45dd01e14fcab1b211f05f996e03 208 Pfam PF00440 Bacterial regulatory proteins, tetR family 24 69 2.1E-19 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_15940 439a45dd01e14fcab1b211f05f996e03 208 Gene3D G3DSA:1.10.357.10 65 204 4.9E-34 T 13-10-2018 RAM_15940 439a45dd01e14fcab1b211f05f996e03 208 ProSitePatterns PS01081 TetR-type HTH domain signature. 36 67 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RAM_15940 439a45dd01e14fcab1b211f05f996e03 208 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 45 68 1.1E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_15940 439a45dd01e14fcab1b211f05f996e03 208 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 24 37 1.1E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_15940 439a45dd01e14fcab1b211f05f996e03 208 SUPERFAMILY SSF46689 17 96 5.13E-21 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_37925 2d2c6f0165222da7da4ac31342ecff94 1017 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 918 1002 1.4E-17 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_37925 2d2c6f0165222da7da4ac31342ecff94 1017 Gene3D G3DSA:2.60.40.10 206 326 3.5E-7 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_37925 2d2c6f0165222da7da4ac31342ecff94 1017 SUPERFAMILY SSF50370 879 1016 1.39E-32 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_37925 2d2c6f0165222da7da4ac31342ecff94 1017 Gene3D G3DSA:2.60.120.260 58 205 3.3E-17 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_37925 2d2c6f0165222da7da4ac31342ecff94 1017 Pfam PF00703 Glycosyl hydrolases family 2 207 326 2.6E-5 T 13-10-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RAM_37925 2d2c6f0165222da7da4ac31342ecff94 1017 Gene3D G3DSA:2.80.10.50 876 1016 4.6E-30 T 13-10-2018 RAM_37925 2d2c6f0165222da7da4ac31342ecff94 1017 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 390 551 3.8E-15 T 13-10-2018 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 RAM_37925 2d2c6f0165222da7da4ac31342ecff94 1017 Gene3D G3DSA:3.20.20.80 329 587 3.6E-25 T 13-10-2018 RAM_37925 2d2c6f0165222da7da4ac31342ecff94 1017 SUPERFAMILY SSF49785 64 205 4.25E-18 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_37925 2d2c6f0165222da7da4ac31342ecff94 1017 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 98 201 8.4E-9 T 13-10-2018 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_37925 2d2c6f0165222da7da4ac31342ecff94 1017 SUPERFAMILY SSF51445 323 557 1.76E-24 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_37925 2d2c6f0165222da7da4ac31342ecff94 1017 Gene3D G3DSA:2.60.120.260 774 873 5.2E-12 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_37375 0bf33588d1d3e7e9b3335d97696bb29d 245 SMART SM00345 19 78 5.1E-14 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_37375 0bf33588d1d3e7e9b3335d97696bb29d 245 Gene3D G3DSA:1.10.10.10 13 91 1.9E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_37375 0bf33588d1d3e7e9b3335d97696bb29d 245 Pfam PF00392 Bacterial regulatory proteins, gntR family 16 78 4.9E-16 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_37375 0bf33588d1d3e7e9b3335d97696bb29d 245 SMART SM00866 101 238 4.8E-7 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RAM_37375 0bf33588d1d3e7e9b3335d97696bb29d 245 Pfam PF07702 UTRA domain 133 237 5.4E-14 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RAM_37375 0bf33588d1d3e7e9b3335d97696bb29d 245 Gene3D G3DSA:3.40.1410.10 104 244 6.4E-18 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RAM_37375 0bf33588d1d3e7e9b3335d97696bb29d 245 SUPERFAMILY SSF46785 11 82 1.35E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_37375 0bf33588d1d3e7e9b3335d97696bb29d 245 SUPERFAMILY SSF64288 66 241 2.67E-22 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RAM_31185 739a9cb2fd8f183684e764c01992d1be 401 Pfam PF01757 Acyltransferase family 11 366 6.9E-19 T 13-10-2018 IPR002656 Acyltransferase 3 GO:0016747 RAM_47770 cb9c2e1b10f86271b23be3ad01e509b3 549 Pfam PF05524 PEP-utilising enzyme, N-terminal 13 130 9.4E-20 T 13-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 RAM_47770 cb9c2e1b10f86271b23be3ad01e509b3 549 SUPERFAMILY SSF52009 129 232 1.96E-27 T 13-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 RAM_47770 cb9c2e1b10f86271b23be3ad01e509b3 549 PIRSF PIRSF000732 7 549 6.5E-148 T 13-10-2018 IPR024692 Phosphotransferase system, enzyme I GO:0008965|GO:0009401 RAM_47770 cb9c2e1b10f86271b23be3ad01e509b3 549 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 429 444 4.4E-18 T 13-10-2018 RAM_47770 cb9c2e1b10f86271b23be3ad01e509b3 549 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 285 304 4.4E-18 T 13-10-2018 RAM_47770 cb9c2e1b10f86271b23be3ad01e509b3 549 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 446 461 4.4E-18 T 13-10-2018 RAM_47770 cb9c2e1b10f86271b23be3ad01e509b3 549 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 482 494 4.4E-18 T 13-10-2018 RAM_47770 cb9c2e1b10f86271b23be3ad01e509b3 549 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 254 520 6.2E-80 T 13-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 RAM_47770 cb9c2e1b10f86271b23be3ad01e509b3 549 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 188 199 - T 13-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 RAM_47770 cb9c2e1b10f86271b23be3ad01e509b3 549 SUPERFAMILY SSF47831 40 147 1.11E-18 T 13-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 RAM_47770 cb9c2e1b10f86271b23be3ad01e509b3 549 Gene3D G3DSA:1.10.274.10 31 150 1.5E-51 T 13-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 RAM_47770 cb9c2e1b10f86271b23be3ad01e509b3 549 SUPERFAMILY SSF51621 252 531 6.28E-87 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 RAM_47770 cb9c2e1b10f86271b23be3ad01e509b3 549 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 63 538 9.8E-111 T 13-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 RAM_47770 cb9c2e1b10f86271b23be3ad01e509b3 549 Gene3D G3DSA:3.20.20.60 239 549 4.6E-97 T 13-10-2018 RAM_47770 cb9c2e1b10f86271b23be3ad01e509b3 549 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 429 447 - T 13-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 RAM_47770 cb9c2e1b10f86271b23be3ad01e509b3 549 Gene3D G3DSA:3.50.30.10 14 231 1.5E-51 T 13-10-2018 RAM_47770 cb9c2e1b10f86271b23be3ad01e509b3 549 Pfam PF00391 PEP-utilising enzyme, mobile domain 158 227 1.3E-21 T 13-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RAM_25265 0de7bedb81ea7ee07ce22fa305a9acc2 445 Gene3D G3DSA:3.90.1580.10 170 443 6.0E-61 T 13-10-2018 RAM_25265 0de7bedb81ea7ee07ce22fa305a9acc2 445 SUPERFAMILY SSF109854 13 148 2.62E-19 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_25265 0de7bedb81ea7ee07ce22fa305a9acc2 445 Pfam PF03781 Sulfatase-modifying factor enzyme 1 178 437 3.5E-64 T 13-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 RAM_25265 0de7bedb81ea7ee07ce22fa305a9acc2 445 Hamap MF_02035 Hercynine oxygenase [egtB]. 1 439 51.779 T 13-10-2018 IPR032890 Hercynine oxygenase, Actinobacteria GO:0016491|GO:0052699 KEGG: 00340+1.14.99.50|MetaCyc: PWY-7255 RAM_25265 0de7bedb81ea7ee07ce22fa305a9acc2 445 TIGRFAM TIGR03440 egtB_TIGR03440: ergothioneine biosynthesis protein EgtB 19 436 6.9E-133 T 13-10-2018 IPR017806 Ergothioneine biosynthesis protein EgtB GO:0052699 KEGG: 00340+1.14.99.50|MetaCyc: PWY-7255 RAM_25265 0de7bedb81ea7ee07ce22fa305a9acc2 445 SUPERFAMILY SSF56436 181 439 2.07E-74 T 13-10-2018 IPR016187 C-type lectin fold RAM_25265 0de7bedb81ea7ee07ce22fa305a9acc2 445 Gene3D G3DSA:1.20.120.450 9 154 6.8E-8 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_25265 0de7bedb81ea7ee07ce22fa305a9acc2 445 Pfam PF12867 DinB superfamily 21 152 1.7E-24 T 13-10-2018 IPR024775 DinB-like domain RAM_04100 669e684ec97c9f8884e7d6562df25c97 389 SUPERFAMILY SSF52210 231 385 6.28E-41 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RAM_04100 669e684ec97c9f8884e7d6562df25c97 389 Pfam PF00549 CoA-ligase 256 378 4.2E-12 T 13-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RAM_04100 669e684ec97c9f8884e7d6562df25c97 389 Gene3D G3DSA:3.30.1490.20 21 96 2.1E-78 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 RAM_04100 669e684ec97c9f8884e7d6562df25c97 389 Pfam PF08442 ATP-grasp domain 2 194 8.3E-69 T 13-10-2018 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RAM_04100 669e684ec97c9f8884e7d6562df25c97 389 SUPERFAMILY SSF56059 3 229 1.77E-66 T 13-10-2018 RAM_04100 669e684ec97c9f8884e7d6562df25c97 389 PIRSF PIRSF001554 1 388 3.3E-137 T 13-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RAM_04100 669e684ec97c9f8884e7d6562df25c97 389 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 249 273 - T 13-10-2018 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RAM_04100 669e684ec97c9f8884e7d6562df25c97 389 Gene3D G3DSA:3.30.470.20 3 219 2.1E-78 T 13-10-2018 RAM_04100 669e684ec97c9f8884e7d6562df25c97 389 Hamap MF_00558 Succinate--CoA ligase [ADP-forming] subunit beta [sucC]. 1 386 37.555 T 13-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RAM_04100 669e684ec97c9f8884e7d6562df25c97 389 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 2 385 2.6E-122 T 13-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RAM_04100 669e684ec97c9f8884e7d6562df25c97 389 Gene3D G3DSA:3.40.50.261 232 387 4.5E-46 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RAM_17350 e3589974ade7a7a394c120c6230a1c71 361 Pfam PF00652 Ricin-type beta-trefoil lectin domain 34 140 9.1E-13 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_17350 e3589974ade7a7a394c120c6230a1c71 361 Gene3D G3DSA:2.80.10.50 33 155 2.0E-23 T 13-10-2018 RAM_17350 e3589974ade7a7a394c120c6230a1c71 361 SMART SM00458 32 156 1.9E-5 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_17350 e3589974ade7a7a394c120c6230a1c71 361 SUPERFAMILY SSF55486 187 346 2.3E-6 T 13-10-2018 RAM_17350 e3589974ade7a7a394c120c6230a1c71 361 Gene3D G3DSA:3.40.390.10 193 357 5.6E-5 T 13-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 RAM_17350 e3589974ade7a7a394c120c6230a1c71 361 SUPERFAMILY SSF50370 33 153 1.2E-22 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_29105 d77c967a0b6954d9d2ff9b85e06273d2 126 TIGRFAM TIGR02246 TIGR02246: conserved hypothetical protein 5 75 1.1E-9 T 13-10-2018 IPR011944 Steroid delta5-4-isomerase KEGG: 00140+5.3.3.1|KEGG: 00984+5.3.3.1|MetaCyc: PWY-2582|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-699|MetaCyc: PWY-7299 RAM_29105 d77c967a0b6954d9d2ff9b85e06273d2 126 Pfam PF12680 SnoaL-like domain 7 108 7.2E-15 T 13-10-2018 IPR037401 SnoaL-like domain RAM_29105 d77c967a0b6954d9d2ff9b85e06273d2 126 SUPERFAMILY SSF54427 3 117 1.63E-21 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_29105 d77c967a0b6954d9d2ff9b85e06273d2 126 Gene3D G3DSA:3.10.450.50 2 123 3.7E-21 T 13-10-2018 RAM_31400 54cca8e10f2bf1b7b91903336605b258 204 Gene3D G3DSA:1.10.357.10 5 174 1.3E-34 T 13-10-2018 RAM_31400 54cca8e10f2bf1b7b91903336605b258 204 SUPERFAMILY SSF48498 83 165 1.05E-17 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_31400 54cca8e10f2bf1b7b91903336605b258 204 SUPERFAMILY SSF46689 8 73 5.13E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_31400 54cca8e10f2bf1b7b91903336605b258 204 Pfam PF13305 WHG domain 87 161 7.6E-11 T 13-10-2018 IPR025996 WHG domain RAM_31400 54cca8e10f2bf1b7b91903336605b258 204 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 58 5.2E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_22425 832827411ff4862fb580990cf6b5604b 225 SUPERFAMILY SSF53639 11 219 8.44E-64 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily RAM_22425 832827411ff4862fb580990cf6b5604b 225 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 18 193 1.2E-48 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal RAM_22425 832827411ff4862fb580990cf6b5604b 225 SMART SM01007 16 195 8.0E-64 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal RAM_22425 832827411ff4862fb580990cf6b5604b 225 Gene3D G3DSA:3.40.225.10 9 225 2.4E-67 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily RAM_29135 a155840d3f1c8c4b4bd12a5e8285e9d7 298 PRINTS PR00111 Alpha/beta hydrolase fold signature 237 251 3.0E-9 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_29135 a155840d3f1c8c4b4bd12a5e8285e9d7 298 PRINTS PR00111 Alpha/beta hydrolase fold signature 129 142 3.0E-9 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_29135 a155840d3f1c8c4b4bd12a5e8285e9d7 298 PRINTS PR00111 Alpha/beta hydrolase fold signature 71 86 3.0E-9 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_29135 a155840d3f1c8c4b4bd12a5e8285e9d7 298 PRINTS PR00111 Alpha/beta hydrolase fold signature 115 128 3.0E-9 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_29135 a155840d3f1c8c4b4bd12a5e8285e9d7 298 SUPERFAMILY SSF53474 22 291 3.22E-57 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_29135 a155840d3f1c8c4b4bd12a5e8285e9d7 298 Pfam PF00561 alpha/beta hydrolase fold 48 279 9.3E-24 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_29135 a155840d3f1c8c4b4bd12a5e8285e9d7 298 Gene3D G3DSA:3.40.50.1820 26 295 4.2E-63 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_38540 66eac89522ba2118f8b69b8e55a9fec1 198 Gene3D G3DSA:1.10.1740.10 20 103 1.8E-31 T 13-10-2018 RAM_38540 66eac89522ba2118f8b69b8e55a9fec1 198 SUPERFAMILY SSF88946 20 111 9.03E-22 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_38540 66eac89522ba2118f8b69b8e55a9fec1 198 SUPERFAMILY SSF88659 133 194 1.35E-14 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_38540 66eac89522ba2118f8b69b8e55a9fec1 198 Pfam PF08281 Sigma-70, region 4 138 190 7.3E-15 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_38540 66eac89522ba2118f8b69b8e55a9fec1 198 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 35 194 3.8E-24 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_38540 66eac89522ba2118f8b69b8e55a9fec1 198 Gene3D G3DSA:1.10.10.10 105 197 2.0E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_38540 66eac89522ba2118f8b69b8e55a9fec1 198 Pfam PF04542 Sigma-70 region 2 40 106 2.7E-17 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_47320 c5947ccaee96e587b24aee4d9723c300 608 SUPERFAMILY SSF52540 101 291 1.29E-27 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_47320 c5947ccaee96e587b24aee4d9723c300 608 Pfam PF00176 SNF2 family N-terminal domain 162 350 2.5E-18 T 13-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 RAM_47320 c5947ccaee96e587b24aee4d9723c300 608 Gene3D G3DSA:3.40.50.300 326 606 2.9E-26 T 13-10-2018 RAM_47320 c5947ccaee96e587b24aee4d9723c300 608 SUPERFAMILY SSF52540 232 575 4.79E-26 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_47320 c5947ccaee96e587b24aee4d9723c300 608 SMART SM00487 118 297 1.4E-8 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RAM_47320 c5947ccaee96e587b24aee4d9723c300 608 Gene3D G3DSA:3.40.50.10810 135 318 3.7E-20 T 13-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily RAM_34970 f0ad8e802e43b1ca68a48392745096b3 206 SUPERFAMILY SSF52833 6 177 2.4E-21 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RAM_34970 f0ad8e802e43b1ca68a48392745096b3 206 Pfam PF01323 DSBA-like thioredoxin domain 9 164 1.0E-8 T 13-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 RAM_34970 f0ad8e802e43b1ca68a48392745096b3 206 Gene3D G3DSA:3.40.30.10 1 206 1.7E-72 T 13-10-2018 RAM_02515 055e32262cb3ab0718ad16ed59f9b832 234 SUPERFAMILY SSF52540 4 225 3.22E-72 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_02515 055e32262cb3ab0718ad16ed59f9b832 234 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_02515 055e32262cb3ab0718ad16ed59f9b832 234 Gene3D G3DSA:3.40.50.300 2 232 3.6E-63 T 13-10-2018 RAM_02515 055e32262cb3ab0718ad16ed59f9b832 234 Pfam PF00005 ABC transporter 24 172 2.0E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_02515 055e32262cb3ab0718ad16ed59f9b832 234 SMART SM00382 33 220 8.9E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_13005 f135bfcd411b318bd01af65a7b96c219 544 ProSitePatterns PS00455 Putative AMP-binding domain signature. 175 186 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_13005 f135bfcd411b318bd01af65a7b96c219 544 Pfam PF00501 AMP-binding enzyme 16 437 6.0E-62 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_13005 f135bfcd411b318bd01af65a7b96c219 544 Gene3D G3DSA:3.40.50.12780 7 432 3.4E-81 T 13-10-2018 RAM_13005 f135bfcd411b318bd01af65a7b96c219 544 Gene3D G3DSA:3.30.300.30 434 542 1.3E-23 T 13-10-2018 RAM_13005 f135bfcd411b318bd01af65a7b96c219 544 Pfam PF13193 AMP-binding enzyme C-terminal domain 448 523 2.4E-15 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_13005 f135bfcd411b318bd01af65a7b96c219 544 SUPERFAMILY SSF56801 4 535 1.24E-112 T 13-10-2018 RAM_45145 423f8b8d4719dca78cbfd2f19d566c15 738 TIGRFAM TIGR01104 V_PPase: V-type H(+)-translocating pyrophosphatase 1 692 1.2E-205 T 13-10-2018 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0016020|GO:1902600 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 RAM_45145 423f8b8d4719dca78cbfd2f19d566c15 738 Pfam PF03030 Inorganic H+ pyrophosphatase 5 686 3.6E-240 T 13-10-2018 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0016020|GO:1902600 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 RAM_45145 423f8b8d4719dca78cbfd2f19d566c15 738 PIRSF PIRSF001265 1 699 1.6E-246 T 13-10-2018 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0016020|GO:1902600 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 RAM_45145 423f8b8d4719dca78cbfd2f19d566c15 738 Hamap MF_01129 Putative K(+)-stimulated pyrophosphate-energized sodium pump [hppA]. 1 691 23.793 T 13-10-2018 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0016020|GO:1902600 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 RAM_35285 52c54fc747b0bd1d4a95034188e6a222 414 Pfam PF04542 Sigma-70 region 2 9 73 4.6E-8 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_35285 52c54fc747b0bd1d4a95034188e6a222 414 Gene3D G3DSA:1.10.10.10 116 165 9.3E-7 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_35285 52c54fc747b0bd1d4a95034188e6a222 414 Pfam PF08281 Sigma-70, region 4 110 158 5.3E-8 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_35285 52c54fc747b0bd1d4a95034188e6a222 414 SUPERFAMILY SSF88946 6 90 1.45E-10 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_35285 52c54fc747b0bd1d4a95034188e6a222 414 SUPERFAMILY SSF88659 105 161 1.05E-7 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_29920 69dd244c33343e8c8ede834db86c1250 139 Pfam PF04075 F420H(2)-dependent quinone reductase 20 107 3.9E-7 T 13-10-2018 IPR004378 F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 RAM_29920 69dd244c33343e8c8ede834db86c1250 139 Gene3D G3DSA:2.30.110.10 11 112 4.3E-12 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_29920 69dd244c33343e8c8ede834db86c1250 139 TIGRFAM TIGR00026 hi_GC_TIGR00026: deazaflavin-dependent oxidoreductase, nitroreductase family 19 104 1.6E-14 T 13-10-2018 IPR004378 F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 RAM_29995 4e04d401953257d9347dd75226e27d9a 428 Pfam PF01547 Bacterial extracellular solute-binding protein 38 334 1.3E-14 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein RAM_29995 4e04d401953257d9347dd75226e27d9a 428 Gene3D G3DSA:3.40.190.10 138 400 7.1E-38 T 13-10-2018 RAM_29995 4e04d401953257d9347dd75226e27d9a 428 Gene3D G3DSA:3.40.190.10 44 364 7.1E-38 T 13-10-2018 RAM_29995 4e04d401953257d9347dd75226e27d9a 428 SUPERFAMILY SSF53850 24 414 4.51E-34 T 13-10-2018 RAM_42960 49f9bf5950be1fbbdd856f2061dd1a76 780 Gene3D G3DSA:3.50.50.60 3 337 4.2E-121 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_42960 49f9bf5950be1fbbdd856f2061dd1a76 780 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 391 726 7.1E-61 T 13-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 RAM_42960 49f9bf5950be1fbbdd856f2061dd1a76 780 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 279 295 9.0E-7 T 13-10-2018 RAM_42960 49f9bf5950be1fbbdd856f2061dd1a76 780 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 264 279 9.0E-7 T 13-10-2018 RAM_42960 49f9bf5950be1fbbdd856f2061dd1a76 780 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 2 24 9.0E-7 T 13-10-2018 RAM_42960 49f9bf5950be1fbbdd856f2061dd1a76 780 Pfam PF01494 FAD binding domain 128 323 9.3E-13 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_42960 49f9bf5950be1fbbdd856f2061dd1a76 780 SUPERFAMILY SSF51905 2 339 1.27E-41 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_42960 49f9bf5950be1fbbdd856f2061dd1a76 780 Gene3D G3DSA:3.30.9.20 40 253 4.2E-121 T 13-10-2018 RAM_42960 49f9bf5950be1fbbdd856f2061dd1a76 780 SUPERFAMILY SSF51395 386 732 1.47E-111 T 13-10-2018 RAM_42960 49f9bf5950be1fbbdd856f2061dd1a76 780 Gene3D G3DSA:3.20.20.70 390 743 7.8E-111 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_27940 8ea280a3f005b5bea939f9a490565624 47 Gene3D G3DSA:2.30.30.440 1 34 3.3E-5 T 13-10-2018 RAM_27940 8ea280a3f005b5bea939f9a490565624 47 Pfam PF08940 Domain of unknown function (DUF1918) 1 30 5.4E-6 T 13-10-2018 IPR015035 Domain of unknown function DUF1918 RAM_25480 18b74007aa598d5858582ac2d50181b0 84 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 80 9.5E-22 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_25480 18b74007aa598d5858582ac2d50181b0 84 Gene3D G3DSA:2.30.170.50 1 84 4.5E-26 T 13-10-2018 RAM_25480 18b74007aa598d5858582ac2d50181b0 84 SUPERFAMILY SSF143800 1 79 3.02E-22 T 13-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_25480 18b74007aa598d5858582ac2d50181b0 84 PRINTS PR01249 Ribosomal protein L31 signature 60 78 3.5E-17 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_25480 18b74007aa598d5858582ac2d50181b0 84 PRINTS PR01249 Ribosomal protein L31 signature 2 19 3.5E-17 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_25480 18b74007aa598d5858582ac2d50181b0 84 PRINTS PR01249 Ribosomal protein L31 signature 45 60 3.5E-17 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_25480 18b74007aa598d5858582ac2d50181b0 84 ProSitePatterns PS01143 Ribosomal protein L31 signature. 49 70 - T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_25480 18b74007aa598d5858582ac2d50181b0 84 Hamap MF_00502 50S ribosomal protein L31 type B [rpmE2]. 1 81 25.622 T 13-10-2018 IPR027493 Ribosomal protein L31 type B GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_25480 18b74007aa598d5858582ac2d50181b0 84 Pfam PF01197 Ribosomal protein L31 1 79 3.8E-30 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_26935 da5a23eda5fa443a589669a3f2bf4d15 262 SUPERFAMILY SSF52096 4 260 6.83E-68 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_26935 da5a23eda5fa443a589669a3f2bf4d15 262 Pfam PF00378 Enoyl-CoA hydratase/isomerase 14 260 5.2E-48 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RAM_26935 da5a23eda5fa443a589669a3f2bf4d15 262 Gene3D G3DSA:3.90.226.10 1 204 7.1E-63 T 13-10-2018 RAM_26935 da5a23eda5fa443a589669a3f2bf4d15 262 Gene3D G3DSA:1.10.12.10 206 262 2.3E-16 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal RAM_26935 da5a23eda5fa443a589669a3f2bf4d15 262 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 104 124 - T 13-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 RAM_02025 0fbca8f6b0fbe24d2d390be1f5ebee97 306 Gene3D G3DSA:3.60.15.10 1 235 7.6E-50 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_02025 0fbca8f6b0fbe24d2d390be1f5ebee97 306 Pfam PF00753 Metallo-beta-lactamase superfamily 29 211 1.2E-21 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_02025 0fbca8f6b0fbe24d2d390be1f5ebee97 306 SMART SM00849 30 211 3.0E-23 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_02025 0fbca8f6b0fbe24d2d390be1f5ebee97 306 SUPERFAMILY SSF56281 7 261 3.11E-58 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_34010 2b2bdc4035a175a751964002a127270b 389 Gene3D G3DSA:2.60.260.20 260 373 1.7E-28 T 13-10-2018 RAM_34010 2b2bdc4035a175a751964002a127270b 389 Gene3D G3DSA:1.10.287.110 1 113 1.1E-30 T 13-10-2018 IPR036869 Chaperone J-domain superfamily RAM_34010 2b2bdc4035a175a751964002a127270b 389 SUPERFAMILY SSF49493 121 263 2.49E-16 T 13-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 RAM_34010 2b2bdc4035a175a751964002a127270b 389 Pfam PF00684 DnaJ central domain 149 213 3.2E-12 T 13-10-2018 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 RAM_34010 2b2bdc4035a175a751964002a127270b 389 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 1 386 36.388 T 13-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 RAM_34010 2b2bdc4035a175a751964002a127270b 389 SUPERFAMILY SSF57938 136 216 3.4E-18 T 13-10-2018 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily RAM_34010 2b2bdc4035a175a751964002a127270b 389 Pfam PF01556 DnaJ C terminal domain 125 344 1.9E-36 T 13-10-2018 IPR002939 Chaperone DnaJ, C-terminal RAM_34010 2b2bdc4035a175a751964002a127270b 389 Gene3D G3DSA:2.60.260.20 119 255 4.4E-32 T 13-10-2018 RAM_34010 2b2bdc4035a175a751964002a127270b 389 SUPERFAMILY SSF49493 264 355 2.09E-18 T 13-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 RAM_34010 2b2bdc4035a175a751964002a127270b 389 Pfam PF00226 DnaJ domain 4 65 2.1E-24 T 13-10-2018 IPR001623 DnaJ domain RAM_34010 2b2bdc4035a175a751964002a127270b 389 Gene3D G3DSA:2.10.230.10 149 213 4.4E-32 T 13-10-2018 RAM_34010 2b2bdc4035a175a751964002a127270b 389 SUPERFAMILY SSF46565 3 103 2.36E-30 T 13-10-2018 IPR036869 Chaperone J-domain superfamily RAM_34010 2b2bdc4035a175a751964002a127270b 389 PRINTS PR00625 DnaJ domain signature 40 60 3.5E-22 T 13-10-2018 IPR001623 DnaJ domain RAM_34010 2b2bdc4035a175a751964002a127270b 389 PRINTS PR00625 DnaJ domain signature 24 39 3.5E-22 T 13-10-2018 IPR001623 DnaJ domain RAM_34010 2b2bdc4035a175a751964002a127270b 389 PRINTS PR00625 DnaJ domain signature 60 79 3.5E-22 T 13-10-2018 IPR001623 DnaJ domain RAM_34010 2b2bdc4035a175a751964002a127270b 389 PRINTS PR00625 DnaJ domain signature 6 24 3.5E-22 T 13-10-2018 IPR001623 DnaJ domain RAM_34010 2b2bdc4035a175a751964002a127270b 389 SMART SM00271 3 60 2.0E-28 T 13-10-2018 IPR001623 DnaJ domain RAM_08755 a044482353e2759fa8a496781bf56ca8 200 Gene3D G3DSA:3.20.19.10 1 168 2.9E-65 T 13-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 RAM_08755 a044482353e2759fa8a496781bf56ca8 200 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 1 191 38.828 T 13-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 RAM_08755 a044482353e2759fa8a496781bf56ca8 200 SUPERFAMILY SSF52016 1 187 1.86E-50 T 13-10-2018 RAM_08755 a044482353e2759fa8a496781bf56ca8 200 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 1 180 7.2E-54 T 13-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 RAM_08755 a044482353e2759fa8a496781bf56ca8 200 Pfam PF00694 Aconitase C-terminal domain 1 114 1.1E-22 T 13-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 RAM_01295 cd9eaab0a4208e4d1d68c51492fc40c7 527 Gene3D G3DSA:3.30.450.20 196 307 1.1E-18 T 13-10-2018 RAM_01295 cd9eaab0a4208e4d1d68c51492fc40c7 527 SUPERFAMILY SSF55890 317 363 8.76E-11 T 13-10-2018 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB GO:0000155|GO:0000160|GO:0016772 RAM_01295 cd9eaab0a4208e4d1d68c51492fc40c7 527 Pfam PF17203 Single cache domain 3 32 157 2.7E-19 T 13-10-2018 IPR033463 Single cache domain 3 RAM_01295 cd9eaab0a4208e4d1d68c51492fc40c7 527 SUPERFAMILY SSF103190 32 163 8.24E-24 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily RAM_01295 cd9eaab0a4208e4d1d68c51492fc40c7 527 Pfam PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain 315 362 1.6E-11 T 13-10-2018 IPR039506 SpoOB, alpha-helical domain RAM_01295 cd9eaab0a4208e4d1d68c51492fc40c7 527 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 411 509 1.0E-12 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_01295 cd9eaab0a4208e4d1d68c51492fc40c7 527 Gene3D G3DSA:3.30.565.10 375 523 1.8E-22 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_01295 cd9eaab0a4208e4d1d68c51492fc40c7 527 SUPERFAMILY SSF55874 379 521 1.57E-23 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_01295 cd9eaab0a4208e4d1d68c51492fc40c7 527 SMART SM00387 410 523 1.5E-20 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_01295 cd9eaab0a4208e4d1d68c51492fc40c7 527 Gene3D G3DSA:3.30.450.20 27 162 5.9E-38 T 13-10-2018 RAM_01295 cd9eaab0a4208e4d1d68c51492fc40c7 527 PRINTS PR00344 Bacterial sensor protein C-terminal signature 507 520 1.9E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_01295 cd9eaab0a4208e4d1d68c51492fc40c7 527 PRINTS PR00344 Bacterial sensor protein C-terminal signature 451 465 1.9E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_01295 cd9eaab0a4208e4d1d68c51492fc40c7 527 PRINTS PR00344 Bacterial sensor protein C-terminal signature 481 499 1.9E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_30430 d75ef08d1ca0fb4a073e78c7579eaf77 321 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 240 260 3.2E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_30430 d75ef08d1ca0fb4a073e78c7579eaf77 321 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 101 112 3.2E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_30430 d75ef08d1ca0fb4a073e78c7579eaf77 321 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 203 220 3.2E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_30430 d75ef08d1ca0fb4a073e78c7579eaf77 321 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 31 48 3.2E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_30430 d75ef08d1ca0fb4a073e78c7579eaf77 321 Pfam PF00106 short chain dehydrogenase 30 224 5.1E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_30430 d75ef08d1ca0fb4a073e78c7579eaf77 321 Gene3D G3DSA:3.40.50.720 19 317 1.1E-71 T 13-10-2018 RAM_30430 d75ef08d1ca0fb4a073e78c7579eaf77 321 SUPERFAMILY SSF51735 27 277 1.11E-50 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_46675 d14cd34363cd3fb2451bfe2e44975e04 372 Pfam PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 202 339 7.1E-16 T 13-10-2018 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0016758 Reactome: R-HSA-156588 RAM_46675 d14cd34363cd3fb2451bfe2e44975e04 372 Gene3D G3DSA:3.40.50.2000 2 359 1.9E-96 T 13-10-2018 RAM_46675 d14cd34363cd3fb2451bfe2e44975e04 372 SUPERFAMILY SSF53756 2 364 5.34E-70 T 13-10-2018 RAM_46675 d14cd34363cd3fb2451bfe2e44975e04 372 TIGRFAM TIGR01426 MGT: glycosyltransferase, MGT family 201 351 1.0E-32 T 13-10-2018 IPR006326 UDP-glycosyltransferase, MGT GO:0016758|GO:0016999 RAM_46675 d14cd34363cd3fb2451bfe2e44975e04 372 Gene3D G3DSA:3.40.50.2000 190 350 1.9E-96 T 13-10-2018 RAM_35470 5736620944abffc8ec8de530c01f85f4 472 Pfam PF00672 HAMP domain 200 247 4.1E-12 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_35470 5736620944abffc8ec8de530c01f85f4 472 Gene3D G3DSA:3.30.565.10 324 470 3.4E-31 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_35470 5736620944abffc8ec8de530c01f85f4 472 SMART SM00387 362 469 2.9E-29 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_35470 5736620944abffc8ec8de530c01f85f4 472 Gene3D G3DSA:1.20.1480.50 167 254 1.1E-15 T 13-10-2018 RAM_35470 5736620944abffc8ec8de530c01f85f4 472 Gene3D G3DSA:1.10.287.130 255 323 1.5E-16 T 13-10-2018 RAM_35470 5736620944abffc8ec8de530c01f85f4 472 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 363 467 1.1E-18 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_35470 5736620944abffc8ec8de530c01f85f4 472 SUPERFAMILY SSF158472 200 251 1.83E-10 T 13-10-2018 RAM_35470 5736620944abffc8ec8de530c01f85f4 472 SMART SM00388 260 324 6.5E-15 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_35470 5736620944abffc8ec8de530c01f85f4 472 PRINTS PR00344 Bacterial sensor protein C-terminal signature 397 411 9.3E-10 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_35470 5736620944abffc8ec8de530c01f85f4 472 PRINTS PR00344 Bacterial sensor protein C-terminal signature 415 425 9.3E-10 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_35470 5736620944abffc8ec8de530c01f85f4 472 PRINTS PR00344 Bacterial sensor protein C-terminal signature 431 449 9.3E-10 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_35470 5736620944abffc8ec8de530c01f85f4 472 SMART SM00304 200 252 4.1E-15 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_35470 5736620944abffc8ec8de530c01f85f4 472 Pfam PF00512 His Kinase A (phospho-acceptor) domain 261 324 1.0E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_35470 5736620944abffc8ec8de530c01f85f4 472 SUPERFAMILY SSF47384 244 325 8.44E-16 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RAM_35470 5736620944abffc8ec8de530c01f85f4 472 SUPERFAMILY SSF55874 313 467 4.45E-35 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_45355 9c7fd55028fa731e1f847dd44a71ddc3 189 Gene3D G3DSA:3.10.180.10 1 147 2.1E-7 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_45355 9c7fd55028fa731e1f847dd44a71ddc3 189 SUPERFAMILY SSF54593 1 149 2.42E-10 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_45355 9c7fd55028fa731e1f847dd44a71ddc3 189 Pfam PF13468 Glyoxalase-like domain 3 144 4.4E-18 T 13-10-2018 IPR025870 Glyoxalase-like domain RAM_20875 76493ee514f960275e00e8303ecebd7a 119 SUPERFAMILY SSF46785 2 104 4.0E-27 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_20875 76493ee514f960275e00e8303ecebd7a 119 Gene3D G3DSA:1.10.10.10 2 110 2.1E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_20875 76493ee514f960275e00e8303ecebd7a 119 SMART SM00418 10 87 1.2E-17 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_20875 76493ee514f960275e00e8303ecebd7a 119 Pfam PF12840 Helix-turn-helix domain 10 65 1.5E-15 T 13-10-2018 RAM_20875 76493ee514f960275e00e8303ecebd7a 119 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 44 59 1.1E-6 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_20875 76493ee514f960275e00e8303ecebd7a 119 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 59 74 1.1E-6 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_20875 76493ee514f960275e00e8303ecebd7a 119 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 12 27 1.1E-6 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_15420 eb6c47bf39a3cded2aabcfc2119a7c4e 329 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 24 120 3.6E-8 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_15420 eb6c47bf39a3cded2aabcfc2119a7c4e 329 SMART SM00829 9 326 2.5E-12 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_15420 eb6c47bf39a3cded2aabcfc2119a7c4e 329 Gene3D G3DSA:3.40.50.720 136 276 2.1E-92 T 13-10-2018 RAM_15420 eb6c47bf39a3cded2aabcfc2119a7c4e 329 SUPERFAMILY SSF50129 8 156 4.26E-36 T 13-10-2018 IPR011032 GroES-like superfamily RAM_15420 eb6c47bf39a3cded2aabcfc2119a7c4e 329 Pfam PF00107 Zinc-binding dehydrogenase 162 290 2.5E-25 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RAM_15420 eb6c47bf39a3cded2aabcfc2119a7c4e 329 Gene3D G3DSA:3.90.180.10 15 318 2.1E-92 T 13-10-2018 RAM_15420 eb6c47bf39a3cded2aabcfc2119a7c4e 329 SUPERFAMILY SSF51735 130 305 1.87E-37 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_07905 b479716daa95650370334a4cc8eec0ef 351 Pfam PF12833 Helix-turn-helix domain 262 340 3.8E-19 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_07905 b479716daa95650370334a4cc8eec0ef 351 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 32 213 1.9E-35 T 13-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal RAM_07905 b479716daa95650370334a4cc8eec0ef 351 SMART SM00342 256 338 3.5E-22 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_07905 b479716daa95650370334a4cc8eec0ef 351 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 307 322 3.3E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RAM_07905 b479716daa95650370334a4cc8eec0ef 351 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 322 338 3.3E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RAM_07905 b479716daa95650370334a4cc8eec0ef 351 SUPERFAMILY SSF46689 291 342 3.63E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_07905 b479716daa95650370334a4cc8eec0ef 351 Gene3D G3DSA:1.10.10.60 238 345 3.9E-23 T 13-10-2018 RAM_45805 f9b7e9df05071dfa67291f592fa7b9c9 492 Gene3D G3DSA:1.10.287.130 203 336 3.0E-24 T 13-10-2018 RAM_45805 f9b7e9df05071dfa67291f592fa7b9c9 492 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 379 486 1.4E-22 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_45805 f9b7e9df05071dfa67291f592fa7b9c9 492 SUPERFAMILY SSF55874 325 486 7.2E-39 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_45805 f9b7e9df05071dfa67291f592fa7b9c9 492 SMART SM00387 379 490 1.8E-37 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_45805 f9b7e9df05071dfa67291f592fa7b9c9 492 Gene3D G3DSA:3.30.565.10 345 491 3.0E-38 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_45805 f9b7e9df05071dfa67291f592fa7b9c9 492 SUPERFAMILY SSF47384 253 337 1.12E-18 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RAM_45805 f9b7e9df05071dfa67291f592fa7b9c9 492 SMART SM00304 199 261 3.3E-6 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_45805 f9b7e9df05071dfa67291f592fa7b9c9 492 Pfam PF00672 HAMP domain 199 255 3.3E-8 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_45805 f9b7e9df05071dfa67291f592fa7b9c9 492 SMART SM00388 269 336 1.2E-20 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_45805 f9b7e9df05071dfa67291f592fa7b9c9 492 Pfam PF00512 His Kinase A (phospho-acceptor) domain 271 336 5.1E-18 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_45805 f9b7e9df05071dfa67291f592fa7b9c9 492 PRINTS PR00344 Bacterial sensor protein C-terminal signature 451 469 3.0E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_45805 f9b7e9df05071dfa67291f592fa7b9c9 492 PRINTS PR00344 Bacterial sensor protein C-terminal signature 416 430 3.0E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_45805 f9b7e9df05071dfa67291f592fa7b9c9 492 PRINTS PR00344 Bacterial sensor protein C-terminal signature 434 444 3.0E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_31440 fd949184fa77759b8a707079f3302488 247 Gene3D G3DSA:1.10.10.60 142 246 4.1E-20 T 13-10-2018 RAM_31440 fd949184fa77759b8a707079f3302488 247 Gene3D G3DSA:2.60.120.10 10 81 9.3E-6 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_31440 fd949184fa77759b8a707079f3302488 247 SUPERFAMILY SSF51182 13 163 1.6E-12 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RAM_31440 fd949184fa77759b8a707079f3302488 247 SMART SM00342 158 240 1.6E-20 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_31440 fd949184fa77759b8a707079f3302488 247 SUPERFAMILY SSF46689 194 243 4.48E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_31440 fd949184fa77759b8a707079f3302488 247 Pfam PF12833 Helix-turn-helix domain 167 241 1.8E-18 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_31440 fd949184fa77759b8a707079f3302488 247 Pfam PF02311 AraC-like ligand binding domain 13 84 1.3E-6 T 13-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 RAM_24485 efdf27c6f229abd6efde76032f5cdb2b 232 Gene3D G3DSA:1.25.10.110 7 77 9.4E-6 T 13-10-2018 RAM_24485 efdf27c6f229abd6efde76032f5cdb2b 232 SUPERFAMILY SSF48371 13 196 7.97E-16 T 13-10-2018 IPR016024 Armadillo-type fold RAM_24485 efdf27c6f229abd6efde76032f5cdb2b 232 Gene3D G3DSA:1.25.10.110 78 173 7.6E-6 T 13-10-2018 RAM_24485 efdf27c6f229abd6efde76032f5cdb2b 232 Pfam PF13646 HEAT repeats 59 130 1.1E-7 T 13-10-2018 RAM_06050 efa69dbfcdb039aff6ed1ecd69d5c4b8 314 SUPERFAMILY SSF52540 2 240 2.7E-22 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_06050 efa69dbfcdb039aff6ed1ecd69d5c4b8 314 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 7 101 2.3E-8 T 13-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain RAM_06050 efa69dbfcdb039aff6ed1ecd69d5c4b8 314 Gene3D G3DSA:3.40.50.300 1 269 4.3E-33 T 13-10-2018 RAM_36845 9092694b465b014a4dc3ac87bb2de800 100 Pfam PF00805 Pentapeptide repeats (8 copies) 14 51 1.1E-9 T 13-10-2018 IPR001646 Pentapeptide repeat RAM_36845 9092694b465b014a4dc3ac87bb2de800 100 Gene3D G3DSA:2.160.20.100 1 99 1.4E-15 T 13-10-2018 RAM_36845 9092694b465b014a4dc3ac87bb2de800 100 SUPERFAMILY SSF141571 1 74 1.57E-14 T 13-10-2018 RAM_47980 191356731ee8db2372f20cacdaf74176 445 SUPERFAMILY SSF53383 29 417 3.4E-107 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_47980 191356731ee8db2372f20cacdaf74176 445 Gene3D G3DSA:3.40.640.10 88 310 2.4E-132 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_47980 191356731ee8db2372f20cacdaf74176 445 Gene3D G3DSA:3.90.1150.10 41 416 2.4E-132 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_47980 191356731ee8db2372f20cacdaf74176 445 Pfam PF00155 Aminotransferase class I and II 77 412 6.6E-35 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RAM_17540 e1953ca2c117c714a4e5f499e48c1a34 452 Gene3D G3DSA:1.10.1740.10 13 102 2.8E-14 T 13-10-2018 RAM_17540 e1953ca2c117c714a4e5f499e48c1a34 452 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 32 186 1.2E-19 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_17540 e1953ca2c117c714a4e5f499e48c1a34 452 Pfam PF04542 Sigma-70 region 2 36 103 4.0E-12 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_17540 e1953ca2c117c714a4e5f499e48c1a34 452 SUPERFAMILY SSF88659 128 186 1.76E-8 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_17540 e1953ca2c117c714a4e5f499e48c1a34 452 Pfam PF08281 Sigma-70, region 4 135 181 2.5E-7 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_17540 e1953ca2c117c714a4e5f499e48c1a34 452 SUPERFAMILY SSF88946 17 109 1.73E-19 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_17540 e1953ca2c117c714a4e5f499e48c1a34 452 Gene3D G3DSA:1.10.10.10 120 188 7.1E-9 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_20650 401d0717b9110fd2a867efd19a4e8f8d 369 SMART SM00304 92 145 4.5E-12 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_20650 401d0717b9110fd2a867efd19a4e8f8d 369 Gene3D G3DSA:3.30.565.10 222 367 1.4E-28 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_20650 401d0717b9110fd2a867efd19a4e8f8d 369 Gene3D G3DSA:1.10.287.130 96 219 1.6E-22 T 13-10-2018 RAM_20650 401d0717b9110fd2a867efd19a4e8f8d 369 Pfam PF00672 HAMP domain 93 141 3.6E-10 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_20650 401d0717b9110fd2a867efd19a4e8f8d 369 SMART SM00387 254 366 5.0E-25 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_20650 401d0717b9110fd2a867efd19a4e8f8d 369 PRINTS PR00344 Bacterial sensor protein C-terminal signature 350 363 8.0E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_20650 401d0717b9110fd2a867efd19a4e8f8d 369 PRINTS PR00344 Bacterial sensor protein C-terminal signature 291 305 8.0E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_20650 401d0717b9110fd2a867efd19a4e8f8d 369 PRINTS PR00344 Bacterial sensor protein C-terminal signature 309 319 8.0E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_20650 401d0717b9110fd2a867efd19a4e8f8d 369 PRINTS PR00344 Bacterial sensor protein C-terminal signature 326 344 8.0E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_20650 401d0717b9110fd2a867efd19a4e8f8d 369 Pfam PF00512 His Kinase A (phospho-acceptor) domain 153 219 5.0E-9 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_20650 401d0717b9110fd2a867efd19a4e8f8d 369 SUPERFAMILY SSF55874 210 363 9.88E-30 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_20650 401d0717b9110fd2a867efd19a4e8f8d 369 SUPERFAMILY SSF47384 144 219 1.39E-11 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RAM_20650 401d0717b9110fd2a867efd19a4e8f8d 369 SUPERFAMILY SSF158472 93 141 5.62E-8 T 13-10-2018 RAM_20650 401d0717b9110fd2a867efd19a4e8f8d 369 SMART SM00388 153 219 8.2E-11 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_20650 401d0717b9110fd2a867efd19a4e8f8d 369 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 254 364 3.0E-17 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_40300 07e8fb04d8e554786e0fb23520b53049 307 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 72 88 2.5E-10 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_40300 07e8fb04d8e554786e0fb23520b53049 307 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 159 177 2.5E-10 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_40300 07e8fb04d8e554786e0fb23520b53049 307 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 110 134 2.5E-10 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_40300 07e8fb04d8e554786e0fb23520b53049 307 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 10 30 2.5E-10 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_40300 07e8fb04d8e554786e0fb23520b53049 307 Pfam PF02470 MlaD protein 20 94 5.8E-14 T 13-10-2018 IPR003399 Mce/MlaD RAM_40300 07e8fb04d8e554786e0fb23520b53049 307 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 1 270 3.1E-54 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_18710 0baf7f4e9896a46064d0942bf3859d6a 363 Pfam PF07745 Glycosyl hydrolase family 53 63 336 1.4E-57 T 13-10-2018 IPR011683 Glycosyl hydrolase family 53 GO:0015926 RAM_18710 0baf7f4e9896a46064d0942bf3859d6a 363 SUPERFAMILY SSF51445 59 334 5.66E-58 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_18710 0baf7f4e9896a46064d0942bf3859d6a 363 Gene3D G3DSA:3.20.20.80 43 357 1.1E-76 T 13-10-2018 RAM_10445 2505ee5cfaecd32bf5709a2892e3470f 391 Gene3D G3DSA:3.90.1150.10 43 373 6.9E-112 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_10445 2505ee5cfaecd32bf5709a2892e3470f 391 Gene3D G3DSA:3.40.640.10 57 287 6.9E-112 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_10445 2505ee5cfaecd32bf5709a2892e3470f 391 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 236 245 - T 13-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 RAM_10445 2505ee5cfaecd32bf5709a2892e3470f 391 Pfam PF00155 Aminotransferase class I and II 41 381 1.1E-54 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RAM_10445 2505ee5cfaecd32bf5709a2892e3470f 391 SUPERFAMILY SSF53383 39 382 5.72E-87 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_39675 560faf9deb062942479d9e93801eeb8b 195 PIRSF PIRSF016661 13 193 6.6E-39 T 13-10-2018 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 RAM_39675 560faf9deb062942479d9e93801eeb8b 195 Gene3D G3DSA:1.10.1760.20 18 189 6.4E-48 T 13-10-2018 RAM_39675 560faf9deb062942479d9e93801eeb8b 195 Pfam PF02632 BioY family 48 186 6.8E-36 T 13-10-2018 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 RAM_30570 8f5418e7758dd5d161208aebc1351cda 169 Pfam PF03551 Transcriptional regulator PadR-like family 9 83 1.8E-10 T 13-10-2018 IPR005149 Transcription regulator PadR, N-terminal RAM_30570 8f5418e7758dd5d161208aebc1351cda 169 SUPERFAMILY SSF46785 6 168 2.18E-27 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_30570 8f5418e7758dd5d161208aebc1351cda 169 Gene3D G3DSA:1.10.10.10 3 96 3.3E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_22820 db805cb67a01c97da3675cddee065b22 483 Gene3D G3DSA:1.20.1720.10 9 232 7.8E-45 T 13-10-2018 RAM_22820 db805cb67a01c97da3675cddee065b22 483 Gene3D G3DSA:1.20.1250.20 257 481 1.5E-8 T 13-10-2018 RAM_22820 db805cb67a01c97da3675cddee065b22 483 Pfam PF07690 Major Facilitator Superfamily 15 396 1.2E-45 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_22820 db805cb67a01c97da3675cddee065b22 483 SUPERFAMILY SSF103473 8 476 2.22E-56 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_03855 a86ab7e8990a396040b83c499f32e138 241 Pfam PF13847 Methyltransferase domain 66 214 1.0E-28 T 13-10-2018 IPR025714 Methyltransferase domain RAM_03855 a86ab7e8990a396040b83c499f32e138 241 Gene3D G3DSA:3.40.50.150 38 238 1.7E-54 T 13-10-2018 RAM_03855 a86ab7e8990a396040b83c499f32e138 241 SUPERFAMILY SSF53335 54 221 3.71E-42 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_33265 0a53ab418386885559107a3d55f87cbd 143 SUPERFAMILY SSF46785 78 129 9.67E-7 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_33265 0a53ab418386885559107a3d55f87cbd 143 Pfam PF09339 IclR helix-turn-helix domain 80 123 1.1E-10 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RAM_33265 0a53ab418386885559107a3d55f87cbd 143 Gene3D G3DSA:1.10.10.10 77 128 1.8E-8 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_27385 994ce56a1b7412e507901e8d162345a5 488 Gene3D G3DSA:1.20.1720.10 11 221 6.5E-43 T 13-10-2018 RAM_27385 994ce56a1b7412e507901e8d162345a5 488 Pfam PF07690 Major Facilitator Superfamily 14 410 4.4E-42 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_27385 994ce56a1b7412e507901e8d162345a5 488 SUPERFAMILY SSF103473 4 468 8.5E-64 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_27385 994ce56a1b7412e507901e8d162345a5 488 Gene3D G3DSA:1.20.1250.20 257 464 2.7E-21 T 13-10-2018 RAM_27385 994ce56a1b7412e507901e8d162345a5 488 PRINTS PR01036 Tetracycline resistance protein TetB signature 13 37 2.9E-9 T 13-10-2018 RAM_27385 994ce56a1b7412e507901e8d162345a5 488 PRINTS PR01036 Tetracycline resistance protein TetB signature 401 420 2.9E-9 T 13-10-2018 RAM_27385 994ce56a1b7412e507901e8d162345a5 488 PRINTS PR01036 Tetracycline resistance protein TetB signature 104 124 2.9E-9 T 13-10-2018 RAM_27385 994ce56a1b7412e507901e8d162345a5 488 PRINTS PR01036 Tetracycline resistance protein TetB signature 134 158 2.9E-9 T 13-10-2018 RAM_45845 ae662f40077ca2f6d056a29107283a7c 507 SUPERFAMILY SSF51735 8 190 2.8E-47 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_45845 ae662f40077ca2f6d056a29107283a7c 507 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 191 288 8.3E-21 T 13-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RAM_45845 ae662f40077ca2f6d056a29107283a7c 507 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 410 491 3.2E-19 T 13-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RAM_45845 ae662f40077ca2f6d056a29107283a7c 507 SUPERFAMILY SSF48179 190 297 2.04E-25 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RAM_45845 ae662f40077ca2f6d056a29107283a7c 507 Gene3D G3DSA:1.10.1040.50 195 488 8.9E-88 T 13-10-2018 RAM_45845 ae662f40077ca2f6d056a29107283a7c 507 Gene3D G3DSA:3.30.750.190 294 405 8.9E-88 T 13-10-2018 RAM_45845 ae662f40077ca2f6d056a29107283a7c 507 Gene3D G3DSA:3.40.50.720 4 194 6.5E-57 T 13-10-2018 RAM_45845 ae662f40077ca2f6d056a29107283a7c 507 SUPERFAMILY SSF48179 410 491 3.74E-19 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RAM_45845 ae662f40077ca2f6d056a29107283a7c 507 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 11 188 4.8E-52 T 13-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RAM_37335 6734da8226e938c90654d4ce534f7f42 317 SUPERFAMILY SSF52283 12 119 2.3E-6 T 13-10-2018 RAM_37335 6734da8226e938c90654d4ce534f7f42 317 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 216 232 - T 13-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site RAM_37335 6734da8226e938c90654d4ce534f7f42 317 Gene3D G3DSA:3.40.50.720 95 282 1.1E-87 T 13-10-2018 RAM_37335 6734da8226e938c90654d4ce534f7f42 317 SUPERFAMILY SSF51735 99 277 2.4E-51 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_37335 6734da8226e938c90654d4ce534f7f42 317 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 104 277 2.7E-50 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 RAM_37335 6734da8226e938c90654d4ce534f7f42 317 Gene3D G3DSA:3.40.50.720 23 314 1.1E-87 T 13-10-2018 RAM_47485 caa5c00376a9c3044b623a2555f1642a 385 Gene3D G3DSA:3.30.565.10 249 381 1.4E-28 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_47485 caa5c00376a9c3044b623a2555f1642a 385 Pfam PF07730 Histidine kinase 173 238 3.8E-19 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_47485 caa5c00376a9c3044b623a2555f1642a 385 SUPERFAMILY SSF55874 259 381 3.44E-17 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_02615 1504f8fd4060a5f14ed5aed67b4b8b11 558 Hamap MF_01659 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [menD]. 1 551 32.271 T 13-10-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 RAM_02615 1504f8fd4060a5f14ed5aed67b4b8b11 558 Gene3D G3DSA:3.40.50.1220 216 359 3.3E-21 T 13-10-2018 RAM_02615 1504f8fd4060a5f14ed5aed67b4b8b11 558 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 8 178 3.0E-32 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RAM_02615 1504f8fd4060a5f14ed5aed67b4b8b11 558 TIGRFAM TIGR00173 menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase 7 425 1.2E-113 T 13-10-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 RAM_02615 1504f8fd4060a5f14ed5aed67b4b8b11 558 Gene3D G3DSA:3.40.50.970 363 551 2.5E-64 T 13-10-2018 RAM_02615 1504f8fd4060a5f14ed5aed67b4b8b11 558 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 408 525 1.5E-5 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RAM_02615 1504f8fd4060a5f14ed5aed67b4b8b11 558 PIRSF PIRSF004983 1 557 3.6E-139 T 13-10-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 RAM_02615 1504f8fd4060a5f14ed5aed67b4b8b11 558 Gene3D G3DSA:3.40.50.970 2 204 4.9E-71 T 13-10-2018 RAM_02615 1504f8fd4060a5f14ed5aed67b4b8b11 558 SUPERFAMILY SSF52518 364 543 6.55E-22 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_02615 1504f8fd4060a5f14ed5aed67b4b8b11 558 SUPERFAMILY SSF52518 8 181 1.72E-33 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_21385 c0169b585639004a841c3ef6d294e5e3 294 Gene3D G3DSA:3.40.50.150 3 222 1.3E-34 T 13-10-2018 RAM_21385 c0169b585639004a841c3ef6d294e5e3 294 Pfam PF04072 Leucine carboxyl methyltransferase 25 173 1.2E-5 T 13-10-2018 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp GO:0008168|GO:0032259 RAM_21385 c0169b585639004a841c3ef6d294e5e3 294 SUPERFAMILY SSF53335 15 198 9.41E-40 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_39530 aecd1832fc39ea1b666502147eabb0b1 346 Gene3D G3DSA:3.40.50.720 2 107 7.3E-19 T 13-10-2018 RAM_39530 aecd1832fc39ea1b666502147eabb0b1 346 SUPERFAMILY SSF51735 1 99 2.89E-16 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_39530 aecd1832fc39ea1b666502147eabb0b1 346 Pfam PF03435 Saccharopine dehydrogenase NADP binding domain 4 92 9.0E-10 T 13-10-2018 IPR005097 Saccharopine dehydrogenase, NADP binding domain GO:0016491|GO:0055114 RAM_05460 2fad592c74b62d1f9a747fc52dbbf29b 324 Pfam PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase 40 276 1.4E-37 T 13-10-2018 IPR006748 Aminoglycoside/hydroxyurea antibiotic resistance kinase GO:0006468|GO:0016773|GO:0019748 RAM_05460 2fad592c74b62d1f9a747fc52dbbf29b 324 SUPERFAMILY SSF56112 50 287 2.24E-16 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_03875 73c36f6129bcc94b635661ae1834bc05 118 Gene3D G3DSA:1.10.10.10 13 111 3.0E-32 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_03875 73c36f6129bcc94b635661ae1834bc05 118 SUPERFAMILY SSF46785 12 109 1.41E-28 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_03875 73c36f6129bcc94b635661ae1834bc05 118 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 32 47 7.3E-23 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_03875 73c36f6129bcc94b635661ae1834bc05 118 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 54 65 7.3E-23 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_03875 73c36f6129bcc94b635661ae1834bc05 118 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 82 97 7.3E-23 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_03875 73c36f6129bcc94b635661ae1834bc05 118 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 67 82 7.3E-23 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_03875 73c36f6129bcc94b635661ae1834bc05 118 SMART SM00418 30 110 2.8E-33 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_03875 73c36f6129bcc94b635661ae1834bc05 118 ProSitePatterns PS00846 Bacterial regulatory proteins, arsR family signature. 56 74 - T 13-10-2018 IPR018334 ArsR-type transcription regulator, HTH motif GO:0003700|GO:0005622|GO:0006355 RAM_03875 73c36f6129bcc94b635661ae1834bc05 118 Pfam PF01022 Bacterial regulatory protein, arsR family 37 85 3.5E-16 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_33420 f7e4cd2cb37ef5bc26f8f0c8dd9d184d 355 ProSitePatterns PS01173 Lipolytic enzymes "G-D-X-G" family, putative histidine active site. 123 138 - T 13-10-2018 IPR002168 Lipase, GDXG, putative histidine active site GO:0016787 Reactome: R-HSA-163560 RAM_33420 f7e4cd2cb37ef5bc26f8f0c8dd9d184d 355 Gene3D G3DSA:3.40.50.1820 39 354 8.4E-84 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_33420 f7e4cd2cb37ef5bc26f8f0c8dd9d184d 355 SUPERFAMILY SSF53474 80 354 3.38E-68 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_33420 f7e4cd2cb37ef5bc26f8f0c8dd9d184d 355 Pfam PF07859 alpha/beta hydrolase fold 123 330 2.2E-70 T 13-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 RAM_01400 ee6112c20d07a086e448c65737ee8489 542 Gene3D G3DSA:2.60.40.290 27 135 1.0E-30 T 13-10-2018 IPR012291 CBM2, carbohydrate-binding domain superfamily GO:0004553|GO:0030247 RAM_01400 ee6112c20d07a086e448c65737ee8489 542 SMART SM00636 173 527 1.0E-108 T 13-10-2018 IPR011583 Chitinase II GO:0008061 RAM_01400 ee6112c20d07a086e448c65737ee8489 542 SMART SM00637 33 132 6.1E-36 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_01400 ee6112c20d07a086e448c65737ee8489 542 Gene3D G3DSA:3.10.50.10 442 502 7.2E-135 T 13-10-2018 IPR029070 Chitinase insertion domain superfamily RAM_01400 ee6112c20d07a086e448c65737ee8489 542 Pfam PF00553 Cellulose binding domain 34 132 1.7E-24 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_01400 ee6112c20d07a086e448c65737ee8489 542 SUPERFAMILY SSF49384 29 133 6.35E-27 T 13-10-2018 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily GO:0030246 RAM_01400 ee6112c20d07a086e448c65737ee8489 542 Gene3D G3DSA:3.20.20.80 177 528 7.2E-135 T 13-10-2018 RAM_01400 ee6112c20d07a086e448c65737ee8489 542 Pfam PF00704 Glycosyl hydrolases family 18 175 527 6.1E-73 T 13-10-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 RAM_01400 ee6112c20d07a086e448c65737ee8489 542 ProSitePatterns PS00561 CBM2a (carbohydrate-binding type-2) domain signature. 97 110 - T 13-10-2018 IPR018366 Carbohydrate-binding type-2, conserved site GO:0004553|GO:0005975|GO:0030246 RAM_01400 ee6112c20d07a086e448c65737ee8489 542 SUPERFAMILY SSF51445 167 541 1.1E-83 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_01400 ee6112c20d07a086e448c65737ee8489 542 SUPERFAMILY SSF54556 439 498 1.03E-13 T 13-10-2018 IPR029070 Chitinase insertion domain superfamily RAM_39925 b756e2f2b0cca1f61227c24cb6a856ba 412 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 1 409 28.791 T 13-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 RAM_39925 b756e2f2b0cca1f61227c24cb6a856ba 412 PIRSF PIRSF000505 2 410 3.9E-127 T 13-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 RAM_39925 b756e2f2b0cca1f61227c24cb6a856ba 412 Gene3D G3DSA:3.65.10.10 10 226 6.1E-128 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 RAM_39925 b756e2f2b0cca1f61227c24cb6a856ba 412 SUPERFAMILY SSF55205 4 406 3.27E-107 T 13-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 RAM_39925 b756e2f2b0cca1f61227c24cb6a856ba 412 Gene3D G3DSA:3.65.10.10 4 399 6.1E-128 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 RAM_39925 b756e2f2b0cca1f61227c24cb6a856ba 412 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 4 406 3.7E-120 T 13-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 RAM_39925 b756e2f2b0cca1f61227c24cb6a856ba 412 ProSitePatterns PS00885 EPSP synthase signature 2. 322 340 - T 13-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 RAM_39925 b756e2f2b0cca1f61227c24cb6a856ba 412 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 4 403 6.6E-107 T 13-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 RAM_20255 4587504045ea56199706ba778228b308 159 Gene3D G3DSA:3.30.420.40 25 119 4.7E-21 T 13-10-2018 RAM_20255 4587504045ea56199706ba778228b308 159 SUPERFAMILY SSF53067 30 89 1.02E-17 T 13-10-2018 RAM_20255 4587504045ea56199706ba778228b308 159 Pfam PF00480 ROK family 30 92 8.0E-16 T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 RAM_25895 9d28e00fd1f7dfcc539212a59785180b 238 Gene3D G3DSA:1.20.1080.10 1 229 2.0E-61 T 13-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 RAM_25895 9d28e00fd1f7dfcc539212a59785180b 238 PRINTS PR00783 Major intrinsic protein family signature 164 186 5.1E-41 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RAM_25895 9d28e00fd1f7dfcc539212a59785180b 238 PRINTS PR00783 Major intrinsic protein family signature 84 103 5.1E-41 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RAM_25895 9d28e00fd1f7dfcc539212a59785180b 238 PRINTS PR00783 Major intrinsic protein family signature 7 26 5.1E-41 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RAM_25895 9d28e00fd1f7dfcc539212a59785180b 238 PRINTS PR00783 Major intrinsic protein family signature 133 151 5.1E-41 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RAM_25895 9d28e00fd1f7dfcc539212a59785180b 238 PRINTS PR00783 Major intrinsic protein family signature 207 227 5.1E-41 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RAM_25895 9d28e00fd1f7dfcc539212a59785180b 238 PRINTS PR00783 Major intrinsic protein family signature 47 71 5.1E-41 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RAM_25895 9d28e00fd1f7dfcc539212a59785180b 238 SUPERFAMILY SSF81338 5 229 4.06E-55 T 13-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 RAM_25895 9d28e00fd1f7dfcc539212a59785180b 238 ProSitePatterns PS00221 MIP family signature. 65 73 - T 13-10-2018 IPR022357 Major intrinsic protein, conserved site Reactome: R-HSA-432047 RAM_25895 9d28e00fd1f7dfcc539212a59785180b 238 Pfam PF00230 Major intrinsic protein 4 223 2.0E-47 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RAM_03455 6d877a40c8fd3c99a09fef450c8d1dd2 101 SUPERFAMILY SSF54999 5 100 8.5E-37 T 13-10-2018 IPR036838 Ribosomal protein S10 domain superfamily RAM_03455 6d877a40c8fd3c99a09fef450c8d1dd2 101 Pfam PF00338 Ribosomal protein S10p/S20e 7 100 9.4E-35 T 13-10-2018 IPR027486 Ribosomal protein S10 domain RAM_03455 6d877a40c8fd3c99a09fef450c8d1dd2 101 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 4 101 3.1E-46 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_03455 6d877a40c8fd3c99a09fef450c8d1dd2 101 Gene3D G3DSA:3.30.70.600 1 101 2.4E-36 T 13-10-2018 IPR036838 Ribosomal protein S10 domain superfamily RAM_03455 6d877a40c8fd3c99a09fef450c8d1dd2 101 PRINTS PR00971 Ribosomal protein S10 family signature 5 18 3.7E-21 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_03455 6d877a40c8fd3c99a09fef450c8d1dd2 101 PRINTS PR00971 Ribosomal protein S10 family signature 61 75 3.7E-21 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_03455 6d877a40c8fd3c99a09fef450c8d1dd2 101 PRINTS PR00971 Ribosomal protein S10 family signature 40 55 3.7E-21 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_03455 6d877a40c8fd3c99a09fef450c8d1dd2 101 ProSitePatterns PS00361 Ribosomal protein S10 signature. 29 44 - T 13-10-2018 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_03455 6d877a40c8fd3c99a09fef450c8d1dd2 101 SMART SM01403 7 101 2.2E-55 T 13-10-2018 IPR027486 Ribosomal protein S10 domain RAM_03455 6d877a40c8fd3c99a09fef450c8d1dd2 101 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 3 101 24.603 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_24800 31d57ae448845f905b56a1546866e9da 151 Gene3D G3DSA:1.10.10.10 7 58 1.1E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_24800 31d57ae448845f905b56a1546866e9da 151 Pfam PF01037 Lrp/AsnC ligand binding domain 71 142 3.4E-13 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RAM_24800 31d57ae448845f905b56a1546866e9da 151 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 22 33 1.1E-15 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_24800 31d57ae448845f905b56a1546866e9da 151 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 33 52 1.1E-15 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_24800 31d57ae448845f905b56a1546866e9da 151 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 6 22 1.1E-15 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_24800 31d57ae448845f905b56a1546866e9da 151 Pfam PF13404 AsnC-type helix-turn-helix domain 8 47 2.4E-15 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_24800 31d57ae448845f905b56a1546866e9da 151 ProSitePatterns PS00519 AsnC-type HTH domain signature. 24 50 - T 13-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site RAM_24800 31d57ae448845f905b56a1546866e9da 151 Gene3D G3DSA:3.30.70.920 59 139 7.8E-19 T 13-10-2018 RAM_24800 31d57ae448845f905b56a1546866e9da 151 SUPERFAMILY SSF46785 6 65 7.03E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_24800 31d57ae448845f905b56a1546866e9da 151 SMART SM00344 6 113 2.6E-36 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RAM_24800 31d57ae448845f905b56a1546866e9da 151 SUPERFAMILY SSF54909 67 145 1.19E-12 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_20320 dc97205b02e5e7dcb92089d03581f9fd 186 Pfam PF01872 RibD C-terminal domain 3 178 4.8E-17 T 13-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 RAM_20320 dc97205b02e5e7dcb92089d03581f9fd 186 SUPERFAMILY SSF53597 1 184 9.03E-28 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RAM_20320 dc97205b02e5e7dcb92089d03581f9fd 186 Gene3D G3DSA:3.40.430.10 2 182 1.1E-37 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RAM_36480 1cf9f2ab29b3af0aa86d6b5927bc3aa3 63 Pfam PF04149 Domain of unknown function (DUF397) 9 61 1.4E-22 T 13-10-2018 IPR007278 Domain of unknown function DUF397 RAM_30950 dee052281b66e36cac158453fdb7e8cc 220 SUPERFAMILY SSF48498 99 188 8.9E-6 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_30950 dee052281b66e36cac158453fdb7e8cc 220 SUPERFAMILY SSF46689 4 84 1.33E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_30950 dee052281b66e36cac158453fdb7e8cc 220 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 61 3.6E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_30950 dee052281b66e36cac158453fdb7e8cc 220 Gene3D G3DSA:1.10.357.10 4 197 1.5E-20 T 13-10-2018 RAM_30950 dee052281b66e36cac158453fdb7e8cc 220 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 3.1E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_30950 dee052281b66e36cac158453fdb7e8cc 220 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 3.1E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_43020 a40440fd6bd3ac64df4003cc05d74f1f 285 SMART SM00458 159 285 2.3E-26 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_43020 a40440fd6bd3ac64df4003cc05d74f1f 285 Gene3D G3DSA:2.80.10.50 154 285 2.9E-43 T 13-10-2018 RAM_43020 a40440fd6bd3ac64df4003cc05d74f1f 285 SUPERFAMILY SSF50370 160 284 1.44E-38 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_43020 a40440fd6bd3ac64df4003cc05d74f1f 285 Pfam PF00652 Ricin-type beta-trefoil lectin domain 162 282 1.5E-27 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_43020 a40440fd6bd3ac64df4003cc05d74f1f 285 Pfam PF07335 Fungal chitosanase of glycosyl hydrolase group 75 7 148 8.3E-26 T 13-10-2018 IPR009939 Fungal chitosanase GO:0016977 KEGG: 00520+3.2.1.132 RAM_38940 fc297a83bf716d48b7341623f5ac5ba0 383 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 4 26 2.2E-26 T 13-10-2018 RAM_38940 fc297a83bf716d48b7341623f5ac5ba0 383 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 274 289 2.2E-26 T 13-10-2018 RAM_38940 fc297a83bf716d48b7341623f5ac5ba0 383 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 289 305 2.2E-26 T 13-10-2018 RAM_38940 fc297a83bf716d48b7341623f5ac5ba0 383 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 150 165 2.2E-26 T 13-10-2018 RAM_38940 fc297a83bf716d48b7341623f5ac5ba0 383 SUPERFAMILY SSF54373 172 271 9.42E-37 T 13-10-2018 RAM_38940 fc297a83bf716d48b7341623f5ac5ba0 383 Pfam PF01494 FAD binding domain 2 337 5.2E-72 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_38940 fc297a83bf716d48b7341623f5ac5ba0 383 Gene3D G3DSA:3.30.9.10 73 380 4.6E-159 T 13-10-2018 RAM_38940 fc297a83bf716d48b7341623f5ac5ba0 383 Gene3D G3DSA:3.50.50.60 2 346 4.6E-159 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_38940 fc297a83bf716d48b7341623f5ac5ba0 383 SUPERFAMILY SSF51905 3 350 1.55E-50 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_25085 b4e33a1fa1f945df035dd6ad365d6676 158 Gene3D G3DSA:1.10.10.10 14 144 2.2E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_25085 b4e33a1fa1f945df035dd6ad365d6676 158 SMART SM00347 28 128 2.7E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_25085 b4e33a1fa1f945df035dd6ad365d6676 158 Pfam PF12802 MarR family 34 92 2.8E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_25085 b4e33a1fa1f945df035dd6ad365d6676 158 SUPERFAMILY SSF46785 15 136 7.18E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_23225 3c3c351e8b59e3af52949b63ee75e4e0 162 Gene3D G3DSA:3.90.1140.10 5 161 5.8E-8 T 13-10-2018 RAM_23225 3c3c351e8b59e3af52949b63ee75e4e0 162 Pfam PF13563 2'-5' RNA ligase superfamily 12 147 5.5E-11 T 13-10-2018 RAM_02755 c847cc1ccf6ff82eb9878a2fe0e7a755 350 Pfam PF00348 Polyprenyl synthetase 60 301 1.8E-60 T 13-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 RAM_02755 c847cc1ccf6ff82eb9878a2fe0e7a755 350 SUPERFAMILY SSF48576 36 349 1.12E-82 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily RAM_02755 c847cc1ccf6ff82eb9878a2fe0e7a755 350 Gene3D G3DSA:1.10.600.10 22 350 4.9E-104 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily RAM_02755 c847cc1ccf6ff82eb9878a2fe0e7a755 350 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 231 243 - T 13-10-2018 IPR033749 Polyprenyl synthetase, conserved site RAM_45615 09ca86c00d69e76ec7a80178ff074cc0 200 SUPERFAMILY SSF48498 86 196 1.28E-17 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_45615 09ca86c00d69e76ec7a80178ff074cc0 200 Pfam PF16925 Bacterial transcriptional repressor C-terminal 91 186 1.4E-7 T 13-10-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RAM_45615 09ca86c00d69e76ec7a80178ff074cc0 200 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 64 9.6E-12 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_45615 09ca86c00d69e76ec7a80178ff074cc0 200 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 1.7E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_45615 09ca86c00d69e76ec7a80178ff074cc0 200 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 1.7E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_45615 09ca86c00d69e76ec7a80178ff074cc0 200 SUPERFAMILY SSF46689 8 74 2.64E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_45615 09ca86c00d69e76ec7a80178ff074cc0 200 Gene3D G3DSA:1.10.357.10 13 195 5.7E-42 T 13-10-2018 RAM_19045 3a267e2af9eae523ea0d952574c1f981 425 SUPERFAMILY SSF46785 13 73 1.74E-13 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_19045 3a267e2af9eae523ea0d952574c1f981 425 Gene3D G3DSA:1.10.10.10 10 76 2.4E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_19045 3a267e2af9eae523ea0d952574c1f981 425 Gene3D G3DSA:3.30.420.40 77 207 1.3E-32 T 13-10-2018 RAM_19045 3a267e2af9eae523ea0d952574c1f981 425 Pfam PF00480 ROK family 84 398 1.6E-46 T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 RAM_19045 3a267e2af9eae523ea0d952574c1f981 425 SUPERFAMILY SSF53067 81 398 1.6E-48 T 13-10-2018 RAM_19045 3a267e2af9eae523ea0d952574c1f981 425 ProSitePatterns PS01125 ROK family signature. 216 243 - T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 RAM_19045 3a267e2af9eae523ea0d952574c1f981 425 Gene3D G3DSA:3.30.420.40 209 382 6.5E-42 T 13-10-2018 RAM_41590 5b8f5285665af30fa73ebbd634d68256 399 PIRSF PIRSF009283 27 399 4.8E-129 T 13-10-2018 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 RAM_41590 5b8f5285665af30fa73ebbd634d68256 399 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 41 149 7.1E-7 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RAM_41590 5b8f5285665af30fa73ebbd634d68256 399 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 210 353 1.3E-13 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RAM_41590 5b8f5285665af30fa73ebbd634d68256 399 SUPERFAMILY SSF54593 30 386 1.52E-88 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_41590 5b8f5285665af30fa73ebbd634d68256 399 Gene3D G3DSA:3.10.180.10 195 399 9.7E-80 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_41590 5b8f5285665af30fa73ebbd634d68256 399 TIGRFAM TIGR01263 4HPPD: 4-hydroxyphenylpyruvate dioxygenase 39 399 1.4E-128 T 13-10-2018 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 RAM_41590 5b8f5285665af30fa73ebbd634d68256 399 Gene3D G3DSA:3.10.180.10 25 191 3.4E-49 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_42240 294c72a4a615a82c27e9572aafe96903 218 ProSitePatterns PS00622 LuxR-type HTH domain signature. 168 195 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_42240 294c72a4a615a82c27e9572aafe96903 218 Pfam PF00072 Response regulator receiver domain 5 116 4.6E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_42240 294c72a4a615a82c27e9572aafe96903 218 Gene3D G3DSA:3.40.50.12740 3 214 3.7E-69 T 13-10-2018 RAM_42240 294c72a4a615a82c27e9572aafe96903 218 SMART SM00448 3 116 5.3E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_42240 294c72a4a615a82c27e9572aafe96903 218 SMART SM00421 151 208 1.9E-24 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_42240 294c72a4a615a82c27e9572aafe96903 218 Pfam PF00196 Bacterial regulatory proteins, luxR family 153 208 4.0E-18 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_42240 294c72a4a615a82c27e9572aafe96903 218 SUPERFAMILY SSF52172 3 136 1.12E-33 T 13-10-2018 IPR011006 CheY-like superfamily RAM_42240 294c72a4a615a82c27e9572aafe96903 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 168 184 2.6E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_42240 294c72a4a615a82c27e9572aafe96903 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 154 168 2.6E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_42240 294c72a4a615a82c27e9572aafe96903 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 184 196 2.6E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_42240 294c72a4a615a82c27e9572aafe96903 218 SUPERFAMILY SSF46894 144 215 1.09E-20 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_40685 d1f43f8087f9249f818783ca2cf9f193 170 Gene3D G3DSA:3.40.630.30 1 160 1.1E-24 T 13-10-2018 RAM_40685 d1f43f8087f9249f818783ca2cf9f193 170 SUPERFAMILY SSF55729 1 154 1.06E-18 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_40685 d1f43f8087f9249f818783ca2cf9f193 170 Pfam PF00583 Acetyltransferase (GNAT) family 33 149 3.9E-7 T 13-10-2018 IPR000182 GNAT domain RAM_17270 7342bcef656a7cbe0e73d37fba31f591 202 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 69 1.6E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_17270 7342bcef656a7cbe0e73d37fba31f591 202 Gene3D G3DSA:1.10.357.10 12 200 7.0E-18 T 13-10-2018 RAM_17270 7342bcef656a7cbe0e73d37fba31f591 202 SUPERFAMILY SSF46689 12 76 1.15E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_17270 7342bcef656a7cbe0e73d37fba31f591 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 44 67 1.7E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_17270 7342bcef656a7cbe0e73d37fba31f591 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 23 36 1.7E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_35040 597cfda4ba33c0dc46465124f24b38e2 958 Gene3D G3DSA:1.25.40.10 141 366 1.1E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_18110 af5d8353dfdc45a047db39c7be33d072 148 Gene3D G3DSA:3.30.530.20 4 145 7.1E-24 T 13-10-2018 IPR023393 START-like domain superfamily RAM_18110 af5d8353dfdc45a047db39c7be33d072 148 SUPERFAMILY SSF55961 6 143 3.54E-22 T 13-10-2018 RAM_18110 af5d8353dfdc45a047db39c7be33d072 148 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 6 141 1.3E-21 T 13-10-2018 IPR019587 Polyketide cyclase/dehydrase RAM_38040 047190f0e7fff95b05b0b41a413e1eae 376 Pfam PF13692 Glycosyl transferases group 1 193 331 2.0E-27 T 13-10-2018 RAM_38040 047190f0e7fff95b05b0b41a413e1eae 376 Gene3D G3DSA:3.40.50.2000 188 351 1.5E-35 T 13-10-2018 RAM_38040 047190f0e7fff95b05b0b41a413e1eae 376 Pfam PF13439 Glycosyltransferase Family 4 13 180 3.4E-16 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 RAM_38040 047190f0e7fff95b05b0b41a413e1eae 376 Gene3D G3DSA:3.40.50.2000 3 187 2.9E-16 T 13-10-2018 RAM_38040 047190f0e7fff95b05b0b41a413e1eae 376 SUPERFAMILY SSF53756 11 367 3.36E-67 T 13-10-2018 RAM_37090 89937d71aec2f454391fcba4d5a7f5a0 58 Gene3D G3DSA:1.10.12.10 1 57 3.4E-12 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal RAM_37090 89937d71aec2f454391fcba4d5a7f5a0 58 SUPERFAMILY SSF52096 2 49 1.84E-5 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_06750 8d57d8dac61d13eb2123868f78baf972 399 PRINTS PR00385 P450 superfamily signature 338 347 3.6E-8 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_06750 8d57d8dac61d13eb2123868f78baf972 399 PRINTS PR00385 P450 superfamily signature 347 358 3.6E-8 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_06750 8d57d8dac61d13eb2123868f78baf972 399 PRINTS PR00385 P450 superfamily signature 238 255 3.6E-8 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_06750 8d57d8dac61d13eb2123868f78baf972 399 PRINTS PR00385 P450 superfamily signature 270 281 3.6E-8 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_06750 8d57d8dac61d13eb2123868f78baf972 399 Gene3D G3DSA:1.10.630.10 14 399 2.7E-117 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_06750 8d57d8dac61d13eb2123868f78baf972 399 SUPERFAMILY SSF48264 17 398 2.1E-84 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_06750 8d57d8dac61d13eb2123868f78baf972 399 Pfam PF00067 Cytochrome P450 270 367 2.0E-14 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_06750 8d57d8dac61d13eb2123868f78baf972 399 PRINTS PR00359 B-class P450 signature 270 281 4.5E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_06750 8d57d8dac61d13eb2123868f78baf972 399 PRINTS PR00359 B-class P450 signature 316 331 4.5E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_06750 8d57d8dac61d13eb2123868f78baf972 399 PRINTS PR00359 B-class P450 signature 139 155 4.5E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_06750 8d57d8dac61d13eb2123868f78baf972 399 PRINTS PR00359 B-class P450 signature 92 103 4.5E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_06750 8d57d8dac61d13eb2123868f78baf972 399 PRINTS PR00359 B-class P450 signature 156 171 4.5E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_06750 8d57d8dac61d13eb2123868f78baf972 399 PRINTS PR00359 B-class P450 signature 193 215 4.5E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_06750 8d57d8dac61d13eb2123868f78baf972 399 PRINTS PR00359 B-class P450 signature 288 315 4.5E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_06750 8d57d8dac61d13eb2123868f78baf972 399 PRINTS PR00359 B-class P450 signature 338 347 4.5E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_06750 8d57d8dac61d13eb2123868f78baf972 399 PRINTS PR00359 B-class P450 signature 347 358 4.5E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_06750 8d57d8dac61d13eb2123868f78baf972 399 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 340 349 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RAM_30610 528a17b66c38baf8de4a058a46af9473 209 SUPERFAMILY SSF55718 137 203 7.53E-9 T 13-10-2018 IPR036527 SCP2 sterol-binding domain superfamily RAM_30610 528a17b66c38baf8de4a058a46af9473 209 Gene3D G3DSA:3.30.1050.10 126 207 1.3E-8 T 13-10-2018 IPR036527 SCP2 sterol-binding domain superfamily RAM_30610 528a17b66c38baf8de4a058a46af9473 209 Gene3D G3DSA:1.10.10.10 2 105 7.2E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_30610 528a17b66c38baf8de4a058a46af9473 209 Pfam PF02036 SCP-2 sterol transfer family 131 202 1.7E-7 T 13-10-2018 IPR003033 SCP2 sterol-binding domain RAM_30610 528a17b66c38baf8de4a058a46af9473 209 SUPERFAMILY SSF46785 7 104 1.03E-27 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_30610 528a17b66c38baf8de4a058a46af9473 209 Pfam PF01638 HxlR-like helix-turn-helix 19 103 4.0E-22 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type RAM_36905 e93fc79ddf4cb6c035d3ad145a8f41a9 294 PRINTS PR00111 Alpha/beta hydrolase fold signature 111 124 3.2E-22 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_36905 e93fc79ddf4cb6c035d3ad145a8f41a9 294 PRINTS PR00111 Alpha/beta hydrolase fold signature 222 236 3.2E-22 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_36905 e93fc79ddf4cb6c035d3ad145a8f41a9 294 PRINTS PR00111 Alpha/beta hydrolase fold signature 52 67 3.2E-22 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_36905 e93fc79ddf4cb6c035d3ad145a8f41a9 294 PRINTS PR00111 Alpha/beta hydrolase fold signature 97 110 3.2E-22 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_36905 e93fc79ddf4cb6c035d3ad145a8f41a9 294 PRINTS PR00412 Epoxide hydrolase signature 52 67 5.6E-9 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_36905 e93fc79ddf4cb6c035d3ad145a8f41a9 294 PRINTS PR00412 Epoxide hydrolase signature 111 124 5.6E-9 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_36905 e93fc79ddf4cb6c035d3ad145a8f41a9 294 PRINTS PR00412 Epoxide hydrolase signature 253 275 5.6E-9 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_36905 e93fc79ddf4cb6c035d3ad145a8f41a9 294 SUPERFAMILY SSF53474 6 277 2.3E-64 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_36905 e93fc79ddf4cb6c035d3ad145a8f41a9 294 Pfam PF00561 alpha/beta hydrolase fold 25 264 4.1E-29 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_36905 e93fc79ddf4cb6c035d3ad145a8f41a9 294 Gene3D G3DSA:3.40.50.1820 4 284 6.4E-77 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_30050 25f51c9f3ac3aaa3746215df99860075 146 SUPERFAMILY SSF54909 66 144 3.22E-13 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_30050 25f51c9f3ac3aaa3746215df99860075 146 Pfam PF13412 Winged helix-turn-helix DNA-binding 6 53 1.2E-12 T 13-10-2018 RAM_30050 25f51c9f3ac3aaa3746215df99860075 146 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 22 33 3.6E-10 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_30050 25f51c9f3ac3aaa3746215df99860075 146 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 6 22 3.6E-10 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_30050 25f51c9f3ac3aaa3746215df99860075 146 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 33 52 3.6E-10 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_30050 25f51c9f3ac3aaa3746215df99860075 146 Pfam PF01037 Lrp/AsnC ligand binding domain 82 142 1.5E-12 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RAM_30050 25f51c9f3ac3aaa3746215df99860075 146 SMART SM00344 6 113 2.9E-30 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RAM_30050 25f51c9f3ac3aaa3746215df99860075 146 SUPERFAMILY SSF46785 5 66 1.57E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_30050 25f51c9f3ac3aaa3746215df99860075 146 Gene3D G3DSA:3.30.70.920 60 146 7.9E-18 T 13-10-2018 RAM_30050 25f51c9f3ac3aaa3746215df99860075 146 Gene3D G3DSA:1.10.10.10 1 59 7.2E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_05570 ff21e7239a49200c1594613d2311b66a 360 TIGRFAM TIGR00383 corA: magnesium and cobalt transport protein CorA 54 360 3.5E-65 T 13-10-2018 IPR004488 Magnesium/cobalt transport protein CorA GO:0006824|GO:0015087|GO:0015095|GO:0015693|GO:0016020 RAM_05570 ff21e7239a49200c1594613d2311b66a 360 Gene3D G3DSA:1.20.58.340 283 360 3.0E-26 T 13-10-2018 RAM_05570 ff21e7239a49200c1594613d2311b66a 360 Pfam PF01544 CorA-like Mg2+ transporter protein 62 356 5.5E-67 T 13-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 RAM_05570 ff21e7239a49200c1594613d2311b66a 360 SUPERFAMILY SSF144083 295 357 2.35E-20 T 13-10-2018 RAM_05570 ff21e7239a49200c1594613d2311b66a 360 Gene3D G3DSA:3.30.460.20 43 171 4.5E-29 T 13-10-2018 RAM_05570 ff21e7239a49200c1594613d2311b66a 360 SUPERFAMILY SSF143865 30 293 7.72E-70 T 13-10-2018 RAM_05570 ff21e7239a49200c1594613d2311b66a 360 Gene3D G3DSA:1.20.58.340 172 282 1.8E-32 T 13-10-2018 RAM_24210 4bb6fc15ccd1fe32507cfd75dcb45af2 368 TIGRFAM TIGR01686 FkbH: FkbH domain 5 313 4.4E-92 T 13-10-2018 IPR010037 FkbH domain RAM_24210 4bb6fc15ccd1fe32507cfd75dcb45af2 368 TIGRFAM TIGR01681 HAD-SF-IIIC: HAD phosphatase, family IIIC 7 116 1.1E-13 T 13-10-2018 IPR010033 HAD-superfamily phosphatase, subfamily IIIC RAM_24210 4bb6fc15ccd1fe32507cfd75dcb45af2 368 SUPERFAMILY SSF56784 5 109 1.71E-11 T 13-10-2018 IPR036412 HAD-like superfamily RAM_24210 4bb6fc15ccd1fe32507cfd75dcb45af2 368 SUPERFAMILY SSF55729 182 315 7.22E-8 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_24210 4bb6fc15ccd1fe32507cfd75dcb45af2 368 Gene3D G3DSA:3.40.50.1000 5 151 8.9E-33 T 13-10-2018 IPR023214 HAD superfamily RAM_24210 4bb6fc15ccd1fe32507cfd75dcb45af2 368 Gene3D G3DSA:3.40.630.30 179 315 1.1E-5 T 13-10-2018 RAM_16050 e108b652e02458ae0c66f0988a585a49 398 Gene3D G3DSA:1.20.1250.20 194 381 5.1E-18 T 13-10-2018 RAM_16050 e108b652e02458ae0c66f0988a585a49 398 Gene3D G3DSA:1.20.1250.20 3 187 2.3E-28 T 13-10-2018 RAM_16050 e108b652e02458ae0c66f0988a585a49 398 Pfam PF07690 Major Facilitator Superfamily 8 311 2.8E-39 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_16050 e108b652e02458ae0c66f0988a585a49 398 SUPERFAMILY SSF103473 4 375 7.19E-58 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_09805 7517b112ca67fa09b64b47bb323672a0 158 Pfam PF13380 CoA binding domain 18 133 2.0E-33 T 13-10-2018 IPR003781 CoA-binding GO:0048037 RAM_09805 7517b112ca67fa09b64b47bb323672a0 158 SUPERFAMILY SSF51735 9 135 2.59E-34 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_09805 7517b112ca67fa09b64b47bb323672a0 158 SMART SM00881 13 107 8.0E-15 T 13-10-2018 IPR003781 CoA-binding GO:0048037 RAM_09805 7517b112ca67fa09b64b47bb323672a0 158 Gene3D G3DSA:3.40.50.720 5 142 4.6E-35 T 13-10-2018 RAM_10365 77077f742d5583ecc900cc4e47be3af8 130 Gene3D G3DSA:3.30.720.110 73 129 6.8E-16 T 13-10-2018 RAM_10365 77077f742d5583ecc900cc4e47be3af8 130 Gene3D G3DSA:3.30.720.120 5 69 7.0E-12 T 13-10-2018 RAM_10365 77077f742d5583ecc900cc4e47be3af8 130 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 10 122 5.9E-10 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RAM_10365 77077f742d5583ecc900cc4e47be3af8 130 SUPERFAMILY SSF54593 7 125 2.55E-23 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_19335 4a165e53b8060fbd730cc8dcd7377790 61 SUPERFAMILY SSF159127 10 59 1.31E-8 T 13-10-2018 IPR037254 HupF/HypC superfamily RAM_19335 4a165e53b8060fbd730cc8dcd7377790 61 Gene3D G3DSA:2.40.50.970 8 59 6.0E-10 T 13-10-2018 IPR037254 HupF/HypC superfamily RAM_19335 4a165e53b8060fbd730cc8dcd7377790 61 Pfam PF01455 HupF/HypC family 11 59 1.1E-10 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC RAM_14560 cfe2d19f90f8df7aa463f5ae11860650 284 Pfam PF00296 Luciferase-like monooxygenase 13 242 4.2E-55 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_14560 cfe2d19f90f8df7aa463f5ae11860650 284 SUPERFAMILY SSF51679 8 283 2.65E-62 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_14560 cfe2d19f90f8df7aa463f5ae11860650 284 Gene3D G3DSA:3.20.20.30 2 282 6.9E-64 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_35170 98f896fd6a4b034db1b92675bf2b4ac8 441 SUPERFAMILY SSF51905 35 259 5.51E-21 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_35170 98f896fd6a4b034db1b92675bf2b4ac8 441 Gene3D G3DSA:3.50.50.60 23 97 6.2E-9 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_35170 98f896fd6a4b034db1b92675bf2b4ac8 441 Gene3D G3DSA:3.50.50.60 122 356 7.1E-13 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_35170 98f896fd6a4b034db1b92675bf2b4ac8 441 Pfam PF13454 FAD-NAD(P)-binding 41 194 1.7E-6 T 13-10-2018 IPR038732 FAD-dependent urate hydroxylase HpyO, FAD/NAD(P)-binding domain RAM_35170 98f896fd6a4b034db1b92675bf2b4ac8 441 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 39 61 1.2E-6 T 13-10-2018 RAM_35170 98f896fd6a4b034db1b92675bf2b4ac8 441 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 226 251 1.2E-6 T 13-10-2018 RAM_35170 98f896fd6a4b034db1b92675bf2b4ac8 441 SUPERFAMILY SSF51905 228 407 3.37E-8 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_25380 a526cd51fb911b66c855ff9360e245e9 203 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 64 2.2E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_25380 a526cd51fb911b66c855ff9360e245e9 203 SUPERFAMILY SSF46689 9 87 7.18E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_25380 a526cd51fb911b66c855ff9360e245e9 203 Gene3D G3DSA:1.10.357.10 6 202 4.0E-29 T 13-10-2018 RAM_25380 a526cd51fb911b66c855ff9360e245e9 203 SUPERFAMILY SSF48498 90 199 4.82E-8 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_42290 420572b1e6c9f65790d10b59bf0dd8c0 490 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 6 462 1.2E-167 T 13-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 RAM_42290 420572b1e6c9f65790d10b59bf0dd8c0 490 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 4 461 39.519 T 13-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 RAM_42290 420572b1e6c9f65790d10b59bf0dd8c0 490 SUPERFAMILY SSF51161 254 450 2.92E-39 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily RAM_42290 420572b1e6c9f65790d10b59bf0dd8c0 490 Pfam PF12804 MobA-like NTP transferase domain 8 150 7.2E-21 T 13-10-2018 IPR025877 MobA-like NTP transferase RAM_42290 420572b1e6c9f65790d10b59bf0dd8c0 490 Gene3D G3DSA:3.90.550.10 3 261 7.9E-73 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_42290 420572b1e6c9f65790d10b59bf0dd8c0 490 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 404 437 7.2E-4 T 13-10-2018 IPR001451 Hexapeptide repeat RAM_42290 420572b1e6c9f65790d10b59bf0dd8c0 490 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 278 310 0.0012 T 13-10-2018 IPR001451 Hexapeptide repeat RAM_42290 420572b1e6c9f65790d10b59bf0dd8c0 490 SUPERFAMILY SSF53448 7 262 7.58E-60 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_42290 420572b1e6c9f65790d10b59bf0dd8c0 490 Gene3D G3DSA:2.160.10.10 262 449 2.6E-50 T 13-10-2018 RAM_17710 8cbe7bedc4891a38c6570d07540e7dda 317 Gene3D G3DSA:3.40.1190.20 2 307 9.4E-63 T 13-10-2018 IPR029056 Ribokinase-like RAM_17710 8cbe7bedc4891a38c6570d07540e7dda 317 SUPERFAMILY SSF53613 4 291 1.31E-57 T 13-10-2018 IPR029056 Ribokinase-like RAM_17710 8cbe7bedc4891a38c6570d07540e7dda 317 Pfam PF00294 pfkB family carbohydrate kinase 19 290 1.7E-40 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB RAM_07925 a0d91e4ab45488207ec2b72154307367 197 Gene3D G3DSA:1.10.10.60 2 66 7.8E-19 T 13-10-2018 RAM_07925 a0d91e4ab45488207ec2b72154307367 197 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 1.4E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_07925 a0d91e4ab45488207ec2b72154307367 197 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 1.4E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_07925 a0d91e4ab45488207ec2b72154307367 197 Gene3D G3DSA:1.10.357.10 67 196 3.3E-38 T 13-10-2018 RAM_07925 a0d91e4ab45488207ec2b72154307367 197 SUPERFAMILY SSF46689 4 74 2.59E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_07925 a0d91e4ab45488207ec2b72154307367 197 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 60 6.3E-16 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_07925 a0d91e4ab45488207ec2b72154307367 197 SUPERFAMILY SSF48498 84 195 1.16E-17 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_04450 fe3c6834a5a4d14a42bc1c3ea50ca65b 310 Gene3D G3DSA:1.10.3720.10 68 304 3.7E-60 T 13-10-2018 IPR035906 MetI-like superfamily RAM_04450 fe3c6834a5a4d14a42bc1c3ea50ca65b 310 SUPERFAMILY SSF161098 72 292 7.59E-54 T 13-10-2018 IPR035906 MetI-like superfamily RAM_04450 fe3c6834a5a4d14a42bc1c3ea50ca65b 310 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 104 299 3.1E-12 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_34835 e1b51a971139fdad3ff6a07a6416fb09 391 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 63 223 5.8E-28 T 13-10-2018 RAM_34835 e1b51a971139fdad3ff6a07a6416fb09 391 ProSitePatterns PS01279 Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature. 169 184 - T 13-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 RAM_34835 e1b51a971139fdad3ff6a07a6416fb09 391 Gene3D G3DSA:3.40.50.150 11 248 1.2E-53 T 13-10-2018 RAM_34835 e1b51a971139fdad3ff6a07a6416fb09 391 SUPERFAMILY SSF53335 15 211 4.87E-27 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_25695 b30857dd170b6e28eb2a05b417af5244 260 SUPERFAMILY SSF46785 25 86 1.79E-5 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_25695 b30857dd170b6e28eb2a05b417af5244 260 Gene3D G3DSA:1.10.10.10 1 77 4.8E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_25695 b30857dd170b6e28eb2a05b417af5244 260 PIRSF PIRSF020623 1 260 1.7E-67 T 13-10-2018 IPR011965 Phenylacetic acid degradation operon negative regulatory protein PaaX GO:0006351 RAM_25695 b30857dd170b6e28eb2a05b417af5244 260 Gene3D G3DSA:3.30.70.2650 80 154 2.0E-6 T 13-10-2018 RAM_25695 b30857dd170b6e28eb2a05b417af5244 260 Pfam PF07848 PaaX-like protein 1 61 8.7E-13 T 13-10-2018 IPR012906 PaaX-like, N-terminal RAM_25695 b30857dd170b6e28eb2a05b417af5244 260 Pfam PF08223 PaaX-like protein C-terminal domain 162 251 1.4E-22 T 13-10-2018 IPR013225 PaaX-like, C-terminal RAM_09610 9a3894b031bb5bc549b1d7988ecba20d 681 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 79 595 3.0E-76 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RAM_09610 9a3894b031bb5bc549b1d7988ecba20d 681 Pfam PF00122 E1-E2 ATPase 111 287 4.3E-34 T 13-10-2018 RAM_09610 9a3894b031bb5bc549b1d7988ecba20d 681 SUPERFAMILY SSF81653 113 211 5.1E-20 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 RAM_09610 9a3894b031bb5bc549b1d7988ecba20d 681 SUPERFAMILY SSF56784 306 562 3.5E-39 T 13-10-2018 IPR036412 HAD-like superfamily RAM_09610 9a3894b031bb5bc549b1d7988ecba20d 681 Pfam PF00702 haloacid dehalogenase-like hydrolase 306 528 1.7E-33 T 13-10-2018 RAM_09610 9a3894b031bb5bc549b1d7988ecba20d 681 TIGRFAM TIGR01497 kdpB: K+-transporting ATPase, B subunit 28 674 0.0 T 13-10-2018 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 RAM_09610 9a3894b031bb5bc549b1d7988ecba20d 681 Gene3D G3DSA:3.40.1110.10 323 444 2.7E-45 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 RAM_09610 9a3894b031bb5bc549b1d7988ecba20d 681 Hamap MF_00285 Potassium-transporting ATPase ATP-binding subunit [kdpB]. 23 678 39.931 T 13-10-2018 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 RAM_09610 9a3894b031bb5bc549b1d7988ecba20d 681 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 311 317 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 RAM_09610 9a3894b031bb5bc549b1d7988ecba20d 681 SUPERFAMILY SSF81665 44 303 1.83E-12 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 RAM_09610 9a3894b031bb5bc549b1d7988ecba20d 681 Gene3D G3DSA:2.70.150.20 109 216 1.0E-25 T 13-10-2018 RAM_09610 9a3894b031bb5bc549b1d7988ecba20d 681 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 537 549 3.4E-26 T 13-10-2018 RAM_09610 9a3894b031bb5bc549b1d7988ecba20d 681 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 514 533 3.4E-26 T 13-10-2018 RAM_09610 9a3894b031bb5bc549b1d7988ecba20d 681 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 158 172 3.4E-26 T 13-10-2018 RAM_09610 9a3894b031bb5bc549b1d7988ecba20d 681 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 309 323 3.4E-26 T 13-10-2018 RAM_09610 9a3894b031bb5bc549b1d7988ecba20d 681 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 439 450 3.4E-26 T 13-10-2018 RAM_09610 9a3894b031bb5bc549b1d7988ecba20d 681 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 461 471 3.4E-26 T 13-10-2018 RAM_44775 7833c0adea7f4c1bf8b3eeb9545f5973 121 SUPERFAMILY SSF47413 33 106 1.83E-18 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_44775 7833c0adea7f4c1bf8b3eeb9545f5973 121 Pfam PF13744 Helix-turn-helix domain 40 98 4.2E-13 T 13-10-2018 IPR039554 HigA2-like, helix-turn-helix domain RAM_44775 7833c0adea7f4c1bf8b3eeb9545f5973 121 SMART SM00530 43 99 1.7E-9 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_44775 7833c0adea7f4c1bf8b3eeb9545f5973 121 Gene3D G3DSA:1.10.260.40 22 101 8.6E-19 T 13-10-2018 RAM_46335 5e2d5b19b7f91569684304754daf538e 356 Pfam PF00586 AIR synthase related protein, N-terminal domain 62 165 5.7E-14 T 13-10-2018 IPR016188 PurM-like, N-terminal domain RAM_46335 5e2d5b19b7f91569684304754daf538e 356 Gene3D G3DSA:3.90.650.10 172 349 5.8E-56 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily RAM_46335 5e2d5b19b7f91569684304754daf538e 356 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 8 337 2.0E-132 T 13-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RAM_46335 5e2d5b19b7f91569684304754daf538e 356 Pfam PF02769 AIR synthase related protein, C-terminal domain 177 342 1.7E-29 T 13-10-2018 IPR010918 PurM-like, C-terminal domain RAM_46335 5e2d5b19b7f91569684304754daf538e 356 SUPERFAMILY SSF55326 7 170 6.98E-44 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily RAM_46335 5e2d5b19b7f91569684304754daf538e 356 SUPERFAMILY SSF56042 173 341 2.09E-50 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily RAM_46335 5e2d5b19b7f91569684304754daf538e 356 Gene3D G3DSA:3.30.1330.10 5 171 8.1E-59 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily RAM_46335 5e2d5b19b7f91569684304754daf538e 356 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 7 349 41.193 T 13-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RAM_14195 fa01dc3e98e4fc42c2b8c57182904dc8 261 Pfam PF00296 Luciferase-like monooxygenase 118 240 6.1E-5 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_14195 fa01dc3e98e4fc42c2b8c57182904dc8 261 SUPERFAMILY SSF51679 2 256 1.38E-24 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_14195 fa01dc3e98e4fc42c2b8c57182904dc8 261 Gene3D G3DSA:3.20.20.30 104 252 3.6E-16 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_14195 fa01dc3e98e4fc42c2b8c57182904dc8 261 TIGRFAM TIGR03620 F420_MSMEG_4141: probable F420-dependent oxidoreductase, MSMEG_4141 family 14 258 4.4E-80 T 13-10-2018 IPR019922 Luciferase-like, F420-dependent oxidoreductase, MSMEG4141, predicted RAM_31075 7445917edb427d2871af609d37711975 252 SUPERFAMILY SSF55781 57 245 5.36E-50 T 13-10-2018 RAM_31075 7445917edb427d2871af609d37711975 252 SUPERFAMILY SSF46785 3 73 3.86E-15 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_31075 7445917edb427d2871af609d37711975 252 Gene3D G3DSA:1.10.10.10 1 73 3.0E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_31075 7445917edb427d2871af609d37711975 252 Pfam PF01614 Bacterial transcriptional regulator 117 240 1.0E-31 T 13-10-2018 IPR014757 Transcription regulator IclR, C-terminal RAM_31075 7445917edb427d2871af609d37711975 252 Gene3D G3DSA:3.30.450.40 74 250 1.1E-56 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_31075 7445917edb427d2871af609d37711975 252 SMART SM00346 2 89 3.5E-20 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RAM_31075 7445917edb427d2871af609d37711975 252 Pfam PF09339 IclR helix-turn-helix domain 4 53 3.9E-12 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RAM_37985 0bded5464ec1d69083708d40bf7beb4d 118 PIRSF PIRSF010636 26 118 1.4E-20 T 13-10-2018 IPR024189 ANTAR transcription anti-termination regulator RAM_37985 0bded5464ec1d69083708d40bf7beb4d 118 SUPERFAMILY SSF52172 32 86 2.34E-6 T 13-10-2018 IPR011006 CheY-like superfamily RAM_37985 0bded5464ec1d69083708d40bf7beb4d 118 Pfam PF03861 ANTAR domain 33 86 2.8E-19 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 RAM_37985 0bded5464ec1d69083708d40bf7beb4d 118 Gene3D G3DSA:1.10.10.10 33 92 6.0E-9 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_37985 0bded5464ec1d69083708d40bf7beb4d 118 SMART SM01012 31 86 1.2E-19 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 RAM_11240 dcefe9dd61387553c7436ef62956dd05 465 Pfam PF05991 YacP-like NYN domain 345 463 1.8E-20 T 13-10-2018 IPR010298 Protein of unknown function DUF901 RAM_19065 28b18720ad34b293787d7a055d3cafb8 320 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 230 296 3.3E-13 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RAM_19065 28b18720ad34b293787d7a055d3cafb8 320 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_19065 28b18720ad34b293787d7a055d3cafb8 320 SMART SM00382 36 228 1.5E-18 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_19065 28b18720ad34b293787d7a055d3cafb8 320 Pfam PF00005 ABC transporter 28 178 4.3E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_19065 28b18720ad34b293787d7a055d3cafb8 320 SUPERFAMILY SSF52540 6 249 1.81E-64 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_19065 28b18720ad34b293787d7a055d3cafb8 320 Gene3D G3DSA:3.40.50.300 3 318 1.5E-86 T 13-10-2018 RAM_19065 28b18720ad34b293787d7a055d3cafb8 320 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 228 315 2.8E-16 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RAM_28120 1e017c8ae7d8b1792dddb8eda8aeb103 210 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 6 192 1.0E-34 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 RAM_28120 1e017c8ae7d8b1792dddb8eda8aeb103 210 SMART SM00855 4 161 1.8E-9 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 RAM_28120 1e017c8ae7d8b1792dddb8eda8aeb103 210 SUPERFAMILY SSF53254 4 209 4.71E-38 T 13-10-2018 IPR029033 Histidine phosphatase superfamily RAM_28120 1e017c8ae7d8b1792dddb8eda8aeb103 210 Gene3D G3DSA:3.40.50.1240 3 210 3.3E-35 T 13-10-2018 IPR029033 Histidine phosphatase superfamily RAM_28120 1e017c8ae7d8b1792dddb8eda8aeb103 210 PIRSF PIRSF000709 1 202 4.5E-5 T 13-10-2018 RAM_12305 be98726fcb3e64d39b455a0778a7a7de 893 Gene3D G3DSA:3.30.1490.20 686 756 2.0E-60 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 RAM_12305 be98726fcb3e64d39b455a0778a7a7de 893 SMART SM00881 200 295 2.0E-35 T 13-10-2018 IPR003781 CoA-binding GO:0048037 RAM_12305 be98726fcb3e64d39b455a0778a7a7de 893 Pfam PF13549 ATP-grasp domain 662 872 7.3E-56 T 13-10-2018 RAM_12305 be98726fcb3e64d39b455a0778a7a7de 893 Gene3D G3DSA:3.40.50.720 199 324 1.0E-42 T 13-10-2018 RAM_12305 be98726fcb3e64d39b455a0778a7a7de 893 SUPERFAMILY SSF51735 195 332 1.39E-35 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_12305 be98726fcb3e64d39b455a0778a7a7de 893 SUPERFAMILY SSF52210 327 485 3.79E-36 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RAM_12305 be98726fcb3e64d39b455a0778a7a7de 893 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 348 481 1.4E-44 T 13-10-2018 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain RAM_12305 be98726fcb3e64d39b455a0778a7a7de 893 Gene3D G3DSA:3.30.470.20 668 869 2.0E-60 T 13-10-2018 RAM_12305 be98726fcb3e64d39b455a0778a7a7de 893 SUPERFAMILY SSF55729 22 166 7.38E-26 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_12305 be98726fcb3e64d39b455a0778a7a7de 893 Gene3D G3DSA:3.40.630.30 15 198 2.6E-51 T 13-10-2018 RAM_12305 be98726fcb3e64d39b455a0778a7a7de 893 Gene3D G3DSA:3.40.50.261 518 639 1.1E-18 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RAM_12305 be98726fcb3e64d39b455a0778a7a7de 893 SUPERFAMILY SSF52210 488 633 8.77E-23 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RAM_12305 be98726fcb3e64d39b455a0778a7a7de 893 SUPERFAMILY SSF56059 671 872 2.36E-24 T 13-10-2018 RAM_12305 be98726fcb3e64d39b455a0778a7a7de 893 Pfam PF13380 CoA binding domain 205 329 1.6E-20 T 13-10-2018 IPR003781 CoA-binding GO:0048037 RAM_12305 be98726fcb3e64d39b455a0778a7a7de 893 Pfam PF00583 Acetyltransferase (GNAT) family 55 158 7.8E-12 T 13-10-2018 IPR000182 GNAT domain RAM_12305 be98726fcb3e64d39b455a0778a7a7de 893 Gene3D G3DSA:3.40.50.261 326 485 1.4E-51 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RAM_05925 69d1ed95e4d3421475e08ddc337ab160 206 Pfam PF04299 Putative FMN-binding domain 5 163 1.1E-25 T 13-10-2018 IPR007396 Transcriptional regulator PAI 2-type RAM_05925 69d1ed95e4d3421475e08ddc337ab160 206 SUPERFAMILY SSF50475 10 183 1.5E-30 T 13-10-2018 RAM_05925 69d1ed95e4d3421475e08ddc337ab160 206 Gene3D G3DSA:2.30.110.10 5 205 2.6E-30 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_13435 7c97e2ce032fa926844a53498a7e7f20 356 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 22 355 5.0E-128 T 13-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 RAM_13435 7c97e2ce032fa926844a53498a7e7f20 356 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 37 46 - T 13-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 RAM_13435 7c97e2ce032fa926844a53498a7e7f20 356 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 21 356 45.43 T 13-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 RAM_13435 7c97e2ce032fa926844a53498a7e7f20 356 Gene3D G3DSA:3.20.20.210 10 356 3.2E-143 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 RAM_13435 7c97e2ce032fa926844a53498a7e7f20 356 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 24 355 5.9E-122 T 13-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 RAM_13435 7c97e2ce032fa926844a53498a7e7f20 356 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 154 170 - T 13-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 RAM_13435 7c97e2ce032fa926844a53498a7e7f20 356 SUPERFAMILY SSF51726 21 356 1.15E-107 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 RAM_43715 220415ab0900481d7a7b9e695637b11f 83 Pfam PF02597 ThiS family 5 83 1.6E-12 T 13-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 RAM_43715 220415ab0900481d7a7b9e695637b11f 83 Gene3D G3DSA:3.10.20.30 2 83 5.0E-18 T 13-10-2018 IPR012675 Beta-grasp domain superfamily RAM_43715 220415ab0900481d7a7b9e695637b11f 83 SUPERFAMILY SSF54285 2 81 5.05E-14 T 13-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp RAM_29575 17b1065abf1d385f27224b2d53691f24 1063 PIRSF PIRSF010631 1 1063 2.0E-274 T 13-10-2018 IPR016007 Alpha-L-rhamnosidase RAM_29575 17b1065abf1d385f27224b2d53691f24 1063 Gene3D G3DSA:1.50.10.10 304 1063 2.6E-279 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 RAM_29575 17b1065abf1d385f27224b2d53691f24 1063 Pfam PF05592 Bacterial alpha-L-rhamnosidase concanavalin-like domain 511 607 9.6E-29 T 13-10-2018 IPR008902 Alpha-L-rhamnosidase, concanavalin-like domain RAM_29575 17b1065abf1d385f27224b2d53691f24 1063 Pfam PF17389 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain 614 954 2.5E-110 T 13-10-2018 IPR035396 Alpha-L-rhamnosidase, six-hairpin glycosidase domain RAM_29575 17b1065abf1d385f27224b2d53691f24 1063 SUPERFAMILY SSF48208 611 1019 2.98E-41 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_29575 17b1065abf1d385f27224b2d53691f24 1063 Gene3D G3DSA:2.60.40.10 15 121 3.6E-32 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_29575 17b1065abf1d385f27224b2d53691f24 1063 Gene3D G3DSA:2.60.120.560 124 274 2.0E-10 T 13-10-2018 RAM_29575 17b1065abf1d385f27224b2d53691f24 1063 Pfam PF17390 Bacterial alpha-L-rhamnosidase C-terminal domain 956 1024 6.4E-16 T 13-10-2018 IPR035398 Alpha-L-rhamnosidase C-terminal domain RAM_29575 17b1065abf1d385f27224b2d53691f24 1063 Pfam PF08531 Alpha-L-rhamnosidase N-terminal domain 331 500 1.8E-53 T 13-10-2018 IPR013737 Bacterial alpha-L-rhamnosidase N-terminal RAM_19245 eb4ee6e2f487f87a71f64a877c8fffcc 173 SMART SM00530 119 173 7.2E-6 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_19245 eb4ee6e2f487f87a71f64a877c8fffcc 173 Pfam PF01381 Helix-turn-helix 120 170 3.8E-7 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_19245 eb4ee6e2f487f87a71f64a877c8fffcc 173 Gene3D G3DSA:1.10.260.40 109 170 1.4E-8 T 13-10-2018 RAM_19245 eb4ee6e2f487f87a71f64a877c8fffcc 173 SUPERFAMILY SSF47413 116 168 1.9E-8 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_38290 4eda4429299546b117633f9de8b6d159 763 Gene3D G3DSA:3.40.50.2300 7 138 1.6E-21 T 13-10-2018 RAM_38290 4eda4429299546b117633f9de8b6d159 763 Gene3D G3DSA:3.40.640.10 139 446 2.0E-87 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_38290 4eda4429299546b117633f9de8b6d159 763 PIRSF PIRSF009393 13 763 7.0E-236 T 13-10-2018 IPR011193 Ornithine/lysine/arginine decarboxylase GO:0005737|GO:0006520|GO:0016831 RAM_38290 4eda4429299546b117633f9de8b6d159 763 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 621 749 1.3E-41 T 13-10-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 RAM_38290 4eda4429299546b117633f9de8b6d159 763 SUPERFAMILY SSF55904 617 758 5.23E-29 T 13-10-2018 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily GO:0003824 RAM_38290 4eda4429299546b117633f9de8b6d159 763 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 139 596 2.5E-138 T 13-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 RAM_38290 4eda4429299546b117633f9de8b6d159 763 Gene3D G3DSA:3.90.100.10 637 762 3.2E-41 T 13-10-2018 RAM_38290 4eda4429299546b117633f9de8b6d159 763 Gene3D G3DSA:3.90.1150.10 447 636 5.0E-73 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_38290 4eda4429299546b117633f9de8b6d159 763 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 21 133 2.9E-19 T 13-10-2018 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 RAM_38290 4eda4429299546b117633f9de8b6d159 763 SUPERFAMILY SSF53383 139 612 7.96E-95 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_38290 4eda4429299546b117633f9de8b6d159 763 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 383 397 - T 13-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 RAM_08265 203542ae9a908006b81596392aecec6d 299 SUPERFAMILY SSF51430 13 294 5.89E-62 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_08265 203542ae9a908006b81596392aecec6d 299 Gene3D G3DSA:3.20.20.100 10 298 5.2E-64 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_08265 203542ae9a908006b81596392aecec6d 299 PRINTS PR00069 Aldo-keto reductase signature 149 166 2.4E-9 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_08265 203542ae9a908006b81596392aecec6d 299 PRINTS PR00069 Aldo-keto reductase signature 52 76 2.4E-9 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_08265 203542ae9a908006b81596392aecec6d 299 PRINTS PR00069 Aldo-keto reductase signature 226 250 2.4E-9 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_08265 203542ae9a908006b81596392aecec6d 299 Pfam PF00248 Aldo/keto reductase family 18 292 7.0E-45 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain RAM_30550 ec39f5c15c38002b0fa13a78bee1d5b9 126 Gene3D G3DSA:3.10.180.10 1 115 4.4E-19 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_30550 ec39f5c15c38002b0fa13a78bee1d5b9 126 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 3 110 2.2E-4 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RAM_30550 ec39f5c15c38002b0fa13a78bee1d5b9 126 SUPERFAMILY SSF54593 3 116 6.85E-24 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_24760 519ebd6ca63f48d20e44ae6ea20f7197 279 Gene3D G3DSA:3.40.50.720 3 279 9.6E-84 T 13-10-2018 RAM_24760 519ebd6ca63f48d20e44ae6ea20f7197 279 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 3.4E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_24760 519ebd6ca63f48d20e44ae6ea20f7197 279 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 3.4E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_24760 519ebd6ca63f48d20e44ae6ea20f7197 279 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 3.4E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_24760 519ebd6ca63f48d20e44ae6ea20f7197 279 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 1.7E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_24760 519ebd6ca63f48d20e44ae6ea20f7197 279 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 1.7E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_24760 519ebd6ca63f48d20e44ae6ea20f7197 279 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.7E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_24760 519ebd6ca63f48d20e44ae6ea20f7197 279 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 1.7E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_24760 519ebd6ca63f48d20e44ae6ea20f7197 279 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 1.7E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_24760 519ebd6ca63f48d20e44ae6ea20f7197 279 SUPERFAMILY SSF51735 1 240 1.5E-65 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_24760 519ebd6ca63f48d20e44ae6ea20f7197 279 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 174 0.0056 T 13-10-2018 RAM_24760 519ebd6ca63f48d20e44ae6ea20f7197 279 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_24760 519ebd6ca63f48d20e44ae6ea20f7197 279 Pfam PF00106 short chain dehydrogenase 8 189 7.1E-51 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_26115 5b10a5a0a529cd72e8bb6a8f954624d6 421 Pfam PF13556 PucR C-terminal helix-turn-helix domain 353 408 3.7E-15 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain RAM_26115 5b10a5a0a529cd72e8bb6a8f954624d6 421 Gene3D G3DSA:1.10.10.2840 285 414 1.9E-20 T 13-10-2018 RAM_43710 8d1ba2327b4291d744cf089efaf6815b 335 Gene3D G3DSA:3.20.20.70 6 335 1.3E-89 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_43710 8d1ba2327b4291d744cf089efaf6815b 335 SUPERFAMILY SSF102114 9 286 9.16E-75 T 13-10-2018 RAM_43710 8d1ba2327b4291d744cf089efaf6815b 335 Pfam PF13353 4Fe-4S single cluster domain 25 110 1.0E-6 T 13-10-2018 RAM_43710 8d1ba2327b4291d744cf089efaf6815b 335 SMART SM00729 18 220 2.9E-7 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 RAM_43710 8d1ba2327b4291d744cf089efaf6815b 335 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 9 335 2.1E-112 T 13-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RAM_43710 8d1ba2327b4291d744cf089efaf6815b 335 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 24 35 - T 13-10-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RAM_43710 8d1ba2327b4291d744cf089efaf6815b 335 Hamap MF_01225_B GTP 3',8-cyclase [moaA]. 9 335 40.267 T 13-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RAM_43710 8d1ba2327b4291d744cf089efaf6815b 335 Pfam PF04055 Radical SAM superfamily 23 184 2.8E-29 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RAM_43710 8d1ba2327b4291d744cf089efaf6815b 335 Pfam PF06463 Molybdenum Cofactor Synthesis C 191 317 2.6E-36 T 13-10-2018 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RAM_16340 55bea1c001b304d8a5813cce61b514f8 371 Gene3D G3DSA:3.40.710.10 34 360 5.1E-100 T 13-10-2018 RAM_16340 55bea1c001b304d8a5813cce61b514f8 371 SUPERFAMILY SSF56601 38 344 1.83E-79 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_16340 55bea1c001b304d8a5813cce61b514f8 371 Pfam PF00144 Beta-lactamase 40 362 3.0E-64 T 13-10-2018 IPR001466 Beta-lactamase-related RAM_46840 6b87d164968710907d9602c13c729e1b 333 Pfam PF03171 2OG-Fe(II) oxygenase superfamily 164 283 2.3E-19 T 13-10-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 RAM_46840 6b87d164968710907d9602c13c729e1b 333 SUPERFAMILY SSF51197 20 313 3.23E-54 T 13-10-2018 RAM_46840 6b87d164968710907d9602c13c729e1b 333 Gene3D G3DSA:2.60.120.330 13 313 9.5E-49 T 13-10-2018 IPR027443 Isopenicillin N synthase-like RAM_46840 6b87d164968710907d9602c13c729e1b 333 Pfam PF14226 non-haem dioxygenase in morphine synthesis N-terminal 20 120 3.8E-12 T 13-10-2018 IPR026992 Non-haem dioxygenase N-terminal domain RAM_13340 c1cafe47cdf188e4d60b93af8eb756bb 222 SUPERFAMILY SSF52172 1 170 1.1E-34 T 13-10-2018 IPR011006 CheY-like superfamily RAM_13340 c1cafe47cdf188e4d60b93af8eb756bb 222 Gene3D G3DSA:1.10.10.10 121 219 1.2E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_13340 c1cafe47cdf188e4d60b93af8eb756bb 222 SMART SM00448 1 109 1.6E-32 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_13340 c1cafe47cdf188e4d60b93af8eb756bb 222 Pfam PF00072 Response regulator receiver domain 1 110 4.6E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_13340 c1cafe47cdf188e4d60b93af8eb756bb 222 Gene3D G3DSA:3.40.50.2300 1 118 4.4E-33 T 13-10-2018 RAM_13340 c1cafe47cdf188e4d60b93af8eb756bb 222 Pfam PF00486 Transcriptional regulatory protein, C terminal 144 213 5.3E-22 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_13340 c1cafe47cdf188e4d60b93af8eb756bb 222 SMART SM00862 142 214 1.4E-20 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_11610 2ce49adcde7fa62ef49a88dd1162326c 166 Gene3D G3DSA:1.10.1740.10 1 79 2.5E-9 T 13-10-2018 RAM_11610 2ce49adcde7fa62ef49a88dd1162326c 166 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 3 153 3.4E-19 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_11610 2ce49adcde7fa62ef49a88dd1162326c 166 Gene3D G3DSA:1.10.10.10 80 155 1.7E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_11610 2ce49adcde7fa62ef49a88dd1162326c 166 SUPERFAMILY SSF88659 93 152 1.85E-14 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_11610 2ce49adcde7fa62ef49a88dd1162326c 166 Pfam PF04542 Sigma-70 region 2 9 70 2.5E-8 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_11610 2ce49adcde7fa62ef49a88dd1162326c 166 Pfam PF08281 Sigma-70, region 4 98 150 1.6E-13 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_11610 2ce49adcde7fa62ef49a88dd1162326c 166 SUPERFAMILY SSF88946 3 89 9.42E-15 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_04685 1a7514d530636cc6bdf033afd048e642 140 SUPERFAMILY SSF110857 5 109 9.55E-12 T 13-10-2018 IPR036568 Gamma-glutamyl cyclotransferase-like superfamily RAM_04685 1a7514d530636cc6bdf033afd048e642 140 Gene3D G3DSA:3.10.490.10 1 139 1.7E-35 T 13-10-2018 RAM_04685 1a7514d530636cc6bdf033afd048e642 140 Pfam PF13772 AIG2-like family 49 130 1.7E-22 T 13-10-2018 RAM_33040 397928623003ffc73aec0c290f6a4e70 280 Pfam PF01828 Peptidase A4 family 65 275 2.6E-31 T 13-10-2018 IPR000250 Peptidase G1 GO:0004190|GO:0006508 RAM_33040 397928623003ffc73aec0c290f6a4e70 280 Gene3D G3DSA:2.60.120.700 61 271 4.6E-25 T 13-10-2018 IPR038656 Peptidase G1 superfamily RAM_33040 397928623003ffc73aec0c290f6a4e70 280 SUPERFAMILY SSF49899 62 261 5.93E-26 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily RAM_04785 fd250fc85c85b6085d8ec6f8cf7246f7 617 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 410 612 1.3E-40 T 13-10-2018 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 RAM_04785 fd250fc85c85b6085d8ec6f8cf7246f7 617 SUPERFAMILY SSF51445 35 408 2.11E-113 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_04785 fd250fc85c85b6085d8ec6f8cf7246f7 617 SUPERFAMILY SSF52279 410 612 1.96E-49 T 13-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 RAM_04785 fd250fc85c85b6085d8ec6f8cf7246f7 617 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 56 371 1.5E-73 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_04785 fd250fc85c85b6085d8ec6f8cf7246f7 617 Gene3D G3DSA:3.20.20.300 30 393 4.9E-136 T 13-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 RAM_04785 fd250fc85c85b6085d8ec6f8cf7246f7 617 Gene3D G3DSA:3.40.50.1700 395 615 1.1E-75 T 13-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 RAM_04785 fd250fc85c85b6085d8ec6f8cf7246f7 617 PRINTS PR00133 Glycosyl hydrolase family 3 signature 292 310 2.2E-21 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_04785 fd250fc85c85b6085d8ec6f8cf7246f7 617 PRINTS PR00133 Glycosyl hydrolase family 3 signature 140 159 2.2E-21 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_04785 fd250fc85c85b6085d8ec6f8cf7246f7 617 PRINTS PR00133 Glycosyl hydrolase family 3 signature 222 238 2.2E-21 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_04785 fd250fc85c85b6085d8ec6f8cf7246f7 617 PRINTS PR00133 Glycosyl hydrolase family 3 signature 116 132 2.2E-21 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_04785 fd250fc85c85b6085d8ec6f8cf7246f7 617 PRINTS PR00133 Glycosyl hydrolase family 3 signature 186 202 2.2E-21 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_45210 d42cbcd14108c8a75999cc412bd23d14 294 Pfam PF01418 Helix-turn-helix domain, rpiR family 2 71 1.1E-16 T 13-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 RAM_45210 d42cbcd14108c8a75999cc412bd23d14 294 Pfam PF01380 SIS domain 127 253 1.4E-24 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 RAM_45210 d42cbcd14108c8a75999cc412bd23d14 294 SUPERFAMILY SSF53697 95 278 4.61E-44 T 13-10-2018 RAM_45210 d42cbcd14108c8a75999cc412bd23d14 294 SUPERFAMILY SSF46689 2 70 7.7E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_45210 d42cbcd14108c8a75999cc412bd23d14 294 Gene3D G3DSA:1.10.10.10 1 76 5.2E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_45210 d42cbcd14108c8a75999cc412bd23d14 294 Gene3D G3DSA:3.40.50.10490 93 276 3.7E-47 T 13-10-2018 RAM_31070 b76cbd9e411b0ac5750dec7d9fd75888 127 Gene3D G3DSA:3.30.1330.40 2 125 2.8E-43 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 RAM_31070 b76cbd9e411b0ac5750dec7d9fd75888 127 SUPERFAMILY SSF55298 1 126 8.01E-40 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 RAM_31070 b76cbd9e411b0ac5750dec7d9fd75888 127 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 4 125 3.3E-33 T 13-10-2018 IPR006056 RidA family Reactome: R-HSA-8849175 RAM_31070 b76cbd9e411b0ac5750dec7d9fd75888 127 Pfam PF01042 Endoribonuclease L-PSP 8 124 2.6E-33 T 13-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 RAM_30995 8222ed2290b1016897e13b4fb564fc55 318 Gene3D G3DSA:1.10.10.10 6 65 2.4E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_30995 8222ed2290b1016897e13b4fb564fc55 318 Pfam PF13280 WYL domain 143 313 1.4E-31 T 13-10-2018 IPR026881 WYL domain RAM_30995 8222ed2290b1016897e13b4fb564fc55 318 Pfam PF08279 HTH domain 7 62 4.6E-16 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 RAM_30995 8222ed2290b1016897e13b4fb564fc55 318 ProSitePatterns PS00894 DeoR-type HTH domain signature. 7 41 - T 13-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 RAM_30995 8222ed2290b1016897e13b4fb564fc55 318 SUPERFAMILY SSF46785 7 64 2.89E-11 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_30995 8222ed2290b1016897e13b4fb564fc55 318 PIRSF PIRSF016838 1 317 5.3E-25 T 13-10-2018 IPR028349 Protein PafC RAM_03355 43ba890f7ee7904a4ffc73d9087fe730 1303 Pfam PF00623 RNA polymerase Rpb1, domain 2 419 560 1.7E-35 T 13-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAM_03355 43ba890f7ee7904a4ffc73d9087fe730 1303 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 4 1263 17.429 T 13-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAM_03355 43ba890f7ee7904a4ffc73d9087fe730 1303 SMART SM00663 310 589 7.3E-170 T 13-10-2018 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAM_03355 43ba890f7ee7904a4ffc73d9087fe730 1303 SUPERFAMILY SSF64484 5 1254 0.0 T 13-10-2018 RAM_03355 43ba890f7ee7904a4ffc73d9087fe730 1303 Pfam PF04983 RNA polymerase Rpb1, domain 3 564 725 7.6E-25 T 13-10-2018 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAM_03355 43ba890f7ee7904a4ffc73d9087fe730 1303 Pfam PF04997 RNA polymerase Rpb1, domain 1 7 417 9.0E-82 T 13-10-2018 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAM_03355 43ba890f7ee7904a4ffc73d9087fe730 1303 Pfam PF04998 RNA polymerase Rpb1, domain 5 832 1200 1.2E-63 T 13-10-2018 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAM_03355 43ba890f7ee7904a4ffc73d9087fe730 1303 Gene3D G3DSA:1.10.132.30 722 856 3.6E-48 T 13-10-2018 IPR038120 RNA polymerase Rpb1, funnel domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAM_03355 43ba890f7ee7904a4ffc73d9087fe730 1303 Gene3D G3DSA:1.10.40.90 449 491 4.4E-24 T 13-10-2018 RAM_03355 43ba890f7ee7904a4ffc73d9087fe730 1303 Gene3D G3DSA:1.10.1790.20 1015 1200 1.2E-63 T 13-10-2018 RAM_03355 43ba890f7ee7904a4ffc73d9087fe730 1303 Pfam PF05000 RNA polymerase Rpb1, domain 4 762 817 3.5E-8 T 13-10-2018 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAM_03355 43ba890f7ee7904a4ffc73d9087fe730 1303 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 10 1253 0.0 T 13-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAM_03355 43ba890f7ee7904a4ffc73d9087fe730 1303 Gene3D G3DSA:1.10.274.100 565 721 9.3E-42 T 13-10-2018 RAM_03355 43ba890f7ee7904a4ffc73d9087fe730 1303 Gene3D G3DSA:2.40.50.100 1031 1101 1.2E-63 T 13-10-2018 RAM_03355 43ba890f7ee7904a4ffc73d9087fe730 1303 Gene3D G3DSA:1.10.150.390 1202 1264 4.3E-29 T 13-10-2018 RAM_00490 c1155795fd3f9c7284345aad26f3ea33 388 Gene3D G3DSA:3.10.580.10 262 380 2.0E-5 T 13-10-2018 RAM_00490 c1155795fd3f9c7284345aad26f3ea33 388 SMART SM00382 38 225 5.1E-18 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_00490 c1155795fd3f9c7284345aad26f3ea33 388 Pfam PF00005 ABC transporter 30 175 2.8E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_00490 c1155795fd3f9c7284345aad26f3ea33 388 SUPERFAMILY SSF52540 12 251 4.34E-74 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_00490 c1155795fd3f9c7284345aad26f3ea33 388 SUPERFAMILY SSF54631 261 377 6.39E-9 T 13-10-2018 RAM_00490 c1155795fd3f9c7284345aad26f3ea33 388 Gene3D G3DSA:3.40.50.300 11 253 1.0E-70 T 13-10-2018 RAM_00490 c1155795fd3f9c7284345aad26f3ea33 388 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_30510 a0e2215d886aca41c7e1de95705c35a4 727 Gene3D G3DSA:1.10.490.140 374 699 8.8E-122 T 13-10-2018 RAM_30510 a0e2215d886aca41c7e1de95705c35a4 727 Gene3D G3DSA:3.40.50.720 88 276 2.4E-48 T 13-10-2018 RAM_30510 a0e2215d886aca41c7e1de95705c35a4 727 TIGRFAM TIGR03604 TOMM_cyclo_SagD: thiazole/oxazole-forming peptide maturase, SagD family component 367 723 4.1E-79 T 13-10-2018 IPR027624 Thiazole/oxazole-forming peptide maturase, SagD family component RAM_30510 a0e2215d886aca41c7e1de95705c35a4 727 Pfam PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding 367 690 1.8E-101 T 13-10-2018 IPR003776 YcaO-like domain RAM_30510 a0e2215d886aca41c7e1de95705c35a4 727 Gene3D G3DSA:2.40.50.820 396 484 8.8E-122 T 13-10-2018 RAM_30510 a0e2215d886aca41c7e1de95705c35a4 727 TIGRFAM TIGR03882 cyclo_dehyd_2: bacteriocin biosynthesis cyclodehydratase domain 159 325 2.4E-45 T 13-10-2018 IPR022291 Bacteriocin biosynthesis, cyclodehydratase domain RAM_30510 a0e2215d886aca41c7e1de95705c35a4 727 SUPERFAMILY SSF69572 136 279 2.55E-8 T 13-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 RAM_30510 a0e2215d886aca41c7e1de95705c35a4 727 Gene3D G3DSA:3.30.160.660 521 644 8.8E-122 T 13-10-2018 RAM_30510 a0e2215d886aca41c7e1de95705c35a4 727 TIGRFAM TIGR00702 TIGR00702: YcaO-type kinase domain 365 689 1.7E-30 T 13-10-2018 IPR003776 YcaO-like domain RAM_30510 a0e2215d886aca41c7e1de95705c35a4 727 Gene3D G3DSA:1.10.490.140 285 351 5.2E-10 T 13-10-2018 RAM_06225 d76e0869863a04c7d83938e2b06c560f 991 SUPERFAMILY SSF81301 559 831 2.4E-69 T 13-10-2018 RAM_06225 d76e0869863a04c7d83938e2b06c560f 991 SUPERFAMILY SSF81301 70 322 4.9E-55 T 13-10-2018 RAM_06225 d76e0869863a04c7d83938e2b06c560f 991 Pfam PF08335 GlnD PII-uridylyltransferase 336 482 5.0E-34 T 13-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 RAM_06225 d76e0869863a04c7d83938e2b06c560f 991 Pfam PF08335 GlnD PII-uridylyltransferase 845 988 8.9E-17 T 13-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 RAM_06225 d76e0869863a04c7d83938e2b06c560f 991 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 587 821 4.0E-62 T 13-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 RAM_06225 d76e0869863a04c7d83938e2b06c560f 991 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 87 314 2.6E-33 T 13-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 RAM_06225 d76e0869863a04c7d83938e2b06c560f 991 Hamap MF_00802 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme [glnE]. 83 979 16.657 T 13-10-2018 IPR023057 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme GO:0008882 RAM_06225 d76e0869863a04c7d83938e2b06c560f 991 Gene3D G3DSA:3.30.460.100 95 320 3.3E-54 T 13-10-2018 RAM_06225 d76e0869863a04c7d83938e2b06c560f 991 Gene3D G3DSA:3.30.460.100 596 828 9.2E-63 T 13-10-2018 RAM_06225 d76e0869863a04c7d83938e2b06c560f 991 SUPERFAMILY SSF81593 836 989 9.42E-34 T 13-10-2018 RAM_06225 d76e0869863a04c7d83938e2b06c560f 991 SUPERFAMILY SSF81593 327 483 1.88E-36 T 13-10-2018 RAM_06225 d76e0869863a04c7d83938e2b06c560f 991 Gene3D G3DSA:1.20.120.330 327 485 7.1E-42 T 13-10-2018 RAM_06225 d76e0869863a04c7d83938e2b06c560f 991 Gene3D G3DSA:1.20.120.330 833 990 3.2E-34 T 13-10-2018 RAM_22495 331a2f76ff3a9c5c85102e7414516847 481 SUPERFAMILY SSF69864 190 437 7.19E-75 T 13-10-2018 RAM_22495 331a2f76ff3a9c5c85102e7414516847 481 SUPERFAMILY SSF52402 5 185 7.15E-32 T 13-10-2018 RAM_22495 331a2f76ff3a9c5c85102e7414516847 481 Gene3D G3DSA:1.10.287.400 377 440 4.3E-28 T 13-10-2018 IPR024073 Argininosuccinate synthetase mutimerisation domain, C-terminal tail GO:0042803 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400 RAM_22495 331a2f76ff3a9c5c85102e7414516847 481 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 17 25 - T 13-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 RAM_22495 331a2f76ff3a9c5c85102e7414516847 481 Gene3D G3DSA:3.40.50.620 14 191 5.5E-114 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAM_22495 331a2f76ff3a9c5c85102e7414516847 481 TIGRFAM TIGR00032 argG: argininosuccinate synthase 13 420 6.9E-139 T 13-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 RAM_22495 331a2f76ff3a9c5c85102e7414516847 481 Pfam PF00764 Arginosuccinate synthase 16 394 1.4E-56 T 13-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 RAM_22495 331a2f76ff3a9c5c85102e7414516847 481 Gene3D G3DSA:3.90.1260.10 74 367 5.5E-114 T 13-10-2018 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 RAM_22495 331a2f76ff3a9c5c85102e7414516847 481 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 129 140 - T 13-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 RAM_22495 331a2f76ff3a9c5c85102e7414516847 481 Hamap MF_00581 Argininosuccinate synthase [argG]. 1 472 78.827 T 13-10-2018 IPR023437 Argininosuccinate synthase, type 2 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400 RAM_18475 79756e351694f399e5fd73900cad99a9 285 Pfam PF00005 ABC transporter 25 163 2.4E-25 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_18475 79756e351694f399e5fd73900cad99a9 285 Gene3D G3DSA:3.40.50.300 1 234 3.3E-59 T 13-10-2018 RAM_18475 79756e351694f399e5fd73900cad99a9 285 SMART SM00382 31 220 8.5E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_18475 79756e351694f399e5fd73900cad99a9 285 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_18475 79756e351694f399e5fd73900cad99a9 285 SUPERFAMILY SSF52540 3 222 4.71E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_39445 350830e9732c8c1ffeaf38d51c9dc133 200 SUPERFAMILY SSF52540 17 187 2.5E-22 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_39445 350830e9732c8c1ffeaf38d51c9dc133 200 Gene3D G3DSA:3.40.50.300 10 193 1.2E-16 T 13-10-2018 RAM_39445 350830e9732c8c1ffeaf38d51c9dc133 200 Pfam PF03029 Conserved hypothetical ATP binding protein 21 188 1.7E-26 T 13-10-2018 IPR004130 GPN-loop GTPase RAM_05840 9a65a2ecc987dc92982c14fca812fd87 430 SUPERFAMILY SSF63411 238 423 1.08E-23 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RAM_05840 9a65a2ecc987dc92982c14fca812fd87 430 Gene3D G3DSA:3.30.830.10 3 223 4.1E-60 T 13-10-2018 RAM_05840 9a65a2ecc987dc92982c14fca812fd87 430 Pfam PF05193 Peptidase M16 inactive domain 172 352 2.4E-24 T 13-10-2018 IPR007863 Peptidase M16, C-terminal RAM_05840 9a65a2ecc987dc92982c14fca812fd87 430 SUPERFAMILY SSF63411 3 221 4.25E-49 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RAM_05840 9a65a2ecc987dc92982c14fca812fd87 430 Pfam PF00675 Insulinase (Peptidase family M16) 16 131 3.6E-18 T 13-10-2018 IPR011765 Peptidase M16, N-terminal RAM_05840 9a65a2ecc987dc92982c14fca812fd87 430 Gene3D G3DSA:3.30.830.10 226 423 5.0E-36 T 13-10-2018 RAM_16630 2fe00893ed29078b2bc25ba8fb104796 258 SUPERFAMILY SSF52096 10 255 4.23E-63 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_16630 2fe00893ed29078b2bc25ba8fb104796 258 Gene3D G3DSA:1.10.12.10 202 258 6.0E-23 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal RAM_16630 2fe00893ed29078b2bc25ba8fb104796 258 Gene3D G3DSA:3.90.226.10 4 201 1.6E-60 T 13-10-2018 RAM_16630 2fe00893ed29078b2bc25ba8fb104796 258 Pfam PF00378 Enoyl-CoA hydratase/isomerase 16 253 3.4E-33 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RAM_07125 eb7f93ea2454382910b78ec0c8cd6b99 220 Pfam PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading 37 217 7.8E-28 T 13-10-2018 IPR004302 Cellulose/chitin-binding protein, N-terminal RAM_07125 eb7f93ea2454382910b78ec0c8cd6b99 220 Gene3D G3DSA:2.70.50.50 37 219 3.0E-56 T 13-10-2018 RAM_07125 eb7f93ea2454382910b78ec0c8cd6b99 220 SUPERFAMILY SSF81296 37 220 3.92E-27 T 13-10-2018 IPR014756 Immunoglobulin E-set RAM_39950 bc7bb2b9233084b09304f4ccfe76d0ae 546 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 366 375 - T 13-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RAM_39950 bc7bb2b9233084b09304f4ccfe76d0ae 546 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 6 512 2.8E-241 T 13-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RAM_39950 bc7bb2b9233084b09304f4ccfe76d0ae 546 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 29 95 5.0E-14 T 13-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RAM_39950 bc7bb2b9233084b09304f4ccfe76d0ae 546 SUPERFAMILY SSF50615 14 97 7.06E-24 T 13-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RAM_39950 bc7bb2b9233084b09304f4ccfe76d0ae 546 SUPERFAMILY SSF52540 99 381 2.95E-92 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_39950 bc7bb2b9233084b09304f4ccfe76d0ae 546 Gene3D G3DSA:1.20.150.20 383 513 3.6E-48 T 13-10-2018 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RAM_39950 bc7bb2b9233084b09304f4ccfe76d0ae 546 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 382 507 8.1E-46 T 13-10-2018 IPR000793 ATP synthase, alpha subunit, C-terminal GO:0015986 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RAM_39950 bc7bb2b9233084b09304f4ccfe76d0ae 546 SUPERFAMILY SSF47917 384 511 1.49E-44 T 13-10-2018 RAM_39950 bc7bb2b9233084b09304f4ccfe76d0ae 546 Gene3D G3DSA:3.40.50.300 97 382 1.0E-114 T 13-10-2018 RAM_39950 bc7bb2b9233084b09304f4ccfe76d0ae 546 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 152 375 7.0E-66 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RAM_39950 bc7bb2b9233084b09304f4ccfe76d0ae 546 Gene3D G3DSA:2.40.30.20 4 96 2.3E-28 T 13-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RAM_39950 bc7bb2b9233084b09304f4ccfe76d0ae 546 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 4 512 48.546 T 13-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RAM_06365 fbe0bf802e995cbd79c5cc4480ad69cf 298 SUPERFAMILY SSF51556 24 296 1.66E-42 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_06365 fbe0bf802e995cbd79c5cc4480ad69cf 298 Gene3D G3DSA:3.20.20.140 21 297 1.6E-36 T 13-10-2018 RAM_06365 fbe0bf802e995cbd79c5cc4480ad69cf 298 Pfam PF04909 Amidohydrolase 24 296 4.3E-29 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RAM_34965 2a97386021dc2fe16803fd6048bf6454 269 SMART SM00849 21 215 8.4E-18 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_34965 2a97386021dc2fe16803fd6048bf6454 269 SUPERFAMILY SSF56281 2 234 2.66E-47 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_34965 2a97386021dc2fe16803fd6048bf6454 269 Gene3D G3DSA:3.60.15.10 3 236 6.2E-44 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_34965 2a97386021dc2fe16803fd6048bf6454 269 Pfam PF00753 Metallo-beta-lactamase superfamily 24 215 4.7E-15 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_41200 17524da2a666c64e2f29846125cab0fa 108 Hamap MF_01479 Transcriptional regulator WhiB [whiB]. 14 108 19.327 T 13-10-2018 IPR003482 Transcription factor WhiB RAM_41200 17524da2a666c64e2f29846125cab0fa 108 Pfam PF02467 Transcription factor WhiB 40 103 1.7E-26 T 13-10-2018 IPR034768 WhiB-like iron-sulfur binding domain RAM_10530 03551a10b729da4d51e8c3dfe1b1d79d 299 Gene3D G3DSA:3.40.50.720 89 273 2.6E-77 T 13-10-2018 RAM_10530 03551a10b729da4d51e8c3dfe1b1d79d 299 Gene3D G3DSA:3.40.50.720 30 297 2.6E-77 T 13-10-2018 RAM_10530 03551a10b729da4d51e8c3dfe1b1d79d 299 SUPERFAMILY SSF52283 26 119 3.02E-7 T 13-10-2018 RAM_10530 03551a10b729da4d51e8c3dfe1b1d79d 299 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 97 266 1.0E-42 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 RAM_10530 03551a10b729da4d51e8c3dfe1b1d79d 299 SUPERFAMILY SSF51735 91 267 1.77E-44 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_33850 b9d9f5696f5994492b98975041108c79 364 Pfam PF00079 Serpin (serine protease inhibitor) 8 364 1.2E-80 T 13-10-2018 IPR023796 Serpin domain RAM_33850 b9d9f5696f5994492b98975041108c79 364 SUPERFAMILY SSF56574 3 364 1.96E-87 T 13-10-2018 IPR036186 Serpin superfamily RAM_33850 b9d9f5696f5994492b98975041108c79 364 ProSitePatterns PS00284 Serpins signature. 337 347 - T 13-10-2018 IPR023795 Serpin, conserved site RAM_33850 b9d9f5696f5994492b98975041108c79 364 SMART SM00093 11 364 3.5E-70 T 13-10-2018 IPR023796 Serpin domain RAM_33850 b9d9f5696f5994492b98975041108c79 364 Gene3D G3DSA:2.30.39.10 163 364 2.1E-89 T 13-10-2018 RAM_33850 b9d9f5696f5994492b98975041108c79 364 Gene3D G3DSA:3.30.497.10 20 326 2.1E-89 T 13-10-2018 RAM_17860 58afc65955865ccc63d1f929cad91ff0 120 Gene3D G3DSA:1.10.10.10 1 69 4.3E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_17860 58afc65955865ccc63d1f929cad91ff0 120 SUPERFAMILY SSF46785 1 116 9.82E-28 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_17860 58afc65955865ccc63d1f929cad91ff0 120 Pfam PF03965 Penicillinase repressor 4 114 3.3E-28 T 13-10-2018 IPR005650 BlaI transcriptional regulatory family GO:0003677|GO:0045892 RAM_17860 58afc65955865ccc63d1f929cad91ff0 120 PIRSF PIRSF019455 2 120 2.4E-22 T 13-10-2018 IPR005650 BlaI transcriptional regulatory family GO:0003677|GO:0045892 RAM_08500 ce477d8d192027288e4294c361eadc0b 505 Gene3D G3DSA:3.90.1300.10 4 491 4.0E-186 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RAM_08500 ce477d8d192027288e4294c361eadc0b 505 Pfam PF01425 Amidase 25 475 3.1E-159 T 13-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RAM_08500 ce477d8d192027288e4294c361eadc0b 505 Hamap MF_00120 Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 12 487 91.39 T 13-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RAM_08500 ce477d8d192027288e4294c361eadc0b 505 PIRSF PIRSF001221 1 455 4.0E-45 T 13-10-2018 RAM_08500 ce477d8d192027288e4294c361eadc0b 505 PIRSF PIRSF001221 444 484 7.7 T 13-10-2018 RAM_08500 ce477d8d192027288e4294c361eadc0b 505 TIGRFAM TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 15 485 2.5E-189 T 13-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RAM_08500 ce477d8d192027288e4294c361eadc0b 505 ProSitePatterns PS00571 Amidases signature. 154 185 - T 13-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 RAM_08500 ce477d8d192027288e4294c361eadc0b 505 SUPERFAMILY SSF75304 2 486 3.4E-162 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RAM_22565 ecf3e9138a6f4d2c8ff0ce6682ca7575 281 Gene3D G3DSA:1.10.3720.10 5 268 8.8E-63 T 13-10-2018 IPR035906 MetI-like superfamily RAM_22565 ecf3e9138a6f4d2c8ff0ce6682ca7575 281 SUPERFAMILY SSF161098 7 281 5.76E-71 T 13-10-2018 IPR035906 MetI-like superfamily RAM_22565 ecf3e9138a6f4d2c8ff0ce6682ca7575 281 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 96 274 8.2E-21 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_15660 66f9337910499a0954325a3a4d2ec7d1 352 SUPERFAMILY SSF51430 1 312 2.23E-92 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_15660 66f9337910499a0954325a3a4d2ec7d1 352 Pfam PF00248 Aldo/keto reductase family 17 310 2.2E-64 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain RAM_15660 66f9337910499a0954325a3a4d2ec7d1 352 Gene3D G3DSA:3.20.20.100 1 317 8.5E-108 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_15660 66f9337910499a0954325a3a4d2ec7d1 352 PRINTS PR00069 Aldo-keto reductase signature 137 154 7.3E-9 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_15660 66f9337910499a0954325a3a4d2ec7d1 352 PRINTS PR00069 Aldo-keto reductase signature 106 124 7.3E-9 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_15660 66f9337910499a0954325a3a4d2ec7d1 352 PRINTS PR00069 Aldo-keto reductase signature 41 65 7.3E-9 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_25650 fbbbd514883ecef61a79b6001623e697 161 Gene3D G3DSA:1.20.120.450 3 160 5.6E-28 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_25650 fbbbd514883ecef61a79b6001623e697 161 Pfam PF04978 Protein of unknown function (DUF664) 16 159 3.9E-39 T 13-10-2018 IPR007061 Protein of unknown function DUF664 RAM_25650 fbbbd514883ecef61a79b6001623e697 161 SUPERFAMILY SSF109854 5 158 1.28E-34 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_19285 d17d0e7e1815f18b27f2497409fdf2ba 375 Gene3D G3DSA:3.40.50.11750 26 258 4.5E-107 T 13-10-2018 RAM_19285 d17d0e7e1815f18b27f2497409fdf2ba 375 PIRSF PIRSF005622 1 367 1.2E-159 T 13-10-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 RAM_19285 d17d0e7e1815f18b27f2497409fdf2ba 375 Gene3D G3DSA:3.40.50.11740 61 299 4.5E-107 T 13-10-2018 RAM_19285 d17d0e7e1815f18b27f2497409fdf2ba 375 Gene3D G3DSA:1.10.10.2140 313 364 1.4E-23 T 13-10-2018 RAM_19285 d17d0e7e1815f18b27f2497409fdf2ba 375 TIGRFAM TIGR00075 hypD: hydrogenase expression/formation protein HypD 2 364 6.9E-151 T 13-10-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 RAM_19285 d17d0e7e1815f18b27f2497409fdf2ba 375 Pfam PF01924 Hydrogenase formation hypA family 12 361 2.2E-155 T 13-10-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 RAM_43450 031b74e84f65dd616b8df1a33392f86b 228 Gene3D G3DSA:3.40.50.300 2 222 3.9E-65 T 13-10-2018 RAM_43450 031b74e84f65dd616b8df1a33392f86b 228 Pfam PF00005 ABC transporter 21 169 1.6E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_43450 031b74e84f65dd616b8df1a33392f86b 228 SUPERFAMILY SSF52540 4 217 3.12E-65 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_43450 031b74e84f65dd616b8df1a33392f86b 228 PRINTS PR00364 Disease resistance protein signature 116 130 6.7E-5 T 13-10-2018 RAM_43450 031b74e84f65dd616b8df1a33392f86b 228 PRINTS PR00364 Disease resistance protein signature 204 218 6.7E-5 T 13-10-2018 RAM_43450 031b74e84f65dd616b8df1a33392f86b 228 PRINTS PR00364 Disease resistance protein signature 33 48 6.7E-5 T 13-10-2018 RAM_43450 031b74e84f65dd616b8df1a33392f86b 228 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_43450 031b74e84f65dd616b8df1a33392f86b 228 SMART SM00382 30 224 2.2E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_02835 37fce12cfd99aadecba51b8f93d775a8 710 Gene3D G3DSA:2.70.98.70 407 598 1.3E-26 T 13-10-2018 RAM_02835 37fce12cfd99aadecba51b8f93d775a8 710 Gene3D G3DSA:1.50.10.100 24 356 8.0E-55 T 13-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 RAM_02835 37fce12cfd99aadecba51b8f93d775a8 710 SUPERFAMILY SSF48230 115 345 1.46E-25 T 13-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 RAM_02835 37fce12cfd99aadecba51b8f93d775a8 710 Pfam PF07940 Heparinase II/III-like protein 402 695 8.4E-46 T 13-10-2018 IPR012480 Heparinase II/III-like GO:0016829 RAM_02835 37fce12cfd99aadecba51b8f93d775a8 710 Pfam PF16889 Heparinase II/III N-terminus 128 329 2.3E-13 T 13-10-2018 IPR031680 Heparin-sulfate lyase, N-terminal MetaCyc: PWY-7651 RAM_14630 c0bb81747503b53ca96dc7d8667ec51e 357 PIRSF PIRSF000355 10 357 1.5E-127 T 13-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RAM_14630 c0bb81747503b53ca96dc7d8667ec51e 357 SUPERFAMILY SSF47240 20 328 1.5E-94 T 13-10-2018 IPR009078 Ferritin-like superfamily RAM_14630 c0bb81747503b53ca96dc7d8667ec51e 357 Pfam PF00268 Ribonucleotide reductase, small chain 37 324 5.6E-85 T 13-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RAM_14630 c0bb81747503b53ca96dc7d8667ec51e 357 Gene3D G3DSA:1.10.620.20 16 350 1.3E-106 T 13-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 RAM_01185 45791e6a3882b26432b2feedb05d211e 254 Pfam PF14011 EspG family 8 246 2.8E-58 T 13-10-2018 IPR025734 EspG family RAM_19525 4ee1c18144347506f42d476c054b0fd5 485 SUPERFAMILY SSF53720 3 482 3.4E-137 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RAM_19525 4ee1c18144347506f42d476c054b0fd5 485 Gene3D G3DSA:3.40.309.10 260 451 2.0E-147 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RAM_19525 4ee1c18144347506f42d476c054b0fd5 485 Pfam PF00171 Aldehyde dehydrogenase family 16 481 1.3E-137 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RAM_19525 4ee1c18144347506f42d476c054b0fd5 485 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 255 262 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 RAM_19525 4ee1c18144347506f42d476c054b0fd5 485 Gene3D G3DSA:3.40.605.10 9 479 2.0E-147 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RAM_41350 05a60c804cafa1bc28510219f8dfdee1 360 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 3 360 6.9E-129 T 13-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 RAM_41350 05a60c804cafa1bc28510219f8dfdee1 360 SUPERFAMILY SSF52540 3 298 1.49E-72 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_41350 05a60c804cafa1bc28510219f8dfdee1 360 Gene3D G3DSA:3.10.20.30 48 358 1.4E-137 T 13-10-2018 IPR012675 Beta-grasp domain superfamily RAM_41350 05a60c804cafa1bc28510219f8dfdee1 360 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 360 43.242 T 13-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 RAM_41350 05a60c804cafa1bc28510219f8dfdee1 360 Gene3D G3DSA:1.10.150.300 113 198 1.4E-137 T 13-10-2018 IPR023192 TGS-like domain superfamily Reactome: R-HSA-114608 RAM_41350 05a60c804cafa1bc28510219f8dfdee1 360 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 26 44 9.5E-34 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 RAM_41350 05a60c804cafa1bc28510219f8dfdee1 360 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 87 105 9.5E-34 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 RAM_41350 05a60c804cafa1bc28510219f8dfdee1 360 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 85 9.5E-34 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 RAM_41350 05a60c804cafa1bc28510219f8dfdee1 360 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 9.5E-34 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 RAM_41350 05a60c804cafa1bc28510219f8dfdee1 360 Pfam PF06071 Protein of unknown function (DUF933) 276 359 7.3E-39 T 13-10-2018 IPR013029 YchF, C-terminal domain Reactome: R-HSA-114608 RAM_41350 05a60c804cafa1bc28510219f8dfdee1 360 Pfam PF01926 50S ribosome-binding GTPase 5 121 2.6E-21 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 RAM_41350 05a60c804cafa1bc28510219f8dfdee1 360 SUPERFAMILY SSF81271 276 360 6.1E-35 T 13-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 RAM_41350 05a60c804cafa1bc28510219f8dfdee1 360 Gene3D G3DSA:3.40.50.300 4 275 1.4E-137 T 13-10-2018 RAM_41350 05a60c804cafa1bc28510219f8dfdee1 360 PIRSF PIRSF006641 1 360 3.6E-138 T 13-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 RAM_02040 dd8fa99c33d254b51d3ba785e0afad63 282 Pfam PF04672 S-adenosyl methyltransferase 8 281 1.2E-75 T 13-10-2018 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type RAM_02040 dd8fa99c33d254b51d3ba785e0afad63 282 Gene3D G3DSA:3.40.50.150 2 281 6.6E-95 T 13-10-2018 RAM_02040 dd8fa99c33d254b51d3ba785e0afad63 282 SUPERFAMILY SSF53335 10 255 2.65E-46 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_02040 dd8fa99c33d254b51d3ba785e0afad63 282 PIRSF PIRSF017393 1 282 1.6E-80 T 13-10-2018 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type RAM_45275 6829cf64c1af8037567ddad9b1f51640 308 SUPERFAMILY SSF53474 16 307 2.32E-69 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_45275 6829cf64c1af8037567ddad9b1f51640 308 Gene3D G3DSA:3.40.50.1820 16 306 7.7E-73 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_45275 6829cf64c1af8037567ddad9b1f51640 308 Pfam PF00561 alpha/beta hydrolase fold 37 292 6.3E-28 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_45275 6829cf64c1af8037567ddad9b1f51640 308 PRINTS PR00111 Alpha/beta hydrolase fold signature 121 134 5.9E-6 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_45275 6829cf64c1af8037567ddad9b1f51640 308 PRINTS PR00111 Alpha/beta hydrolase fold signature 63 78 5.9E-6 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_45275 6829cf64c1af8037567ddad9b1f51640 308 PRINTS PR00111 Alpha/beta hydrolase fold signature 107 120 5.9E-6 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_45275 6829cf64c1af8037567ddad9b1f51640 308 PRINTS PR00412 Epoxide hydrolase signature 107 120 1.8E-21 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_45275 6829cf64c1af8037567ddad9b1f51640 308 PRINTS PR00412 Epoxide hydrolase signature 63 78 1.8E-21 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_45275 6829cf64c1af8037567ddad9b1f51640 308 PRINTS PR00412 Epoxide hydrolase signature 282 304 1.8E-21 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_45275 6829cf64c1af8037567ddad9b1f51640 308 PRINTS PR00412 Epoxide hydrolase signature 43 61 1.8E-21 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_45275 6829cf64c1af8037567ddad9b1f51640 308 PRINTS PR00412 Epoxide hydrolase signature 248 264 1.8E-21 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_36790 0b8d6a7235e900f70c757ddce42e8c1f 411 Gene3D G3DSA:3.10.129.10 26 181 5.8E-30 T 13-10-2018 RAM_36790 0b8d6a7235e900f70c757ddce42e8c1f 411 Pfam PF13452 N-terminal half of MaoC dehydratase 31 159 2.5E-13 T 13-10-2018 IPR039569 N-terminal of MaoC-like dehydratase Reactome: R-HSA-193368|Reactome: R-HSA-2046106|Reactome: R-HSA-389887|Reactome: R-HSA-390247|Reactome: R-HSA-9033241|Reactome: R-HSA-9033500 RAM_36790 0b8d6a7235e900f70c757ddce42e8c1f 411 SUPERFAMILY SSF54637 32 181 5.77E-20 T 13-10-2018 IPR029069 HotDog domain superfamily RAM_36790 0b8d6a7235e900f70c757ddce42e8c1f 411 Gene3D G3DSA:3.10.129.10 276 379 8.9E-16 T 13-10-2018 RAM_36790 0b8d6a7235e900f70c757ddce42e8c1f 411 SUPERFAMILY SSF54637 211 385 3.95E-16 T 13-10-2018 IPR029069 HotDog domain superfamily RAM_07265 f5f0f54683d93ce3a57b981af805bb47 177 Gene3D G3DSA:3.40.50.300 1 171 4.0E-13 T 13-10-2018 RAM_07265 f5f0f54683d93ce3a57b981af805bb47 177 SUPERFAMILY SSF52540 1 167 4.48E-19 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_07265 f5f0f54683d93ce3a57b981af805bb47 177 Pfam PF03029 Conserved hypothetical ATP binding protein 2 167 2.8E-21 T 13-10-2018 IPR004130 GPN-loop GTPase RAM_31430 7999a33dfd7f12c21d938e608f8c8194 632 TIGRFAM TIGR03062 pip_yhgE_Cterm: YhgE/Pip C-terminal domain 412 619 1.8E-60 T 13-10-2018 IPR017501 Phage infection protein, YhgE, C-terminal RAM_31430 7999a33dfd7f12c21d938e608f8c8194 632 TIGRFAM TIGR03061 pip_yhgE_Nterm: YhgE/Pip N-terminal domain 9 171 2.0E-52 T 13-10-2018 IPR017500 Phage infection protein, YhgE, N-terminal RAM_31430 7999a33dfd7f12c21d938e608f8c8194 632 TIGRFAM TIGR03057 xxxLxxG_by_4: X-X-X-Leu-X-X-Gly heptad repeats 205 230 2.9E-6 T 13-10-2018 IPR023908 xxxLxxG heptad repeat RAM_31430 7999a33dfd7f12c21d938e608f8c8194 632 TIGRFAM TIGR03057 xxxLxxG_by_4: X-X-X-Leu-X-X-Gly heptad repeats 344 371 7.4E-9 T 13-10-2018 IPR023908 xxxLxxG heptad repeat RAM_31430 7999a33dfd7f12c21d938e608f8c8194 632 Pfam PF12698 ABC-2 family transporter protein 407 610 3.4E-14 T 13-10-2018 RAM_31430 7999a33dfd7f12c21d938e608f8c8194 632 Pfam PF12698 ABC-2 family transporter protein 24 161 2.3E-8 T 13-10-2018 RAM_04970 616ea926fb57dd1a213bca5a6836fd8b 325 Pfam PF14021 Tuberculosis necrotizing toxin 236 319 2.3E-24 T 13-10-2018 IPR025331 Tuberculosis necrotizing toxin KEGG: 00760+3.2.2.5 RAM_36645 ccbb4c2031a530743390f7028eaeeaa0 550 Pfam PF13577 SnoaL-like domain 1 115 3.4E-14 T 13-10-2018 IPR037401 SnoaL-like domain RAM_36645 ccbb4c2031a530743390f7028eaeeaa0 550 Pfam PF02515 CoA-transferase family III 158 526 1.7E-119 T 13-10-2018 IPR003673 CoA-transferase family III GO:0003824 RAM_36645 ccbb4c2031a530743390f7028eaeeaa0 550 Gene3D G3DSA:3.30.1540.10 385 477 6.9E-122 T 13-10-2018 RAM_36645 ccbb4c2031a530743390f7028eaeeaa0 550 SUPERFAMILY SSF54427 1 136 3.84E-20 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_36645 ccbb4c2031a530743390f7028eaeeaa0 550 Gene3D G3DSA:3.40.50.10540 157 544 6.9E-122 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily RAM_36645 ccbb4c2031a530743390f7028eaeeaa0 550 Gene3D G3DSA:3.10.450.50 1 126 4.4E-18 T 13-10-2018 RAM_36645 ccbb4c2031a530743390f7028eaeeaa0 550 SUPERFAMILY SSF89796 156 550 3.79E-125 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily RAM_35360 15ce989bb490778a156d793d3bcdde7c 367 Gene3D G3DSA:2.60.40.1220 2 46 1.5E-7 T 13-10-2018 RAM_35360 15ce989bb490778a156d793d3bcdde7c 367 SUPERFAMILY SSF81296 6 47 1.26E-6 T 13-10-2018 IPR014756 Immunoglobulin E-set RAM_35360 15ce989bb490778a156d793d3bcdde7c 367 Pfam PF04234 CopC domain 7 46 3.9E-7 T 13-10-2018 IPR007348 CopC domain GO:0005507|GO:0042597|GO:0046688 RAM_35360 15ce989bb490778a156d793d3bcdde7c 367 Pfam PF05425 Copper resistance protein D 254 360 5.3E-15 T 13-10-2018 IPR008457 Copper resistance protein D GO:0016021 RAM_02015 34dfd34e068ec0ba65d5f534cb04504e 245 SUPERFAMILY SSF81923 98 235 3.92E-24 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 RAM_02015 34dfd34e068ec0ba65d5f534cb04504e 245 Gene3D G3DSA:1.10.1780.10 95 241 8.3E-40 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 RAM_02015 34dfd34e068ec0ba65d5f534cb04504e 245 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 189 236 3.2E-14 T 13-10-2018 IPR004176 Clp, N-terminal RAM_02015 34dfd34e068ec0ba65d5f534cb04504e 245 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 110 161 2.5E-7 T 13-10-2018 IPR004176 Clp, N-terminal RAM_05005 01e757970ef4d6ae0628cad868334ee3 214 Pfam PF00072 Response regulator receiver domain 6 117 5.7E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_05005 01e757970ef4d6ae0628cad868334ee3 214 SMART SM00448 4 117 2.6E-30 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_05005 01e757970ef4d6ae0628cad868334ee3 214 SUPERFAMILY SSF46894 137 211 4.42E-21 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_05005 01e757970ef4d6ae0628cad868334ee3 214 SMART SM00421 149 206 1.5E-24 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_05005 01e757970ef4d6ae0628cad868334ee3 214 Pfam PF00196 Bacterial regulatory proteins, luxR family 152 206 5.8E-18 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_05005 01e757970ef4d6ae0628cad868334ee3 214 Gene3D G3DSA:3.40.50.12740 4 211 1.6E-68 T 13-10-2018 RAM_05005 01e757970ef4d6ae0628cad868334ee3 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 182 194 5.0E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_05005 01e757970ef4d6ae0628cad868334ee3 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 152 166 5.0E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_05005 01e757970ef4d6ae0628cad868334ee3 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 166 182 5.0E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_05005 01e757970ef4d6ae0628cad868334ee3 214 SUPERFAMILY SSF52172 3 135 5.83E-35 T 13-10-2018 IPR011006 CheY-like superfamily RAM_05005 01e757970ef4d6ae0628cad868334ee3 214 ProSitePatterns PS00622 LuxR-type HTH domain signature. 166 193 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_26860 a9b844dad9bd714b6a0c9cd2ed3a6212 577 SUPERFAMILY SSF90123 6 315 4.05E-74 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RAM_26860 a9b844dad9bd714b6a0c9cd2ed3a6212 577 Gene3D G3DSA:1.20.1560.10 2 316 6.3E-84 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RAM_26860 a9b844dad9bd714b6a0c9cd2ed3a6212 577 Pfam PF00664 ABC transporter transmembrane region 17 288 5.7E-47 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 RAM_26860 a9b844dad9bd714b6a0c9cd2ed3a6212 577 SMART SM00382 360 546 5.9E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_26860 a9b844dad9bd714b6a0c9cd2ed3a6212 577 Pfam PF00005 ABC transporter 353 498 1.6E-25 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_26860 a9b844dad9bd714b6a0c9cd2ed3a6212 577 Gene3D G3DSA:3.40.50.300 326 572 2.1E-78 T 13-10-2018 RAM_26860 a9b844dad9bd714b6a0c9cd2ed3a6212 577 ProSitePatterns PS00211 ABC transporters family signature. 472 486 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_26860 a9b844dad9bd714b6a0c9cd2ed3a6212 577 SUPERFAMILY SSF52540 328 570 3.4E-80 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_01195 9635e3c73beb120b0289eb8ea838016f 122 Pfam PF12079 Protein of unknown function (DUF3558) 8 117 4.5E-8 T 13-10-2018 IPR024520 Protein of unknown function DUF3558 RAM_00565 179dc4a597ba029d00bd9f1ec2189312 277 SMART SM00530 17 89 1.2E-6 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_00565 179dc4a597ba029d00bd9f1ec2189312 277 Gene3D G3DSA:1.10.260.40 23 91 2.1E-6 T 13-10-2018 RAM_00565 179dc4a597ba029d00bd9f1ec2189312 277 Pfam PF13560 Helix-turn-helix domain 13 92 1.2E-17 T 13-10-2018 RAM_00565 179dc4a597ba029d00bd9f1ec2189312 277 SUPERFAMILY SSF47413 26 88 1.56E-7 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_00565 179dc4a597ba029d00bd9f1ec2189312 277 Gene3D G3DSA:3.30.450.180 113 275 2.7E-10 T 13-10-2018 RAM_03705 0c8cd5014917eac93801f92fbb4501c1 150 Pfam PF00572 Ribosomal protein L13 15 138 1.4E-57 T 13-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 RAM_03705 0c8cd5014917eac93801f92fbb4501c1 150 PIRSF PIRSF002181 4 150 8.9E-50 T 13-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 RAM_03705 0c8cd5014917eac93801f92fbb4501c1 150 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 7 141 4.0E-62 T 13-10-2018 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_03705 0c8cd5014917eac93801f92fbb4501c1 150 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 15 146 29.283 T 13-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 RAM_03705 0c8cd5014917eac93801f92fbb4501c1 150 ProSitePatterns PS00783 Ribosomal protein L13 signature. 105 127 - T 13-10-2018 IPR023563 Ribosomal protein L13, conserved site GO:0003735|GO:0005840|GO:0006412 RAM_03705 0c8cd5014917eac93801f92fbb4501c1 150 Gene3D G3DSA:3.90.1180.10 1 142 1.3E-61 T 13-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 RAM_03705 0c8cd5014917eac93801f92fbb4501c1 150 SUPERFAMILY SSF52161 4 142 5.23E-60 T 13-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 RAM_16810 3e39612dec4bd59341498933d163342e 435 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 106 292 0.0044 T 13-10-2018 RAM_16810 3e39612dec4bd59341498933d163342e 435 Pfam PF00106 short chain dehydrogenase 106 294 2.2E-44 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_16810 3e39612dec4bd59341498933d163342e 435 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 228 244 6.5E-17 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_16810 3e39612dec4bd59341498933d163342e 435 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 307 327 6.5E-17 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_16810 3e39612dec4bd59341498933d163342e 435 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 192 6.5E-17 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_16810 3e39612dec4bd59341498933d163342e 435 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 107 124 6.5E-17 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_16810 3e39612dec4bd59341498933d163342e 435 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 254 273 6.5E-17 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_16810 3e39612dec4bd59341498933d163342e 435 Gene3D G3DSA:3.40.50.720 89 367 4.8E-60 T 13-10-2018 RAM_16810 3e39612dec4bd59341498933d163342e 435 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 241 269 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_16810 3e39612dec4bd59341498933d163342e 435 SUPERFAMILY SSF51735 105 365 3.01E-60 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_10960 f67c0a53fb6c34bb4ff4d3d3da869d33 476 PIRSF PIRSF006060 11 474 2.5E-57 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RAM_10960 f67c0a53fb6c34bb4ff4d3d3da869d33 476 Gene3D G3DSA:1.20.1740.10 21 473 7.2E-56 T 13-10-2018 RAM_10960 f67c0a53fb6c34bb4ff4d3d3da869d33 476 ProSitePatterns PS00218 Amino acid permeases signature. 54 84 - T 13-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 RAM_10960 f67c0a53fb6c34bb4ff4d3d3da869d33 476 Pfam PF00324 Amino acid permease 29 467 1.6E-103 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 RAM_45920 86559ece086307b24f34bbe51810dbf8 821 SUPERFAMILY SSF56219 496 796 1.87E-30 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily RAM_45920 86559ece086307b24f34bbe51810dbf8 821 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 498 789 1.8E-7 T 13-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase RAM_45920 86559ece086307b24f34bbe51810dbf8 821 Pfam PF00932 Lamin Tail Domain 32 129 2.2E-8 T 13-10-2018 IPR001322 Lamin tail domain RAM_45920 86559ece086307b24f34bbe51810dbf8 821 Gene3D G3DSA:3.60.10.10 495 796 4.2E-33 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily RAM_11385 cd2645582de119915375bd9bf212048b 225 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 172 184 1.1E-9 T 13-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 RAM_11385 cd2645582de119915375bd9bf212048b 225 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 95 109 1.1E-9 T 13-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 RAM_11385 cd2645582de119915375bd9bf212048b 225 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 51 66 1.1E-9 T 13-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 RAM_11385 cd2645582de119915375bd9bf212048b 225 Gene3D G3DSA:2.40.10.10 22 95 5.8E-12 T 13-10-2018 RAM_11385 cd2645582de119915375bd9bf212048b 225 SUPERFAMILY SSF50494 6 224 1.18E-34 T 13-10-2018 IPR009003 Peptidase S1, PA clan RAM_11385 cd2645582de119915375bd9bf212048b 225 SMART SM00020 21 219 2.9E-9 T 13-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 RAM_11385 cd2645582de119915375bd9bf212048b 225 Pfam PF00089 Trypsin 27 219 1.2E-22 T 13-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 RAM_11385 cd2645582de119915375bd9bf212048b 225 Gene3D G3DSA:2.40.10.10 96 223 1.2E-13 T 13-10-2018 RAM_41245 6a5782a05107fa9eb533b94bd707ac1e 594 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 108 506 1.4E-51 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain RAM_41245 6a5782a05107fa9eb533b94bd707ac1e 594 PIRSF PIRSF002741 30 230 4.8E-7 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RAM_41245 6a5782a05107fa9eb533b94bd707ac1e 594 PIRSF PIRSF002741 233 583 2.8E-40 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RAM_41245 6a5782a05107fa9eb533b94bd707ac1e 594 Gene3D G3DSA:3.40.190.10 25 337 3.7E-39 T 13-10-2018 RAM_41245 6a5782a05107fa9eb533b94bd707ac1e 594 Gene3D G3DSA:3.10.105.10 344 563 4.3E-38 T 13-10-2018 RAM_41245 6a5782a05107fa9eb533b94bd707ac1e 594 SUPERFAMILY SSF53850 53 571 2.54E-69 T 13-10-2018 RAM_04525 17d53084e028f9c1d7b24b7b7face9df 194 Pfam PF08281 Sigma-70, region 4 135 187 7.1E-14 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_04525 17d53084e028f9c1d7b24b7b7face9df 194 Gene3D G3DSA:1.10.10.10 131 194 4.1E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_04525 17d53084e028f9c1d7b24b7b7face9df 194 SUPERFAMILY SSF88946 15 117 1.73E-23 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_04525 17d53084e028f9c1d7b24b7b7face9df 194 Gene3D G3DSA:1.10.1740.10 11 126 1.5E-20 T 13-10-2018 RAM_04525 17d53084e028f9c1d7b24b7b7face9df 194 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 31 190 5.5E-25 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_04525 17d53084e028f9c1d7b24b7b7face9df 194 Pfam PF04542 Sigma-70 region 2 35 104 1.1E-13 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_04525 17d53084e028f9c1d7b24b7b7face9df 194 SUPERFAMILY SSF88659 129 192 2.83E-13 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_07110 44c719990772e344ddcb785164458013 600 SUPERFAMILY SSF48208 188 586 3.52E-108 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_07110 44c719990772e344ddcb785164458013 600 Pfam PF00723 Glycosyl hydrolases family 15 216 581 2.1E-62 T 13-10-2018 IPR011613 GH15-like domain Reactome: R-HSA-70221 RAM_07110 44c719990772e344ddcb785164458013 600 Gene3D G3DSA:1.50.10.10 216 594 1.1E-90 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 RAM_35085 d9873bd916b83b5a23999066dfed39d4 521 PIRSF PIRSF000137 1 519 5.7E-140 T 13-10-2018 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 RAM_35085 d9873bd916b83b5a23999066dfed39d4 521 SUPERFAMILY SSF54373 283 460 1.28E-37 T 13-10-2018 RAM_35085 d9873bd916b83b5a23999066dfed39d4 521 SUPERFAMILY SSF51905 1 514 2.27E-86 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_35085 d9873bd916b83b5a23999066dfed39d4 521 Gene3D G3DSA:1.10.1220.110 93 143 3.9E-171 T 13-10-2018 RAM_35085 d9873bd916b83b5a23999066dfed39d4 521 Gene3D G3DSA:4.10.450.10 35 189 3.9E-171 T 13-10-2018 IPR027424 Glucose Oxidase, domain 2 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|Reactome: R-HSA-6798163 RAM_35085 d9873bd916b83b5a23999066dfed39d4 521 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 78 101 - T 13-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 RAM_35085 d9873bd916b83b5a23999066dfed39d4 521 Pfam PF05199 GMC oxidoreductase 377 506 7.8E-33 T 13-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 RAM_35085 d9873bd916b83b5a23999066dfed39d4 521 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 247 261 - T 13-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 RAM_35085 d9873bd916b83b5a23999066dfed39d4 521 Gene3D G3DSA:3.30.410.40 144 457 3.9E-171 T 13-10-2018 RAM_35085 d9873bd916b83b5a23999066dfed39d4 521 Gene3D G3DSA:3.50.50.60 2 509 3.9E-171 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_35085 d9873bd916b83b5a23999066dfed39d4 521 Pfam PF00732 GMC oxidoreductase 2 288 2.8E-92 T 13-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 RAM_45570 f1b7bd63acb0b68507543e553423b5b5 346 SUPERFAMILY SSF55347 130 330 3.4E-58 T 13-10-2018 RAM_45570 f1b7bd63acb0b68507543e553423b5b5 346 SUPERFAMILY SSF51735 5 157 1.25E-46 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_45570 f1b7bd63acb0b68507543e553423b5b5 346 SMART SM00859 6 121 1.8E-44 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 RAM_45570 f1b7bd63acb0b68507543e553423b5b5 346 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 140 329 9.7E-49 T 13-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 RAM_45570 f1b7bd63acb0b68507543e553423b5b5 346 Gene3D G3DSA:3.40.50.720 7 341 2.0E-132 T 13-10-2018 RAM_45570 f1b7bd63acb0b68507543e553423b5b5 346 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 6 121 2.6E-32 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 RAM_45570 f1b7bd63acb0b68507543e553423b5b5 346 TIGRFAM TIGR01296 asd_B: aspartate-semialdehyde dehydrogenase 6 343 3.4E-135 T 13-10-2018 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RAM_45570 f1b7bd63acb0b68507543e553423b5b5 346 PIRSF PIRSF000148 4 346 1.2E-111 T 13-10-2018 RAM_45570 f1b7bd63acb0b68507543e553423b5b5 346 ProSitePatterns PS01103 Aspartate-semialdehyde dehydrogenase signature. 244 258 - T 13-10-2018 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site GO:0004073|GO:0006520|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RAM_45570 f1b7bd63acb0b68507543e553423b5b5 346 Gene3D G3DSA:3.30.360.10 129 330 2.0E-132 T 13-10-2018 RAM_45570 f1b7bd63acb0b68507543e553423b5b5 346 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 4 343 34.872 T 13-10-2018 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RAM_08515 d5ce1507ccdf0c94d4128cc33aebc04b 356 SUPERFAMILY SSF55347 128 294 8.18E-30 T 13-10-2018 RAM_08515 d5ce1507ccdf0c94d4128cc33aebc04b 356 Gene3D G3DSA:3.30.360.10 124 329 1.8E-80 T 13-10-2018 RAM_08515 d5ce1507ccdf0c94d4128cc33aebc04b 356 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 131 235 1.6E-12 T 13-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 RAM_08515 d5ce1507ccdf0c94d4128cc33aebc04b 356 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 1 110 5.9E-22 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 RAM_08515 d5ce1507ccdf0c94d4128cc33aebc04b 356 Gene3D G3DSA:3.40.50.720 2 308 1.8E-80 T 13-10-2018 RAM_08515 d5ce1507ccdf0c94d4128cc33aebc04b 356 SUPERFAMILY SSF51735 1 154 4.06E-38 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_23675 ff4b8f58a9fc6df09815ab857cc56560 235 SUPERFAMILY SSF51182 4 154 7.65E-10 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RAM_23675 ff4b8f58a9fc6df09815ab857cc56560 235 Gene3D G3DSA:2.60.120.10 2 70 1.0E-7 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_23675 ff4b8f58a9fc6df09815ab857cc56560 235 SMART SM00342 150 232 1.1E-19 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_23675 ff4b8f58a9fc6df09815ab857cc56560 235 Gene3D G3DSA:1.10.10.60 133 234 3.6E-20 T 13-10-2018 RAM_23675 ff4b8f58a9fc6df09815ab857cc56560 235 Pfam PF12833 Helix-turn-helix domain 158 233 1.2E-19 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_23675 ff4b8f58a9fc6df09815ab857cc56560 235 SUPERFAMILY SSF46689 186 233 4.93E-7 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_15305 13e52318587bc8b38c4ebc6dfc11a66c 162 SUPERFAMILY SSF46955 15 136 2.27E-31 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily RAM_15305 13e52318587bc8b38c4ebc6dfc11a66c 162 TIGRFAM TIGR01950 SoxR: redox-sensitive transcriptional activator SoxR 15 154 3.4E-62 T 13-10-2018 IPR010211 Redox-sensitive transcriptional activator SoxR GO:0003677|GO:0006355|GO:0006979|GO:0051537 RAM_15305 13e52318587bc8b38c4ebc6dfc11a66c 162 Gene3D G3DSA:1.10.1660.10 12 138 8.2E-36 T 13-10-2018 RAM_15305 13e52318587bc8b38c4ebc6dfc11a66c 162 Pfam PF09278 MerR, DNA binding 57 122 3.3E-18 T 13-10-2018 IPR015358 Transcription regulator MerR, DNA binding RAM_15305 13e52318587bc8b38c4ebc6dfc11a66c 162 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 27 40 1.4E-11 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_15305 13e52318587bc8b38c4ebc6dfc11a66c 162 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 16 27 1.4E-11 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_15305 13e52318587bc8b38c4ebc6dfc11a66c 162 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 50 70 1.4E-11 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_15305 13e52318587bc8b38c4ebc6dfc11a66c 162 Pfam PF00376 MerR family regulatory protein 16 52 5.0E-15 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_15305 13e52318587bc8b38c4ebc6dfc11a66c 162 SMART SM00422 15 83 1.0E-24 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_31065 182effc17aaf2fb4ef052d6ac5e40e97 331 Gene3D G3DSA:3.40.50.1100 7 323 9.4E-111 T 13-10-2018 RAM_31065 182effc17aaf2fb4ef052d6ac5e40e97 331 Gene3D G3DSA:3.40.50.1100 66 164 9.4E-111 T 13-10-2018 RAM_31065 182effc17aaf2fb4ef052d6ac5e40e97 331 PIRSF PIRSF006278 1 331 5.7E-119 T 13-10-2018 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase RAM_31065 182effc17aaf2fb4ef052d6ac5e40e97 331 TIGRFAM TIGR01274 ACC_deam: 1-aminocyclopropane-1-carboxylate deaminase 3 329 8.8E-162 T 13-10-2018 IPR005965 1-aminocyclopropane-1-carboxylate deaminase GO:0008660|GO:0009310|GO:0030170 KEGG: 00270+3.5.99.7 RAM_31065 182effc17aaf2fb4ef052d6ac5e40e97 331 SUPERFAMILY SSF53686 4 329 7.2E-95 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RAM_31065 182effc17aaf2fb4ef052d6ac5e40e97 331 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 13 316 8.1E-45 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RAM_38615 851070e241913f452b71c37f3de86a84 763 SUPERFAMILY SSF141868 528 753 6.02E-67 T 13-10-2018 IPR035919 EAL domain superfamily RAM_38615 851070e241913f452b71c37f3de86a84 763 SMART SM00052 507 754 6.8E-66 T 13-10-2018 IPR001633 EAL domain RAM_38615 851070e241913f452b71c37f3de86a84 763 SMART SM00267 332 505 1.1E-56 T 13-10-2018 IPR000160 GGDEF domain RAM_38615 851070e241913f452b71c37f3de86a84 763 SUPERFAMILY SSF55073 348 507 2.75E-41 T 13-10-2018 IPR029787 Nucleotide cyclase RAM_38615 851070e241913f452b71c37f3de86a84 763 Pfam PF00990 Diguanylate cyclase, GGDEF domain 343 500 2.4E-39 T 13-10-2018 IPR000160 GGDEF domain RAM_38615 851070e241913f452b71c37f3de86a84 763 Gene3D G3DSA:3.30.70.270 330 507 8.0E-51 T 13-10-2018 RAM_38615 851070e241913f452b71c37f3de86a84 763 Gene3D G3DSA:3.20.20.450 519 757 1.1E-71 T 13-10-2018 IPR035919 EAL domain superfamily RAM_38615 851070e241913f452b71c37f3de86a84 763 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 339 504 2.3E-35 T 13-10-2018 IPR000160 GGDEF domain RAM_38615 851070e241913f452b71c37f3de86a84 763 Pfam PF00563 EAL domain 529 749 4.4E-58 T 13-10-2018 IPR001633 EAL domain RAM_10730 17d925e076493c13652d5a27fd49de75 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 5.0E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_10730 17d925e076493c13652d5a27fd49de75 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 5.0E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_10730 17d925e076493c13652d5a27fd49de75 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 5.0E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_10730 17d925e076493c13652d5a27fd49de75 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 5.0E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_10730 17d925e076493c13652d5a27fd49de75 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 5.0E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_10730 17d925e076493c13652d5a27fd49de75 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 5.0E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_10730 17d925e076493c13652d5a27fd49de75 251 Gene3D G3DSA:3.40.50.720 3 250 1.4E-78 T 13-10-2018 RAM_10730 17d925e076493c13652d5a27fd49de75 251 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 10 184 1.4E-4 T 13-10-2018 RAM_10730 17d925e076493c13652d5a27fd49de75 251 SUPERFAMILY SSF51735 8 248 9.4E-77 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_10730 17d925e076493c13652d5a27fd49de75 251 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 19 248 1.3E-58 T 13-10-2018 RAM_10730 17d925e076493c13652d5a27fd49de75 251 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_32440 19a87aeaf2a023f51be20e1f9f7becf0 440 Pfam PF07690 Major Facilitator Superfamily 21 296 1.3E-26 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_32440 19a87aeaf2a023f51be20e1f9f7becf0 440 Gene3D G3DSA:1.20.1250.20 1 410 4.6E-48 T 13-10-2018 RAM_32440 19a87aeaf2a023f51be20e1f9f7becf0 440 SUPERFAMILY SSF103473 8 406 4.71E-53 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_18960 5869d3cf8dfd5f4f8ac1f57d4c68bd93 338 SMART SM00829 10 336 9.1E-4 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_18960 5869d3cf8dfd5f4f8ac1f57d4c68bd93 338 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 58 72 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 RAM_18960 5869d3cf8dfd5f4f8ac1f57d4c68bd93 338 Pfam PF00107 Zinc-binding dehydrogenase 173 283 4.4E-25 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RAM_18960 5869d3cf8dfd5f4f8ac1f57d4c68bd93 338 Gene3D G3DSA:3.90.180.10 5 327 1.1E-88 T 13-10-2018 RAM_18960 5869d3cf8dfd5f4f8ac1f57d4c68bd93 338 Gene3D G3DSA:3.40.50.720 153 300 1.1E-88 T 13-10-2018 RAM_18960 5869d3cf8dfd5f4f8ac1f57d4c68bd93 338 SUPERFAMILY SSF50129 1 161 5.93E-42 T 13-10-2018 IPR011032 GroES-like superfamily RAM_18960 5869d3cf8dfd5f4f8ac1f57d4c68bd93 338 SUPERFAMILY SSF51735 143 305 1.24E-38 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_18960 5869d3cf8dfd5f4f8ac1f57d4c68bd93 338 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 120 7.5E-21 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_40245 3756270f27cbfeb4f2d3263f35caf63a 652 Gene3D G3DSA:2.60.120.260 523 652 7.6E-25 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_40245 3756270f27cbfeb4f2d3263f35caf63a 652 SUPERFAMILY SSF51126 27 514 1.51E-19 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor RAM_40245 3756270f27cbfeb4f2d3263f35caf63a 652 SUPERFAMILY SSF49785 523 651 1.11E-10 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_40245 3756270f27cbfeb4f2d3263f35caf63a 652 SMART SM00710 162 195 2900.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_40245 3756270f27cbfeb4f2d3263f35caf63a 652 SMART SM00710 203 225 97.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_40245 3756270f27cbfeb4f2d3263f35caf63a 652 SMART SM00710 236 258 13.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_40245 3756270f27cbfeb4f2d3263f35caf63a 652 SMART SM00710 259 298 240.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_40245 3756270f27cbfeb4f2d3263f35caf63a 652 SMART SM00710 329 350 1500.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_40245 3756270f27cbfeb4f2d3263f35caf63a 652 SMART SM00710 129 156 480.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_40245 3756270f27cbfeb4f2d3263f35caf63a 652 SMART SM00710 299 321 8900.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_40245 3756270f27cbfeb4f2d3263f35caf63a 652 SMART SM00710 411 433 2100.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_40245 3756270f27cbfeb4f2d3263f35caf63a 652 Pfam PF02018 Carbohydrate binding domain 523 635 6.4E-9 T 13-10-2018 IPR003305 Carbohydrate-binding, CenC-like GO:0016798 RAM_40245 3756270f27cbfeb4f2d3263f35caf63a 652 Pfam PF13229 Right handed beta helix region 204 392 6.3E-6 T 13-10-2018 IPR039448 Right handed beta helix domain RAM_40245 3756270f27cbfeb4f2d3263f35caf63a 652 Gene3D G3DSA:2.160.20.10 38 470 1.1E-23 T 13-10-2018 IPR012334 Pectin lyase fold RAM_20850 801a3c2288a418b68d01813b4be868e0 250 Pfam PF12697 Alpha/beta hydrolase family 4 240 9.0E-13 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_20850 801a3c2288a418b68d01813b4be868e0 250 Gene3D G3DSA:3.40.50.1820 1 250 4.8E-28 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_20850 801a3c2288a418b68d01813b4be868e0 250 SUPERFAMILY SSF53474 2 247 7.07E-27 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_34470 e2b8b8ade12db1fcb7bf6786e1e418a7 289 SUPERFAMILY SSF52266 29 289 2.66E-59 T 13-10-2018 RAM_34470 e2b8b8ade12db1fcb7bf6786e1e418a7 289 Gene3D G3DSA:3.40.50.1110 26 289 2.3E-72 T 13-10-2018 IPR036514 SGNH hydrolase superfamily RAM_34470 e2b8b8ade12db1fcb7bf6786e1e418a7 289 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 34 277 5.3E-26 T 13-10-2018 IPR013830 SGNH hydrolase-type esterase domain RAM_34925 07fa6079f2e7e9cb20ea6f6001ed7705 291 Gene3D G3DSA:3.20.20.30 2 291 4.8E-67 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_34925 07fa6079f2e7e9cb20ea6f6001ed7705 291 Pfam PF00296 Luciferase-like monooxygenase 9 227 1.1E-50 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_34925 07fa6079f2e7e9cb20ea6f6001ed7705 291 TIGRFAM TIGR03619 F420_Rv2161c: probable F420-dependent oxidoreductase, Rv2161c family 17 256 3.0E-62 T 13-10-2018 IPR019921 Luciferase-like, F420-dependent oxidoreductase, Rv2161c, predicted RAM_34925 07fa6079f2e7e9cb20ea6f6001ed7705 291 SUPERFAMILY SSF51679 10 289 1.0E-57 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_01985 22aa1328d074a176f558a7d4c73d4bd4 443 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 17 427 6.4E-102 T 13-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 RAM_01985 22aa1328d074a176f558a7d4c73d4bd4 443 Pfam PF00860 Permease family 18 397 1.9E-94 T 13-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 RAM_01985 22aa1328d074a176f558a7d4c73d4bd4 443 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 344 364 - T 13-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 RAM_01985 22aa1328d074a176f558a7d4c73d4bd4 443 TIGRFAM TIGR03173 pbuX: xanthine permease 21 429 2.0E-142 T 13-10-2018 IPR017588 Uric acid permease UacT-like GO:0016021|GO:0022857|GO:0055085 RAM_23080 f33f13e42bace04c09e3702cc1ce95f8 258 SUPERFAMILY SSF56112 4 248 9.04E-36 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_23080 f33f13e42bace04c09e3702cc1ce95f8 258 Gene3D G3DSA:1.10.510.10 72 223 3.3E-63 T 13-10-2018 RAM_23080 f33f13e42bace04c09e3702cc1ce95f8 258 Gene3D G3DSA:3.30.200.20 1 61 4.6E-12 T 13-10-2018 RAM_23080 f33f13e42bace04c09e3702cc1ce95f8 258 PIRSF PIRSF006221 2 258 4.4E-52 T 13-10-2018 IPR016477 Fructosamine/Ketosamine-3-kinase Reactome: R-HSA-163841 RAM_23080 f33f13e42bace04c09e3702cc1ce95f8 258 Gene3D G3DSA:1.20.1270.240 94 247 3.3E-63 T 13-10-2018 RAM_23080 f33f13e42bace04c09e3702cc1ce95f8 258 Pfam PF03881 Fructosamine kinase 28 251 5.6E-37 T 13-10-2018 IPR016477 Fructosamine/Ketosamine-3-kinase Reactome: R-HSA-163841 RAM_08340 0f1f91005f1142fe43c85e83c5271c00 177 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 31 54 7.7E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_08340 0f1f91005f1142fe43c85e83c5271c00 177 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 10 23 7.7E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_08340 0f1f91005f1142fe43c85e83c5271c00 177 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 55 5.8E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_08340 0f1f91005f1142fe43c85e83c5271c00 177 SUPERFAMILY SSF46689 3 71 3.75E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_08340 0f1f91005f1142fe43c85e83c5271c00 177 Gene3D G3DSA:1.10.357.10 2 177 4.2E-49 T 13-10-2018 RAM_08340 0f1f91005f1142fe43c85e83c5271c00 177 SUPERFAMILY SSF48498 77 173 1.67E-16 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_08005 01bfc023fb9ff54afb6a5f3f02659c85 190 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 56 3.5E-15 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_08005 01bfc023fb9ff54afb6a5f3f02659c85 190 Gene3D G3DSA:1.10.357.10 2 185 5.2E-25 T 13-10-2018 RAM_08005 01bfc023fb9ff54afb6a5f3f02659c85 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 31 54 4.5E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_08005 01bfc023fb9ff54afb6a5f3f02659c85 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 10 23 4.5E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_08005 01bfc023fb9ff54afb6a5f3f02659c85 190 SUPERFAMILY SSF46689 5 69 8.72E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_46190 353b38f8eacb28032b8541d5c0ec7a6d 306 SUPERFAMILY SSF161098 28 297 2.4E-30 T 13-10-2018 IPR035906 MetI-like superfamily RAM_46190 353b38f8eacb28032b8541d5c0ec7a6d 306 Gene3D G3DSA:1.10.3720.10 57 303 3.4E-28 T 13-10-2018 IPR035906 MetI-like superfamily RAM_46190 353b38f8eacb28032b8541d5c0ec7a6d 306 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 5 303 1.6E-88 T 13-10-2018 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 RAM_46190 353b38f8eacb28032b8541d5c0ec7a6d 306 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 298 1.0E-12 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_02325 6d667e1364f50539466553cd03bfdd5e 271 Pfam PF12697 Alpha/beta hydrolase family 26 260 1.7E-20 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_02325 6d667e1364f50539466553cd03bfdd5e 271 PRINTS PR00111 Alpha/beta hydrolase fold signature 51 66 1.1E-6 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_02325 6d667e1364f50539466553cd03bfdd5e 271 PRINTS PR00111 Alpha/beta hydrolase fold signature 214 228 1.1E-6 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_02325 6d667e1364f50539466553cd03bfdd5e 271 PRINTS PR00111 Alpha/beta hydrolase fold signature 95 108 1.1E-6 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_02325 6d667e1364f50539466553cd03bfdd5e 271 Gene3D G3DSA:3.40.50.1820 2 271 9.9E-64 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_02325 6d667e1364f50539466553cd03bfdd5e 271 SUPERFAMILY SSF53474 4 269 2.45E-43 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_12160 1f35442c452568522fb926fb2c9106e1 338 SUPERFAMILY SSF50952 45 269 5.62E-11 T 13-10-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 RAM_16345 333e60299125bd06321f3287bdd6bb06 1392 Gene3D G3DSA:2.70.150.10 672 792 1.4E-31 T 13-10-2018 RAM_16345 333e60299125bd06321f3287bdd6bb06 1392 SUPERFAMILY SSF56784 894 1258 7.15E-42 T 13-10-2018 IPR036412 HAD-like superfamily RAM_16345 333e60299125bd06321f3287bdd6bb06 1392 Gene3D G3DSA:1.20.1110.10 793 914 3.8E-17 T 13-10-2018 RAM_16345 333e60299125bd06321f3287bdd6bb06 1392 SUPERFAMILY SSF81653 700 795 4.45E-23 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 RAM_16345 333e60299125bd06321f3287bdd6bb06 1392 Gene3D G3DSA:3.40.50.1000 1054 1202 3.1E-38 T 13-10-2018 IPR023214 HAD superfamily RAM_16345 333e60299125bd06321f3287bdd6bb06 1392 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 736 750 5.5E-28 T 13-10-2018 RAM_16345 333e60299125bd06321f3287bdd6bb06 1392 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 1154 1173 5.5E-28 T 13-10-2018 RAM_16345 333e60299125bd06321f3287bdd6bb06 1392 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 896 910 5.5E-28 T 13-10-2018 RAM_16345 333e60299125bd06321f3287bdd6bb06 1392 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 1178 1190 5.5E-28 T 13-10-2018 RAM_16345 333e60299125bd06321f3287bdd6bb06 1392 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 1053 1064 5.5E-28 T 13-10-2018 RAM_16345 333e60299125bd06321f3287bdd6bb06 1392 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 1075 1085 5.5E-28 T 13-10-2018 RAM_16345 333e60299125bd06321f3287bdd6bb06 1392 SUPERFAMILY SSF81660 927 1063 5.23E-5 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 RAM_16345 333e60299125bd06321f3287bdd6bb06 1392 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 1125 1234 1.1E-25 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RAM_16345 333e60299125bd06321f3287bdd6bb06 1392 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 665 931 1.1E-28 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RAM_16345 333e60299125bd06321f3287bdd6bb06 1392 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 898 904 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 RAM_16345 333e60299125bd06321f3287bdd6bb06 1392 Pfam PF00122 E1-E2 ATPase 693 875 8.3E-39 T 13-10-2018 RAM_16345 333e60299125bd06321f3287bdd6bb06 1392 Gene3D G3DSA:3.40.1110.10 921 1053 4.8E-20 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 RAM_16345 333e60299125bd06321f3287bdd6bb06 1392 Pfam PF00702 haloacid dehalogenase-like hydrolase 893 1168 1.0E-23 T 13-10-2018 RAM_16345 333e60299125bd06321f3287bdd6bb06 1392 Pfam PF00689 Cation transporting ATPase, C-terminus 1239 1373 1.5E-14 T 13-10-2018 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 RAM_16345 333e60299125bd06321f3287bdd6bb06 1392 SUPERFAMILY SSF81665 631 1373 2.09E-50 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 RAM_16345 333e60299125bd06321f3287bdd6bb06 1392 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 1012 1030 6.5E-15 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RAM_16345 333e60299125bd06321f3287bdd6bb06 1392 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 1126 1142 6.5E-15 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RAM_16345 333e60299125bd06321f3287bdd6bb06 1392 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 1186 1211 6.5E-15 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RAM_16345 333e60299125bd06321f3287bdd6bb06 1392 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 1154 1170 6.5E-15 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RAM_30665 8717c7297ab8b93c783538c14d29f03f 69 SUPERFAMILY SSF46689 32 66 4.48E-5 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_30665 8717c7297ab8b93c783538c14d29f03f 69 Gene3D G3DSA:1.10.10.60 23 67 2.4E-5 T 13-10-2018 RAM_30665 8717c7297ab8b93c783538c14d29f03f 69 Pfam PF13384 Homeodomain-like domain 36 62 1.6E-6 T 13-10-2018 RAM_41470 a8b23342963194e4e68d061a70d108e8 479 SUPERFAMILY SSF51412 13 474 8.9E-92 T 13-10-2018 RAM_41470 a8b23342963194e4e68d061a70d108e8 479 Gene3D G3DSA:3.20.20.70 5 476 5.2E-136 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_41470 a8b23342963194e4e68d061a70d108e8 479 TIGRFAM TIGR01303 IMP_DH_rel_1: IMP dehydrogenase family protein 2 477 9.6E-243 T 13-10-2018 IPR005991 IMP dehydrogenase-related 1 RAM_41470 a8b23342963194e4e68d061a70d108e8 479 SUPERFAMILY SSF54631 98 197 7.07E-15 T 13-10-2018 RAM_41470 a8b23342963194e4e68d061a70d108e8 479 PIRSF PIRSF000130 4 479 2.6E-140 T 13-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 RAM_41470 a8b23342963194e4e68d061a70d108e8 479 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 13 474 5.2E-104 T 13-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 RAM_41470 a8b23342963194e4e68d061a70d108e8 479 SMART SM01240 11 475 1.1E-189 T 13-10-2018 RAM_41470 a8b23342963194e4e68d061a70d108e8 479 Pfam PF00571 CBS domain 100 137 5.5E-4 T 13-10-2018 IPR000644 CBS domain RAM_15090 4f478b1d27676f7e3c28342ed887ba1c 447 Gene3D G3DSA:3.90.1150.10 40 411 9.8E-100 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_15090 4f478b1d27676f7e3c28342ed887ba1c 447 Pfam PF00266 Aminotransferase class-V 44 411 9.3E-78 T 13-10-2018 IPR000192 Aminotransferase class V domain RAM_15090 4f478b1d27676f7e3c28342ed887ba1c 447 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 225 244 - T 13-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site RAM_15090 4f478b1d27676f7e3c28342ed887ba1c 447 Gene3D G3DSA:3.40.640.10 60 308 9.8E-100 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_15090 4f478b1d27676f7e3c28342ed887ba1c 447 SUPERFAMILY SSF53383 40 420 1.48E-81 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_28735 86da8042330866e26603dd03b6ddcde0 65 Gene3D G3DSA:3.40.50.150 2 65 5.7E-7 T 13-10-2018 RAM_27715 62e6f7f18fde2fba8bf44d4ee23376c2 98 Pfam PF04673 Polyketide synthesis cyclase 1 95 4.9E-37 T 13-10-2018 IPR006765 Polyketide synthesis cyclase GO:0030639 RAM_27715 62e6f7f18fde2fba8bf44d4ee23376c2 98 SUPERFAMILY SSF54909 1 97 3.97E-35 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_27715 62e6f7f18fde2fba8bf44d4ee23376c2 98 Gene3D G3DSA:3.30.70.1090 1 98 2.0E-34 T 13-10-2018 IPR038474 Polyketide synthesis cyclase superfamily RAM_27715 62e6f7f18fde2fba8bf44d4ee23376c2 98 ProDom PD012644 CYCLASE POLYKETIDE II SYNTHESIS ORF SYNTHASE JADI BIOSYNTHESIS ANTIBIOTIC CYCLASE-LIKE 1 97 7.0E-27 T 13-10-2018 IPR006765 Polyketide synthesis cyclase GO:0030639 RAM_06090 a0aef61f43db8031d4f12623d042e409 244 Gene3D G3DSA:1.20.120.530 105 237 8.9E-22 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_06090 a0aef61f43db8031d4f12623d042e409 244 SUPERFAMILY SSF46785 14 91 1.4E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_06090 a0aef61f43db8031d4f12623d042e409 244 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 45 59 2.8E-8 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_06090 a0aef61f43db8031d4f12623d042e409 244 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 59 75 2.8E-8 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_06090 a0aef61f43db8031d4f12623d042e409 244 SMART SM00895 112 229 4.2E-10 T 13-10-2018 IPR011711 GntR, C-terminal RAM_06090 a0aef61f43db8031d4f12623d042e409 244 Pfam PF07729 FCD domain 118 228 5.7E-18 T 13-10-2018 IPR011711 GntR, C-terminal RAM_06090 a0aef61f43db8031d4f12623d042e409 244 Gene3D G3DSA:1.10.10.10 24 94 1.1E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_06090 a0aef61f43db8031d4f12623d042e409 244 Pfam PF00392 Bacterial regulatory proteins, gntR family 23 82 4.8E-16 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_06090 a0aef61f43db8031d4f12623d042e409 244 SUPERFAMILY SSF48008 108 236 1.02E-17 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_06090 a0aef61f43db8031d4f12623d042e409 244 SMART SM00345 26 87 1.9E-14 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_32155 9b47244c6918d60b055a0f4785415843 854 Pfam PF01841 Transglutaminase-like superfamily 441 556 4.2E-24 T 13-10-2018 IPR002931 Transglutaminase-like RAM_32155 9b47244c6918d60b055a0f4785415843 854 SMART SM00460 489 558 1.2E-19 T 13-10-2018 IPR002931 Transglutaminase-like RAM_32155 9b47244c6918d60b055a0f4785415843 854 Gene3D G3DSA:3.10.620.30 402 569 8.2E-23 T 13-10-2018 RAM_32155 9b47244c6918d60b055a0f4785415843 854 SUPERFAMILY SSF54001 422 565 7.57E-34 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily RAM_08040 5e6a12e9b1d40d8dbedfd7ce5be0601e 245 Gene3D G3DSA:3.20.20.60 1 237 1.5E-67 T 13-10-2018 RAM_08040 5e6a12e9b1d40d8dbedfd7ce5be0601e 245 SUPERFAMILY SSF51621 3 240 1.33E-53 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 RAM_08040 5e6a12e9b1d40d8dbedfd7ce5be0601e 245 Pfam PF13714 Phosphoenolpyruvate phosphomutase 6 236 1.0E-67 T 13-10-2018 RAM_21545 73d411cf3322d21c34d43f1fe098dc57 237 Gene3D G3DSA:2.60.120.620 22 233 1.4E-8 T 13-10-2018 RAM_21545 73d411cf3322d21c34d43f1fe098dc57 237 Pfam PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA 65 236 2.5E-80 T 13-10-2018 IPR018655 Protein of unknown function DUF2086 RAM_25535 ada37f5b73d806ef17f43a4df906a447 196 Gene3D G3DSA:1.10.357.10 7 193 2.3E-26 T 13-10-2018 RAM_25535 ada37f5b73d806ef17f43a4df906a447 196 SUPERFAMILY SSF46689 11 91 2.05E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_25535 ada37f5b73d806ef17f43a4df906a447 196 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 68 6.3E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_39510 ce32fb11b7f9b2ccc7d2300e92db00d7 485 Gene3D G3DSA:3.50.50.60 305 484 2.0E-38 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_39510 ce32fb11b7f9b2ccc7d2300e92db00d7 485 Pfam PF00743 Flavin-binding monooxygenase-like 9 343 4.2E-16 T 13-10-2018 IPR020946 Flavin monooxygenase-like GO:0004499|GO:0050660|GO:0050661|GO:0055114 RAM_39510 ce32fb11b7f9b2ccc7d2300e92db00d7 485 Gene3D G3DSA:3.50.50.60 2 254 4.7E-57 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_39510 ce32fb11b7f9b2ccc7d2300e92db00d7 485 SUPERFAMILY SSF51905 9 413 5.44E-55 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_21680 8f059ed88d05585ab440b1498b4d01ca 326 SUPERFAMILY SSF46955 7 114 2.42E-22 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily RAM_21680 8f059ed88d05585ab440b1498b4d01ca 326 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 19 32 1.9E-10 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_21680 8f059ed88d05585ab440b1498b4d01ca 326 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 8 19 1.9E-10 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_21680 8f059ed88d05585ab440b1498b4d01ca 326 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 43 63 1.9E-10 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_21680 8f059ed88d05585ab440b1498b4d01ca 326 Pfam PF13411 MerR HTH family regulatory protein 8 74 4.4E-14 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_21680 8f059ed88d05585ab440b1498b4d01ca 326 SMART SM00422 7 76 3.8E-19 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_21680 8f059ed88d05585ab440b1498b4d01ca 326 Gene3D G3DSA:1.10.1660.10 1 119 6.2E-23 T 13-10-2018 RAM_29985 e8e001e697e384869e907b0785263d23 284 Pfam PF04672 S-adenosyl methyltransferase 13 279 4.1E-73 T 13-10-2018 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type RAM_29985 e8e001e697e384869e907b0785263d23 284 Gene3D G3DSA:3.40.50.150 6 283 1.1E-90 T 13-10-2018 RAM_29985 e8e001e697e384869e907b0785263d23 284 SUPERFAMILY SSF53335 20 251 1.82E-35 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_29985 e8e001e697e384869e907b0785263d23 284 PIRSF PIRSF017393 1 284 1.3E-76 T 13-10-2018 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type RAM_15665 1f5f2a469b0bff08627034cbe47b2f3f 154 Gene3D G3DSA:3.10.180.10 9 154 6.4E-28 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_15665 1f5f2a469b0bff08627034cbe47b2f3f 154 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 6 146 1.3E-5 T 13-10-2018 IPR028973 PhnB-like RAM_15665 1f5f2a469b0bff08627034cbe47b2f3f 154 SUPERFAMILY SSF54593 4 146 7.74E-23 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_31050 c85c3d4019aef3cb5f43ce8ec25c0659 175 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 72 155 1.5E-33 T 13-10-2018 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 RAM_31050 c85c3d4019aef3cb5f43ce8ec25c0659 175 SUPERFAMILY SSF54364 2 66 5.49E-24 T 13-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 RAM_31050 c85c3d4019aef3cb5f43ce8ec25c0659 175 Gene3D G3DSA:3.10.20.80 1 63 1.5E-26 T 13-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 RAM_31050 c85c3d4019aef3cb5f43ce8ec25c0659 175 ProSitePatterns PS00938 Initiation factor 3 signature. 46 59 - T 13-10-2018 IPR019813 Translation initiation factor 3, conserved site GO:0003743|GO:0006413 RAM_31050 c85c3d4019aef3cb5f43ce8ec25c0659 175 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 1 63 5.9E-26 T 13-10-2018 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 RAM_31050 c85c3d4019aef3cb5f43ce8ec25c0659 175 Gene3D G3DSA:3.30.110.10 64 159 5.2E-33 T 13-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 RAM_31050 c85c3d4019aef3cb5f43ce8ec25c0659 175 SUPERFAMILY SSF55200 73 157 5.1E-30 T 13-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 RAM_31050 c85c3d4019aef3cb5f43ce8ec25c0659 175 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 1 158 26.264 T 13-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 RAM_31050 c85c3d4019aef3cb5f43ce8ec25c0659 175 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 2 157 3.5E-57 T 13-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 RAM_15640 d38f63c8ee71335ad055308d82bed7b5 230 Pfam PF01670 Glycosyl hydrolase family 12 77 227 2.0E-20 T 13-10-2018 IPR002594 Glycoside hydrolase family 12 GO:0000272|GO:0008810 RAM_15640 d38f63c8ee71335ad055308d82bed7b5 230 SUPERFAMILY SSF49899 30 228 4.98E-46 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily RAM_15640 d38f63c8ee71335ad055308d82bed7b5 230 Gene3D G3DSA:2.60.120.180 30 230 9.6E-55 T 13-10-2018 IPR013319 Glycoside hydrolase family 11/12 GO:0004553 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_12030 66084c973c7482290c53fb01c94bb0a5 465 SMART SM00387 356 465 7.5E-21 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_12030 66084c973c7482290c53fb01c94bb0a5 465 SMART SM00388 247 312 6.7E-13 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_12030 66084c973c7482290c53fb01c94bb0a5 465 SUPERFAMILY SSF55874 302 464 2.36E-30 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_12030 66084c973c7482290c53fb01c94bb0a5 465 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 360 463 2.2E-17 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_12030 66084c973c7482290c53fb01c94bb0a5 465 SUPERFAMILY SSF47384 231 311 2.75E-13 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RAM_12030 66084c973c7482290c53fb01c94bb0a5 465 Pfam PF00512 His Kinase A (phospho-acceptor) domain 248 311 7.4E-10 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_12030 66084c973c7482290c53fb01c94bb0a5 465 Gene3D G3DSA:3.30.565.10 316 465 1.5E-28 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_12030 66084c973c7482290c53fb01c94bb0a5 465 Pfam PF00672 HAMP domain 189 241 2.6E-6 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_12030 66084c973c7482290c53fb01c94bb0a5 465 SMART SM00304 189 246 4.3E-7 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_12030 66084c973c7482290c53fb01c94bb0a5 465 Gene3D G3DSA:1.10.287.130 193 312 4.5E-22 T 13-10-2018 RAM_12030 66084c973c7482290c53fb01c94bb0a5 465 PRINTS PR00344 Bacterial sensor protein C-terminal signature 426 444 1.3E-6 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_12030 66084c973c7482290c53fb01c94bb0a5 465 PRINTS PR00344 Bacterial sensor protein C-terminal signature 393 407 1.3E-6 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_00555 bd3f8b247fc7b7c799c07b610ef3c95f 174 Gene3D G3DSA:1.10.1740.10 6 80 4.6E-10 T 13-10-2018 RAM_00555 bd3f8b247fc7b7c799c07b610ef3c95f 174 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 16 164 7.4E-16 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_00555 bd3f8b247fc7b7c799c07b610ef3c95f 174 SUPERFAMILY SSF88659 105 167 2.43E-11 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_00555 bd3f8b247fc7b7c799c07b610ef3c95f 174 Gene3D G3DSA:1.10.10.10 82 170 1.2E-12 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_00555 bd3f8b247fc7b7c799c07b610ef3c95f 174 SUPERFAMILY SSF88946 13 100 2.16E-12 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_00555 bd3f8b247fc7b7c799c07b610ef3c95f 174 Pfam PF04542 Sigma-70 region 2 17 84 2.6E-10 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_00555 bd3f8b247fc7b7c799c07b610ef3c95f 174 Pfam PF08281 Sigma-70, region 4 112 161 2.3E-8 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_24370 ca6579eccdfbc6dbe4e766c708a68eab 248 SMART SM00895 110 233 3.4E-23 T 13-10-2018 IPR011711 GntR, C-terminal RAM_24370 ca6579eccdfbc6dbe4e766c708a68eab 248 SUPERFAMILY SSF48008 109 238 1.2E-25 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_24370 ca6579eccdfbc6dbe4e766c708a68eab 248 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 81 8.2E-22 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_24370 ca6579eccdfbc6dbe4e766c708a68eab 248 Pfam PF07729 FCD domain 110 232 1.3E-28 T 13-10-2018 IPR011711 GntR, C-terminal RAM_24370 ca6579eccdfbc6dbe4e766c708a68eab 248 SMART SM00345 22 81 9.8E-22 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_24370 ca6579eccdfbc6dbe4e766c708a68eab 248 Gene3D G3DSA:1.10.10.10 14 86 1.5E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_24370 ca6579eccdfbc6dbe4e766c708a68eab 248 SUPERFAMILY SSF46785 15 85 1.73E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_24370 ca6579eccdfbc6dbe4e766c708a68eab 248 Gene3D G3DSA:1.20.120.530 108 241 1.4E-28 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_24370 ca6579eccdfbc6dbe4e766c708a68eab 248 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 41 55 2.4E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_24370 ca6579eccdfbc6dbe4e766c708a68eab 248 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 55 71 2.4E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_35795 244fe72f04c63cf58bba5e412c0c5981 250 Gene3D G3DSA:3.40.50.720 4 249 2.5E-50 T 13-10-2018 RAM_35795 244fe72f04c63cf58bba5e412c0c5981 250 SUPERFAMILY SSF51735 6 246 1.63E-52 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_35795 244fe72f04c63cf58bba5e412c0c5981 250 Pfam PF00106 short chain dehydrogenase 6 198 1.7E-41 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_35795 244fe72f04c63cf58bba5e412c0c5981 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 1.9E-19 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_35795 244fe72f04c63cf58bba5e412c0c5981 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 1.9E-19 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_35795 244fe72f04c63cf58bba5e412c0c5981 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 1.9E-19 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_35795 244fe72f04c63cf58bba5e412c0c5981 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 1.9E-19 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_35795 244fe72f04c63cf58bba5e412c0c5981 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 1.9E-19 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_35795 244fe72f04c63cf58bba5e412c0c5981 250 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 5 187 0.0058 T 13-10-2018 RAM_08825 e7b7f186df5c1f1c8fdfe2575c704061 237 SUPERFAMILY SSF52172 4 132 5.69E-38 T 13-10-2018 IPR011006 CheY-like superfamily RAM_08825 e7b7f186df5c1f1c8fdfe2575c704061 237 SMART SM00448 7 118 3.8E-39 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_08825 e7b7f186df5c1f1c8fdfe2575c704061 237 SUPERFAMILY SSF46894 133 232 3.12E-28 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_08825 e7b7f186df5c1f1c8fdfe2575c704061 237 Pfam PF00072 Response regulator receiver domain 10 118 8.0E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_08825 e7b7f186df5c1f1c8fdfe2575c704061 237 Gene3D G3DSA:1.10.10.10 137 237 2.9E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_08825 e7b7f186df5c1f1c8fdfe2575c704061 237 Pfam PF00486 Transcriptional regulatory protein, C terminal 160 231 1.5E-23 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_08825 e7b7f186df5c1f1c8fdfe2575c704061 237 SMART SM00862 156 232 4.7E-24 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_08825 e7b7f186df5c1f1c8fdfe2575c704061 237 Gene3D G3DSA:3.40.50.2300 2 136 5.2E-34 T 13-10-2018 RAM_21820 440f86844df6a0db94822185e59c725f 357 Gene3D G3DSA:3.40.50.720 1 324 2.7E-44 T 13-10-2018 RAM_21820 440f86844df6a0db94822185e59c725f 357 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 228 1.5E-21 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 RAM_21820 440f86844df6a0db94822185e59c725f 357 SUPERFAMILY SSF51735 2 321 6.33E-43 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_19145 a629e54cc91379cb78202be04b4b1f77 193 Gene3D G3DSA:1.10.1740.10 25 102 1.3E-10 T 13-10-2018 RAM_19145 a629e54cc91379cb78202be04b4b1f77 193 Pfam PF08281 Sigma-70, region 4 135 182 1.8E-10 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_19145 a629e54cc91379cb78202be04b4b1f77 193 Gene3D G3DSA:1.10.10.10 132 191 6.8E-14 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_19145 a629e54cc91379cb78202be04b4b1f77 193 Pfam PF04542 Sigma-70 region 2 40 103 8.9E-8 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_19145 a629e54cc91379cb78202be04b4b1f77 193 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 37 184 3.5E-14 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_19145 a629e54cc91379cb78202be04b4b1f77 193 SUPERFAMILY SSF88659 130 183 3.55E-11 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_19145 a629e54cc91379cb78202be04b4b1f77 193 SUPERFAMILY SSF88946 36 119 1.02E-10 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_09210 e7825bcc4d149ff51bca0bac3f90f59a 125 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 4 123 37.877 T 13-10-2018 IPR002930 Glycine cleavage system H-protein GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 RAM_09210 e7825bcc4d149ff51bca0bac3f90f59a 125 Gene3D G3DSA:2.40.50.100 1 125 2.6E-47 T 13-10-2018 RAM_09210 e7825bcc4d149ff51bca0bac3f90f59a 125 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 3 124 3.7E-46 T 13-10-2018 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 RAM_09210 e7825bcc4d149ff51bca0bac3f90f59a 125 Pfam PF01597 Glycine cleavage H-protein 7 124 5.5E-42 T 13-10-2018 IPR033753 Glycine cleavage system H-protein/Simiate RAM_09210 e7825bcc4d149ff51bca0bac3f90f59a 125 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 47 76 - T 13-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 RAM_09210 e7825bcc4d149ff51bca0bac3f90f59a 125 SUPERFAMILY SSF51230 3 123 2.09E-39 T 13-10-2018 IPR011053 Single hybrid motif RAM_19435 8f29e45f7911bdacd890d7a516e51e64 363 SUPERFAMILY SSF51679 1 321 6.02E-62 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_19435 8f29e45f7911bdacd890d7a516e51e64 363 Pfam PF00296 Luciferase-like monooxygenase 11 284 3.4E-39 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_19435 8f29e45f7911bdacd890d7a516e51e64 363 Gene3D G3DSA:3.20.20.30 3 326 3.6E-67 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_11050 b0b96c616519109e2dc359959c6e579f 457 Gene3D G3DSA:3.30.390.30 336 455 8.5E-33 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RAM_11050 b0b96c616519109e2dc359959c6e579f 457 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 40 50 - T 13-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 RAM_11050 b0b96c616519109e2dc359959c6e579f 457 Gene3D G3DSA:3.50.50.60 7 322 5.6E-108 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_11050 b0b96c616519109e2dc359959c6e579f 457 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 317 2.7E-73 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAM_11050 b0b96c616519109e2dc359959c6e579f 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 39 54 9.3E-70 T 13-10-2018 RAM_11050 b0b96c616519109e2dc359959c6e579f 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 255 269 9.3E-70 T 13-10-2018 RAM_11050 b0b96c616519109e2dc359959c6e579f 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 135 144 9.3E-70 T 13-10-2018 RAM_11050 b0b96c616519109e2dc359959c6e579f 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 419 439 9.3E-70 T 13-10-2018 RAM_11050 b0b96c616519109e2dc359959c6e579f 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 297 304 9.3E-70 T 13-10-2018 RAM_11050 b0b96c616519109e2dc359959c6e579f 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 397 412 9.3E-70 T 13-10-2018 RAM_11050 b0b96c616519109e2dc359959c6e579f 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 333 354 9.3E-70 T 13-10-2018 RAM_11050 b0b96c616519109e2dc359959c6e579f 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 170 195 9.3E-70 T 13-10-2018 RAM_11050 b0b96c616519109e2dc359959c6e579f 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 9.3E-70 T 13-10-2018 RAM_11050 b0b96c616519109e2dc359959c6e579f 457 SUPERFAMILY SSF51905 3 360 2.38E-62 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_11050 b0b96c616519109e2dc359959c6e579f 457 Gene3D G3DSA:3.50.50.60 144 261 5.6E-108 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_11050 b0b96c616519109e2dc359959c6e579f 457 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 282 304 2.1E-39 T 13-10-2018 RAM_11050 b0b96c616519109e2dc359959c6e579f 457 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 254 270 2.1E-39 T 13-10-2018 RAM_11050 b0b96c616519109e2dc359959c6e579f 457 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 170 188 2.1E-39 T 13-10-2018 RAM_11050 b0b96c616519109e2dc359959c6e579f 457 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 132 150 2.1E-39 T 13-10-2018 RAM_11050 b0b96c616519109e2dc359959c6e579f 457 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 2.1E-39 T 13-10-2018 RAM_11050 b0b96c616519109e2dc359959c6e579f 457 PIRSF PIRSF000350 2 439 2.2E-72 T 13-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 RAM_11050 b0b96c616519109e2dc359959c6e579f 457 SUPERFAMILY SSF55424 336 454 1.6E-29 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RAM_11050 b0b96c616519109e2dc359959c6e579f 457 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 6 455 4.9E-140 T 13-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 RAM_11050 b0b96c616519109e2dc359959c6e579f 457 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 337 444 2.8E-25 T 13-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RAM_46145 9522b40a752b7e4ae1f722f8b970ef4f 176 Pfam PF00857 Isochorismatase family 5 171 7.7E-26 T 13-10-2018 IPR000868 Isochorismatase-like GO:0003824 RAM_46145 9522b40a752b7e4ae1f722f8b970ef4f 176 Gene3D G3DSA:3.40.50.850 2 176 1.1E-28 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 RAM_46145 9522b40a752b7e4ae1f722f8b970ef4f 176 SUPERFAMILY SSF52499 4 175 1.44E-29 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 RAM_31010 0b14d75442ff71b910fc7f3cc994c517 527 Pfam PF00561 alpha/beta hydrolase fold 88 263 8.2E-24 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_31010 0b14d75442ff71b910fc7f3cc994c517 527 Pfam PF08386 TAP-like protein 387 481 4.5E-19 T 13-10-2018 IPR013595 Peptidase S33 tripeptidyl aminopeptidase-like, C-terminal RAM_31010 0b14d75442ff71b910fc7f3cc994c517 527 SUPERFAMILY SSF53474 85 472 2.55E-19 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_21580 054132befdc407bb9ea997b5e884dac8 455 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 253 290 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RAM_21580 054132befdc407bb9ea997b5e884dac8 455 Pfam PF00202 Aminotransferase class-III 32 448 6.4E-94 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RAM_21580 054132befdc407bb9ea997b5e884dac8 455 PIRSF PIRSF000521 18 451 2.7E-25 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RAM_21580 054132befdc407bb9ea997b5e884dac8 455 Gene3D G3DSA:3.40.640.10 65 340 2.4E-155 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_21580 054132befdc407bb9ea997b5e884dac8 455 Gene3D G3DSA:3.90.1150.10 12 448 2.4E-155 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_21580 054132befdc407bb9ea997b5e884dac8 455 SUPERFAMILY SSF53383 12 449 5.7E-127 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_02620 5c44094ef8bee6423fbf35dcd0ec0ac7 506 Gene3D G3DSA:1.10.390.60 251 463 1.2E-32 T 13-10-2018 RAM_02620 5c44094ef8bee6423fbf35dcd0ec0ac7 506 Pfam PF01433 Peptidase family M1 domain 314 458 1.2E-25 T 13-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RAM_02620 5c44094ef8bee6423fbf35dcd0ec0ac7 506 Gene3D G3DSA:2.60.40.1730 48 230 1.0E-26 T 13-10-2018 RAM_02620 5c44094ef8bee6423fbf35dcd0ec0ac7 506 SUPERFAMILY SSF55486 241 467 3.42E-47 T 13-10-2018 RAM_02620 5c44094ef8bee6423fbf35dcd0ec0ac7 506 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 337 349 9.5E-14 T 13-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RAM_02620 5c44094ef8bee6423fbf35dcd0ec0ac7 506 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 213 228 9.5E-14 T 13-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RAM_02620 5c44094ef8bee6423fbf35dcd0ec0ac7 506 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 318 333 9.5E-14 T 13-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RAM_02620 5c44094ef8bee6423fbf35dcd0ec0ac7 506 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 165 180 9.5E-14 T 13-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RAM_02620 5c44094ef8bee6423fbf35dcd0ec0ac7 506 SUPERFAMILY SSF63737 35 229 4.45E-35 T 13-10-2018 RAM_17230 b25d92283f177ac5f5831a1297919bc8 376 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 8 118 2.9E-17 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_17230 b25d92283f177ac5f5831a1297919bc8 376 Gene3D G3DSA:1.10.540.10 2 117 8.1E-24 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_17230 b25d92283f177ac5f5831a1297919bc8 376 Gene3D G3DSA:2.40.110.10 122 232 8.9E-32 T 13-10-2018 RAM_17230 b25d92283f177ac5f5831a1297919bc8 376 Gene3D G3DSA:1.20.140.10 233 375 7.0E-29 T 13-10-2018 RAM_17230 b25d92283f177ac5f5831a1297919bc8 376 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 228 368 7.6E-21 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_17230 b25d92283f177ac5f5831a1297919bc8 376 SUPERFAMILY SSF56645 2 240 1.7E-63 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_17230 b25d92283f177ac5f5831a1297919bc8 376 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 123 216 2.8E-17 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RAM_17230 b25d92283f177ac5f5831a1297919bc8 376 SUPERFAMILY SSF47203 228 372 3.87E-21 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_40340 946ad0b90e894902ddeb879e73f05de1 261 SUPERFAMILY SSF46785 24 92 2.07E-9 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_40340 946ad0b90e894902ddeb879e73f05de1 261 SUPERFAMILY SSF55781 95 256 2.22E-33 T 13-10-2018 RAM_40340 946ad0b90e894902ddeb879e73f05de1 261 Pfam PF01614 Bacterial transcriptional regulator 139 254 5.4E-11 T 13-10-2018 IPR014757 Transcription regulator IclR, C-terminal RAM_40340 946ad0b90e894902ddeb879e73f05de1 261 Gene3D G3DSA:3.30.450.40 92 249 9.2E-35 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_40340 946ad0b90e894902ddeb879e73f05de1 261 SMART SM00346 22 111 8.1E-7 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RAM_40340 946ad0b90e894902ddeb879e73f05de1 261 Pfam PF09339 IclR helix-turn-helix domain 27 72 1.7E-7 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RAM_40340 946ad0b90e894902ddeb879e73f05de1 261 Gene3D G3DSA:1.10.10.10 21 91 1.9E-11 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_09235 2adc29f7738401e1c69db156e776dc8b 126 Pfam PF04255 Protein of unknown function (DUF433) 68 117 2.6E-7 T 13-10-2018 IPR007367 Protein of unknown function DUF433 RAM_24280 2b44d00cf2fc7b0c40a67d7dcfe785bd 612 SUPERFAMILY SSF47336 530 596 4.32E-15 T 13-10-2018 IPR036736 ACP-like superfamily RAM_24280 2b44d00cf2fc7b0c40a67d7dcfe785bd 612 Gene3D G3DSA:1.10.1200.10 521 603 1.7E-21 T 13-10-2018 IPR036736 ACP-like superfamily RAM_24280 2b44d00cf2fc7b0c40a67d7dcfe785bd 612 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 39 450 1.5E-120 T 13-10-2018 IPR010071 Amino acid adenylation domain RAM_24280 2b44d00cf2fc7b0c40a67d7dcfe785bd 612 Pfam PF00550 Phosphopantetheine attachment site 535 595 1.4E-11 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_24280 2b44d00cf2fc7b0c40a67d7dcfe785bd 612 Gene3D G3DSA:3.40.50.12780 5 420 1.1E-122 T 13-10-2018 RAM_24280 2b44d00cf2fc7b0c40a67d7dcfe785bd 612 SUPERFAMILY SSF56801 10 545 2.35E-146 T 13-10-2018 RAM_24280 2b44d00cf2fc7b0c40a67d7dcfe785bd 612 Pfam PF00501 AMP-binding enzyme 17 426 7.8E-89 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_24280 2b44d00cf2fc7b0c40a67d7dcfe785bd 612 ProSitePatterns PS00455 Putative AMP-binding domain signature. 162 173 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_24280 2b44d00cf2fc7b0c40a67d7dcfe785bd 612 ProSitePatterns PS00012 Phosphopantetheine attachment site. 557 572 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_24280 2b44d00cf2fc7b0c40a67d7dcfe785bd 612 Gene3D G3DSA:3.30.300.30 421 520 1.3E-36 T 13-10-2018 RAM_24280 2b44d00cf2fc7b0c40a67d7dcfe785bd 612 Pfam PF13193 AMP-binding enzyme C-terminal domain 434 509 3.0E-17 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_24280 2b44d00cf2fc7b0c40a67d7dcfe785bd 612 SMART SM00823 Phosphopantetheine attachment site 533 602 0.0064 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_00350 cbb0a98c4fdbde9d66d29dbf98eea940 243 SMART SM00382 23 211 4.9E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_00350 cbb0a98c4fdbde9d66d29dbf98eea940 243 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_00350 cbb0a98c4fdbde9d66d29dbf98eea940 243 Pfam PF00005 ABC transporter 15 162 6.0E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_00350 cbb0a98c4fdbde9d66d29dbf98eea940 243 Gene3D G3DSA:3.40.50.300 1 243 5.1E-76 T 13-10-2018 RAM_00350 cbb0a98c4fdbde9d66d29dbf98eea940 243 SUPERFAMILY SSF52540 11 233 4.11E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_20900 d6ca335a9d4fec4109f3833d1c20b175 558 SUPERFAMILY SSF53474 78 463 9.45E-17 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_20900 d6ca335a9d4fec4109f3833d1c20b175 558 Pfam PF00561 alpha/beta hydrolase fold 82 361 4.2E-20 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_20900 d6ca335a9d4fec4109f3833d1c20b175 558 Pfam PF08386 TAP-like protein 411 497 5.9E-13 T 13-10-2018 IPR013595 Peptidase S33 tripeptidyl aminopeptidase-like, C-terminal RAM_45420 c3ac2ed2e5ace2e34fdad54bd345f49a 98 Pfam PF02467 Transcription factor WhiB 8 70 5.9E-23 T 13-10-2018 IPR034768 WhiB-like iron-sulfur binding domain RAM_45420 c3ac2ed2e5ace2e34fdad54bd345f49a 98 Hamap MF_01479 Transcriptional regulator WhiB [whiB]. 1 75 17.878 T 13-10-2018 IPR003482 Transcription factor WhiB RAM_17115 1feb9dbacd1ffe8f7b81281a611892e7 461 Pfam PF07690 Major Facilitator Superfamily 9 392 1.8E-41 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_17115 1feb9dbacd1ffe8f7b81281a611892e7 461 Gene3D G3DSA:1.20.1250.20 240 446 8.7E-14 T 13-10-2018 RAM_17115 1feb9dbacd1ffe8f7b81281a611892e7 461 SUPERFAMILY SSF103473 3 444 3.14E-58 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_17115 1feb9dbacd1ffe8f7b81281a611892e7 461 PRINTS PR01036 Tetracycline resistance protein TetB signature 129 153 1.4E-5 T 13-10-2018 RAM_17115 1feb9dbacd1ffe8f7b81281a611892e7 461 PRINTS PR01036 Tetracycline resistance protein TetB signature 8 32 1.4E-5 T 13-10-2018 RAM_17115 1feb9dbacd1ffe8f7b81281a611892e7 461 PRINTS PR01036 Tetracycline resistance protein TetB signature 99 119 1.4E-5 T 13-10-2018 RAM_17115 1feb9dbacd1ffe8f7b81281a611892e7 461 PRINTS PR01036 Tetracycline resistance protein TetB signature 154 178 1.4E-5 T 13-10-2018 RAM_17115 1feb9dbacd1ffe8f7b81281a611892e7 461 PRINTS PR01036 Tetracycline resistance protein TetB signature 383 402 1.4E-5 T 13-10-2018 RAM_17115 1feb9dbacd1ffe8f7b81281a611892e7 461 Gene3D G3DSA:1.20.1720.10 5 211 2.0E-37 T 13-10-2018 RAM_17115 1feb9dbacd1ffe8f7b81281a611892e7 461 ProSitePatterns PS00216 Sugar transport proteins signature 1. 59 75 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RAM_30285 f9e9541c5c5580dcec0fac9978b01e98 411 Pfam PF13560 Helix-turn-helix domain 10 66 5.5E-14 T 13-10-2018 RAM_30285 f9e9541c5c5580dcec0fac9978b01e98 411 SMART SM00530 13 69 1.1E-8 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_30285 f9e9541c5c5580dcec0fac9978b01e98 411 Gene3D G3DSA:1.10.260.40 7 73 1.4E-15 T 13-10-2018 RAM_30285 f9e9541c5c5580dcec0fac9978b01e98 411 SUPERFAMILY SSF47413 8 72 7.35E-15 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_19580 3c5e352ff47077d24dede7c9d8fc77d1 297 Pfam PF13622 Thioesterase-like superfamily 42 292 3.2E-63 T 13-10-2018 RAM_19580 3c5e352ff47077d24dede7c9d8fc77d1 297 SUPERFAMILY SSF54637 133 293 3.57E-47 T 13-10-2018 IPR029069 HotDog domain superfamily RAM_19580 3c5e352ff47077d24dede7c9d8fc77d1 297 Gene3D G3DSA:3.10.129.90 19 295 1.7E-100 T 13-10-2018 RAM_19580 3c5e352ff47077d24dede7c9d8fc77d1 297 SUPERFAMILY SSF54637 26 130 5.47E-38 T 13-10-2018 IPR029069 HotDog domain superfamily RAM_46695 6eb32f3ec00d9abf7430fe7cc5fc417b 387 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 208 378 4.0E-51 T 13-10-2018 IPR000160 GGDEF domain RAM_46695 6eb32f3ec00d9abf7430fe7cc5fc417b 387 SMART SM00267 201 379 4.1E-57 T 13-10-2018 IPR000160 GGDEF domain RAM_46695 6eb32f3ec00d9abf7430fe7cc5fc417b 387 Pfam PF00990 Diguanylate cyclase, GGDEF domain 212 375 4.8E-44 T 13-10-2018 IPR000160 GGDEF domain RAM_46695 6eb32f3ec00d9abf7430fe7cc5fc417b 387 SUPERFAMILY SSF55073 218 377 6.43E-46 T 13-10-2018 IPR029787 Nucleotide cyclase RAM_46695 6eb32f3ec00d9abf7430fe7cc5fc417b 387 Gene3D G3DSA:3.30.70.270 206 381 7.9E-56 T 13-10-2018 RAM_09620 be58e5126207e7b0a3024f2c81fb17d4 845 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 728 833 1.3E-16 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_09620 be58e5126207e7b0a3024f2c81fb17d4 845 SUPERFAMILY SSF52402 241 362 5.58E-13 T 13-10-2018 RAM_09620 be58e5126207e7b0a3024f2c81fb17d4 845 SUPERFAMILY SSF55874 675 837 1.2E-31 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_09620 be58e5126207e7b0a3024f2c81fb17d4 845 SMART SM00387 727 836 4.0E-24 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_09620 be58e5126207e7b0a3024f2c81fb17d4 845 Pfam PF13493 Domain of unknown function (DUF4118) 391 495 2.0E-26 T 13-10-2018 IPR025201 Sensor protein KdpD, transmembrane domain RAM_09620 be58e5126207e7b0a3024f2c81fb17d4 845 Gene3D G3DSA:3.30.565.10 695 838 8.5E-29 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_09620 be58e5126207e7b0a3024f2c81fb17d4 845 Gene3D G3DSA:3.40.50.620 226 362 2.4E-9 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAM_09620 be58e5126207e7b0a3024f2c81fb17d4 845 PRINTS PR00344 Bacterial sensor protein C-terminal signature 762 776 2.2E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_09620 be58e5126207e7b0a3024f2c81fb17d4 845 PRINTS PR00344 Bacterial sensor protein C-terminal signature 820 833 2.2E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_09620 be58e5126207e7b0a3024f2c81fb17d4 845 PRINTS PR00344 Bacterial sensor protein C-terminal signature 796 814 2.2E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_09620 be58e5126207e7b0a3024f2c81fb17d4 845 Gene3D G3DSA:1.20.120.620 385 489 1.4E-18 T 13-10-2018 IPR038318 KdpD, transmembrane domain superfamily RAM_09620 be58e5126207e7b0a3024f2c81fb17d4 845 Pfam PF02702 Osmosensitive K+ channel His kinase sensor domain 11 220 3.2E-98 T 13-10-2018 IPR003852 Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal GO:0000155|GO:0000160|GO:0004673|GO:0016020 RAM_09620 be58e5126207e7b0a3024f2c81fb17d4 845 SMART SM00388 618 686 6.5E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_09620 be58e5126207e7b0a3024f2c81fb17d4 845 Pfam PF00512 His Kinase A (phospho-acceptor) domain 619 685 2.7E-11 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_09620 be58e5126207e7b0a3024f2c81fb17d4 845 Pfam PF00582 Universal stress protein family 241 362 8.9E-6 T 13-10-2018 IPR006016 UspA RAM_09620 be58e5126207e7b0a3024f2c81fb17d4 845 SUPERFAMILY SSF47384 607 686 9.81E-15 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RAM_09620 be58e5126207e7b0a3024f2c81fb17d4 845 Gene3D G3DSA:1.10.287.130 588 684 6.2E-15 T 13-10-2018 RAM_09620 be58e5126207e7b0a3024f2c81fb17d4 845 Gene3D G3DSA:3.40.50.300 10 219 2.0E-99 T 13-10-2018 RAM_04585 e5cdb905099aa5b1d0befd51c57a4058 429 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 10 416 2.2E-101 T 13-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 RAM_04585 e5cdb905099aa5b1d0befd51c57a4058 429 SUPERFAMILY SSF52954 334 427 4.68E-19 T 13-10-2018 RAM_04585 e5cdb905099aa5b1d0befd51c57a4058 429 Pfam PF03129 Anticodon binding domain 337 426 7.2E-16 T 13-10-2018 IPR004154 Anticodon-binding RAM_04585 e5cdb905099aa5b1d0befd51c57a4058 429 PIRSF PIRSF001549 5 428 7.5E-107 T 13-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 RAM_04585 e5cdb905099aa5b1d0befd51c57a4058 429 Pfam PF13393 Histidyl-tRNA synthetase 12 314 1.0E-42 T 13-10-2018 RAM_04585 e5cdb905099aa5b1d0befd51c57a4058 429 SUPERFAMILY SSF55681 10 319 2.79E-64 T 13-10-2018 RAM_04585 e5cdb905099aa5b1d0befd51c57a4058 429 Gene3D G3DSA:3.30.930.10 5 326 2.4E-86 T 13-10-2018 RAM_04585 e5cdb905099aa5b1d0befd51c57a4058 429 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 5 426 24.375 T 13-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 RAM_04585 e5cdb905099aa5b1d0befd51c57a4058 429 Gene3D G3DSA:3.40.50.800 329 424 1.8E-20 T 13-10-2018 IPR036621 Anticodon-binding domain superfamily RAM_33335 ae04bca1e8b68ca6e0ba2027cfb497ca 462 Gene3D G3DSA:2.40.40.10 351 460 1.4E-5 T 13-10-2018 IPR036908 RlpA-like domain superfamily RAM_33335 ae04bca1e8b68ca6e0ba2027cfb497ca 462 ProDom PD068376 ORF2 SECRETED GLNII PRECURSOR SIGNAL 384 462 2.0E-23 T 13-10-2018 RAM_33335 ae04bca1e8b68ca6e0ba2027cfb497ca 462 ProDom PD068376 ORF2 SECRETED GLNII PRECURSOR SIGNAL 1 89 2.0E-10 T 13-10-2018 RAM_38500 13af73a9288d34984e53e6e7266d2307 199 Gene3D G3DSA:1.10.357.10 4 189 2.9E-5 T 13-10-2018 RAM_38500 13af73a9288d34984e53e6e7266d2307 199 SUPERFAMILY SSF46689 5 62 2.64E-5 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_24025 a6a58bc1657fbdfdd2f3d79e564ef4eb 114 SUPERFAMILY SSF46785 8 100 3.25E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_24025 a6a58bc1657fbdfdd2f3d79e564ef4eb 114 Pfam PF12840 Helix-turn-helix domain 8 62 9.8E-11 T 13-10-2018 RAM_24025 a6a58bc1657fbdfdd2f3d79e564ef4eb 114 SMART SM00418 8 87 6.0E-15 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_24025 a6a58bc1657fbdfdd2f3d79e564ef4eb 114 Gene3D G3DSA:1.10.10.10 5 110 6.3E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_24025 a6a58bc1657fbdfdd2f3d79e564ef4eb 114 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 58 73 1.8E-5 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_24025 a6a58bc1657fbdfdd2f3d79e564ef4eb 114 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 43 58 1.8E-5 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_24025 a6a58bc1657fbdfdd2f3d79e564ef4eb 114 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 10 25 1.8E-5 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_18795 e1453c515f7ae790d198180d9d5680cc 230 Pfam PF00072 Response regulator receiver domain 8 117 9.2E-30 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_18795 e1453c515f7ae790d198180d9d5680cc 230 Gene3D G3DSA:1.10.10.10 132 230 4.5E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_18795 e1453c515f7ae790d198180d9d5680cc 230 SMART SM00448 6 117 8.7E-44 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_18795 e1453c515f7ae790d198180d9d5680cc 230 SUPERFAMILY SSF52172 6 184 1.15E-43 T 13-10-2018 IPR011006 CheY-like superfamily RAM_18795 e1453c515f7ae790d198180d9d5680cc 230 SMART SM00862 152 227 5.5E-25 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_18795 e1453c515f7ae790d198180d9d5680cc 230 Gene3D G3DSA:3.40.50.2300 2 131 4.5E-38 T 13-10-2018 RAM_18795 e1453c515f7ae790d198180d9d5680cc 230 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 226 6.0E-25 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_05975 b81d73c22caac71541b0f1e023ff6821 941 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 907 919 1.9E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_05975 b81d73c22caac71541b0f1e023ff6821 941 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 877 891 1.9E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_05975 b81d73c22caac71541b0f1e023ff6821 941 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 891 907 1.9E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_05975 b81d73c22caac71541b0f1e023ff6821 941 Pfam PF13191 AAA ATPase domain 23 174 1.1E-12 T 13-10-2018 RAM_05975 b81d73c22caac71541b0f1e023ff6821 941 Pfam PF00196 Bacterial regulatory proteins, luxR family 877 927 1.5E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_05975 b81d73c22caac71541b0f1e023ff6821 941 SUPERFAMILY SSF52540 20 238 1.01E-6 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_05975 b81d73c22caac71541b0f1e023ff6821 941 SMART SM00421 874 931 4.7E-16 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_05975 b81d73c22caac71541b0f1e023ff6821 941 SUPERFAMILY SSF46894 865 927 1.29E-14 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_05975 b81d73c22caac71541b0f1e023ff6821 941 Gene3D G3DSA:1.25.40.10 742 873 9.1E-11 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_05975 b81d73c22caac71541b0f1e023ff6821 941 SUPERFAMILY SSF48452 742 854 4.51E-9 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_05975 b81d73c22caac71541b0f1e023ff6821 941 Gene3D G3DSA:1.10.10.10 874 938 1.2E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_37935 749139fa7171250502157ef6265d494e 739 Gene3D G3DSA:3.20.20.300 30 370 7.0E-122 T 13-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 RAM_37935 749139fa7171250502157ef6265d494e 739 Gene3D G3DSA:2.60.40.10 634 738 1.5E-34 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_37935 749139fa7171250502157ef6265d494e 739 Pfam PF14310 Fibronectin type III-like domain 659 728 2.3E-25 T 13-10-2018 IPR026891 Fibronectin type III-like domain RAM_37935 749139fa7171250502157ef6265d494e 739 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 387 621 7.8E-57 T 13-10-2018 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 RAM_37935 749139fa7171250502157ef6265d494e 739 SUPERFAMILY SSF52279 387 624 3.79E-57 T 13-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 RAM_37935 749139fa7171250502157ef6265d494e 739 SUPERFAMILY SSF51445 32 385 1.16E-104 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_37935 749139fa7171250502157ef6265d494e 739 SMART SM01217 659 728 3.7E-34 T 13-10-2018 IPR026891 Fibronectin type III-like domain RAM_37935 749139fa7171250502157ef6265d494e 739 Gene3D G3DSA:3.40.50.1700 374 623 2.3E-81 T 13-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 RAM_37935 749139fa7171250502157ef6265d494e 739 PRINTS PR00133 Glycosyl hydrolase family 3 signature 99 115 2.0E-20 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_37935 749139fa7171250502157ef6265d494e 739 PRINTS PR00133 Glycosyl hydrolase family 3 signature 164 180 2.0E-20 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_37935 749139fa7171250502157ef6265d494e 739 PRINTS PR00133 Glycosyl hydrolase family 3 signature 118 137 2.0E-20 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_37935 749139fa7171250502157ef6265d494e 739 PRINTS PR00133 Glycosyl hydrolase family 3 signature 271 289 2.0E-20 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_37935 749139fa7171250502157ef6265d494e 739 PRINTS PR00133 Glycosyl hydrolase family 3 signature 201 217 2.0E-20 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_37935 749139fa7171250502157ef6265d494e 739 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 49 348 1.7E-74 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_18345 e06cd0ec8b56f3cf82dc4d8e67e29b3c 185 SUPERFAMILY SSF48498 85 185 2.29E-14 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_18345 e06cd0ec8b56f3cf82dc4d8e67e29b3c 185 Gene3D G3DSA:1.10.357.10 1 185 2.3E-47 T 13-10-2018 RAM_18345 e06cd0ec8b56f3cf82dc4d8e67e29b3c 185 Pfam PF00440 Bacterial regulatory proteins, tetR family 32 65 1.8E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_18345 e06cd0ec8b56f3cf82dc4d8e67e29b3c 185 SUPERFAMILY SSF46689 7 83 6.48E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_22200 b26eb3392cd04e7a1acebdcf0299b78f 213 Pfam PF00440 Bacterial regulatory proteins, tetR family 21 67 4.0E-14 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_22200 b26eb3392cd04e7a1acebdcf0299b78f 213 Gene3D G3DSA:1.10.357.10 17 213 4.3E-64 T 13-10-2018 RAM_22200 b26eb3392cd04e7a1acebdcf0299b78f 213 SUPERFAMILY SSF46689 10 93 2.51E-20 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_22200 b26eb3392cd04e7a1acebdcf0299b78f 213 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 21 34 6.1E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_22200 b26eb3392cd04e7a1acebdcf0299b78f 213 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 42 65 6.1E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_22200 b26eb3392cd04e7a1acebdcf0299b78f 213 SUPERFAMILY SSF48498 87 212 6.55E-34 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_10385 053806a522b7f36d4e4e276ac9feb4d3 285 Hamap MF_01974 Methionine aminopeptidase [map]. 39 285 39.869 T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 RAM_10385 053806a522b7f36d4e4e276ac9feb4d3 285 PRINTS PR00599 Methionine aminopeptidase-1 signature 227 239 8.1E-21 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 RAM_10385 053806a522b7f36d4e4e276ac9feb4d3 285 PRINTS PR00599 Methionine aminopeptidase-1 signature 126 142 8.1E-21 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 RAM_10385 053806a522b7f36d4e4e276ac9feb4d3 285 PRINTS PR00599 Methionine aminopeptidase-1 signature 104 117 8.1E-21 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 RAM_10385 053806a522b7f36d4e4e276ac9feb4d3 285 PRINTS PR00599 Methionine aminopeptidase-1 signature 196 208 8.1E-21 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 RAM_10385 053806a522b7f36d4e4e276ac9feb4d3 285 Pfam PF00557 Metallopeptidase family M24 48 276 9.3E-52 T 13-10-2018 IPR000994 Peptidase M24 RAM_10385 053806a522b7f36d4e4e276ac9feb4d3 285 SUPERFAMILY SSF55920 7 284 9.94E-86 T 13-10-2018 IPR036005 Creatinase/aminopeptidase-like RAM_10385 053806a522b7f36d4e4e276ac9feb4d3 285 Gene3D G3DSA:3.90.230.10 4 285 3.0E-114 T 13-10-2018 RAM_10385 053806a522b7f36d4e4e276ac9feb4d3 285 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 42 283 7.4E-89 T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 RAM_10385 053806a522b7f36d4e4e276ac9feb4d3 285 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 202 220 - T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 RAM_22155 0f846bb28c7e161d3e8f203e957f89dd 443 SUPERFAMILY SSF48264 3 441 7.2E-103 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_22155 0f846bb28c7e161d3e8f203e957f89dd 443 PRINTS PR00463 E-class P450 group I signature 31 50 4.7E-22 T 13-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_22155 0f846bb28c7e161d3e8f203e957f89dd 443 PRINTS PR00463 E-class P450 group I signature 380 390 4.7E-22 T 13-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_22155 0f846bb28c7e161d3e8f203e957f89dd 443 PRINTS PR00463 E-class P450 group I signature 345 369 4.7E-22 T 13-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_22155 0f846bb28c7e161d3e8f203e957f89dd 443 PRINTS PR00463 E-class P450 group I signature 390 413 4.7E-22 T 13-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_22155 0f846bb28c7e161d3e8f203e957f89dd 443 PRINTS PR00463 E-class P450 group I signature 264 290 4.7E-22 T 13-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_22155 0f846bb28c7e161d3e8f203e957f89dd 443 PRINTS PR00463 E-class P450 group I signature 244 261 4.7E-22 T 13-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_22155 0f846bb28c7e161d3e8f203e957f89dd 443 Pfam PF00067 Cytochrome P450 7 421 6.8E-72 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_22155 0f846bb28c7e161d3e8f203e957f89dd 443 Gene3D G3DSA:1.10.630.10 3 443 2.8E-121 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_22155 0f846bb28c7e161d3e8f203e957f89dd 443 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 383 392 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RAM_22155 0f846bb28c7e161d3e8f203e957f89dd 443 PRINTS PR00385 P450 superfamily signature 381 390 1.8E-8 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_22155 0f846bb28c7e161d3e8f203e957f89dd 443 PRINTS PR00385 P450 superfamily signature 255 272 1.8E-8 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_22155 0f846bb28c7e161d3e8f203e957f89dd 443 PRINTS PR00385 P450 superfamily signature 390 401 1.8E-8 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_22155 0f846bb28c7e161d3e8f203e957f89dd 443 PRINTS PR00385 P450 superfamily signature 307 318 1.8E-8 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_36750 8619aea662b14fb5a5847915374eeada 239 SUPERFAMILY SSF52540 9 227 1.92E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_36750 8619aea662b14fb5a5847915374eeada 239 Pfam PF00005 ABC transporter 24 158 1.4E-25 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_36750 8619aea662b14fb5a5847915374eeada 239 SMART SM00382 30 232 4.1E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_36750 8619aea662b14fb5a5847915374eeada 239 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_36750 8619aea662b14fb5a5847915374eeada 239 Gene3D G3DSA:3.40.50.300 3 235 2.1E-48 T 13-10-2018 RAM_01375 b7395cd82f36391c68858426fb94d362 358 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 5 350 50.549 T 13-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 RAM_01375 b7395cd82f36391c68858426fb94d362 358 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 214 223 - T 13-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 RAM_01375 b7395cd82f36391c68858426fb94d362 358 SUPERFAMILY SSF53383 19 349 6.66E-80 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_01375 b7395cd82f36391c68858426fb94d362 358 Pfam PF00155 Aminotransferase class I and II 26 342 1.9E-48 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RAM_01375 b7395cd82f36391c68858426fb94d362 358 Gene3D G3DSA:3.90.1150.10 11 343 7.4E-128 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_01375 b7395cd82f36391c68858426fb94d362 358 Gene3D G3DSA:3.40.640.10 37 262 7.4E-128 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_01375 b7395cd82f36391c68858426fb94d362 358 Hamap MF_01513 Putative phenylalanine aminotransferase [pat]. 6 351 47.651 T 13-10-2018 IPR024892 Putative phenylalanine aminotransferase RAM_01375 b7395cd82f36391c68858426fb94d362 358 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 7 348 6.2E-90 T 13-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 RAM_30220 0401d24b787153c680db0a2d9531a24a 1361 Gene3D G3DSA:3.30.450.20 740 872 6.8E-16 T 13-10-2018 RAM_30220 0401d24b787153c680db0a2d9531a24a 1361 Gene3D G3DSA:3.60.40.10 1021 1233 1.9E-54 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_30220 0401d24b787153c680db0a2d9531a24a 1361 Pfam PF13581 Histidine kinase-like ATPase domain 1241 1357 8.2E-24 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_30220 0401d24b787153c680db0a2d9531a24a 1361 SMART SM00331 1017 1232 9.7E-35 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_30220 0401d24b787153c680db0a2d9531a24a 1361 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 1047 1232 4.3E-42 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_30220 0401d24b787153c680db0a2d9531a24a 1361 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 737 858 3.9E-11 T 13-10-2018 IPR000014 PAS domain RAM_30220 0401d24b787153c680db0a2d9531a24a 1361 PRINTS PR00344 Bacterial sensor protein C-terminal signature 502 512 1.7E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_30220 0401d24b787153c680db0a2d9531a24a 1361 PRINTS PR00344 Bacterial sensor protein C-terminal signature 484 498 1.7E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_30220 0401d24b787153c680db0a2d9531a24a 1361 PRINTS PR00344 Bacterial sensor protein C-terminal signature 543 556 1.7E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_30220 0401d24b787153c680db0a2d9531a24a 1361 PRINTS PR00344 Bacterial sensor protein C-terminal signature 519 537 1.7E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_30220 0401d24b787153c680db0a2d9531a24a 1361 Pfam PF08448 PAS fold 745 856 3.5E-9 T 13-10-2018 IPR013656 PAS fold-4 RAM_30220 0401d24b787153c680db0a2d9531a24a 1361 Pfam PF08448 PAS fold 57 161 7.0E-7 T 13-10-2018 IPR013656 PAS fold-4 RAM_30220 0401d24b787153c680db0a2d9531a24a 1361 SUPERFAMILY SSF55874 391 557 1.44E-45 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_30220 0401d24b787153c680db0a2d9531a24a 1361 SUPERFAMILY SSF55874 1264 1356 9.79E-6 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_30220 0401d24b787153c680db0a2d9531a24a 1361 SUPERFAMILY SSF47384 320 403 9.22E-20 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RAM_30220 0401d24b787153c680db0a2d9531a24a 1361 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 454 558 7.8E-25 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_30220 0401d24b787153c680db0a2d9531a24a 1361 SUPERFAMILY SSF55781 185 326 2.7E-5 T 13-10-2018 RAM_30220 0401d24b787153c680db0a2d9531a24a 1361 Gene3D G3DSA:3.30.565.10 404 561 1.9E-43 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_30220 0401d24b787153c680db0a2d9531a24a 1361 Pfam PF00072 Response regulator receiver domain 613 723 1.2E-23 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_30220 0401d24b787153c680db0a2d9531a24a 1361 Gene3D G3DSA:3.30.450.20 46 172 6.0E-18 T 13-10-2018 RAM_30220 0401d24b787153c680db0a2d9531a24a 1361 SUPERFAMILY SSF55785 731 853 2.09E-17 T 13-10-2018 IPR035965 PAS domain superfamily RAM_30220 0401d24b787153c680db0a2d9531a24a 1361 Gene3D G3DSA:3.40.50.2300 602 739 5.1E-35 T 13-10-2018 RAM_30220 0401d24b787153c680db0a2d9531a24a 1361 SMART SM00388 335 402 2.2E-20 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_30220 0401d24b787153c680db0a2d9531a24a 1361 SMART SM00387 448 559 1.2E-33 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_30220 0401d24b787153c680db0a2d9531a24a 1361 SUPERFAMILY SSF52172 610 740 2.42E-36 T 13-10-2018 IPR011006 CheY-like superfamily RAM_30220 0401d24b787153c680db0a2d9531a24a 1361 SMART SM00091 738 805 0.0014 T 13-10-2018 IPR000014 PAS domain RAM_30220 0401d24b787153c680db0a2d9531a24a 1361 Gene3D G3DSA:1.10.287.130 322 403 2.9E-23 T 13-10-2018 RAM_30220 0401d24b787153c680db0a2d9531a24a 1361 Gene3D G3DSA:3.30.565.10 1234 1361 1.9E-31 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_30220 0401d24b787153c680db0a2d9531a24a 1361 Pfam PF00512 His Kinase A (phospho-acceptor) domain 335 402 3.5E-18 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_30220 0401d24b787153c680db0a2d9531a24a 1361 SMART SM00448 611 723 8.6E-37 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_34440 ea167370a61986b1d5cde2f2ad9eadb5 136 PRINTS PR01243 Nucleoside diphosphate kinase signature 69 86 1.1E-41 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RAM_34440 ea167370a61986b1d5cde2f2ad9eadb5 136 PRINTS PR01243 Nucleoside diphosphate kinase signature 5 27 1.1E-41 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RAM_34440 ea167370a61986b1d5cde2f2ad9eadb5 136 PRINTS PR01243 Nucleoside diphosphate kinase signature 91 107 1.1E-41 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RAM_34440 ea167370a61986b1d5cde2f2ad9eadb5 136 PRINTS PR01243 Nucleoside diphosphate kinase signature 114 133 1.1E-41 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RAM_34440 ea167370a61986b1d5cde2f2ad9eadb5 136 PRINTS PR01243 Nucleoside diphosphate kinase signature 49 68 1.1E-41 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RAM_34440 ea167370a61986b1d5cde2f2ad9eadb5 136 SUPERFAMILY SSF54919 2 135 3.14E-53 T 13-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RAM_34440 ea167370a61986b1d5cde2f2ad9eadb5 136 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 114 122 - T 13-10-2018 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RAM_34440 ea167370a61986b1d5cde2f2ad9eadb5 136 Gene3D G3DSA:3.30.70.141 1 136 1.9E-55 T 13-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RAM_34440 ea167370a61986b1d5cde2f2ad9eadb5 136 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 2 136 33.709 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RAM_34440 ea167370a61986b1d5cde2f2ad9eadb5 136 SMART SM00562 2 136 5.7E-74 T 13-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RAM_34440 ea167370a61986b1d5cde2f2ad9eadb5 136 Pfam PF00334 Nucleoside diphosphate kinase 3 135 6.7E-52 T 13-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RAM_13390 c683f30ce7cc197d2c254d8eebdcfca1 1116 SMART SM00878 267 371 2.3E-42 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RAM_13390 c683f30ce7cc197d2c254d8eebdcfca1 1116 SMART SM00797 402 690 2.3E-147 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B RAM_13390 c683f30ce7cc197d2c254d8eebdcfca1 1116 Pfam PF02785 Biotin carboxylase C-terminal domain 267 371 4.1E-29 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RAM_13390 c683f30ce7cc197d2c254d8eebdcfca1 1116 TIGRFAM TIGR02712 urea_carbox: urea carboxylase 2 1115 0.0 T 13-10-2018 IPR014084 Urea carboxylase KEGG: 00220+3.5.1.54+6.3.4.6|KEGG: 00791+3.5.1.54+6.3.4.6|MetaCyc: PWY-5169|MetaCyc: PWY-5703 RAM_13390 c683f30ce7cc197d2c254d8eebdcfca1 1116 SUPERFAMILY SSF56059 15 277 1.45E-63 T 13-10-2018 RAM_13390 c683f30ce7cc197d2c254d8eebdcfca1 1116 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 48 251 1.2E-60 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RAM_13390 c683f30ce7cc197d2c254d8eebdcfca1 1116 Gene3D G3DSA:2.40.50.100 1038 1116 8.7E-21 T 13-10-2018 RAM_13390 c683f30ce7cc197d2c254d8eebdcfca1 1116 SUPERFAMILY SSF51230 1040 1115 3.4E-18 T 13-10-2018 IPR011053 Single hybrid motif RAM_13390 c683f30ce7cc197d2c254d8eebdcfca1 1116 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 380 687 5.1E-79 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B RAM_13390 c683f30ce7cc197d2c254d8eebdcfca1 1116 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 84 98 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RAM_13390 c683f30ce7cc197d2c254d8eebdcfca1 1116 SMART SM00796 722 950 3.6E-114 T 13-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D RAM_13390 c683f30ce7cc197d2c254d8eebdcfca1 1116 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 218 225 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RAM_13390 c683f30ce7cc197d2c254d8eebdcfca1 1116 Pfam PF00364 Biotin-requiring enzyme 1041 1115 7.3E-15 T 13-10-2018 IPR000089 Biotin/lipoyl attachment RAM_13390 c683f30ce7cc197d2c254d8eebdcfca1 1116 SUPERFAMILY SSF160467 723 815 1.83E-17 T 13-10-2018 RAM_13390 c683f30ce7cc197d2c254d8eebdcfca1 1116 Gene3D G3DSA:2.40.100.10 554 700 3.8E-53 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily RAM_13390 c683f30ce7cc197d2c254d8eebdcfca1 1116 Gene3D G3DSA:2.40.100.10 805 1022 2.6E-91 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily RAM_13390 c683f30ce7cc197d2c254d8eebdcfca1 1116 SUPERFAMILY SSF50891 555 679 4.55E-29 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily RAM_13390 c683f30ce7cc197d2c254d8eebdcfca1 1116 SUPERFAMILY SSF50891 839 966 6.45E-25 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily RAM_13390 c683f30ce7cc197d2c254d8eebdcfca1 1116 Pfam PF02682 Carboxyltransferase domain, subdomain C and D 723 940 1.2E-48 T 13-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D RAM_13390 c683f30ce7cc197d2c254d8eebdcfca1 1116 Pfam PF02626 Carboxyltransferase domain, subdomain A and B 403 674 9.7E-84 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B RAM_13390 c683f30ce7cc197d2c254d8eebdcfca1 1116 Pfam PF00289 Biotin carboxylase, N-terminal domain 2 42 1.1E-13 T 13-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RAM_13390 c683f30ce7cc197d2c254d8eebdcfca1 1116 Gene3D G3DSA:3.30.1360.40 710 800 4.9E-25 T 13-10-2018 RAM_13390 c683f30ce7cc197d2c254d8eebdcfca1 1116 SUPERFAMILY SSF51246 262 373 2.98E-31 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 RAM_13390 c683f30ce7cc197d2c254d8eebdcfca1 1116 Gene3D G3DSA:3.30.470.130 1 376 2.2E-145 T 13-10-2018 RAM_05465 87d8c198428a1ac3a4a686712211f81b 293 PRINTS PR00721 Stomatin signature 26 48 4.5E-57 T 13-10-2018 IPR001972 Stomatin family GO:0016020 RAM_05465 87d8c198428a1ac3a4a686712211f81b 293 PRINTS PR00721 Stomatin signature 153 171 4.5E-57 T 13-10-2018 IPR001972 Stomatin family GO:0016020 RAM_05465 87d8c198428a1ac3a4a686712211f81b 293 PRINTS PR00721 Stomatin signature 74 95 4.5E-57 T 13-10-2018 IPR001972 Stomatin family GO:0016020 RAM_05465 87d8c198428a1ac3a4a686712211f81b 293 PRINTS PR00721 Stomatin signature 109 126 4.5E-57 T 13-10-2018 IPR001972 Stomatin family GO:0016020 RAM_05465 87d8c198428a1ac3a4a686712211f81b 293 PRINTS PR00721 Stomatin signature 172 193 4.5E-57 T 13-10-2018 IPR001972 Stomatin family GO:0016020 RAM_05465 87d8c198428a1ac3a4a686712211f81b 293 PRINTS PR00721 Stomatin signature 129 152 4.5E-57 T 13-10-2018 IPR001972 Stomatin family GO:0016020 RAM_05465 87d8c198428a1ac3a4a686712211f81b 293 PRINTS PR00721 Stomatin signature 197 220 4.5E-57 T 13-10-2018 IPR001972 Stomatin family GO:0016020 RAM_05465 87d8c198428a1ac3a4a686712211f81b 293 Gene3D G3DSA:3.30.479.30 48 179 2.4E-45 T 13-10-2018 RAM_05465 87d8c198428a1ac3a4a686712211f81b 293 Pfam PF01145 SPFH domain / Band 7 family 23 193 2.3E-32 T 13-10-2018 IPR001107 Band 7 domain RAM_05465 87d8c198428a1ac3a4a686712211f81b 293 SUPERFAMILY SSF117892 51 184 2.62E-40 T 13-10-2018 IPR036013 Band 7/SPFH domain superfamily RAM_05465 87d8c198428a1ac3a4a686712211f81b 293 SMART SM00244 19 177 4.0E-59 T 13-10-2018 IPR001107 Band 7 domain RAM_29320 6b7b47d7175cff914c537dd62d5bcf67 188 Gene3D G3DSA:2.20.25.90 40 99 4.0E-21 T 13-10-2018 RAM_29320 6b7b47d7175cff914c537dd62d5bcf67 188 SUPERFAMILY SSF53706 43 188 3.4E-43 T 13-10-2018 RAM_29320 6b7b47d7175cff914c537dd62d5bcf67 188 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 45 94 2.1E-20 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_29320 6b7b47d7175cff914c537dd62d5bcf67 188 Gene3D G3DSA:3.40.50.740 101 188 1.6E-24 T 13-10-2018 RAM_29320 6b7b47d7175cff914c537dd62d5bcf67 188 SMART SM00926 44 98 4.0E-22 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_10690 15d52a2190ac3abce962962e6d48facb 145 SUPERFAMILY SSF54593 2 142 7.01E-31 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_10690 15d52a2190ac3abce962962e6d48facb 145 Gene3D G3DSA:3.10.180.10 1 145 2.6E-53 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_10690 15d52a2190ac3abce962962e6d48facb 145 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 9 129 1.5E-9 T 13-10-2018 RAM_32165 ad2e3e10c17204649f61a4b2effbb42e 404 Gene3D G3DSA:3.30.1490.100 257 363 1.2E-25 T 13-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 RAM_32165 ad2e3e10c17204649f61a4b2effbb42e 404 Gene3D G3DSA:1.10.150.20 183 253 2.5E-21 T 13-10-2018 RAM_32165 ad2e3e10c17204649f61a4b2effbb42e 404 Hamap MF_01113 DNA polymerase IV [dinB]. 17 367 35.483 T 13-10-2018 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 RAM_32165 ad2e3e10c17204649f61a4b2effbb42e 404 Gene3D G3DSA:2.30.40.20 37 88 9.6E-57 T 13-10-2018 RAM_32165 ad2e3e10c17204649f61a4b2effbb42e 404 Pfam PF11799 impB/mucB/samB family C-terminal domain 253 363 9.8E-19 T 13-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 RAM_32165 ad2e3e10c17204649f61a4b2effbb42e 404 Gene3D G3DSA:3.30.70.270 21 180 9.6E-57 T 13-10-2018 RAM_32165 ad2e3e10c17204649f61a4b2effbb42e 404 SUPERFAMILY SSF56672 20 251 2.13E-80 T 13-10-2018 RAM_32165 ad2e3e10c17204649f61a4b2effbb42e 404 Pfam PF00817 impB/mucB/samB family 23 169 5.7E-46 T 13-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 RAM_32165 ad2e3e10c17204649f61a4b2effbb42e 404 SUPERFAMILY SSF100879 257 354 2.75E-26 T 13-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 RAM_32165 ad2e3e10c17204649f61a4b2effbb42e 404 Pfam PF11798 IMS family HHH motif 186 213 2.1E-6 T 13-10-2018 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 RAM_10315 d622d20c3199e1420f1623f230063b2a 484 SMART SM00345 34 93 6.5E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_10315 d622d20c3199e1420f1623f230063b2a 484 Gene3D G3DSA:3.40.640.10 120 474 4.8E-98 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_10315 d622d20c3199e1420f1623f230063b2a 484 Gene3D G3DSA:1.10.10.10 33 100 8.9E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_10315 d622d20c3199e1420f1623f230063b2a 484 SUPERFAMILY SSF53383 119 481 1.47E-71 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_10315 d622d20c3199e1420f1623f230063b2a 484 Pfam PF00392 Bacterial regulatory proteins, gntR family 34 93 6.7E-11 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_10315 d622d20c3199e1420f1623f230063b2a 484 Pfam PF00155 Aminotransferase class I and II 159 445 2.5E-11 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RAM_10315 d622d20c3199e1420f1623f230063b2a 484 SUPERFAMILY SSF46785 27 97 1.71E-14 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_07200 49d43b906f52d3bf2ec24449a5ed87ff 163 Gene3D G3DSA:3.30.1310.10 1 95 9.4E-8 T 13-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily RAM_07200 49d43b906f52d3bf2ec24449a5ed87ff 163 SUPERFAMILY SSF82607 4 88 1.02E-8 T 13-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily RAM_07200 49d43b906f52d3bf2ec24449a5ed87ff 163 Pfam PF02575 YbaB/EbfC DNA-binding family 3 87 1.6E-9 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family RAM_42135 dad29fc3adb85bb6e0816844de95e973 281 Pfam PF03239 Iron permease FTR1 family 2 256 1.1E-55 T 13-10-2018 IPR004923 Iron permease FTR1/Fip1/EfeU GO:0005381|GO:0016020|GO:0033573|GO:0034755 RAM_31620 00152ca679d0d12472f473a451f2a406 126 Pfam PF04686 Streptomyces sporulation and cell division protein, SsgA 17 109 7.9E-23 T 13-10-2018 IPR006776 Sporulation-specific cell division protein SsgB GO:0051301 RAM_31620 00152ca679d0d12472f473a451f2a406 126 Gene3D G3DSA:2.30.31.20 2 121 7.1E-28 T 13-10-2018 IPR038658 Sporulation-specific cell division protein SsgB superfamily RAM_30830 c39ac5607625f9f18f6aa458255c8151 175 Pfam PF05154 TM2 domain 108 158 2.2E-12 T 13-10-2018 IPR007829 TM2 domain RAM_30830 c39ac5607625f9f18f6aa458255c8151 175 Pfam PF08044 Domain of unknown function (DUF1707) 6 58 2.3E-20 T 13-10-2018 IPR012551 Protein of unknown function DUF1707 RAM_40045 536629af6454419a93d8018b812959d2 476 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 94 112 - T 13-10-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site RAM_40045 536629af6454419a93d8018b812959d2 476 Gene3D G3DSA:3.20.20.10 72 332 1.1E-162 T 13-10-2018 IPR029066 PLP-binding barrel RAM_40045 536629af6454419a93d8018b812959d2 476 SUPERFAMILY SSF51419 64 333 1.6E-71 T 13-10-2018 IPR029066 PLP-binding barrel RAM_40045 536629af6454419a93d8018b812959d2 476 SUPERFAMILY SSF50621 310 475 7.33E-47 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 RAM_40045 536629af6454419a93d8018b812959d2 476 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 45 476 8.3E-140 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RAM_40045 536629af6454419a93d8018b812959d2 476 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 73 331 9.6E-61 T 13-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 RAM_40045 536629af6454419a93d8018b812959d2 476 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 114 126 6.9E-17 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RAM_40045 536629af6454419a93d8018b812959d2 476 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 433 446 6.9E-17 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RAM_40045 536629af6454419a93d8018b812959d2 476 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 322 341 6.9E-17 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RAM_40045 536629af6454419a93d8018b812959d2 476 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 94 112 6.9E-17 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RAM_40045 536629af6454419a93d8018b812959d2 476 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 229 242 6.9E-17 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RAM_40045 536629af6454419a93d8018b812959d2 476 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 339 433 1.6E-14 T 13-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 RAM_40045 536629af6454419a93d8018b812959d2 476 PRINTS PR01181 Diaminopimelate decarboxylase signature 112 129 7.4E-27 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RAM_40045 536629af6454419a93d8018b812959d2 476 PRINTS PR01181 Diaminopimelate decarboxylase signature 355 373 7.4E-27 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RAM_40045 536629af6454419a93d8018b812959d2 476 PRINTS PR01181 Diaminopimelate decarboxylase signature 443 465 7.4E-27 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RAM_40045 536629af6454419a93d8018b812959d2 476 PRINTS PR01181 Diaminopimelate decarboxylase signature 201 210 7.4E-27 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RAM_40045 536629af6454419a93d8018b812959d2 476 Gene3D G3DSA:2.40.37.10 51 472 1.1E-162 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 RAM_40045 536629af6454419a93d8018b812959d2 476 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 53 476 38.655 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RAM_40045 536629af6454419a93d8018b812959d2 476 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 268 285 - T 13-10-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site RAM_04485 7d705e81f22d30cdcc0caa1ff8897193 189 Pfam PF01670 Glycosyl hydrolase family 12 50 187 2.5E-8 T 13-10-2018 IPR002594 Glycoside hydrolase family 12 GO:0000272|GO:0008810 RAM_04485 7d705e81f22d30cdcc0caa1ff8897193 189 SUPERFAMILY SSF49899 19 187 4.52E-23 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily RAM_04485 7d705e81f22d30cdcc0caa1ff8897193 189 Gene3D G3DSA:2.60.120.180 1 189 2.5E-33 T 13-10-2018 IPR013319 Glycoside hydrolase family 11/12 GO:0004553 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_13010 8a50511a1c7bdf7aef39c07b1eeba0d7 366 Pfam PF03060 Nitronate monooxygenase 16 353 7.9E-48 T 13-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 RAM_13010 8a50511a1c7bdf7aef39c07b1eeba0d7 366 Gene3D G3DSA:3.20.20.70 1 365 5.6E-95 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_13010 8a50511a1c7bdf7aef39c07b1eeba0d7 366 SUPERFAMILY SSF51412 2 361 1.33E-51 T 13-10-2018 RAM_41220 2fce773eade2ecc749562d7213ac4833 280 Gene3D G3DSA:3.40.50.10320 5 280 8.4E-96 T 13-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 RAM_41220 2fce773eade2ecc749562d7213ac4833 280 TIGRFAM TIGR03445 mycothiol_MshB: N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase 10 279 1.3E-98 T 13-10-2018 IPR017810 Mycothiol biosynthesis protein, MshB GO:0035595 RAM_41220 2fce773eade2ecc749562d7213ac4833 280 Pfam PF02585 GlcNAc-PI de-N-acetylase 10 162 3.0E-26 T 13-10-2018 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related Reactome: R-HSA-162710 RAM_41220 2fce773eade2ecc749562d7213ac4833 280 SUPERFAMILY SSF102588 7 267 2.49E-59 T 13-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 RAM_41220 2fce773eade2ecc749562d7213ac4833 280 Hamap MF_01696 1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase [mshB]. 9 280 38.441 T 13-10-2018 IPR017810 Mycothiol biosynthesis protein, MshB GO:0035595 RAM_36525 2c8c2bd7def2513ca0f826059191fed6 140 PRINTS PR00502 NUDIX hydrolase family signature 46 61 6.1E-9 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RAM_36525 2c8c2bd7def2513ca0f826059191fed6 140 PRINTS PR00502 NUDIX hydrolase family signature 32 46 6.1E-9 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RAM_36525 2c8c2bd7def2513ca0f826059191fed6 140 SUPERFAMILY SSF55811 9 133 5.82E-26 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RAM_36525 2c8c2bd7def2513ca0f826059191fed6 140 Gene3D G3DSA:3.90.79.10 4 135 2.2E-24 T 13-10-2018 RAM_36525 2c8c2bd7def2513ca0f826059191fed6 140 ProSitePatterns PS00893 Nudix box signature. 37 58 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RAM_36525 2c8c2bd7def2513ca0f826059191fed6 140 Pfam PF00293 NUDIX domain 14 113 1.6E-15 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RAM_43470 d6f3ec50f21fb6c70de3ef60c0afbf8e 382 SUPERFAMILY SSF55874 235 380 1.37E-26 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_43470 d6f3ec50f21fb6c70de3ef60c0afbf8e 382 Gene3D G3DSA:3.30.565.10 228 381 3.0E-26 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_43470 d6f3ec50f21fb6c70de3ef60c0afbf8e 382 SUPERFAMILY SSF158472 113 162 5.89E-9 T 13-10-2018 RAM_43470 d6f3ec50f21fb6c70de3ef60c0afbf8e 382 SUPERFAMILY SSF47384 148 231 3.34E-15 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RAM_43470 d6f3ec50f21fb6c70de3ef60c0afbf8e 382 Pfam PF00512 His Kinase A (phospho-acceptor) domain 165 231 3.2E-10 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_43470 d6f3ec50f21fb6c70de3ef60c0afbf8e 382 Pfam PF00672 HAMP domain 112 160 6.9E-10 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_43470 d6f3ec50f21fb6c70de3ef60c0afbf8e 382 PRINTS PR00344 Bacterial sensor protein C-terminal signature 367 380 1.9E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_43470 d6f3ec50f21fb6c70de3ef60c0afbf8e 382 PRINTS PR00344 Bacterial sensor protein C-terminal signature 343 361 1.9E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_43470 d6f3ec50f21fb6c70de3ef60c0afbf8e 382 PRINTS PR00344 Bacterial sensor protein C-terminal signature 307 321 1.9E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_43470 d6f3ec50f21fb6c70de3ef60c0afbf8e 382 PRINTS PR00344 Bacterial sensor protein C-terminal signature 325 335 1.9E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_43470 d6f3ec50f21fb6c70de3ef60c0afbf8e 382 SMART SM00388 165 231 4.1E-13 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_43470 d6f3ec50f21fb6c70de3ef60c0afbf8e 382 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 273 381 2.9E-15 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_43470 d6f3ec50f21fb6c70de3ef60c0afbf8e 382 SMART SM00387 273 382 1.4E-22 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_43470 d6f3ec50f21fb6c70de3ef60c0afbf8e 382 Gene3D G3DSA:1.10.287.130 115 227 5.7E-28 T 13-10-2018 RAM_43470 d6f3ec50f21fb6c70de3ef60c0afbf8e 382 SMART SM00304 111 164 3.9E-12 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_41385 f034af9d79052748197e399f7da890e5 331 Pfam PF02401 LytB protein 25 302 1.7E-88 T 13-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 RAM_41385 f034af9d79052748197e399f7da890e5 331 Gene3D G3DSA:3.40.50.11270 34 118 3.5E-109 T 13-10-2018 RAM_41385 f034af9d79052748197e399f7da890e5 331 Gene3D G3DSA:3.40.1010.20 28 301 3.5E-109 T 13-10-2018 RAM_41385 f034af9d79052748197e399f7da890e5 331 Gene3D G3DSA:3.40.1010.20 119 215 3.5E-109 T 13-10-2018 RAM_41385 f034af9d79052748197e399f7da890e5 331 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 25 302 2.7E-96 T 13-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 RAM_41385 f034af9d79052748197e399f7da890e5 331 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 23 306 36.778 T 13-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 RAM_39260 3a997ea38ece7e8f52a58b62484096ce 229 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 61 1.9E-13 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_39260 3a997ea38ece7e8f52a58b62484096ce 229 SUPERFAMILY SSF46689 4 72 3.44E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_39260 3a997ea38ece7e8f52a58b62484096ce 229 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 1.3E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_39260 3a997ea38ece7e8f52a58b62484096ce 229 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 1.3E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_39260 3a997ea38ece7e8f52a58b62484096ce 229 SUPERFAMILY SSF48498 81 157 4.58E-5 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_39260 3a997ea38ece7e8f52a58b62484096ce 229 Gene3D G3DSA:1.10.357.10 2 190 8.1E-26 T 13-10-2018 RAM_12310 c71b2b7f15602e728c545df116150ad3 377 Pfam PF00144 Beta-lactamase 11 358 6.5E-65 T 13-10-2018 IPR001466 Beta-lactamase-related RAM_12310 c71b2b7f15602e728c545df116150ad3 377 Gene3D G3DSA:3.40.710.10 7 371 8.3E-95 T 13-10-2018 RAM_12310 c71b2b7f15602e728c545df116150ad3 377 SUPERFAMILY SSF56601 13 361 5.79E-80 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_43685 49c8da8778d2995f7882d54c4d31f7f5 355 Gene3D G3DSA:2.40.50.140 240 348 6.4E-10 T 13-10-2018 RAM_43685 49c8da8778d2995f7882d54c4d31f7f5 355 Gene3D G3DSA:3.40.50.300 16 231 7.7E-66 T 13-10-2018 RAM_43685 49c8da8778d2995f7882d54c4d31f7f5 355 Pfam PF03459 TOBE domain 286 348 1.3E-8 T 13-10-2018 IPR005116 Transport-associated OB, type 1 RAM_43685 49c8da8778d2995f7882d54c4d31f7f5 355 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_43685 49c8da8778d2995f7882d54c4d31f7f5 355 SUPERFAMILY SSF52540 7 230 2.55E-65 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_43685 49c8da8778d2995f7882d54c4d31f7f5 355 Pfam PF00005 ABC transporter 17 158 8.6E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_43685 49c8da8778d2995f7882d54c4d31f7f5 355 Gene3D G3DSA:2.40.50.100 270 345 6.4E-10 T 13-10-2018 RAM_43685 49c8da8778d2995f7882d54c4d31f7f5 355 SUPERFAMILY SSF50331 231 349 4.89E-14 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal RAM_43685 49c8da8778d2995f7882d54c4d31f7f5 355 SMART SM00382 24 206 2.4E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_07050 28dc64a82a656ba821173ed0b26b6e7f 221 Pfam PF00457 Glycosyl hydrolases family 11 43 218 2.0E-76 T 13-10-2018 IPR033123 Glycosyl hydrolases family 11 (GH11) domain MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_07050 28dc64a82a656ba821173ed0b26b6e7f 221 SUPERFAMILY SSF49899 34 220 8.34E-78 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily RAM_07050 28dc64a82a656ba821173ed0b26b6e7f 221 PRINTS PR00911 Glycosyl hydrolase family 11 signature 189 197 6.7E-18 T 13-10-2018 IPR001137 Glycoside hydrolase family 11 GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_07050 28dc64a82a656ba821173ed0b26b6e7f 221 PRINTS PR00911 Glycosyl hydrolase family 11 signature 105 114 6.7E-18 T 13-10-2018 IPR001137 Glycoside hydrolase family 11 GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_07050 28dc64a82a656ba821173ed0b26b6e7f 221 PRINTS PR00911 Glycosyl hydrolase family 11 signature 161 166 6.7E-18 T 13-10-2018 IPR001137 Glycoside hydrolase family 11 GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_07050 28dc64a82a656ba821173ed0b26b6e7f 221 PRINTS PR00911 Glycosyl hydrolase family 11 signature 141 147 6.7E-18 T 13-10-2018 IPR001137 Glycoside hydrolase family 11 GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_07050 28dc64a82a656ba821173ed0b26b6e7f 221 PRINTS PR00911 Glycosyl hydrolase family 11 signature 115 125 6.7E-18 T 13-10-2018 IPR001137 Glycoside hydrolase family 11 GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_07050 28dc64a82a656ba821173ed0b26b6e7f 221 PRINTS PR00911 Glycosyl hydrolase family 11 signature 166 175 6.7E-18 T 13-10-2018 IPR001137 Glycoside hydrolase family 11 GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_07050 28dc64a82a656ba821173ed0b26b6e7f 221 ProSitePatterns PS00776 Glycosyl hydrolases family 11 (GH11) active site signature 1. 115 125 - T 13-10-2018 IPR018208 Glycoside hydrolase family 11, active site 1 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_07050 28dc64a82a656ba821173ed0b26b6e7f 221 Gene3D G3DSA:2.60.120.180 32 221 1.7E-84 T 13-10-2018 IPR013319 Glycoside hydrolase family 11/12 GO:0004553 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_07050 28dc64a82a656ba821173ed0b26b6e7f 221 ProSitePatterns PS00777 Glycosyl hydrolases family 11 (GH11) active site signature 2. 205 216 - T 13-10-2018 IPR033119 Glycoside hydrolase family 11, active site 2 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_20860 c6c4803268d50ebf24f7c858cc5ea6a5 1032 Pfam PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase 733 787 2.8E-5 T 13-10-2018 IPR018905 Alpha-galactosidase, NEW3 domain RAM_20860 c6c4803268d50ebf24f7c858cc5ea6a5 1032 Gene3D G3DSA:2.60.120.260 553 701 3.6E-29 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_20860 c6c4803268d50ebf24f7c858cc5ea6a5 1032 SUPERFAMILY SSF49785 563 685 1.08E-10 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_20860 c6c4803268d50ebf24f7c858cc5ea6a5 1032 Pfam PF00754 F5/8 type C domain 565 686 7.4E-12 T 13-10-2018 IPR000421 Coagulation factor 5/8 C-terminal domain RAM_20860 c6c4803268d50ebf24f7c858cc5ea6a5 1032 Gene3D G3DSA:1.50.10.10 129 431 8.2E-17 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 RAM_20860 c6c4803268d50ebf24f7c858cc5ea6a5 1032 SUPERFAMILY SSF48208 70 525 5.95E-24 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_00995 d91cd48d9c951828fc2603e098247591 197 SUPERFAMILY SSF46689 3 77 2.79E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_00995 d91cd48d9c951828fc2603e098247591 197 Gene3D G3DSA:1.10.357.10 1 196 1.2E-42 T 13-10-2018 RAM_00995 d91cd48d9c951828fc2603e098247591 197 SUPERFAMILY SSF48498 76 190 1.26E-5 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_00995 d91cd48d9c951828fc2603e098247591 197 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 31 54 8.8E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_00995 d91cd48d9c951828fc2603e098247591 197 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 10 23 8.8E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_00995 d91cd48d9c951828fc2603e098247591 197 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 56 2.5E-15 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_05225 438a070bef9d1d3e66af7a6b469db881 363 TIGRFAM TIGR03539 DapC_actino: succinyldiaminopimelate transaminase 6 362 2.8E-177 T 13-10-2018 IPR019880 4-dedimethylamino-4-oxo-anhydrotetracycline transaminase OxyQ RAM_05225 438a070bef9d1d3e66af7a6b469db881 363 Pfam PF00155 Aminotransferase class I and II 28 361 9.8E-45 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RAM_05225 438a070bef9d1d3e66af7a6b469db881 363 SUPERFAMILY SSF53383 19 362 5.59E-82 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_05225 438a070bef9d1d3e66af7a6b469db881 363 Gene3D G3DSA:3.40.640.10 40 268 1.5E-85 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_05225 438a070bef9d1d3e66af7a6b469db881 363 Gene3D G3DSA:3.90.1150.10 12 354 1.5E-85 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_29520 0a6c8a0053b553b8cead893d88110cbf 284 Pfam PF13377 Periplasmic binding protein-like domain 112 281 4.3E-28 T 13-10-2018 RAM_29520 0a6c8a0053b553b8cead893d88110cbf 284 Gene3D G3DSA:3.40.50.2300 5 273 1.7E-57 T 13-10-2018 RAM_29520 0a6c8a0053b553b8cead893d88110cbf 284 Gene3D G3DSA:3.40.50.2300 103 278 1.7E-57 T 13-10-2018 RAM_29520 0a6c8a0053b553b8cead893d88110cbf 284 SUPERFAMILY SSF53822 2 253 1.09E-48 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_32570 d92331dec5688e74bff0bc24a21f8fa5 123 Pfam PF01638 HxlR-like helix-turn-helix 19 105 2.0E-27 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type RAM_32570 d92331dec5688e74bff0bc24a21f8fa5 123 Gene3D G3DSA:1.10.10.10 1 118 5.1E-45 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_32570 d92331dec5688e74bff0bc24a21f8fa5 123 SUPERFAMILY SSF46785 4 117 1.3E-34 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_07545 0fda77a9ea7de04d9638620506831bb6 878 Gene3D G3DSA:2.160.20.10 30 139 5.0E-10 T 13-10-2018 IPR012334 Pectin lyase fold RAM_07545 0fda77a9ea7de04d9638620506831bb6 878 SUPERFAMILY SSF51126 40 616 1.33E-21 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor RAM_07545 0fda77a9ea7de04d9638620506831bb6 878 Pfam PF13229 Right handed beta helix region 392 591 1.9E-6 T 13-10-2018 IPR039448 Right handed beta helix domain RAM_07545 0fda77a9ea7de04d9638620506831bb6 878 Gene3D G3DSA:2.160.20.10 316 650 9.0E-12 T 13-10-2018 IPR012334 Pectin lyase fold RAM_07545 0fda77a9ea7de04d9638620506831bb6 878 Gene3D G3DSA:2.60.40.10 776 878 3.0E-13 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_07545 0fda77a9ea7de04d9638620506831bb6 878 Gene3D G3DSA:2.60.40.10 675 775 3.2E-11 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_07545 0fda77a9ea7de04d9638620506831bb6 878 Pfam PF00041 Fibronectin type III domain 791 867 5.7E-9 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 RAM_07545 0fda77a9ea7de04d9638620506831bb6 878 Pfam PF00041 Fibronectin type III domain 692 764 1.9E-6 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 RAM_07545 0fda77a9ea7de04d9638620506831bb6 878 SUPERFAMILY SSF49265 693 875 3.54E-24 T 13-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 RAM_07545 0fda77a9ea7de04d9638620506831bb6 878 SMART SM00060 678 761 0.015 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 RAM_07545 0fda77a9ea7de04d9638620506831bb6 878 SMART SM00060 780 866 2.0E-7 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 RAM_40515 e88c16d9daee1d2c323d7819d8e372c5 520 Gene3D G3DSA:3.40.50.970 329 519 6.8E-47 T 13-10-2018 RAM_40515 e88c16d9daee1d2c323d7819d8e372c5 520 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 167 1.0E-31 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RAM_40515 e88c16d9daee1d2c323d7819d8e372c5 520 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 377 514 4.2E-29 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RAM_40515 e88c16d9daee1d2c323d7819d8e372c5 520 Gene3D G3DSA:3.40.50.970 1 172 1.9E-39 T 13-10-2018 RAM_40515 e88c16d9daee1d2c323d7819d8e372c5 520 SUPERFAMILY SSF52518 337 518 1.54E-43 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_40515 e88c16d9daee1d2c323d7819d8e372c5 520 SUPERFAMILY SSF52518 4 182 6.87E-37 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_09860 f09de56212cfcc8f3f372eaf1a31db31 443 Gene3D G3DSA:3.40.30.120 347 443 2.6E-7 T 13-10-2018 RAM_09860 f09de56212cfcc8f3f372eaf1a31db31 443 Gene3D G3DSA:3.50.50.60 4 326 5.0E-100 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_09860 f09de56212cfcc8f3f372eaf1a31db31 443 Gene3D G3DSA:3.30.70.2450 167 252 5.0E-100 T 13-10-2018 RAM_09860 f09de56212cfcc8f3f372eaf1a31db31 443 SUPERFAMILY SSF51905 2 340 8.5E-56 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_09860 f09de56212cfcc8f3f372eaf1a31db31 443 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 138 153 5.8E-43 T 13-10-2018 RAM_09860 f09de56212cfcc8f3f372eaf1a31db31 443 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 278 294 5.8E-43 T 13-10-2018 RAM_09860 f09de56212cfcc8f3f372eaf1a31db31 443 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 263 278 5.8E-43 T 13-10-2018 RAM_09860 f09de56212cfcc8f3f372eaf1a31db31 443 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 296 314 5.8E-43 T 13-10-2018 RAM_09860 f09de56212cfcc8f3f372eaf1a31db31 443 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 314 330 5.8E-43 T 13-10-2018 RAM_09860 f09de56212cfcc8f3f372eaf1a31db31 443 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 3 25 5.8E-43 T 13-10-2018 RAM_09860 f09de56212cfcc8f3f372eaf1a31db31 443 Pfam PF01494 FAD binding domain 3 326 6.5E-73 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_36725 cf78ec42dbd6e3e4b4570529cd9f6316 123 Pfam PF13564 DoxX-like family 7 112 7.4E-33 T 13-10-2018 IPR032808 DoxX family RAM_24155 04666ff5d246177c75f3289d87576acb 939 Pfam PF05147 Lanthionine synthetase C-like protein 582 936 3.6E-36 T 13-10-2018 IPR007822 Lanthionine synthetase C-like RAM_24155 04666ff5d246177c75f3289d87576acb 939 TIGRFAM TIGR03897 lanti_2_LanM: type 2 lantibiotic biosynthesis protein LanM 49 926 2.9E-139 T 13-10-2018 IPR017146 Type 2 lantibiotic biosynthesis protein LanM RAM_24155 04666ff5d246177c75f3289d87576acb 939 SMART SM01260 581 937 5.2E-47 T 13-10-2018 IPR007822 Lanthionine synthetase C-like RAM_24155 04666ff5d246177c75f3289d87576acb 939 Gene3D G3DSA:1.50.10.10 575 935 4.4E-31 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 RAM_24155 04666ff5d246177c75f3289d87576acb 939 PRINTS PR01950 LanC-like protein superfamily signature 855 868 1.7E-15 T 13-10-2018 IPR007822 Lanthionine synthetase C-like RAM_24155 04666ff5d246177c75f3289d87576acb 939 PRINTS PR01950 LanC-like protein superfamily signature 584 602 1.7E-15 T 13-10-2018 IPR007822 Lanthionine synthetase C-like RAM_24155 04666ff5d246177c75f3289d87576acb 939 PRINTS PR01950 LanC-like protein superfamily signature 687 702 1.7E-15 T 13-10-2018 IPR007822 Lanthionine synthetase C-like RAM_24155 04666ff5d246177c75f3289d87576acb 939 PRINTS PR01950 LanC-like protein superfamily signature 744 760 1.7E-15 T 13-10-2018 IPR007822 Lanthionine synthetase C-like RAM_24155 04666ff5d246177c75f3289d87576acb 939 PRINTS PR01950 LanC-like protein superfamily signature 909 926 1.7E-15 T 13-10-2018 IPR007822 Lanthionine synthetase C-like RAM_24155 04666ff5d246177c75f3289d87576acb 939 PRINTS PR01950 LanC-like protein superfamily signature 809 829 1.7E-15 T 13-10-2018 IPR007822 Lanthionine synthetase C-like RAM_24155 04666ff5d246177c75f3289d87576acb 939 Pfam PF13575 Domain of unknown function (DUF4135) 105 483 1.1E-87 T 13-10-2018 IPR025410 Lantibiotic biosynthesis protein, dehydration domain RAM_24155 04666ff5d246177c75f3289d87576acb 939 SUPERFAMILY SSF158745 576 939 1.96E-50 T 13-10-2018 RAM_24155 04666ff5d246177c75f3289d87576acb 939 PIRSF PIRSF037228 17 497 3.2E-63 T 13-10-2018 IPR017146 Type 2 lantibiotic biosynthesis protein LanM RAM_24155 04666ff5d246177c75f3289d87576acb 939 PIRSF PIRSF037228 488 939 9.5E-50 T 13-10-2018 IPR017146 Type 2 lantibiotic biosynthesis protein LanM RAM_04400 73c9acf905ac3266e731307c4954d1fb 346 SUPERFAMILY SSF51556 3 336 5.11E-65 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_04400 73c9acf905ac3266e731307c4954d1fb 346 TIGRFAM TIGR01430 aden_deam: adenosine deaminase 3 336 2.3E-74 T 13-10-2018 IPR006330 Adenosine/adenine deaminase GO:0019239 Reactome: R-HSA-74217 RAM_04400 73c9acf905ac3266e731307c4954d1fb 346 Pfam PF00962 Adenosine/AMP deaminase 1 335 2.6E-83 T 13-10-2018 IPR001365 Adenosine/AMP deaminase domain GO:0019239 Reactome: R-HSA-74217 RAM_04400 73c9acf905ac3266e731307c4954d1fb 346 Gene3D G3DSA:3.20.20.140 1 342 8.3E-97 T 13-10-2018 RAM_06925 c83b1195dd4a806c19f568e8bb3685c9 304 Pfam PF00892 EamA-like transporter family 142 275 6.6E-23 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RAM_06925 c83b1195dd4a806c19f568e8bb3685c9 304 Pfam PF00892 EamA-like transporter family 6 132 8.4E-14 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RAM_06925 c83b1195dd4a806c19f568e8bb3685c9 304 SUPERFAMILY SSF103481 45 136 1.44E-13 T 13-10-2018 RAM_06925 c83b1195dd4a806c19f568e8bb3685c9 304 SUPERFAMILY SSF103481 176 280 1.7E-17 T 13-10-2018 RAM_40540 9cc6d5265fa05eecc58f3f63795e68ed 355 SUPERFAMILY SSF55874 249 353 4.37E-15 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_40540 9cc6d5265fa05eecc58f3f63795e68ed 355 Pfam PF07730 Histidine kinase 168 231 1.4E-18 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_40540 9cc6d5265fa05eecc58f3f63795e68ed 355 Gene3D G3DSA:3.30.565.10 234 354 3.0E-33 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_25660 7b50d7f201e3abe313835f44367e4d8f 314 Pfam PF02911 Formyl transferase, C-terminal domain 205 305 2.8E-14 T 13-10-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RAM_25660 7b50d7f201e3abe313835f44367e4d8f 314 SUPERFAMILY SSF53328 1 202 3.27E-56 T 13-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RAM_25660 7b50d7f201e3abe313835f44367e4d8f 314 Pfam PF00551 Formyl transferase 1 170 3.8E-30 T 13-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RAM_25660 7b50d7f201e3abe313835f44367e4d8f 314 Gene3D G3DSA:3.40.50.12230 1 307 9.7E-83 T 13-10-2018 RAM_25660 7b50d7f201e3abe313835f44367e4d8f 314 SUPERFAMILY SSF50486 206 307 7.22E-17 T 13-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 RAM_25340 ad5c3711dea3351ea61a20675bddbee4 264 SMART SM00530 12 67 1.9E-9 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_25340 ad5c3711dea3351ea61a20675bddbee4 264 Gene3D G3DSA:1.10.260.40 6 77 6.2E-11 T 13-10-2018 RAM_25340 ad5c3711dea3351ea61a20675bddbee4 264 Pfam PF13560 Helix-turn-helix domain 9 70 7.5E-11 T 13-10-2018 RAM_25340 ad5c3711dea3351ea61a20675bddbee4 264 SUPERFAMILY SSF47413 7 66 4.5E-12 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_27375 a88c6714209d88f15c7a562118530cde 607 SUPERFAMILY SSF51905 74 316 3.42E-40 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_27375 a88c6714209d88f15c7a562118530cde 607 Pfam PF00743 Flavin-binding monooxygenase-like 144 287 4.3E-9 T 13-10-2018 IPR020946 Flavin monooxygenase-like GO:0004499|GO:0050660|GO:0050661|GO:0055114 RAM_27375 a88c6714209d88f15c7a562118530cde 607 Gene3D G3DSA:3.50.50.60 420 601 2.0E-26 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_27375 a88c6714209d88f15c7a562118530cde 607 SUPERFAMILY SSF51905 348 598 1.33E-14 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_27375 a88c6714209d88f15c7a562118530cde 607 Gene3D G3DSA:3.50.50.60 67 354 7.9E-54 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_27375 a88c6714209d88f15c7a562118530cde 607 Pfam PF13450 NAD(P)-binding Rossmann-like domain 77 125 3.9E-7 T 13-10-2018 RAM_38460 b061848cb8ca77fc46a0fca6b6c31750 584 SUPERFAMILY SSF51445 8 328 7.97E-105 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_38460 b061848cb8ca77fc46a0fca6b6c31750 584 PIRSF PIRSF006336 2 574 1.6E-176 T 13-10-2018 IPR026283 Beta-galactosidase 1-like GO:0004565 RAM_38460 b061848cb8ca77fc46a0fca6b6c31750 584 SUPERFAMILY SSF49785 437 564 4.86E-25 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_38460 b061848cb8ca77fc46a0fca6b6c31750 584 Gene3D G3DSA:3.20.20.80 3 271 4.1E-102 T 13-10-2018 RAM_38460 b061848cb8ca77fc46a0fca6b6c31750 584 PRINTS PR00742 Glycosyl hydrolase family 35 signature 90 109 2.2E-57 T 13-10-2018 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_38460 b061848cb8ca77fc46a0fca6b6c31750 584 PRINTS PR00742 Glycosyl hydrolase family 35 signature 293 309 2.2E-57 T 13-10-2018 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_38460 b061848cb8ca77fc46a0fca6b6c31750 584 PRINTS PR00742 Glycosyl hydrolase family 35 signature 522 538 2.2E-57 T 13-10-2018 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_38460 b061848cb8ca77fc46a0fca6b6c31750 584 PRINTS PR00742 Glycosyl hydrolase family 35 signature 35 53 2.2E-57 T 13-10-2018 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_38460 b061848cb8ca77fc46a0fca6b6c31750 584 PRINTS PR00742 Glycosyl hydrolase family 35 signature 14 31 2.2E-57 T 13-10-2018 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_38460 b061848cb8ca77fc46a0fca6b6c31750 584 PRINTS PR00742 Glycosyl hydrolase family 35 signature 231 246 2.2E-57 T 13-10-2018 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_38460 b061848cb8ca77fc46a0fca6b6c31750 584 PRINTS PR00742 Glycosyl hydrolase family 35 signature 145 160 2.2E-57 T 13-10-2018 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_38460 b061848cb8ca77fc46a0fca6b6c31750 584 PRINTS PR00742 Glycosyl hydrolase family 35 signature 267 282 2.2E-57 T 13-10-2018 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_38460 b061848cb8ca77fc46a0fca6b6c31750 584 ProSitePatterns PS01182 Glycosyl hydrolases family 35 putative active site. 147 159 - T 13-10-2018 IPR019801 Glycoside hydrolase, family 35, conserved site GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_38460 b061848cb8ca77fc46a0fca6b6c31750 584 Pfam PF01301 Glycosyl hydrolases family 35 11 324 2.1E-114 T 13-10-2018 IPR031330 Glycoside hydrolase 35, catalytic domain KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_38460 b061848cb8ca77fc46a0fca6b6c31750 584 Gene3D G3DSA:2.60.120.260 346 476 4.4E-84 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_38460 b061848cb8ca77fc46a0fca6b6c31750 584 Gene3D G3DSA:2.60.120.260 272 563 4.4E-84 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_30805 776ada4dbd97a03e272001f769bdb03e 280 PIRSF PIRSF019345 91 280 6.3E-53 T 13-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 RAM_30805 776ada4dbd97a03e272001f769bdb03e 280 SUPERFAMILY SSF46785 104 180 9.66E-13 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_30805 776ada4dbd97a03e272001f769bdb03e 280 Gene3D G3DSA:1.10.10.10 182 275 2.1E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_30805 776ada4dbd97a03e272001f769bdb03e 280 Pfam PF04079 Segregation and condensation complex subunit ScpB 108 265 2.8E-46 T 13-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 RAM_30805 776ada4dbd97a03e272001f769bdb03e 280 SUPERFAMILY SSF46785 184 257 2.78E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_30805 776ada4dbd97a03e272001f769bdb03e 280 TIGRFAM TIGR00281 TIGR00281: segregation and condensation protein B 106 267 1.1E-27 T 13-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 RAM_30805 776ada4dbd97a03e272001f769bdb03e 280 Gene3D G3DSA:1.10.10.10 93 181 1.6E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_28690 7c3d993d35e958d47191d7919e878eeb 199 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 2 83 4.7E-11 T 13-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal RAM_28690 7c3d993d35e958d47191d7919e878eeb 199 SUPERFAMILY SSF51735 1 189 8.36E-34 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_28690 7c3d993d35e958d47191d7919e878eeb 199 Gene3D G3DSA:3.40.50.720 1 199 9.2E-47 T 13-10-2018 RAM_15890 02d1f79853106cfee5b50127f30ed85f 320 Gene3D G3DSA:3.90.180.10 13 316 5.5E-75 T 13-10-2018 RAM_15890 02d1f79853106cfee5b50127f30ed85f 320 Gene3D G3DSA:3.40.50.720 126 263 5.5E-75 T 13-10-2018 RAM_15890 02d1f79853106cfee5b50127f30ed85f 320 Pfam PF13602 Zinc-binding dehydrogenase 196 317 8.5E-20 T 13-10-2018 RAM_15890 02d1f79853106cfee5b50127f30ed85f 320 SUPERFAMILY SSF51735 116 266 7.66E-32 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_15890 02d1f79853106cfee5b50127f30ed85f 320 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 143 164 - T 13-10-2018 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 RAM_15890 02d1f79853106cfee5b50127f30ed85f 320 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 31 93 2.2E-7 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_15890 02d1f79853106cfee5b50127f30ed85f 320 SMART SM00829 14 317 2.9E-28 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_15890 02d1f79853106cfee5b50127f30ed85f 320 SUPERFAMILY SSF50129 5 152 1.05E-29 T 13-10-2018 IPR011032 GroES-like superfamily RAM_19715 2795bf87788958b2c391e669cdaca511 383 Gene3D G3DSA:2.40.110.10 121 235 2.6E-31 T 13-10-2018 RAM_19715 2795bf87788958b2c391e669cdaca511 383 Gene3D G3DSA:1.20.140.10 236 380 2.0E-41 T 13-10-2018 RAM_19715 2795bf87788958b2c391e669cdaca511 383 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 108 1.5E-20 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_19715 2795bf87788958b2c391e669cdaca511 383 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 231 378 1.4E-40 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_19715 2795bf87788958b2c391e669cdaca511 383 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 122 218 2.8E-18 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RAM_19715 2795bf87788958b2c391e669cdaca511 383 SUPERFAMILY SSF56645 2 240 1.7E-60 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_19715 2795bf87788958b2c391e669cdaca511 383 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 124 136 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RAM_19715 2795bf87788958b2c391e669cdaca511 383 Gene3D G3DSA:1.10.540.10 1 119 5.5E-25 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_19715 2795bf87788958b2c391e669cdaca511 383 SUPERFAMILY SSF47203 229 378 1.93E-41 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_45705 5cd52ebe1eb4e6097fc5b20f2c94827f 369 Gene3D G3DSA:3.40.50.2000 208 352 2.3E-24 T 13-10-2018 RAM_45705 5cd52ebe1eb4e6097fc5b20f2c94827f 369 Gene3D G3DSA:3.40.50.2000 6 207 1.1E-41 T 13-10-2018 RAM_45705 5cd52ebe1eb4e6097fc5b20f2c94827f 369 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 95 322 2.4E-40 T 13-10-2018 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 RAM_45705 5cd52ebe1eb4e6097fc5b20f2c94827f 369 SUPERFAMILY SSF53756 6 353 9.63E-50 T 13-10-2018 RAM_39935 504d8082cc0988183f432624f55dd328 118 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 2 97 1.8E-22 T 13-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RAM_39935 504d8082cc0988183f432624f55dd328 118 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 6 81 1.0E-25 T 13-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RAM_39935 504d8082cc0988183f432624f55dd328 118 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 1 113 14.042 T 13-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RAM_39935 504d8082cc0988183f432624f55dd328 118 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 1 81 1.5E-24 T 13-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RAM_39935 504d8082cc0988183f432624f55dd328 118 SUPERFAMILY SSF51344 1 83 9.02E-20 T 13-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RAM_39935 504d8082cc0988183f432624f55dd328 118 Gene3D G3DSA:2.60.15.10 1 117 2.9E-28 T 13-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RAM_31105 3b8cf27fb7de03ae5499396c5901f2b4 424 SUPERFAMILY SSF53850 14 423 1.35E-77 T 13-10-2018 RAM_31105 3b8cf27fb7de03ae5499396c5901f2b4 424 Pfam PF01547 Bacterial extracellular solute-binding protein 50 339 5.8E-36 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein RAM_31105 3b8cf27fb7de03ae5499396c5901f2b4 424 Gene3D G3DSA:3.40.190.10 152 418 4.1E-88 T 13-10-2018 RAM_31105 3b8cf27fb7de03ae5499396c5901f2b4 424 Gene3D G3DSA:3.40.190.10 53 380 4.1E-88 T 13-10-2018 RAM_04205 2cebba7138354fa7476659a4de45860a 392 SUPERFAMILY SSF103473 9 383 1.57E-59 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_04205 2cebba7138354fa7476659a4de45860a 392 Pfam PF07690 Major Facilitator Superfamily 210 386 7.3E-12 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_04205 2cebba7138354fa7476659a4de45860a 392 Pfam PF07690 Major Facilitator Superfamily 12 188 1.2E-28 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_04205 2cebba7138354fa7476659a4de45860a 392 Gene3D G3DSA:1.20.1250.20 5 377 8.0E-49 T 13-10-2018 RAM_02145 28670c654372aa34f50b81b9ebf29130 467 SUPERFAMILY SSF46785 18 83 1.66E-14 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_02145 28670c654372aa34f50b81b9ebf29130 467 Gene3D G3DSA:3.90.1150.10 353 450 4.0E-76 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_02145 28670c654372aa34f50b81b9ebf29130 467 Pfam PF00155 Aminotransferase class I and II 124 448 2.1E-27 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RAM_02145 28670c654372aa34f50b81b9ebf29130 467 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 77 3.0E-12 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_02145 28670c654372aa34f50b81b9ebf29130 467 SUPERFAMILY SSF53383 91 451 1.25E-76 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_02145 28670c654372aa34f50b81b9ebf29130 467 Gene3D G3DSA:1.10.10.10 17 93 6.4E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_02145 28670c654372aa34f50b81b9ebf29130 467 SMART SM00345 20 79 1.2E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_02145 28670c654372aa34f50b81b9ebf29130 467 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 53 69 2.4E-6 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_02145 28670c654372aa34f50b81b9ebf29130 467 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 39 53 2.4E-6 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_02145 28670c654372aa34f50b81b9ebf29130 467 Gene3D G3DSA:3.40.640.10 132 352 4.0E-76 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_25015 d481c5e70f5966464120aeb5080c1d1c 87 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 1 87 17.364 T 13-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 RAM_25015 d481c5e70f5966464120aeb5080c1d1c 87 Gene3D G3DSA:1.10.287.1080 1 87 2.2E-21 T 13-10-2018 RAM_25015 d481c5e70f5966464120aeb5080c1d1c 87 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 12 85 4.3E-5 T 13-10-2018 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 RAM_25015 d481c5e70f5966464120aeb5080c1d1c 87 SUPERFAMILY SSF101386 2 87 2.18E-20 T 13-10-2018 RAM_25015 d481c5e70f5966464120aeb5080c1d1c 87 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 5 87 4.9E-21 T 13-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 RAM_47095 700f36c39823ab9653b49388c6d98634 395 Gene3D G3DSA:1.10.10.10 112 162 8.4E-7 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_47095 700f36c39823ab9653b49388c6d98634 395 SUPERFAMILY SSF88946 5 83 1.41E-13 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_47095 700f36c39823ab9653b49388c6d98634 395 Pfam PF04542 Sigma-70 region 2 11 78 1.8E-10 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_47095 700f36c39823ab9653b49388c6d98634 395 Pfam PF08281 Sigma-70, region 4 108 158 2.1E-7 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_47095 700f36c39823ab9653b49388c6d98634 395 SUPERFAMILY SSF88659 101 160 1.78E-8 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_47095 700f36c39823ab9653b49388c6d98634 395 Gene3D G3DSA:1.10.1740.10 2 74 5.4E-9 T 13-10-2018 RAM_47095 700f36c39823ab9653b49388c6d98634 395 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 26 160 5.8E-12 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_26765 87989c88fc7c4cff82cedd947b71cc65 320 Gene3D G3DSA:3.60.15.10 13 241 4.1E-34 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_26765 87989c88fc7c4cff82cedd947b71cc65 320 SUPERFAMILY SSF56281 17 311 2.9E-49 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_26765 87989c88fc7c4cff82cedd947b71cc65 320 Pfam PF00753 Metallo-beta-lactamase superfamily 34 222 1.6E-10 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_26765 87989c88fc7c4cff82cedd947b71cc65 320 SMART SM00849 34 223 7.1E-7 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_44675 c2451d797d6891e31eb551e98321ca27 462 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 251 371 9.6E-16 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RAM_44675 c2451d797d6891e31eb551e98321ca27 462 Gene3D G3DSA:3.40.50.300 205 373 4.3E-28 T 13-10-2018 RAM_44675 c2451d797d6891e31eb551e98321ca27 462 SUPERFAMILY SSF52540 212 427 5.76E-31 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_44675 c2451d797d6891e31eb551e98321ca27 462 Gene3D G3DSA:1.10.8.60 374 453 4.5E-5 T 13-10-2018 RAM_44675 c2451d797d6891e31eb551e98321ca27 462 SMART SM00382 247 374 6.0E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_26230 1fc83e28b36def66c06ae3a33d6c4b88 205 Pfam PF14273 Domain of unknown function (DUF4360) 27 205 1.0E-60 T 13-10-2018 IPR025649 Protein of unknown function DUF4360 RAM_35520 a624879f4218152894446d4c32d2b147 583 SUPERFAMILY SSF52402 176 556 6.7E-28 T 13-10-2018 RAM_35520 a624879f4218152894446d4c32d2b147 583 PIRSF PIRSF001589 33 581 7.4E-36 T 13-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 RAM_35520 a624879f4218152894446d4c32d2b147 583 Pfam PF00733 Asparagine synthase 185 575 5.4E-32 T 13-10-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 RAM_35520 a624879f4218152894446d4c32d2b147 583 Gene3D G3DSA:3.60.20.10 41 169 8.5E-9 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RAM_35520 a624879f4218152894446d4c32d2b147 583 SUPERFAMILY SSF56235 57 166 1.16E-9 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RAM_35520 a624879f4218152894446d4c32d2b147 583 Gene3D G3DSA:3.40.50.620 173 382 1.8E-18 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAM_35520 a624879f4218152894446d4c32d2b147 583 Gene3D G3DSA:3.40.50.620 393 535 1.4E-10 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAM_44865 8159655b9cef22c8c8009ea5d94d7d0d 159 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 1 126 1.1E-28 T 13-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 RAM_44865 8159655b9cef22c8c8009ea5d94d7d0d 159 SUPERFAMILY SSF55083 1 147 5.62E-41 T 13-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 RAM_44865 8159655b9cef22c8c8009ea5d94d7d0d 159 Gene3D G3DSA:3.30.70.560 1 151 2.7E-40 T 13-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 RAM_44865 8159655b9cef22c8c8009ea5d94d7d0d 159 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 81 92 - T 13-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 RAM_44865 8159655b9cef22c8c8009ea5d94d7d0d 159 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 1 126 2.7E-33 T 13-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 RAM_46510 0dffe4a7f28123f0ea145d00021578e8 381 Gene3D G3DSA:3.20.20.120 102 343 6.0E-134 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RAM_46510 0dffe4a7f28123f0ea145d00021578e8 381 SUPERFAMILY SSF51604 95 358 3.4E-68 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RAM_46510 0dffe4a7f28123f0ea145d00021578e8 381 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 180 211 - T 13-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 RAM_46510 0dffe4a7f28123f0ea145d00021578e8 381 SMART SM00922 125 231 2.3E-17 T 13-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal RAM_46510 0dffe4a7f28123f0ea145d00021578e8 381 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 14 107 3.9E-23 T 13-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain RAM_46510 0dffe4a7f28123f0ea145d00021578e8 381 SUPERFAMILY SSF54826 1 112 5.3E-29 T 13-10-2018 RAM_46510 0dffe4a7f28123f0ea145d00021578e8 381 Pfam PF13378 Enolase C-terminal domain-like 130 354 7.9E-61 T 13-10-2018 IPR029065 Enolase C-terminal domain-like RAM_46510 0dffe4a7f28123f0ea145d00021578e8 381 Gene3D G3DSA:3.30.390.10 11 373 6.0E-134 T 13-10-2018 IPR029017 Enolase-like, N-terminal RAM_22730 300be79de41ff6b24b04707376d6c2b3 405 SUPERFAMILY SSF53448 7 359 2.7E-66 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_22730 300be79de41ff6b24b04707376d6c2b3 405 Hamap MF_00624 Glucose-1-phosphate adenylyltransferase [glgC]. 4 404 45.836 T 13-10-2018 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 RAM_22730 300be79de41ff6b24b04707376d6c2b3 405 Pfam PF00483 Nucleotidyl transferase 9 276 4.7E-66 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 RAM_22730 300be79de41ff6b24b04707376d6c2b3 405 TIGRFAM TIGR02091 glgC: glucose-1-phosphate adenylyltransferase 7 378 9.0E-134 T 13-10-2018 IPR011831 Glucose-1-phosphate adenylyltransferase GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 RAM_22730 300be79de41ff6b24b04707376d6c2b3 405 SUPERFAMILY SSF51161 311 396 9.15E-17 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily RAM_22730 300be79de41ff6b24b04707376d6c2b3 405 Gene3D G3DSA:2.160.10.10 287 403 2.1E-32 T 13-10-2018 RAM_22730 300be79de41ff6b24b04707376d6c2b3 405 ProSitePatterns PS00810 ADP-glucose pyrophosphorylase signature 3. 196 206 - T 13-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 RAM_22730 300be79de41ff6b24b04707376d6c2b3 405 ProSitePatterns PS00808 ADP-glucose pyrophosphorylase signature 1. 13 32 - T 13-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 RAM_22730 300be79de41ff6b24b04707376d6c2b3 405 ProSitePatterns PS00809 ADP-glucose pyrophosphorylase signature 2. 98 106 - T 13-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 RAM_22730 300be79de41ff6b24b04707376d6c2b3 405 Gene3D G3DSA:3.90.550.10 3 286 2.9E-76 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_47200 824a91cf4bb24e18027f959be9f435c1 605 Gene3D G3DSA:2.120.10.30 315 430 1.8E-18 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RAM_47200 824a91cf4bb24e18027f959be9f435c1 605 Gene3D G3DSA:2.120.10.30 154 314 2.8E-22 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RAM_47200 824a91cf4bb24e18027f959be9f435c1 605 SUPERFAMILY SSF101898 156 464 3.4E-27 T 13-10-2018 RAM_47200 824a91cf4bb24e18027f959be9f435c1 605 Pfam PF01436 NHL repeat 401 428 2.4E-4 T 13-10-2018 IPR001258 NHL repeat GO:0005515 RAM_47200 824a91cf4bb24e18027f959be9f435c1 605 SUPERFAMILY SSF52833 13 144 5.56E-30 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RAM_47200 824a91cf4bb24e18027f959be9f435c1 605 Pfam PF00578 AhpC/TSA family 3 122 2.7E-10 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 RAM_47200 824a91cf4bb24e18027f959be9f435c1 605 Gene3D G3DSA:3.40.30.10 1 152 5.1E-35 T 13-10-2018 RAM_44035 09753fd82294007b5aef0616de46e391 219 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 15 219 25.253 T 13-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RAM_44035 09753fd82294007b5aef0616de46e391 219 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 17 214 1.7E-60 T 13-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RAM_44035 09753fd82294007b5aef0616de46e391 219 Pfam PF02581 Thiamine monophosphate synthase 18 201 4.5E-51 T 13-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RAM_44035 09753fd82294007b5aef0616de46e391 219 SUPERFAMILY SSF51391 9 215 1.2E-60 T 13-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RAM_44035 09753fd82294007b5aef0616de46e391 219 Gene3D G3DSA:3.20.20.70 8 218 4.2E-68 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_18285 aaafaa8b7627682c992d62b0dd68081d 296 SUPERFAMILY SSF50129 2 139 3.04E-26 T 13-10-2018 IPR011032 GroES-like superfamily RAM_18285 aaafaa8b7627682c992d62b0dd68081d 296 SUPERFAMILY SSF51735 103 289 3.8E-21 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_18285 aaafaa8b7627682c992d62b0dd68081d 296 Gene3D G3DSA:3.40.50.720 114 241 1.0E-56 T 13-10-2018 RAM_18285 aaafaa8b7627682c992d62b0dd68081d 296 Pfam PF13602 Zinc-binding dehydrogenase 188 290 2.3E-8 T 13-10-2018 RAM_18285 aaafaa8b7627682c992d62b0dd68081d 296 SMART SM00829 7 290 4.2E-11 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_18285 aaafaa8b7627682c992d62b0dd68081d 296 Gene3D G3DSA:3.90.180.10 8 289 1.0E-56 T 13-10-2018 RAM_39505 b2c4904311322e5079b4f047a4d97fc6 156 Pfam PF13560 Helix-turn-helix domain 12 74 2.1E-7 T 13-10-2018 RAM_39505 b2c4904311322e5079b4f047a4d97fc6 156 Gene3D G3DSA:1.10.260.40 5 73 1.3E-11 T 13-10-2018 RAM_39505 b2c4904311322e5079b4f047a4d97fc6 156 SUPERFAMILY SSF47413 7 72 6.48E-8 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_20575 70ae579d29bf0b675024031f2b87913f 321 SMART SM00382 36 219 4.6E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_20575 70ae579d29bf0b675024031f2b87913f 321 Pfam PF13732 Domain of unknown function (DUF4162) 224 314 6.6E-8 T 13-10-2018 IPR025302 Domain of unknown function DUF4162 RAM_20575 70ae579d29bf0b675024031f2b87913f 321 Pfam PF00005 ABC transporter 28 170 1.5E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_20575 70ae579d29bf0b675024031f2b87913f 321 TIGRFAM TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein 19 316 8.8E-106 T 13-10-2018 IPR005894 Daunorubicin resistance ABC transporter ATP-binding subunit DrrA GO:0005524|GO:0043215|GO:1900753 RAM_20575 70ae579d29bf0b675024031f2b87913f 321 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_20575 70ae579d29bf0b675024031f2b87913f 321 SUPERFAMILY SSF52540 11 233 4.6E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_20575 70ae579d29bf0b675024031f2b87913f 321 Gene3D G3DSA:3.40.50.300 2 246 1.1E-66 T 13-10-2018 RAM_10410 6f84814d6db19bf227fa1c6740d56282 227 Gene3D G3DSA:1.10.10.10 6 82 2.4E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_10410 6f84814d6db19bf227fa1c6740d56282 227 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 74 8.2E-20 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_10410 6f84814d6db19bf227fa1c6740d56282 227 Pfam PF07729 FCD domain 94 211 2.6E-18 T 13-10-2018 IPR011711 GntR, C-terminal RAM_10410 6f84814d6db19bf227fa1c6740d56282 227 Gene3D G3DSA:1.20.120.530 87 221 6.2E-22 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_10410 6f84814d6db19bf227fa1c6740d56282 227 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 5.9E-8 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_10410 6f84814d6db19bf227fa1c6740d56282 227 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 5.9E-8 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_10410 6f84814d6db19bf227fa1c6740d56282 227 SUPERFAMILY SSF48008 90 225 2.07E-23 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_10410 6f84814d6db19bf227fa1c6740d56282 227 SMART SM00345 15 74 9.8E-18 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_10410 6f84814d6db19bf227fa1c6740d56282 227 SUPERFAMILY SSF46785 6 88 2.07E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_10410 6f84814d6db19bf227fa1c6740d56282 227 SMART SM00895 94 219 5.5E-15 T 13-10-2018 IPR011711 GntR, C-terminal RAM_30480 02df5c4c08857abb08d50ceeef671d06 291 SUPERFAMILY SSF53649 47 275 7.63E-6 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 RAM_30480 02df5c4c08857abb08d50ceeef671d06 291 Pfam PF04185 Phosphoesterase family 66 275 8.5E-31 T 13-10-2018 IPR007312 Phosphoesterase GO:0016788 RAM_17630 aeb310c01d971af69704b9fe6de03a3f 1107 Gene3D G3DSA:2.120.10.30 2 165 3.5E-33 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RAM_17630 aeb310c01d971af69704b9fe6de03a3f 1107 Gene3D G3DSA:3.40.710.10 660 995 4.7E-83 T 13-10-2018 RAM_17630 aeb310c01d971af69704b9fe6de03a3f 1107 SUPERFAMILY SSF56601 661 995 5.64E-79 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_17630 aeb310c01d971af69704b9fe6de03a3f 1107 Gene3D G3DSA:3.40.50.1820 375 654 2.1E-64 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_17630 aeb310c01d971af69704b9fe6de03a3f 1107 Pfam PF00144 Beta-lactamase 665 986 9.2E-64 T 13-10-2018 IPR001466 Beta-lactamase-related RAM_17630 aeb310c01d971af69704b9fe6de03a3f 1107 Pfam PF07676 WD40-like Beta Propeller Repeat 57 90 7.8E-7 T 13-10-2018 IPR011659 WD40-like Beta Propeller RAM_17630 aeb310c01d971af69704b9fe6de03a3f 1107 Pfam PF07676 WD40-like Beta Propeller Repeat 19 35 0.015 T 13-10-2018 IPR011659 WD40-like Beta Propeller RAM_17630 aeb310c01d971af69704b9fe6de03a3f 1107 Pfam PF07676 WD40-like Beta Propeller Repeat 181 204 0.0021 T 13-10-2018 IPR011659 WD40-like Beta Propeller RAM_17630 aeb310c01d971af69704b9fe6de03a3f 1107 SUPERFAMILY SSF82171 17 342 2.22E-40 T 13-10-2018 RAM_17630 aeb310c01d971af69704b9fe6de03a3f 1107 Gene3D G3DSA:2.120.10.60 166 300 5.5E-6 T 13-10-2018 RAM_17630 aeb310c01d971af69704b9fe6de03a3f 1107 SUPERFAMILY SSF53474 391 645 2.16E-60 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_17630 aeb310c01d971af69704b9fe6de03a3f 1107 Pfam PF00326 Prolyl oligopeptidase family 446 648 1.7E-46 T 13-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 RAM_17305 ce8418e002b32cf347b30422205672ee 299 Pfam PF04072 Leucine carboxyl methyltransferase 12 188 1.4E-49 T 13-10-2018 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp GO:0008168|GO:0032259 RAM_17305 ce8418e002b32cf347b30422205672ee 299 TIGRFAM TIGR00027 mthyl_TIGR00027: methyltransferase, TIGR00027 family 10 263 1.8E-49 T 13-10-2018 IPR011610 S-adenosyl-L-methionine-dependent methyltransferase, putative GO:0008168 RAM_17305 ce8418e002b32cf347b30422205672ee 299 Gene3D G3DSA:3.40.50.150 6 269 1.1E-52 T 13-10-2018 RAM_17305 ce8418e002b32cf347b30422205672ee 299 SUPERFAMILY SSF53335 9 281 1.54E-65 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_27010 b9a9ee67fd62da18fd7b1fd3065b2b8a 146 Pfam PF06172 Cupin superfamily (DUF985) 6 120 8.8E-28 T 13-10-2018 IPR009327 Cupin domain of unknown function DUF985 RAM_27010 b9a9ee67fd62da18fd7b1fd3065b2b8a 146 Gene3D G3DSA:2.60.120.10 2 146 7.5E-37 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_27010 b9a9ee67fd62da18fd7b1fd3065b2b8a 146 SUPERFAMILY SSF51182 3 143 1.87E-34 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RAM_01355 d60b9e75b9f439356e1015c50f26912c 137 Gene3D G3DSA:3.40.50.150 2 116 7.4E-8 T 13-10-2018 RAM_01355 d60b9e75b9f439356e1015c50f26912c 137 SUPERFAMILY SSF53335 2 111 7.47E-14 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_28000 53d6c0f0c88f8e9cbebe14d3be10bfe9 247 Gene3D G3DSA:1.10.10.10 185 245 3.2E-12 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_28000 53d6c0f0c88f8e9cbebe14d3be10bfe9 247 PIRSF PIRSF036625 6 247 5.0E-53 T 13-10-2018 IPR012074 GAF-ANTAR transcription anti-termination regulator, putative RAM_28000 53d6c0f0c88f8e9cbebe14d3be10bfe9 247 Gene3D G3DSA:3.30.450.40 8 184 1.8E-19 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_28000 53d6c0f0c88f8e9cbebe14d3be10bfe9 247 Pfam PF13185 GAF domain 37 171 1.1E-10 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_28000 53d6c0f0c88f8e9cbebe14d3be10bfe9 247 SMART SM01012 183 238 1.2E-21 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 RAM_28000 53d6c0f0c88f8e9cbebe14d3be10bfe9 247 SUPERFAMILY SSF55781 38 182 2.01E-18 T 13-10-2018 RAM_28000 53d6c0f0c88f8e9cbebe14d3be10bfe9 247 Pfam PF03861 ANTAR domain 186 237 3.8E-20 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 RAM_28000 53d6c0f0c88f8e9cbebe14d3be10bfe9 247 SMART SM00065 35 181 4.2E-4 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_02235 74c56bd42be00c29d163aa4d17e96b0c 248 Pfam PF13539 D-alanyl-D-alanine carboxypeptidase 167 247 7.9E-21 T 13-10-2018 IPR039561 Peptidase M15C GO:0008233 RAM_02235 74c56bd42be00c29d163aa4d17e96b0c 248 Gene3D G3DSA:3.30.1380.10 112 246 6.0E-15 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 RAM_02235 74c56bd42be00c29d163aa4d17e96b0c 248 SUPERFAMILY SSF55166 94 246 7.77E-25 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 RAM_20645 6b1822e0cbcdfec9a66a83b6e2d84065 311 TIGRFAM TIGR01840 esterase_phb: esterase, PHB depolymerase family 47 262 9.2E-47 T 13-10-2018 IPR010126 Esterase, PHB depolymerase GO:0005576|GO:0016787 RAM_20645 6b1822e0cbcdfec9a66a83b6e2d84065 311 Pfam PF10503 Esterase PHB depolymerase 48 186 9.9E-23 T 13-10-2018 IPR010126 Esterase, PHB depolymerase GO:0005576|GO:0016787 RAM_20645 6b1822e0cbcdfec9a66a83b6e2d84065 311 SUPERFAMILY SSF53474 30 129 7.07E-11 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_20645 6b1822e0cbcdfec9a66a83b6e2d84065 311 Gene3D G3DSA:3.40.50.1820 18 302 1.2E-50 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_20645 6b1822e0cbcdfec9a66a83b6e2d84065 311 SUPERFAMILY SSF53474 132 309 2.58E-42 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_04570 b7efded000deff46dffd16b061d5ec24 215 Pfam PF00486 Transcriptional regulatory protein, C terminal 143 212 2.3E-14 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_04570 b7efded000deff46dffd16b061d5ec24 215 Gene3D G3DSA:1.10.10.10 120 213 9.2E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_04570 b7efded000deff46dffd16b061d5ec24 215 SUPERFAMILY SSF46894 125 212 2.01E-16 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_04570 b7efded000deff46dffd16b061d5ec24 215 SMART SM00862 143 212 4.5E-17 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_04570 b7efded000deff46dffd16b061d5ec24 215 SMART SM00448 1 110 1.8E-33 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_04570 b7efded000deff46dffd16b061d5ec24 215 Pfam PF00072 Response regulator receiver domain 1 110 5.2E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_04570 b7efded000deff46dffd16b061d5ec24 215 Gene3D G3DSA:3.40.50.2300 1 119 2.3E-35 T 13-10-2018 RAM_04570 b7efded000deff46dffd16b061d5ec24 215 SUPERFAMILY SSF52172 1 116 6.12E-35 T 13-10-2018 IPR011006 CheY-like superfamily RAM_33140 72fb1e7305f2421a3d90f97ca8e64cb1 349 SUPERFAMILY SSF56281 18 278 5.88E-31 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_33140 72fb1e7305f2421a3d90f97ca8e64cb1 349 SMART SM00849 75 248 1.3E-11 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_33140 72fb1e7305f2421a3d90f97ca8e64cb1 349 Pfam PF00753 Metallo-beta-lactamase superfamily 78 220 1.5E-7 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_33140 72fb1e7305f2421a3d90f97ca8e64cb1 349 Gene3D G3DSA:3.60.15.10 60 276 3.9E-31 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_30965 02274729f478f7076d6a4bca29623465 170 Hamap MF_00173 Arginine repressor [argR]. 1 160 59.617 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 RAM_30965 02274729f478f7076d6a4bca29623465 170 TIGRFAM TIGR01529 argR_whole: arginine repressor 7 156 7.8E-45 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 RAM_30965 02274729f478f7076d6a4bca29623465 170 Pfam PF02863 Arginine repressor, C-terminal domain 88 153 2.0E-24 T 13-10-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 RAM_30965 02274729f478f7076d6a4bca29623465 170 PRINTS PR01467 Bacterial arginine repressor signature 126 141 7.3E-26 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 RAM_30965 02274729f478f7076d6a4bca29623465 170 PRINTS PR01467 Bacterial arginine repressor signature 39 54 7.3E-26 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 RAM_30965 02274729f478f7076d6a4bca29623465 170 PRINTS PR01467 Bacterial arginine repressor signature 23 36 7.3E-26 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 RAM_30965 02274729f478f7076d6a4bca29623465 170 PRINTS PR01467 Bacterial arginine repressor signature 96 109 7.3E-26 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 RAM_30965 02274729f478f7076d6a4bca29623465 170 Pfam PF01316 Arginine repressor, DNA binding domain 5 72 5.0E-22 T 13-10-2018 IPR020900 Arginine repressor, DNA-binding domain GO:0003700|GO:0006355|GO:0006525 RAM_30965 02274729f478f7076d6a4bca29623465 170 ProDom PD007402 ARGININE REPRESSOR TRANSCRIPTION BIOSYNTHESIS DNA-BINDING REGULATION AMINO-ACID ARGR TRANSCRIPTIONAL FAMILY 96 153 3.0E-17 T 13-10-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 RAM_30965 02274729f478f7076d6a4bca29623465 170 SUPERFAMILY SSF55252 88 154 4.58E-17 T 13-10-2018 IPR036251 Arginine repressor, C-terminal domain superfamily GO:0034618|GO:0051259 RAM_30965 02274729f478f7076d6a4bca29623465 170 SUPERFAMILY SSF46785 4 72 9.07E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_30965 02274729f478f7076d6a4bca29623465 170 Gene3D G3DSA:3.30.1360.40 79 157 9.5E-30 T 13-10-2018 RAM_30965 02274729f478f7076d6a4bca29623465 170 Gene3D G3DSA:1.10.10.10 1 76 3.6E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_09665 32653585f815df4382f4cf957602ba68 521 Pfam PF00474 Sodium:solute symporter family 33 437 1.1E-32 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 RAM_09665 32653585f815df4382f4cf957602ba68 521 Gene3D G3DSA:1.20.1730.10 23 515 7.9E-95 T 13-10-2018 IPR038377 Sodium/glucose symporter superfamily RAM_20970 65d85be43851b95c4967cc29f8adeb69 346 SUPERFAMILY SSF55961 109 344 4.67E-36 T 13-10-2018 RAM_20970 65d85be43851b95c4967cc29f8adeb69 346 Gene3D G3DSA:2.102.10.10 2 130 8.2E-32 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RAM_20970 65d85be43851b95c4967cc29f8adeb69 346 Pfam PF00355 Rieske [2Fe-2S] domain 8 93 9.0E-16 T 13-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RAM_20970 65d85be43851b95c4967cc29f8adeb69 346 Gene3D G3DSA:3.30.530.90 133 344 4.2E-59 T 13-10-2018 RAM_20970 65d85be43851b95c4967cc29f8adeb69 346 SUPERFAMILY SSF50022 2 120 5.76E-31 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RAM_14005 77bfaae6f071fc94d91b247fabb20e27 218 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 29 206 4.1E-67 T 13-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 RAM_14005 77bfaae6f071fc94d91b247fabb20e27 218 ProSitePatterns PS00856 Guanylate kinase-like signature. 62 79 - T 13-10-2018 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 RAM_14005 77bfaae6f071fc94d91b247fabb20e27 218 Hamap MF_00328 Guanylate kinase [gmk]. 26 209 34.939 T 13-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 RAM_14005 77bfaae6f071fc94d91b247fabb20e27 218 Gene3D G3DSA:3.30.63.10 59 118 4.7E-63 T 13-10-2018 RAM_14005 77bfaae6f071fc94d91b247fabb20e27 218 SMART SM00072 27 209 1.0E-64 T 13-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit RAM_14005 77bfaae6f071fc94d91b247fabb20e27 218 Pfam PF00625 Guanylate kinase 28 206 4.0E-43 T 13-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit RAM_14005 77bfaae6f071fc94d91b247fabb20e27 218 SUPERFAMILY SSF52540 27 209 8.47E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_14005 77bfaae6f071fc94d91b247fabb20e27 218 Gene3D G3DSA:3.40.50.300 32 205 4.7E-63 T 13-10-2018 RAM_13570 988892b2e30baab49ce185fbb83dc876 359 Gene3D G3DSA:2.40.50.140 198 336 2.0E-26 T 13-10-2018 RAM_13570 988892b2e30baab49ce185fbb83dc876 359 SUPERFAMILY SSF50249 199 337 8.91E-13 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_13570 988892b2e30baab49ce185fbb83dc876 359 Pfam PF04679 ATP dependent DNA ligase C terminal region 218 329 6.5E-16 T 13-10-2018 IPR012309 DNA ligase, ATP-dependent, C-terminal GO:0003910|GO:0006281|GO:0006310 RAM_13570 988892b2e30baab49ce185fbb83dc876 359 Gene3D G3DSA:3.30.470.30 8 196 4.6E-36 T 13-10-2018 RAM_13570 988892b2e30baab49ce185fbb83dc876 359 Pfam PF01068 ATP dependent DNA ligase domain 11 196 8.9E-30 T 13-10-2018 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 RAM_13570 988892b2e30baab49ce185fbb83dc876 359 SUPERFAMILY SSF56091 7 196 1.22E-39 T 13-10-2018 RAM_13570 988892b2e30baab49ce185fbb83dc876 359 ProSitePatterns PS00697 ATP-dependent DNA ligase AMP-binding site. 29 37 - T 13-10-2018 IPR016059 DNA ligase, ATP-dependent, conserved site GO:0003909|GO:0051103 RAM_12025 77f7c63728aae9582cb5113cdf5323be 223 SMART SM00862 144 216 1.9E-21 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_12025 77f7c63728aae9582cb5113cdf5323be 223 SMART SM00448 1 109 5.9E-32 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_12025 77f7c63728aae9582cb5113cdf5323be 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 144 216 5.1E-22 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_12025 77f7c63728aae9582cb5113cdf5323be 223 SUPERFAMILY SSF52172 2 178 1.46E-32 T 13-10-2018 IPR011006 CheY-like superfamily RAM_12025 77f7c63728aae9582cb5113cdf5323be 223 Pfam PF00072 Response regulator receiver domain 3 110 7.2E-23 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_12025 77f7c63728aae9582cb5113cdf5323be 223 Gene3D G3DSA:1.10.10.10 122 222 2.7E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_12025 77f7c63728aae9582cb5113cdf5323be 223 Gene3D G3DSA:3.40.50.2300 1 119 1.3E-30 T 13-10-2018 RAM_25270 bf816ea7da9a2aadcb929a705bf6a993 419 SUPERFAMILY SSF55931 36 390 2.26E-34 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 RAM_25270 bf816ea7da9a2aadcb929a705bf6a993 419 Pfam PF04107 Glutamate-cysteine ligase family 2(GCS2) 84 348 2.3E-46 T 13-10-2018 IPR006336 Glutamate--cysteine ligase, GCS2 GO:0004357|GO:0042398 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 RAM_25270 bf816ea7da9a2aadcb929a705bf6a993 419 TIGRFAM TIGR03444 EgtA_Cys_ligase: ergothioneine biosynthesis glutamate--cysteine ligase EgtA 32 407 9.4E-112 T 13-10-2018 IPR017809 Glutamate--cysteine ligase EgtA, Actinobacteria GO:0004357|GO:0052699 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 RAM_25270 bf816ea7da9a2aadcb929a705bf6a993 419 PIRSF PIRSF017901 4 419 7.0E-90 T 13-10-2018 IPR035434 Glutamate--cysteine ligase, bacteria and plant GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 RAM_25270 bf816ea7da9a2aadcb929a705bf6a993 419 Hamap MF_02034 Glutamate--cysteine ligase EgtA [egtA]. 20 419 30.227 T 13-10-2018 IPR017809 Glutamate--cysteine ligase EgtA, Actinobacteria GO:0004357|GO:0052699 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 RAM_25270 bf816ea7da9a2aadcb929a705bf6a993 419 Gene3D G3DSA:3.30.590.20 22 417 7.8E-90 T 13-10-2018 RAM_35100 51428c437399f502e1109060011d8011 391 Gene3D G3DSA:2.40.110.10 112 205 2.5E-26 T 13-10-2018 RAM_35100 51428c437399f502e1109060011d8011 391 SUPERFAMILY SSF56645 14 205 7.72E-35 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_35100 51428c437399f502e1109060011d8011 391 SUPERFAMILY SSF47203 230 366 7.42E-9 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_35100 51428c437399f502e1109060011d8011 391 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 23 82 4.0E-7 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_35100 51428c437399f502e1109060011d8011 391 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 240 368 5.1E-27 T 13-10-2018 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain RAM_35100 51428c437399f502e1109060011d8011 391 PIRSF PIRSF016578 1 391 1.7E-123 T 13-10-2018 RAM_35100 51428c437399f502e1109060011d8011 391 Gene3D G3DSA:1.20.140.10 210 390 6.9E-37 T 13-10-2018 RAM_35100 51428c437399f502e1109060011d8011 391 Gene3D G3DSA:1.10.540.10 3 111 9.4E-30 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_35080 f8a7e26d0b8ee1ba472795489b0e2b43 458 Gene3D G3DSA:3.40.640.10 73 346 6.3E-137 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_35080 f8a7e26d0b8ee1ba472795489b0e2b43 458 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 260 297 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RAM_35080 f8a7e26d0b8ee1ba472795489b0e2b43 458 SUPERFAMILY SSF53383 33 448 5.76E-110 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_35080 f8a7e26d0b8ee1ba472795489b0e2b43 458 Gene3D G3DSA:3.90.1150.10 25 443 6.3E-137 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_35080 f8a7e26d0b8ee1ba472795489b0e2b43 458 PIRSF PIRSF000521 4 450 1.7E-23 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RAM_35080 f8a7e26d0b8ee1ba472795489b0e2b43 458 Pfam PF00202 Aminotransferase class-III 35 446 4.4E-85 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RAM_12245 663b793283d649c5857fac6ee038b054 599 SUPERFAMILY SSF53474 27 396 2.93E-76 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_12245 663b793283d649c5857fac6ee038b054 599 SMART SM00939 368 584 4.2E-37 T 13-10-2018 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 RAM_12245 663b793283d649c5857fac6ee038b054 599 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 60 353 4.3E-64 T 13-10-2018 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 RAM_12245 663b793283d649c5857fac6ee038b054 599 Gene3D G3DSA:3.40.50.1820 289 419 4.2E-34 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_12245 663b793283d649c5857fac6ee038b054 599 Gene3D G3DSA:3.40.50.1820 44 270 1.3E-56 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_12245 663b793283d649c5857fac6ee038b054 599 Pfam PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain 380 581 6.1E-38 T 13-10-2018 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 RAM_12245 663b793283d649c5857fac6ee038b054 599 Gene3D G3DSA:2.60.120.260 436 588 1.4E-37 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_12245 663b793283d649c5857fac6ee038b054 599 PRINTS PR00923 Lactococcus X-Pro dipeptidyl-peptidase (S15) family signature 232 248 1.1E-12 T 13-10-2018 IPR008252 Peptidase S15, X-Pro dipeptidyl-peptidase GO:0004177|GO:0006508 RAM_12245 663b793283d649c5857fac6ee038b054 599 PRINTS PR00923 Lactococcus X-Pro dipeptidyl-peptidase (S15) family signature 64 73 1.1E-12 T 13-10-2018 IPR008252 Peptidase S15, X-Pro dipeptidyl-peptidase GO:0004177|GO:0006508 RAM_12245 663b793283d649c5857fac6ee038b054 599 PRINTS PR00923 Lactococcus X-Pro dipeptidyl-peptidase (S15) family signature 46 56 1.1E-12 T 13-10-2018 IPR008252 Peptidase S15, X-Pro dipeptidyl-peptidase GO:0004177|GO:0006508 RAM_12245 663b793283d649c5857fac6ee038b054 599 PRINTS PR00923 Lactococcus X-Pro dipeptidyl-peptidase (S15) family signature 552 567 1.1E-12 T 13-10-2018 IPR008252 Peptidase S15, X-Pro dipeptidyl-peptidase GO:0004177|GO:0006508 RAM_12245 663b793283d649c5857fac6ee038b054 599 PRINTS PR00923 Lactococcus X-Pro dipeptidyl-peptidase (S15) family signature 30 42 1.1E-12 T 13-10-2018 IPR008252 Peptidase S15, X-Pro dipeptidyl-peptidase GO:0004177|GO:0006508 RAM_12245 663b793283d649c5857fac6ee038b054 599 SUPERFAMILY SSF49785 453 589 4.46E-33 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_28740 824b0ecd33c90dbeb1525276d0e76562 395 SUPERFAMILY SSF48264 18 395 3.27E-89 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_28740 824b0ecd33c90dbeb1525276d0e76562 395 Gene3D G3DSA:1.10.630.10 6 395 5.3E-122 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_28740 824b0ecd33c90dbeb1525276d0e76562 395 Pfam PF00067 Cytochrome P450 174 366 4.8E-25 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_28740 824b0ecd33c90dbeb1525276d0e76562 395 PRINTS PR00359 B-class P450 signature 84 95 2.9E-55 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_28740 824b0ecd33c90dbeb1525276d0e76562 395 PRINTS PR00359 B-class P450 signature 313 328 2.9E-55 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_28740 824b0ecd33c90dbeb1525276d0e76562 395 PRINTS PR00359 B-class P450 signature 344 355 2.9E-55 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_28740 824b0ecd33c90dbeb1525276d0e76562 395 PRINTS PR00359 B-class P450 signature 131 147 2.9E-55 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_28740 824b0ecd33c90dbeb1525276d0e76562 395 PRINTS PR00359 B-class P450 signature 285 312 2.9E-55 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_28740 824b0ecd33c90dbeb1525276d0e76562 395 PRINTS PR00359 B-class P450 signature 148 163 2.9E-55 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_28740 824b0ecd33c90dbeb1525276d0e76562 395 PRINTS PR00359 B-class P450 signature 267 278 2.9E-55 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_28740 824b0ecd33c90dbeb1525276d0e76562 395 PRINTS PR00359 B-class P450 signature 186 208 2.9E-55 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_28740 824b0ecd33c90dbeb1525276d0e76562 395 PRINTS PR00359 B-class P450 signature 335 344 2.9E-55 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_47470 4145f0184597f14b421813eb50abf7f4 87 Gene3D G3DSA:2.30.22.10 26 87 4.7E-11 T 13-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 RAM_47470 4145f0184597f14b421813eb50abf7f4 87 Pfam PF01025 GrpE 16 81 7.3E-10 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 RAM_47470 4145f0184597f14b421813eb50abf7f4 87 SUPERFAMILY SSF51064 27 84 5.89E-9 T 13-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 RAM_06965 854228acf3045a8e255ecc6a77c38fac 1027 Pfam PF03704 Bacterial transcriptional activator domain 95 234 6.9E-36 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_06965 854228acf3045a8e255ecc6a77c38fac 1027 SMART SM01043 94 234 2.8E-40 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_06965 854228acf3045a8e255ecc6a77c38fac 1027 Pfam PF00486 Transcriptional regulatory protein, C terminal 23 82 2.5E-9 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_06965 854228acf3045a8e255ecc6a77c38fac 1027 SMART SM00028 772 805 0.53 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_06965 854228acf3045a8e255ecc6a77c38fac 1027 SMART SM00028 892 925 63.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_06965 854228acf3045a8e255ecc6a77c38fac 1027 SMART SM00028 692 725 210.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_06965 854228acf3045a8e255ecc6a77c38fac 1027 SMART SM00028 732 765 2.9 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_06965 854228acf3045a8e255ecc6a77c38fac 1027 SMART SM00028 184 217 340.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_06965 854228acf3045a8e255ecc6a77c38fac 1027 SMART SM00028 812 845 470.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_06965 854228acf3045a8e255ecc6a77c38fac 1027 SMART SM00028 852 885 98.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_06965 854228acf3045a8e255ecc6a77c38fac 1027 SMART SM00028 972 1005 500.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_06965 854228acf3045a8e255ecc6a77c38fac 1027 Gene3D G3DSA:3.40.50.300 252 400 1.5E-23 T 13-10-2018 RAM_06965 854228acf3045a8e255ecc6a77c38fac 1027 SMART SM00862 15 87 2.4E-10 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_06965 854228acf3045a8e255ecc6a77c38fac 1027 SUPERFAMILY SSF48452 682 807 2.7E-15 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_06965 854228acf3045a8e255ecc6a77c38fac 1027 SUPERFAMILY SSF52540 261 507 4.5E-23 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_06965 854228acf3045a8e255ecc6a77c38fac 1027 SUPERFAMILY SSF48452 90 253 1.23E-31 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_06965 854228acf3045a8e255ecc6a77c38fac 1027 Gene3D G3DSA:1.25.40.10 638 766 1.6E-10 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_06965 854228acf3045a8e255ecc6a77c38fac 1027 SUPERFAMILY SSF46894 2 87 3.12E-14 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_06965 854228acf3045a8e255ecc6a77c38fac 1027 Gene3D G3DSA:1.25.40.10 93 251 2.0E-44 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_06965 854228acf3045a8e255ecc6a77c38fac 1027 Gene3D G3DSA:1.25.40.10 767 1026 1.2E-30 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_06965 854228acf3045a8e255ecc6a77c38fac 1027 Pfam PF00931 NB-ARC domain 276 511 1.2E-6 T 13-10-2018 IPR002182 NB-ARC GO:0043531 Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-6798695|Reactome: R-HSA-6803207|Reactome: R-HSA-8953750 RAM_06965 854228acf3045a8e255ecc6a77c38fac 1027 Gene3D G3DSA:1.10.10.10 1 90 1.3E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_06965 854228acf3045a8e255ecc6a77c38fac 1027 Pfam PF13424 Tetratricopeptide repeat 736 804 4.6E-11 T 13-10-2018 RAM_06965 854228acf3045a8e255ecc6a77c38fac 1027 SUPERFAMILY SSF48452 892 1003 1.47E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_06965 854228acf3045a8e255ecc6a77c38fac 1027 SUPERFAMILY SSF48452 772 927 7.78E-20 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_07060 8a434fd87b8a0f3a42049130ed42db62 298 ProSitePatterns PS00211 ABC transporters family signature. 124 138 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_07060 8a434fd87b8a0f3a42049130ed42db62 298 Pfam PF00005 ABC transporter 16 152 1.1E-23 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_07060 8a434fd87b8a0f3a42049130ed42db62 298 SMART SM00382 25 243 6.7E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_07060 8a434fd87b8a0f3a42049130ed42db62 298 Gene3D G3DSA:3.40.50.300 1 223 4.4E-51 T 13-10-2018 RAM_07060 8a434fd87b8a0f3a42049130ed42db62 298 SUPERFAMILY SSF52540 3 215 6.88E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_08435 977451dee999653f4913067686f65c11 398 SUPERFAMILY SSF53383 1 377 2.82E-95 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_08435 977451dee999653f4913067686f65c11 398 Gene3D G3DSA:3.90.1150.10 3 371 4.3E-145 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_08435 977451dee999653f4913067686f65c11 398 Gene3D G3DSA:3.40.640.10 13 260 4.3E-145 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_08435 977451dee999653f4913067686f65c11 398 PIRSF PIRSF005572 1 384 2.6E-118 T 13-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 RAM_08435 977451dee999653f4913067686f65c11 398 Pfam PF00266 Aminotransferase class-V 3 370 1.6E-65 T 13-10-2018 IPR000192 Aminotransferase class V domain RAM_43335 bf10f53f4e6adac6158e658ddffea768 225 PIRSF PIRSF000190 11 225 1.8E-77 T 13-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RAM_43335 bf10f53f4e6adac6158e658ddffea768 225 Gene3D G3DSA:2.30.110.10 23 225 1.4E-78 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_43335 bf10f53f4e6adac6158e658ddffea768 225 SUPERFAMILY SSF50475 27 225 8.68E-65 T 13-10-2018 RAM_43335 bf10f53f4e6adac6158e658ddffea768 225 TIGRFAM TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase 13 225 2.7E-74 T 13-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RAM_43335 bf10f53f4e6adac6158e658ddffea768 225 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 46 127 2.5E-21 T 13-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RAM_43335 bf10f53f4e6adac6158e658ddffea768 225 ProSitePatterns PS01064 Pyridoxamine 5'-phosphate oxidase signature. 195 208 - T 13-10-2018 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RAM_43335 bf10f53f4e6adac6158e658ddffea768 225 Hamap MF_01629 Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 22 225 36.489 T 13-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RAM_43335 bf10f53f4e6adac6158e658ddffea768 225 Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 185 225 1.0E-18 T 13-10-2018 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RAM_33080 8db0051bdd9e9097900726c405d08d2a 325 Pfam PF01636 Phosphotransferase enzyme family 85 266 4.5E-12 T 13-10-2018 IPR002575 Aminoglycoside phosphotransferase RAM_33080 8db0051bdd9e9097900726c405d08d2a 325 Gene3D G3DSA:3.90.1200.10 86 260 4.1E-8 T 13-10-2018 RAM_33080 8db0051bdd9e9097900726c405d08d2a 325 SUPERFAMILY SSF56112 9 312 2.43E-18 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_33080 8db0051bdd9e9097900726c405d08d2a 325 Gene3D G3DSA:3.30.200.150 102 126 4.1E-8 T 13-10-2018 RAM_35055 18600c5e19ac844ae51b0403588bdd72 212 Gene3D G3DSA:3.40.50.1240 1 208 6.1E-42 T 13-10-2018 IPR029033 Histidine phosphatase superfamily RAM_35055 18600c5e19ac844ae51b0403588bdd72 212 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 197 1.0E-35 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 RAM_35055 18600c5e19ac844ae51b0403588bdd72 212 SMART SM00855 2 160 3.7E-17 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 RAM_35055 18600c5e19ac844ae51b0403588bdd72 212 PIRSF PIRSF000709 2 185 1.8E-6 T 13-10-2018 RAM_35055 18600c5e19ac844ae51b0403588bdd72 212 SUPERFAMILY SSF53254 2 193 5.3E-39 T 13-10-2018 IPR029033 Histidine phosphatase superfamily RAM_20840 dddf8ac7e88e1a0586ab28e166b5e3f4 199 Gene3D G3DSA:1.10.357.10 6 198 2.6E-33 T 13-10-2018 RAM_20840 dddf8ac7e88e1a0586ab28e166b5e3f4 199 SUPERFAMILY SSF46689 5 84 4.46E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_20840 dddf8ac7e88e1a0586ab28e166b5e3f4 199 SUPERFAMILY SSF48498 81 196 1.66E-20 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_20840 dddf8ac7e88e1a0586ab28e166b5e3f4 199 Pfam PF13977 BetI-type transcriptional repressor, C-terminal 85 189 1.5E-13 T 13-10-2018 IPR039538 BetI-type transcriptional repressor, C-terminal RAM_20840 dddf8ac7e88e1a0586ab28e166b5e3f4 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 40 63 1.2E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_20840 dddf8ac7e88e1a0586ab28e166b5e3f4 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 19 32 1.2E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_20840 dddf8ac7e88e1a0586ab28e166b5e3f4 199 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 64 1.4E-12 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_20105 65b99716f62b3266a953d41771befd5a 131 ProSitePatterns PS00552 MerR-type HTH domain signature. 4 26 - T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_20105 65b99716f62b3266a953d41771befd5a 131 Pfam PF13411 MerR HTH family regulatory protein 2 67 1.2E-16 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_20105 65b99716f62b3266a953d41771befd5a 131 SMART SM00422 1 69 4.2E-17 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_20105 65b99716f62b3266a953d41771befd5a 131 SUPERFAMILY SSF46955 2 112 2.97E-25 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily RAM_20105 65b99716f62b3266a953d41771befd5a 131 Gene3D G3DSA:1.10.1660.10 1 121 7.7E-29 T 13-10-2018 RAM_20105 65b99716f62b3266a953d41771befd5a 131 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 1.1E-10 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_20105 65b99716f62b3266a953d41771befd5a 131 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 36 56 1.1E-10 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_20105 65b99716f62b3266a953d41771befd5a 131 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 1.1E-10 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_16015 0572cc967507dd859567ba584a22f861 279 Pfam PF03704 Bacterial transcriptional activator domain 93 232 2.1E-18 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_16015 0572cc967507dd859567ba584a22f861 279 Pfam PF00486 Transcriptional regulatory protein, C terminal 13 85 1.4E-9 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_16015 0572cc967507dd859567ba584a22f861 279 Gene3D G3DSA:1.25.40.10 92 259 9.5E-29 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_16015 0572cc967507dd859567ba584a22f861 279 SUPERFAMILY SSF46894 9 86 5.67E-11 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_16015 0572cc967507dd859567ba584a22f861 279 SMART SM00862 6 86 2.0E-8 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_16015 0572cc967507dd859567ba584a22f861 279 SMART SM01043 93 237 3.4E-28 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_16015 0572cc967507dd859567ba584a22f861 279 Gene3D G3DSA:1.10.10.10 1 88 8.8E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_16015 0572cc967507dd859567ba584a22f861 279 SUPERFAMILY SSF48452 90 246 1.36E-22 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_26945 b15364fa9e8d8aabed65110786ecbbf2 340 ProSitePatterns PS00622 LuxR-type HTH domain signature. 298 325 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_26945 b15364fa9e8d8aabed65110786ecbbf2 340 SMART SM00421 281 338 1.5E-16 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_26945 b15364fa9e8d8aabed65110786ecbbf2 340 SUPERFAMILY SSF46894 275 338 8.84E-16 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_26945 b15364fa9e8d8aabed65110786ecbbf2 340 Gene3D G3DSA:1.10.10.10 280 339 1.5E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_26945 b15364fa9e8d8aabed65110786ecbbf2 340 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 298 314 6.7E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_26945 b15364fa9e8d8aabed65110786ecbbf2 340 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 284 298 6.7E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_26945 b15364fa9e8d8aabed65110786ecbbf2 340 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 314 326 6.7E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_26945 b15364fa9e8d8aabed65110786ecbbf2 340 Pfam PF00196 Bacterial regulatory proteins, luxR family 284 336 6.7E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_03670 44dc34cc20cc5df3a535f2f940ca80f3 1337 SUPERFAMILY SSF52540 441 702 4.69E-24 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_03670 44dc34cc20cc5df3a535f2f940ca80f3 1337 TIGRFAM TIGR03924 T7SS_EccC_a: type VII secretion protein EccCa 24 699 9.8E-287 T 13-10-2018 IPR023836 EccCa-like, Actinobacteria RAM_03670 44dc34cc20cc5df3a535f2f940ca80f3 1337 Pfam PF01580 FtsK/SpoIIIE family 450 567 3.4E-23 T 13-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 RAM_03670 44dc34cc20cc5df3a535f2f940ca80f3 1337 Pfam PF01580 FtsK/SpoIIIE family 816 1052 8.4E-54 T 13-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 RAM_03670 44dc34cc20cc5df3a535f2f940ca80f3 1337 Gene3D G3DSA:3.40.50.300 1100 1335 1.4E-48 T 13-10-2018 RAM_03670 44dc34cc20cc5df3a535f2f940ca80f3 1337 Gene3D G3DSA:3.40.50.300 225 380 4.6E-12 T 13-10-2018 RAM_03670 44dc34cc20cc5df3a535f2f940ca80f3 1337 Gene3D G3DSA:3.40.50.300 781 1091 5.5E-90 T 13-10-2018 RAM_03670 44dc34cc20cc5df3a535f2f940ca80f3 1337 SUPERFAMILY SSF52540 776 1027 1.24E-23 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_03670 44dc34cc20cc5df3a535f2f940ca80f3 1337 TIGRFAM TIGR03925 T7SS_EccC_b: type VII secretion protein EccCb 759 1331 1.1E-230 T 13-10-2018 IPR023837 EccCb-like, Actinobacteria RAM_03670 44dc34cc20cc5df3a535f2f940ca80f3 1337 SUPERFAMILY SSF52540 1078 1266 1.31E-6 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_33985 d5402df8102b69f2516ab049e1549cd9 190 Pfam PF02130 Uncharacterized protein family UPF0054 14 147 5.2E-35 T 13-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 RAM_33985 d5402df8102b69f2516ab049e1549cd9 190 Gene3D G3DSA:3.40.390.30 1 155 2.6E-35 T 13-10-2018 IPR023091 Metalloprotease catalytic domain superfamily, predicted GO:0004222 RAM_33985 d5402df8102b69f2516ab049e1549cd9 190 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 118 128 - T 13-10-2018 IPR020549 Endoribonuclease YbeY, conserved site RAM_33985 d5402df8102b69f2516ab049e1549cd9 190 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 36 148 3.8E-30 T 13-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 RAM_33985 d5402df8102b69f2516ab049e1549cd9 190 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 2 157 20.023 T 13-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 RAM_33985 d5402df8102b69f2516ab049e1549cd9 190 SUPERFAMILY SSF55486 5 148 1.42E-36 T 13-10-2018 RAM_44875 7fb40c6bd924822a8b76f8d4b82f4d34 265 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 34 47 - T 13-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_44875 7fb40c6bd924822a8b76f8d4b82f4d34 265 Pfam PF00809 Pterin binding enzyme 1 246 6.5E-91 T 13-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_44875 7fb40c6bd924822a8b76f8d4b82f4d34 265 SUPERFAMILY SSF51717 1 262 9.55E-94 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_44875 7fb40c6bd924822a8b76f8d4b82f4d34 265 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 1 260 3.6E-93 T 13-10-2018 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 RAM_44875 7fb40c6bd924822a8b76f8d4b82f4d34 265 Gene3D G3DSA:3.20.20.20 1 264 7.4E-109 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_07550 38f8f78a2b4cd18787362bad8f554d58 791 SMART SM00421 724 781 7.2E-19 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_07550 38f8f78a2b4cd18787362bad8f554d58 791 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 757 769 1.0E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_07550 38f8f78a2b4cd18787362bad8f554d58 791 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 741 757 1.0E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_07550 38f8f78a2b4cd18787362bad8f554d58 791 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 727 741 1.0E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_07550 38f8f78a2b4cd18787362bad8f554d58 791 Pfam PF00196 Bacterial regulatory proteins, luxR family 726 778 1.9E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_07550 38f8f78a2b4cd18787362bad8f554d58 791 Gene3D G3DSA:1.10.10.10 627 790 3.2E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_07550 38f8f78a2b4cd18787362bad8f554d58 791 SUPERFAMILY SSF46894 721 783 4.08E-16 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_41075 95c38db55334443cb53105a41f7dcf5d 104 SUPERFAMILY SSF50022 2 98 2.75E-28 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RAM_41075 95c38db55334443cb53105a41f7dcf5d 104 Pfam PF00355 Rieske [2Fe-2S] domain 3 84 3.4E-15 T 13-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RAM_41075 95c38db55334443cb53105a41f7dcf5d 104 Gene3D G3DSA:2.102.10.10 1 100 1.3E-34 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RAM_45870 814606ab69d55d81332a45bd9c621929 564 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 144 160 1.5E-10 T 13-10-2018 RAM_45870 814606ab69d55d81332a45bd9c621929 564 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 261 285 1.5E-10 T 13-10-2018 RAM_45870 814606ab69d55d81332a45bd9c621929 564 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 227 239 1.5E-10 T 13-10-2018 RAM_45870 814606ab69d55d81332a45bd9c621929 564 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 166 180 1.5E-10 T 13-10-2018 RAM_45870 814606ab69d55d81332a45bd9c621929 564 SUPERFAMILY SSF53335 128 357 5.92E-40 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_45870 814606ab69d55d81332a45bd9c621929 564 Gene3D G3DSA:3.40.50.150 127 344 1.6E-36 T 13-10-2018 RAM_45870 814606ab69d55d81332a45bd9c621929 564 Pfam PF02384 N-6 DNA Methylase 148 314 4.5E-26 T 13-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 RAM_23010 f2b79cec04e7b0d014c00479cef74614 468 SUPERFAMILY SSF56176 17 183 3.74E-27 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RAM_23010 f2b79cec04e7b0d014c00479cef74614 468 Gene3D G3DSA:3.30.465.10 61 184 4.8E-29 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 RAM_23010 f2b79cec04e7b0d014c00479cef74614 468 Pfam PF01565 FAD binding domain 48 149 4.4E-13 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RAM_23010 f2b79cec04e7b0d014c00479cef74614 468 SUPERFAMILY SSF55103 162 456 3.71E-7 T 13-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 RAM_11260 8b3760de5447f3fb10c892ae1e33ad16 204 Gene3D G3DSA:3.40.50.300 10 193 9.0E-17 T 13-10-2018 RAM_11260 8b3760de5447f3fb10c892ae1e33ad16 204 SUPERFAMILY SSF52540 43 194 1.85E-5 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_04580 35f572b3eee7600fb3b89bb565e292db 424 SUPERFAMILY SSF48371 46 310 1.04E-6 T 13-10-2018 IPR016024 Armadillo-type fold RAM_04580 35f572b3eee7600fb3b89bb565e292db 424 Gene3D G3DSA:1.25.10.10 242 381 8.6E-6 T 13-10-2018 IPR011989 Armadillo-like helical RAM_02850 fc10a25bdea8e6b2e5de9384e81beecd 389 Pfam PF00534 Glycosyl transferases group 1 215 363 3.4E-27 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 RAM_02850 fc10a25bdea8e6b2e5de9384e81beecd 389 SUPERFAMILY SSF53756 2 387 3.93E-61 T 13-10-2018 RAM_02850 fc10a25bdea8e6b2e5de9384e81beecd 389 Pfam PF13439 Glycosyltransferase Family 4 17 203 3.9E-15 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 RAM_30190 d8415eb0393c74c0289ed07d20b2e422 239 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 11 209 1.5E-35 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 RAM_30190 d8415eb0393c74c0289ed07d20b2e422 239 PIRSF PIRSF000709 10 179 1.5E-16 T 13-10-2018 RAM_30190 d8415eb0393c74c0289ed07d20b2e422 239 Gene3D G3DSA:3.40.50.1240 8 226 2.5E-41 T 13-10-2018 IPR029033 Histidine phosphatase superfamily RAM_30190 d8415eb0393c74c0289ed07d20b2e422 239 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 10 19 - T 13-10-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824 RAM_30190 d8415eb0393c74c0289ed07d20b2e422 239 SMART SM00855 10 173 1.3E-7 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 RAM_30190 d8415eb0393c74c0289ed07d20b2e422 239 SUPERFAMILY SSF53254 10 223 3.05E-43 T 13-10-2018 IPR029033 Histidine phosphatase superfamily RAM_30165 5f6a25a0d5f7519bf578be4920138ace 744 ProSitePatterns PS00591 Glycosyl hydrolases family 10 (GH10) active site. 557 567 - T 13-10-2018 IPR031158 Glycosyl hydrolases family 10, active site MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_30165 5f6a25a0d5f7519bf578be4920138ace 744 Pfam PF10503 Esterase PHB depolymerase 51 254 1.6E-18 T 13-10-2018 IPR010126 Esterase, PHB depolymerase GO:0005576|GO:0016787 RAM_30165 5f6a25a0d5f7519bf578be4920138ace 744 SUPERFAMILY SSF53474 27 108 2.39E-8 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_30165 5f6a25a0d5f7519bf578be4920138ace 744 SUPERFAMILY SSF53474 132 335 5.81E-44 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_30165 5f6a25a0d5f7519bf578be4920138ace 744 SUPERFAMILY SSF51445 329 632 8.52E-107 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_30165 5f6a25a0d5f7519bf578be4920138ace 744 TIGRFAM TIGR01840 esterase_phb: esterase, PHB depolymerase family 48 261 6.7E-43 T 13-10-2018 IPR010126 Esterase, PHB depolymerase GO:0005576|GO:0016787 RAM_30165 5f6a25a0d5f7519bf578be4920138ace 744 Gene3D G3DSA:3.40.50.1820 19 338 1.5E-48 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_30165 5f6a25a0d5f7519bf578be4920138ace 744 SUPERFAMILY SSF49384 656 741 3.7E-15 T 13-10-2018 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily GO:0030246 RAM_30165 5f6a25a0d5f7519bf578be4920138ace 744 PRINTS PR00134 Glycosyl hydrolase family 10 signature 523 535 7.9E-16 T 13-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_30165 5f6a25a0d5f7519bf578be4920138ace 744 PRINTS PR00134 Glycosyl hydrolase family 10 signature 493 504 7.9E-16 T 13-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_30165 5f6a25a0d5f7519bf578be4920138ace 744 PRINTS PR00134 Glycosyl hydrolase family 10 signature 406 418 7.9E-16 T 13-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_30165 5f6a25a0d5f7519bf578be4920138ace 744 PRINTS PR00134 Glycosyl hydrolase family 10 signature 448 459 7.9E-16 T 13-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_30165 5f6a25a0d5f7519bf578be4920138ace 744 Pfam PF00331 Glycosyl hydrolase family 10 334 629 6.5E-107 T 13-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_30165 5f6a25a0d5f7519bf578be4920138ace 744 SMART SM00637 658 741 8.8E-14 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_30165 5f6a25a0d5f7519bf578be4920138ace 744 SMART SM00633 375 631 2.1E-131 T 13-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_30165 5f6a25a0d5f7519bf578be4920138ace 744 Gene3D G3DSA:3.20.20.80 339 636 5.7E-108 T 13-10-2018 RAM_30165 5f6a25a0d5f7519bf578be4920138ace 744 Gene3D G3DSA:2.60.40.290 655 743 6.3E-20 T 13-10-2018 IPR012291 CBM2, carbohydrate-binding domain superfamily GO:0004553|GO:0030247 RAM_17260 019da1828f8eabea4bcb10ad5337482e 640 SUPERFAMILY SSF54060 400 611 3.41E-46 T 13-10-2018 RAM_17260 019da1828f8eabea4bcb10ad5337482e 640 Gene3D G3DSA:2.40.10.10 209 281 1.5E-20 T 13-10-2018 RAM_17260 019da1828f8eabea4bcb10ad5337482e 640 SMART SM00892 405 618 4.8E-59 T 13-10-2018 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 RAM_17260 019da1828f8eabea4bcb10ad5337482e 640 Gene3D G3DSA:2.40.10.10 109 208 1.5E-20 T 13-10-2018 RAM_17260 019da1828f8eabea4bcb10ad5337482e 640 Pfam PF01223 DNA/RNA non-specific endonuclease 401 614 4.0E-50 T 13-10-2018 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 RAM_17260 019da1828f8eabea4bcb10ad5337482e 640 Pfam PF13365 Trypsin-like peptidase domain 126 274 1.4E-22 T 13-10-2018 RAM_17260 019da1828f8eabea4bcb10ad5337482e 640 Gene3D G3DSA:3.40.570.10 389 618 3.8E-37 T 13-10-2018 RAM_17260 019da1828f8eabea4bcb10ad5337482e 640 SMART SM00477 406 618 1.6E-20 T 13-10-2018 IPR020821 Extracellular Endonuclease, subunit A GO:0003676|GO:0016787|GO:0046872 RAM_17260 019da1828f8eabea4bcb10ad5337482e 640 SUPERFAMILY SSF50494 96 304 1.41E-32 T 13-10-2018 IPR009003 Peptidase S1, PA clan RAM_20070 b9b87740db1748d411e851dc1d485ee3 968 SMART SM01043 96 237 1.7E-41 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_20070 b9b87740db1748d411e851dc1d485ee3 968 Gene3D G3DSA:3.40.50.300 260 383 3.7E-5 T 13-10-2018 RAM_20070 b9b87740db1748d411e851dc1d485ee3 968 SUPERFAMILY SSF48452 747 955 1.18E-13 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_20070 b9b87740db1748d411e851dc1d485ee3 968 SUPERFAMILY SSF46894 6 92 3.12E-9 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_20070 b9b87740db1748d411e851dc1d485ee3 968 Gene3D G3DSA:1.10.10.10 1 94 1.0E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_20070 b9b87740db1748d411e851dc1d485ee3 968 Gene3D G3DSA:1.25.40.10 738 965 1.4E-22 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_20070 b9b87740db1748d411e851dc1d485ee3 968 Pfam PF00931 NB-ARC domain 278 528 1.1E-5 T 13-10-2018 IPR002182 NB-ARC GO:0043531 Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-6798695|Reactome: R-HSA-6803207|Reactome: R-HSA-8953750 RAM_20070 b9b87740db1748d411e851dc1d485ee3 968 PRINTS PR00364 Disease resistance protein signature 458 472 5.2E-11 T 13-10-2018 RAM_20070 b9b87740db1748d411e851dc1d485ee3 968 PRINTS PR00364 Disease resistance protein signature 359 373 5.2E-11 T 13-10-2018 RAM_20070 b9b87740db1748d411e851dc1d485ee3 968 PRINTS PR00364 Disease resistance protein signature 282 297 5.2E-11 T 13-10-2018 RAM_20070 b9b87740db1748d411e851dc1d485ee3 968 Gene3D G3DSA:1.25.40.10 95 256 2.0E-41 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_20070 b9b87740db1748d411e851dc1d485ee3 968 SMART SM00862 16 92 5.8E-7 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_20070 b9b87740db1748d411e851dc1d485ee3 968 Pfam PF03704 Bacterial transcriptional activator domain 96 237 2.9E-35 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_20070 b9b87740db1748d411e851dc1d485ee3 968 SUPERFAMILY SSF48452 94 254 7.59E-29 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_20070 b9b87740db1748d411e851dc1d485ee3 968 Pfam PF00486 Transcriptional regulatory protein, C terminal 28 87 2.8E-5 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_20070 b9b87740db1748d411e851dc1d485ee3 968 SUPERFAMILY SSF52540 251 524 5.94E-20 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_09780 e5933b955cc119b7ac9c620ae7fd6fec 149 Gene3D G3DSA:1.10.3330.10 1 148 4.4E-43 T 13-10-2018 IPR036778 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase superfamily KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 RAM_09780 e5933b955cc119b7ac9c620ae7fd6fec 149 SUPERFAMILY SSF158694 12 147 2.49E-36 T 13-10-2018 IPR036778 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase superfamily KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 RAM_09780 e5933b955cc119b7ac9c620ae7fd6fec 149 Pfam PF09349 OHCU decarboxylase 7 144 9.1E-30 T 13-10-2018 IPR018020 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 RAM_09780 e5933b955cc119b7ac9c620ae7fd6fec 149 TIGRFAM TIGR03180 UraD_2: OHCU decarboxylase 8 147 3.8E-42 T 13-10-2018 IPR017595 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, type 2 RAM_40380 53c78b6409c562b927ec49f56ee68f24 237 SMART SM00345 24 82 5.3E-12 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_40380 53c78b6409c562b927ec49f56ee68f24 237 Pfam PF07729 FCD domain 92 214 1.4E-16 T 13-10-2018 IPR011711 GntR, C-terminal RAM_40380 53c78b6409c562b927ec49f56ee68f24 237 SUPERFAMILY SSF46785 17 86 1.57E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_40380 53c78b6409c562b927ec49f56ee68f24 237 Gene3D G3DSA:1.20.120.530 86 225 9.8E-29 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_40380 53c78b6409c562b927ec49f56ee68f24 237 Pfam PF00392 Bacterial regulatory proteins, gntR family 20 82 1.1E-13 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_40380 53c78b6409c562b927ec49f56ee68f24 237 SMART SM00895 92 215 1.0E-11 T 13-10-2018 IPR011711 GntR, C-terminal RAM_40380 53c78b6409c562b927ec49f56ee68f24 237 SUPERFAMILY SSF48008 88 222 1.6E-27 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_40380 53c78b6409c562b927ec49f56ee68f24 237 Gene3D G3DSA:1.10.10.10 19 83 1.5E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_41595 ccb925665fbfe27b4a53c65fc87ff45f 178 SUPERFAMILY SSF82607 24 102 3.53E-6 T 13-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily RAM_41595 ccb925665fbfe27b4a53c65fc87ff45f 178 Pfam PF02575 YbaB/EbfC DNA-binding family 19 102 5.6E-7 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family RAM_41595 ccb925665fbfe27b4a53c65fc87ff45f 178 Gene3D G3DSA:3.30.1310.10 9 110 1.1E-5 T 13-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily RAM_40410 eb4b483266d05fca722acc4bdf9e70dc 454 Gene3D G3DSA:3.30.559.10 51 197 5.6E-7 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_40410 eb4b483266d05fca722acc4bdf9e70dc 454 Pfam PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain 7 262 2.5E-78 T 13-10-2018 IPR004255 O-acyltransferase, WSD1, N-terminal GO:0004144|GO:0045017 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20 RAM_40410 eb4b483266d05fca722acc4bdf9e70dc 454 SUPERFAMILY SSF52777 51 149 5.34E-6 T 13-10-2018 RAM_40410 eb4b483266d05fca722acc4bdf9e70dc 454 Pfam PF06974 Protein of unknown function (DUF1298) 304 449 2.2E-35 T 13-10-2018 IPR009721 O-acyltransferase WSD1, C-terminal GO:0004144 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20 RAM_40410 eb4b483266d05fca722acc4bdf9e70dc 454 Gene3D G3DSA:3.30.559.30 198 274 5.6E-7 T 13-10-2018 RAM_40410 eb4b483266d05fca722acc4bdf9e70dc 454 TIGRFAM TIGR02946 acyl_WS_DGAT: acyltransferase, WS/DGAT/MGAT 7 452 4.8E-146 T 13-10-2018 IPR014292 Acyltransferase, WS/DGAT/MGAT GO:0016746|GO:0045017 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20 RAM_33435 cb1280abcd7d6e2ee287a34bb3fadc54 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 124 140 2.3E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_33435 cb1280abcd7d6e2ee287a34bb3fadc54 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 2.3E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_33435 cb1280abcd7d6e2ee287a34bb3fadc54 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 2.3E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_33435 cb1280abcd7d6e2ee287a34bb3fadc54 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 185 202 2.3E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_33435 cb1280abcd7d6e2ee287a34bb3fadc54 281 Pfam PF00106 short chain dehydrogenase 7 139 2.8E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_33435 cb1280abcd7d6e2ee287a34bb3fadc54 281 SUPERFAMILY SSF51735 3 245 7.12E-42 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_33435 cb1280abcd7d6e2ee287a34bb3fadc54 281 Gene3D G3DSA:3.40.50.720 1 277 2.4E-54 T 13-10-2018 RAM_23660 9314ee06eca1f0270c3a4fce456e41dd 1424 Gene3D G3DSA:2.70.98.10 392 725 4.4E-255 T 13-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 RAM_23660 9314ee06eca1f0270c3a4fce456e41dd 1424 SUPERFAMILY SSF49785 78 195 7.8E-15 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_23660 9314ee06eca1f0270c3a4fce456e41dd 1424 Gene3D G3DSA:1.20.1050.60 726 819 4.4E-255 T 13-10-2018 RAM_23660 9314ee06eca1f0270c3a4fce456e41dd 1424 Gene3D G3DSA:3.30.2080.10 656 1130 4.4E-255 T 13-10-2018 RAM_23660 9314ee06eca1f0270c3a4fce456e41dd 1424 Pfam PF00754 F5/8 type C domain 78 200 1.2E-14 T 13-10-2018 IPR000421 Coagulation factor 5/8 C-terminal domain RAM_23660 9314ee06eca1f0270c3a4fce456e41dd 1424 SUPERFAMILY SSF48208 623 1108 8.33E-21 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_23660 9314ee06eca1f0270c3a4fce456e41dd 1424 Gene3D G3DSA:2.60.120.260 69 207 1.7E-22 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_23660 9314ee06eca1f0270c3a4fce456e41dd 1424 Gene3D G3DSA:2.60.120.260 1156 1289 1.8E-12 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_23660 9314ee06eca1f0270c3a4fce456e41dd 1424 SUPERFAMILY SSF49785 1166 1283 1.98E-5 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_23660 9314ee06eca1f0270c3a4fce456e41dd 1424 Pfam PF07971 Glycosyl hydrolase family 92 596 1127 4.9E-157 T 13-10-2018 IPR012939 Glycosyl hydrolase family 92 RAM_23660 9314ee06eca1f0270c3a4fce456e41dd 1424 TIGRFAM TIGR01180 aman2_put: putative alpha-1,2-mannosidase 402 1129 9.3E-138 T 13-10-2018 IPR005887 Alpha-1,2-mannosidase, putative RAM_23660 9314ee06eca1f0270c3a4fce456e41dd 1424 Gene3D G3DSA:1.20.1610.10 820 1000 4.4E-255 T 13-10-2018 RAM_47130 9f9dc348cff46333e982f2e0b3f31b82 563 Gene3D G3DSA:3.90.780.10 376 561 2.2E-55 T 13-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RAM_47130 9f9dc348cff46333e982f2e0b3f31b82 563 PRINTS PR01607 Apyrase family signature 429 452 6.3E-21 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RAM_47130 9f9dc348cff46333e982f2e0b3f31b82 563 PRINTS PR01607 Apyrase family signature 299 319 6.3E-21 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RAM_47130 9f9dc348cff46333e982f2e0b3f31b82 563 PRINTS PR01607 Apyrase family signature 500 519 6.3E-21 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RAM_47130 9f9dc348cff46333e982f2e0b3f31b82 563 PRINTS PR01607 Apyrase family signature 268 291 6.3E-21 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RAM_47130 9f9dc348cff46333e982f2e0b3f31b82 563 PRINTS PR01607 Apyrase family signature 35 53 6.3E-21 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RAM_47130 9f9dc348cff46333e982f2e0b3f31b82 563 Gene3D G3DSA:3.60.21.10 32 364 6.4E-69 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like RAM_47130 9f9dc348cff46333e982f2e0b3f31b82 563 SUPERFAMILY SSF55816 363 562 3.53E-50 T 13-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RAM_47130 9f9dc348cff46333e982f2e0b3f31b82 563 SUPERFAMILY SSF56300 31 363 1.09E-66 T 13-10-2018 RAM_47130 9f9dc348cff46333e982f2e0b3f31b82 563 Pfam PF02872 5'-nucleotidase, C-terminal domain 366 525 1.9E-38 T 13-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RAM_47130 9f9dc348cff46333e982f2e0b3f31b82 563 Pfam PF00149 Calcineurin-like phosphoesterase 38 285 1.0E-9 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 RAM_20140 d517bc04794e010a24aec7971ce5228e 275 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 263 2.4E-12 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_20140 d517bc04794e010a24aec7971ce5228e 275 SUPERFAMILY SSF161098 3 275 5.79E-63 T 13-10-2018 IPR035906 MetI-like superfamily RAM_20140 d517bc04794e010a24aec7971ce5228e 275 Gene3D G3DSA:1.10.3720.10 1 262 3.5E-51 T 13-10-2018 IPR035906 MetI-like superfamily RAM_35855 9b818117f97e8c78407304e918c4aed1 196 SUPERFAMILY SSF46689 3 86 3.28E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_35855 9b818117f97e8c78407304e918c4aed1 196 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 60 4.6E-12 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_35855 9b818117f97e8c78407304e918c4aed1 196 Pfam PF13977 BetI-type transcriptional repressor, C-terminal 86 179 3.0E-7 T 13-10-2018 IPR039538 BetI-type transcriptional repressor, C-terminal RAM_35855 9b818117f97e8c78407304e918c4aed1 196 Gene3D G3DSA:1.10.357.10 1 190 1.4E-31 T 13-10-2018 RAM_35855 9b818117f97e8c78407304e918c4aed1 196 SUPERFAMILY SSF48498 84 190 5.17E-12 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_35855 9b818117f97e8c78407304e918c4aed1 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 1.8E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_35855 9b818117f97e8c78407304e918c4aed1 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 1.8E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_07180 5582c13633f35d8d809aef518b6cece7 141 SUPERFAMILY SSF46785 9 125 6.37E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_07180 5582c13633f35d8d809aef518b6cece7 141 SMART SM00347 20 117 6.9E-15 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_07180 5582c13633f35d8d809aef518b6cece7 141 Gene3D G3DSA:1.10.10.10 4 129 3.6E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_07180 5582c13633f35d8d809aef518b6cece7 141 Pfam PF12802 MarR family 25 84 1.9E-13 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_28280 32b9b11cd5ec20ebcdd5d0d2d392bc97 102 SUPERFAMILY SSF53474 3 77 1.27E-22 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_28280 32b9b11cd5ec20ebcdd5d0d2d392bc97 102 Gene3D G3DSA:3.40.50.1820 1 100 4.4E-24 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_28280 32b9b11cd5ec20ebcdd5d0d2d392bc97 102 Pfam PF07859 alpha/beta hydrolase fold 2 70 1.5E-22 T 13-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 RAM_40260 13a7d9726b525f4400f29319a828ef32 625 Gene3D G3DSA:2.60.40.290 525 624 3.9E-28 T 13-10-2018 IPR012291 CBM2, carbohydrate-binding domain superfamily GO:0004553|GO:0030247 RAM_40260 13a7d9726b525f4400f29319a828ef32 625 Pfam PF00553 Cellulose binding domain 530 616 3.9E-22 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_40260 13a7d9726b525f4400f29319a828ef32 625 SUPERFAMILY SSF51445 34 405 4.95E-22 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_40260 13a7d9726b525f4400f29319a828ef32 625 Gene3D G3DSA:3.20.20.80 34 427 6.8E-173 T 13-10-2018 RAM_40260 13a7d9726b525f4400f29319a828ef32 625 Pfam PF12891 Glycoside hydrolase family 44 74 307 2.6E-70 T 13-10-2018 IPR024745 Glycoside hydrolase, family 44 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 RAM_40260 13a7d9726b525f4400f29319a828ef32 625 SMART SM00637 530 622 3.4E-31 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_40260 13a7d9726b525f4400f29319a828ef32 625 SUPERFAMILY SSF49384 525 619 2.65E-27 T 13-10-2018 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily GO:0030246 RAM_40260 13a7d9726b525f4400f29319a828ef32 625 Gene3D G3DSA:2.60.40.1180 23 524 6.8E-173 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta RAM_40185 6115fdaf81247becd37613b31781c821 1019 SMART SM00028 843 876 14.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_40185 6115fdaf81247becd37613b31781c821 1019 SMART SM00028 923 956 49.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_40185 6115fdaf81247becd37613b31781c821 1019 SMART SM00028 803 836 3.7 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_40185 6115fdaf81247becd37613b31781c821 1019 SMART SM00028 883 916 0.014 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_40185 6115fdaf81247becd37613b31781c821 1019 SUPERFAMILY SSF52540 344 610 1.39E-23 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_40185 6115fdaf81247becd37613b31781c821 1019 Gene3D G3DSA:1.10.10.10 1 98 1.7E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_40185 6115fdaf81247becd37613b31781c821 1019 SUPERFAMILY SSF48452 820 998 2.56E-27 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_40185 6115fdaf81247becd37613b31781c821 1019 SUPERFAMILY SSF46894 2 94 2.32E-13 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_40185 6115fdaf81247becd37613b31781c821 1019 SUPERFAMILY SSF48452 97 256 1.42E-22 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_40185 6115fdaf81247becd37613b31781c821 1019 Pfam PF00486 Transcriptional regulatory protein, C terminal 23 93 9.4E-10 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_40185 6115fdaf81247becd37613b31781c821 1019 Pfam PF03704 Bacterial transcriptional activator domain 278 327 1.9E-5 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_40185 6115fdaf81247becd37613b31781c821 1019 Pfam PF03704 Bacterial transcriptional activator domain 103 243 4.0E-25 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_40185 6115fdaf81247becd37613b31781c821 1019 PRINTS PR00364 Disease resistance protein signature 381 396 4.5E-9 T 13-10-2018 RAM_40185 6115fdaf81247becd37613b31781c821 1019 PRINTS PR00364 Disease resistance protein signature 548 562 4.5E-9 T 13-10-2018 RAM_40185 6115fdaf81247becd37613b31781c821 1019 PRINTS PR00364 Disease resistance protein signature 460 474 4.5E-9 T 13-10-2018 RAM_40185 6115fdaf81247becd37613b31781c821 1019 SMART SM01043 102 246 2.4E-25 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_40185 6115fdaf81247becd37613b31781c821 1019 Gene3D G3DSA:1.25.40.10 723 915 2.6E-27 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_40185 6115fdaf81247becd37613b31781c821 1019 Gene3D G3DSA:1.25.40.10 916 1015 2.1E-15 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_40185 6115fdaf81247becd37613b31781c821 1019 Gene3D G3DSA:1.25.40.10 260 342 5.5E-9 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_40185 6115fdaf81247becd37613b31781c821 1019 Gene3D G3DSA:1.25.40.10 100 259 3.0E-31 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_40185 6115fdaf81247becd37613b31781c821 1019 Pfam PF00931 NB-ARC domain 380 560 7.7E-10 T 13-10-2018 IPR002182 NB-ARC GO:0043531 Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-6798695|Reactome: R-HSA-6803207|Reactome: R-HSA-8953750 RAM_40185 6115fdaf81247becd37613b31781c821 1019 SUPERFAMILY SSF48452 279 351 4.93E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_40185 6115fdaf81247becd37613b31781c821 1019 Pfam PF13424 Tetratricopeptide repeat 883 954 3.3E-10 T 13-10-2018 RAM_40185 6115fdaf81247becd37613b31781c821 1019 Gene3D G3DSA:3.40.50.300 343 505 2.4E-29 T 13-10-2018 RAM_40185 6115fdaf81247becd37613b31781c821 1019 SMART SM00862 15 95 2.8E-11 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_06680 ce17a16be515ab4e1ccc2a2a8f750170 274 Gene3D G3DSA:3.40.50.80 133 263 1.5E-36 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RAM_06680 ce17a16be515ab4e1ccc2a2a8f750170 274 Pfam PF08021 Siderophore-interacting FAD-binding domain 8 128 5.6E-31 T 13-10-2018 IPR013113 FAD-binding 9, siderophore-interacting RAM_06680 ce17a16be515ab4e1ccc2a2a8f750170 274 SUPERFAMILY SSF63380 6 127 1.88E-10 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RAM_06680 ce17a16be515ab4e1ccc2a2a8f750170 274 Pfam PF04954 Siderophore-interacting protein 136 245 2.5E-33 T 13-10-2018 IPR007037 Siderophore-interacting protein, C-terminal domain RAM_06680 ce17a16be515ab4e1ccc2a2a8f750170 274 Gene3D G3DSA:2.40.30.10 3 128 1.8E-33 T 13-10-2018 RAM_22400 e5259b895e397a849277ae0c47e23b05 500 Gene3D G3DSA:3.40.50.300 1 233 3.3E-54 T 13-10-2018 RAM_22400 e5259b895e397a849277ae0c47e23b05 500 Pfam PF00005 ABC transporter 17 166 1.6E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_22400 e5259b895e397a849277ae0c47e23b05 500 SUPERFAMILY SSF52540 273 487 1.51E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_22400 e5259b895e397a849277ae0c47e23b05 500 SUPERFAMILY SSF52540 2 225 3.15E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_22400 e5259b895e397a849277ae0c47e23b05 500 SMART SM00382 281 474 1.4E-5 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_22400 e5259b895e397a849277ae0c47e23b05 500 SMART SM00382 26 214 9.3E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_22400 e5259b895e397a849277ae0c47e23b05 500 Gene3D G3DSA:3.40.50.300 269 498 5.5E-47 T 13-10-2018 RAM_22400 e5259b895e397a849277ae0c47e23b05 500 Pfam PF00005 ABC transporter 275 426 4.4E-23 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_22400 e5259b895e397a849277ae0c47e23b05 500 ProSitePatterns PS00211 ABC transporters family signature. 399 413 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_28220 81eca499f9478cce88733b41864d6aa7 536 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 38 56 - T 13-10-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site RAM_28220 81eca499f9478cce88733b41864d6aa7 536 Gene3D G3DSA:3.20.20.10 31 256 1.2E-72 T 13-10-2018 IPR029066 PLP-binding barrel RAM_28220 81eca499f9478cce88733b41864d6aa7 536 Pfam PF00583 Acetyltransferase (GNAT) family 385 506 1.3E-8 T 13-10-2018 IPR000182 GNAT domain RAM_28220 81eca499f9478cce88733b41864d6aa7 536 SUPERFAMILY SSF50621 242 377 2.72E-21 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 RAM_28220 81eca499f9478cce88733b41864d6aa7 536 Gene3D G3DSA:3.40.630.30 369 535 3.8E-17 T 13-10-2018 RAM_28220 81eca499f9478cce88733b41864d6aa7 536 PRINTS PR01182 Ornithine decarboxylase signature 110 132 3.6E-12 T 13-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 RAM_28220 81eca499f9478cce88733b41864d6aa7 536 PRINTS PR01182 Ornithine decarboxylase signature 312 322 3.6E-12 T 13-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 RAM_28220 81eca499f9478cce88733b41864d6aa7 536 PRINTS PR01182 Ornithine decarboxylase signature 36 63 3.6E-12 T 13-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 RAM_28220 81eca499f9478cce88733b41864d6aa7 536 PRINTS PR01182 Ornithine decarboxylase signature 80 104 3.6E-12 T 13-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 RAM_28220 81eca499f9478cce88733b41864d6aa7 536 Gene3D G3DSA:2.40.37.10 257 360 1.2E-72 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 RAM_28220 81eca499f9478cce88733b41864d6aa7 536 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 19 258 2.1E-40 T 13-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 RAM_28220 81eca499f9478cce88733b41864d6aa7 536 SUPERFAMILY SSF51419 16 260 8.18E-51 T 13-10-2018 IPR029066 PLP-binding barrel RAM_28220 81eca499f9478cce88733b41864d6aa7 536 SUPERFAMILY SSF55729 374 528 3.54E-19 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_28220 81eca499f9478cce88733b41864d6aa7 536 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 38 56 9.0E-15 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RAM_28220 81eca499f9478cce88733b41864d6aa7 536 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 158 171 9.0E-15 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RAM_28220 81eca499f9478cce88733b41864d6aa7 536 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 58 70 9.0E-15 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RAM_28220 81eca499f9478cce88733b41864d6aa7 536 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 248 267 9.0E-15 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RAM_01265 7b37b97fd2ce7fbdadc28e720c098c5c 325 SUPERFAMILY SSF89733 46 319 7.19E-41 T 13-10-2018 IPR036111 Malate/L-sulfolactate/L-lactate dehydrogenase-like superfamily GO:0016491|GO:0055114 RAM_01265 7b37b97fd2ce7fbdadc28e720c098c5c 325 Gene3D G3DSA:3.30.1370.60 117 296 2.7E-23 T 13-10-2018 RAM_01265 7b37b97fd2ce7fbdadc28e720c098c5c 325 Pfam PF02615 Malate/L-lactate dehydrogenase 48 211 1.7E-27 T 13-10-2018 IPR003767 Malate/L-lactate dehydrogenase-like GO:0016491|GO:0055114 RAM_01265 7b37b97fd2ce7fbdadc28e720c098c5c 325 Pfam PF02615 Malate/L-lactate dehydrogenase 219 309 2.0E-9 T 13-10-2018 IPR003767 Malate/L-lactate dehydrogenase-like GO:0016491|GO:0055114 RAM_01265 7b37b97fd2ce7fbdadc28e720c098c5c 325 Gene3D G3DSA:1.10.1530.10 41 116 6.3E-7 T 13-10-2018 RAM_01920 1303a9621d38e1acb8d389d4e6303052 158 Pfam PF00293 NUDIX domain 20 139 4.4E-20 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RAM_01920 1303a9621d38e1acb8d389d4e6303052 158 SUPERFAMILY SSF55811 6 149 7.85E-35 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RAM_01920 1303a9621d38e1acb8d389d4e6303052 158 PRINTS PR00502 NUDIX hydrolase family signature 44 58 2.4E-5 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RAM_01920 1303a9621d38e1acb8d389d4e6303052 158 PRINTS PR00502 NUDIX hydrolase family signature 58 73 2.4E-5 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RAM_01920 1303a9621d38e1acb8d389d4e6303052 158 ProSitePatterns PS00893 Nudix box signature. 49 70 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RAM_01920 1303a9621d38e1acb8d389d4e6303052 158 Gene3D G3DSA:3.90.79.10 10 149 4.1E-36 T 13-10-2018 RAM_11615 5443dc5374f85c2da5d88d998949c9d6 390 SUPERFAMILY SSF50956 39 388 7.06E-49 T 13-10-2018 RAM_11615 5443dc5374f85c2da5d88d998949c9d6 390 Gene3D G3DSA:2.120.10.30 22 390 6.2E-72 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RAM_11615 5443dc5374f85c2da5d88d998949c9d6 390 Pfam PF02333 Phytase 31 101 8.1E-13 T 13-10-2018 IPR003431 Beta propeller phytase GO:0016158 KEGG: 00562+3.1.3.8|MetaCyc: PWY-4702 RAM_11615 5443dc5374f85c2da5d88d998949c9d6 390 Pfam PF02333 Phytase 289 368 2.0E-9 T 13-10-2018 IPR003431 Beta propeller phytase GO:0016158 KEGG: 00562+3.1.3.8|MetaCyc: PWY-4702 RAM_43120 dc2178984f82a2ee9f2f9e772f2307f0 245 Gene3D G3DSA:3.90.226.10 2 245 4.2E-74 T 13-10-2018 RAM_43120 dc2178984f82a2ee9f2f9e772f2307f0 245 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 95 115 - T 13-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 RAM_43120 dc2178984f82a2ee9f2f9e772f2307f0 245 Pfam PF00378 Enoyl-CoA hydratase/isomerase 9 231 2.4E-51 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RAM_43120 dc2178984f82a2ee9f2f9e772f2307f0 245 SUPERFAMILY SSF52096 2 241 3.08E-68 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_20215 dc5454b13b93c718c6a1d92493a587c7 291 Gene3D G3DSA:2.60.40.760 196 283 1.3E-23 T 13-10-2018 IPR036749 Expansin, cellulose-binding-like domain superfamily RAM_20215 dc5454b13b93c718c6a1d92493a587c7 291 Gene3D G3DSA:2.40.40.10 96 195 2.0E-23 T 13-10-2018 IPR036908 RlpA-like domain superfamily RAM_20215 dc5454b13b93c718c6a1d92493a587c7 291 SUPERFAMILY SSF50685 92 195 2.76E-25 T 13-10-2018 IPR036908 RlpA-like domain superfamily RAM_20215 dc5454b13b93c718c6a1d92493a587c7 291 Pfam PF03330 Lytic transglycolase 99 190 1.3E-10 T 13-10-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain RAM_20215 dc5454b13b93c718c6a1d92493a587c7 291 SUPERFAMILY SSF49590 200 270 3.27E-5 T 13-10-2018 IPR036749 Expansin, cellulose-binding-like domain superfamily RAM_37590 f4f1619888e558ed18c529cd4bd7c785 74 Gene3D G3DSA:3.20.20.210 1 74 1.4E-21 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 RAM_37590 f4f1619888e558ed18c529cd4bd7c785 74 SUPERFAMILY SSF51726 1 73 9.29E-14 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 RAM_37590 f4f1619888e558ed18c529cd4bd7c785 74 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 1 60 6.0E-6 T 13-10-2018 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 RAM_44800 1bf13ae15d13b7e20065720691e59457 193 Pfam PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain 14 127 6.9E-10 T 13-10-2018 IPR024344 Mycothiol-dependent maleylpyruvate isomerase, metal-binding domain GO:0046872 RAM_44800 1bf13ae15d13b7e20065720691e59457 193 SUPERFAMILY SSF109854 4 132 2.7E-14 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_44800 1bf13ae15d13b7e20065720691e59457 193 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 6 183 5.2E-18 T 13-10-2018 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type RAM_44800 1bf13ae15d13b7e20065720691e59457 193 TIGRFAM TIGR03086 TIGR03086: TIGR03086 family protein 7 183 1.5E-37 T 13-10-2018 IPR017520 Conserved hypothetical protein CHP03086 RAM_44800 1bf13ae15d13b7e20065720691e59457 193 Gene3D G3DSA:1.20.120.450 2 131 1.4E-7 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_03550 0360d639fd0ed4a3b397575a0e07c65d 61 ProSitePatterns PS00634 Ribosomal protein L30 signature. 22 54 - T 13-10-2018 IPR018038 Ribosomal protein L30, conserved site RAM_03550 0360d639fd0ed4a3b397575a0e07c65d 61 Gene3D G3DSA:3.30.1390.20 1 60 9.2E-25 T 13-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily RAM_03550 0360d639fd0ed4a3b397575a0e07c65d 61 Pfam PF00327 Ribosomal protein L30p/L7e 4 54 2.3E-17 T 13-10-2018 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain RAM_03550 0360d639fd0ed4a3b397575a0e07c65d 61 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 4 58 4.9E-23 T 13-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_03550 0360d639fd0ed4a3b397575a0e07c65d 61 SUPERFAMILY SSF55129 1 59 7.33E-21 T 13-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily RAM_03550 0360d639fd0ed4a3b397575a0e07c65d 61 PIRSF PIRSF002211 1 60 1.4E-27 T 13-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_03550 0360d639fd0ed4a3b397575a0e07c65d 61 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 1 58 20.263 T 13-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_23510 ba82515cb44e3186bc2075eda8b5f15f 771 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 9 36 1.5E-4 T 13-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal RAM_23510 ba82515cb44e3186bc2075eda8b5f15f 771 Gene3D G3DSA:2.70.98.50 126 292 1.6E-140 T 13-10-2018 RAM_23510 ba82515cb44e3186bc2075eda8b5f15f 771 SUPERFAMILY SSF48208 257 751 2.12E-56 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_23510 ba82515cb44e3186bc2075eda8b5f15f 771 Gene3D G3DSA:1.50.10.10 302 740 1.6E-140 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 RAM_23510 ba82515cb44e3186bc2075eda8b5f15f 771 Pfam PF14498 Glycosyl hydrolase family 65, N-terminal domain 55 109 9.5E-12 T 13-10-2018 IPR027414 Glycosyl hydrolase family 95, N-terminal domain KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807 RAM_23510 ba82515cb44e3186bc2075eda8b5f15f 771 Pfam PF14498 Glycosyl hydrolase family 65, N-terminal domain 125 234 2.7E-15 T 13-10-2018 IPR027414 Glycosyl hydrolase family 95, N-terminal domain KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807 RAM_23510 ba82515cb44e3186bc2075eda8b5f15f 771 Gene3D G3DSA:2.60.40.1180 293 751 1.6E-140 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta RAM_23510 ba82515cb44e3186bc2075eda8b5f15f 771 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 8 29 3.6E-7 T 13-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal RAM_23510 ba82515cb44e3186bc2075eda8b5f15f 771 PIRSF PIRSF007663 108 771 6.5E-171 T 13-10-2018 IPR016518 Alpha-L-fucosidase GO:0004560 KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807 RAM_23510 ba82515cb44e3186bc2075eda8b5f15f 771 PIRSF PIRSF007663 30 114 2.5E-11 T 13-10-2018 IPR016518 Alpha-L-fucosidase GO:0004560 KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807 RAM_32675 63394eb24ee70580eddcbb7e6a96da36 345 Gene3D G3DSA:3.10.450.50 199 331 3.0E-13 T 13-10-2018 RAM_32675 63394eb24ee70580eddcbb7e6a96da36 345 SUPERFAMILY SSF88659 128 189 5.79E-12 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_32675 63394eb24ee70580eddcbb7e6a96da36 345 Pfam PF08281 Sigma-70, region 4 134 185 1.2E-13 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_32675 63394eb24ee70580eddcbb7e6a96da36 345 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 6 189 3.0E-23 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_32675 63394eb24ee70580eddcbb7e6a96da36 345 TIGRFAM TIGR02960 SigX5: RNA polymerase sigma-70 factor, TIGR02960 family 4 315 2.4E-116 T 13-10-2018 IPR014305 RNA polymerase sigma-G type, actinobacteria RAM_32675 63394eb24ee70580eddcbb7e6a96da36 345 SUPERFAMILY SSF54427 204 321 1.23E-11 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_32675 63394eb24ee70580eddcbb7e6a96da36 345 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 32 63 - T 13-10-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_32675 63394eb24ee70580eddcbb7e6a96da36 345 Pfam PF04542 Sigma-70 region 2 10 76 1.4E-20 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_32675 63394eb24ee70580eddcbb7e6a96da36 345 SUPERFAMILY SSF88946 3 81 9.42E-26 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_32675 63394eb24ee70580eddcbb7e6a96da36 345 Gene3D G3DSA:1.10.1740.10 1 90 2.0E-27 T 13-10-2018 RAM_32675 63394eb24ee70580eddcbb7e6a96da36 345 Gene3D G3DSA:1.10.10.10 132 191 1.1E-14 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_24410 6cc4a662addc59d790642363a7a39c92 332 Gene3D G3DSA:3.40.50.1100 42 147 2.8E-79 T 13-10-2018 RAM_24410 6cc4a662addc59d790642363a7a39c92 332 SUPERFAMILY SSF53686 23 308 1.96E-67 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RAM_24410 6cc4a662addc59d790642363a7a39c92 332 Gene3D G3DSA:3.40.50.1100 27 298 2.8E-79 T 13-10-2018 RAM_24410 6cc4a662addc59d790642363a7a39c92 332 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 27 289 8.7E-49 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RAM_24410 6cc4a662addc59d790642363a7a39c92 332 TIGRFAM TIGR03945 PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA 9 307 2.1E-110 T 13-10-2018 IPR023927 2,3-diaminopropionate biosynthesis protein SbnA RAM_20930 a7edaba9b106948b5c66350be5a3fe29 265 Pfam PF00303 Thymidylate synthase 5 265 1.3E-120 T 13-10-2018 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 RAM_20930 a7edaba9b106948b5c66350be5a3fe29 265 PRINTS PR00108 Thymidylate synthase family signature 143 158 4.8E-48 T 13-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 RAM_20930 a7edaba9b106948b5c66350be5a3fe29 265 PRINTS PR00108 Thymidylate synthase family signature 161 187 4.8E-48 T 13-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 RAM_20930 a7edaba9b106948b5c66350be5a3fe29 265 PRINTS PR00108 Thymidylate synthase family signature 117 136 4.8E-48 T 13-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 RAM_20930 a7edaba9b106948b5c66350be5a3fe29 265 PRINTS PR00108 Thymidylate synthase family signature 199 216 4.8E-48 T 13-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 RAM_20930 a7edaba9b106948b5c66350be5a3fe29 265 PRINTS PR00108 Thymidylate synthase family signature 44 65 4.8E-48 T 13-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 RAM_20930 a7edaba9b106948b5c66350be5a3fe29 265 SUPERFAMILY SSF55831 3 265 2.09E-123 T 13-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 RAM_20930 a7edaba9b106948b5c66350be5a3fe29 265 Gene3D G3DSA:3.30.572.10 3 265 3.6E-126 T 13-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 RAM_20930 a7edaba9b106948b5c66350be5a3fe29 265 ProSitePatterns PS00091 Thymidylate synthase active site. 128 156 - T 13-10-2018 IPR020940 Thymidylate synthase, active site GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 RAM_20930 a7edaba9b106948b5c66350be5a3fe29 265 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 87 265 4.0E-89 T 13-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 RAM_20930 a7edaba9b106948b5c66350be5a3fe29 265 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 5 88 4.8E-39 T 13-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 RAM_20930 a7edaba9b106948b5c66350be5a3fe29 265 Hamap MF_00008 Thymidylate synthase [thyA]. 3 265 38.813 T 13-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 RAM_41765 da313a2a276ed9423af791ecb006dbfb 315 SUPERFAMILY SSF46785 3 48 3.5E-6 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_41765 da313a2a276ed9423af791ecb006dbfb 315 Gene3D G3DSA:3.30.70.920 224 314 6.6E-14 T 13-10-2018 RAM_41765 da313a2a276ed9423af791ecb006dbfb 315 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 4 20 9.4E-7 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_41765 da313a2a276ed9423af791ecb006dbfb 315 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 20 31 9.4E-7 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_41765 da313a2a276ed9423af791ecb006dbfb 315 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 31 50 9.4E-7 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_41765 da313a2a276ed9423af791ecb006dbfb 315 SUPERFAMILY SSF46785 176 218 5.77E-5 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_41765 da313a2a276ed9423af791ecb006dbfb 315 Pfam PF13404 AsnC-type helix-turn-helix domain 4 45 8.1E-16 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_41765 da313a2a276ed9423af791ecb006dbfb 315 Pfam PF13404 AsnC-type helix-turn-helix domain 176 212 2.3E-9 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_41765 da313a2a276ed9423af791ecb006dbfb 315 SMART SM00344 4 108 5.2E-5 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RAM_41765 da313a2a276ed9423af791ecb006dbfb 315 SMART SM00344 176 277 2.4E-5 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RAM_41765 da313a2a276ed9423af791ecb006dbfb 315 Gene3D G3DSA:1.10.10.10 2 53 1.6E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_41765 da313a2a276ed9423af791ecb006dbfb 315 Gene3D G3DSA:1.10.10.10 174 219 1.1E-10 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_41765 da313a2a276ed9423af791ecb006dbfb 315 SUPERFAMILY SSF54909 233 310 1.74E-10 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_41765 da313a2a276ed9423af791ecb006dbfb 315 Pfam PF01037 Lrp/AsnC ligand binding domain 243 308 1.1E-10 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RAM_32195 adbbf1a5585337f81de713a22a07b0bf 345 Gene3D G3DSA:3.20.20.70 2 339 1.5E-120 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_32195 adbbf1a5585337f81de713a22a07b0bf 345 TIGRFAM TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate) 17 343 1.4E-109 T 13-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 RAM_32195 adbbf1a5585337f81de713a22a07b0bf 345 Hamap MF_00225 Dihydroorotate dehydrogenase (quinone) [pyrD]. 3 341 46.207 T 13-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 RAM_32195 adbbf1a5585337f81de713a22a07b0bf 345 Pfam PF01180 Dihydroorotate dehydrogenase 50 343 1.2E-84 T 13-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 RAM_32195 adbbf1a5585337f81de713a22a07b0bf 345 SUPERFAMILY SSF51395 12 342 5.66E-91 T 13-10-2018 RAM_32195 adbbf1a5585337f81de713a22a07b0bf 345 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 297 317 - T 13-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 RAM_32195 adbbf1a5585337f81de713a22a07b0bf 345 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 83 102 - T 13-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 RAM_32195 adbbf1a5585337f81de713a22a07b0bf 345 PIRSF PIRSF000164 12 345 1.9E-94 T 13-10-2018 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 RAM_15950 5ca1a8636a43e8c161592a343fd2fcc2 504 SUPERFAMILY SSF52540 46 395 7.99E-9 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_29115 53a63d386634592aeefb8c043146698f 496 PIRSF PIRSF000332 1 230 1.7E-34 T 13-10-2018 IPR000960 Flavin monooxygenase FMO GO:0004499|GO:0050660|GO:0050661|GO:0055114 RAM_29115 53a63d386634592aeefb8c043146698f 496 PIRSF PIRSF000332 306 467 0.14 T 13-10-2018 IPR000960 Flavin monooxygenase FMO GO:0004499|GO:0050660|GO:0050661|GO:0055114 RAM_29115 53a63d386634592aeefb8c043146698f 496 Pfam PF00743 Flavin-binding monooxygenase-like 2 226 1.6E-30 T 13-10-2018 IPR020946 Flavin monooxygenase-like GO:0004499|GO:0050660|GO:0050661|GO:0055114 RAM_29115 53a63d386634592aeefb8c043146698f 496 SUPERFAMILY SSF51905 1 238 5.61E-53 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_29115 53a63d386634592aeefb8c043146698f 496 Gene3D G3DSA:3.50.50.60 1 400 2.9E-68 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_29115 53a63d386634592aeefb8c043146698f 496 PRINTS PR00370 Flavin-containing monooxygenase (FMO) signature 45 63 6.7E-14 T 13-10-2018 IPR000960 Flavin monooxygenase FMO GO:0004499|GO:0050660|GO:0050661|GO:0055114 RAM_29115 53a63d386634592aeefb8c043146698f 496 PRINTS PR00370 Flavin-containing monooxygenase (FMO) signature 122 138 6.7E-14 T 13-10-2018 IPR000960 Flavin monooxygenase FMO GO:0004499|GO:0050660|GO:0050661|GO:0055114 RAM_29115 53a63d386634592aeefb8c043146698f 496 PRINTS PR00370 Flavin-containing monooxygenase (FMO) signature 181 196 6.7E-14 T 13-10-2018 IPR000960 Flavin monooxygenase FMO GO:0004499|GO:0050660|GO:0050661|GO:0055114 RAM_29115 53a63d386634592aeefb8c043146698f 496 PRINTS PR00370 Flavin-containing monooxygenase (FMO) signature 1 13 6.7E-14 T 13-10-2018 IPR000960 Flavin monooxygenase FMO GO:0004499|GO:0050660|GO:0050661|GO:0055114 RAM_29115 53a63d386634592aeefb8c043146698f 496 PRINTS PR00370 Flavin-containing monooxygenase (FMO) signature 69 84 6.7E-14 T 13-10-2018 IPR000960 Flavin monooxygenase FMO GO:0004499|GO:0050660|GO:0050661|GO:0055114 RAM_29115 53a63d386634592aeefb8c043146698f 496 SUPERFAMILY SSF51905 143 402 3.48E-10 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_35685 318765484c4d01adb1a15ea22d84d4c4 563 Pfam PF13193 AMP-binding enzyme C-terminal domain 477 552 2.6E-15 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_35685 318765484c4d01adb1a15ea22d84d4c4 563 Gene3D G3DSA:3.30.300.310 464 563 2.6E-33 T 13-10-2018 RAM_35685 318765484c4d01adb1a15ea22d84d4c4 563 Gene3D G3DSA:3.40.50.12780 1 463 1.4E-83 T 13-10-2018 RAM_35685 318765484c4d01adb1a15ea22d84d4c4 563 Pfam PF00501 AMP-binding enzyme 43 468 2.1E-67 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_35685 318765484c4d01adb1a15ea22d84d4c4 563 SUPERFAMILY SSF56801 20 560 4.06E-110 T 13-10-2018 RAM_23260 e5abef8f54d20e1c3ab9854074545a90 288 Pfam PF03466 LysR substrate binding domain 85 287 5.8E-19 T 13-10-2018 IPR005119 LysR, substrate-binding RAM_23260 e5abef8f54d20e1c3ab9854074545a90 288 SUPERFAMILY SSF53850 84 286 1.34E-19 T 13-10-2018 RAM_23260 e5abef8f54d20e1c3ab9854074545a90 288 Gene3D G3DSA:1.10.10.10 1 88 1.8E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_23260 e5abef8f54d20e1c3ab9854074545a90 288 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 2.2E-21 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_23260 e5abef8f54d20e1c3ab9854074545a90 288 SUPERFAMILY SSF46785 1 85 3.29E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_23260 e5abef8f54d20e1c3ab9854074545a90 288 Gene3D G3DSA:3.40.190.290 89 287 2.7E-18 T 13-10-2018 RAM_23260 e5abef8f54d20e1c3ab9854074545a90 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.7E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_23260 e5abef8f54d20e1c3ab9854074545a90 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.7E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_23260 e5abef8f54d20e1c3ab9854074545a90 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.7E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_30555 b4f4eee94d4f7ed9f45a86054c47c19b 312 PIRSF PIRSF016838 1 54 0.0017 T 13-10-2018 IPR028349 Protein PafC RAM_30555 b4f4eee94d4f7ed9f45a86054c47c19b 312 PIRSF PIRSF016838 69 312 2.9E-16 T 13-10-2018 IPR028349 Protein PafC RAM_30555 b4f4eee94d4f7ed9f45a86054c47c19b 312 Pfam PF08279 HTH domain 11 58 1.8E-12 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 RAM_30555 b4f4eee94d4f7ed9f45a86054c47c19b 312 Gene3D G3DSA:1.10.10.10 1 63 7.3E-8 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_30555 b4f4eee94d4f7ed9f45a86054c47c19b 312 Pfam PF13280 WYL domain 138 305 2.3E-31 T 13-10-2018 IPR026881 WYL domain RAM_30555 b4f4eee94d4f7ed9f45a86054c47c19b 312 SUPERFAMILY SSF46785 2 59 8.24E-10 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_44920 8b246965f40b5f25b1224053e6526d99 336 TIGRFAM TIGR03624 TIGR03624: putative hydrolase 2 334 1.1E-95 T 13-10-2018 IPR018766 Zinicin-like metallopeptidase type 2 RAM_44920 8b246965f40b5f25b1224053e6526d99 336 Gene3D G3DSA:1.20.150.30 1 121 7.2E-21 T 13-10-2018 RAM_44920 8b246965f40b5f25b1224053e6526d99 336 Pfam PF10103 Zincin-like metallopeptidase 2 331 5.1E-105 T 13-10-2018 IPR018766 Zinicin-like metallopeptidase type 2 RAM_44920 8b246965f40b5f25b1224053e6526d99 336 TIGRFAM TIGR03883 DUF2342_F420: uncharacterized protein, coenzyme F420 biosynthesis associated 2 335 1.1E-114 T 13-10-2018 IPR022454 Conserved hypothetical protein CHP03883, F420 biosynthesis associated RAM_44920 8b246965f40b5f25b1224053e6526d99 336 SUPERFAMILY SSF55486 1 334 2.78E-95 T 13-10-2018 RAM_42890 76a6d48fcfe104a8a28d0b764aa180d4 320 SUPERFAMILY SSF51735 118 260 1.5E-19 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_42890 76a6d48fcfe104a8a28d0b764aa180d4 320 Gene3D G3DSA:3.90.180.10 2 93 1.2E-6 T 13-10-2018 RAM_42890 76a6d48fcfe104a8a28d0b764aa180d4 320 Gene3D G3DSA:3.40.50.720 131 255 3.0E-21 T 13-10-2018 RAM_42890 76a6d48fcfe104a8a28d0b764aa180d4 320 Gene3D G3DSA:3.90.180.10 102 292 3.0E-21 T 13-10-2018 RAM_42890 76a6d48fcfe104a8a28d0b764aa180d4 320 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 143 205 7.9E-6 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 RAM_42890 76a6d48fcfe104a8a28d0b764aa180d4 320 SUPERFAMILY SSF50129 3 152 4.72E-16 T 13-10-2018 IPR011032 GroES-like superfamily RAM_27290 dc990d1e51dede5b0de4cc8c0dcbab97 218 Gene3D G3DSA:1.10.357.10 10 211 1.9E-50 T 13-10-2018 RAM_27290 dc990d1e51dede5b0de4cc8c0dcbab97 218 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 65 1.8E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_27290 dc990d1e51dede5b0de4cc8c0dcbab97 218 SUPERFAMILY SSF46689 7 90 1.25E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_12815 f3f3acfaaed59465a10b824176aa9efa 526 Gene3D G3DSA:3.50.50.60 1 206 5.9E-54 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_12815 f3f3acfaaed59465a10b824176aa9efa 526 Gene3D G3DSA:3.50.50.60 440 516 3.6E-18 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_12815 f3f3acfaaed59465a10b824176aa9efa 526 SUPERFAMILY SSF56425 301 456 2.37E-14 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_12815 f3f3acfaaed59465a10b824176aa9efa 526 Pfam PF00890 FAD binding domain 1 486 8.5E-50 T 13-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_12815 f3f3acfaaed59465a10b824176aa9efa 526 Gene3D G3DSA:3.90.700.10 310 439 2.2E-19 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_12815 f3f3acfaaed59465a10b824176aa9efa 526 Gene3D G3DSA:3.50.50.60 228 306 1.7E-11 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_12815 f3f3acfaaed59465a10b824176aa9efa 526 SUPERFAMILY SSF51905 1 512 1.78E-35 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_34950 d5c60b4ca4eb6e1f277d2cfb44f1f839 157 PIRSF PIRSF005384 1 149 9.1E-46 T 13-10-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 RAM_34950 d5c60b4ca4eb6e1f277d2cfb44f1f839 157 SUPERFAMILY SSF89623 2 151 1.11E-49 T 13-10-2018 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 RAM_34950 d5c60b4ca4eb6e1f277d2cfb44f1f839 157 TIGRFAM TIGR00689 rpiB_lacA_lacB: sugar-phosphate isomerase, RpiB/LacA/LacB family 3 147 1.5E-51 T 13-10-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 RAM_34950 d5c60b4ca4eb6e1f277d2cfb44f1f839 157 Gene3D G3DSA:3.40.1400.10 1 157 5.1E-57 T 13-10-2018 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 RAM_34950 d5c60b4ca4eb6e1f277d2cfb44f1f839 157 Pfam PF02502 Ribose/Galactose Isomerase 3 142 1.1E-45 T 13-10-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 RAM_34950 d5c60b4ca4eb6e1f277d2cfb44f1f839 157 TIGRFAM TIGR02133 RPI_actino: ribose 5-phosphate isomerase 1 148 1.2E-63 T 13-10-2018 IPR011860 Ribose 5-phosphate isomerase GO:0004751 RAM_21585 6f7da5b75c45169a33259ec4e386d1a6 408 PRINTS PR00359 B-class P450 signature 351 362 5.2E-48 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_21585 6f7da5b75c45169a33259ec4e386d1a6 408 PRINTS PR00359 B-class P450 signature 90 101 5.2E-48 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_21585 6f7da5b75c45169a33259ec4e386d1a6 408 PRINTS PR00359 B-class P450 signature 275 286 5.2E-48 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_21585 6f7da5b75c45169a33259ec4e386d1a6 408 PRINTS PR00359 B-class P450 signature 157 172 5.2E-48 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_21585 6f7da5b75c45169a33259ec4e386d1a6 408 PRINTS PR00359 B-class P450 signature 193 215 5.2E-48 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_21585 6f7da5b75c45169a33259ec4e386d1a6 408 PRINTS PR00359 B-class P450 signature 321 336 5.2E-48 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_21585 6f7da5b75c45169a33259ec4e386d1a6 408 PRINTS PR00359 B-class P450 signature 293 320 5.2E-48 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_21585 6f7da5b75c45169a33259ec4e386d1a6 408 PRINTS PR00359 B-class P450 signature 342 351 5.2E-48 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_21585 6f7da5b75c45169a33259ec4e386d1a6 408 PRINTS PR00359 B-class P450 signature 140 156 5.2E-48 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_21585 6f7da5b75c45169a33259ec4e386d1a6 408 SUPERFAMILY SSF48264 11 391 5.76E-82 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_21585 6f7da5b75c45169a33259ec4e386d1a6 408 Pfam PF00067 Cytochrome P450 276 372 1.8E-17 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_21585 6f7da5b75c45169a33259ec4e386d1a6 408 Gene3D G3DSA:1.10.630.10 2 403 1.6E-106 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_21585 6f7da5b75c45169a33259ec4e386d1a6 408 PRINTS PR00385 P450 superfamily signature 239 256 1.0E-5 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_21585 6f7da5b75c45169a33259ec4e386d1a6 408 PRINTS PR00385 P450 superfamily signature 275 286 1.0E-5 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_21585 6f7da5b75c45169a33259ec4e386d1a6 408 PRINTS PR00385 P450 superfamily signature 351 362 1.0E-5 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_42885 954fcf3f1f4b72053810670a823f38c0 132 Gene3D G3DSA:3.30.479.10 1 132 5.3E-26 T 13-10-2018 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily Reactome: R-HSA-1474151 RAM_42885 954fcf3f1f4b72053810670a823f38c0 132 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 4 130 1.1E-20 T 13-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 RAM_42885 954fcf3f1f4b72053810670a823f38c0 132 SUPERFAMILY SSF55620 2 129 7.78E-26 T 13-10-2018 RAM_17750 aa25fc32f4929183aa3a91e8ee58a271 943 SMART SM00382 32 195 0.0039 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_17750 aa25fc32f4929183aa3a91e8ee58a271 943 SMART SM00421 878 935 4.6E-22 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_17750 aa25fc32f4929183aa3a91e8ee58a271 943 Pfam PF00196 Bacterial regulatory proteins, luxR family 879 934 3.2E-15 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_17750 aa25fc32f4929183aa3a91e8ee58a271 943 Gene3D G3DSA:1.25.40.10 407 658 5.5E-13 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_17750 aa25fc32f4929183aa3a91e8ee58a271 943 SUPERFAMILY SSF52540 11 218 2.67E-13 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_17750 aa25fc32f4929183aa3a91e8ee58a271 943 SUPERFAMILY SSF48452 506 693 4.55E-8 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_17750 aa25fc32f4929183aa3a91e8ee58a271 943 SUPERFAMILY SSF46894 872 939 1.12E-17 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_17750 aa25fc32f4929183aa3a91e8ee58a271 943 ProSitePatterns PS00622 LuxR-type HTH domain signature. 895 922 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_17750 aa25fc32f4929183aa3a91e8ee58a271 943 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 895 911 8.2E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_17750 aa25fc32f4929183aa3a91e8ee58a271 943 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 911 923 8.2E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_17750 aa25fc32f4929183aa3a91e8ee58a271 943 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 881 895 8.2E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_17750 aa25fc32f4929183aa3a91e8ee58a271 943 Pfam PF13191 AAA ATPase domain 11 169 4.6E-24 T 13-10-2018 RAM_17750 aa25fc32f4929183aa3a91e8ee58a271 943 Gene3D G3DSA:3.40.50.300 5 197 3.6E-7 T 13-10-2018 RAM_17750 aa25fc32f4929183aa3a91e8ee58a271 943 Gene3D G3DSA:1.10.10.10 828 942 5.8E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_43380 94d4fe9fca27fd0cab9cd218da7c2d1b 100 SUPERFAMILY SSF54111 1 99 1.96E-43 T 13-10-2018 IPR036463 Urease, gamma subunit superfamily GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RAM_43380 94d4fe9fca27fd0cab9cd218da7c2d1b 100 Pfam PF00547 Urease, gamma subunit 1 99 5.5E-46 T 13-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RAM_43380 94d4fe9fca27fd0cab9cd218da7c2d1b 100 Hamap MF_00739 Urease subunit gamma [ureA]. 1 100 33.497 T 13-10-2018 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RAM_43380 94d4fe9fca27fd0cab9cd218da7c2d1b 100 TIGRFAM TIGR00193 urease_gam: urease, gamma subunit 1 99 8.1E-47 T 13-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RAM_43380 94d4fe9fca27fd0cab9cd218da7c2d1b 100 PIRSF PIRSF001223 1 100 6.4E-49 T 13-10-2018 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RAM_43380 94d4fe9fca27fd0cab9cd218da7c2d1b 100 ProDom PD002319 SUBUNIT GAMMA HYDROLASE UREASE UREA AMIDOHYDROLASE UREASE ALPHA GAMMA/BETA METAL-BINDING 9 99 2.0E-33 T 13-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RAM_43380 94d4fe9fca27fd0cab9cd218da7c2d1b 100 Gene3D G3DSA:3.30.280.10 1 100 2.3E-47 T 13-10-2018 IPR036463 Urease, gamma subunit superfamily GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RAM_44585 265cc083221ba4b1f76f733f6eba8fac 193 Gene3D G3DSA:3.10.620.30 2 146 2.0E-16 T 13-10-2018 RAM_44585 265cc083221ba4b1f76f733f6eba8fac 193 SMART SM00460 76 131 0.0034 T 13-10-2018 IPR002931 Transglutaminase-like RAM_44585 265cc083221ba4b1f76f733f6eba8fac 193 Pfam PF01841 Transglutaminase-like superfamily 30 129 6.9E-14 T 13-10-2018 IPR002931 Transglutaminase-like RAM_44585 265cc083221ba4b1f76f733f6eba8fac 193 SUPERFAMILY SSF54001 25 140 1.4E-21 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily RAM_34170 404a5d1c48273b2b9e67a2aee405f9ea 420 SUPERFAMILY SSF52540 3 228 4.57E-53 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_34170 404a5d1c48273b2b9e67a2aee405f9ea 420 TIGRFAM TIGR02034 CysN: sulfate adenylyltransferase, large subunit 5 415 3.1E-165 T 13-10-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 RAM_34170 404a5d1c48273b2b9e67a2aee405f9ea 420 Gene3D G3DSA:2.40.30.10 311 415 5.5E-27 T 13-10-2018 RAM_34170 404a5d1c48273b2b9e67a2aee405f9ea 420 PRINTS PR00315 GTP-binding elongation factor signature 6 19 8.1E-13 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_34170 404a5d1c48273b2b9e67a2aee405f9ea 420 PRINTS PR00315 GTP-binding elongation factor signature 65 73 8.1E-13 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_34170 404a5d1c48273b2b9e67a2aee405f9ea 420 PRINTS PR00315 GTP-binding elongation factor signature 85 95 8.1E-13 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_34170 404a5d1c48273b2b9e67a2aee405f9ea 420 PRINTS PR00315 GTP-binding elongation factor signature 101 112 8.1E-13 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_34170 404a5d1c48273b2b9e67a2aee405f9ea 420 PRINTS PR00315 GTP-binding elongation factor signature 138 147 8.1E-13 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_34170 404a5d1c48273b2b9e67a2aee405f9ea 420 Gene3D G3DSA:2.40.30.10 219 309 1.4E-23 T 13-10-2018 RAM_34170 404a5d1c48273b2b9e67a2aee405f9ea 420 Pfam PF00009 Elongation factor Tu GTP binding domain 5 203 1.3E-38 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_34170 404a5d1c48273b2b9e67a2aee405f9ea 420 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 58 73 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site RAM_34170 404a5d1c48273b2b9e67a2aee405f9ea 420 Gene3D G3DSA:3.40.50.300 2 216 1.5E-63 T 13-10-2018 RAM_34170 404a5d1c48273b2b9e67a2aee405f9ea 420 SUPERFAMILY SSF50465 313 415 1.39E-23 T 13-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal RAM_34170 404a5d1c48273b2b9e67a2aee405f9ea 420 SUPERFAMILY SSF50447 217 310 5.2E-20 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RAM_23130 fcd206420cd6ab92475318b72a65dd36 353 Gene3D G3DSA:3.40.50.2300 153 353 4.1E-124 T 13-10-2018 RAM_23130 fcd206420cd6ab92475318b72a65dd36 353 Pfam PF13407 Periplasmic binding protein domain 54 310 2.4E-53 T 13-10-2018 IPR025997 Periplasmic binding protein RAM_23130 fcd206420cd6ab92475318b72a65dd36 353 Gene3D G3DSA:3.40.50.2300 52 337 4.1E-124 T 13-10-2018 RAM_23130 fcd206420cd6ab92475318b72a65dd36 353 SUPERFAMILY SSF53822 51 353 2.55E-62 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_23130 fcd206420cd6ab92475318b72a65dd36 353 TIGRFAM TIGR02637 RhaS: rhamnose ABC transporter, rhamnose-binding protein 54 353 6.4E-118 T 13-10-2018 IPR013459 Rhamnose ABC transporter, substrate-binding protein RhaS GO:0015762 RAM_07700 3d0e1ccecdd80eef01b9faa6b3affe13 380 SMART SM00854 54 298 2.2E-77 T 13-10-2018 IPR019079 Capsule synthesis protein, CapA RAM_07700 3d0e1ccecdd80eef01b9faa6b3affe13 380 Pfam PF09587 Bacterial capsule synthesis protein PGA_cap 55 296 4.1E-70 T 13-10-2018 IPR019079 Capsule synthesis protein, CapA RAM_07700 3d0e1ccecdd80eef01b9faa6b3affe13 380 Gene3D G3DSA:3.60.21.10 108 347 4.7E-12 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like RAM_07700 3d0e1ccecdd80eef01b9faa6b3affe13 380 SUPERFAMILY SSF56300 54 330 2.47E-37 T 13-10-2018 RAM_42505 305ebb17c572a8f42034d97c5d2cc994 699 Gene3D G3DSA:1.20.1640.10 483 685 3.7E-6 T 13-10-2018 RAM_42505 305ebb17c572a8f42034d97c5d2cc994 699 SUPERFAMILY SSF82866 98 322 4.71E-26 T 13-10-2018 RAM_42505 305ebb17c572a8f42034d97c5d2cc994 699 Gene3D G3DSA:1.20.1640.10 126 327 1.5E-5 T 13-10-2018 RAM_42505 305ebb17c572a8f42034d97c5d2cc994 699 Pfam PF03176 MMPL family 385 682 1.4E-26 T 13-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 RAM_42505 305ebb17c572a8f42034d97c5d2cc994 699 Pfam PF03176 MMPL family 80 353 9.1E-38 T 13-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 RAM_42505 305ebb17c572a8f42034d97c5d2cc994 699 SUPERFAMILY SSF82866 446 682 3.66E-28 T 13-10-2018 RAM_36895 fe03646253de7d3d27122ffa9f5d1624 252 Gene3D G3DSA:1.10.10.10 3 72 2.4E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_36895 fe03646253de7d3d27122ffa9f5d1624 252 Pfam PF01614 Bacterial transcriptional regulator 123 241 1.2E-27 T 13-10-2018 IPR014757 Transcription regulator IclR, C-terminal RAM_36895 fe03646253de7d3d27122ffa9f5d1624 252 Pfam PF09339 IclR helix-turn-helix domain 9 58 1.1E-13 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RAM_36895 fe03646253de7d3d27122ffa9f5d1624 252 SUPERFAMILY SSF55781 69 243 1.63E-43 T 13-10-2018 RAM_36895 fe03646253de7d3d27122ffa9f5d1624 252 Gene3D G3DSA:3.30.450.40 73 249 1.1E-50 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_36895 fe03646253de7d3d27122ffa9f5d1624 252 SUPERFAMILY SSF46785 9 78 7.44E-13 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_36895 fe03646253de7d3d27122ffa9f5d1624 252 SMART SM00346 6 94 1.5E-20 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RAM_23695 d1d738f98ba6d2f4f1c2efc249a06cd7 278 PIRSF PIRSF015853 4 275 9.6E-91 T 13-10-2018 IPR007035 Peptidase M55, D-aminopeptidase RAM_23695 d1d738f98ba6d2f4f1c2efc249a06cd7 278 Pfam PF04951 D-aminopeptidase 4 263 6.5E-92 T 13-10-2018 IPR007035 Peptidase M55, D-aminopeptidase RAM_23695 d1d738f98ba6d2f4f1c2efc249a06cd7 278 SUPERFAMILY SSF63992 4 270 1.7E-84 T 13-10-2018 IPR036177 Peptidase M55, D-aminopeptidase superfamily RAM_23695 d1d738f98ba6d2f4f1c2efc249a06cd7 278 Gene3D G3DSA:3.40.50.10780 4 215 2.9E-84 T 13-10-2018 IPR027476 D-aminopeptidase, N-terminal RAM_23695 d1d738f98ba6d2f4f1c2efc249a06cd7 278 Gene3D G3DSA:3.30.1360.130 121 262 2.9E-84 T 13-10-2018 RAM_12545 2a21d668565aa705a62c8ffd503ab479 404 Gene3D G3DSA:3.20.20.80 44 395 1.3E-142 T 13-10-2018 RAM_12545 2a21d668565aa705a62c8ffd503ab479 404 Pfam PF00704 Glycosyl hydrolases family 18 41 392 9.3E-77 T 13-10-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 RAM_12545 2a21d668565aa705a62c8ffd503ab479 404 SMART SM00636 40 392 9.2E-115 T 13-10-2018 IPR011583 Chitinase II GO:0008061 RAM_12545 2a21d668565aa705a62c8ffd503ab479 404 ProSitePatterns PS01095 Chitinases family 18 active site. 174 182 - T 13-10-2018 IPR001579 Glycoside hydrolase, chitinase active site GO:0004553|GO:0005975 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 RAM_12545 2a21d668565aa705a62c8ffd503ab479 404 SUPERFAMILY SSF51445 39 399 7.24E-86 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_12545 2a21d668565aa705a62c8ffd503ab479 404 SUPERFAMILY SSF54556 304 363 1.3E-13 T 13-10-2018 IPR029070 Chitinase insertion domain superfamily RAM_12545 2a21d668565aa705a62c8ffd503ab479 404 Gene3D G3DSA:3.10.50.10 307 367 1.3E-142 T 13-10-2018 IPR029070 Chitinase insertion domain superfamily RAM_04170 c6b9d9e84b69bb71da24faf171872de4 249 SUPERFAMILY SSF53335 5 240 2.59E-33 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_04170 c6b9d9e84b69bb71da24faf171872de4 249 Pfam PF13649 Methyltransferase domain 40 132 5.6E-18 T 13-10-2018 RAM_04170 c6b9d9e84b69bb71da24faf171872de4 249 Gene3D G3DSA:3.40.50.150 37 231 2.0E-34 T 13-10-2018 RAM_04170 c6b9d9e84b69bb71da24faf171872de4 249 Gene3D G3DSA:2.20.25.570 140 198 2.0E-34 T 13-10-2018 RAM_19610 5a2c8004c540b9150aea77c965abd53d 191 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 1.2E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_19610 5a2c8004c540b9150aea77c965abd53d 191 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 1.2E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_19610 5a2c8004c540b9150aea77c965abd53d 191 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 58 7.8E-16 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_19610 5a2c8004c540b9150aea77c965abd53d 191 SUPERFAMILY SSF46689 5 67 3.73E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_19610 5a2c8004c540b9150aea77c965abd53d 191 Gene3D G3DSA:1.10.10.60 3 51 2.1E-20 T 13-10-2018 RAM_19610 5a2c8004c540b9150aea77c965abd53d 191 ProSitePatterns PS01081 TetR-type HTH domain signature. 27 58 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RAM_19610 5a2c8004c540b9150aea77c965abd53d 191 Gene3D G3DSA:1.10.357.10 53 187 9.7E-18 T 13-10-2018 RAM_25840 3bb86da7964869de1c49cbe9f7937a9e 281 Gene3D G3DSA:1.10.3720.10 69 263 8.5E-27 T 13-10-2018 IPR035906 MetI-like superfamily RAM_25840 3bb86da7964869de1c49cbe9f7937a9e 281 SUPERFAMILY SSF161098 72 254 8.9E-33 T 13-10-2018 IPR035906 MetI-like superfamily RAM_25840 3bb86da7964869de1c49cbe9f7937a9e 281 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 94 257 9.3E-30 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_32405 dc37251af08109b10053e9507c519970 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 22.405 T 13-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_32405 dc37251af08109b10053e9507c519970 89 Gene3D G3DSA:1.10.287.10 1 89 5.6E-33 T 13-10-2018 RAM_32405 dc37251af08109b10053e9507c519970 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 11 88 8.0E-21 T 13-10-2018 RAM_32405 dc37251af08109b10053e9507c519970 89 SMART SM01387 8 88 2.9E-51 T 13-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_32405 dc37251af08109b10053e9507c519970 89 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 13-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_32405 dc37251af08109b10053e9507c519970 89 SUPERFAMILY SSF47060 3 89 7.95E-35 T 13-10-2018 IPR009068 S15/NS1, RNA-binding RAM_32405 dc37251af08109b10053e9507c519970 89 Pfam PF00312 Ribosomal protein S15 8 88 1.9E-36 T 13-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_32405 dc37251af08109b10053e9507c519970 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 5 89 9.0E-39 T 13-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_18670 b4a6203a60b2a89ec718f09595931806 169 Pfam PF12680 SnoaL-like domain 42 143 2.1E-12 T 13-10-2018 IPR037401 SnoaL-like domain RAM_18670 b4a6203a60b2a89ec718f09595931806 169 Gene3D G3DSA:3.10.450.50 39 169 2.3E-33 T 13-10-2018 RAM_18670 b4a6203a60b2a89ec718f09595931806 169 SUPERFAMILY SSF54427 41 161 3.59E-18 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_39600 b23422231073a8689999087cfe5c5690 283 Pfam PF00797 N-acetyltransferase 23 228 4.4E-36 T 13-10-2018 IPR001447 Arylamine N-acetyltransferase GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 RAM_39600 b23422231073a8689999087cfe5c5690 283 Gene3D G3DSA:3.30.2140.10 5 250 1.3E-62 T 13-10-2018 RAM_39600 b23422231073a8689999087cfe5c5690 283 SUPERFAMILY SSF54001 3 252 1.54E-43 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily RAM_39600 b23422231073a8689999087cfe5c5690 283 Gene3D G3DSA:2.40.128.150 84 184 1.3E-62 T 13-10-2018 RAM_18590 c886b94a7ee8551b02a18aab3b7c86ae 381 SUPERFAMILY SSF54593 9 120 6.33E-18 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_18590 c886b94a7ee8551b02a18aab3b7c86ae 381 ProDom PD068376 ORF2 SECRETED GLNII PRECURSOR SIGNAL 240 302 8.0E-16 T 13-10-2018 RAM_18590 c886b94a7ee8551b02a18aab3b7c86ae 381 SUPERFAMILY SSF54593 133 237 1.09E-7 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_18590 c886b94a7ee8551b02a18aab3b7c86ae 381 Gene3D G3DSA:3.10.180.10 124 240 1.9E-12 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_18590 c886b94a7ee8551b02a18aab3b7c86ae 381 Gene3D G3DSA:3.10.180.10 2 123 8.9E-26 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_17165 95f1d023db0941244a6794c1803825e2 375 Gene3D G3DSA:1.10.10.2840 234 365 1.3E-21 T 13-10-2018 RAM_17165 95f1d023db0941244a6794c1803825e2 375 Pfam PF13556 PucR C-terminal helix-turn-helix domain 304 360 1.0E-16 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain RAM_04415 7e3f92eb949ac6ec22ee92d09cd8f23d 834 Pfam PF00270 DEAD/DEAH box helicase 33 178 4.3E-8 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RAM_04415 7e3f92eb949ac6ec22ee92d09cd8f23d 834 Pfam PF00271 Helicase conserved C-terminal domain 284 363 2.8E-6 T 13-10-2018 IPR001650 Helicase, C-terminal RAM_04415 7e3f92eb949ac6ec22ee92d09cd8f23d 834 SMART SM00487 27 210 1.2E-14 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RAM_04415 7e3f92eb949ac6ec22ee92d09cd8f23d 834 SUPERFAMILY SSF52540 44 375 3.78E-40 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_04415 7e3f92eb949ac6ec22ee92d09cd8f23d 834 Gene3D G3DSA:3.40.50.300 17 203 3.4E-37 T 13-10-2018 RAM_04415 7e3f92eb949ac6ec22ee92d09cd8f23d 834 Pfam PF12029 Domain of unknown function (DUF3516) 374 831 3.3E-215 T 13-10-2018 IPR021904 Protein of unknown function DUF3516 RAM_04415 7e3f92eb949ac6ec22ee92d09cd8f23d 834 Gene3D G3DSA:3.40.50.300 211 381 7.4E-40 T 13-10-2018 RAM_04415 7e3f92eb949ac6ec22ee92d09cd8f23d 834 SMART SM00490 277 363 9.1E-14 T 13-10-2018 IPR001650 Helicase, C-terminal RAM_13685 238f159603c5e13dafb7b0406bf45165 533 Gene3D G3DSA:3.90.1150.10 395 523 1.5E-28 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_13685 238f159603c5e13dafb7b0406bf45165 533 ProSitePatterns PS00392 DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 334 355 - T 13-10-2018 IPR021115 Pyridoxal-phosphate binding site GO:0016831 RAM_13685 238f159603c5e13dafb7b0406bf45165 533 SUPERFAMILY SSF53383 114 518 4.4E-91 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_13685 238f159603c5e13dafb7b0406bf45165 533 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 124 446 8.8E-40 T 13-10-2018 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 RAM_13685 238f159603c5e13dafb7b0406bf45165 533 Gene3D G3DSA:3.40.640.10 174 393 1.1E-56 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_13685 238f159603c5e13dafb7b0406bf45165 533 Gene3D G3DSA:3.90.1150.170 97 173 2.9E-7 T 13-10-2018 RAM_06095 698e072c9a0dc428b86f78d64d6a6219 473 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 246 253 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 RAM_06095 698e072c9a0dc428b86f78d64d6a6219 473 SUPERFAMILY SSF53720 3 470 3.93E-158 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RAM_06095 698e072c9a0dc428b86f78d64d6a6219 473 Pfam PF00171 Aldehyde dehydrogenase family 12 469 3.6E-160 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RAM_06095 698e072c9a0dc428b86f78d64d6a6219 473 Gene3D G3DSA:3.40.309.10 250 438 8.6E-166 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RAM_06095 698e072c9a0dc428b86f78d64d6a6219 473 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 274 285 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 RAM_06095 698e072c9a0dc428b86f78d64d6a6219 473 Gene3D G3DSA:3.40.605.10 23 463 8.6E-166 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RAM_42295 cfb5ff28282674f9701d71c9fa13c3c9 326 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 136 151 - T 13-10-2018 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 RAM_42295 cfb5ff28282674f9701d71c9fa13c3c9 326 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 12 128 2.7E-44 T 13-10-2018 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 RAM_42295 cfb5ff28282674f9701d71c9fa13c3c9 326 Gene3D G3DSA:3.40.50.2020 15 310 9.2E-111 T 13-10-2018 RAM_42295 cfb5ff28282674f9701d71c9fa13c3c9 326 Pfam PF14572 Phosphoribosyl synthetase-associated domain 216 322 1.6E-21 T 13-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 RAM_42295 cfb5ff28282674f9701d71c9fa13c3c9 326 SUPERFAMILY SSF53271 77 314 8.56E-60 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like RAM_42295 cfb5ff28282674f9701d71c9fa13c3c9 326 SMART SM01400 12 128 8.1E-69 T 13-10-2018 RAM_42295 cfb5ff28282674f9701d71c9fa13c3c9 326 Hamap MF_00583_B Putative ribose-phosphate pyrophosphokinase [prs]. 12 323 44.98 T 13-10-2018 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type GO:0004749 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 RAM_42295 cfb5ff28282674f9701d71c9fa13c3c9 326 Gene3D G3DSA:3.40.50.2020 155 299 9.2E-111 T 13-10-2018 RAM_42295 cfb5ff28282674f9701d71c9fa13c3c9 326 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 13 323 4.4E-115 T 13-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 RAM_38890 2d664b6ee321846e158c8df9b2673b93 391 SUPERFAMILY SSF52777 166 388 6.23E-71 T 13-10-2018 RAM_38890 2d664b6ee321846e158c8df9b2673b93 391 SUPERFAMILY SSF51230 3 76 1.44E-21 T 13-10-2018 IPR011053 Single hybrid motif RAM_38890 2d664b6ee321846e158c8df9b2673b93 391 Pfam PF02817 e3 binding domain 123 156 5.5E-12 T 13-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 RAM_38890 2d664b6ee321846e158c8df9b2673b93 391 Gene3D G3DSA:3.30.559.10 157 388 1.9E-77 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_38890 2d664b6ee321846e158c8df9b2673b93 391 Pfam PF00364 Biotin-requiring enzyme 4 73 2.0E-17 T 13-10-2018 IPR000089 Biotin/lipoyl attachment RAM_38890 2d664b6ee321846e158c8df9b2673b93 391 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 166 387 3.2E-71 T 13-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 RAM_38890 2d664b6ee321846e158c8df9b2673b93 391 Gene3D G3DSA:4.10.320.10 117 156 1.3E-11 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 RAM_38890 2d664b6ee321846e158c8df9b2673b93 391 SUPERFAMILY SSF47005 120 160 3.27E-10 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 RAM_38890 2d664b6ee321846e158c8df9b2673b93 391 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 26 55 - T 13-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 RAM_38890 2d664b6ee321846e158c8df9b2673b93 391 Gene3D G3DSA:2.40.50.100 3 77 1.1E-20 T 13-10-2018 RAM_43765 2f60c67dced65a4b8d4888c3a5aa65a3 493 Pfam PF05331 Protein of unknown function (DUF742) 383 493 8.0E-32 T 13-10-2018 IPR007995 Protein of unknown function DUF742 RAM_43230 ce4b8d56aded064f7ddffe54d0af47da 89 Gene3D G3DSA:1.10.260.40 12 75 7.2E-20 T 13-10-2018 RAM_43230 ce4b8d56aded064f7ddffe54d0af47da 89 SMART SM00530 15 70 1.7E-10 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_43230 ce4b8d56aded064f7ddffe54d0af47da 89 SUPERFAMILY SSF47413 12 75 2.73E-15 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_43230 ce4b8d56aded064f7ddffe54d0af47da 89 Pfam PF01381 Helix-turn-helix 19 68 5.7E-10 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_20780 88ec1a7a4cf2b8316fb300db511aa227 366 Gene3D G3DSA:3.90.550.10 32 259 1.6E-26 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_20780 88ec1a7a4cf2b8316fb300db511aa227 366 Pfam PF13641 Glycosyltransferase like family 2 44 254 4.9E-18 T 13-10-2018 RAM_20780 88ec1a7a4cf2b8316fb300db511aa227 366 SUPERFAMILY SSF53448 43 252 2.11E-31 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_07725 5b9ce24455eacae20d273665d1b49b30 435 SUPERFAMILY SSF63825 58 237 3.79E-7 T 13-10-2018 RAM_13205 180f3f5121d58003abd9729921d56083 735 Gene3D G3DSA:2.60.40.10 10 228 2.5E-79 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_13205 180f3f5121d58003abd9729921d56083 735 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 127 213 7.7E-22 T 13-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 RAM_13205 180f3f5121d58003abd9729921d56083 735 SUPERFAMILY SSF81296 22 116 2.45E-17 T 13-10-2018 IPR014756 Immunoglobulin E-set RAM_13205 180f3f5121d58003abd9729921d56083 735 Pfam PF00128 Alpha amylase, catalytic domain 273 347 4.7E-8 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RAM_13205 180f3f5121d58003abd9729921d56083 735 Gene3D G3DSA:2.60.40.1180 624 728 6.5E-42 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta RAM_13205 180f3f5121d58003abd9729921d56083 735 SUPERFAMILY SSF51011 624 725 2.88E-34 T 13-10-2018 RAM_13205 180f3f5121d58003abd9729921d56083 735 SMART SM00642 256 628 2.6E-8 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RAM_13205 180f3f5121d58003abd9729921d56083 735 SUPERFAMILY SSF51445 186 617 1.87E-115 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_13205 180f3f5121d58003abd9729921d56083 735 SUPERFAMILY SSF81296 145 206 1.89E-10 T 13-10-2018 IPR014756 Immunoglobulin E-set RAM_13205 180f3f5121d58003abd9729921d56083 735 Hamap MF_00685 1,4-alpha-glucan branching enzyme GlgB [glgB]. 103 727 45.177 T 13-10-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 RAM_13205 180f3f5121d58003abd9729921d56083 735 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 629 724 4.5E-21 T 13-10-2018 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 RAM_13205 180f3f5121d58003abd9729921d56083 735 PIRSF PIRSF000463 15 732 3.4E-291 T 13-10-2018 IPR037439 1,4-alpha-glucan-branching enzyme GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900|Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 RAM_13205 180f3f5121d58003abd9729921d56083 735 Gene3D G3DSA:3.20.20.80 229 623 1.9E-174 T 13-10-2018 RAM_13205 180f3f5121d58003abd9729921d56083 735 TIGRFAM TIGR01515 branching_enzym: 1,4-alpha-glucan branching enzyme 111 724 1.2E-287 T 13-10-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 RAM_30435 abb45f8701f00f225edec3bd33d6c9cb 491 SMART SM00220 6 252 8.1E-50 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_30435 abb45f8701f00f225edec3bd33d6c9cb 491 Pfam PF00069 Protein kinase domain 6 250 2.1E-43 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_30435 abb45f8701f00f225edec3bd33d6c9cb 491 Gene3D G3DSA:3.30.200.20 1 85 9.6E-19 T 13-10-2018 RAM_30435 abb45f8701f00f225edec3bd33d6c9cb 491 SUPERFAMILY SSF56112 3 255 8.33E-67 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_30435 abb45f8701f00f225edec3bd33d6c9cb 491 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 12 35 - T 13-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 RAM_30435 abb45f8701f00f225edec3bd33d6c9cb 491 Gene3D G3DSA:1.10.510.10 86 257 4.1E-42 T 13-10-2018 RAM_30435 abb45f8701f00f225edec3bd33d6c9cb 491 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 122 134 - T 13-10-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 RAM_17605 290a1ff13baa1943009c7dce7e46e710 171 Gene3D G3DSA:3.40.710.10 6 170 7.5E-37 T 13-10-2018 RAM_17605 290a1ff13baa1943009c7dce7e46e710 171 Pfam PF13354 Beta-lactamase enzyme family 47 137 8.5E-19 T 13-10-2018 RAM_17605 290a1ff13baa1943009c7dce7e46e710 171 SUPERFAMILY SSF56601 49 166 1.66E-19 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_27120 c25dc71c9f1527c5159d0bf956ad52c0 208 Gene3D G3DSA:1.20.120.1760 7 203 3.8E-55 T 13-10-2018 RAM_27120 c25dc71c9f1527c5159d0bf956ad52c0 208 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 69 91 - T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RAM_27120 c25dc71c9f1527c5159d0bf956ad52c0 208 Pfam PF01066 CDP-alcohol phosphatidyltransferase 27 91 4.9E-10 T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RAM_11770 af284d4f066800353ab3c4be44ced9f4 260 Gene3D G3DSA:3.40.50.720 2 259 1.3E-80 T 13-10-2018 RAM_11770 af284d4f066800353ab3c4be44ced9f4 260 SUPERFAMILY SSF51735 15 258 1.29E-75 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_11770 af284d4f066800353ab3c4be44ced9f4 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 139 155 5.1E-36 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_11770 af284d4f066800353ab3c4be44ced9f4 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 91 102 5.1E-36 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_11770 af284d4f066800353ab3c4be44ced9f4 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 186 203 5.1E-36 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_11770 af284d4f066800353ab3c4be44ced9f4 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 184 5.1E-36 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_11770 af284d4f066800353ab3c4be44ced9f4 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 222 242 5.1E-36 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_11770 af284d4f066800353ab3c4be44ced9f4 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 17 34 5.1E-36 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_11770 af284d4f066800353ab3c4be44ced9f4 260 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 16 186 4.1E-4 T 13-10-2018 RAM_11770 af284d4f066800353ab3c4be44ced9f4 260 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 22 257 3.5E-60 T 13-10-2018 RAM_27025 078a8692361fb2cde8c56afd981ce3dd 206 TIGRFAM TIGR03800 PLP_synth_Pdx2: pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2 7 200 3.9E-70 T 13-10-2018 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO GO:0004359|GO:0042819|GO:0042823 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 RAM_27025 078a8692361fb2cde8c56afd981ce3dd 206 Gene3D G3DSA:3.40.50.880 3 206 4.5E-74 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_27025 078a8692361fb2cde8c56afd981ce3dd 206 Pfam PF01174 SNO glutamine amidotransferase family 9 202 1.0E-56 T 13-10-2018 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO GO:0004359|GO:0042819|GO:0042823 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 RAM_27025 078a8692361fb2cde8c56afd981ce3dd 206 SUPERFAMILY SSF52317 6 204 5.07E-49 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_27025 078a8692361fb2cde8c56afd981ce3dd 206 PIRSF PIRSF005639 1 206 1.0E-72 T 13-10-2018 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO GO:0004359|GO:0042819|GO:0042823 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 RAM_27025 078a8692361fb2cde8c56afd981ce3dd 206 ProSitePatterns PS01236 PdxT/SNO family family signature. 44 54 - T 13-10-2018 IPR021196 PdxT/SNO family, conserved site KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 RAM_27025 078a8692361fb2cde8c56afd981ce3dd 206 Hamap MF_01615 Pyridoxal 5'-phosphate synthase subunit PdxT [pdxT]. 7 201 38.333 T 13-10-2018 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO GO:0004359|GO:0042819|GO:0042823 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 RAM_23995 e4e7db6198b5d691f91ecda8cc5f439a 201 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 65 9.8E-17 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_23995 e4e7db6198b5d691f91ecda8cc5f439a 201 Gene3D G3DSA:1.10.10.60 2 61 2.5E-18 T 13-10-2018 RAM_23995 e4e7db6198b5d691f91ecda8cc5f439a 201 Gene3D G3DSA:1.10.357.10 62 194 4.7E-15 T 13-10-2018 RAM_23995 e4e7db6198b5d691f91ecda8cc5f439a 201 SUPERFAMILY SSF48498 88 187 2.33E-8 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_23995 e4e7db6198b5d691f91ecda8cc5f439a 201 SUPERFAMILY SSF46689 7 91 8.75E-20 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_23995 e4e7db6198b5d691f91ecda8cc5f439a 201 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 20 33 4.4E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_23995 e4e7db6198b5d691f91ecda8cc5f439a 201 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 41 64 4.4E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_23995 e4e7db6198b5d691f91ecda8cc5f439a 201 ProSitePatterns PS01081 TetR-type HTH domain signature. 32 63 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RAM_01300 da64c750737b29d45181f69aa96fe1e2 268 Pfam PF00005 ABC transporter 27 165 4.2E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_01300 da64c750737b29d45181f69aa96fe1e2 268 Gene3D G3DSA:3.40.50.300 4 261 1.7E-66 T 13-10-2018 RAM_01300 da64c750737b29d45181f69aa96fe1e2 268 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_01300 da64c750737b29d45181f69aa96fe1e2 268 SUPERFAMILY SSF52540 5 243 1.04E-66 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_01300 da64c750737b29d45181f69aa96fe1e2 268 SMART SM00382 35 215 1.4E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_39605 2e28dccf80edb7996e41a32e2d239afe 240 Gene3D G3DSA:3.40.50.1860 4 223 5.9E-78 T 13-10-2018 RAM_39605 2e28dccf80edb7996e41a32e2d239afe 240 SUPERFAMILY SSF53681 1 116 7.19E-34 T 13-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RAM_39605 2e28dccf80edb7996e41a32e2d239afe 240 Gene3D G3DSA:3.40.50.1860 104 214 5.9E-78 T 13-10-2018 RAM_39605 2e28dccf80edb7996e41a32e2d239afe 240 Pfam PF01177 Asp/Glu/Hydantoin racemase 7 223 1.2E-55 T 13-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RAM_39605 2e28dccf80edb7996e41a32e2d239afe 240 TIGRFAM TIGR00035 asp_race: aspartate racemase 1 230 2.8E-67 T 13-10-2018 IPR004380 Aspartate racemase GO:0006520|GO:0016855 RAM_39605 2e28dccf80edb7996e41a32e2d239afe 240 SUPERFAMILY SSF53681 118 228 2.94E-32 T 13-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RAM_21525 dc2f4187f9040e10e8cbd7f8cb3ffcac 394 Gene3D G3DSA:3.40.710.10 27 371 1.0E-89 T 13-10-2018 RAM_21525 dc2f4187f9040e10e8cbd7f8cb3ffcac 394 SUPERFAMILY SSF56601 42 338 3.98E-71 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_21525 dc2f4187f9040e10e8cbd7f8cb3ffcac 394 Pfam PF00144 Beta-lactamase 23 337 8.5E-59 T 13-10-2018 IPR001466 Beta-lactamase-related RAM_07335 3959e8bfd9a546d87ca4ab9324cf9eda 305 PRINTS PR00069 Aldo-keto reductase signature 146 163 6.9E-8 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_07335 3959e8bfd9a546d87ca4ab9324cf9eda 305 PRINTS PR00069 Aldo-keto reductase signature 42 66 6.9E-8 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_07335 3959e8bfd9a546d87ca4ab9324cf9eda 305 PRINTS PR00069 Aldo-keto reductase signature 220 244 6.9E-8 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_07335 3959e8bfd9a546d87ca4ab9324cf9eda 305 Gene3D G3DSA:3.20.20.100 10 303 3.9E-53 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_07335 3959e8bfd9a546d87ca4ab9324cf9eda 305 SUPERFAMILY SSF51430 15 289 2.88E-53 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_07335 3959e8bfd9a546d87ca4ab9324cf9eda 305 Pfam PF00248 Aldo/keto reductase family 20 286 1.1E-40 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain RAM_06835 1c90d4d1fd5d59e18f536220b94be086 568 Pfam PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain 385 507 4.2E-8 T 13-10-2018 IPR024344 Mycothiol-dependent maleylpyruvate isomerase, metal-binding domain GO:0046872 RAM_06835 1c90d4d1fd5d59e18f536220b94be086 568 Gene3D G3DSA:1.20.120.450 377 511 3.1E-7 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_06835 1c90d4d1fd5d59e18f536220b94be086 568 Gene3D G3DSA:3.40.50.1820 2 376 6.8E-119 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_06835 1c90d4d1fd5d59e18f536220b94be086 568 TIGRFAM TIGR03086 TIGR03086: TIGR03086 family protein 387 562 6.7E-27 T 13-10-2018 IPR017520 Conserved hypothetical protein CHP03086 RAM_06835 1c90d4d1fd5d59e18f536220b94be086 568 SUPERFAMILY SSF53474 6 375 1.81E-76 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_06835 1c90d4d1fd5d59e18f536220b94be086 568 SUPERFAMILY SSF109854 381 513 2.08E-13 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_06835 1c90d4d1fd5d59e18f536220b94be086 568 Pfam PF06441 Epoxide hydrolase N terminus 7 108 1.3E-33 T 13-10-2018 IPR010497 Epoxide hydrolase, N-terminal Reactome: R-HSA-211945 RAM_06835 1c90d4d1fd5d59e18f536220b94be086 568 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 385 543 9.6E-16 T 13-10-2018 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type RAM_06835 1c90d4d1fd5d59e18f536220b94be086 568 PRINTS PR00412 Epoxide hydrolase signature 99 117 5.2E-8 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_06835 1c90d4d1fd5d59e18f536220b94be086 568 PRINTS PR00412 Epoxide hydrolase signature 125 140 5.2E-8 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_06835 1c90d4d1fd5d59e18f536220b94be086 568 PRINTS PR00412 Epoxide hydrolase signature 350 372 5.2E-8 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_06835 1c90d4d1fd5d59e18f536220b94be086 568 PRINTS PR00412 Epoxide hydrolase signature 184 197 5.2E-8 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_12725 3dc25dadf497efe710b59563dad3e032 933 SUPERFAMILY SSF52540 438 678 4.49E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_12725 3dc25dadf497efe710b59563dad3e032 933 SMART SM00490 792 874 5.0E-24 T 13-10-2018 IPR001650 Helicase, C-terminal RAM_12725 3dc25dadf497efe710b59563dad3e032 933 Pfam PF12419 SNF2 Helicase protein 279 405 1.0E-34 T 13-10-2018 IPR022138 Helicase SWF/SNF-related RAM_12725 3dc25dadf497efe710b59563dad3e032 933 SMART SM00487 446 647 1.2E-26 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RAM_12725 3dc25dadf497efe710b59563dad3e032 933 Pfam PF00176 SNF2 family N-terminal domain 469 747 2.3E-51 T 13-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 RAM_12725 3dc25dadf497efe710b59563dad3e032 933 Gene3D G3DSA:3.40.50.10810 428 677 3.2E-60 T 13-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily RAM_12725 3dc25dadf497efe710b59563dad3e032 933 Pfam PF00271 Helicase conserved C-terminal domain 767 874 7.1E-17 T 13-10-2018 IPR001650 Helicase, C-terminal RAM_12725 3dc25dadf497efe710b59563dad3e032 933 Gene3D G3DSA:1.20.120.850 702 924 6.9E-88 T 13-10-2018 RAM_12725 3dc25dadf497efe710b59563dad3e032 933 Gene3D G3DSA:3.40.50.300 688 888 6.9E-88 T 13-10-2018 RAM_12725 3dc25dadf497efe710b59563dad3e032 933 SUPERFAMILY SSF52540 683 930 1.36E-67 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_08900 933b1299cbde96b9573dbb587daf985e 717 SMART SM00487 261 465 3.5E-27 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RAM_08900 933b1299cbde96b9573dbb587daf985e 717 Gene3D G3DSA:2.40.50.140 43 141 3.1E-21 T 13-10-2018 RAM_08900 933b1299cbde96b9573dbb587daf985e 717 Pfam PF00270 DEAD/DEAH box helicase 287 441 2.0E-17 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RAM_08900 933b1299cbde96b9573dbb587daf985e 717 SUPERFAMILY SSF52540 395 615 6.48E-36 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_08900 933b1299cbde96b9573dbb587daf985e 717 Gene3D G3DSA:3.40.50.300 464 646 1.8E-51 T 13-10-2018 RAM_08900 933b1299cbde96b9573dbb587daf985e 717 Gene3D G3DSA:3.40.50.300 205 455 3.6E-84 T 13-10-2018 RAM_08900 933b1299cbde96b9573dbb587daf985e 717 SUPERFAMILY SSF52540 181 459 2.14E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_08900 933b1299cbde96b9573dbb587daf985e 717 SMART SM00490 520 605 9.5E-22 T 13-10-2018 IPR001650 Helicase, C-terminal RAM_08900 933b1299cbde96b9573dbb587daf985e 717 SUPERFAMILY SSF50249 13 176 1.16E-28 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_08900 933b1299cbde96b9573dbb587daf985e 717 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 25 680 3.5E-207 T 13-10-2018 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 RAM_08900 933b1299cbde96b9573dbb587daf985e 717 Pfam PF17191 RecG wedge domain 13 173 3.7E-17 T 13-10-2018 IPR033454 RecG, wedge domain RAM_08900 933b1299cbde96b9573dbb587daf985e 717 Pfam PF00271 Helicase conserved C-terminal domain 489 604 1.7E-18 T 13-10-2018 IPR001650 Helicase, C-terminal RAM_46415 b73c2171c19789d63aa047ce888f5cb1 225 SMART SM01211 2 222 8.8E-117 T 13-10-2018 RAM_46415 b73c2171c19789d63aa047ce888f5cb1 225 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 4 207 1.8E-33 T 13-10-2018 RAM_46415 b73c2171c19789d63aa047ce888f5cb1 225 PIRSF PIRSF001586 1 225 8.8E-79 T 13-10-2018 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 RAM_46415 b73c2171c19789d63aa047ce888f5cb1 225 Gene3D G3DSA:3.40.50.880 2 223 2.9E-58 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_46415 b73c2171c19789d63aa047ce888f5cb1 225 Hamap MF_00421 Phosphoribosylformylglycinamidine synthase subunit PurQ [purQ]. 3 220 38.774 T 13-10-2018 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 RAM_46415 b73c2171c19789d63aa047ce888f5cb1 225 SUPERFAMILY SSF52317 3 221 1.72E-69 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_46415 b73c2171c19789d63aa047ce888f5cb1 225 TIGRFAM TIGR01737 FGAM_synth_I: phosphoribosylformylglycinamidine synthase I 4 220 8.2E-79 T 13-10-2018 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 RAM_28755 7552d40d5fb10664da749f726d4a87f8 514 Gene3D G3DSA:3.50.50.60 12 340 7.3E-109 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_28755 7552d40d5fb10664da749f726d4a87f8 514 Pfam PF01494 FAD binding domain 9 341 5.6E-83 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_28755 7552d40d5fb10664da749f726d4a87f8 514 Gene3D G3DSA:3.30.70.2450 182 266 7.3E-109 T 13-10-2018 RAM_28755 7552d40d5fb10664da749f726d4a87f8 514 SUPERFAMILY SSF51905 11 351 7.86E-59 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_28755 7552d40d5fb10664da749f726d4a87f8 514 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 310 328 6.4E-46 T 13-10-2018 RAM_28755 7552d40d5fb10664da749f726d4a87f8 514 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 11 33 6.4E-46 T 13-10-2018 RAM_28755 7552d40d5fb10664da749f726d4a87f8 514 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 153 168 6.4E-46 T 13-10-2018 RAM_28755 7552d40d5fb10664da749f726d4a87f8 514 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 292 308 6.4E-46 T 13-10-2018 RAM_28755 7552d40d5fb10664da749f726d4a87f8 514 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 328 344 6.4E-46 T 13-10-2018 RAM_28755 7552d40d5fb10664da749f726d4a87f8 514 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 277 292 6.4E-46 T 13-10-2018 RAM_28755 7552d40d5fb10664da749f726d4a87f8 514 Gene3D G3DSA:3.40.30.120 387 507 3.6E-27 T 13-10-2018 RAM_37180 d9a9b891c8474c56ecc05341802ca6e8 379 SUPERFAMILY SSF51604 93 355 2.1E-72 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RAM_37180 d9a9b891c8474c56ecc05341802ca6e8 379 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 7 105 4.6E-20 T 13-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain RAM_37180 d9a9b891c8474c56ecc05341802ca6e8 379 Gene3D G3DSA:3.30.390.10 13 355 1.6E-123 T 13-10-2018 IPR029017 Enolase-like, N-terminal RAM_37180 d9a9b891c8474c56ecc05341802ca6e8 379 SUPERFAMILY SSF54826 2 110 2.0E-28 T 13-10-2018 RAM_37180 d9a9b891c8474c56ecc05341802ca6e8 379 SMART SM00922 123 234 1.0E-18 T 13-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal RAM_37180 d9a9b891c8474c56ecc05341802ca6e8 379 ProSitePatterns PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1. 80 105 - T 13-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 RAM_37180 d9a9b891c8474c56ecc05341802ca6e8 379 Pfam PF13378 Enolase C-terminal domain-like 130 354 6.7E-58 T 13-10-2018 IPR029065 Enolase C-terminal domain-like RAM_37180 d9a9b891c8474c56ecc05341802ca6e8 379 Gene3D G3DSA:3.20.20.120 100 343 1.6E-123 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RAM_28275 d88f99c68a990ee12aeb7749b809e32f 373 SUPERFAMILY SSF53474 3 369 2.48E-87 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_28275 d88f99c68a990ee12aeb7749b809e32f 373 PRINTS PR00412 Epoxide hydrolase signature 344 366 7.2E-10 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_28275 d88f99c68a990ee12aeb7749b809e32f 373 PRINTS PR00412 Epoxide hydrolase signature 162 175 7.2E-10 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_28275 d88f99c68a990ee12aeb7749b809e32f 373 PRINTS PR00412 Epoxide hydrolase signature 98 116 7.2E-10 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_28275 d88f99c68a990ee12aeb7749b809e32f 373 PRINTS PR00412 Epoxide hydrolase signature 313 329 7.2E-10 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_28275 d88f99c68a990ee12aeb7749b809e32f 373 Pfam PF06441 Epoxide hydrolase N terminus 5 107 4.6E-27 T 13-10-2018 IPR010497 Epoxide hydrolase, N-terminal Reactome: R-HSA-211945 RAM_28275 d88f99c68a990ee12aeb7749b809e32f 373 PIRSF PIRSF001112 3 373 4.4E-88 T 13-10-2018 IPR016292 Epoxide hydrolase GO:0033961 Reactome: R-HSA-211945 RAM_28275 d88f99c68a990ee12aeb7749b809e32f 373 Gene3D G3DSA:3.40.50.1820 3 372 7.8E-119 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_29335 9d8381c37dd32788f67db12e70d86614 331 Pfam PF03916 Polysulphide reductase, NrfD 50 204 2.4E-10 T 13-10-2018 IPR005614 NrfD family RAM_29335 9d8381c37dd32788f67db12e70d86614 331 Gene3D G3DSA:1.20.1630.10 37 304 3.3E-14 T 13-10-2018 RAM_17945 c0130ddede247fe8d70e47c7a6bd3fda 704 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 407 436 1.4E-6 T 13-10-2018 IPR013425 Autotransporter-associated beta strand repeat RAM_17945 c0130ddede247fe8d70e47c7a6bd3fda 704 Pfam PF12951 Passenger-associated-transport-repeat 503 533 1.9E-5 T 13-10-2018 IPR013425 Autotransporter-associated beta strand repeat RAM_17945 c0130ddede247fe8d70e47c7a6bd3fda 704 Pfam PF12951 Passenger-associated-transport-repeat 408 436 7.8E-5 T 13-10-2018 IPR013425 Autotransporter-associated beta strand repeat RAM_43940 c582f8ecd8abdeec578afea6e7ef9d86 188 Pfam PF12840 Helix-turn-helix domain 15 70 3.6E-10 T 13-10-2018 RAM_43940 c582f8ecd8abdeec578afea6e7ef9d86 188 SMART SM00418 14 93 0.0013 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_43940 c582f8ecd8abdeec578afea6e7ef9d86 188 Gene3D G3DSA:1.10.10.10 10 133 4.1E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_43940 c582f8ecd8abdeec578afea6e7ef9d86 188 SUPERFAMILY SSF46785 10 89 1.93E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_10080 ccec4c898373e857aba48d835320bbe7 368 Gene3D G3DSA:3.20.20.70 81 355 8.3E-94 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_10080 ccec4c898373e857aba48d835320bbe7 368 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 20 366 2.2E-97 T 13-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 RAM_10080 ccec4c898373e857aba48d835320bbe7 368 Pfam PF04055 Radical SAM superfamily 122 295 7.8E-22 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RAM_10080 ccec4c898373e857aba48d835320bbe7 368 SUPERFAMILY SSF102114 112 340 5.1E-18 T 13-10-2018 RAM_10080 ccec4c898373e857aba48d835320bbe7 368 PIRSF PIRSF006004 12 368 1.4E-118 T 13-10-2018 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 RAM_10080 ccec4c898373e857aba48d835320bbe7 368 Gene3D G3DSA:1.10.150.530 18 75 2.3E-9 T 13-10-2018 RAM_10080 ccec4c898373e857aba48d835320bbe7 368 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 17 368 65.333 T 13-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 RAM_21535 42c212867f24670ffde217c28ab092b3 158 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 75 150 1.0E-26 T 13-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 RAM_21535 42c212867f24670ffde217c28ab092b3 158 Hamap MF_00772 Methylated-DNA--protein-cysteine methyltransferase [ogt]. 1 151 34.538 T 13-10-2018 IPR023546 Methylated-DNA--protein-cysteine methyltransferase GO:0003824|GO:0006281 RAM_21535 42c212867f24670ffde217c28ab092b3 158 Gene3D G3DSA:3.30.160.70 1 68 1.4E-18 T 13-10-2018 RAM_21535 42c212867f24670ffde217c28ab092b3 158 Gene3D G3DSA:1.10.10.10 71 152 2.3E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_21535 42c212867f24670ffde217c28ab092b3 158 SUPERFAMILY SSF46767 73 151 3.4E-24 T 13-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 RAM_21535 42c212867f24670ffde217c28ab092b3 158 SUPERFAMILY SSF53155 1 75 6.87E-13 T 13-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 RAM_21535 42c212867f24670ffde217c28ab092b3 158 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 75 150 9.5E-26 T 13-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 RAM_11975 0dd8d52c98194853e79334171fb16b18 174 Pfam PF00583 Acetyltransferase (GNAT) family 41 120 6.4E-9 T 13-10-2018 IPR000182 GNAT domain RAM_11975 0dd8d52c98194853e79334171fb16b18 174 SUPERFAMILY SSF55729 16 173 5.66E-17 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_11975 0dd8d52c98194853e79334171fb16b18 174 Gene3D G3DSA:3.40.630.30 7 173 3.8E-19 T 13-10-2018 RAM_16955 d9cd98a0d201aae004301240e2e2c509 212 Gene3D G3DSA:1.10.357.10 1 211 9.7E-78 T 13-10-2018 RAM_16955 d9cd98a0d201aae004301240e2e2c509 212 SUPERFAMILY SSF46689 6 80 3.4E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_16955 d9cd98a0d201aae004301240e2e2c509 212 SUPERFAMILY SSF48498 87 209 8.89E-29 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_16955 d9cd98a0d201aae004301240e2e2c509 212 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 64 4.2E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_31305 c9f180b0b77199e74ed2a46b1735d388 648 SUPERFAMILY SSF82171 19 331 5.49E-24 T 13-10-2018 RAM_31305 c9f180b0b77199e74ed2a46b1735d388 648 SUPERFAMILY SSF53474 402 648 1.69E-63 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_31305 c9f180b0b77199e74ed2a46b1735d388 648 Pfam PF07676 WD40-like Beta Propeller Repeat 53 88 5.3E-5 T 13-10-2018 IPR011659 WD40-like Beta Propeller RAM_31305 c9f180b0b77199e74ed2a46b1735d388 648 Pfam PF07676 WD40-like Beta Propeller Repeat 189 210 0.081 T 13-10-2018 IPR011659 WD40-like Beta Propeller RAM_31305 c9f180b0b77199e74ed2a46b1735d388 648 Pfam PF07676 WD40-like Beta Propeller Repeat 108 133 0.0026 T 13-10-2018 IPR011659 WD40-like Beta Propeller RAM_31305 c9f180b0b77199e74ed2a46b1735d388 648 Pfam PF00326 Prolyl oligopeptidase family 443 648 5.0E-45 T 13-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 RAM_31305 c9f180b0b77199e74ed2a46b1735d388 648 Gene3D G3DSA:2.120.10.30 30 158 4.7E-20 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RAM_31305 c9f180b0b77199e74ed2a46b1735d388 648 Gene3D G3DSA:2.120.10.30 161 338 1.6E-12 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RAM_31305 c9f180b0b77199e74ed2a46b1735d388 648 Gene3D G3DSA:3.40.50.1820 405 648 3.0E-67 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_32560 af6afafabfbe98a1bdf4e53d71a9929a 216 Pfam PF00072 Response regulator receiver domain 4 114 2.9E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_32560 af6afafabfbe98a1bdf4e53d71a9929a 216 SUPERFAMILY SSF52172 3 131 1.39E-33 T 13-10-2018 IPR011006 CheY-like superfamily RAM_32560 af6afafabfbe98a1bdf4e53d71a9929a 216 ProSitePatterns PS00622 LuxR-type HTH domain signature. 168 195 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_32560 af6afafabfbe98a1bdf4e53d71a9929a 216 SUPERFAMILY SSF46894 143 214 2.28E-19 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_32560 af6afafabfbe98a1bdf4e53d71a9929a 216 Pfam PF00196 Bacterial regulatory proteins, luxR family 154 205 1.2E-16 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_32560 af6afafabfbe98a1bdf4e53d71a9929a 216 SMART SM00448 2 115 1.3E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_32560 af6afafabfbe98a1bdf4e53d71a9929a 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 184 196 1.2E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_32560 af6afafabfbe98a1bdf4e53d71a9929a 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 168 184 1.2E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_32560 af6afafabfbe98a1bdf4e53d71a9929a 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 154 168 1.2E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_32560 af6afafabfbe98a1bdf4e53d71a9929a 216 Gene3D G3DSA:3.40.50.12740 2 214 1.6E-62 T 13-10-2018 RAM_32560 af6afafabfbe98a1bdf4e53d71a9929a 216 SMART SM00421 151 208 1.2E-22 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_11665 13fbe3408f17f307edd44e585b17086f 519 TIGRFAM TIGR00564 trpE_most: anthranilate synthase component I 40 498 1.9E-171 T 13-10-2018 IPR005256 Anthranilate synthase component I, PabB-like GO:0000162|GO:0004049 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RAM_11665 13fbe3408f17f307edd44e585b17086f 519 Gene3D G3DSA:3.60.120.10 10 509 2.0E-201 T 13-10-2018 IPR005801 ADC synthase GO:0009058 RAM_11665 13fbe3408f17f307edd44e585b17086f 519 Pfam PF00425 chorismate binding enzyme 237 490 2.5E-97 T 13-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal RAM_11665 13fbe3408f17f307edd44e585b17086f 519 PRINTS PR00095 Anthranilate synthase component I signature 352 365 6.9E-23 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RAM_11665 13fbe3408f17f307edd44e585b17086f 519 PRINTS PR00095 Anthranilate synthase component I signature 447 461 6.9E-23 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RAM_11665 13fbe3408f17f307edd44e585b17086f 519 PRINTS PR00095 Anthranilate synthase component I signature 338 351 6.9E-23 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RAM_11665 13fbe3408f17f307edd44e585b17086f 519 PRINTS PR00095 Anthranilate synthase component I signature 432 446 6.9E-23 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RAM_11665 13fbe3408f17f307edd44e585b17086f 519 SUPERFAMILY SSF56322 29 498 2.35E-155 T 13-10-2018 IPR005801 ADC synthase GO:0009058 RAM_11665 13fbe3408f17f307edd44e585b17086f 519 Pfam PF04715 Anthranilate synthase component I, N terminal region 41 181 3.0E-32 T 13-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RAM_38230 cdf1dce15d5fb5a86043c04d773ebf5e 402 SUPERFAMILY SSF48264 18 402 1.18E-85 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_38230 cdf1dce15d5fb5a86043c04d773ebf5e 402 PRINTS PR00359 B-class P450 signature 197 219 2.0E-44 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_38230 cdf1dce15d5fb5a86043c04d773ebf5e 402 PRINTS PR00359 B-class P450 signature 293 320 2.0E-44 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_38230 cdf1dce15d5fb5a86043c04d773ebf5e 402 PRINTS PR00359 B-class P450 signature 159 174 2.0E-44 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_38230 cdf1dce15d5fb5a86043c04d773ebf5e 402 PRINTS PR00359 B-class P450 signature 321 336 2.0E-44 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_38230 cdf1dce15d5fb5a86043c04d773ebf5e 402 PRINTS PR00359 B-class P450 signature 275 286 2.0E-44 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_38230 cdf1dce15d5fb5a86043c04d773ebf5e 402 PRINTS PR00359 B-class P450 signature 351 362 2.0E-44 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_38230 cdf1dce15d5fb5a86043c04d773ebf5e 402 PRINTS PR00359 B-class P450 signature 342 351 2.0E-44 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_38230 cdf1dce15d5fb5a86043c04d773ebf5e 402 PRINTS PR00359 B-class P450 signature 142 158 2.0E-44 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_38230 cdf1dce15d5fb5a86043c04d773ebf5e 402 Gene3D G3DSA:1.10.630.10 10 402 3.7E-115 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_38230 cdf1dce15d5fb5a86043c04d773ebf5e 402 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 344 353 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RAM_38230 cdf1dce15d5fb5a86043c04d773ebf5e 402 Pfam PF00067 Cytochrome P450 231 371 3.2E-17 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_38230 cdf1dce15d5fb5a86043c04d773ebf5e 402 PRINTS PR00385 P450 superfamily signature 240 257 1.5E-5 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_38230 cdf1dce15d5fb5a86043c04d773ebf5e 402 PRINTS PR00385 P450 superfamily signature 351 362 1.5E-5 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_38230 cdf1dce15d5fb5a86043c04d773ebf5e 402 PRINTS PR00385 P450 superfamily signature 342 351 1.5E-5 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_31950 6f7304e7f9c0af6b4566db7a11689e00 463 Pfam PF00668 Condensation domain 67 448 4.5E-48 T 13-10-2018 IPR001242 Condensation domain RAM_31950 6f7304e7f9c0af6b4566db7a11689e00 463 Gene3D G3DSA:3.30.559.30 210 447 2.4E-92 T 13-10-2018 RAM_31950 6f7304e7f9c0af6b4566db7a11689e00 463 Gene3D G3DSA:3.30.559.10 40 394 2.4E-92 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_31950 6f7304e7f9c0af6b4566db7a11689e00 463 SUPERFAMILY SSF52777 215 448 3.67E-39 T 13-10-2018 RAM_31950 6f7304e7f9c0af6b4566db7a11689e00 463 SUPERFAMILY SSF52777 36 226 2.22E-38 T 13-10-2018 RAM_37100 5c51079ad6966791ac258c96396302e9 231 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 2.0E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_37100 5c51079ad6966791ac258c96396302e9 231 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 2.0E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_37100 5c51079ad6966791ac258c96396302e9 231 Gene3D G3DSA:1.10.357.10 61 198 2.3E-32 T 13-10-2018 RAM_37100 5c51079ad6966791ac258c96396302e9 231 Gene3D G3DSA:1.10.10.60 13 60 1.4E-16 T 13-10-2018 RAM_37100 5c51079ad6966791ac258c96396302e9 231 SUPERFAMILY SSF46689 10 86 2.21E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_37100 5c51079ad6966791ac258c96396302e9 231 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 64 1.4E-14 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_37100 5c51079ad6966791ac258c96396302e9 231 SUPERFAMILY SSF48498 85 197 1.78E-17 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_08685 5441dd926702ccc100a12b8e317691a6 199 Gene3D G3DSA:1.10.357.10 17 197 1.3E-24 T 13-10-2018 RAM_08685 5441dd926702ccc100a12b8e317691a6 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 21 34 8.8E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_08685 5441dd926702ccc100a12b8e317691a6 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 42 65 8.8E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_08685 5441dd926702ccc100a12b8e317691a6 199 Pfam PF00440 Bacterial regulatory proteins, tetR family 21 67 3.9E-12 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_08685 5441dd926702ccc100a12b8e317691a6 199 SUPERFAMILY SSF46689 14 89 2.94E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_44385 819b4309d988c8a4ebfbcd302091c991 278 SUPERFAMILY SSF55718 209 264 3.92E-5 T 13-10-2018 IPR036527 SCP2 sterol-binding domain superfamily RAM_44385 819b4309d988c8a4ebfbcd302091c991 278 Gene3D G3DSA:1.20.120.450 5 157 5.3E-11 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_44385 819b4309d988c8a4ebfbcd302091c991 278 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 18 176 3.5E-14 T 13-10-2018 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type RAM_44385 819b4309d988c8a4ebfbcd302091c991 278 SUPERFAMILY SSF109854 5 160 4.94E-17 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_44385 819b4309d988c8a4ebfbcd302091c991 278 Pfam PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain 18 154 7.9E-14 T 13-10-2018 IPR024344 Mycothiol-dependent maleylpyruvate isomerase, metal-binding domain GO:0046872 RAM_14205 9fe30204d6e26ea850adf9ddfc995fac 114 Pfam PF12840 Helix-turn-helix domain 27 86 5.6E-10 T 13-10-2018 RAM_14205 9fe30204d6e26ea850adf9ddfc995fac 114 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 29 44 2.2E-6 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_14205 9fe30204d6e26ea850adf9ddfc995fac 114 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 62 77 2.2E-6 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_14205 9fe30204d6e26ea850adf9ddfc995fac 114 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 77 92 2.2E-6 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_14205 9fe30204d6e26ea850adf9ddfc995fac 114 SMART SM00418 27 106 7.4E-11 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_14205 9fe30204d6e26ea850adf9ddfc995fac 114 Gene3D G3DSA:1.10.10.10 9 111 1.9E-14 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_14205 9fe30204d6e26ea850adf9ddfc995fac 114 SUPERFAMILY SSF46785 19 107 5.25E-14 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_39895 ebe21f116803e707887e2c8861c4cdc0 396 Pfam PF12697 Alpha/beta hydrolase family 142 359 8.7E-9 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_39895 ebe21f116803e707887e2c8861c4cdc0 396 Gene3D G3DSA:3.40.50.1820 119 396 2.2E-71 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_39895 ebe21f116803e707887e2c8861c4cdc0 396 Gene3D G3DSA:1.20.1440.110 9 118 5.9E-30 T 13-10-2018 RAM_39895 ebe21f116803e707887e2c8861c4cdc0 396 SUPERFAMILY SSF53474 12 396 1.89E-54 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_41745 8d024bbe5d532d616ca0961bdf8b7bdd 382 SUPERFAMILY SSF51445 85 379 2.95E-65 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_41745 8d024bbe5d532d616ca0961bdf8b7bdd 382 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 65 377 2.0E-77 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_41745 8d024bbe5d532d616ca0961bdf8b7bdd 382 Gene3D G3DSA:3.20.20.300 60 381 4.3E-103 T 13-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 RAM_31790 b3cb433cf8376ca36933e699bc2b37e2 377 Gene3D G3DSA:3.30.565.10 248 372 1.7E-29 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_31790 b3cb433cf8376ca36933e699bc2b37e2 377 Pfam PF07730 Histidine kinase 176 241 1.2E-15 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_31790 b3cb433cf8376ca36933e699bc2b37e2 377 SUPERFAMILY SSF55874 277 372 9.04E-15 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_01670 25d548f786acaacf76fb43fecce1946e 169 Gene3D G3DSA:3.40.50.1240 1 167 1.4E-43 T 13-10-2018 IPR029033 Histidine phosphatase superfamily RAM_01670 25d548f786acaacf76fb43fecce1946e 169 SUPERFAMILY SSF53254 5 150 1.56E-22 T 13-10-2018 IPR029033 Histidine phosphatase superfamily RAM_01670 25d548f786acaacf76fb43fecce1946e 169 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 7 84 4.9E-9 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 RAM_21645 5bbc3e6d627560564c5d5daa52c06f35 328 Pfam PF00127 Copper binding proteins, plastocyanin/azurin family 95 173 3.1E-13 T 13-10-2018 IPR000923 Blue (type 1) copper domain GO:0005507|GO:0009055 RAM_21645 5bbc3e6d627560564c5d5daa52c06f35 328 SUPERFAMILY SSF49503 80 173 2.1E-26 T 13-10-2018 IPR008972 Cupredoxin RAM_21645 5bbc3e6d627560564c5d5daa52c06f35 328 PRINTS PR00155 Amicyanin family signature 142 157 1.5E-7 T 13-10-2018 IPR002386 Amicyanin/Pseudoazurin GO:0005507|GO:0009055 RAM_21645 5bbc3e6d627560564c5d5daa52c06f35 328 PRINTS PR00155 Amicyanin family signature 158 173 1.5E-7 T 13-10-2018 IPR002386 Amicyanin/Pseudoazurin GO:0005507|GO:0009055 RAM_21645 5bbc3e6d627560564c5d5daa52c06f35 328 PRINTS PR00155 Amicyanin family signature 102 121 1.5E-7 T 13-10-2018 IPR002386 Amicyanin/Pseudoazurin GO:0005507|GO:0009055 RAM_21645 5bbc3e6d627560564c5d5daa52c06f35 328 Gene3D G3DSA:2.60.40.420 75 173 3.2E-31 T 13-10-2018 IPR008972 Cupredoxin RAM_17820 cb0d04d90e05df478667ecaaeb15ad90 337 Gene3D G3DSA:3.90.180.10 15 330 4.4E-95 T 13-10-2018 RAM_17820 cb0d04d90e05df478667ecaaeb15ad90 337 Pfam PF00107 Zinc-binding dehydrogenase 175 291 1.1E-18 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RAM_17820 cb0d04d90e05df478667ecaaeb15ad90 337 Gene3D G3DSA:3.40.50.720 148 284 4.4E-95 T 13-10-2018 RAM_17820 cb0d04d90e05df478667ecaaeb15ad90 337 SUPERFAMILY SSF51735 141 303 8.92E-35 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_17820 cb0d04d90e05df478667ecaaeb15ad90 337 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 133 3.9E-28 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_17820 cb0d04d90e05df478667ecaaeb15ad90 337 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 60 74 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 RAM_17820 cb0d04d90e05df478667ecaaeb15ad90 337 SMART SM00829 10 333 7.5E-7 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_17820 cb0d04d90e05df478667ecaaeb15ad90 337 SUPERFAMILY SSF50129 4 170 9.74E-47 T 13-10-2018 IPR011032 GroES-like superfamily RAM_33205 19269f7ee6e5d379a1e6cbaa82bb1d7f 892 Pfam PF00196 Bacterial regulatory proteins, luxR family 829 880 8.1E-16 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_33205 19269f7ee6e5d379a1e6cbaa82bb1d7f 892 SUPERFAMILY SSF52540 4 211 3.28E-11 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_33205 19269f7ee6e5d379a1e6cbaa82bb1d7f 892 SUPERFAMILY SSF46894 819 881 5.1E-17 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_33205 19269f7ee6e5d379a1e6cbaa82bb1d7f 892 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 860 872 1.5E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_33205 19269f7ee6e5d379a1e6cbaa82bb1d7f 892 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 830 844 1.5E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_33205 19269f7ee6e5d379a1e6cbaa82bb1d7f 892 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 844 860 1.5E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_33205 19269f7ee6e5d379a1e6cbaa82bb1d7f 892 Pfam PF13191 AAA ATPase domain 7 150 1.0E-14 T 13-10-2018 RAM_33205 19269f7ee6e5d379a1e6cbaa82bb1d7f 892 Gene3D G3DSA:1.10.10.10 806 884 7.1E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_33205 19269f7ee6e5d379a1e6cbaa82bb1d7f 892 SMART SM00421 827 884 2.5E-20 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_41180 38c7ce393cd7d05748ec8ac78cd7c8f0 451 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 8 133 2.5E-31 T 13-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAM_41180 38c7ce393cd7d05748ec8ac78cd7c8f0 451 SUPERFAMILY SSF53738 259 362 7.46E-31 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAM_41180 38c7ce393cd7d05748ec8ac78cd7c8f0 451 Gene3D G3DSA:3.40.120.10 5 145 1.6E-43 T 13-10-2018 RAM_41180 38c7ce393cd7d05748ec8ac78cd7c8f0 451 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 155 253 2.6E-24 T 13-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAM_41180 38c7ce393cd7d05748ec8ac78cd7c8f0 451 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 372 450 1.7E-13 T 13-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAM_41180 38c7ce393cd7d05748ec8ac78cd7c8f0 451 SUPERFAMILY SSF53738 7 123 5.49E-31 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAM_41180 38c7ce393cd7d05748ec8ac78cd7c8f0 451 Gene3D G3DSA:3.30.310.50 368 451 2.9E-21 T 13-10-2018 RAM_41180 38c7ce393cd7d05748ec8ac78cd7c8f0 451 Gene3D G3DSA:3.40.120.10 172 249 6.6E-32 T 13-10-2018 RAM_41180 38c7ce393cd7d05748ec8ac78cd7c8f0 451 SUPERFAMILY SSF55957 367 451 1.7E-18 T 13-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAM_41180 38c7ce393cd7d05748ec8ac78cd7c8f0 451 SUPERFAMILY SSF53738 154 255 4.32E-29 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAM_41180 38c7ce393cd7d05748ec8ac78cd7c8f0 451 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 261 367 1.3E-26 T 13-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAM_41180 38c7ce393cd7d05748ec8ac78cd7c8f0 451 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 204 217 1.1E-21 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAM_41180 38c7ce393cd7d05748ec8ac78cd7c8f0 451 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 233 248 1.1E-21 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAM_41180 38c7ce393cd7d05748ec8ac78cd7c8f0 451 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 93 107 1.1E-21 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAM_41180 38c7ce393cd7d05748ec8ac78cd7c8f0 451 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 170 189 1.1E-21 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAM_41180 38c7ce393cd7d05748ec8ac78cd7c8f0 451 Gene3D G3DSA:3.40.120.10 250 366 7.7E-36 T 13-10-2018 RAM_40200 a5ee4f7ca62cb339b63277f455ea030f 516 SUPERFAMILY SSF51126 38 401 1.11E-64 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor RAM_40200 a5ee4f7ca62cb339b63277f455ea030f 516 Pfam PF00295 Glycosyl hydrolases family 28 134 358 2.0E-9 T 13-10-2018 IPR000743 Glycoside hydrolase, family 28 GO:0004650|GO:0005975 RAM_40200 a5ee4f7ca62cb339b63277f455ea030f 516 Gene3D G3DSA:2.160.20.10 24 415 4.2E-84 T 13-10-2018 IPR012334 Pectin lyase fold RAM_40200 a5ee4f7ca62cb339b63277f455ea030f 516 Pfam PF12708 Pectate lyase superfamily protein 40 106 2.6E-12 T 13-10-2018 IPR024535 Pectate lyase superfamily protein RAM_40200 a5ee4f7ca62cb339b63277f455ea030f 516 SMART SM00710 256 277 840.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_40200 a5ee4f7ca62cb339b63277f455ea030f 516 SMART SM00710 224 246 24.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_40200 a5ee4f7ca62cb339b63277f455ea030f 516 SMART SM00710 202 223 890.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_40200 a5ee4f7ca62cb339b63277f455ea030f 516 SMART SM00710 326 347 5200.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_40200 a5ee4f7ca62cb339b63277f455ea030f 516 SMART SM00710 386 411 9600.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_40200 a5ee4f7ca62cb339b63277f455ea030f 516 SMART SM00710 179 201 610.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_40200 a5ee4f7ca62cb339b63277f455ea030f 516 SMART SM00710 300 320 8600.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_03530 92da0101386421ea361620067cad5c83 132 Gene3D G3DSA:3.30.1490.10 78 132 2.8E-23 T 13-10-2018 RAM_03530 92da0101386421ea361620067cad5c83 132 Gene3D G3DSA:3.30.1370.30 4 77 6.5E-28 T 13-10-2018 RAM_03530 92da0101386421ea361620067cad5c83 132 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 132 30.984 T 13-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_03530 92da0101386421ea361620067cad5c83 132 SUPERFAMILY SSF56047 3 132 4.06E-43 T 13-10-2018 IPR035987 Ribosomal protein S8 superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_03530 92da0101386421ea361620067cad5c83 132 Pfam PF00410 Ribosomal protein S8 5 132 4.5E-49 T 13-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_24770 fb4fa136e7fa43094e8a14a9e55b94d3 111 Gene3D G3DSA:3.40.250.10 2 110 1.1E-21 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily RAM_24770 fb4fa136e7fa43094e8a14a9e55b94d3 111 Pfam PF00581 Rhodanese-like domain 9 100 2.7E-11 T 13-10-2018 IPR001763 Rhodanese-like domain RAM_24770 fb4fa136e7fa43094e8a14a9e55b94d3 111 SUPERFAMILY SSF52821 3 109 7.73E-24 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily RAM_24770 fb4fa136e7fa43094e8a14a9e55b94d3 111 ProSitePatterns PS00380 Rhodanese signature 1. 30 41 - T 13-10-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927|Reactome: R-HSA-1614558 RAM_24770 fb4fa136e7fa43094e8a14a9e55b94d3 111 SMART SM00450 5 104 2.3E-7 T 13-10-2018 IPR001763 Rhodanese-like domain RAM_34875 53b56195407200eea412861c87cf5735 303 Gene3D G3DSA:3.40.190.10 104 275 2.6E-29 T 13-10-2018 RAM_34875 53b56195407200eea412861c87cf5735 303 Gene3D G3DSA:3.40.190.10 161 255 2.6E-29 T 13-10-2018 RAM_34875 53b56195407200eea412861c87cf5735 303 SUPERFAMILY SSF53850 103 282 3.69E-27 T 13-10-2018 RAM_34875 53b56195407200eea412861c87cf5735 303 SUPERFAMILY SSF46785 3 85 2.03E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_34875 53b56195407200eea412861c87cf5735 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 6.5E-11 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_34875 53b56195407200eea412861c87cf5735 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 6.5E-11 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_34875 53b56195407200eea412861c87cf5735 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 6.5E-11 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_34875 53b56195407200eea412861c87cf5735 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 2.3E-22 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_34875 53b56195407200eea412861c87cf5735 303 Pfam PF03466 LysR substrate binding domain 102 279 8.8E-29 T 13-10-2018 IPR005119 LysR, substrate-binding RAM_34875 53b56195407200eea412861c87cf5735 303 Gene3D G3DSA:1.10.10.10 1 87 2.2E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_26325 c37991e6b25d51df79a5e8dd1c8274b8 109 Gene3D G3DSA:3.30.70.120 1 106 4.5E-36 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal RAM_26325 c37991e6b25d51df79a5e8dd1c8274b8 109 Pfam PF03091 CutA1 divalent ion tolerance protein 7 102 2.2E-33 T 13-10-2018 IPR004323 Divalent ion tolerance protein, CutA GO:0010038 RAM_26325 c37991e6b25d51df79a5e8dd1c8274b8 109 SUPERFAMILY SSF54913 3 106 2.3E-34 T 13-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta RAM_19645 514ed98c25acd8805a6162f9edf517c2 140 Gene3D G3DSA:3.10.129.10 5 121 1.6E-26 T 13-10-2018 RAM_19645 514ed98c25acd8805a6162f9edf517c2 140 SUPERFAMILY SSF54637 15 118 2.08E-25 T 13-10-2018 IPR029069 HotDog domain superfamily RAM_19645 514ed98c25acd8805a6162f9edf517c2 140 Pfam PF03061 Thioesterase superfamily 36 104 3.1E-10 T 13-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 RAM_29975 4c957be2215fc47d92b752b4ce1ec9d6 244 Gene3D G3DSA:3.20.20.150 3 241 1.3E-55 T 13-10-2018 RAM_29975 4c957be2215fc47d92b752b4ce1ec9d6 244 Pfam PF01261 Xylose isomerase-like TIM barrel 72 201 1.8E-17 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain RAM_29975 4c957be2215fc47d92b752b4ce1ec9d6 244 SUPERFAMILY SSF51658 8 239 1.08E-32 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily RAM_08250 7687f2d55a5a581a63b28f67040c8855 142 SUPERFAMILY SSF46785 8 141 5.04E-28 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_08250 7687f2d55a5a581a63b28f67040c8855 142 Pfam PF12802 MarR family 34 90 1.3E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_08250 7687f2d55a5a581a63b28f67040c8855 142 Gene3D G3DSA:1.10.10.10 2 142 5.0E-32 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_08250 7687f2d55a5a581a63b28f67040c8855 142 SMART SM00347 27 127 4.6E-13 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_09740 887e29dd2a2bf6428392123d96cc3683 155 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 5 55 9.6E-8 T 13-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RAM_09740 887e29dd2a2bf6428392123d96cc3683 155 SUPERFAMILY SSF47741 85 151 1.31E-32 T 13-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily RAM_09740 887e29dd2a2bf6428392123d96cc3683 155 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 40 48 - T 13-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RAM_09740 887e29dd2a2bf6428392123d96cc3683 155 SUPERFAMILY SSF54292 2 79 2.49E-20 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RAM_09740 887e29dd2a2bf6428392123d96cc3683 155 Pfam PF01799 [2Fe-2S] binding domain 74 146 1.0E-30 T 13-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RAM_09740 887e29dd2a2bf6428392123d96cc3683 155 Gene3D G3DSA:3.30.365.10 1 155 2.5E-60 T 13-10-2018 RAM_09045 079c604d0508fd22b958257e3558d4ff 324 Pfam PF00296 Luciferase-like monooxygenase 16 299 3.1E-39 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_09045 079c604d0508fd22b958257e3558d4ff 324 Gene3D G3DSA:3.20.20.30 1 323 2.5E-105 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_09045 079c604d0508fd22b958257e3558d4ff 324 SUPERFAMILY SSF51679 2 321 1.44E-82 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_09045 079c604d0508fd22b958257e3558d4ff 324 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 3 321 2.0E-132 T 13-10-2018 IPR019949 Luciferase family oxidoreductase, group 1 RAM_03350 70599f13e3a511678b9b1443c15d9d55 1167 Gene3D G3DSA:2.40.270.10 35 1028 0.0 T 13-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAM_03350 70599f13e3a511678b9b1443c15d9d55 1167 Gene3D G3DSA:3.90.1100.10 37 634 0.0 T 13-10-2018 RAM_03350 70599f13e3a511678b9b1443c15d9d55 1167 Gene3D G3DSA:3.90.1110.10 179 364 0.0 T 13-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAM_03350 70599f13e3a511678b9b1443c15d9d55 1167 Pfam PF04565 RNA polymerase Rpb2, domain 3 429 497 5.8E-28 T 13-10-2018 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAM_03350 70599f13e3a511678b9b1443c15d9d55 1167 Pfam PF00562 RNA polymerase Rpb2, domain 6 634 1050 2.3E-159 T 13-10-2018 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAM_03350 70599f13e3a511678b9b1443c15d9d55 1167 Pfam PF04563 RNA polymerase beta subunit 46 415 2.0E-22 T 13-10-2018 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAM_03350 70599f13e3a511678b9b1443c15d9d55 1167 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 248 847 1.1E-304 T 13-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAM_03350 70599f13e3a511678b9b1443c15d9d55 1167 Pfam PF04560 RNA polymerase Rpb2, domain 7 1052 1126 6.9E-27 T 13-10-2018 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAM_03350 70599f13e3a511678b9b1443c15d9d55 1167 SUPERFAMILY SSF64484 31 1139 0.0 T 13-10-2018 RAM_03350 70599f13e3a511678b9b1443c15d9d55 1167 Pfam PF04561 RNA polymerase Rpb2, domain 2 174 370 1.5E-30 T 13-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAM_03350 70599f13e3a511678b9b1443c15d9d55 1167 ProSitePatterns PS01166 RNA polymerases beta chain signature. 873 885 - T 13-10-2018 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAM_03350 70599f13e3a511678b9b1443c15d9d55 1167 Gene3D G3DSA:2.30.150.10 510 577 0.0 T 13-10-2018 RAM_03350 70599f13e3a511678b9b1443c15d9d55 1167 Gene3D G3DSA:3.90.1800.10 1037 1091 1.5E-10 T 13-10-2018 RAM_03350 70599f13e3a511678b9b1443c15d9d55 1167 Gene3D G3DSA:2.40.50.150 745 871 0.0 T 13-10-2018 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAM_03350 70599f13e3a511678b9b1443c15d9d55 1167 Pfam PF10385 RNA polymerase beta subunit external 1 domain 507 573 2.5E-25 T 13-10-2018 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAM_03350 70599f13e3a511678b9b1443c15d9d55 1167 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 32 1128 12.272 T 13-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAM_03350 70599f13e3a511678b9b1443c15d9d55 1167 Gene3D G3DSA:2.40.50.100 635 709 0.0 T 13-10-2018 RAM_08610 a2bd4b0dee8079c1b2a7c268445275b8 1125 SUPERFAMILY SSF52743 173 676 4.32E-58 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RAM_08610 a2bd4b0dee8079c1b2a7c268445275b8 1125 PRINTS PR00723 Subtilisin serine protease family (S8) signature 611 627 1.7E-17 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related RAM_08610 a2bd4b0dee8079c1b2a7c268445275b8 1125 PRINTS PR00723 Subtilisin serine protease family (S8) signature 262 275 1.7E-17 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related RAM_08610 a2bd4b0dee8079c1b2a7c268445275b8 1125 PRINTS PR00723 Subtilisin serine protease family (S8) signature 188 207 1.7E-17 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related RAM_08610 a2bd4b0dee8079c1b2a7c268445275b8 1125 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 266 276 - T 13-10-2018 IPR022398 Peptidase S8, subtilisin, His-active site RAM_08610 a2bd4b0dee8079c1b2a7c268445275b8 1125 Gene3D G3DSA:3.40.50.200 482 679 3.6E-26 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RAM_08610 a2bd4b0dee8079c1b2a7c268445275b8 1125 Pfam PF00082 Subtilase family 188 649 8.7E-36 T 13-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RAM_08610 a2bd4b0dee8079c1b2a7c268445275b8 1125 Gene3D G3DSA:3.40.50.200 164 469 1.4E-38 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RAM_08610 a2bd4b0dee8079c1b2a7c268445275b8 1125 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 612 622 - T 13-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site RAM_08610 a2bd4b0dee8079c1b2a7c268445275b8 1125 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 193 204 - T 13-10-2018 IPR023827 Peptidase S8, subtilisin, Asp-active site RAM_00910 c047c0fd053a84034b4b9517361ef091 310 TIGRFAM TIGR00554 panK_bact: pantothenate kinase 9 309 1.1E-121 T 13-10-2018 IPR004566 Pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 RAM_00910 c047c0fd053a84034b4b9517361ef091 310 PIRSF PIRSF000545 1 310 2.1E-140 T 13-10-2018 IPR004566 Pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 RAM_00910 c047c0fd053a84034b4b9517361ef091 310 Gene3D G3DSA:3.40.50.300 1 310 8.1E-95 T 13-10-2018 RAM_00910 c047c0fd053a84034b4b9517361ef091 310 SUPERFAMILY SSF52540 6 309 4.75E-70 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_00910 c047c0fd053a84034b4b9517361ef091 310 Hamap MF_00215 Pantothenate kinase [coaA]. 1 310 174.473 T 13-10-2018 IPR004566 Pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 RAM_00910 c047c0fd053a84034b4b9517361ef091 310 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 90 227 3.0E-12 T 13-10-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0016301 Reactome: R-HSA-73614 RAM_39140 8ed0be93fd44321569c60173af75720a 396 Pfam PF02470 MlaD protein 37 111 2.1E-10 T 13-10-2018 IPR003399 Mce/MlaD RAM_39140 8ed0be93fd44321569c60173af75720a 396 Pfam PF11887 Cholesterol uptake porter CUP1 of Mce4, putative 143 375 3.7E-71 T 13-10-2018 IPR024516 Mammalian cell entry, C-terminal RAM_39140 8ed0be93fd44321569c60173af75720a 396 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 16 289 6.1E-56 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_35805 9fd288623736e64e3bd652d9d96e72e3 983 Gene3D G3DSA:1.25.40.10 552 873 3.5E-27 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_35805 9fd288623736e64e3bd652d9d96e72e3 983 Pfam PF00196 Bacterial regulatory proteins, luxR family 923 978 5.8E-15 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_35805 9fd288623736e64e3bd652d9d96e72e3 983 SUPERFAMILY SSF52540 125 380 5.34E-21 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_35805 9fd288623736e64e3bd652d9d96e72e3 983 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 954 966 2.1E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_35805 9fd288623736e64e3bd652d9d96e72e3 983 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 938 954 2.1E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_35805 9fd288623736e64e3bd652d9d96e72e3 983 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 924 938 2.1E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_35805 9fd288623736e64e3bd652d9d96e72e3 983 SUPERFAMILY SSF48452 612 795 9.36E-11 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_35805 9fd288623736e64e3bd652d9d96e72e3 983 SMART SM00421 921 978 1.6E-23 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_35805 9fd288623736e64e3bd652d9d96e72e3 983 SUPERFAMILY SSF46894 915 979 6.46E-18 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_35805 9fd288623736e64e3bd652d9d96e72e3 983 Gene3D G3DSA:3.40.50.300 122 263 4.9E-17 T 13-10-2018 RAM_35805 9fd288623736e64e3bd652d9d96e72e3 983 Gene3D G3DSA:3.30.70.1230 28 116 1.1E-8 T 13-10-2018 IPR029787 Nucleotide cyclase RAM_35805 9fd288623736e64e3bd652d9d96e72e3 983 PRINTS PR00364 Disease resistance protein signature 154 169 4.8E-5 T 13-10-2018 RAM_35805 9fd288623736e64e3bd652d9d96e72e3 983 PRINTS PR00364 Disease resistance protein signature 312 326 4.8E-5 T 13-10-2018 RAM_35805 9fd288623736e64e3bd652d9d96e72e3 983 PRINTS PR00364 Disease resistance protein signature 218 232 4.8E-5 T 13-10-2018 RAM_35805 9fd288623736e64e3bd652d9d96e72e3 983 ProSitePatterns PS00622 LuxR-type HTH domain signature. 938 965 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_35805 9fd288623736e64e3bd652d9d96e72e3 983 Gene3D G3DSA:1.10.10.10 902 981 3.5E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_35805 9fd288623736e64e3bd652d9d96e72e3 983 SUPERFAMILY SSF55073 18 119 3.3E-10 T 13-10-2018 IPR029787 Nucleotide cyclase RAM_07415 ad931019fef7c73ae68a0a627fb58a7b 292 PIRSF PIRSF006157 39 292 1.3E-72 T 13-10-2018 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA-type GO:0008270|GO:0016701|GO:0055114 RAM_07415 ad931019fef7c73ae68a0a627fb58a7b 292 SUPERFAMILY SSF53213 43 281 3.01E-71 T 13-10-2018 RAM_07415 ad931019fef7c73ae68a0a627fb58a7b 292 Gene3D G3DSA:3.40.830.10 33 291 2.4E-71 T 13-10-2018 RAM_07415 ad931019fef7c73ae68a0a627fb58a7b 292 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 71 269 8.2E-38 T 13-10-2018 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 RAM_47940 7db1be6140dcd9e831acf6cd99edbd5d 628 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 103 615 1.6E-79 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ RAM_47940 7db1be6140dcd9e831acf6cd99edbd5d 628 PRINTS PR01806 Virulence factor MviN signature 134 153 7.1E-22 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ RAM_47940 7db1be6140dcd9e831acf6cd99edbd5d 628 PRINTS PR01806 Virulence factor MviN signature 230 254 7.1E-22 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ RAM_47940 7db1be6140dcd9e831acf6cd99edbd5d 628 PRINTS PR01806 Virulence factor MviN signature 254 275 7.1E-22 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ RAM_47940 7db1be6140dcd9e831acf6cd99edbd5d 628 PRINTS PR01806 Virulence factor MviN signature 366 392 7.1E-22 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ RAM_47940 7db1be6140dcd9e831acf6cd99edbd5d 628 PRINTS PR01806 Virulence factor MviN signature 464 483 7.1E-22 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ RAM_47940 7db1be6140dcd9e831acf6cd99edbd5d 628 PRINTS PR01806 Virulence factor MviN signature 153 169 7.1E-22 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ RAM_47940 7db1be6140dcd9e831acf6cd99edbd5d 628 Pfam PF03023 MviN-like protein 132 573 3.0E-86 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ RAM_04680 7a48d432d7829d69f78aced8723c671d 277 SUPERFAMILY SSF52980 169 260 1.82E-6 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 RAM_04680 7a48d432d7829d69f78aced8723c671d 277 Gene3D G3DSA:3.40.960.10 173 274 5.6E-11 T 13-10-2018 RAM_26515 fa99f4464fe7fc288ec45177327aa6b8 310 PIRSF PIRSF006493 1 306 1.7E-93 T 13-10-2018 IPR009187 Non-homologous end joining protein Ku, prokaryotic type RAM_26515 fa99f4464fe7fc288ec45177327aa6b8 310 TIGRFAM TIGR02772 Ku_bact: Ku protein 2 259 8.5E-85 T 13-10-2018 IPR009187 Non-homologous end joining protein Ku, prokaryotic type RAM_26515 fa99f4464fe7fc288ec45177327aa6b8 310 Hamap MF_01875 Non-homologous end joining protein Ku [ku]. 2 256 31.893 T 13-10-2018 IPR009187 Non-homologous end joining protein Ku, prokaryotic type RAM_26515 fa99f4464fe7fc288ec45177327aa6b8 310 Gene3D G3DSA:2.40.290.10 4 175 9.7E-18 T 13-10-2018 IPR016194 SPOC-like, C-terminal domain superfamily RAM_26515 fa99f4464fe7fc288ec45177327aa6b8 310 SMART SM00559 53 182 3.3E-29 T 13-10-2018 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: R-HSA-164843|Reactome: R-HSA-1834949|Reactome: R-HSA-3270619|Reactome: R-HSA-5693571|Reactome: R-HSA-6798695 RAM_26515 fa99f4464fe7fc288ec45177327aa6b8 310 Pfam PF02735 Ku70/Ku80 beta-barrel domain 13 193 1.2E-33 T 13-10-2018 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: R-HSA-164843|Reactome: R-HSA-1834949|Reactome: R-HSA-3270619|Reactome: R-HSA-5693571|Reactome: R-HSA-6798695 RAM_26515 fa99f4464fe7fc288ec45177327aa6b8 310 SUPERFAMILY SSF100939 2 257 8.44E-48 T 13-10-2018 IPR016194 SPOC-like, C-terminal domain superfamily RAM_25055 98395afc6168970489df9e58a6434842 181 Gene3D G3DSA:1.10.3300.10 4 179 2.6E-17 T 13-10-2018 IPR023286 ABATE domain superfamily RAM_25055 98395afc6168970489df9e58a6434842 181 SUPERFAMILY SSF160904 4 176 2.62E-30 T 13-10-2018 RAM_25055 98395afc6168970489df9e58a6434842 181 Pfam PF11706 CGNR zinc finger 137 177 3.9E-10 T 13-10-2018 IPR021005 Zinc finger, CGNR RAM_25055 98395afc6168970489df9e58a6434842 181 Pfam PF07336 Putative stress-induced transcription regulator 10 132 2.7E-14 T 13-10-2018 IPR010852 Putative stress-induced transcription regulator RAM_26020 bf322e908cfde2d17c5a6684ec7dd49e 1215 SUPERFAMILY SSF48208 774 1183 4.0E-42 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_26020 bf322e908cfde2d17c5a6684ec7dd49e 1215 Gene3D G3DSA:2.60.40.10 200 304 1.2E-31 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_26020 bf322e908cfde2d17c5a6684ec7dd49e 1215 Gene3D G3DSA:2.60.120.260 33 191 3.4E-39 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_26020 bf322e908cfde2d17c5a6684ec7dd49e 1215 Gene3D G3DSA:2.60.120.260 323 483 0.0 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_26020 bf322e908cfde2d17c5a6684ec7dd49e 1215 SUPERFAMILY SSF49785 40 131 1.08E-11 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_26020 bf322e908cfde2d17c5a6684ec7dd49e 1215 PIRSF PIRSF010631 437 1208 3.2E-243 T 13-10-2018 IPR016007 Alpha-L-rhamnosidase RAM_26020 bf322e908cfde2d17c5a6684ec7dd49e 1215 PIRSF PIRSF010631 39 94 230.0 T 13-10-2018 IPR016007 Alpha-L-rhamnosidase RAM_26020 bf322e908cfde2d17c5a6684ec7dd49e 1215 PIRSF PIRSF010631 156 178 360.0 T 13-10-2018 IPR016007 Alpha-L-rhamnosidase RAM_26020 bf322e908cfde2d17c5a6684ec7dd49e 1215 PIRSF PIRSF010631 185 420 2.6E-35 T 13-10-2018 IPR016007 Alpha-L-rhamnosidase RAM_26020 bf322e908cfde2d17c5a6684ec7dd49e 1215 Pfam PF05592 Bacterial alpha-L-rhamnosidase concanavalin-like domain 677 776 2.7E-31 T 13-10-2018 IPR008902 Alpha-L-rhamnosidase, concanavalin-like domain RAM_26020 bf322e908cfde2d17c5a6684ec7dd49e 1215 Pfam PF13364 Beta-galactosidase jelly roll domain 47 127 5.2E-5 T 13-10-2018 IPR025300 Beta-galactosidase jelly roll domain KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024096|Reactome: R-HSA-2206308|Reactome: R-HSA-4085001|Reactome: R-HSA-6798695 RAM_26020 bf322e908cfde2d17c5a6684ec7dd49e 1215 Gene3D G3DSA:1.50.10.10 311 1211 0.0 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 RAM_26020 bf322e908cfde2d17c5a6684ec7dd49e 1215 Pfam PF08531 Alpha-L-rhamnosidase N-terminal domain 498 666 4.6E-54 T 13-10-2018 IPR013737 Bacterial alpha-L-rhamnosidase N-terminal RAM_26020 bf322e908cfde2d17c5a6684ec7dd49e 1215 Pfam PF17390 Bacterial alpha-L-rhamnosidase C-terminal domain 1118 1187 2.0E-19 T 13-10-2018 IPR035398 Alpha-L-rhamnosidase C-terminal domain RAM_26020 bf322e908cfde2d17c5a6684ec7dd49e 1215 Pfam PF17389 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain 782 1116 2.3E-110 T 13-10-2018 IPR035396 Alpha-L-rhamnosidase, six-hairpin glycosidase domain RAM_26020 bf322e908cfde2d17c5a6684ec7dd49e 1215 SUPERFAMILY SSF49785 336 419 4.54E-8 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_45660 d995e8a8db648a5d6d25b20c48c089b4 309 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 22 65 9.3E-10 T 13-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain RAM_45660 d995e8a8db648a5d6d25b20c48c089b4 309 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 122 308 3.7E-29 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_45660 d995e8a8db648a5d6d25b20c48c089b4 309 SUPERFAMILY SSF161098 99 289 4.97E-29 T 13-10-2018 IPR035906 MetI-like superfamily RAM_45660 d995e8a8db648a5d6d25b20c48c089b4 309 Gene3D G3DSA:1.10.3720.10 95 304 1.5E-24 T 13-10-2018 IPR035906 MetI-like superfamily RAM_08715 7ed516275639d8535cee81134c7eb822 1151 Gene3D G3DSA:3.40.50.300 2 267 2.2E-35 T 13-10-2018 RAM_08715 7ed516275639d8535cee81134c7eb822 1151 Gene3D G3DSA:3.40.50.300 908 1148 7.7E-22 T 13-10-2018 RAM_08715 7ed516275639d8535cee81134c7eb822 1151 Pfam PF13476 AAA domain 3 189 5.6E-17 T 13-10-2018 IPR038729 Rad50/SbcC-type AAA domain RAM_08715 7ed516275639d8535cee81134c7eb822 1151 Pfam PF13558 Putative exonuclease SbcCD, C subunit 1039 1108 1.0E-13 T 13-10-2018 RAM_08715 7ed516275639d8535cee81134c7eb822 1151 SUPERFAMILY SSF52540 3 1146 4.88E-37 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_16560 209952760da303dda4a56587991e757f 670 SUPERFAMILY SSF50249 222 341 2.46E-27 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_16560 209952760da303dda4a56587991e757f 670 Pfam PF01068 ATP dependent DNA ligase domain 28 217 1.4E-27 T 13-10-2018 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 RAM_16560 209952760da303dda4a56587991e757f 670 TIGRFAM TIGR02779 NHEJ_ligase_lig: DNA ligase D, ligase domain 26 340 1.5E-69 T 13-10-2018 IPR014146 DNA ligase D, ligase domain RAM_16560 209952760da303dda4a56587991e757f 670 SUPERFAMILY SSF56091 10 217 1.56E-40 T 13-10-2018 RAM_16560 209952760da303dda4a56587991e757f 670 Gene3D G3DSA:3.30.470.30 12 217 1.4E-40 T 13-10-2018 RAM_16560 209952760da303dda4a56587991e757f 670 Gene3D G3DSA:2.40.50.140 221 342 1.5E-35 T 13-10-2018 RAM_16560 209952760da303dda4a56587991e757f 670 TIGRFAM TIGR02778 ligD_pol: DNA ligase D, polymerase domain 389 633 5.9E-82 T 13-10-2018 IPR014145 DNA ligase D, polymerase domain RAM_16560 209952760da303dda4a56587991e757f 670 TIGRFAM TIGR02776 NHEJ_ligase_prk: DNA ligase D 27 657 3.4E-140 T 13-10-2018 IPR014143 DNA ligase D RAM_16560 209952760da303dda4a56587991e757f 670 Pfam PF04679 ATP dependent DNA ligase C terminal region 240 335 2.4E-24 T 13-10-2018 IPR012309 DNA ligase, ATP-dependent, C-terminal GO:0003910|GO:0006281|GO:0006310 RAM_16560 209952760da303dda4a56587991e757f 670 Gene3D G3DSA:3.90.920.30 395 670 5.1E-100 T 13-10-2018 RAM_39395 b0572fce5ed6e2b5ba393a4eb04e0b77 256 Gene3D G3DSA:1.10.10.60 12 91 6.9E-26 T 13-10-2018 RAM_39395 b0572fce5ed6e2b5ba393a4eb04e0b77 256 Gene3D G3DSA:1.10.357.10 97 256 3.2E-36 T 13-10-2018 RAM_39395 b0572fce5ed6e2b5ba393a4eb04e0b77 256 Pfam PF02909 Tetracyclin repressor, C-terminal all-alpha domain 103 254 7.4E-20 T 13-10-2018 IPR004111 Tetracycline transcriptional regulator, TetR, C-terminal GO:0045892 RAM_39395 b0572fce5ed6e2b5ba393a4eb04e0b77 256 Pfam PF00440 Bacterial regulatory proteins, tetR family 41 85 1.1E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_39395 b0572fce5ed6e2b5ba393a4eb04e0b77 256 SUPERFAMILY SSF48498 106 255 4.78E-23 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_39395 b0572fce5ed6e2b5ba393a4eb04e0b77 256 SUPERFAMILY SSF46689 29 91 4.09E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_36730 85e7a93162c57b51bab767acbe70a349 349 Pfam PF00296 Luciferase-like monooxygenase 22 307 9.1E-43 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_36730 85e7a93162c57b51bab767acbe70a349 349 SUPERFAMILY SSF51679 23 339 6.93E-68 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_36730 85e7a93162c57b51bab767acbe70a349 349 Gene3D G3DSA:3.20.20.30 2 347 1.8E-71 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_05230 23be4467f809de34d62f40c04b669e1a 205 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 1.2E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_05230 23be4467f809de34d62f40c04b669e1a 205 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 1.2E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_05230 23be4467f809de34d62f40c04b669e1a 205 SUPERFAMILY SSF46689 4 69 2.62E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_05230 23be4467f809de34d62f40c04b669e1a 205 Gene3D G3DSA:1.10.357.10 59 204 1.6E-14 T 13-10-2018 RAM_05230 23be4467f809de34d62f40c04b669e1a 205 SUPERFAMILY SSF48498 84 200 1.45E-9 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_05230 23be4467f809de34d62f40c04b669e1a 205 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 63 1.1E-13 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_05230 23be4467f809de34d62f40c04b669e1a 205 Gene3D G3DSA:1.10.10.60 1 58 1.6E-14 T 13-10-2018 RAM_30210 47e5602cd97e782b2450479092013201 527 SMART SM00065 135 291 1.1E-6 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_30210 47e5602cd97e782b2450479092013201 527 SUPERFAMILY SSF81606 324 521 1.57E-11 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_30210 47e5602cd97e782b2450479092013201 527 SMART SM00331 311 521 5.4E-38 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_30210 47e5602cd97e782b2450479092013201 527 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 338 521 3.5E-41 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_30210 47e5602cd97e782b2450479092013201 527 Gene3D G3DSA:3.30.450.40 131 291 2.2E-30 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_30210 47e5602cd97e782b2450479092013201 527 Gene3D G3DSA:3.60.40.10 304 521 3.0E-55 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_30210 47e5602cd97e782b2450479092013201 527 SUPERFAMILY SSF55781 118 298 1.35E-19 T 13-10-2018 RAM_30210 47e5602cd97e782b2450479092013201 527 Pfam PF13185 GAF domain 134 282 3.8E-8 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_09470 41b2fe1e7edccc32f14edaa5a98d40fd 289 SUPERFAMILY SSF52540 31 264 1.98E-35 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_09470 41b2fe1e7edccc32f14edaa5a98d40fd 289 SMART SM00382 33 216 2.2E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_09470 41b2fe1e7edccc32f14edaa5a98d40fd 289 Pfam PF07728 AAA domain (dynein-related subfamily) 38 190 2.1E-15 T 13-10-2018 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 RAM_09470 41b2fe1e7edccc32f14edaa5a98d40fd 289 Gene3D G3DSA:3.40.50.300 23 208 1.3E-29 T 13-10-2018 RAM_47615 02eb20a7b8878f9be01c8e33794d9610 181 Gene3D G3DSA:1.10.10.10 1 95 1.0E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_47615 02eb20a7b8878f9be01c8e33794d9610 181 Pfam PF03551 Transcriptional regulator PadR-like family 6 83 5.2E-17 T 13-10-2018 IPR005149 Transcription regulator PadR, N-terminal RAM_47615 02eb20a7b8878f9be01c8e33794d9610 181 SUPERFAMILY SSF46785 2 172 1.17E-31 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_47275 b77755bb54e5417af70e382979d33fb0 421 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 21 50 - T 13-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 RAM_47275 b77755bb54e5417af70e382979d33fb0 421 Gene3D G3DSA:2.40.50.100 1 72 7.5E-21 T 13-10-2018 RAM_47275 b77755bb54e5417af70e382979d33fb0 421 SUPERFAMILY SSF51230 3 89 5.23E-23 T 13-10-2018 IPR011053 Single hybrid motif RAM_47275 b77755bb54e5417af70e382979d33fb0 421 Gene3D G3DSA:3.30.559.10 177 419 9.5E-84 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_47275 b77755bb54e5417af70e382979d33fb0 421 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 191 419 8.5E-83 T 13-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 RAM_47275 b77755bb54e5417af70e382979d33fb0 421 SUPERFAMILY SSF47005 134 177 6.93E-9 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 RAM_47275 b77755bb54e5417af70e382979d33fb0 421 Pfam PF00364 Biotin-requiring enzyme 4 70 1.0E-17 T 13-10-2018 IPR000089 Biotin/lipoyl attachment RAM_47275 b77755bb54e5417af70e382979d33fb0 421 SUPERFAMILY SSF52777 182 418 9.78E-82 T 13-10-2018 RAM_47275 b77755bb54e5417af70e382979d33fb0 421 Pfam PF02817 e3 binding domain 138 173 7.2E-12 T 13-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 RAM_47275 b77755bb54e5417af70e382979d33fb0 421 Gene3D G3DSA:4.10.320.10 138 176 3.9E-13 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 RAM_42320 ac70e0f38ab21dc988efddd815acbc70 197 SUPERFAMILY SSF53178 12 195 7.46E-65 T 13-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 RAM_42320 ac70e0f38ab21dc988efddd815acbc70 197 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 24 37 - T 13-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 RAM_42320 ac70e0f38ab21dc988efddd815acbc70 197 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 11 188 33.408 T 13-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 RAM_42320 ac70e0f38ab21dc988efddd815acbc70 197 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 13 195 1.3E-55 T 13-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 RAM_42320 ac70e0f38ab21dc988efddd815acbc70 197 Gene3D G3DSA:3.40.50.1470 9 197 2.5E-68 T 13-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 RAM_42320 ac70e0f38ab21dc988efddd815acbc70 197 Pfam PF01195 Peptidyl-tRNA hydrolase 13 194 1.4E-54 T 13-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 RAM_42320 ac70e0f38ab21dc988efddd815acbc70 197 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 117 127 - T 13-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 RAM_43620 711d4c0ae92fabe1c8a57d6e2f9a2e27 539 SUPERFAMILY SSF52540 79 223 7.53E-6 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_43620 711d4c0ae92fabe1c8a57d6e2f9a2e27 539 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 280 408 2.1E-24 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RAM_43620 711d4c0ae92fabe1c8a57d6e2f9a2e27 539 SMART SM00382 276 411 1.4E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_43620 711d4c0ae92fabe1c8a57d6e2f9a2e27 539 Gene3D G3DSA:3.40.50.300 240 410 2.3E-32 T 13-10-2018 RAM_43620 711d4c0ae92fabe1c8a57d6e2f9a2e27 539 Gene3D G3DSA:1.10.8.60 411 489 6.0E-6 T 13-10-2018 RAM_43620 711d4c0ae92fabe1c8a57d6e2f9a2e27 539 SUPERFAMILY SSF52540 243 480 9.53E-42 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_33590 b2797fb86675838cea84d9553b44b96d 73 Pfam PF09954 Uncharacterized protein conserved in bacteria (DUF2188) 7 65 1.4E-11 T 13-10-2018 IPR018691 Protein of unknown function DUF2188 RAM_37845 aebfa35f1a71ce33ca7ed7d8d8f87de8 329 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 103 320 3.8E-14 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_37845 aebfa35f1a71ce33ca7ed7d8d8f87de8 329 SUPERFAMILY SSF161098 46 312 4.84E-32 T 13-10-2018 IPR035906 MetI-like superfamily RAM_37845 aebfa35f1a71ce33ca7ed7d8d8f87de8 329 Gene3D G3DSA:1.10.3720.10 80 324 5.9E-31 T 13-10-2018 IPR035906 MetI-like superfamily RAM_37845 aebfa35f1a71ce33ca7ed7d8d8f87de8 329 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 30 320 1.0E-73 T 13-10-2018 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 RAM_29930 eff9badbb239ec840c0ea7658635ba75 432 Pfam PF01425 Amidase 321 405 3.6E-7 T 13-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RAM_29930 eff9badbb239ec840c0ea7658635ba75 432 Pfam PF01425 Amidase 23 296 4.9E-73 T 13-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RAM_29930 eff9badbb239ec840c0ea7658635ba75 432 SUPERFAMILY SSF75304 5 412 9.03E-103 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RAM_29930 eff9badbb239ec840c0ea7658635ba75 432 Gene3D G3DSA:3.90.1300.10 2 416 3.2E-104 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RAM_02125 ef15eb9843fe65fd8d80fda86c7684b5 261 Pfam PF13672 Protein phosphatase 2C 31 221 1.4E-9 T 13-10-2018 RAM_02125 ef15eb9843fe65fd8d80fda86c7684b5 261 SUPERFAMILY SSF81606 19 253 6.02E-7 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_02125 ef15eb9843fe65fd8d80fda86c7684b5 261 Gene3D G3DSA:3.60.40.10 8 252 8.9E-8 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_41910 db88c1326cc3878ac936c054db9463b9 760 SMART SM00382 66 321 1.5E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_41910 db88c1326cc3878ac936c054db9463b9 760 SUPERFAMILY SSF52540 49 373 2.43E-15 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_10925 ef37004add3306e8a750eacc9fea478c 315 Gene3D G3DSA:3.40.50.720 23 314 1.3E-69 T 13-10-2018 RAM_10925 ef37004add3306e8a750eacc9fea478c 315 Pfam PF00106 short chain dehydrogenase 30 226 7.5E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_10925 ef37004add3306e8a750eacc9fea478c 315 SUPERFAMILY SSF51735 27 277 3.85E-48 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_10925 ef37004add3306e8a750eacc9fea478c 315 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 101 112 1.6E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_10925 ef37004add3306e8a750eacc9fea478c 315 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 203 220 1.6E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_10925 ef37004add3306e8a750eacc9fea478c 315 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 31 48 1.6E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_02400 00824fe874225b82b4f2f6d30e6e5726 33 Pfam PF08213 Mitochondrial domain of unknown function (DUF1713) 1 33 1.6E-11 T 13-10-2018 IPR013177 Domain of unknown function DUF1713 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_02400 00824fe874225b82b4f2f6d30e6e5726 33 SMART SM01155 1 33 1.6E-7 T 13-10-2018 IPR013177 Domain of unknown function DUF1713 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_46495 cca5b3ea90f6469043d4c3ab80ac61f0 260 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 28 243 1.7E-50 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RAM_46495 cca5b3ea90f6469043d4c3ab80ac61f0 260 SUPERFAMILY SSF53850 1 243 1.73E-56 T 13-10-2018 RAM_46495 cca5b3ea90f6469043d4c3ab80ac61f0 260 Gene3D G3DSA:3.40.190.10 28 242 1.4E-56 T 13-10-2018 RAM_46495 cca5b3ea90f6469043d4c3ab80ac61f0 260 Gene3D G3DSA:3.40.190.10 112 204 1.4E-56 T 13-10-2018 RAM_46495 cca5b3ea90f6469043d4c3ab80ac61f0 260 SMART SM00062 27 246 5.9E-46 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RAM_09930 b51ce4a3c5ae567119ccf30fd63eaefa 147 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 2 77 21.792 T 13-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_09930 b51ce4a3c5ae567119ccf30fd63eaefa 147 SUPERFAMILY SSF54565 2 94 5.23E-30 T 13-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_09930 b51ce4a3c5ae567119ccf30fd63eaefa 147 TIGRFAM TIGR00002 S16: ribosomal protein bS16 3 79 4.5E-28 T 13-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_09930 b51ce4a3c5ae567119ccf30fd63eaefa 147 Gene3D G3DSA:3.30.1320.10 1 107 1.5E-27 T 13-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_09930 b51ce4a3c5ae567119ccf30fd63eaefa 147 Pfam PF00886 Ribosomal protein S16 9 67 1.8E-20 T 13-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_43125 10daa5f1c8d251ea74e9f84b074647ef 507 Pfam PF00501 AMP-binding enzyme 16 399 2.1E-87 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_43125 10daa5f1c8d251ea74e9f84b074647ef 507 Gene3D G3DSA:3.40.50.12780 3 392 6.7E-99 T 13-10-2018 RAM_43125 10daa5f1c8d251ea74e9f84b074647ef 507 Pfam PF13193 AMP-binding enzyme C-terminal domain 408 481 5.3E-17 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_43125 10daa5f1c8d251ea74e9f84b074647ef 507 Gene3D G3DSA:3.30.300.310 395 496 2.6E-28 T 13-10-2018 RAM_43125 10daa5f1c8d251ea74e9f84b074647ef 507 ProSitePatterns PS00455 Putative AMP-binding domain signature. 154 165 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_43125 10daa5f1c8d251ea74e9f84b074647ef 507 SUPERFAMILY SSF56801 8 493 2.49E-132 T 13-10-2018 RAM_00050 6e326a739e029accdeb5683f1526db1a 395 SUPERFAMILY SSF56349 70 373 4.71E-40 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RAM_00050 6e326a739e029accdeb5683f1526db1a 395 Gene3D G3DSA:1.10.150.130 67 174 5.3E-10 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal RAM_00050 6e326a739e029accdeb5683f1526db1a 395 Pfam PF00589 Phage integrase family 184 374 3.0E-17 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RAM_00050 6e326a739e029accdeb5683f1526db1a 395 Gene3D G3DSA:1.10.443.10 183 389 1.5E-31 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 RAM_29885 5a6492eed595461bcab19f5887d50fa4 584 Gene3D G3DSA:1.10.10.2600 170 351 1.3E-9 T 13-10-2018 IPR038109 DNA-binding recombinase domain superfamily RAM_29885 5a6492eed595461bcab19f5887d50fa4 584 Pfam PF13408 Recombinase zinc beta ribbon domain 373 404 8.2E-7 T 13-10-2018 IPR025827 Recombinase zinc beta ribbon domain RAM_29885 5a6492eed595461bcab19f5887d50fa4 584 Pfam PF00239 Resolvase, N terminal domain 33 179 1.3E-11 T 13-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 RAM_29885 5a6492eed595461bcab19f5887d50fa4 584 SMART SM00857 32 186 5.4E-6 T 13-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 RAM_29885 5a6492eed595461bcab19f5887d50fa4 584 Gene3D G3DSA:3.40.50.1390 31 167 1.4E-6 T 13-10-2018 RAM_29885 5a6492eed595461bcab19f5887d50fa4 584 Pfam PF07508 Recombinase 223 348 7.9E-18 T 13-10-2018 IPR011109 DNA-binding recombinase domain GO:0000150|GO:0003677 RAM_29885 5a6492eed595461bcab19f5887d50fa4 584 SUPERFAMILY SSF53041 33 178 2.62E-11 T 13-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 RAM_00325 3dd06642628d8fcbab9a3904022ee1fd 346 Pfam PF01734 Patatin-like phospholipase 11 204 4.3E-11 T 13-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 RAM_00325 3dd06642628d8fcbab9a3904022ee1fd 346 Gene3D G3DSA:3.40.1090.10 2 109 1.1E-10 T 13-10-2018 RAM_00325 3dd06642628d8fcbab9a3904022ee1fd 346 Gene3D G3DSA:3.40.1090.10 110 262 6.2E-8 T 13-10-2018 RAM_00325 3dd06642628d8fcbab9a3904022ee1fd 346 SUPERFAMILY SSF52151 9 246 1.39E-28 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RAM_35035 647bd6d483e3c9417727818bba379958 1668 SUPERFAMILY SSF53223 806 1003 3.93E-23 T 13-10-2018 RAM_35035 647bd6d483e3c9417727818bba379958 1668 Pfam PF05088 Bacterial NAD-glutamate dehydrogenase 91 1664 0.0 T 13-10-2018 IPR028971 NAD-glutamate dehydrogenase GO:0004352|GO:0019551 KEGG: 00220+1.4.1.2|KEGG: 00250+1.4.1.2|KEGG: 00430+1.4.1.2|KEGG: 00910+1.4.1.2|MetaCyc: PWY-5022|MetaCyc: PWY-6728|MetaCyc: PWY-7126 RAM_35035 647bd6d483e3c9417727818bba379958 1668 PIRSF PIRSF036761 28 1668 0.0 T 13-10-2018 IPR007780 NAD-glutamate dehydrogenase, bacteria GO:0004352|GO:0019551 KEGG: 00220+1.4.1.2|KEGG: 00250+1.4.1.2|KEGG: 00430+1.4.1.2|KEGG: 00910+1.4.1.2|MetaCyc: PWY-5022|MetaCyc: PWY-6728|MetaCyc: PWY-7126 RAM_35035 647bd6d483e3c9417727818bba379958 1668 SUPERFAMILY SSF51735 992 1272 4.99E-22 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_26870 0c655306598d076f42aeb423ac4cdeb9 355 Pfam PF01068 ATP dependent DNA ligase domain 179 350 2.6E-13 T 13-10-2018 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 RAM_26870 0c655306598d076f42aeb423ac4cdeb9 355 Gene3D G3DSA:3.30.1490.70 177 351 6.8E-40 T 13-10-2018 RAM_26870 0c655306598d076f42aeb423ac4cdeb9 355 Gene3D G3DSA:3.30.470.30 190 310 6.8E-40 T 13-10-2018 RAM_26870 0c655306598d076f42aeb423ac4cdeb9 355 SUPERFAMILY SSF56091 176 351 4.6E-27 T 13-10-2018 RAM_26870 0c655306598d076f42aeb423ac4cdeb9 355 Pfam PF13298 DNA polymerase Ligase (LigD) 37 134 4.5E-35 T 13-10-2018 IPR014144 DNA ligase D, 3'-phosphoesterase domain RAM_26870 0c655306598d076f42aeb423ac4cdeb9 355 TIGRFAM TIGR02777 LigD_PE_dom: DNA ligase D, 3'-phosphoesterase domain 5 150 4.8E-48 T 13-10-2018 IPR014144 DNA ligase D, 3'-phosphoesterase domain RAM_01485 01cb6f947097d126349513c8f0c018fa 143 SUPERFAMILY SSF54427 16 122 2.87E-13 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_01485 01cb6f947097d126349513c8f0c018fa 143 Gene3D G3DSA:3.10.450.50 7 132 3.7E-14 T 13-10-2018 RAM_23205 6490d68f54210a3f4f5b7a5a53218781 274 SMART SM00342 186 269 9.2E-15 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_23205 6490d68f54210a3f4f5b7a5a53218781 274 SUPERFAMILY SSF46689 222 270 1.41E-6 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_23205 6490d68f54210a3f4f5b7a5a53218781 274 Gene3D G3DSA:1.10.10.60 171 273 2.0E-20 T 13-10-2018 RAM_23205 6490d68f54210a3f4f5b7a5a53218781 274 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 223 265 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RAM_23205 6490d68f54210a3f4f5b7a5a53218781 274 Pfam PF12833 Helix-turn-helix domain 192 270 1.3E-18 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_44165 4a2c89b893926566d718b27f5f3eb518 379 SUPERFAMILY SSF51556 6 376 2.04E-103 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_44165 4a2c89b893926566d718b27f5f3eb518 379 Pfam PF01244 Membrane dipeptidase (Peptidase family M19) 12 373 1.7E-111 T 13-10-2018 IPR008257 Peptidase M19 GO:0006508|GO:0016805 MetaCyc: PWY-7533|Reactome: R-HSA-2142691|Reactome: R-HSA-5423646 RAM_44165 4a2c89b893926566d718b27f5f3eb518 379 Gene3D G3DSA:3.20.20.140 4 379 1.5E-145 T 13-10-2018 RAM_01625 66cb169763409ea468fbbd01c7e2099f 535 Gene3D G3DSA:1.20.200.30 4 216 8.1E-63 T 13-10-2018 RAM_01625 66cb169763409ea468fbbd01c7e2099f 535 SUPERFAMILY SSF48557 284 525 8.8E-53 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 RAM_01625 66cb169763409ea468fbbd01c7e2099f 535 Gene3D G3DSA:1.20.200.10 268 443 8.1E-51 T 13-10-2018 RAM_01625 66cb169763409ea468fbbd01c7e2099f 535 Gene3D G3DSA:1.10.40.30 445 528 3.8E-25 T 13-10-2018 RAM_01625 66cb169763409ea468fbbd01c7e2099f 535 SUPERFAMILY SSF48557 24 209 9.11E-45 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 RAM_01625 66cb169763409ea468fbbd01c7e2099f 535 PRINTS PR00149 Fumarate lyase superfamily signature 149 167 9.2E-7 T 13-10-2018 IPR000362 Fumarate lyase family RAM_01625 66cb169763409ea468fbbd01c7e2099f 535 PRINTS PR00149 Fumarate lyase superfamily signature 104 122 9.2E-7 T 13-10-2018 IPR000362 Fumarate lyase family RAM_01625 66cb169763409ea468fbbd01c7e2099f 535 SMART SM00998 446 525 1.4E-20 T 13-10-2018 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RAM_01625 66cb169763409ea468fbbd01c7e2099f 535 ProSitePatterns PS00163 Fumarate lyases signature. 358 367 - T 13-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 RAM_01625 66cb169763409ea468fbbd01c7e2099f 535 Pfam PF10397 Adenylosuccinate lyase C-terminus 447 524 3.1E-15 T 13-10-2018 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RAM_01625 66cb169763409ea468fbbd01c7e2099f 535 Pfam PF00206 Lyase 290 381 4.2E-15 T 13-10-2018 IPR022761 Fumarate lyase, N-terminal RAM_01625 66cb169763409ea468fbbd01c7e2099f 535 Pfam PF00206 Lyase 32 206 3.3E-21 T 13-10-2018 IPR022761 Fumarate lyase, N-terminal RAM_03660 5800669d584574c47691786bbb839905 536 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 158 168 - T 13-10-2018 IPR022398 Peptidase S8, subtilisin, His-active site RAM_03660 5800669d584574c47691786bbb839905 536 SUPERFAMILY SSF52743 88 467 4.12E-63 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RAM_03660 5800669d584574c47691786bbb839905 536 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 407 417 - T 13-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site RAM_03660 5800669d584574c47691786bbb839905 536 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 117 127 - T 13-10-2018 IPR023827 Peptidase S8, subtilisin, Asp-active site RAM_03660 5800669d584574c47691786bbb839905 536 Pfam PF00082 Subtilase family 112 458 1.1E-38 T 13-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RAM_03660 5800669d584574c47691786bbb839905 536 PRINTS PR00723 Subtilisin serine protease family (S8) signature 112 131 7.9E-14 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related RAM_03660 5800669d584574c47691786bbb839905 536 PRINTS PR00723 Subtilisin serine protease family (S8) signature 406 422 7.9E-14 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related RAM_03660 5800669d584574c47691786bbb839905 536 PRINTS PR00723 Subtilisin serine protease family (S8) signature 154 167 7.9E-14 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related RAM_03660 5800669d584574c47691786bbb839905 536 Gene3D G3DSA:3.40.50.200 232 471 3.3E-52 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RAM_03660 5800669d584574c47691786bbb839905 536 Gene3D G3DSA:3.40.50.200 47 219 6.2E-32 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RAM_22465 bbe34de6d35e9c3bfb894787d30f644b 649 SUPERFAMILY SSF53067 255 498 7.77E-74 T 13-10-2018 RAM_22465 bbe34de6d35e9c3bfb894787d30f644b 649 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 5 252 3.9E-74 T 13-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 RAM_22465 bbe34de6d35e9c3bfb894787d30f644b 649 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 363 383 - T 13-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 RAM_22465 bbe34de6d35e9c3bfb894787d30f644b 649 Gene3D G3DSA:3.30.420.40 254 501 2.4E-84 T 13-10-2018 RAM_22465 bbe34de6d35e9c3bfb894787d30f644b 649 SUPERFAMILY SSF53067 5 255 1.73E-89 T 13-10-2018 RAM_22465 bbe34de6d35e9c3bfb894787d30f644b 649 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 261 451 1.8E-60 T 13-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 RAM_22465 bbe34de6d35e9c3bfb894787d30f644b 649 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 5 497 1.7E-210 T 13-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 RAM_22465 bbe34de6d35e9c3bfb894787d30f644b 649 Hamap MF_00186 Glycerol kinase [glpK]. 3 498 52.742 T 13-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 RAM_22465 bbe34de6d35e9c3bfb894787d30f644b 649 Gene3D G3DSA:3.30.420.40 3 253 7.7E-108 T 13-10-2018 RAM_25135 f88d80403ab6cac269263141433bc00a 347 Gene3D G3DSA:3.40.50.1400 6 307 3.0E-113 T 13-10-2018 RAM_25135 f88d80403ab6cac269263141433bc00a 347 TIGRFAM TIGR00109 hemH: ferrochelatase 39 310 6.1E-39 T 13-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 RAM_25135 f88d80403ab6cac269263141433bc00a 347 SUPERFAMILY SSF53800 3 317 4.41E-82 T 13-10-2018 RAM_25135 f88d80403ab6cac269263141433bc00a 347 Hamap MF_00323 Ferrochelatase [hemH]. 2 311 30.71 T 13-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 RAM_25135 f88d80403ab6cac269263141433bc00a 347 Pfam PF00762 Ferrochelatase 4 310 6.7E-95 T 13-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 RAM_25135 f88d80403ab6cac269263141433bc00a 347 Gene3D G3DSA:3.40.50.1400 146 292 3.0E-113 T 13-10-2018 RAM_18525 f8f11e513a1e83737f8cae186103e014 331 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 227 318 6.3E-15 T 13-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal RAM_18525 f8f11e513a1e83737f8cae186103e014 331 Gene3D G3DSA:3.30.390.50 223 326 6.8E-22 T 13-10-2018 RAM_18525 f8f11e513a1e83737f8cae186103e014 331 SMART SM01092 226 324 8.8E-27 T 13-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal RAM_18525 f8f11e513a1e83737f8cae186103e014 331 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 3 219 4.5E-53 T 13-10-2018 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 RAM_18525 f8f11e513a1e83737f8cae186103e014 331 SUPERFAMILY SSF56176 1 219 1.74E-60 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RAM_18525 f8f11e513a1e83737f8cae186103e014 331 SUPERFAMILY SSF55447 225 324 2.88E-25 T 13-10-2018 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily RAM_18525 f8f11e513a1e83737f8cae186103e014 331 Gene3D G3DSA:3.30.465.10 1 220 8.0E-82 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 RAM_47895 9d9804843b31d9ae89a745fbbb9ba27b 747 Gene3D G3DSA:1.10.4080.10 387 732 8.1E-24 T 13-10-2018 IPR036705 ADP-ribosylation/Crystallin J1 superfamily RAM_47895 9d9804843b31d9ae89a745fbbb9ba27b 747 SUPERFAMILY SSF101478 388 722 3.66E-24 T 13-10-2018 IPR036705 ADP-ribosylation/Crystallin J1 superfamily RAM_47895 9d9804843b31d9ae89a745fbbb9ba27b 747 Pfam PF15567 Immunity protein 35 4 100 5.7E-28 T 13-10-2018 IPR029082 Immunity protein 35 RAM_47895 9d9804843b31d9ae89a745fbbb9ba27b 747 Pfam PF03747 ADP-ribosylglycohydrolase 392 704 5.2E-29 T 13-10-2018 IPR005502 ADP-ribosylation/Crystallin J1 RAM_06335 44ddef27120ced4b5c284caef4df9591 194 Gene3D G3DSA:1.10.357.10 62 193 2.8E-22 T 13-10-2018 RAM_06335 44ddef27120ced4b5c284caef4df9591 194 SUPERFAMILY SSF48498 69 192 2.11E-16 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_06335 44ddef27120ced4b5c284caef4df9591 194 PRINTS PR00400 Tetracycline repressor protein signature 74 93 1.6E-12 T 13-10-2018 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 RAM_06335 44ddef27120ced4b5c284caef4df9591 194 PRINTS PR00400 Tetracycline repressor protein signature 94 117 1.6E-12 T 13-10-2018 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 RAM_06335 44ddef27120ced4b5c284caef4df9591 194 PRINTS PR00400 Tetracycline repressor protein signature 20 43 1.6E-12 T 13-10-2018 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 RAM_06335 44ddef27120ced4b5c284caef4df9591 194 PRINTS PR00400 Tetracycline repressor protein signature 128 147 1.6E-12 T 13-10-2018 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 RAM_06335 44ddef27120ced4b5c284caef4df9591 194 Gene3D G3DSA:1.10.10.60 1 61 1.6E-23 T 13-10-2018 RAM_06335 44ddef27120ced4b5c284caef4df9591 194 Pfam PF02909 Tetracyclin repressor, C-terminal all-alpha domain 74 187 1.2E-13 T 13-10-2018 IPR004111 Tetracycline transcriptional regulator, TetR, C-terminal GO:0045892 RAM_06335 44ddef27120ced4b5c284caef4df9591 194 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 8 21 5.9E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_06335 44ddef27120ced4b5c284caef4df9591 194 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 29 52 5.9E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_06335 44ddef27120ced4b5c284caef4df9591 194 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 54 4.8E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_06335 44ddef27120ced4b5c284caef4df9591 194 SUPERFAMILY SSF46689 3 62 4.0E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_42410 fcc611c57c7c14b2f91f03d29c6b6432 179 Gene3D G3DSA:1.10.357.10 7 178 2.5E-9 T 13-10-2018 RAM_46995 1d9d4b70f038c50205c1b425ebd9ca30 141 Pfam PF13411 MerR HTH family regulatory protein 18 83 4.1E-16 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_46995 1d9d4b70f038c50205c1b425ebd9ca30 141 Gene3D G3DSA:1.10.1660.10 16 133 3.5E-21 T 13-10-2018 RAM_46995 1d9d4b70f038c50205c1b425ebd9ca30 141 SUPERFAMILY SSF46955 17 103 2.01E-19 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily RAM_46995 1d9d4b70f038c50205c1b425ebd9ca30 141 SMART SM00422 16 85 1.1E-23 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_11100 d5d0644eb5308d63122eebd5f3caa0b4 336 PIRSF PIRSF006468 1 336 1.0E-127 T 13-10-2018 IPR005786 Branched-chain amino acid aminotransferase II GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767|Reactome: R-HSA-70895 RAM_11100 d5d0644eb5308d63122eebd5f3caa0b4 336 SUPERFAMILY SSF56752 2 332 7.19E-111 T 13-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 RAM_11100 d5d0644eb5308d63122eebd5f3caa0b4 336 Pfam PF01063 Amino-transferase class IV 44 290 1.4E-32 T 13-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 RAM_11100 d5d0644eb5308d63122eebd5f3caa0b4 336 Gene3D G3DSA:3.30.470.10 2 331 4.4E-137 T 13-10-2018 RAM_11100 d5d0644eb5308d63122eebd5f3caa0b4 336 Gene3D G3DSA:3.20.10.10 146 318 4.4E-137 T 13-10-2018 RAM_11100 d5d0644eb5308d63122eebd5f3caa0b4 336 TIGRFAM TIGR01123 ilvE_II: branched-chain amino acid aminotransferase 18 333 1.3E-131 T 13-10-2018 IPR005786 Branched-chain amino acid aminotransferase II GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767|Reactome: R-HSA-70895 RAM_11100 d5d0644eb5308d63122eebd5f3caa0b4 336 ProSitePatterns PS00770 Aminotransferases class-IV signature. 208 241 - T 13-10-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824 Reactome: R-HSA-70895 RAM_19970 6da1223ec3aca1a044650c90dbcc9864 318 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 3 297 5.1E-37 T 13-10-2018 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type Reactome: R-HSA-446210 RAM_19970 6da1223ec3aca1a044650c90dbcc9864 318 SUPERFAMILY SSF53067 115 308 1.67E-38 T 13-10-2018 RAM_19970 6da1223ec3aca1a044650c90dbcc9864 318 SUPERFAMILY SSF53067 2 109 5.78E-14 T 13-10-2018 RAM_19970 6da1223ec3aca1a044650c90dbcc9864 318 Gene3D G3DSA:3.30.420.40 2 297 2.2E-62 T 13-10-2018 RAM_19970 6da1223ec3aca1a044650c90dbcc9864 318 Gene3D G3DSA:3.30.420.40 113 285 2.2E-62 T 13-10-2018 RAM_00305 7663ccd9ee872d55b1415abfbf82fe37 1056 Pfam PF01804 Penicillin amidase 105 909 1.7E-121 T 13-10-2018 IPR002692 Penicillin/GL-7-ACA/AHL/aculeacin-A acylase GO:0016787|GO:0017000 RAM_00305 7663ccd9ee872d55b1415abfbf82fe37 1056 Gene3D G3DSA:3.60.20.10 530 716 1.0E-25 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RAM_00305 7663ccd9ee872d55b1415abfbf82fe37 1056 SUPERFAMILY SSF49785 927 1054 2.91E-28 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_00305 7663ccd9ee872d55b1415abfbf82fe37 1056 Gene3D G3DSA:2.60.120.260 922 1054 4.9E-36 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_00305 7663ccd9ee872d55b1415abfbf82fe37 1056 Gene3D G3DSA:3.60.20.10 385 471 2.7E-11 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RAM_00305 7663ccd9ee872d55b1415abfbf82fe37 1056 SUPERFAMILY SSF56235 104 836 1.49E-104 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RAM_00305 7663ccd9ee872d55b1415abfbf82fe37 1056 Gene3D G3DSA:1.10.439.10 103 261 7.4E-29 T 13-10-2018 IPR023343 Penicillin amidase type, domain 1 GO:0016811 RAM_00305 7663ccd9ee872d55b1415abfbf82fe37 1056 Pfam PF00754 F5/8 type C domain 936 1050 6.5E-21 T 13-10-2018 IPR000421 Coagulation factor 5/8 C-terminal domain RAM_23590 620500a6d18be07bb0734b90a089fc93 337 Gene3D G3DSA:2.130.10.10 111 336 4.5E-10 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RAM_23590 620500a6d18be07bb0734b90a089fc93 337 SUPERFAMILY SSF101898 63 329 1.41E-14 T 13-10-2018 RAM_30530 329bd427b0c36ee63887f02567282da8 455 Gene3D G3DSA:1.20.1250.20 10 440 3.9E-70 T 13-10-2018 RAM_30530 329bd427b0c36ee63887f02567282da8 455 ProSitePatterns PS00217 Sugar transport proteins signature 2. 123 148 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RAM_30530 329bd427b0c36ee63887f02567282da8 455 Pfam PF00083 Sugar (and other) transporter 228 429 5.5E-14 T 13-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 RAM_30530 329bd427b0c36ee63887f02567282da8 455 Pfam PF00083 Sugar (and other) transporter 15 227 3.1E-23 T 13-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 RAM_30530 329bd427b0c36ee63887f02567282da8 455 SUPERFAMILY SSF103473 6 430 1.57E-66 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_28675 099104708603902c41dc1ecbc95bda12 895 SUPERFAMILY SSF51445 332 597 6.33E-29 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_28675 099104708603902c41dc1ecbc95bda12 895 Gene3D G3DSA:3.20.20.80 330 575 2.6E-31 T 13-10-2018 RAM_28675 099104708603902c41dc1ecbc95bda12 895 SUPERFAMILY SSF50370 759 892 1.15E-38 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_28675 099104708603902c41dc1ecbc95bda12 895 SMART SM00458 760 893 3.8E-8 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_28675 099104708603902c41dc1ecbc95bda12 895 Pfam PF00703 Glycosyl hydrolases family 2 208 327 7.3E-8 T 13-10-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RAM_28675 099104708603902c41dc1ecbc95bda12 895 SUPERFAMILY SSF49785 63 206 9.5E-19 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_28675 099104708603902c41dc1ecbc95bda12 895 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 98 206 1.8E-10 T 13-10-2018 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_28675 099104708603902c41dc1ecbc95bda12 895 Gene3D G3DSA:2.80.10.50 846 895 1.3E-16 T 13-10-2018 RAM_28675 099104708603902c41dc1ecbc95bda12 895 Gene3D G3DSA:2.80.10.50 793 845 2.6E-13 T 13-10-2018 RAM_28675 099104708603902c41dc1ecbc95bda12 895 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 391 498 2.6E-14 T 13-10-2018 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 RAM_28675 099104708603902c41dc1ecbc95bda12 895 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 795 880 2.9E-22 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_28675 099104708603902c41dc1ecbc95bda12 895 Gene3D G3DSA:2.60.120.260 28 206 1.5E-18 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_28675 099104708603902c41dc1ecbc95bda12 895 Gene3D G3DSA:2.60.40.10 207 327 4.1E-8 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_28675 099104708603902c41dc1ecbc95bda12 895 Gene3D G3DSA:2.80.10.50 745 792 1.6E-5 T 13-10-2018 RAM_36085 f53003a3c389479744ad4fb8c309caba 199 Pfam PF13302 Acetyltransferase (GNAT) domain 9 152 1.6E-30 T 13-10-2018 IPR000182 GNAT domain RAM_36085 f53003a3c389479744ad4fb8c309caba 199 SUPERFAMILY SSF55729 2 161 1.73E-39 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_36085 f53003a3c389479744ad4fb8c309caba 199 Gene3D G3DSA:3.40.630.30 2 163 2.7E-45 T 13-10-2018 RAM_08460 321325f6787fa36e73c5d33744ad8e68 347 Pfam PF00753 Metallo-beta-lactamase superfamily 37 253 2.9E-23 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_08460 321325f6787fa36e73c5d33744ad8e68 347 Gene3D G3DSA:3.60.15.10 17 280 5.7E-55 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_08460 321325f6787fa36e73c5d33744ad8e68 347 SMART SM00849 38 253 7.2E-22 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_08460 321325f6787fa36e73c5d33744ad8e68 347 SUPERFAMILY SSF56281 3 344 5.18E-55 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_09775 c3646c348f8f7d68be9ad12cf62292c3 102 ProSitePatterns PS00768 Transthyretin signature 1. 4 19 - T 13-10-2018 IPR023418 Transthyretin, thyroxine binding site Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 RAM_09775 c3646c348f8f7d68be9ad12cf62292c3 102 Pfam PF00576 HIUase/Transthyretin family 1 101 4.0E-32 T 13-10-2018 IPR023416 Transthyretin/hydroxyisourate hydrolase domain Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 RAM_09775 c3646c348f8f7d68be9ad12cf62292c3 102 SUPERFAMILY SSF49472 1 102 2.35E-33 T 13-10-2018 IPR036817 Transthyretin/hydroxyisourate hydrolase domain superfamily Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 RAM_09775 c3646c348f8f7d68be9ad12cf62292c3 102 TIGRFAM TIGR02962 hdxy_isourate: hydroxyisourate hydrolase 1 102 7.1E-32 T 13-10-2018 IPR014306 Hydroxyisourate hydrolase GO:0006144|GO:0033971 KEGG: 00230+3.5.2.17|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 RAM_09775 c3646c348f8f7d68be9ad12cf62292c3 102 Gene3D G3DSA:2.60.40.180 1 102 8.7E-35 T 13-10-2018 IPR036817 Transthyretin/hydroxyisourate hydrolase domain superfamily Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 RAM_29255 f91825240ed9696a48e27cf8db256b1b 454 SMART SM00304 182 234 2.2E-11 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_29255 f91825240ed9696a48e27cf8db256b1b 454 SUPERFAMILY SSF158472 182 231 1.7E-7 T 13-10-2018 RAM_29255 f91825240ed9696a48e27cf8db256b1b 454 SMART SM00387 342 453 1.5E-29 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_29255 f91825240ed9696a48e27cf8db256b1b 454 Gene3D G3DSA:3.30.565.10 307 453 1.5E-37 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_29255 f91825240ed9696a48e27cf8db256b1b 454 Pfam PF00672 HAMP domain 182 230 1.4E-7 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_29255 f91825240ed9696a48e27cf8db256b1b 454 Gene3D G3DSA:1.10.287.130 186 303 3.2E-26 T 13-10-2018 RAM_29255 f91825240ed9696a48e27cf8db256b1b 454 Pfam PF00512 His Kinase A (phospho-acceptor) domain 238 301 5.3E-13 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_29255 f91825240ed9696a48e27cf8db256b1b 454 SUPERFAMILY SSF55874 307 452 4.27E-36 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_29255 f91825240ed9696a48e27cf8db256b1b 454 SMART SM00388 235 302 4.1E-13 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_29255 f91825240ed9696a48e27cf8db256b1b 454 SUPERFAMILY SSF47384 218 302 1.16E-15 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RAM_29255 f91825240ed9696a48e27cf8db256b1b 454 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 343 452 7.3E-23 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_29255 f91825240ed9696a48e27cf8db256b1b 454 PRINTS PR00344 Bacterial sensor protein C-terminal signature 377 391 4.0E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_29255 f91825240ed9696a48e27cf8db256b1b 454 PRINTS PR00344 Bacterial sensor protein C-terminal signature 437 450 4.0E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_29255 f91825240ed9696a48e27cf8db256b1b 454 PRINTS PR00344 Bacterial sensor protein C-terminal signature 395 405 4.0E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_29255 f91825240ed9696a48e27cf8db256b1b 454 PRINTS PR00344 Bacterial sensor protein C-terminal signature 413 431 4.0E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_22985 f7627238f642a16bf7d8d58cbcd761df 307 Gene3D G3DSA:3.20.20.80 3 306 5.1E-110 T 13-10-2018 RAM_22985 f7627238f642a16bf7d8d58cbcd761df 307 Pfam PF00331 Glycosyl hydrolase family 10 6 304 1.9E-100 T 13-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_22985 f7627238f642a16bf7d8d58cbcd761df 307 SMART SM00633 43 305 4.3E-101 T 13-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_22985 f7627238f642a16bf7d8d58cbcd761df 307 SUPERFAMILY SSF51445 3 305 1.2E-110 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_22985 f7627238f642a16bf7d8d58cbcd761df 307 PRINTS PR00134 Glycosyl hydrolase family 10 signature 160 171 2.2E-18 T 13-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_22985 f7627238f642a16bf7d8d58cbcd761df 307 PRINTS PR00134 Glycosyl hydrolase family 10 signature 189 201 2.2E-18 T 13-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_22985 f7627238f642a16bf7d8d58cbcd761df 307 PRINTS PR00134 Glycosyl hydrolase family 10 signature 74 86 2.2E-18 T 13-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_22985 f7627238f642a16bf7d8d58cbcd761df 307 PRINTS PR00134 Glycosyl hydrolase family 10 signature 116 127 2.2E-18 T 13-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_20360 a34a73ce8552e087c24b45c4d6419931 475 SUPERFAMILY SSF49899 25 341 1.03E-149 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily RAM_20360 a34a73ce8552e087c24b45c4d6419931 475 Pfam PF09206 Alpha-L-arabinofuranosidase B, catalytic 26 340 2.3E-153 T 13-10-2018 IPR015289 Alpha-L-arabinofuranosidase B, catalytic GO:0031221|GO:0046556 KEGG: 00520+3.2.1.55 RAM_20360 a34a73ce8552e087c24b45c4d6419931 475 Pfam PF00652 Ricin-type beta-trefoil lectin domain 348 472 3.4E-28 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_20360 a34a73ce8552e087c24b45c4d6419931 475 Gene3D G3DSA:2.80.10.50 399 436 7.0E-11 T 13-10-2018 RAM_20360 a34a73ce8552e087c24b45c4d6419931 475 Gene3D G3DSA:2.80.10.50 348 398 5.6E-7 T 13-10-2018 RAM_20360 a34a73ce8552e087c24b45c4d6419931 475 SMART SM00458 348 475 1.2E-30 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_20360 a34a73ce8552e087c24b45c4d6419931 475 Gene3D G3DSA:2.60.120.200 24 343 2.7E-159 T 13-10-2018 RAM_20360 a34a73ce8552e087c24b45c4d6419931 475 Gene3D G3DSA:2.80.10.50 437 475 7.6E-14 T 13-10-2018 RAM_20360 a34a73ce8552e087c24b45c4d6419931 475 SUPERFAMILY SSF50370 346 474 4.33E-36 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_16240 589f8879b517d79c374067a2d5d3948e 438 Pfam PF13416 Bacterial extracellular solute-binding protein 54 346 4.7E-30 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein RAM_16240 589f8879b517d79c374067a2d5d3948e 438 Gene3D G3DSA:3.40.190.10 56 355 9.7E-106 T 13-10-2018 RAM_16240 589f8879b517d79c374067a2d5d3948e 438 Gene3D G3DSA:3.40.190.10 149 415 9.7E-106 T 13-10-2018 RAM_16240 589f8879b517d79c374067a2d5d3948e 438 SUPERFAMILY SSF53850 42 420 5.07E-66 T 13-10-2018 RAM_03190 0150d2a88155bda6c98cd4e9b8ca721f 351 Pfam PF01761 3-dehydroquinate synthase 60 302 2.5E-80 T 13-10-2018 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 RAM_03190 0150d2a88155bda6c98cd4e9b8ca721f 351 SUPERFAMILY SSF56796 5 331 2.75E-87 T 13-10-2018 RAM_03190 0150d2a88155bda6c98cd4e9b8ca721f 351 Gene3D G3DSA:3.40.50.1970 1 164 2.7E-47 T 13-10-2018 RAM_03190 0150d2a88155bda6c98cd4e9b8ca721f 351 PIRSF PIRSF001455 41 334 1.7E-78 T 13-10-2018 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 RAM_03190 0150d2a88155bda6c98cd4e9b8ca721f 351 Gene3D G3DSA:1.20.1090.10 165 336 1.1E-38 T 13-10-2018 RAM_23740 34885e792f2c286420d69f4141a72a35 192 TIGRFAM TIGR03847 TIGR03847: conserved hypothetical protein 5 180 6.6E-79 T 13-10-2018 IPR021441 Protein of unknown function DUF3090 RAM_23740 34885e792f2c286420d69f4141a72a35 192 Pfam PF11290 Protein of unknown function (DUF3090) 6 176 3.3E-69 T 13-10-2018 IPR021441 Protein of unknown function DUF3090 RAM_09160 2b9409aa034d6c957249e4c650574b7c 320 Pfam PF12697 Alpha/beta hydrolase family 31 273 1.7E-26 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_09160 2b9409aa034d6c957249e4c650574b7c 320 PRINTS PR00111 Alpha/beta hydrolase fold signature 54 69 3.5E-20 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_09160 2b9409aa034d6c957249e4c650574b7c 320 PRINTS PR00111 Alpha/beta hydrolase fold signature 112 125 3.5E-20 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_09160 2b9409aa034d6c957249e4c650574b7c 320 PRINTS PR00111 Alpha/beta hydrolase fold signature 98 111 3.5E-20 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_09160 2b9409aa034d6c957249e4c650574b7c 320 PRINTS PR00111 Alpha/beta hydrolase fold signature 225 239 3.5E-20 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_09160 2b9409aa034d6c957249e4c650574b7c 320 Gene3D G3DSA:3.40.50.1820 5 290 6.5E-72 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_09160 2b9409aa034d6c957249e4c650574b7c 320 SUPERFAMILY SSF53474 11 280 1.45E-64 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_06940 0ea8cbbfc25f7610df97d51dc4db2fa1 158 Gene3D G3DSA:3.40.35.10 4 155 5.1E-38 T 13-10-2018 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily GO:0005737|GO:0008982|GO:0009401 RAM_06940 0ea8cbbfc25f7610df97d51dc4db2fa1 158 SUPERFAMILY SSF52728 5 156 9.02E-37 T 13-10-2018 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily GO:0005737|GO:0008982|GO:0009401 RAM_06940 0ea8cbbfc25f7610df97d51dc4db2fa1 158 Pfam PF03830 PTS system sorbose subfamily IIB component 5 145 6.0E-37 T 13-10-2018 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 RAM_27625 20979b5d5be19135b4282ccb13f22cc2 381 Gene3D G3DSA:3.40.50.2000 196 365 8.6E-103 T 13-10-2018 RAM_27625 20979b5d5be19135b4282ccb13f22cc2 381 SUPERFAMILY SSF53756 1 380 3.14E-68 T 13-10-2018 RAM_27625 20979b5d5be19135b4282ccb13f22cc2 381 Gene3D G3DSA:3.40.50.11450 1 378 8.6E-103 T 13-10-2018 RAM_27625 20979b5d5be19135b4282ccb13f22cc2 381 Pfam PF06722 Protein of unknown function (DUF1205) 174 266 4.2E-8 T 13-10-2018 IPR010610 Domain of unknown function DUF1205 RAM_44110 8d41f973a046723fe38eb6cc44c686f2 300 Pfam PF05721 Phytanoyl-CoA dioxygenase (PhyH) 49 262 3.1E-33 T 13-10-2018 IPR008775 Phytanoyl-CoA dioxygenase RAM_44110 8d41f973a046723fe38eb6cc44c686f2 300 Gene3D G3DSA:2.60.120.620 4 299 1.8E-102 T 13-10-2018 RAM_44110 8d41f973a046723fe38eb6cc44c686f2 300 TIGRFAM TIGR02408 ectoine_ThpD: ectoine hydroxylase 24 298 3.3E-130 T 13-10-2018 IPR012774 Ectoine dioxygenase GO:0016706|GO:0055114 RAM_44110 8d41f973a046723fe38eb6cc44c686f2 300 SUPERFAMILY SSF51197 37 297 3.3E-56 T 13-10-2018 RAM_44740 1736e3139f96c7ac503bbaff88644c6c 325 SMART SM00382 29 212 1.2E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_44740 1736e3139f96c7ac503bbaff88644c6c 325 TIGRFAM TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein 12 308 8.2E-108 T 13-10-2018 IPR005894 Daunorubicin resistance ABC transporter ATP-binding subunit DrrA GO:0005524|GO:0043215|GO:1900753 RAM_44740 1736e3139f96c7ac503bbaff88644c6c 325 SUPERFAMILY SSF52540 4 226 6.89E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_44740 1736e3139f96c7ac503bbaff88644c6c 325 Pfam PF00005 ABC transporter 20 163 1.8E-25 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_44740 1736e3139f96c7ac503bbaff88644c6c 325 Gene3D G3DSA:3.40.50.300 1 241 5.8E-66 T 13-10-2018 RAM_44740 1736e3139f96c7ac503bbaff88644c6c 325 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_44740 1736e3139f96c7ac503bbaff88644c6c 325 Pfam PF13732 Domain of unknown function (DUF4162) 217 306 8.2E-7 T 13-10-2018 IPR025302 Domain of unknown function DUF4162 RAM_28625 82076694cbf9b9fad95ab62f07a48985 830 Gene3D G3DSA:1.25.40.10 632 820 8.3E-7 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_28625 82076694cbf9b9fad95ab62f07a48985 830 Gene3D G3DSA:3.40.50.300 68 126 2.8E-5 T 13-10-2018 RAM_28625 82076694cbf9b9fad95ab62f07a48985 830 SUPERFAMILY SSF48452 520 721 1.97E-9 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_28625 82076694cbf9b9fad95ab62f07a48985 830 Gene3D G3DSA:1.25.40.10 484 631 1.6E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_30365 47c8946fb29b2789f899a0c1397aeb69 301 SUPERFAMILY SSF140453 52 100 9.55E-5 T 13-10-2018 IPR036689 ESAT-6-like superfamily RAM_20145 ca587b1bda94548c93e3a21bd0b70284 307 SUPERFAMILY SSF161098 69 292 1.31E-45 T 13-10-2018 IPR035906 MetI-like superfamily RAM_20145 ca587b1bda94548c93e3a21bd0b70284 307 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 103 293 2.5E-10 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_20145 ca587b1bda94548c93e3a21bd0b70284 307 Gene3D G3DSA:1.10.3720.10 67 306 3.2E-53 T 13-10-2018 IPR035906 MetI-like superfamily RAM_04960 b76d197e933235e78fa2925b3b72b545 196 Pfam PF03703 Bacterial PH domain 80 152 2.5E-17 T 13-10-2018 IPR005182 Domain of unknown function DUF304 RAM_31570 399221234be7cdf7d424c3fe973209b3 154 Pfam PF00436 Single-strand binding protein family 3 103 5.4E-24 T 13-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 RAM_31570 399221234be7cdf7d424c3fe973209b3 154 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 3 115 1.1E-24 T 13-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 RAM_31570 399221234be7cdf7d424c3fe973209b3 154 Gene3D G3DSA:2.40.50.140 1 140 3.4E-33 T 13-10-2018 RAM_31570 399221234be7cdf7d424c3fe973209b3 154 Hamap MF_00984 Single-stranded DNA-binding protein. 1 110 23.507 T 13-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 RAM_31570 399221234be7cdf7d424c3fe973209b3 154 SUPERFAMILY SSF50249 4 154 6.57E-36 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_36575 e4579211032b99874505773ace7891ed 501 Pfam PF00501 AMP-binding enzyme 9 406 1.0E-101 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_36575 e4579211032b99874505773ace7891ed 501 ProSitePatterns PS00455 Putative AMP-binding domain signature. 159 170 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_36575 e4579211032b99874505773ace7891ed 501 Gene3D G3DSA:3.40.50.12780 1 399 2.9E-120 T 13-10-2018 RAM_36575 e4579211032b99874505773ace7891ed 501 Gene3D G3DSA:3.30.300.310 402 501 9.7E-36 T 13-10-2018 RAM_36575 e4579211032b99874505773ace7891ed 501 Pfam PF13193 AMP-binding enzyme C-terminal domain 415 490 1.7E-24 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_36575 e4579211032b99874505773ace7891ed 501 SUPERFAMILY SSF56801 4 498 2.49E-159 T 13-10-2018 RAM_46805 b5e2a96ef32ec11942f0aebf8b8bea50 463 Pfam PF02913 FAD linked oxidases, C-terminal domain 218 458 3.4E-60 T 13-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 RAM_46805 b5e2a96ef32ec11942f0aebf8b8bea50 463 Gene3D G3DSA:3.30.465.40 5 231 3.2E-73 T 13-10-2018 RAM_46805 b5e2a96ef32ec11942f0aebf8b8bea50 463 Gene3D G3DSA:3.30.70.2740 337 419 1.0E-12 T 13-10-2018 RAM_46805 b5e2a96ef32ec11942f0aebf8b8bea50 463 SUPERFAMILY SSF56176 4 218 2.24E-76 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RAM_46805 b5e2a96ef32ec11942f0aebf8b8bea50 463 Gene3D G3DSA:1.10.45.10 420 459 2.4E-11 T 13-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 RAM_46805 b5e2a96ef32ec11942f0aebf8b8bea50 463 Pfam PF01565 FAD binding domain 42 180 3.5E-43 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RAM_46805 b5e2a96ef32ec11942f0aebf8b8bea50 463 SUPERFAMILY SSF55103 222 460 1.08E-58 T 13-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 RAM_40370 8bd8129b81e00940d8a597e4e75cbe12 328 Gene3D G3DSA:1.10.10.10 259 327 8.0E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_40370 8bd8129b81e00940d8a597e4e75cbe12 328 SUPERFAMILY SSF46785 264 323 2.08E-14 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_40370 8bd8129b81e00940d8a597e4e75cbe12 328 Pfam PF12840 Helix-turn-helix domain 260 308 5.4E-10 T 13-10-2018 RAM_40370 8bd8129b81e00940d8a597e4e75cbe12 328 SMART SM00418 258 324 5.4E-4 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_40370 8bd8129b81e00940d8a597e4e75cbe12 328 SMART SM00419 264 313 7.5E-6 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RAM_11430 7035d499a6ec7aae94d1fb92f857b586 456 TIGRFAM TIGR03920 T7SS_EccD: type VII secretion integral membrane protein EccD 12 456 6.9E-59 T 13-10-2018 IPR006707 Type VII secretion system membrane protein EccD RAM_11430 7035d499a6ec7aae94d1fb92f857b586 456 PIRSF PIRSF017804 1 456 3.9E-55 T 13-10-2018 IPR006707 Type VII secretion system membrane protein EccD RAM_11430 7035d499a6ec7aae94d1fb92f857b586 456 Pfam PF08817 WXG100 protein secretion system (Wss), protein YukD 11 84 3.7E-20 T 13-10-2018 IPR024962 YukD-like RAM_11430 7035d499a6ec7aae94d1fb92f857b586 456 Gene3D G3DSA:3.10.20.90 7 86 2.8E-9 T 13-10-2018 RAM_18435 388e7ea380a17e7bd34f4bf3440dfe6d 399 Gene3D G3DSA:1.20.140.10 243 382 1.9E-15 T 13-10-2018 RAM_18435 388e7ea380a17e7bd34f4bf3440dfe6d 399 SUPERFAMILY SSF56645 34 234 7.98E-30 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_18435 388e7ea380a17e7bd34f4bf3440dfe6d 399 Gene3D G3DSA:2.40.110.10 133 242 2.2E-26 T 13-10-2018 RAM_18435 388e7ea380a17e7bd34f4bf3440dfe6d 399 SUPERFAMILY SSF47203 241 383 6.77E-19 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_18435 388e7ea380a17e7bd34f4bf3440dfe6d 399 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 134 225 3.6E-19 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RAM_18435 388e7ea380a17e7bd34f4bf3440dfe6d 399 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 242 379 2.3E-17 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_14570 179d2b4238869b8cd12e4d4069714cdc 612 Gene3D G3DSA:3.40.50.300 345 610 1.0E-83 T 13-10-2018 RAM_14570 179d2b4238869b8cd12e4d4069714cdc 612 ProSitePatterns PS00211 ABC transporters family signature. 505 519 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_14570 179d2b4238869b8cd12e4d4069714cdc 612 SUPERFAMILY SSF52540 369 604 1.47E-83 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_14570 179d2b4238869b8cd12e4d4069714cdc 612 SMART SM00382 393 579 2.6E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_14570 179d2b4238869b8cd12e4d4069714cdc 612 Pfam PF00664 ABC transporter transmembrane region 30 300 2.8E-39 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 RAM_14570 179d2b4238869b8cd12e4d4069714cdc 612 Gene3D G3DSA:1.20.1560.10 4 334 9.9E-81 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RAM_14570 179d2b4238869b8cd12e4d4069714cdc 612 SUPERFAMILY SSF90123 16 334 1.83E-74 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RAM_14570 179d2b4238869b8cd12e4d4069714cdc 612 Pfam PF00005 ABC transporter 384 533 4.1E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_10715 94acf990bbb155cd0aa59a723518e4b0 212 Pfam PF04973 Nicotinamide mononucleotide transporter 18 196 8.0E-41 T 13-10-2018 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 RAM_25950 a66d6e015e85030720198453ffe0ea23 250 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_25950 a66d6e015e85030720198453ffe0ea23 250 Pfam PF00005 ABC transporter 21 172 3.6E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_25950 a66d6e015e85030720198453ffe0ea23 250 SMART SM00382 30 221 3.2E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_25950 a66d6e015e85030720198453ffe0ea23 250 SUPERFAMILY SSF52540 5 231 1.05E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_25950 a66d6e015e85030720198453ffe0ea23 250 Gene3D G3DSA:3.40.50.300 1 240 1.8E-56 T 13-10-2018 RAM_04015 a5560d9c6d7a108abd53633312a95a43 67 SUPERFAMILY SSF51735 4 47 2.62E-7 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_04015 a5560d9c6d7a108abd53633312a95a43 67 Gene3D G3DSA:3.40.50.720 1 54 2.1E-5 T 13-10-2018 RAM_14625 94798626a60277682c294c2d2e8e128a 152 Pfam PF00293 NUDIX domain 30 146 4.4E-15 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RAM_14625 94798626a60277682c294c2d2e8e128a 152 PRINTS PR00502 NUDIX hydrolase family signature 52 66 3.4E-7 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RAM_14625 94798626a60277682c294c2d2e8e128a 152 PRINTS PR00502 NUDIX hydrolase family signature 66 81 3.4E-7 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RAM_14625 94798626a60277682c294c2d2e8e128a 152 SUPERFAMILY SSF55811 28 149 1.02E-24 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RAM_14625 94798626a60277682c294c2d2e8e128a 152 ProSitePatterns PS00893 Nudix box signature. 57 78 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RAM_14625 94798626a60277682c294c2d2e8e128a 152 Gene3D G3DSA:3.90.79.10 20 152 1.3E-21 T 13-10-2018 RAM_16460 bb39927297197b2f5df7c2587c092695 117 SUPERFAMILY SSF54593 4 116 7.52E-22 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_16460 bb39927297197b2f5df7c2587c092695 117 Gene3D G3DSA:3.10.180.10 10 117 1.3E-20 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_32930 80080fc2366e822725d1f585ea57a742 1019 Gene3D G3DSA:3.40.50.300 273 481 1.9E-8 T 13-10-2018 RAM_32930 80080fc2366e822725d1f585ea57a742 1019 SUPERFAMILY SSF52540 274 541 3.69E-10 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_32930 80080fc2366e822725d1f585ea57a742 1019 Pfam PF13191 AAA ATPase domain 278 454 4.4E-9 T 13-10-2018 RAM_46300 412a151a01b0c272516fdfeae48146fa 532 Gene3D G3DSA:3.40.50.300 275 513 3.5E-55 T 13-10-2018 RAM_46300 412a151a01b0c272516fdfeae48146fa 532 SUPERFAMILY SSF52540 1 232 5.11E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_46300 412a151a01b0c272516fdfeae48146fa 532 Gene3D G3DSA:3.40.50.300 1 239 1.6E-63 T 13-10-2018 RAM_46300 412a151a01b0c272516fdfeae48146fa 532 SMART SM00382 310 491 2.0E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_46300 412a151a01b0c272516fdfeae48146fa 532 SMART SM00382 28 219 1.7E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_46300 412a151a01b0c272516fdfeae48146fa 532 Pfam PF00005 ABC transporter 19 170 6.2E-22 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_46300 412a151a01b0c272516fdfeae48146fa 532 Pfam PF00005 ABC transporter 302 442 3.0E-19 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_46300 412a151a01b0c272516fdfeae48146fa 532 SUPERFAMILY SSF52540 279 502 1.14E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_46300 412a151a01b0c272516fdfeae48146fa 532 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_11710 8cc084b4aafdc59270faa002c2d460b2 460 Gene3D G3DSA:3.30.590.10 123 459 8.6E-98 T 13-10-2018 RAM_11710 8cc084b4aafdc59270faa002c2d460b2 460 SUPERFAMILY SSF54368 27 125 1.7E-5 T 13-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RAM_11710 8cc084b4aafdc59270faa002c2d460b2 460 SUPERFAMILY SSF55931 126 450 2.75E-82 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 RAM_11710 8cc084b4aafdc59270faa002c2d460b2 460 Pfam PF00120 Glutamine synthetase, catalytic domain 127 444 8.6E-77 T 13-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RAM_11710 8cc084b4aafdc59270faa002c2d460b2 460 Pfam PF16952 Glutamine synthetase N-terminal domain 27 111 9.2E-9 T 13-10-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 RAM_11710 8cc084b4aafdc59270faa002c2d460b2 460 Gene3D G3DSA:3.10.20.70 27 116 3.8E-9 T 13-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RAM_11710 8cc084b4aafdc59270faa002c2d460b2 460 SMART SM01230 126 376 3.4E-76 T 13-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RAM_27910 35ac642ca1ee9af200342725bc837797 339 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 3 319 1.7E-113 T 13-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 RAM_27910 35ac642ca1ee9af200342725bc837797 339 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 3 204 2.2E-82 T 13-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 RAM_27910 35ac642ca1ee9af200342725bc837797 339 PIRSF PIRSF000267 1 333 1.7E-123 T 13-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 RAM_41190 d0e923cccef51c4ede99d862b415b0ee 154 Gene3D G3DSA:3.30.2010.20 34 153 6.2E-13 T 13-10-2018 IPR038555 Zincin-like metallopeptidase superfamily RAM_41190 d0e923cccef51c4ede99d862b415b0ee 154 Pfam PF06262 Zincin-like metallopeptidase 62 151 1.3E-10 T 13-10-2018 IPR010428 Zincin-like metallopeptidase RAM_41190 d0e923cccef51c4ede99d862b415b0ee 154 SUPERFAMILY SSF55486 35 152 1.43E-25 T 13-10-2018 RAM_15980 0aa96c12337f8a4791decd746af6558f 253 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 185 1.1E-4 T 13-10-2018 RAM_15980 0aa96c12337f8a4791decd746af6558f 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 6.4E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15980 0aa96c12337f8a4791decd746af6558f 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 6.4E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15980 0aa96c12337f8a4791decd746af6558f 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 6.4E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15980 0aa96c12337f8a4791decd746af6558f 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 235 6.4E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15980 0aa96c12337f8a4791decd746af6558f 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 6.4E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15980 0aa96c12337f8a4791decd746af6558f 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 6.4E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15980 0aa96c12337f8a4791decd746af6558f 253 SUPERFAMILY SSF51735 7 250 2.69E-78 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_15980 0aa96c12337f8a4791decd746af6558f 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_15980 0aa96c12337f8a4791decd746af6558f 253 Gene3D G3DSA:3.40.50.720 3 252 1.3E-79 T 13-10-2018 RAM_15980 0aa96c12337f8a4791decd746af6558f 253 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 250 7.2E-61 T 13-10-2018 RAM_15980 0aa96c12337f8a4791decd746af6558f 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 3.1E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15980 0aa96c12337f8a4791decd746af6558f 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 3.1E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15980 0aa96c12337f8a4791decd746af6558f 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 3.1E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_11180 d9d23dd804a0a1f73ec0c33c93f53517 319 Pfam PF12833 Helix-turn-helix domain 237 315 2.1E-22 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_11180 d9d23dd804a0a1f73ec0c33c93f53517 319 SMART SM00342 231 314 5.2E-28 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_11180 d9d23dd804a0a1f73ec0c33c93f53517 319 Gene3D G3DSA:3.40.50.880 3 206 2.8E-47 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_11180 d9d23dd804a0a1f73ec0c33c93f53517 319 Gene3D G3DSA:1.10.10.60 210 317 5.2E-29 T 13-10-2018 RAM_11180 d9d23dd804a0a1f73ec0c33c93f53517 319 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 268 310 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RAM_11180 d9d23dd804a0a1f73ec0c33c93f53517 319 Pfam PF01965 DJ-1/PfpI family 5 173 1.4E-14 T 13-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 RAM_11180 d9d23dd804a0a1f73ec0c33c93f53517 319 SUPERFAMILY SSF46689 267 317 1.34E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_11180 d9d23dd804a0a1f73ec0c33c93f53517 319 SUPERFAMILY SSF46689 214 265 3.29E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_11180 d9d23dd804a0a1f73ec0c33c93f53517 319 SUPERFAMILY SSF52317 5 194 1.86E-41 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_10310 822c2698ebb43817a0cf70681f6734b6 260 Pfam PF08242 Methyltransferase domain 41 129 9.5E-16 T 13-10-2018 IPR013217 Methyltransferase type 12 RAM_10310 822c2698ebb43817a0cf70681f6734b6 260 Gene3D G3DSA:3.40.50.150 17 195 5.9E-34 T 13-10-2018 RAM_10310 822c2698ebb43817a0cf70681f6734b6 260 SUPERFAMILY SSF53335 7 193 2.71E-33 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_25810 40dcbe57e1a0a8dc4228990697c07ebd 612 Gene3D G3DSA:2.60.40.290 506 612 6.5E-15 T 13-10-2018 IPR012291 CBM2, carbohydrate-binding domain superfamily GO:0004553|GO:0030247 RAM_25810 40dcbe57e1a0a8dc4228990697c07ebd 612 SMART SM00060 419 492 1.4E-7 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 RAM_25810 40dcbe57e1a0a8dc4228990697c07ebd 612 PRINTS PR00735 Glycosyl hydrolase family 8 signature 154 172 2.7E-11 T 13-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 RAM_25810 40dcbe57e1a0a8dc4228990697c07ebd 612 PRINTS PR00735 Glycosyl hydrolase family 8 signature 91 104 2.7E-11 T 13-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 RAM_25810 40dcbe57e1a0a8dc4228990697c07ebd 612 PRINTS PR00735 Glycosyl hydrolase family 8 signature 389 403 2.7E-11 T 13-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 RAM_25810 40dcbe57e1a0a8dc4228990697c07ebd 612 SUPERFAMILY SSF49384 507 606 5.79E-13 T 13-10-2018 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily GO:0030246 RAM_25810 40dcbe57e1a0a8dc4228990697c07ebd 612 SUPERFAMILY SSF49265 417 504 1.12E-13 T 13-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 RAM_25810 40dcbe57e1a0a8dc4228990697c07ebd 612 Gene3D G3DSA:2.60.40.10 418 503 6.7E-19 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_25810 40dcbe57e1a0a8dc4228990697c07ebd 612 Gene3D G3DSA:1.50.10.10 46 403 1.6E-83 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 RAM_25810 40dcbe57e1a0a8dc4228990697c07ebd 612 SUPERFAMILY SSF48208 41 409 2.58E-55 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_25810 40dcbe57e1a0a8dc4228990697c07ebd 612 Pfam PF00553 Cellulose binding domain 512 608 8.0E-10 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_25810 40dcbe57e1a0a8dc4228990697c07ebd 612 SMART SM00637 511 612 3.8E-4 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_25810 40dcbe57e1a0a8dc4228990697c07ebd 612 Pfam PF01270 Glycosyl hydrolases family 8 45 278 1.0E-12 T 13-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 RAM_25110 7eee5e5cae1dbf76089220d1a86df68b 653 SMART SM00327 467 649 3.0E-12 T 13-10-2018 IPR002035 von Willebrand factor, type A RAM_25110 7eee5e5cae1dbf76089220d1a86df68b 653 SUPERFAMILY SSF53300 469 642 8.9E-17 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RAM_25110 7eee5e5cae1dbf76089220d1a86df68b 653 Gene3D G3DSA:3.40.50.410 461 644 3.0E-14 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RAM_36835 1c2195c3cb89439ad5e5580f500e558b 439 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 9 131 7.9E-15 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_36835 1c2195c3cb89439ad5e5580f500e558b 439 Gene3D G3DSA:1.10.540.10 1 132 6.3E-34 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_36835 1c2195c3cb89439ad5e5580f500e558b 439 SUPERFAMILY SSF56645 2 260 8.25E-62 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_36835 1c2195c3cb89439ad5e5580f500e558b 439 Gene3D G3DSA:1.20.140.10 252 404 2.9E-34 T 13-10-2018 RAM_36835 1c2195c3cb89439ad5e5580f500e558b 439 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 247 398 4.0E-34 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_36835 1c2195c3cb89439ad5e5580f500e558b 439 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 136 212 5.4E-19 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RAM_36835 1c2195c3cb89439ad5e5580f500e558b 439 SUPERFAMILY SSF47203 246 403 8.05E-40 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_36835 1c2195c3cb89439ad5e5580f500e558b 439 Gene3D G3DSA:2.40.110.10 134 251 9.0E-33 T 13-10-2018 RAM_08550 47524ef3e44fd225b70d5419ff7a791f 614 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 511 522 - T 13-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RAM_08550 47524ef3e44fd225b70d5419ff7a791f 614 Gene3D G3DSA:3.50.30.80 423 574 2.7E-54 T 13-10-2018 RAM_08550 47524ef3e44fd225b70d5419ff7a791f 614 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 4 611 44.767 T 13-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RAM_08550 47524ef3e44fd225b70d5419ff7a791f 614 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 122 132 - T 13-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RAM_08550 47524ef3e44fd225b70d5419ff7a791f 614 SUPERFAMILY SSF52016 423 612 1.65E-59 T 13-10-2018 RAM_08550 47524ef3e44fd225b70d5419ff7a791f 614 Pfam PF00920 Dehydratase family 34 608 1.3E-213 T 13-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RAM_08550 47524ef3e44fd225b70d5419ff7a791f 614 SUPERFAMILY SSF143975 4 422 1.1E-131 T 13-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RAM_08550 47524ef3e44fd225b70d5419ff7a791f 614 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 18 611 4.4E-236 T 13-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RAM_27160 621dab615de16ba522be6b27f529e432 113 Gene3D G3DSA:3.30.60.230 17 74 6.6E-22 T 13-10-2018 RAM_27160 621dab615de16ba522be6b27f529e432 113 Pfam PF11774 Lsr2 21 87 4.2E-20 T 13-10-2018 IPR024412 Lsr2 RAM_27160 621dab615de16ba522be6b27f529e432 113 ProDom PD026347 LSR2-LIKE LSR2 ANTIGEN IMMUNE PRECURSOR RESPONSE SIGNAL PLASMID LYSYL GP61 16 65 4.0E-12 T 13-10-2018 IPR024412 Lsr2 RAM_15625 8fc210151a0eab99ad538ff43dff5a2d 314 SUPERFAMILY SSF161098 74 300 3.27E-62 T 13-10-2018 IPR035906 MetI-like superfamily RAM_15625 8fc210151a0eab99ad538ff43dff5a2d 314 Gene3D G3DSA:1.10.3720.10 70 313 5.6E-70 T 13-10-2018 IPR035906 MetI-like superfamily RAM_15625 8fc210151a0eab99ad538ff43dff5a2d 314 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 107 310 1.1E-22 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_00880 2c87b86ef92aefd0cc133f68f60db2e6 105 PIRSF PIRSF029826 1 105 2.5E-36 T 13-10-2018 IPR025984 dCTP pyrophosphatase 1 GO:0009143|GO:0047429 KEGG: 00240+3.6.1.12|Reactome: R-HSA-499943 RAM_00880 2c87b86ef92aefd0cc133f68f60db2e6 105 SUPERFAMILY SSF101386 4 105 4.71E-28 T 13-10-2018 RAM_00880 2c87b86ef92aefd0cc133f68f60db2e6 105 Pfam PF12643 MazG-like family 32 99 1.1E-7 T 13-10-2018 IPR025984 dCTP pyrophosphatase 1 GO:0009143|GO:0047429 KEGG: 00240+3.6.1.12|Reactome: R-HSA-499943 RAM_00880 2c87b86ef92aefd0cc133f68f60db2e6 105 Gene3D G3DSA:1.10.287.1080 1 104 3.5E-30 T 13-10-2018 RAM_25780 88ff9124ff8609e7f0cd305e5be9f200 531 Pfam PF00149 Calcineurin-like phosphoesterase 208 389 2.8E-13 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 RAM_25780 88ff9124ff8609e7f0cd305e5be9f200 531 SUPERFAMILY SSF56300 154 496 7.6E-45 T 13-10-2018 RAM_25780 88ff9124ff8609e7f0cd305e5be9f200 531 Pfam PF16656 Purple acid Phosphatase, N-terminal domain 57 138 7.9E-11 T 13-10-2018 IPR015914 Purple acid phosphatase, N-terminal GO:0003993|GO:0046872 RAM_25780 88ff9124ff8609e7f0cd305e5be9f200 531 SUPERFAMILY SSF49363 51 150 1.18E-14 T 13-10-2018 IPR008963 Purple acid phosphatase-like, N-terminal GO:0003993|GO:0046872 RAM_25780 88ff9124ff8609e7f0cd305e5be9f200 531 Gene3D G3DSA:2.60.40.380 56 151 3.1E-7 T 13-10-2018 IPR008963 Purple acid phosphatase-like, N-terminal GO:0003993|GO:0046872 RAM_25780 88ff9124ff8609e7f0cd305e5be9f200 531 Gene3D G3DSA:3.60.21.10 191 509 8.4E-53 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like RAM_03850 fe83436cffdf39e3f6eeb6a7e118f6f2 625 SUPERFAMILY SSF53955 20 83 1.34E-5 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily RAM_03850 fe83436cffdf39e3f6eeb6a7e118f6f2 625 Gene3D G3DSA:3.40.80.10 249 404 1.0E-41 T 13-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 RAM_03850 fe83436cffdf39e3f6eeb6a7e118f6f2 625 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 263 391 1.0E-26 T 13-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 RAM_03850 fe83436cffdf39e3f6eeb6a7e118f6f2 625 SMART SM00644 254 390 7.1E-40 T 13-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 RAM_03850 fe83436cffdf39e3f6eeb6a7e118f6f2 625 SUPERFAMILY SSF55846 244 406 1.31E-39 T 13-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 RAM_21935 148ab27e46125f3b9e5020c9aaabc453 257 ProSitePatterns PS00211 ABC transporters family signature. 129 143 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_21935 148ab27e46125f3b9e5020c9aaabc453 257 SUPERFAMILY SSF52540 2 208 5.99E-72 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_21935 148ab27e46125f3b9e5020c9aaabc453 257 Gene3D G3DSA:3.40.50.300 1 228 5.7E-65 T 13-10-2018 RAM_21935 148ab27e46125f3b9e5020c9aaabc453 257 Pfam PF00005 ABC transporter 17 157 2.2E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_21935 148ab27e46125f3b9e5020c9aaabc453 257 SMART SM00382 26 219 9.7E-18 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_35275 271da16aace3544636ec4b271e494d2f 271 Pfam PF00486 Transcriptional regulatory protein, C terminal 39 113 6.9E-13 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_35275 271da16aace3544636ec4b271e494d2f 271 SUPERFAMILY SSF46894 20 113 4.54E-16 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_35275 271da16aace3544636ec4b271e494d2f 271 SMART SM00862 35 113 8.2E-9 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_35275 271da16aace3544636ec4b271e494d2f 271 Gene3D G3DSA:1.10.10.10 11 116 6.6E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_35275 271da16aace3544636ec4b271e494d2f 271 SMART SM01043 120 265 8.5E-35 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_35275 271da16aace3544636ec4b271e494d2f 271 Pfam PF03704 Bacterial transcriptional activator domain 121 264 4.2E-38 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_35275 271da16aace3544636ec4b271e494d2f 271 SUPERFAMILY SSF48452 115 266 7.97E-34 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_35275 271da16aace3544636ec4b271e494d2f 271 Gene3D G3DSA:1.25.40.10 118 271 8.5E-42 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_05140 9ac9e627dceed14f6fe55ad63d5bdaf1 836 SUPERFAMILY SSF53448 6 233 4.34E-52 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_05140 9ac9e627dceed14f6fe55ad63d5bdaf1 836 Gene3D G3DSA:3.40.50.2000 566 749 4.1E-22 T 13-10-2018 RAM_05140 9ac9e627dceed14f6fe55ad63d5bdaf1 836 Gene3D G3DSA:3.90.550.10 2 231 2.3E-46 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_05140 9ac9e627dceed14f6fe55ad63d5bdaf1 836 SUPERFAMILY SSF53756 380 770 1.0E-25 T 13-10-2018 RAM_05140 9ac9e627dceed14f6fe55ad63d5bdaf1 836 Pfam PF00534 Glycosyl transferases group 1 574 744 8.5E-11 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 RAM_05140 9ac9e627dceed14f6fe55ad63d5bdaf1 836 Pfam PF13641 Glycosyltransferase like family 2 9 225 1.8E-22 T 13-10-2018 RAM_22395 1fcea0ab8d0e3a0a2032a46e1f411450 325 SUPERFAMILY SSF53822 36 307 2.69E-70 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_22395 1fcea0ab8d0e3a0a2032a46e1f411450 325 Gene3D G3DSA:3.40.50.2300 39 297 3.0E-98 T 13-10-2018 RAM_22395 1fcea0ab8d0e3a0a2032a46e1f411450 325 Gene3D G3DSA:3.40.50.2300 140 280 3.0E-98 T 13-10-2018 RAM_22395 1fcea0ab8d0e3a0a2032a46e1f411450 325 Pfam PF13407 Periplasmic binding protein domain 43 298 1.6E-47 T 13-10-2018 IPR025997 Periplasmic binding protein RAM_21450 55fd6a238d45cec846b01a18d2ff1125 151 Pfam PF01152 Bacterial-like globin 4 105 2.1E-10 T 13-10-2018 IPR001486 Truncated hemoglobin GO:0019825 RAM_21450 55fd6a238d45cec846b01a18d2ff1125 151 Gene3D G3DSA:1.10.490.10 2 127 2.7E-22 T 13-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 RAM_21450 55fd6a238d45cec846b01a18d2ff1125 151 SUPERFAMILY SSF46458 4 119 6.17E-17 T 13-10-2018 IPR009050 Globin-like superfamily RAM_32275 f55e5bcbaf8294f8ab7e22944bd7323d 204 TIGRFAM TIGR01755 flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 4 195 7.5E-43 T 13-10-2018 IPR010089 Flavoprotein WrbA-like GO:0003955|GO:0010181 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 RAM_32275 f55e5bcbaf8294f8ab7e22944bd7323d 204 Gene3D G3DSA:3.40.50.360 1 203 3.9E-63 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RAM_32275 f55e5bcbaf8294f8ab7e22944bd7323d 204 ProSitePatterns PS00201 Flavodoxin signature. 7 23 - T 13-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 RAM_32275 f55e5bcbaf8294f8ab7e22944bd7323d 204 SUPERFAMILY SSF52218 3 193 6.42E-49 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RAM_32275 f55e5bcbaf8294f8ab7e22944bd7323d 204 Pfam PF03358 NADPH-dependent FMN reductase 4 148 7.0E-12 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 RAM_14575 6fb6e0fc23ef41d02a77c7f7b6f9097a 386 SUPERFAMILY SSF56601 12 380 4.86E-73 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_14575 6fb6e0fc23ef41d02a77c7f7b6f9097a 386 Gene3D G3DSA:3.40.710.30 9 385 1.2E-124 T 13-10-2018 RAM_14575 6fb6e0fc23ef41d02a77c7f7b6f9097a 386 Pfam PF00144 Beta-lactamase 23 374 1.7E-66 T 13-10-2018 IPR001466 Beta-lactamase-related RAM_34150 4689974d868c56d4723570e6af012246 562 SUPERFAMILY SSF56014 169 324 4.71E-45 T 13-10-2018 RAM_34150 4689974d868c56d4723570e6af012246 562 Gene3D G3DSA:3.30.413.10 161 337 3.6E-122 T 13-10-2018 RAM_34150 4689974d868c56d4723570e6af012246 562 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 419 555 1.3E-8 T 13-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RAM_34150 4689974d868c56d4723570e6af012246 562 SUPERFAMILY SSF56014 415 557 2.88E-35 T 13-10-2018 RAM_34150 4689974d868c56d4723570e6af012246 562 SUPERFAMILY SSF55124 299 430 1.25E-18 T 13-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RAM_34150 4689974d868c56d4723570e6af012246 562 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 468 484 - T 13-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RAM_34150 4689974d868c56d4723570e6af012246 562 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 98 159 2.4E-18 T 13-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RAM_34150 4689974d868c56d4723570e6af012246 562 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 342 407 9.3E-14 T 13-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RAM_34150 4689974d868c56d4723570e6af012246 562 SUPERFAMILY SSF55124 18 168 5.89E-37 T 13-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RAM_34150 4689974d868c56d4723570e6af012246 562 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 169 321 1.3E-38 T 13-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RAM_34150 4689974d868c56d4723570e6af012246 562 Gene3D G3DSA:3.90.480.20 31 404 3.6E-122 T 13-10-2018 RAM_34150 4689974d868c56d4723570e6af012246 562 PRINTS PR00397 Sirohaem Fe-binding site signature 468 486 1.0E-9 T 13-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RAM_34150 4689974d868c56d4723570e6af012246 562 PRINTS PR00397 Sirohaem Fe-binding site signature 419 437 1.0E-9 T 13-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RAM_34150 4689974d868c56d4723570e6af012246 562 Gene3D G3DSA:3.30.413.10 416 562 2.8E-40 T 13-10-2018 RAM_26740 8404707d23e1d04f1e81b7b7d46fd242 348 SMART SM00354 2 72 4.7E-22 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_26740 8404707d23e1d04f1e81b7b7d46fd242 348 Gene3D G3DSA:3.40.50.2300 161 290 3.9E-76 T 13-10-2018 RAM_26740 8404707d23e1d04f1e81b7b7d46fd242 348 Pfam PF13377 Periplasmic binding protein-like domain 169 330 6.7E-39 T 13-10-2018 RAM_26740 8404707d23e1d04f1e81b7b7d46fd242 348 Gene3D G3DSA:3.40.50.2300 57 307 3.9E-76 T 13-10-2018 RAM_26740 8404707d23e1d04f1e81b7b7d46fd242 348 SUPERFAMILY SSF47413 2 59 6.1E-14 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_26740 8404707d23e1d04f1e81b7b7d46fd242 348 Gene3D G3DSA:1.10.260.40 1 56 1.0E-16 T 13-10-2018 RAM_26740 8404707d23e1d04f1e81b7b7d46fd242 348 SUPERFAMILY SSF53822 61 331 1.49E-73 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_26740 8404707d23e1d04f1e81b7b7d46fd242 348 ProSitePatterns PS00356 LacI-type HTH domain signature. 5 23 - T 13-10-2018 RAM_26740 8404707d23e1d04f1e81b7b7d46fd242 348 Pfam PF00356 Bacterial regulatory proteins, lacI family 4 49 5.5E-14 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_21915 6ccff177aa649066ca1ddb7173535a43 395 SUPERFAMILY SSF53187 11 376 3.49E-56 T 13-10-2018 RAM_21915 6ccff177aa649066ca1ddb7173535a43 395 PIRSF PIRSF037226 1 394 4.3E-129 T 13-10-2018 IPR017144 Peptidase M20A, amidohydrolase, predicted RAM_21915 6ccff177aa649066ca1ddb7173535a43 395 Gene3D G3DSA:3.40.630.10 24 363 2.5E-119 T 13-10-2018 RAM_21915 6ccff177aa649066ca1ddb7173535a43 395 Pfam PF07687 Peptidase dimerisation domain 171 263 1.0E-9 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain RAM_21915 6ccff177aa649066ca1ddb7173535a43 395 Pfam PF01546 Peptidase family M20/M25/M40 91 328 2.1E-6 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 RAM_21915 6ccff177aa649066ca1ddb7173535a43 395 SUPERFAMILY SSF55031 171 277 1.14E-20 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain RAM_21915 6ccff177aa649066ca1ddb7173535a43 395 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 24 349 1.3E-63 T 13-10-2018 IPR017439 Amidohydrolase GO:0016787 RAM_21915 6ccff177aa649066ca1ddb7173535a43 395 Gene3D G3DSA:3.30.70.360 168 285 2.5E-119 T 13-10-2018 RAM_37485 3d3a8c896511867c6b54643bdf25c6a2 1532 SUPERFAMILY SSF50985 2 341 6.02E-79 T 13-10-2018 IPR009091 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II RAM_37485 3d3a8c896511867c6b54643bdf25c6a2 1532 Gene3D G3DSA:2.130.10.30 1 213 2.4E-55 T 13-10-2018 IPR009091 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II RAM_37485 3d3a8c896511867c6b54643bdf25c6a2 1532 Gene3D G3DSA:2.180.10.10 864 1391 6.0E-35 T 13-10-2018 RAM_37485 3d3a8c896511867c6b54643bdf25c6a2 1532 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 799 834 4.0E-6 T 13-10-2018 IPR006530 YD repeat RAM_37485 3d3a8c896511867c6b54643bdf25c6a2 1532 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 539 570 2.3E-6 T 13-10-2018 IPR006530 YD repeat RAM_37485 3d3a8c896511867c6b54643bdf25c6a2 1532 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1042 1078 4.6E-4 T 13-10-2018 IPR006530 YD repeat RAM_37485 3d3a8c896511867c6b54643bdf25c6a2 1532 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1084 1122 0.0026 T 13-10-2018 IPR006530 YD repeat RAM_37485 3d3a8c896511867c6b54643bdf25c6a2 1532 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 551 588 3.3E-7 T 13-10-2018 IPR006530 YD repeat RAM_37485 3d3a8c896511867c6b54643bdf25c6a2 1532 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 782 816 1.4E-5 T 13-10-2018 IPR006530 YD repeat RAM_37485 3d3a8c896511867c6b54643bdf25c6a2 1532 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 874 915 3.7E-7 T 13-10-2018 IPR006530 YD repeat RAM_37485 3d3a8c896511867c6b54643bdf25c6a2 1532 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 938 975 1.6E-6 T 13-10-2018 IPR006530 YD repeat RAM_37485 3d3a8c896511867c6b54643bdf25c6a2 1532 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 1315 1391 1.5E-19 T 13-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 RAM_37485 3d3a8c896511867c6b54643bdf25c6a2 1532 Gene3D G3DSA:2.130.10.30 214 361 4.4E-27 T 13-10-2018 IPR009091 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II RAM_37485 3d3a8c896511867c6b54643bdf25c6a2 1532 PRINTS PR00633 Chromosome condensation regulator RCC1 signature 91 107 3.0E-7 T 13-10-2018 IPR000408 Regulator of chromosome condensation, RCC1 RAM_37485 3d3a8c896511867c6b54643bdf25c6a2 1532 PRINTS PR00633 Chromosome condensation regulator RCC1 signature 143 157 3.0E-7 T 13-10-2018 IPR000408 Regulator of chromosome condensation, RCC1 RAM_37485 3d3a8c896511867c6b54643bdf25c6a2 1532 PRINTS PR00633 Chromosome condensation regulator RCC1 signature 43 59 3.0E-7 T 13-10-2018 IPR000408 Regulator of chromosome condensation, RCC1 RAM_37485 3d3a8c896511867c6b54643bdf25c6a2 1532 PRINTS PR00633 Chromosome condensation regulator RCC1 signature 289 310 3.0E-7 T 13-10-2018 IPR000408 Regulator of chromosome condensation, RCC1 RAM_37485 3d3a8c896511867c6b54643bdf25c6a2 1532 Pfam PF00415 Regulator of chromosome condensation (RCC1) repeat 40 82 1.6E-7 T 13-10-2018 IPR000408 Regulator of chromosome condensation, RCC1 RAM_37485 3d3a8c896511867c6b54643bdf25c6a2 1532 Pfam PF00415 Regulator of chromosome condensation (RCC1) repeat 90 131 1.2E-6 T 13-10-2018 IPR000408 Regulator of chromosome condensation, RCC1 RAM_37485 3d3a8c896511867c6b54643bdf25c6a2 1532 Pfam PF00415 Regulator of chromosome condensation (RCC1) repeat 140 185 7.4E-8 T 13-10-2018 IPR000408 Regulator of chromosome condensation, RCC1 RAM_37485 3d3a8c896511867c6b54643bdf25c6a2 1532 Pfam PF00415 Regulator of chromosome condensation (RCC1) repeat 298 334 4.6E-6 T 13-10-2018 IPR000408 Regulator of chromosome condensation, RCC1 RAM_37485 3d3a8c896511867c6b54643bdf25c6a2 1532 Pfam PF00415 Regulator of chromosome condensation (RCC1) repeat 192 233 1.5E-5 T 13-10-2018 IPR000408 Regulator of chromosome condensation, RCC1 RAM_37485 3d3a8c896511867c6b54643bdf25c6a2 1532 Pfam PF00415 Regulator of chromosome condensation (RCC1) repeat 243 285 4.2E-7 T 13-10-2018 IPR000408 Regulator of chromosome condensation, RCC1 RAM_37485 3d3a8c896511867c6b54643bdf25c6a2 1532 Pfam PF05593 RHS Repeat 799 835 2.8E-7 T 13-10-2018 IPR031325 RHS repeat RAM_37485 3d3a8c896511867c6b54643bdf25c6a2 1532 Pfam PF05593 RHS Repeat 551 585 1.1E-10 T 13-10-2018 IPR031325 RHS repeat RAM_37485 3d3a8c896511867c6b54643bdf25c6a2 1532 Pfam PF05593 RHS Repeat 874 911 2.2E-6 T 13-10-2018 IPR031325 RHS repeat RAM_37485 3d3a8c896511867c6b54643bdf25c6a2 1532 Pfam PF05593 RHS Repeat 782 815 9.6E-7 T 13-10-2018 IPR031325 RHS repeat RAM_37485 3d3a8c896511867c6b54643bdf25c6a2 1532 Pfam PF05593 RHS Repeat 1022 1056 3.3E-10 T 13-10-2018 IPR031325 RHS repeat RAM_37485 3d3a8c896511867c6b54643bdf25c6a2 1532 Pfam PF05593 RHS Repeat 537 566 2.1E-7 T 13-10-2018 IPR031325 RHS repeat RAM_37485 3d3a8c896511867c6b54643bdf25c6a2 1532 Pfam PF05593 RHS Repeat 938 971 5.7E-7 T 13-10-2018 IPR031325 RHS repeat RAM_14695 36119fd166f7e0671c30ab3854cd2ad0 200 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 19 32 1.6E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_14695 36119fd166f7e0671c30ab3854cd2ad0 200 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 40 63 1.6E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_14695 36119fd166f7e0671c30ab3854cd2ad0 200 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 65 5.7E-14 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_14695 36119fd166f7e0671c30ab3854cd2ad0 200 SUPERFAMILY SSF46689 6 87 1.4E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_14695 36119fd166f7e0671c30ab3854cd2ad0 200 Gene3D G3DSA:1.10.357.10 5 198 8.6E-26 T 13-10-2018 RAM_22230 a9aa4436fd804ed9fbcdd978c8cd1b9c 485 PRINTS PR00133 Glycosyl hydrolase family 3 signature 91 110 2.7E-5 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_22230 a9aa4436fd804ed9fbcdd978c8cd1b9c 485 PRINTS PR00133 Glycosyl hydrolase family 3 signature 169 185 2.7E-5 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_22230 a9aa4436fd804ed9fbcdd978c8cd1b9c 485 PRINTS PR00133 Glycosyl hydrolase family 3 signature 244 262 2.7E-5 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_22230 a9aa4436fd804ed9fbcdd978c8cd1b9c 485 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 38 330 1.7E-67 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_22230 a9aa4436fd804ed9fbcdd978c8cd1b9c 485 Gene3D G3DSA:3.20.20.300 3 334 3.3E-99 T 13-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 RAM_22230 a9aa4436fd804ed9fbcdd978c8cd1b9c 485 SUPERFAMILY SSF51445 18 332 6.32E-76 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_06845 bd288cbc126d59b7bf5017a3fce8f5ac 275 Gene3D G3DSA:2.60.40.290 148 251 2.4E-5 T 13-10-2018 IPR012291 CBM2, carbohydrate-binding domain superfamily GO:0004553|GO:0030247 RAM_06845 bd288cbc126d59b7bf5017a3fce8f5ac 275 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 167 200 5.9E-8 T 13-10-2018 IPR001434 Domain of unknown function DUF11 RAM_06845 bd288cbc126d59b7bf5017a3fce8f5ac 275 Pfam PF01345 Domain of unknown function DUF11 166 231 3.5E-8 T 13-10-2018 IPR001434 Domain of unknown function DUF11 RAM_24885 2e40deb7e8cc40e1f144c7208fba14e9 341 SUPERFAMILY SSF110296 44 315 1.29E-29 T 13-10-2018 RAM_24885 2e40deb7e8cc40e1f144c7208fba14e9 341 Gene3D G3DSA:2.130.10.10 199 337 5.1E-7 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RAM_24885 2e40deb7e8cc40e1f144c7208fba14e9 341 Gene3D G3DSA:2.130.10.10 25 131 2.3E-9 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RAM_08530 f223ddb22be1045e29354a00f8b6d792 380 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 150 234 1.5E-4 T 13-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 RAM_08530 f223ddb22be1045e29354a00f8b6d792 380 Gene3D G3DSA:3.40.50.720 1 138 3.7E-28 T 13-10-2018 RAM_08530 f223ddb22be1045e29354a00f8b6d792 380 SUPERFAMILY SSF51735 50 171 1.36E-25 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_08530 f223ddb22be1045e29354a00f8b6d792 380 Gene3D G3DSA:3.30.360.10 139 378 6.0E-70 T 13-10-2018 RAM_08530 f223ddb22be1045e29354a00f8b6d792 380 SUPERFAMILY SSF55347 144 343 3.01E-32 T 13-10-2018 RAM_08530 f223ddb22be1045e29354a00f8b6d792 380 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 51 136 3.1E-5 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 RAM_46810 dc4d471444077d6cb5ab1fdddfacfde6 141 TIGRFAM TIGR03618 Rv1155_F420: PPOX class probable F420-dependent enzyme 8 137 3.6E-39 T 13-10-2018 IPR019920 F420-binding domain, putative RAM_46810 dc4d471444077d6cb5ab1fdddfacfde6 141 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 5 87 3.2E-15 T 13-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RAM_46810 dc4d471444077d6cb5ab1fdddfacfde6 141 SUPERFAMILY SSF50475 6 138 4.27E-35 T 13-10-2018 RAM_46810 dc4d471444077d6cb5ab1fdddfacfde6 141 Gene3D G3DSA:2.30.110.10 2 140 3.6E-44 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_24745 a23be2070375a39d41088eb65eb31b6d 219 Pfam PF00005 ABC transporter 20 166 2.2E-25 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_24745 a23be2070375a39d41088eb65eb31b6d 219 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_24745 a23be2070375a39d41088eb65eb31b6d 219 Gene3D G3DSA:3.40.50.300 1 217 1.9E-56 T 13-10-2018 RAM_24745 a23be2070375a39d41088eb65eb31b6d 219 SUPERFAMILY SSF52540 9 216 6.93E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_24745 a23be2070375a39d41088eb65eb31b6d 219 SMART SM00382 29 213 2.3E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_05220 47bbecf5ee377ebba22f13346761faff 106 Gene3D G3DSA:3.30.70.20 2 106 1.2E-46 T 13-10-2018 RAM_05220 47bbecf5ee377ebba22f13346761faff 106 Pfam PF00037 4Fe-4S binding domain 34 56 1.2E-8 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RAM_05220 47bbecf5ee377ebba22f13346761faff 106 SUPERFAMILY SSF54862 3 85 3.98E-21 T 13-10-2018 RAM_05220 47bbecf5ee377ebba22f13346761faff 106 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 40 51 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RAM_05220 47bbecf5ee377ebba22f13346761faff 106 PRINTS PR00354 7Fe ferredoxin signature 35 52 2.0E-16 T 13-10-2018 IPR000813 7Fe ferredoxin GO:0009055 RAM_05220 47bbecf5ee377ebba22f13346761faff 106 PRINTS PR00354 7Fe ferredoxin signature 9 19 2.0E-16 T 13-10-2018 IPR000813 7Fe ferredoxin GO:0009055 RAM_05220 47bbecf5ee377ebba22f13346761faff 106 PRINTS PR00354 7Fe ferredoxin signature 19 29 2.0E-16 T 13-10-2018 IPR000813 7Fe ferredoxin GO:0009055 RAM_08200 f5f2c53f7b91e4ac1a80e5c0aeb8445c 321 Gene3D G3DSA:3.40.50.150 9 285 2.8E-35 T 13-10-2018 RAM_08200 f5f2c53f7b91e4ac1a80e5c0aeb8445c 321 SUPERFAMILY SSF53335 37 256 1.66E-38 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_08200 f5f2c53f7b91e4ac1a80e5c0aeb8445c 321 Pfam PF08241 Methyltransferase domain 76 172 6.5E-23 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 RAM_09450 772df853dc1ef935d9044091cc6f5706 260 SUPERFAMILY SSF53474 4 258 6.79E-72 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_09450 772df853dc1ef935d9044091cc6f5706 260 PRINTS PR00111 Alpha/beta hydrolase fold signature 89 102 3.1E-10 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_09450 772df853dc1ef935d9044091cc6f5706 260 PRINTS PR00111 Alpha/beta hydrolase fold signature 202 216 3.1E-10 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_09450 772df853dc1ef935d9044091cc6f5706 260 PRINTS PR00111 Alpha/beta hydrolase fold signature 103 116 3.1E-10 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_09450 772df853dc1ef935d9044091cc6f5706 260 PRINTS PR00111 Alpha/beta hydrolase fold signature 45 60 3.1E-10 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_09450 772df853dc1ef935d9044091cc6f5706 260 TIGRFAM TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase 8 257 1.1E-90 T 13-10-2018 IPR026968 3-oxoadipate enol-lactonase 1/2 GO:0042952|GO:0047570 KEGG: 00362+3.1.1.24|MetaCyc: PWY-6185 RAM_09450 772df853dc1ef935d9044091cc6f5706 260 Pfam PF00561 alpha/beta hydrolase fold 19 245 1.7E-25 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_09450 772df853dc1ef935d9044091cc6f5706 260 Gene3D G3DSA:3.40.50.1820 2 258 3.2E-73 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_14765 e735ab2012dc751d3f2be84a3fbf279b 493 SMART SM00458 48 184 6.7E-14 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_14765 e735ab2012dc751d3f2be84a3fbf279b 493 Gene3D G3DSA:2.80.10.50 38 85 2.2E-11 T 13-10-2018 RAM_14765 e735ab2012dc751d3f2be84a3fbf279b 493 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 48 124 2.5E-21 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_14765 e735ab2012dc751d3f2be84a3fbf279b 493 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 130 194 4.0E-13 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_14765 e735ab2012dc751d3f2be84a3fbf279b 493 Pfam PF03664 Glycosyl hydrolase family 62 193 462 5.0E-146 T 13-10-2018 IPR005193 Glycoside hydrolase, family 62, arabinosidase GO:0046373|GO:0046556 KEGG: 00520+3.2.1.55 RAM_14765 e735ab2012dc751d3f2be84a3fbf279b 493 SUPERFAMILY SSF50370 44 184 7.69E-44 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_14765 e735ab2012dc751d3f2be84a3fbf279b 493 SUPERFAMILY SSF75005 212 477 3.49E-27 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily RAM_14765 e735ab2012dc751d3f2be84a3fbf279b 493 Gene3D G3DSA:2.80.10.50 86 138 1.2E-16 T 13-10-2018 RAM_14765 e735ab2012dc751d3f2be84a3fbf279b 493 Gene3D G3DSA:2.80.10.50 139 190 1.1E-11 T 13-10-2018 RAM_14765 e735ab2012dc751d3f2be84a3fbf279b 493 Gene3D G3DSA:2.115.10.20 191 493 1.2E-132 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily RAM_16490 61982be98713d7367afc5c7ce7c5d7a6 276 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 263 1.6E-16 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_16490 61982be98713d7367afc5c7ce7c5d7a6 276 SUPERFAMILY SSF161098 4 270 5.7E-62 T 13-10-2018 IPR035906 MetI-like superfamily RAM_16490 61982be98713d7367afc5c7ce7c5d7a6 276 Gene3D G3DSA:1.10.3720.10 2 261 1.2E-56 T 13-10-2018 IPR035906 MetI-like superfamily RAM_16920 2faf8842421038aef66470071c5a2fdf 331 Pfam PF00356 Bacterial regulatory proteins, lacI family 4 49 1.5E-15 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_16920 2faf8842421038aef66470071c5a2fdf 331 SUPERFAMILY SSF47413 3 60 2.95E-17 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_16920 2faf8842421038aef66470071c5a2fdf 331 SMART SM00354 2 72 2.3E-28 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_16920 2faf8842421038aef66470071c5a2fdf 331 Pfam PF13377 Periplasmic binding protein-like domain 168 331 6.6E-33 T 13-10-2018 RAM_16920 2faf8842421038aef66470071c5a2fdf 331 SUPERFAMILY SSF53822 59 325 2.17E-61 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_16920 2faf8842421038aef66470071c5a2fdf 331 Gene3D G3DSA:3.40.50.2300 61 314 4.8E-73 T 13-10-2018 RAM_16920 2faf8842421038aef66470071c5a2fdf 331 ProSitePatterns PS00356 LacI-type HTH domain signature. 5 23 - T 13-10-2018 RAM_16920 2faf8842421038aef66470071c5a2fdf 331 Gene3D G3DSA:3.40.50.2300 159 293 4.8E-73 T 13-10-2018 RAM_16920 2faf8842421038aef66470071c5a2fdf 331 Gene3D G3DSA:1.10.260.40 2 60 2.2E-21 T 13-10-2018 RAM_31345 6111089eb6b41f62c97cd877306bdc96 461 Pfam PF05576 PS-10 peptidase S37 23 456 2.3E-138 T 13-10-2018 IPR008761 Peptidase S37, tripeptidyl aminopeptidase RAM_31345 6111089eb6b41f62c97cd877306bdc96 461 Gene3D G3DSA:3.40.50.1820 50 216 3.5E-11 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_31345 6111089eb6b41f62c97cd877306bdc96 461 SUPERFAMILY SSF53474 112 413 7.51E-11 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_22500 ba6c48fb2f4873fc093644e3ec18c11d 335 SUPERFAMILY SSF50129 10 138 7.3E-30 T 13-10-2018 IPR011032 GroES-like superfamily RAM_22500 ba6c48fb2f4873fc093644e3ec18c11d 335 Gene3D G3DSA:3.90.180.10 14 332 2.8E-77 T 13-10-2018 RAM_22500 ba6c48fb2f4873fc093644e3ec18c11d 335 SUPERFAMILY SSF51735 111 260 4.06E-35 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_22500 ba6c48fb2f4873fc093644e3ec18c11d 335 Gene3D G3DSA:3.40.50.720 122 279 2.8E-77 T 13-10-2018 RAM_22500 ba6c48fb2f4873fc093644e3ec18c11d 335 Pfam PF13602 Zinc-binding dehydrogenase 181 333 4.9E-19 T 13-10-2018 RAM_22500 ba6c48fb2f4873fc093644e3ec18c11d 335 SMART SM00829 10 333 3.5E-13 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_03975 3eef568495e98a89dd0ca836548af21f 481 Gene3D G3DSA:3.40.309.10 255 444 1.2E-143 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RAM_03975 3eef568495e98a89dd0ca836548af21f 481 SUPERFAMILY SSF53720 5 476 5.11E-135 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RAM_03975 3eef568495e98a89dd0ca836548af21f 481 Pfam PF00171 Aldehyde dehydrogenase family 22 472 3.0E-133 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RAM_03975 3eef568495e98a89dd0ca836548af21f 481 Gene3D G3DSA:3.40.605.10 31 462 1.2E-143 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RAM_03975 3eef568495e98a89dd0ca836548af21f 481 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 251 258 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 RAM_30790 19885a6a3c9c8a76bc23bd5e612760f2 609 Pfam PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain 342 585 1.4E-29 T 13-10-2018 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 RAM_30790 19885a6a3c9c8a76bc23bd5e612760f2 609 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 49 315 1.9E-53 T 13-10-2018 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 RAM_30790 19885a6a3c9c8a76bc23bd5e612760f2 609 SUPERFAMILY SSF49785 382 583 2.04E-29 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_30790 19885a6a3c9c8a76bc23bd5e612760f2 609 SUPERFAMILY SSF53474 22 354 7.39E-63 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_30790 19885a6a3c9c8a76bc23bd5e612760f2 609 TIGRFAM TIGR00976 /NonD: hydrolase CocE/NonD family protein 54 219 5.1E-21 T 13-10-2018 IPR005674 CocE/Serine esterase GO:0016787 RAM_30790 19885a6a3c9c8a76bc23bd5e612760f2 609 Gene3D G3DSA:3.40.50.1820 33 258 6.8E-62 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_30790 19885a6a3c9c8a76bc23bd5e612760f2 609 SMART SM00939 330 578 1.6E-37 T 13-10-2018 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 RAM_03870 479bcd7d949a9c067e76dd76b2a0c1cb 354 PIRSF PIRSF005508 1 353 2.7E-134 T 13-10-2018 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 RAM_03870 479bcd7d949a9c067e76dd76b2a0c1cb 354 TIGRFAM TIGR00832 acr3: arsenical-resistance protein 9 337 1.6E-130 T 13-10-2018 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 RAM_03870 479bcd7d949a9c067e76dd76b2a0c1cb 354 Pfam PF01758 Sodium Bile acid symporter family 54 250 1.0E-58 T 13-10-2018 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 RAM_03870 479bcd7d949a9c067e76dd76b2a0c1cb 354 Gene3D G3DSA:1.20.1530.20 9 342 8.5E-25 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily RAM_13270 d9c3c5fb1f2b3827adfe237e2ea2a07e 218 Gene3D G3DSA:3.40.50.720 2 133 5.9E-32 T 13-10-2018 RAM_13270 d9c3c5fb1f2b3827adfe237e2ea2a07e 218 SUPERFAMILY SSF116726 133 216 1.44E-14 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RAM_13270 d9c3c5fb1f2b3827adfe237e2ea2a07e 218 Pfam PF02254 TrkA-N domain 3 118 4.5E-27 T 13-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 RAM_13270 d9c3c5fb1f2b3827adfe237e2ea2a07e 218 SUPERFAMILY SSF51735 1 144 2.08E-31 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_13270 d9c3c5fb1f2b3827adfe237e2ea2a07e 218 PRINTS PR00335 TrkA potassium uptake protein signature 19 33 5.6E-10 T 13-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 RAM_13270 d9c3c5fb1f2b3827adfe237e2ea2a07e 218 PRINTS PR00335 TrkA potassium uptake protein signature 2 16 5.6E-10 T 13-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 RAM_13270 d9c3c5fb1f2b3827adfe237e2ea2a07e 218 PRINTS PR00335 TrkA potassium uptake protein signature 72 86 5.6E-10 T 13-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 RAM_13270 d9c3c5fb1f2b3827adfe237e2ea2a07e 218 PRINTS PR00335 TrkA potassium uptake protein signature 59 69 5.6E-10 T 13-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 RAM_13270 d9c3c5fb1f2b3827adfe237e2ea2a07e 218 PRINTS PR00335 TrkA potassium uptake protein signature 48 58 5.6E-10 T 13-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 RAM_13270 d9c3c5fb1f2b3827adfe237e2ea2a07e 218 Gene3D G3DSA:3.30.70.1450 136 217 1.3E-17 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RAM_13270 d9c3c5fb1f2b3827adfe237e2ea2a07e 218 Pfam PF02080 TrkA-C domain 149 213 2.1E-14 T 13-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RAM_14530 b3e6344a6eb8a36a50319a45fac947e8 520 SMART SM00471 59 260 3.1E-12 T 13-10-2018 IPR003607 HD/PDEase domain RAM_14530 b3e6344a6eb8a36a50319a45fac947e8 520 Pfam PF01966 HD domain 63 145 6.4E-12 T 13-10-2018 IPR006674 HD domain RAM_14530 b3e6344a6eb8a36a50319a45fac947e8 520 SUPERFAMILY SSF109604 27 272 2.96E-46 T 13-10-2018 RAM_14530 b3e6344a6eb8a36a50319a45fac947e8 520 Gene3D G3DSA:1.10.3210.10 6 312 1.7E-62 T 13-10-2018 RAM_14530 b3e6344a6eb8a36a50319a45fac947e8 520 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 27 506 2.4E-60 T 13-10-2018 IPR006261 dNTP triphosphohydrolase GO:0016793 RAM_04790 ecdb3830ecabb8d5f4a5eadbb39ca8bf 517 Gene3D G3DSA:1.20.1720.10 1 195 1.2E-54 T 13-10-2018 RAM_04790 ecdb3830ecabb8d5f4a5eadbb39ca8bf 517 Pfam PF07690 Major Facilitator Superfamily 3 392 1.2E-60 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_04790 ecdb3830ecabb8d5f4a5eadbb39ca8bf 517 PRINTS PR01036 Tetracycline resistance protein TetB signature 115 139 8.3E-6 T 13-10-2018 RAM_04790 ecdb3830ecabb8d5f4a5eadbb39ca8bf 517 PRINTS PR01036 Tetracycline resistance protein TetB signature 180 198 8.3E-6 T 13-10-2018 RAM_04790 ecdb3830ecabb8d5f4a5eadbb39ca8bf 517 PRINTS PR01036 Tetracycline resistance protein TetB signature 85 105 8.3E-6 T 13-10-2018 RAM_04790 ecdb3830ecabb8d5f4a5eadbb39ca8bf 517 Gene3D G3DSA:1.20.1250.20 241 438 7.3E-28 T 13-10-2018 RAM_04790 ecdb3830ecabb8d5f4a5eadbb39ca8bf 517 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 1 411 2.7E-99 T 13-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 RAM_04790 ecdb3830ecabb8d5f4a5eadbb39ca8bf 517 SUPERFAMILY SSF103473 2 506 1.44E-76 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_14820 f4a1737fea8d4a6a45e489098025986e 406 Pfam PF01494 FAD binding domain 326 390 7.7E-10 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_14820 f4a1737fea8d4a6a45e489098025986e 406 Pfam PF01494 FAD binding domain 4 180 8.5E-12 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_14820 f4a1737fea8d4a6a45e489098025986e 406 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 339 355 1.4E-14 T 13-10-2018 RAM_14820 f4a1737fea8d4a6a45e489098025986e 406 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 324 339 1.4E-14 T 13-10-2018 RAM_14820 f4a1737fea8d4a6a45e489098025986e 406 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 1.4E-14 T 13-10-2018 RAM_14820 f4a1737fea8d4a6a45e489098025986e 406 Gene3D G3DSA:3.50.50.60 4 402 3.0E-95 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_14820 f4a1737fea8d4a6a45e489098025986e 406 SUPERFAMILY SSF51905 4 400 1.84E-44 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_03690 d4155e86cbfbb294af5f9d3b26c55064 97 TIGRFAM TIGR03930 WXG100_ESAT6: WXG100 family type VII secretion target 7 92 2.8E-22 T 13-10-2018 IPR010310 Type VII secretion system ESAT-6-like RAM_03690 d4155e86cbfbb294af5f9d3b26c55064 97 Pfam PF06013 Proteins of 100 residues with WXG 7 91 1.3E-18 T 13-10-2018 IPR010310 Type VII secretion system ESAT-6-like RAM_03690 d4155e86cbfbb294af5f9d3b26c55064 97 SUPERFAMILY SSF140453 7 97 9.02E-22 T 13-10-2018 IPR036689 ESAT-6-like superfamily RAM_03690 d4155e86cbfbb294af5f9d3b26c55064 97 Gene3D G3DSA:1.10.287.1060 6 97 6.8E-25 T 13-10-2018 RAM_06155 4c23a068333dae800acf520bba303245 175 SUPERFAMILY SSF46767 84 167 1.57E-25 T 13-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 RAM_06155 4c23a068333dae800acf520bba303245 175 SUPERFAMILY SSF53155 2 80 8.63E-11 T 13-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 RAM_06155 4c23a068333dae800acf520bba303245 175 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 134 140 - T 13-10-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 RAM_06155 4c23a068333dae800acf520bba303245 175 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 85 165 3.2E-23 T 13-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 RAM_06155 4c23a068333dae800acf520bba303245 175 Gene3D G3DSA:1.10.10.10 83 167 7.0E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_06155 4c23a068333dae800acf520bba303245 175 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 85 166 2.5E-28 T 13-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 RAM_06380 74f538f5f4b1ef17f1030c918f8cbf5c 132 Gene3D G3DSA:3.30.450.150 1 129 6.8E-23 T 13-10-2018 IPR038084 GlcG-like domain superfamily RAM_06380 74f538f5f4b1ef17f1030c918f8cbf5c 132 SUPERFAMILY SSF143744 2 126 3.66E-21 T 13-10-2018 IPR038084 GlcG-like domain superfamily RAM_06380 74f538f5f4b1ef17f1030c918f8cbf5c 132 Pfam PF03928 Haem-degrading 2 123 1.1E-15 T 13-10-2018 IPR005624 Haem-degrading RAM_35160 47f6dc3b1a2b7cfba590ad3e9dea8f76 181 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 44 83 2.4E-8 T 13-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RAM_35160 47f6dc3b1a2b7cfba590ad3e9dea8f76 181 Gene3D G3DSA:1.20.1290.10 41 163 5.6E-34 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_35160 47f6dc3b1a2b7cfba590ad3e9dea8f76 181 SUPERFAMILY SSF69118 11 159 8.78E-39 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_35160 47f6dc3b1a2b7cfba590ad3e9dea8f76 181 Pfam PF02627 Carboxymuconolactone decarboxylase family 24 96 3.2E-6 T 13-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RAM_19220 67b17c787228419afd3fa4598574dc76 213 Gene3D G3DSA:3.40.50.150 30 197 8.6E-29 T 13-10-2018 RAM_19220 67b17c787228419afd3fa4598574dc76 213 Pfam PF08241 Methyltransferase domain 51 143 4.2E-19 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 RAM_19220 67b17c787228419afd3fa4598574dc76 213 SUPERFAMILY SSF53335 40 184 2.5E-29 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_19740 4bf29b9986a388debac24a99d36c6deb 378 Gene3D G3DSA:1.10.540.10 10 126 6.6E-30 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_19740 4bf29b9986a388debac24a99d36c6deb 378 Gene3D G3DSA:2.40.110.10 128 232 5.6E-17 T 13-10-2018 RAM_19740 4bf29b9986a388debac24a99d36c6deb 378 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 228 372 4.7E-26 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_19740 4bf29b9986a388debac24a99d36c6deb 378 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 13 124 2.7E-19 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_19740 4bf29b9986a388debac24a99d36c6deb 378 SUPERFAMILY SSF47203 229 370 6.44E-34 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_19740 4bf29b9986a388debac24a99d36c6deb 378 SUPERFAMILY SSF56645 12 218 5.5E-45 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_19740 4bf29b9986a388debac24a99d36c6deb 378 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 130 203 2.0E-12 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RAM_19740 4bf29b9986a388debac24a99d36c6deb 378 Gene3D G3DSA:1.20.140.10 238 376 1.5E-34 T 13-10-2018 RAM_38080 8cd175ea7753fa6ae5a8d6f76504d4c9 125 Gene3D G3DSA:3.10.180.10 1 119 3.0E-27 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_38080 8cd175ea7753fa6ae5a8d6f76504d4c9 125 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 107 2.2E-7 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RAM_38080 8cd175ea7753fa6ae5a8d6f76504d4c9 125 SUPERFAMILY SSF54593 1 114 2.61E-19 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_20805 87455e446d4dcdcca304f69dad6ed2b4 296 SUPERFAMILY SSF46955 18 112 5.04E-15 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily RAM_20805 87455e446d4dcdcca304f69dad6ed2b4 296 SMART SM00422 18 87 3.9E-7 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_20805 87455e446d4dcdcca304f69dad6ed2b4 296 Gene3D G3DSA:1.10.1660.10 14 86 8.4E-20 T 13-10-2018 RAM_20805 87455e446d4dcdcca304f69dad6ed2b4 296 Pfam PF13411 MerR HTH family regulatory protein 20 80 4.3E-13 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_20805 87455e446d4dcdcca304f69dad6ed2b4 296 SUPERFAMILY SSF52242 179 264 8.01E-10 T 13-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 RAM_20805 87455e446d4dcdcca304f69dad6ed2b4 296 Gene3D G3DSA:1.10.1240.10 100 171 2.0E-5 T 13-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_20805 87455e446d4dcdcca304f69dad6ed2b4 296 Gene3D G3DSA:3.40.50.280 179 292 1.1E-16 T 13-10-2018 RAM_04065 e4157bdf60a041cd89a38a797eb111ff 98 Pfam PF01817 Chorismate mutase type II 26 79 1.4E-8 T 13-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 RAM_04065 e4157bdf60a041cd89a38a797eb111ff 98 SUPERFAMILY SSF48600 19 80 3.21E-12 T 13-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 RAM_04065 e4157bdf60a041cd89a38a797eb111ff 98 Gene3D G3DSA:1.20.59.10 13 98 6.4E-26 T 13-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 RAM_04065 e4157bdf60a041cd89a38a797eb111ff 98 SMART SM00830 26 88 6.2E-5 T 13-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 RAM_04065 e4157bdf60a041cd89a38a797eb111ff 98 TIGRFAM TIGR01808 CM_M_hiGC-arch: chorismate mutase 22 94 4.2E-30 T 13-10-2018 IPR010958 Chorismate mutase, high GC Gram-positive bacteria/archaeal RAM_10685 32a3694c75f18b9931596ea7d224894b 291 Gene3D G3DSA:3.30.70.250 111 174 3.0E-74 T 13-10-2018 RAM_10685 32a3694c75f18b9931596ea7d224894b 291 SUPERFAMILY SSF55048 113 162 4.05E-10 T 13-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding RAM_10685 32a3694c75f18b9931596ea7d224894b 291 Gene3D G3DSA:3.40.366.10 1 264 3.0E-74 T 13-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 RAM_10685 32a3694c75f18b9931596ea7d224894b 291 SUPERFAMILY SSF52151 1 273 1.02E-52 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RAM_10685 32a3694c75f18b9931596ea7d224894b 291 Pfam PF00698 Acyl transferase domain 20 202 2.7E-23 T 13-10-2018 IPR014043 Acyl transferase RAM_10685 32a3694c75f18b9931596ea7d224894b 291 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 6 289 4.7E-16 T 13-10-2018 IPR020801 Polyketide synthase, acyl transferase domain RAM_44830 51fb882c3d9457e1f7ffccf79c946f16 165 Gene3D G3DSA:2.40.40.20 1 123 7.8E-55 T 13-10-2018 RAM_44830 51fb882c3d9457e1f7ffccf79c946f16 165 SUPERFAMILY SSF50692 1 116 3.4E-50 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily RAM_44830 51fb882c3d9457e1f7ffccf79c946f16 165 TIGRFAM TIGR00223 panD: aspartate 1-decarboxylase 1 118 1.9E-52 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 RAM_44830 51fb882c3d9457e1f7ffccf79c946f16 165 ProDom PD009294 ASPARTATE 1-DECARBOXYLASE DECARBOXYLASE CHAIN LYASE ALPHA ALPHA- CONTAINS: PRECURSOR BETA 5 114 5.0E-40 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 RAM_44830 51fb882c3d9457e1f7ffccf79c946f16 165 Pfam PF02261 Aspartate decarboxylase 1 114 4.2E-53 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 RAM_44830 51fb882c3d9457e1f7ffccf79c946f16 165 Hamap MF_00446 Aspartate 1-decarboxylase [panD]. 1 130 76.713 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 RAM_01965 07eb651fd574fe4abcb1a278d75df9b7 234 SUPERFAMILY SSF144091 29 221 1.7E-6 T 13-10-2018 RAM_37455 9633316070db1a1fa9f08a98e3532ff2 287 Pfam PF13814 Replication-relaxation 14 192 1.9E-21 T 13-10-2018 IPR025855 Plasmid replication-relaxation RAM_02795 cf0e387b7a1b875344e48da83c3e4cb1 216 Pfam PF01522 Polysaccharide deacetylase 42 163 8.0E-20 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 RAM_02795 cf0e387b7a1b875344e48da83c3e4cb1 216 Gene3D G3DSA:3.20.20.370 2 186 1.3E-26 T 13-10-2018 RAM_02795 cf0e387b7a1b875344e48da83c3e4cb1 216 SUPERFAMILY SSF88713 39 163 5.0E-25 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RAM_38145 79639e99e16cce89f54e7eae857ef404 340 Gene3D G3DSA:3.40.50.1110 127 340 5.9E-43 T 13-10-2018 IPR036514 SGNH hydrolase superfamily RAM_38145 79639e99e16cce89f54e7eae857ef404 340 SUPERFAMILY SSF49785 29 86 6.72E-5 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_38145 79639e99e16cce89f54e7eae857ef404 340 SUPERFAMILY SSF52266 126 338 2.33E-33 T 13-10-2018 RAM_38145 79639e99e16cce89f54e7eae857ef404 340 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 133 316 2.9E-11 T 13-10-2018 IPR013830 SGNH hydrolase-type esterase domain RAM_31785 a9420ff4eaf0430c028ed66b22d6613d 226 Pfam PF00196 Bacterial regulatory proteins, luxR family 154 209 1.7E-16 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_31785 a9420ff4eaf0430c028ed66b22d6613d 226 SUPERFAMILY SSF46894 148 213 2.01E-19 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_31785 a9420ff4eaf0430c028ed66b22d6613d 226 SMART SM00448 3 118 1.3E-30 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_31785 a9420ff4eaf0430c028ed66b22d6613d 226 Gene3D G3DSA:3.40.50.12740 3 214 4.4E-66 T 13-10-2018 RAM_31785 a9420ff4eaf0430c028ed66b22d6613d 226 SMART SM00421 152 209 2.4E-22 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_31785 a9420ff4eaf0430c028ed66b22d6613d 226 ProSitePatterns PS00622 LuxR-type HTH domain signature. 169 196 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_31785 a9420ff4eaf0430c028ed66b22d6613d 226 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 155 169 1.5E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_31785 a9420ff4eaf0430c028ed66b22d6613d 226 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 185 197 1.5E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_31785 a9420ff4eaf0430c028ed66b22d6613d 226 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 169 185 1.5E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_31785 a9420ff4eaf0430c028ed66b22d6613d 226 SUPERFAMILY SSF52172 1 135 5.41E-32 T 13-10-2018 IPR011006 CheY-like superfamily RAM_31785 a9420ff4eaf0430c028ed66b22d6613d 226 Pfam PF00072 Response regulator receiver domain 5 118 4.0E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_08195 242833bda5dac8a233c1cbf0dada287f 259 SUPERFAMILY SSF52096 3 255 1.35E-80 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_08195 242833bda5dac8a233c1cbf0dada287f 259 Gene3D G3DSA:1.10.12.10 199 259 2.2E-16 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal RAM_08195 242833bda5dac8a233c1cbf0dada287f 259 Pfam PF00378 Enoyl-CoA hydratase/isomerase 9 251 3.3E-66 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RAM_08195 242833bda5dac8a233c1cbf0dada287f 259 Gene3D G3DSA:3.90.226.10 1 198 4.9E-70 T 13-10-2018 RAM_16350 b908dc155d05acf2faa9f126a494ecba 139 Pfam PF06803 Protein of unknown function (DUF1232) 67 100 2.4E-12 T 13-10-2018 IPR010652 Domain of unknown function DUF1232 MetaCyc: PWY-7511 RAM_17205 69c56bf669a0be7873848a9a948d4b3b 383 PIRSF PIRSF000429 2 383 7.7E-122 T 13-10-2018 IPR002155 Thiolase GO:0016747 RAM_17205 69c56bf669a0be7873848a9a948d4b3b 383 SUPERFAMILY SSF53901 4 260 1.59E-71 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_17205 69c56bf669a0be7873848a9a948d4b3b 383 ProSitePatterns PS00737 Thiolases signature 2. 329 345 - T 13-10-2018 IPR020613 Thiolase, conserved site GO:0016747 RAM_17205 69c56bf669a0be7873848a9a948d4b3b 383 Pfam PF00108 Thiolase, N-terminal domain 6 252 1.4E-57 T 13-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 RAM_17205 69c56bf669a0be7873848a9a948d4b3b 383 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 7 381 2.9E-125 T 13-10-2018 IPR002155 Thiolase GO:0016747 RAM_17205 69c56bf669a0be7873848a9a948d4b3b 383 Pfam PF02803 Thiolase, C-terminal domain 261 382 6.4E-42 T 13-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 RAM_17205 69c56bf669a0be7873848a9a948d4b3b 383 Gene3D G3DSA:3.40.47.10 127 379 2.9E-136 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_17205 69c56bf669a0be7873848a9a948d4b3b 383 Gene3D G3DSA:3.40.47.10 7 266 2.9E-136 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_17205 69c56bf669a0be7873848a9a948d4b3b 383 SUPERFAMILY SSF53901 261 382 1.73E-41 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_18980 f80f1fa7b4bbd72867a7b0fd0cd5fc77 143 Gene3D G3DSA:2.40.100.20 1 107 9.2E-15 T 13-10-2018 RAM_18980 f80f1fa7b4bbd72867a7b0fd0cd5fc77 143 Pfam PF04126 Cyclophilin-like 2 98 3.7E-5 T 13-10-2018 IPR025658 Cyclophilin TM1367-like domain RAM_18980 f80f1fa7b4bbd72867a7b0fd0cd5fc77 143 SUPERFAMILY SSF50891 2 99 2.39E-23 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily RAM_11460 41b79725163b338198e21a9cafab4f35 264 Gene3D G3DSA:3.60.110.10 1 264 1.8E-67 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily RAM_11460 41b79725163b338198e21a9cafab4f35 264 SUPERFAMILY SSF56317 3 261 8.63E-64 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily RAM_11460 41b79725163b338198e21a9cafab4f35 264 Pfam PF00795 Carbon-nitrogen hydrolase 3 251 7.1E-37 T 13-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 RAM_11460 41b79725163b338198e21a9cafab4f35 264 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 139 159 - T 13-10-2018 IPR001110 Uncharacterised protein family UPF0012, conserved site RAM_31725 f1f42711403894356186735dfa9ef1c1 289 SUPERFAMILY SSF46785 204 269 6.02E-9 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_31725 f1f42711403894356186735dfa9ef1c1 289 Gene3D G3DSA:1.10.10.10 212 272 8.9E-9 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_31725 f1f42711403894356186735dfa9ef1c1 289 Pfam PF12802 MarR family 215 257 2.8E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_34345 7fc48e3438aa882f23c00a9b8caff6d7 189 Pfam PF01467 Cytidylyltransferase-like 2 159 4.3E-28 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RAM_34345 7fc48e3438aa882f23c00a9b8caff6d7 189 Hamap MF_00244 Probable nicotinate-nucleotide adenylyltransferase [nadD]. 1 186 26.919 T 13-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 RAM_34345 7fc48e3438aa882f23c00a9b8caff6d7 189 SUPERFAMILY SSF52374 1 188 2.0E-51 T 13-10-2018 RAM_34345 7fc48e3438aa882f23c00a9b8caff6d7 189 Gene3D G3DSA:3.40.50.620 1 189 9.0E-61 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAM_34345 7fc48e3438aa882f23c00a9b8caff6d7 189 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 2 62 3.3E-9 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RAM_34345 7fc48e3438aa882f23c00a9b8caff6d7 189 TIGRFAM TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 1 185 7.5E-54 T 13-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 RAM_33765 56c5df6b7bf15f46b8fa306866c9f0c3 430 PRINTS PR00758 Arsenical pump membrane protein signature 219 244 3.7E-10 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 RAM_33765 56c5df6b7bf15f46b8fa306866c9f0c3 430 PRINTS PR00758 Arsenical pump membrane protein signature 103 127 3.7E-10 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 RAM_33765 56c5df6b7bf15f46b8fa306866c9f0c3 430 PRINTS PR00758 Arsenical pump membrane protein signature 398 422 3.7E-10 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 RAM_33765 56c5df6b7bf15f46b8fa306866c9f0c3 430 PRINTS PR00758 Arsenical pump membrane protein signature 365 390 3.7E-10 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 RAM_33765 56c5df6b7bf15f46b8fa306866c9f0c3 430 PRINTS PR00758 Arsenical pump membrane protein signature 276 300 3.7E-10 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 RAM_33765 56c5df6b7bf15f46b8fa306866c9f0c3 430 Pfam PF03600 Citrate transporter 14 369 2.7E-54 T 13-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 RAM_03575 ea6fcaaf5c5a660c9e661a5d7a58b73e 184 PRINTS PR00094 Adenylate kinase signature 33 47 2.2E-29 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 RAM_03575 ea6fcaaf5c5a660c9e661a5d7a58b73e 184 PRINTS PR00094 Adenylate kinase signature 130 145 2.2E-29 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 RAM_03575 ea6fcaaf5c5a660c9e661a5d7a58b73e 184 PRINTS PR00094 Adenylate kinase signature 82 98 2.2E-29 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 RAM_03575 ea6fcaaf5c5a660c9e661a5d7a58b73e 184 PRINTS PR00094 Adenylate kinase signature 5 18 2.2E-29 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 RAM_03575 ea6fcaaf5c5a660c9e661a5d7a58b73e 184 PRINTS PR00094 Adenylate kinase signature 147 161 2.2E-29 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 RAM_03575 ea6fcaaf5c5a660c9e661a5d7a58b73e 184 ProSitePatterns PS00113 Adenylate kinase signature. 82 93 - T 13-10-2018 IPR033690 Adenylate kinase, conserved site KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 RAM_03575 ea6fcaaf5c5a660c9e661a5d7a58b73e 184 Pfam PF00406 Adenylate kinase 6 157 2.2E-50 T 13-10-2018 RAM_03575 ea6fcaaf5c5a660c9e661a5d7a58b73e 184 Gene3D G3DSA:3.40.50.300 1 181 4.4E-62 T 13-10-2018 RAM_03575 ea6fcaaf5c5a660c9e661a5d7a58b73e 184 Hamap MF_00235 Adenylate kinase [adk]. 2 181 40.933 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 RAM_03575 ea6fcaaf5c5a660c9e661a5d7a58b73e 184 SUPERFAMILY SSF52540 3 180 1.34E-39 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_47295 57ffccb1b4cd6fdc5f2f9c8f0d4638aa 98 Gene3D G3DSA:3.90.180.10 1 82 4.5E-19 T 13-10-2018 RAM_47295 57ffccb1b4cd6fdc5f2f9c8f0d4638aa 98 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 24 71 2.0E-5 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_47295 57ffccb1b4cd6fdc5f2f9c8f0d4638aa 98 SUPERFAMILY SSF50129 2 70 7.15E-17 T 13-10-2018 IPR011032 GroES-like superfamily RAM_11515 80eafd41c6552260989f6bdea40ca144 141 Pfam PF09278 MerR, DNA binding 38 103 4.2E-20 T 13-10-2018 IPR015358 Transcription regulator MerR, DNA binding RAM_11515 80eafd41c6552260989f6bdea40ca144 141 SMART SM00422 1 64 1.5E-18 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_11515 80eafd41c6552260989f6bdea40ca144 141 TIGRFAM TIGR01950 SoxR: redox-sensitive transcriptional activator SoxR 1 133 1.0E-59 T 13-10-2018 IPR010211 Redox-sensitive transcriptional activator SoxR GO:0003677|GO:0006355|GO:0006979|GO:0051537 RAM_11515 80eafd41c6552260989f6bdea40ca144 141 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 31 51 1.6E-8 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_11515 80eafd41c6552260989f6bdea40ca144 141 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 8 21 1.6E-8 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_11515 80eafd41c6552260989f6bdea40ca144 141 Pfam PF00376 MerR family regulatory protein 1 33 1.1E-11 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_11515 80eafd41c6552260989f6bdea40ca144 141 Gene3D G3DSA:1.10.1660.10 1 119 5.9E-32 T 13-10-2018 RAM_11515 80eafd41c6552260989f6bdea40ca144 141 SUPERFAMILY SSF46955 1 118 4.4E-27 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily RAM_12315 c743a337366206f814eb3b2703a06c49 340 Gene3D G3DSA:1.10.540.10 1 115 2.4E-24 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_12315 c743a337366206f814eb3b2703a06c49 340 SUPERFAMILY SSF56645 1 174 7.19E-25 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_12315 c743a337366206f814eb3b2703a06c49 340 Gene3D G3DSA:2.40.110.10 116 197 3.7E-10 T 13-10-2018 RAM_12315 c743a337366206f814eb3b2703a06c49 340 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 204 330 1.4E-26 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_12315 c743a337366206f814eb3b2703a06c49 340 Gene3D G3DSA:1.20.140.10 202 338 9.5E-34 T 13-10-2018 RAM_12315 c743a337366206f814eb3b2703a06c49 340 SUPERFAMILY SSF47203 202 336 8.7E-34 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_12315 c743a337366206f814eb3b2703a06c49 340 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 21 113 1.8E-13 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_40215 1ea4e83b20c313ad598637472ca867c2 470 Gene3D G3DSA:2.80.10.50 17 146 8.3E-43 T 13-10-2018 RAM_40215 1ea4e83b20c313ad598637472ca867c2 470 SUPERFAMILY SSF75005 184 452 2.36E-21 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily RAM_40215 1ea4e83b20c313ad598637472ca867c2 470 Gene3D G3DSA:2.115.10.20 158 470 1.5E-131 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily RAM_40215 1ea4e83b20c313ad598637472ca867c2 470 Pfam PF03664 Glycosyl hydrolase family 62 157 436 4.3E-68 T 13-10-2018 IPR005193 Glycoside hydrolase, family 62, arabinosidase GO:0046373|GO:0046556 KEGG: 00520+3.2.1.55 RAM_40215 1ea4e83b20c313ad598637472ca867c2 470 SMART SM00458 21 148 2.7E-34 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_40215 1ea4e83b20c313ad598637472ca867c2 470 Pfam PF00652 Ricin-type beta-trefoil lectin domain 21 145 3.4E-31 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_40215 1ea4e83b20c313ad598637472ca867c2 470 SUPERFAMILY SSF50370 20 146 1.07E-40 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_18245 318a915c6e786c7547f8e549c21cb69a 250 SUPERFAMILY SSF55874 160 244 2.85E-7 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_18245 318a915c6e786c7547f8e549c21cb69a 250 SUPERFAMILY SSF52091 20 115 3.92E-7 T 13-10-2018 IPR036513 STAS domain superfamily RAM_18245 318a915c6e786c7547f8e549c21cb69a 250 Gene3D G3DSA:3.30.565.10 124 249 1.5E-18 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_18245 318a915c6e786c7547f8e549c21cb69a 250 Gene3D G3DSA:3.30.750.24 6 120 1.7E-9 T 13-10-2018 IPR036513 STAS domain superfamily RAM_20250 2f1844241c39cb75b0678052ab9b8be6 400 SUPERFAMILY SSF46785 14 77 9.72E-10 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_20250 2f1844241c39cb75b0678052ab9b8be6 400 Gene3D G3DSA:3.30.420.40 90 388 7.3E-89 T 13-10-2018 RAM_20250 2f1844241c39cb75b0678052ab9b8be6 400 SUPERFAMILY SSF53067 83 394 7.78E-60 T 13-10-2018 RAM_20250 2f1844241c39cb75b0678052ab9b8be6 400 Pfam PF00480 ROK family 85 392 4.5E-58 T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 RAM_20250 2f1844241c39cb75b0678052ab9b8be6 400 Gene3D G3DSA:3.30.420.40 205 378 7.3E-89 T 13-10-2018 RAM_20250 2f1844241c39cb75b0678052ab9b8be6 400 ProSitePatterns PS01125 ROK family signature. 215 242 - T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 RAM_20250 2f1844241c39cb75b0678052ab9b8be6 400 Gene3D G3DSA:1.10.10.10 4 79 5.8E-12 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_15535 0cad0ac6c5ce346a8fce99c489b67ef0 141 SMART SM00347 16 116 1.0E-20 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_15535 0cad0ac6c5ce346a8fce99c489b67ef0 141 Gene3D G3DSA:1.10.10.10 1 128 2.2E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_15535 0cad0ac6c5ce346a8fce99c489b67ef0 141 Pfam PF01047 MarR family 23 80 9.3E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_15535 0cad0ac6c5ce346a8fce99c489b67ef0 141 SUPERFAMILY SSF46785 15 131 2.59E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_08020 518a6c09b4f6ef4d03cd5b8b25ff77c5 321 SMART SM00382 49 291 3.1E-5 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_08020 518a6c09b4f6ef4d03cd5b8b25ff77c5 321 Pfam PF03308 ArgK protein 23 283 6.5E-97 T 13-10-2018 RAM_08020 518a6c09b4f6ef4d03cd5b8b25ff77c5 321 SUPERFAMILY SSF52540 5 316 6.75E-80 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_08020 518a6c09b4f6ef4d03cd5b8b25ff77c5 321 TIGRFAM TIGR00750 lao: LAO/AO transport system ATPase 17 315 2.4E-103 T 13-10-2018 IPR005129 SIMIBI class G3E GTPase, ArgK/MeaB GO:0003924|GO:0005525 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 RAM_08020 518a6c09b4f6ef4d03cd5b8b25ff77c5 321 Gene3D G3DSA:3.40.50.300 45 256 2.9E-86 T 13-10-2018 RAM_33175 c97ec408b600d6643525ec9a9d3444bf 271 SUPERFAMILY SSF53474 4 264 5.78E-52 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_33175 c97ec408b600d6643525ec9a9d3444bf 271 Pfam PF00561 alpha/beta hydrolase fold 23 252 9.0E-21 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_33175 c97ec408b600d6643525ec9a9d3444bf 271 PRINTS PR00111 Alpha/beta hydrolase fold signature 109 122 4.6E-9 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_33175 c97ec408b600d6643525ec9a9d3444bf 271 PRINTS PR00111 Alpha/beta hydrolase fold signature 95 108 4.6E-9 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_33175 c97ec408b600d6643525ec9a9d3444bf 271 PRINTS PR00111 Alpha/beta hydrolase fold signature 51 66 4.6E-9 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_33175 c97ec408b600d6643525ec9a9d3444bf 271 PRINTS PR00111 Alpha/beta hydrolase fold signature 210 224 4.6E-9 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_33175 c97ec408b600d6643525ec9a9d3444bf 271 Gene3D G3DSA:3.40.50.1820 1 267 7.3E-47 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_33175 c97ec408b600d6643525ec9a9d3444bf 271 TIGRFAM TIGR02240 PHA_depoly_arom: poly(3-hydroxyalkanoate) depolymerase 9 266 5.5E-77 T 13-10-2018 IPR011942 Poly(3-hydroxyalkanoate) depolymerase RAM_29935 df1da82ed10350957754f1290882d7eb 269 SMART SM00422 2 72 4.9E-17 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_29935 df1da82ed10350957754f1290882d7eb 269 Gene3D G3DSA:3.20.80.10 124 268 1.2E-23 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily RAM_29935 df1da82ed10350957754f1290882d7eb 269 Pfam PF13411 MerR HTH family regulatory protein 2 70 3.2E-14 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_29935 df1da82ed10350957754f1290882d7eb 269 Pfam PF06445 GyrI-like small molecule binding domain 120 267 7.1E-10 T 13-10-2018 IPR029442 GyrI-like small molecule binding domain RAM_29935 df1da82ed10350957754f1290882d7eb 269 SUPERFAMILY SSF55136 120 268 5.41E-15 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily RAM_29935 df1da82ed10350957754f1290882d7eb 269 SMART SM00871 119 269 8.1E-8 T 13-10-2018 IPR010499 Bacterial transcription activator, effector binding RAM_29935 df1da82ed10350957754f1290882d7eb 269 SUPERFAMILY SSF46955 2 104 4.76E-24 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily RAM_29935 df1da82ed10350957754f1290882d7eb 269 Gene3D G3DSA:1.10.1660.10 1 123 4.6E-24 T 13-10-2018 RAM_05880 6a35aa56938dae931992e6ba90752255 322 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 8 299 2.3E-22 T 13-10-2018 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type Reactome: R-HSA-446210 RAM_05880 6a35aa56938dae931992e6ba90752255 322 Gene3D G3DSA:3.30.420.40 114 289 8.5E-53 T 13-10-2018 RAM_05880 6a35aa56938dae931992e6ba90752255 322 SUPERFAMILY SSF53067 2 111 8.03E-12 T 13-10-2018 RAM_05880 6a35aa56938dae931992e6ba90752255 322 Gene3D G3DSA:3.30.420.40 5 299 8.5E-53 T 13-10-2018 RAM_05880 6a35aa56938dae931992e6ba90752255 322 SUPERFAMILY SSF53067 116 306 4.34E-33 T 13-10-2018 RAM_46400 660cb150038bdd1263c9dd7b83ebe578 768 Gene3D G3DSA:3.30.1330.10 60 214 8.3E-126 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily RAM_46400 660cb150038bdd1263c9dd7b83ebe578 768 Gene3D G3DSA:3.30.1330.10 417 591 1.5E-53 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily RAM_46400 660cb150038bdd1263c9dd7b83ebe578 768 Gene3D G3DSA:3.90.650.10 46 391 8.3E-126 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily RAM_46400 660cb150038bdd1263c9dd7b83ebe578 768 SUPERFAMILY SSF55326 30 213 1.5E-48 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily RAM_46400 660cb150038bdd1263c9dd7b83ebe578 768 TIGRFAM TIGR01736 FGAM_synth_II: phosphoribosylformylglycinamidine synthase II 34 765 6.6E-248 T 13-10-2018 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 RAM_46400 660cb150038bdd1263c9dd7b83ebe578 768 Pfam PF02769 AIR synthase related protein, C-terminal domain 602 739 1.2E-17 T 13-10-2018 IPR010918 PurM-like, C-terminal domain RAM_46400 660cb150038bdd1263c9dd7b83ebe578 768 Pfam PF02769 AIR synthase related protein, C-terminal domain 223 382 3.1E-32 T 13-10-2018 IPR010918 PurM-like, C-terminal domain RAM_46400 660cb150038bdd1263c9dd7b83ebe578 768 SUPERFAMILY SSF56042 222 455 7.78E-52 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily RAM_46400 660cb150038bdd1263c9dd7b83ebe578 768 Gene3D G3DSA:3.90.650.10 601 768 7.6E-36 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily RAM_46400 660cb150038bdd1263c9dd7b83ebe578 768 Hamap MF_00420 Phosphoribosylformylglycinamidine synthase subunit PurL [purL]. 1 768 302.307 T 13-10-2018 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 RAM_46400 660cb150038bdd1263c9dd7b83ebe578 768 Pfam PF00586 AIR synthase related protein, N-terminal domain 108 209 2.5E-22 T 13-10-2018 IPR016188 PurM-like, N-terminal domain RAM_46400 660cb150038bdd1263c9dd7b83ebe578 768 Pfam PF00586 AIR synthase related protein, N-terminal domain 484 588 1.7E-21 T 13-10-2018 IPR016188 PurM-like, N-terminal domain RAM_46400 660cb150038bdd1263c9dd7b83ebe578 768 PIRSF PIRSF001587 16 768 1.6E-277 T 13-10-2018 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 RAM_46400 660cb150038bdd1263c9dd7b83ebe578 768 SUPERFAMILY SSF56042 601 767 9.42E-38 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily RAM_46400 660cb150038bdd1263c9dd7b83ebe578 768 SUPERFAMILY SSF55326 425 595 9.42E-53 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily RAM_04820 25c7fab73b680904ab1cd7dcbd8339f1 545 Gene3D G3DSA:3.90.226.10 282 545 1.4E-93 T 13-10-2018 RAM_04820 25c7fab73b680904ab1cd7dcbd8339f1 545 Gene3D G3DSA:3.90.226.10 10 276 6.7E-95 T 13-10-2018 RAM_04820 25c7fab73b680904ab1cd7dcbd8339f1 545 SUPERFAMILY SSF52096 24 274 5.48E-77 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_04820 25c7fab73b680904ab1cd7dcbd8339f1 545 Pfam PF01039 Carboxyl transferase domain 46 543 1.3E-202 T 13-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 RAM_04820 25c7fab73b680904ab1cd7dcbd8339f1 545 SUPERFAMILY SSF52096 261 545 5.46E-90 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_17770 86b4e272ddc3e8244633a5b80cbaedb6 510 Gene3D G3DSA:3.40.50.12780 2 406 4.9E-102 T 13-10-2018 RAM_17770 86b4e272ddc3e8244633a5b80cbaedb6 510 Gene3D G3DSA:3.30.300.310 409 509 1.2E-29 T 13-10-2018 RAM_17770 86b4e272ddc3e8244633a5b80cbaedb6 510 Pfam PF00501 AMP-binding enzyme 11 413 3.4E-86 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_17770 86b4e272ddc3e8244633a5b80cbaedb6 510 ProSitePatterns PS00455 Putative AMP-binding domain signature. 162 173 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_17770 86b4e272ddc3e8244633a5b80cbaedb6 510 Pfam PF13193 AMP-binding enzyme C-terminal domain 422 497 2.3E-19 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_17770 86b4e272ddc3e8244633a5b80cbaedb6 510 SUPERFAMILY SSF56801 6 507 1.96E-136 T 13-10-2018 RAM_04185 b95f5aa8ccb220e7e7845141c53394a7 284 Gene3D G3DSA:3.40.50.10860 8 276 1.3E-104 T 13-10-2018 RAM_04185 b95f5aa8ccb220e7e7845141c53394a7 284 Gene3D G3DSA:3.40.50.720 6 258 1.3E-104 T 13-10-2018 RAM_04185 b95f5aa8ccb220e7e7845141c53394a7 284 SUPERFAMILY SSF53223 2 121 7.1E-37 T 13-10-2018 RAM_04185 b95f5aa8ccb220e7e7845141c53394a7 284 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 5 120 5.0E-35 T 13-10-2018 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 RAM_04185 b95f5aa8ccb220e7e7845141c53394a7 284 SUPERFAMILY SSF51735 123 280 1.31E-37 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_04185 b95f5aa8ccb220e7e7845141c53394a7 284 Hamap MF_01576 Bifunctional protein FolD [folD]. 3 282 35.168 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 RAM_04185 b95f5aa8ccb220e7e7845141c53394a7 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 109 130 2.4E-59 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 RAM_04185 b95f5aa8ccb220e7e7845141c53394a7 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 205 234 2.4E-59 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 RAM_04185 b95f5aa8ccb220e7e7845141c53394a7 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 255 273 2.4E-59 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 RAM_04185 b95f5aa8ccb220e7e7845141c53394a7 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 74 101 2.4E-59 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 RAM_04185 b95f5aa8ccb220e7e7845141c53394a7 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 154 174 2.4E-59 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 RAM_04185 b95f5aa8ccb220e7e7845141c53394a7 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 33 55 2.4E-59 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 RAM_04185 b95f5aa8ccb220e7e7845141c53394a7 284 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 124 281 2.3E-57 T 13-10-2018 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0004488 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 RAM_16285 88d6458505c75b9aaffdfff1634cd0c5 346 SUPERFAMILY SSF54862 27 271 1.57E-54 T 13-10-2018 RAM_16285 88d6458505c75b9aaffdfff1634cd0c5 346 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 198 209 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RAM_16285 88d6458505c75b9aaffdfff1634cd0c5 346 Pfam PF13247 4Fe-4S dicluster domain 158 253 1.0E-24 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RAM_16285 88d6458505c75b9aaffdfff1634cd0c5 346 PIRSF PIRSF036298 130 345 3.7E-52 T 13-10-2018 IPR014603 Formate dehydrogenase iron-sulphur subunit GO:0015944|GO:0045333|GO:0051539 RAM_16285 88d6458505c75b9aaffdfff1634cd0c5 346 PIRSF PIRSF036298 17 92 2.8E-12 T 13-10-2018 IPR014603 Formate dehydrogenase iron-sulphur subunit GO:0015944|GO:0045333|GO:0051539 RAM_16285 88d6458505c75b9aaffdfff1634cd0c5 346 Gene3D G3DSA:3.30.70.20 21 284 1.6E-61 T 13-10-2018 RAM_44960 b7abad12e39f9475773bdd0def9371e3 195 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 67 6.4E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_44960 b7abad12e39f9475773bdd0def9371e3 195 SUPERFAMILY SSF48498 89 183 1.27E-9 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_44960 b7abad12e39f9475773bdd0def9371e3 195 Pfam PF13977 BetI-type transcriptional repressor, C-terminal 90 181 3.5E-6 T 13-10-2018 IPR039538 BetI-type transcriptional repressor, C-terminal RAM_44960 b7abad12e39f9475773bdd0def9371e3 195 Gene3D G3DSA:1.10.357.10 12 190 1.9E-25 T 13-10-2018 RAM_44960 b7abad12e39f9475773bdd0def9371e3 195 SUPERFAMILY SSF46689 13 94 2.0E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_22235 13772fac1ace558be7e3170a517bdba3 1052 Pfam PF00515 Tetratricopeptide repeat 871 902 1.9E-8 T 13-10-2018 IPR001440 Tetratricopeptide repeat 1 GO:0005515 RAM_22235 13772fac1ace558be7e3170a517bdba3 1052 Pfam PF00515 Tetratricopeptide repeat 736 766 5.2E-7 T 13-10-2018 IPR001440 Tetratricopeptide repeat 1 GO:0005515 RAM_22235 13772fac1ace558be7e3170a517bdba3 1052 Gene3D G3DSA:1.25.40.10 734 769 3.6E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_22235 13772fac1ace558be7e3170a517bdba3 1052 Gene3D G3DSA:1.25.40.10 770 870 1.9E-22 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_22235 13772fac1ace558be7e3170a517bdba3 1052 Gene3D G3DSA:1.25.40.10 871 1032 1.0E-19 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_22235 13772fac1ace558be7e3170a517bdba3 1052 Pfam PF13191 AAA ATPase domain 20 230 9.1E-11 T 13-10-2018 RAM_22235 13772fac1ace558be7e3170a517bdba3 1052 Pfam PF13432 Tetratricopeptide repeat 535 598 1.3E-6 T 13-10-2018 RAM_22235 13772fac1ace558be7e3170a517bdba3 1052 Pfam PF13432 Tetratricopeptide repeat 604 665 1.4E-8 T 13-10-2018 RAM_22235 13772fac1ace558be7e3170a517bdba3 1052 Pfam PF13432 Tetratricopeptide repeat 679 733 4.6E-4 T 13-10-2018 RAM_22235 13772fac1ace558be7e3170a517bdba3 1052 SUPERFAMILY SSF48452 538 869 4.36E-47 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_22235 13772fac1ace558be7e3170a517bdba3 1052 Pfam PF13181 Tetratricopeptide repeat 772 800 0.11 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_22235 13772fac1ace558be7e3170a517bdba3 1052 SUPERFAMILY SSF48452 833 1012 5.61E-26 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_22235 13772fac1ace558be7e3170a517bdba3 1052 SUPERFAMILY SSF52540 20 314 2.72E-9 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_22235 13772fac1ace558be7e3170a517bdba3 1052 SMART SM00028 768 801 0.031 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_22235 13772fac1ace558be7e3170a517bdba3 1052 SMART SM00028 836 869 20.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_22235 13772fac1ace558be7e3170a517bdba3 1052 SMART SM00028 598 631 0.0099 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_22235 13772fac1ace558be7e3170a517bdba3 1052 SMART SM00028 870 903 4.7E-7 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_22235 13772fac1ace558be7e3170a517bdba3 1052 SMART SM00028 700 733 0.026 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_22235 13772fac1ace558be7e3170a517bdba3 1052 SMART SM00028 904 937 9.8 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_22235 13772fac1ace558be7e3170a517bdba3 1052 SMART SM00028 564 597 1.3 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_22235 13772fac1ace558be7e3170a517bdba3 1052 SMART SM00028 938 970 290.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_22235 13772fac1ace558be7e3170a517bdba3 1052 SMART SM00028 530 563 0.0023 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_22235 13772fac1ace558be7e3170a517bdba3 1052 SMART SM00028 734 767 2.8E-6 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_22235 13772fac1ace558be7e3170a517bdba3 1052 SMART SM00028 802 835 0.13 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_22235 13772fac1ace558be7e3170a517bdba3 1052 SMART SM00028 632 665 1.2E-5 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_22235 13772fac1ace558be7e3170a517bdba3 1052 SMART SM00028 666 699 38.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_22235 13772fac1ace558be7e3170a517bdba3 1052 Gene3D G3DSA:1.25.40.10 634 733 9.7E-23 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_22235 13772fac1ace558be7e3170a517bdba3 1052 Pfam PF14559 Tetratricopeptide repeat 815 868 3.1E-6 T 13-10-2018 RAM_22235 13772fac1ace558be7e3170a517bdba3 1052 Gene3D G3DSA:1.25.40.10 518 633 1.3E-22 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_10710 84e8339995cff8f82767db1d65a1a06d 244 Pfam PF05552 Conserved TM helix 87 132 2.4E-10 T 13-10-2018 IPR008910 Conserved TM helix RAM_10710 84e8339995cff8f82767db1d65a1a06d 244 Pfam PF05552 Conserved TM helix 2 39 1.1E-10 T 13-10-2018 IPR008910 Conserved TM helix RAM_06745 3b7f57e0f2c3374ab734e7ab9a0f236a 242 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 237 2.4E-35 T 13-10-2018 RAM_06745 3b7f57e0f2c3374ab734e7ab9a0f236a 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 4.4E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_06745 3b7f57e0f2c3374ab734e7ab9a0f236a 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 72 83 4.4E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_06745 3b7f57e0f2c3374ab734e7ab9a0f236a 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 166 4.4E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_06745 3b7f57e0f2c3374ab734e7ab9a0f236a 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 184 4.4E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_06745 3b7f57e0f2c3374ab734e7ab9a0f236a 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 202 222 4.4E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_06745 3b7f57e0f2c3374ab734e7ab9a0f236a 242 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 72 83 1.1E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_06745 3b7f57e0f2c3374ab734e7ab9a0f236a 242 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 166 1.1E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_06745 3b7f57e0f2c3374ab734e7ab9a0f236a 242 Gene3D G3DSA:3.40.50.720 2 241 5.0E-52 T 13-10-2018 RAM_06745 3b7f57e0f2c3374ab734e7ab9a0f236a 242 SUPERFAMILY SSF51735 4 238 5.55E-49 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_47040 a1f5f85a5ee2c58eaeda317131b3cf2d 187 SUPERFAMILY SSF46689 9 85 2.05E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_47040 a1f5f85a5ee2c58eaeda317131b3cf2d 187 Gene3D G3DSA:1.10.357.10 4 185 7.4E-44 T 13-10-2018 RAM_47040 a1f5f85a5ee2c58eaeda317131b3cf2d 187 SUPERFAMILY SSF48498 93 184 6.35E-7 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_47040 a1f5f85a5ee2c58eaeda317131b3cf2d 187 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 65 2.9E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_45220 edb69ba9e7337e207725c373f31d40de 363 Pfam PF03824 High-affinity nickel-transport protein 57 345 1.0E-85 T 13-10-2018 IPR011541 Nickel/cobalt transporter, high-affinity GO:0015099|GO:0016021|GO:0035444|GO:0046872 RAM_45220 edb69ba9e7337e207725c373f31d40de 363 TIGRFAM TIGR00802 nico: transition metal uptake transporter, Ni2+-Co2+ transporter (NiCoT) family 60 341 6.3E-116 T 13-10-2018 IPR004688 Transition metal uptake transporter nickel/cobalt GO:0015099|GO:0016021|GO:0035444|GO:0046872 RAM_12060 a38639aa621731b347157ef6385e6227 441 SMART SM00915 312 440 7.1E-12 T 13-10-2018 IPR001229 Jacalin-like lectin domain RAM_12060 a38639aa621731b347157ef6385e6227 441 Pfam PF01419 Jacalin-like lectin domain 351 438 1.9E-6 T 13-10-2018 IPR001229 Jacalin-like lectin domain RAM_12060 a38639aa621731b347157ef6385e6227 441 Gene3D G3DSA:3.60.10.10 27 294 4.5E-31 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily RAM_12060 a38639aa621731b347157ef6385e6227 441 SUPERFAMILY SSF51101 304 438 1.44E-24 T 13-10-2018 IPR036404 Jacalin-like lectin domain superfamily RAM_12060 a38639aa621731b347157ef6385e6227 441 Gene3D G3DSA:2.100.10.30 303 441 3.7E-20 T 13-10-2018 IPR036404 Jacalin-like lectin domain superfamily RAM_12060 a38639aa621731b347157ef6385e6227 441 SUPERFAMILY SSF56219 30 293 1.83E-40 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily RAM_13370 b787d33ecc492a007ec94a484e09b029 396 PIRSF PIRSF000429 1 391 1.2E-119 T 13-10-2018 IPR002155 Thiolase GO:0016747 RAM_13370 b787d33ecc492a007ec94a484e09b029 396 Gene3D G3DSA:3.40.47.10 133 382 4.7E-121 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_13370 b787d33ecc492a007ec94a484e09b029 396 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 7 388 3.4E-124 T 13-10-2018 IPR002155 Thiolase GO:0016747 RAM_13370 b787d33ecc492a007ec94a484e09b029 396 ProSitePatterns PS00737 Thiolases signature 2. 335 351 - T 13-10-2018 IPR020613 Thiolase, conserved site GO:0016747 RAM_13370 b787d33ecc492a007ec94a484e09b029 396 SUPERFAMILY SSF53901 4 264 5.21E-58 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_13370 b787d33ecc492a007ec94a484e09b029 396 Pfam PF00108 Thiolase, N-terminal domain 4 256 5.1E-55 T 13-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 RAM_13370 b787d33ecc492a007ec94a484e09b029 396 SUPERFAMILY SSF53901 268 388 8.14E-38 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_13370 b787d33ecc492a007ec94a484e09b029 396 Gene3D G3DSA:3.40.47.10 5 270 4.7E-121 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_13370 b787d33ecc492a007ec94a484e09b029 396 Pfam PF02803 Thiolase, C-terminal domain 267 388 2.7E-36 T 13-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 RAM_01350 63410c105d8735bc30db7001c180f54b 497 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 317 489 4.6E-24 T 13-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 RAM_01350 63410c105d8735bc30db7001c180f54b 497 SUPERFAMILY SSF158472 237 286 1.57E-7 T 13-10-2018 RAM_01350 63410c105d8735bc30db7001c180f54b 497 Gene3D G3DSA:3.30.70.1230 308 495 1.0E-45 T 13-10-2018 IPR029787 Nucleotide cyclase RAM_01350 63410c105d8735bc30db7001c180f54b 497 Gene3D G3DSA:1.20.1480.50 210 293 2.5E-8 T 13-10-2018 RAM_01350 63410c105d8735bc30db7001c180f54b 497 SMART SM00304 237 289 3.0E-11 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_01350 63410c105d8735bc30db7001c180f54b 497 Pfam PF00672 HAMP domain 237 285 2.7E-7 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_01350 63410c105d8735bc30db7001c180f54b 497 SUPERFAMILY SSF55073 313 493 8.95E-44 T 13-10-2018 IPR029787 Nucleotide cyclase RAM_01350 63410c105d8735bc30db7001c180f54b 497 SMART SM00044 285 474 4.4E-9 T 13-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 RAM_13300 5305051f5fe0f085e9e4fc11fa8cb837 635 ProSitePatterns PS00801 Transketolase signature 1. 27 46 - T 13-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 RAM_13300 5305051f5fe0f085e9e4fc11fa8cb837 635 Pfam PF02780 Transketolase, C-terminal domain 495 609 2.1E-23 T 13-10-2018 IPR033248 Transketolase, C-terminal domain RAM_13300 5305051f5fe0f085e9e4fc11fa8cb837 635 SUPERFAMILY SSF52922 484 616 8.11E-25 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RAM_13300 5305051f5fe0f085e9e4fc11fa8cb837 635 Pfam PF02779 Transketolase, pyrimidine binding domain 312 475 1.6E-39 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain RAM_13300 5305051f5fe0f085e9e4fc11fa8cb837 635 SUPERFAMILY SSF52518 2 342 1.46E-65 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_13300 5305051f5fe0f085e9e4fc11fa8cb837 635 ProSitePatterns PS00802 Transketolase signature 2. 419 435 - T 13-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 RAM_13300 5305051f5fe0f085e9e4fc11fa8cb837 635 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 1 618 40.473 T 13-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 RAM_13300 5305051f5fe0f085e9e4fc11fa8cb837 635 Gene3D G3DSA:3.40.50.970 311 483 1.4E-59 T 13-10-2018 RAM_13300 5305051f5fe0f085e9e4fc11fa8cb837 635 Gene3D G3DSA:3.40.50.920 486 626 3.1E-26 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RAM_13300 5305051f5fe0f085e9e4fc11fa8cb837 635 SMART SM00861 313 477 4.9E-59 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain RAM_13300 5305051f5fe0f085e9e4fc11fa8cb837 635 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 4 616 8.8E-181 T 13-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 RAM_13300 5305051f5fe0f085e9e4fc11fa8cb837 635 SUPERFAMILY SSF52518 292 475 5.61E-56 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_13300 5305051f5fe0f085e9e4fc11fa8cb837 635 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 2 278 2.3E-102 T 13-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 RAM_26365 bc72b06c180ec30026d7ecc8ab8a6aaf 383 Gene3D G3DSA:3.50.50.60 8 329 2.5E-59 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_26365 bc72b06c180ec30026d7ecc8ab8a6aaf 383 Gene3D G3DSA:3.30.9.50 41 261 2.5E-59 T 13-10-2018 RAM_26365 bc72b06c180ec30026d7ecc8ab8a6aaf 383 SUPERFAMILY SSF51905 5 336 1.17E-43 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_26365 bc72b06c180ec30026d7ecc8ab8a6aaf 383 Pfam PF01494 FAD binding domain 5 307 3.0E-16 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_26365 bc72b06c180ec30026d7ecc8ab8a6aaf 383 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 2.3E-10 T 13-10-2018 RAM_26365 bc72b06c180ec30026d7ecc8ab8a6aaf 383 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 143 158 2.3E-10 T 13-10-2018 RAM_26365 bc72b06c180ec30026d7ecc8ab8a6aaf 383 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 271 286 2.3E-10 T 13-10-2018 RAM_30920 bc78a161cd0c7fb84d152117063c95ba 321 Gene3D G3DSA:3.40.50.1000 77 188 4.6E-78 T 13-10-2018 IPR023214 HAD superfamily RAM_30920 bc78a161cd0c7fb84d152117063c95ba 321 TIGRFAM TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA 12 235 2.4E-36 T 13-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA RAM_30920 bc78a161cd0c7fb84d152117063c95ba 321 PIRSF PIRSF000915 1 267 1.5E-63 T 13-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA RAM_30920 bc78a161cd0c7fb84d152117063c95ba 321 Gene3D G3DSA:3.40.50.1000 10 239 4.6E-78 T 13-10-2018 IPR023214 HAD superfamily RAM_30920 bc78a161cd0c7fb84d152117063c95ba 321 SUPERFAMILY SSF56784 9 261 2.97E-58 T 13-10-2018 IPR036412 HAD-like superfamily RAM_30920 bc78a161cd0c7fb84d152117063c95ba 321 Pfam PF13242 HAD-hyrolase-like 188 260 1.0E-16 T 13-10-2018 RAM_30920 bc78a161cd0c7fb84d152117063c95ba 321 Pfam PF13344 Haloacid dehalogenase-like hydrolase 12 112 3.9E-25 T 13-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA RAM_35575 2f967449f47ca01d480bc8444ebcfd9b 449 Gene3D G3DSA:3.50.50.60 2 315 1.2E-105 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_35575 2f967449f47ca01d480bc8444ebcfd9b 449 Gene3D G3DSA:3.30.390.30 329 449 9.0E-43 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RAM_35575 2f967449f47ca01d480bc8444ebcfd9b 449 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 123 132 6.2E-47 T 13-10-2018 RAM_35575 2f967449f47ca01d480bc8444ebcfd9b 449 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 290 297 6.2E-47 T 13-10-2018 RAM_35575 2f967449f47ca01d480bc8444ebcfd9b 449 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 25 40 6.2E-47 T 13-10-2018 RAM_35575 2f967449f47ca01d480bc8444ebcfd9b 449 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 158 183 6.2E-47 T 13-10-2018 RAM_35575 2f967449f47ca01d480bc8444ebcfd9b 449 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 247 261 6.2E-47 T 13-10-2018 RAM_35575 2f967449f47ca01d480bc8444ebcfd9b 449 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 413 433 6.2E-47 T 13-10-2018 RAM_35575 2f967449f47ca01d480bc8444ebcfd9b 449 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 391 406 6.2E-47 T 13-10-2018 RAM_35575 2f967449f47ca01d480bc8444ebcfd9b 449 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 326 347 6.2E-47 T 13-10-2018 RAM_35575 2f967449f47ca01d480bc8444ebcfd9b 449 Gene3D G3DSA:3.50.50.60 132 253 1.2E-105 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_35575 2f967449f47ca01d480bc8444ebcfd9b 449 SUPERFAMILY SSF55424 326 448 2.41E-36 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RAM_35575 2f967449f47ca01d480bc8444ebcfd9b 449 PIRSF PIRSF000350 1 445 1.9E-74 T 13-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 RAM_35575 2f967449f47ca01d480bc8444ebcfd9b 449 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 2 310 5.7E-59 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAM_35575 2f967449f47ca01d480bc8444ebcfd9b 449 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 330 438 1.1E-32 T 13-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RAM_35575 2f967449f47ca01d480bc8444ebcfd9b 449 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 26 36 - T 13-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 RAM_35575 2f967449f47ca01d480bc8444ebcfd9b 449 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 2 449 1.8E-154 T 13-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 RAM_35575 2f967449f47ca01d480bc8444ebcfd9b 449 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 1.3E-22 T 13-10-2018 RAM_35575 2f967449f47ca01d480bc8444ebcfd9b 449 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 120 138 1.3E-22 T 13-10-2018 RAM_35575 2f967449f47ca01d480bc8444ebcfd9b 449 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 158 176 1.3E-22 T 13-10-2018 RAM_35575 2f967449f47ca01d480bc8444ebcfd9b 449 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 275 297 1.3E-22 T 13-10-2018 RAM_35575 2f967449f47ca01d480bc8444ebcfd9b 449 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 246 262 1.3E-22 T 13-10-2018 RAM_35575 2f967449f47ca01d480bc8444ebcfd9b 449 SUPERFAMILY SSF51905 2 319 4.68E-53 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_28655 5e62b44b2456e09e4cc9bd2d3ce68f3d 132 SUPERFAMILY SSF54909 6 92 1.18E-22 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_28655 5e62b44b2456e09e4cc9bd2d3ce68f3d 132 Gene3D G3DSA:3.30.70.1060 1 95 1.7E-30 T 13-10-2018 RAM_28655 5e62b44b2456e09e4cc9bd2d3ce68f3d 132 Pfam PF03795 YCII-related domain 6 77 2.2E-12 T 13-10-2018 IPR005545 YCII-related RAM_36015 d6e84cde984c72873acb366288d402ed 169 SUPERFAMILY SSF46785 4 164 6.98E-32 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_36015 d6e84cde984c72873acb366288d402ed 169 Gene3D G3DSA:1.10.10.10 2 85 3.3E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_36015 d6e84cde984c72873acb366288d402ed 169 Pfam PF03551 Transcriptional regulator PadR-like family 7 78 1.1E-16 T 13-10-2018 IPR005149 Transcription regulator PadR, N-terminal RAM_35515 4558abdb64a68a5a78a484d626da367e 235 Pfam PF13471 Transglutaminase-like superfamily 123 221 1.0E-19 T 13-10-2018 IPR032708 Microcin J25-processing protein McjB, C-terminal RAM_35515 4558abdb64a68a5a78a484d626da367e 235 Pfam PF05402 Coenzyme PQQ synthesis protein D (PqqD) 20 86 7.1E-11 T 13-10-2018 IPR008792 Coenzyme PQQ synthesis D RAM_40485 7606c2b470e88cfad9c899c624c55bcd 418 Gene3D G3DSA:3.40.640.10 48 311 5.6E-150 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_40485 7606c2b470e88cfad9c899c624c55bcd 418 Pfam PF00202 Aminotransferase class-III 12 408 5.9E-119 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RAM_40485 7606c2b470e88cfad9c899c624c55bcd 418 SUPERFAMILY SSF53383 10 412 4.22E-129 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_40485 7606c2b470e88cfad9c899c624c55bcd 418 PIRSF PIRSF000521 109 415 2.3E-43 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RAM_40485 7606c2b470e88cfad9c899c624c55bcd 418 PIRSF PIRSF000521 7 118 8.4E-8 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RAM_40485 7606c2b470e88cfad9c899c624c55bcd 418 Gene3D G3DSA:3.90.1150.10 8 407 5.6E-150 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_40485 7606c2b470e88cfad9c899c624c55bcd 418 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 229 266 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RAM_28855 9f05ed0ea7f014be5bc416730105d025 195 SUPERFAMILY SSF48498 76 180 3.74E-12 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_28855 9f05ed0ea7f014be5bc416730105d025 195 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 2.1E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_28855 9f05ed0ea7f014be5bc416730105d025 195 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 2.1E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_28855 9f05ed0ea7f014be5bc416730105d025 195 SUPERFAMILY SSF46689 5 69 3.79E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_28855 9f05ed0ea7f014be5bc416730105d025 195 Gene3D G3DSA:1.10.357.10 2 184 6.2E-50 T 13-10-2018 RAM_28855 9f05ed0ea7f014be5bc416730105d025 195 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 57 8.7E-14 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_06565 54e16d90e8fcf84fb1bbc676158ec712 163 SUPERFAMILY SSF109854 2 154 6.41E-30 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_06565 54e16d90e8fcf84fb1bbc676158ec712 163 Pfam PF04978 Protein of unknown function (DUF664) 8 155 1.5E-37 T 13-10-2018 IPR007061 Protein of unknown function DUF664 RAM_06565 54e16d90e8fcf84fb1bbc676158ec712 163 Gene3D G3DSA:1.20.120.450 1 156 1.6E-29 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_22965 4d9ab29d1405a682756a7d1c4acfa34b 323 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 107 311 6.4E-16 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_22965 4d9ab29d1405a682756a7d1c4acfa34b 323 SUPERFAMILY SSF161098 76 304 7.33E-59 T 13-10-2018 IPR035906 MetI-like superfamily RAM_22965 4d9ab29d1405a682756a7d1c4acfa34b 323 Gene3D G3DSA:1.10.3720.10 72 315 1.1E-67 T 13-10-2018 IPR035906 MetI-like superfamily RAM_24405 1b615c909ea95d8ae9b14c3d12bb6959 589 SMART SM00823 Phosphopantetheine attachment site 512 581 1.3E-10 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_24405 1b615c909ea95d8ae9b14c3d12bb6959 589 Pfam PF00550 Phosphopantetheine attachment site 514 577 1.6E-14 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_24405 1b615c909ea95d8ae9b14c3d12bb6959 589 SUPERFAMILY SSF47336 505 578 1.06E-21 T 13-10-2018 IPR036736 ACP-like superfamily RAM_24405 1b615c909ea95d8ae9b14c3d12bb6959 589 Gene3D G3DSA:3.30.300.30 396 500 4.3E-31 T 13-10-2018 RAM_24405 1b615c909ea95d8ae9b14c3d12bb6959 589 ProSitePatterns PS00455 Putative AMP-binding domain signature. 141 152 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_24405 1b615c909ea95d8ae9b14c3d12bb6959 589 Gene3D G3DSA:1.10.1200.10 501 580 6.1E-27 T 13-10-2018 IPR036736 ACP-like superfamily RAM_24405 1b615c909ea95d8ae9b14c3d12bb6959 589 ProSitePatterns PS00012 Phosphopantetheine attachment site. 536 551 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_24405 1b615c909ea95d8ae9b14c3d12bb6959 589 Pfam PF00501 AMP-binding enzyme 7 402 1.5E-86 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_24405 1b615c909ea95d8ae9b14c3d12bb6959 589 Pfam PF13193 AMP-binding enzyme C-terminal domain 410 483 9.4E-16 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_24405 1b615c909ea95d8ae9b14c3d12bb6959 589 SUPERFAMILY SSF56801 3 525 1.44E-142 T 13-10-2018 RAM_24405 1b615c909ea95d8ae9b14c3d12bb6959 589 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 26 426 4.1E-113 T 13-10-2018 IPR010071 Amino acid adenylation domain RAM_24405 1b615c909ea95d8ae9b14c3d12bb6959 589 Gene3D G3DSA:3.40.50.12780 1 395 2.2E-117 T 13-10-2018 RAM_08080 80fc5d28ec732c4f50a29ea2f39244b9 331 Pfam PF13407 Periplasmic binding protein domain 46 301 2.5E-46 T 13-10-2018 IPR025997 Periplasmic binding protein RAM_08080 80fc5d28ec732c4f50a29ea2f39244b9 331 SUPERFAMILY SSF53822 43 323 5.97E-55 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_08080 80fc5d28ec732c4f50a29ea2f39244b9 331 Gene3D G3DSA:3.40.50.2300 54 310 1.6E-63 T 13-10-2018 RAM_08080 80fc5d28ec732c4f50a29ea2f39244b9 331 Gene3D G3DSA:3.40.50.2300 147 317 1.6E-63 T 13-10-2018 RAM_16030 a3c3d396f41aed3f6101725ae9deefca 219 Gene3D G3DSA:3.40.50.12740 9 214 3.2E-58 T 13-10-2018 RAM_16030 a3c3d396f41aed3f6101725ae9deefca 219 SMART SM00448 9 122 2.3E-21 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_16030 a3c3d396f41aed3f6101725ae9deefca 219 Pfam PF00196 Bacterial regulatory proteins, luxR family 153 207 4.9E-19 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_16030 a3c3d396f41aed3f6101725ae9deefca 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 154 168 1.1E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_16030 a3c3d396f41aed3f6101725ae9deefca 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 168 184 1.1E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_16030 a3c3d396f41aed3f6101725ae9deefca 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 184 196 1.1E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_16030 a3c3d396f41aed3f6101725ae9deefca 219 SMART SM00421 151 208 3.8E-24 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_16030 a3c3d396f41aed3f6101725ae9deefca 219 SUPERFAMILY SSF52172 8 127 1.1E-27 T 13-10-2018 IPR011006 CheY-like superfamily RAM_16030 a3c3d396f41aed3f6101725ae9deefca 219 SUPERFAMILY SSF46894 137 214 6.8E-21 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_16030 a3c3d396f41aed3f6101725ae9deefca 219 Pfam PF00072 Response regulator receiver domain 11 123 1.6E-23 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_38610 414c797d36e3c291fc3b0358f33e9360 377 Pfam PF01979 Amidohydrolase family 183 370 2.7E-12 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RAM_38610 414c797d36e3c291fc3b0358f33e9360 377 Gene3D G3DSA:3.20.20.140 74 335 1.1E-43 T 13-10-2018 RAM_38610 414c797d36e3c291fc3b0358f33e9360 377 Gene3D G3DSA:2.30.40.10 65 371 1.1E-43 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_38610 414c797d36e3c291fc3b0358f33e9360 377 SUPERFAMILY SSF51556 71 337 7.26E-43 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_43600 61c4267454a7aeb9b9dc4ef2f0bd3825 552 Pfam PF00501 AMP-binding enzyme 28 442 4.0E-115 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_43600 61c4267454a7aeb9b9dc4ef2f0bd3825 552 ProSitePatterns PS00455 Putative AMP-binding domain signature. 191 202 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_43600 61c4267454a7aeb9b9dc4ef2f0bd3825 552 Gene3D G3DSA:3.30.300.30 437 539 2.3E-31 T 13-10-2018 RAM_43600 61c4267454a7aeb9b9dc4ef2f0bd3825 552 Pfam PF13193 AMP-binding enzyme C-terminal domain 451 527 6.2E-18 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_43600 61c4267454a7aeb9b9dc4ef2f0bd3825 552 SUPERFAMILY SSF56801 21 537 5.63E-167 T 13-10-2018 RAM_43600 61c4267454a7aeb9b9dc4ef2f0bd3825 552 Gene3D G3DSA:3.40.50.12780 11 436 5.0E-126 T 13-10-2018 RAM_27510 ca3d18db1136cc785a7faf75e5420e5a 488 SUPERFAMILY SSF47336 12 85 5.76E-11 T 13-10-2018 IPR036736 ACP-like superfamily RAM_27510 ca3d18db1136cc785a7faf75e5420e5a 488 Pfam PF00668 Condensation domain 123 283 6.9E-25 T 13-10-2018 IPR001242 Condensation domain RAM_27510 ca3d18db1136cc785a7faf75e5420e5a 488 Pfam PF00668 Condensation domain 312 415 1.3E-6 T 13-10-2018 IPR001242 Condensation domain RAM_27510 ca3d18db1136cc785a7faf75e5420e5a 488 SUPERFAMILY SSF52777 95 278 6.0E-31 T 13-10-2018 RAM_27510 ca3d18db1136cc785a7faf75e5420e5a 488 SMART SM00823 Phosphopantetheine attachment site 11 79 9.1E-6 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_27510 ca3d18db1136cc785a7faf75e5420e5a 488 SUPERFAMILY SSF52777 265 477 9.64E-25 T 13-10-2018 RAM_27510 ca3d18db1136cc785a7faf75e5420e5a 488 Gene3D G3DSA:3.30.559.10 107 433 7.3E-54 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_27510 ca3d18db1136cc785a7faf75e5420e5a 488 Pfam PF00550 Phosphopantetheine attachment site 14 74 4.7E-10 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_27510 ca3d18db1136cc785a7faf75e5420e5a 488 Gene3D G3DSA:1.10.1200.10 5 81 1.8E-12 T 13-10-2018 IPR036736 ACP-like superfamily RAM_27510 ca3d18db1136cc785a7faf75e5420e5a 488 Gene3D G3DSA:3.30.559.30 261 477 7.3E-54 T 13-10-2018 RAM_38320 0ba1e99e271a6f376631e40e35284cdb 293 SMART SM00382 28 205 2.8E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_38320 0ba1e99e271a6f376631e40e35284cdb 293 Pfam PF00005 ABC transporter 20 157 1.0E-24 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_38320 0ba1e99e271a6f376631e40e35284cdb 293 SUPERFAMILY SSF52540 3 220 1.11E-50 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_38320 0ba1e99e271a6f376631e40e35284cdb 293 Gene3D G3DSA:3.40.50.300 1 232 9.8E-55 T 13-10-2018 RAM_19655 d380cc0ff51e182cce05d0c08aacff29 305 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 11 208 7.5E-4 T 13-10-2018 RAM_19655 d380cc0ff51e182cce05d0c08aacff29 305 SUPERFAMILY SSF51735 8 262 1.11E-62 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_19655 d380cc0ff51e182cce05d0c08aacff29 305 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 195 212 3.8E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19655 d380cc0ff51e182cce05d0c08aacff29 305 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 95 106 3.8E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19655 d380cc0ff51e182cce05d0c08aacff29 305 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 3.8E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19655 d380cc0ff51e182cce05d0c08aacff29 305 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 224 244 3.8E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19655 d380cc0ff51e182cce05d0c08aacff29 305 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 164 3.8E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19655 d380cc0ff51e182cce05d0c08aacff29 305 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 193 3.8E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19655 d380cc0ff51e182cce05d0c08aacff29 305 Pfam PF00106 short chain dehydrogenase 11 213 2.5E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19655 d380cc0ff51e182cce05d0c08aacff29 305 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 162 2.7E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19655 d380cc0ff51e182cce05d0c08aacff29 305 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 174 193 2.7E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19655 d380cc0ff51e182cce05d0c08aacff29 305 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 95 106 2.7E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19655 d380cc0ff51e182cce05d0c08aacff29 305 Gene3D G3DSA:3.40.50.720 7 300 1.2E-76 T 13-10-2018 RAM_19655 d380cc0ff51e182cce05d0c08aacff29 305 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 161 189 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_01230 5d5fd3eab0ab2ff026f204d2589e4f9d 325 Gene3D G3DSA:3.90.180.10 13 321 1.1E-99 T 13-10-2018 RAM_01230 5d5fd3eab0ab2ff026f204d2589e4f9d 325 SUPERFAMILY SSF50129 1 138 4.26E-38 T 13-10-2018 IPR011032 GroES-like superfamily RAM_01230 5d5fd3eab0ab2ff026f204d2589e4f9d 325 Gene3D G3DSA:3.40.50.720 120 260 1.1E-99 T 13-10-2018 RAM_01230 5d5fd3eab0ab2ff026f204d2589e4f9d 325 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 140 161 - T 13-10-2018 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 RAM_01230 5d5fd3eab0ab2ff026f204d2589e4f9d 325 SMART SM00829 10 321 2.0E-35 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_01230 5d5fd3eab0ab2ff026f204d2589e4f9d 325 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 27 87 1.1E-8 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_01230 5d5fd3eab0ab2ff026f204d2589e4f9d 325 SUPERFAMILY SSF51735 112 285 1.32E-43 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_01230 5d5fd3eab0ab2ff026f204d2589e4f9d 325 TIGRFAM TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family 1 322 2.2E-135 T 13-10-2018 IPR014189 Quinone oxidoreductase PIG3 Reactome: R-HSA-6803205 RAM_01230 5d5fd3eab0ab2ff026f204d2589e4f9d 325 Pfam PF00107 Zinc-binding dehydrogenase 151 258 3.1E-25 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RAM_10480 34ac9cf9ef36e24e5af39001c448d3ec 300 Gene3D G3DSA:3.30.470.20 195 299 4.7E-13 T 13-10-2018 RAM_10480 34ac9cf9ef36e24e5af39001c448d3ec 300 SUPERFAMILY SSF56059 131 298 5.46E-14 T 13-10-2018 RAM_36235 a636744d03da699805e69dd07b1a7e2c 207 Pfam PF02570 Precorrin-8X methylmutase 10 204 1.1E-70 T 13-10-2018 IPR003722 Cobalamin biosynthesis precorrin-8X methylmutase CobH/CbiC GO:0009236|GO:0016993 RAM_36235 a636744d03da699805e69dd07b1a7e2c 207 SUPERFAMILY SSF63965 2 204 7.98E-73 T 13-10-2018 IPR036588 Precorrin-8X methylmutase CobH/CbiC superfamily GO:0009236|GO:0016993 RAM_36235 a636744d03da699805e69dd07b1a7e2c 207 Gene3D G3DSA:3.40.50.10230 1 207 6.0E-80 T 13-10-2018 IPR036588 Precorrin-8X methylmutase CobH/CbiC superfamily GO:0009236|GO:0016993 RAM_06975 1e0febb443eb52954d87826fb5478790 414 Pfam PF05977 Transmembrane secretion effector 10 395 2.1E-39 T 13-10-2018 IPR010290 Transmembrane secretion effector RAM_06975 1e0febb443eb52954d87826fb5478790 414 SUPERFAMILY SSF103473 19 401 4.58E-37 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_06975 1e0febb443eb52954d87826fb5478790 414 Gene3D G3DSA:1.20.1250.20 18 400 2.9E-33 T 13-10-2018 RAM_27515 41778deaa91f453560327d487813870d 149 ProDom PD012709 ANTIBIOTIC DNA-BINDING DIRECT ANTIMICROBIAL SEQUENCING 3D-STRUCTURE PRECURSOR SIGNAL APOPROTEIN NEOCARZINOSTATIN 48 147 6.0E-7 T 13-10-2018 IPR002186 Neocarzinostatin family GO:0003677|GO:0006952 RAM_27515 41778deaa91f453560327d487813870d 149 PRINTS PR01885 Macromomycin family signature 58 73 1.5E-14 T 13-10-2018 IPR002186 Neocarzinostatin family GO:0003677|GO:0006952 RAM_27515 41778deaa91f453560327d487813870d 149 PRINTS PR01885 Macromomycin family signature 89 106 1.5E-14 T 13-10-2018 IPR002186 Neocarzinostatin family GO:0003677|GO:0006952 RAM_27515 41778deaa91f453560327d487813870d 149 PRINTS PR01885 Macromomycin family signature 114 130 1.5E-14 T 13-10-2018 IPR002186 Neocarzinostatin family GO:0003677|GO:0006952 RAM_27515 41778deaa91f453560327d487813870d 149 PRINTS PR01885 Macromomycin family signature 35 54 1.5E-14 T 13-10-2018 IPR002186 Neocarzinostatin family GO:0003677|GO:0006952 RAM_27515 41778deaa91f453560327d487813870d 149 Gene3D G3DSA:2.60.40.230 34 148 7.3E-30 T 13-10-2018 RAM_27515 41778deaa91f453560327d487813870d 149 Pfam PF00960 Neocarzinostatin family 38 148 4.5E-41 T 13-10-2018 IPR002186 Neocarzinostatin family GO:0003677|GO:0006952 RAM_27515 41778deaa91f453560327d487813870d 149 SUPERFAMILY SSF49319 35 149 7.33E-22 T 13-10-2018 IPR027273 Neocarzinostatin-like RAM_00425 3385025e21e1207de15c91006cad9ec1 215 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 32 45 3.7E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_00425 3385025e21e1207de15c91006cad9ec1 215 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 53 76 3.7E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_00425 3385025e21e1207de15c91006cad9ec1 215 SUPERFAMILY SSF46689 22 95 6.16E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_00425 3385025e21e1207de15c91006cad9ec1 215 Pfam PF00440 Bacterial regulatory proteins, tetR family 33 78 1.9E-13 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_00425 3385025e21e1207de15c91006cad9ec1 215 Gene3D G3DSA:1.10.357.10 27 212 1.3E-57 T 13-10-2018 RAM_00425 3385025e21e1207de15c91006cad9ec1 215 ProSitePatterns PS01081 TetR-type HTH domain signature. 44 75 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RAM_29145 50cb70d08762c2b40a4eeb2e4f6bbc40 315 SUPERFAMILY SSF50249 1 67 1.08E-18 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_29145 50cb70d08762c2b40a4eeb2e4f6bbc40 315 Gene3D G3DSA:2.40.50.140 252 315 2.7E-17 T 13-10-2018 RAM_29145 50cb70d08762c2b40a4eeb2e4f6bbc40 315 Gene3D G3DSA:2.40.50.140 158 226 8.6E-21 T 13-10-2018 RAM_29145 50cb70d08762c2b40a4eeb2e4f6bbc40 315 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 13-10-2018 IPR019844 Cold-shock conserved site RAM_29145 50cb70d08762c2b40a4eeb2e4f6bbc40 315 SMART SM00357 253 315 6.8E-15 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 RAM_29145 50cb70d08762c2b40a4eeb2e4f6bbc40 315 SMART SM00357 80 142 1.6E-14 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 RAM_29145 50cb70d08762c2b40a4eeb2e4f6bbc40 315 SMART SM00357 3 68 1.6E-23 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 RAM_29145 50cb70d08762c2b40a4eeb2e4f6bbc40 315 SMART SM00357 159 222 9.7E-19 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 RAM_29145 50cb70d08762c2b40a4eeb2e4f6bbc40 315 SUPERFAMILY SSF50249 254 313 2.57E-14 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_29145 50cb70d08762c2b40a4eeb2e4f6bbc40 315 ProSitePatterns PS00352 'Cold-shock' domain signature. 171 190 - T 13-10-2018 IPR019844 Cold-shock conserved site RAM_29145 50cb70d08762c2b40a4eeb2e4f6bbc40 315 Gene3D G3DSA:2.40.50.140 1 67 7.1E-23 T 13-10-2018 RAM_29145 50cb70d08762c2b40a4eeb2e4f6bbc40 315 Pfam PF00313 'Cold-shock' DNA-binding domain 253 313 6.4E-15 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RAM_29145 50cb70d08762c2b40a4eeb2e4f6bbc40 315 Pfam PF00313 'Cold-shock' DNA-binding domain 81 140 1.3E-16 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RAM_29145 50cb70d08762c2b40a4eeb2e4f6bbc40 315 Pfam PF00313 'Cold-shock' DNA-binding domain 159 220 2.3E-19 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RAM_29145 50cb70d08762c2b40a4eeb2e4f6bbc40 315 Pfam PF00313 'Cold-shock' DNA-binding domain 3 66 6.3E-21 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RAM_29145 50cb70d08762c2b40a4eeb2e4f6bbc40 315 Gene3D G3DSA:2.40.50.140 78 140 4.8E-18 T 13-10-2018 RAM_29145 50cb70d08762c2b40a4eeb2e4f6bbc40 315 SUPERFAMILY SSF50249 159 222 1.03E-17 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_29145 50cb70d08762c2b40a4eeb2e4f6bbc40 315 SUPERFAMILY SSF50249 79 142 1.57E-16 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_29145 50cb70d08762c2b40a4eeb2e4f6bbc40 315 PRINTS PR00050 Cold shock protein signature 4 19 1.1E-11 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RAM_29145 50cb70d08762c2b40a4eeb2e4f6bbc40 315 PRINTS PR00050 Cold shock protein signature 41 59 1.1E-11 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RAM_29145 50cb70d08762c2b40a4eeb2e4f6bbc40 315 PRINTS PR00050 Cold shock protein signature 25 34 1.1E-11 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RAM_29145 50cb70d08762c2b40a4eeb2e4f6bbc40 315 ProSitePatterns PS00352 'Cold-shock' domain signature. 265 284 - T 13-10-2018 IPR019844 Cold-shock conserved site RAM_33825 e6864f59dd48b55e4996d09ed8f2c696 236 Gene3D G3DSA:1.20.1290.10 2 134 1.5E-13 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_33825 e6864f59dd48b55e4996d09ed8f2c696 236 Gene3D G3DSA:1.20.1290.10 135 236 2.4E-13 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_33825 e6864f59dd48b55e4996d09ed8f2c696 236 SUPERFAMILY SSF69118 6 235 8.48E-32 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_33825 e6864f59dd48b55e4996d09ed8f2c696 236 Pfam PF02627 Carboxymuconolactone decarboxylase family 160 229 4.5E-6 T 13-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RAM_33825 e6864f59dd48b55e4996d09ed8f2c696 236 Pfam PF02627 Carboxymuconolactone decarboxylase family 21 96 9.0E-5 T 13-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RAM_42040 6be8ed50a662fa35d308916a342682ab 444 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 12 341 7.8E-44 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAM_42040 6be8ed50a662fa35d308916a342682ab 444 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 110 128 9.8E-9 T 13-10-2018 RAM_42040 6be8ed50a662fa35d308916a342682ab 444 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 13 32 9.8E-9 T 13-10-2018 RAM_42040 6be8ed50a662fa35d308916a342682ab 444 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 170 188 9.8E-9 T 13-10-2018 RAM_42040 6be8ed50a662fa35d308916a342682ab 444 Gene3D G3DSA:3.50.50.100 2 412 2.5E-114 T 13-10-2018 RAM_42040 6be8ed50a662fa35d308916a342682ab 444 SUPERFAMILY SSF51905 6 350 6.82E-28 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_14240 a919293af597538d66a7366b3562dc03 103 Pfam PF13397 RNA polymerase-binding protein 1 97 3.8E-38 T 13-10-2018 IPR025182 RNA polymerase-binding protein RbpA GO:0001000|GO:0045893 RAM_14240 a919293af597538d66a7366b3562dc03 103 ProSitePatterns PS00202 Rubredoxin signature. 40 50 - T 13-10-2018 IPR018527 Rubredoxin, iron-binding site GO:0046872 RAM_14240 a919293af597538d66a7366b3562dc03 103 Gene3D G3DSA:2.20.28.270 18 61 1.8E-11 T 13-10-2018 IPR038638 RbpA superfamily RAM_14240 a919293af597538d66a7366b3562dc03 103 Hamap MF_01483 RNA polymerase-binding protein RbpA [rbpA]. 6 102 24.981 T 13-10-2018 IPR025182 RNA polymerase-binding protein RbpA GO:0001000|GO:0045893 RAM_18205 187e8383410625d71ba906050e03fb9f 226 Gene3D G3DSA:1.10.10.10 128 225 2.5E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_18205 187e8383410625d71ba906050e03fb9f 226 SMART SM00862 149 222 2.7E-24 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_18205 187e8383410625d71ba906050e03fb9f 226 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 222 1.3E-21 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_18205 187e8383410625d71ba906050e03fb9f 226 Gene3D G3DSA:3.40.50.2300 2 127 7.1E-30 T 13-10-2018 RAM_18205 187e8383410625d71ba906050e03fb9f 226 SUPERFAMILY SSF46894 123 223 2.66E-23 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_18205 187e8383410625d71ba906050e03fb9f 226 SUPERFAMILY SSF52172 5 131 6.83E-35 T 13-10-2018 IPR011006 CheY-like superfamily RAM_18205 187e8383410625d71ba906050e03fb9f 226 Pfam PF00072 Response regulator receiver domain 9 117 1.9E-22 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_18205 187e8383410625d71ba906050e03fb9f 226 SMART SM00448 7 117 4.4E-32 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_08425 7a03ed96fef6b5e54fde992dad8dd115 427 Gene3D G3DSA:3.30.565.10 230 346 2.7E-8 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_08425 7a03ed96fef6b5e54fde992dad8dd115 427 Pfam PF00196 Bacterial regulatory proteins, luxR family 359 414 8.6E-19 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_08425 7a03ed96fef6b5e54fde992dad8dd115 427 SUPERFAMILY SSF46894 349 419 2.11E-20 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_08425 7a03ed96fef6b5e54fde992dad8dd115 427 Gene3D G3DSA:1.10.10.10 349 424 8.6E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_08425 7a03ed96fef6b5e54fde992dad8dd115 427 ProSitePatterns PS00622 LuxR-type HTH domain signature. 374 401 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_08425 7a03ed96fef6b5e54fde992dad8dd115 427 SMART SM00421 357 414 1.6E-22 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_08425 7a03ed96fef6b5e54fde992dad8dd115 427 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 374 390 2.0E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_08425 7a03ed96fef6b5e54fde992dad8dd115 427 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 390 402 2.0E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_08425 7a03ed96fef6b5e54fde992dad8dd115 427 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 360 374 2.0E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_38635 b55e2b07e5d42d5cc22e89e0b4f94e80 342 Pfam PF07690 Major Facilitator Superfamily 8 123 8.5E-12 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_38635 b55e2b07e5d42d5cc22e89e0b4f94e80 342 SUPERFAMILY SSF103473 6 123 1.26E-14 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_38635 b55e2b07e5d42d5cc22e89e0b4f94e80 342 Gene3D G3DSA:1.20.1250.20 2 124 1.2E-10 T 13-10-2018 RAM_23980 52b455f9fd2dfec99f6c7218e3d67088 177 Gene3D G3DSA:1.10.357.10 2 176 7.7E-29 T 13-10-2018 RAM_23980 52b455f9fd2dfec99f6c7218e3d67088 177 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 56 4.3E-18 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_23980 52b455f9fd2dfec99f6c7218e3d67088 177 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 32 55 1.0E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_23980 52b455f9fd2dfec99f6c7218e3d67088 177 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 11 24 1.0E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_23980 52b455f9fd2dfec99f6c7218e3d67088 177 SUPERFAMILY SSF46689 3 74 9.48E-19 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_37025 8d1636ce09a71b2c1a38c6b24d363b62 424 Pfam PF04909 Amidohydrolase 70 404 7.0E-21 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RAM_37025 8d1636ce09a71b2c1a38c6b24d363b62 424 Gene3D G3DSA:3.20.20.140 3 408 3.7E-77 T 13-10-2018 RAM_37025 8d1636ce09a71b2c1a38c6b24d363b62 424 SUPERFAMILY SSF51556 6 412 4.28E-50 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_44125 b8cbfba88d1eefaa31ae5eca0861745e 164 Pfam PF00583 Acetyltransferase (GNAT) family 33 120 1.2E-15 T 13-10-2018 IPR000182 GNAT domain RAM_44125 b8cbfba88d1eefaa31ae5eca0861745e 164 Gene3D G3DSA:3.40.630.30 1 161 1.5E-51 T 13-10-2018 RAM_44125 b8cbfba88d1eefaa31ae5eca0861745e 164 SUPERFAMILY SSF55729 2 121 4.56E-21 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_44125 b8cbfba88d1eefaa31ae5eca0861745e 164 TIGRFAM TIGR02406 ectoine_EctA: diaminobutyrate acetyltransferase 2 156 3.7E-58 T 13-10-2018 IPR012772 L-2,4-diaminobutyric acid acetyltransferase GO:0019491|GO:0033816 KEGG: 00260+2.3.1.178 RAM_40840 5c25edda8e80638d3f95612a678ab82b 1248 SUPERFAMILY SSF90123 679 992 3.53E-69 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RAM_40840 5c25edda8e80638d3f95612a678ab82b 1248 Gene3D G3DSA:3.40.50.300 998 1248 6.7E-83 T 13-10-2018 RAM_40840 5c25edda8e80638d3f95612a678ab82b 1248 SUPERFAMILY SSF90123 22 338 9.94E-66 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RAM_40840 5c25edda8e80638d3f95612a678ab82b 1248 SMART SM00382 375 561 2.6E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_40840 5c25edda8e80638d3f95612a678ab82b 1248 SMART SM00382 1038 1224 1.1E-18 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_40840 5c25edda8e80638d3f95612a678ab82b 1248 Pfam PF00005 ABC transporter 367 515 3.5E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_40840 5c25edda8e80638d3f95612a678ab82b 1248 SUPERFAMILY SSF52540 1004 1246 1.87E-81 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_40840 5c25edda8e80638d3f95612a678ab82b 1248 Pfam PF00005 ABC transporter 1030 1178 5.8E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_40840 5c25edda8e80638d3f95612a678ab82b 1248 ProSitePatterns PS00211 ABC transporters family signature. 487 501 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_40840 5c25edda8e80638d3f95612a678ab82b 1248 Pfam PF00664 ABC transporter transmembrane region 696 964 3.4E-35 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 RAM_40840 5c25edda8e80638d3f95612a678ab82b 1248 Pfam PF00664 ABC transporter transmembrane region 36 303 3.1E-34 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 RAM_40840 5c25edda8e80638d3f95612a678ab82b 1248 Gene3D G3DSA:1.20.1560.10 676 995 2.9E-77 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RAM_40840 5c25edda8e80638d3f95612a678ab82b 1248 Gene3D G3DSA:1.20.1560.10 6 336 1.1E-68 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RAM_40840 5c25edda8e80638d3f95612a678ab82b 1248 Gene3D G3DSA:3.40.50.300 348 596 8.4E-81 T 13-10-2018 RAM_40840 5c25edda8e80638d3f95612a678ab82b 1248 SUPERFAMILY SSF52540 340 582 3.37E-83 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_05560 a2c1982b3a9a38ae18b638f9b33d1cf3 216 SUPERFAMILY SSF56300 13 206 3.98E-30 T 13-10-2018 RAM_05560 a2c1982b3a9a38ae18b638f9b33d1cf3 216 Gene3D G3DSA:3.60.21.10 37 206 1.7E-10 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like RAM_05560 a2c1982b3a9a38ae18b638f9b33d1cf3 216 Pfam PF00149 Calcineurin-like phosphoesterase 19 189 1.3E-10 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 RAM_15215 d124edd2e36c6f10f9ef7b5100bbfee2 748 SMART SM01008 236 315 1.1E-8 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RAM_15215 d124edd2e36c6f10f9ef7b5100bbfee2 748 Gene3D G3DSA:3.30.365.10 356 447 4.4E-39 T 13-10-2018 RAM_15215 d124edd2e36c6f10f9ef7b5100bbfee2 748 Gene3D G3DSA:3.30.365.10 344 569 4.4E-39 T 13-10-2018 RAM_15215 d124edd2e36c6f10f9ef7b5100bbfee2 748 SUPERFAMILY SSF54665 212 314 1.44E-17 T 13-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily RAM_15215 d124edd2e36c6f10f9ef7b5100bbfee2 748 Gene3D G3DSA:3.30.365.10 72 208 9.7E-20 T 13-10-2018 RAM_15215 d124edd2e36c6f10f9ef7b5100bbfee2 748 SUPERFAMILY SSF56003 78 206 3.93E-23 T 13-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 RAM_15215 d124edd2e36c6f10f9ef7b5100bbfee2 748 PIRSF PIRSF036389 8 742 5.3E-167 T 13-10-2018 IPR012368 Oxidoreductase molybdopterin-binding subunit, IorB-related RAM_15215 d124edd2e36c6f10f9ef7b5100bbfee2 748 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 345 576 2.2E-23 T 13-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RAM_15215 d124edd2e36c6f10f9ef7b5100bbfee2 748 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 79 208 2.1E-12 T 13-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RAM_15215 d124edd2e36c6f10f9ef7b5100bbfee2 748 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 612 685 3.2E-6 T 13-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RAM_15215 d124edd2e36c6f10f9ef7b5100bbfee2 748 SUPERFAMILY SSF56003 344 738 1.28E-84 T 13-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 RAM_15215 d124edd2e36c6f10f9ef7b5100bbfee2 748 Gene3D G3DSA:3.30.365.10 593 740 1.7E-21 T 13-10-2018 RAM_15215 d124edd2e36c6f10f9ef7b5100bbfee2 748 Gene3D G3DSA:3.90.1170.50 209 310 5.8E-7 T 13-10-2018 RAM_18605 5f1aed80751d438cf644a35947ccb5da 363 SUPERFAMILY SSF56601 43 335 7.25E-76 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_18605 5f1aed80751d438cf644a35947ccb5da 363 Gene3D G3DSA:3.40.710.10 31 363 1.6E-103 T 13-10-2018 RAM_18605 5f1aed80751d438cf644a35947ccb5da 363 Pfam PF00144 Beta-lactamase 44 337 2.7E-63 T 13-10-2018 IPR001466 Beta-lactamase-related RAM_14485 3510ee5f268808c6da76b1ea5120d9c8 397 SUPERFAMILY SSF53756 1 395 8.9E-77 T 13-10-2018 RAM_14485 3510ee5f268808c6da76b1ea5120d9c8 397 Gene3D G3DSA:3.40.50.2000 1 222 1.2E-26 T 13-10-2018 RAM_14485 3510ee5f268808c6da76b1ea5120d9c8 397 Pfam PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 196 378 6.2E-13 T 13-10-2018 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0016758 Reactome: R-HSA-156588 RAM_14485 3510ee5f268808c6da76b1ea5120d9c8 397 Gene3D G3DSA:3.40.50.2000 223 385 8.8E-50 T 13-10-2018 RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1033 1047 - T 13-10-2018 IPR019775 WD40 repeat, conserved site RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 Pfam PF00400 WD domain, G-beta repeat 619 650 0.0048 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 Pfam PF00400 WD domain, G-beta repeat 882 912 0.0026 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 Pfam PF00400 WD domain, G-beta repeat 662 695 3.8E-8 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 Pfam PF00400 WD domain, G-beta repeat 1020 1046 0.057 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 Pfam PF00400 WD domain, G-beta repeat 755 787 1.3E-8 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 Pfam PF00400 WD domain, G-beta repeat 1059 1091 3.8E-9 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 Pfam PF00400 WD domain, G-beta repeat 840 876 5.3E-8 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 Pfam PF00400 WD domain, G-beta repeat 923 956 3.7E-8 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 Pfam PF00400 WD domain, G-beta repeat 1159 1193 5.7E-7 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 Pfam PF00400 WD domain, G-beta repeat 807 831 0.0087 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 Pfam PF00400 WD domain, G-beta repeat 575 607 7.0E-5 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 Pfam PF00400 WD domain, G-beta repeat 709 741 2.1E-5 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 Pfam PF00400 WD domain, G-beta repeat 1118 1148 4.5E-5 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 Gene3D G3DSA:2.130.10.10 1105 1216 4.6E-28 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 Gene3D G3DSA:2.130.10.10 968 1104 6.9E-34 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 Gene3D G3DSA:2.130.10.10 798 882 1.6E-25 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 943 957 - T 13-10-2018 IPR019775 WD40 repeat, conserved site RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 863 877 - T 13-10-2018 IPR019775 WD40 repeat, conserved site RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 SMART SM00320 1110 1148 4.6E-6 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 SMART SM00320 917 956 2.4E-11 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 SMART SM00320 748 787 1.8E-9 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 SMART SM00320 963 1002 0.13 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 SMART SM00320 1008 1046 0.0073 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 SMART SM00320 702 741 6.2E-7 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 SMART SM00320 1154 1193 2.3E-10 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 SMART SM00320 656 695 4.4E-9 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 SMART SM00320 878 914 0.21 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 SMART SM00320 1051 1091 4.6E-10 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 SMART SM00320 568 607 5.7E-7 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 SMART SM00320 791 832 0.017 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 SMART SM00320 837 876 8.7E-11 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 SMART SM00320 613 650 3.7E-4 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 SUPERFAMILY SSF52540 101 309 5.0E-12 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 Gene3D G3DSA:2.130.10.10 556 707 4.5E-37 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1078 1092 - T 13-10-2018 IPR019775 WD40 repeat, conserved site RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1135 1149 - T 13-10-2018 IPR019775 WD40 repeat, conserved site RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1180 1194 - T 13-10-2018 IPR019775 WD40 repeat, conserved site RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 SUPERFAMILY SSF50978 882 1193 1.28E-71 T 13-10-2018 IPR036322 WD40-repeat-containing domain superfamily GO:0005515 RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 SUPERFAMILY SSF50978 661 956 3.3E-76 T 13-10-2018 IPR036322 WD40-repeat-containing domain superfamily GO:0005515 RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 Gene3D G3DSA:2.130.10.10 883 967 5.9E-28 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 774 788 - T 13-10-2018 IPR019775 WD40 repeat, conserved site RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 Gene3D G3DSA:2.130.10.10 708 797 2.4E-27 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 PRINTS PR00320 G protein beta WD-40 repeat signature 863 877 5.9E-9 T 13-10-2018 IPR020472 G-protein beta WD-40 repeat RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 PRINTS PR00320 G protein beta WD-40 repeat signature 682 696 5.9E-9 T 13-10-2018 IPR020472 G-protein beta WD-40 repeat RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 PRINTS PR00320 G protein beta WD-40 repeat signature 1078 1092 5.9E-9 T 13-10-2018 IPR020472 G-protein beta WD-40 repeat RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 682 696 - T 13-10-2018 IPR019775 WD40 repeat, conserved site RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 728 742 - T 13-10-2018 IPR019775 WD40 repeat, conserved site RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 SUPERFAMILY SSF50998 571 700 5.96E-27 T 13-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily RAM_18355 91f942256a86822cfd478c26e3cafb1e 1229 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 637 651 - T 13-10-2018 IPR019775 WD40 repeat, conserved site RAM_33770 ace16b27c02e2712e6c173881a30cfb5 301 SUPERFAMILY SSF52540 3 221 2.71E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_33770 ace16b27c02e2712e6c173881a30cfb5 301 Gene3D G3DSA:3.40.50.300 1 232 3.8E-63 T 13-10-2018 RAM_33770 ace16b27c02e2712e6c173881a30cfb5 301 SMART SM00382 27 208 3.4E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_33770 ace16b27c02e2712e6c173881a30cfb5 301 Pfam PF00005 ABC transporter 19 159 1.0E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_33770 ace16b27c02e2712e6c173881a30cfb5 301 ProSitePatterns PS00211 ABC transporters family signature. 131 145 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_06725 ff07cb21b154503238bdca03c5f8c7b9 98 SUPERFAMILY SSF55729 6 93 1.42E-23 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_06725 ff07cb21b154503238bdca03c5f8c7b9 98 Pfam PF14542 GCN5-related N-acetyl-transferase 15 91 6.2E-23 T 13-10-2018 IPR031165 Yjdj-type Gcn5-related N-acetyltransferase RAM_06725 ff07cb21b154503238bdca03c5f8c7b9 98 Gene3D G3DSA:3.40.630.30 8 97 4.8E-22 T 13-10-2018 RAM_03515 28821550b558c6aa5cf6a7735b1a5b00 104 SMART SM00739 2 29 1.6E-5 T 13-10-2018 IPR005824 KOW RAM_03515 28821550b558c6aa5cf6a7735b1a5b00 104 ProSitePatterns PS01108 Ribosomal protein L24 signature. 6 23 - T 13-10-2018 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_03515 28821550b558c6aa5cf6a7735b1a5b00 104 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 1 98 21.76 T 13-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_03515 28821550b558c6aa5cf6a7735b1a5b00 104 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 1 104 3.2E-37 T 13-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_03515 28821550b558c6aa5cf6a7735b1a5b00 104 Pfam PF00467 KOW motif 5 36 1.8E-9 T 13-10-2018 IPR005824 KOW RAM_03515 28821550b558c6aa5cf6a7735b1a5b00 104 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 38 104 1.7E-25 T 13-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_03515 28821550b558c6aa5cf6a7735b1a5b00 104 SUPERFAMILY SSF50104 1 101 1.13E-31 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily RAM_03515 28821550b558c6aa5cf6a7735b1a5b00 104 Gene3D G3DSA:2.30.30.30 1 103 7.4E-36 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 RAM_47540 6cbda94a666f9ad95e812e3e506bf3c2 233 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_47540 6cbda94a666f9ad95e812e3e506bf3c2 233 SMART SM00382 38 226 3.9E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_47540 6cbda94a666f9ad95e812e3e506bf3c2 233 SUPERFAMILY SSF52540 14 227 3.13E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_47540 6cbda94a666f9ad95e812e3e506bf3c2 233 Gene3D G3DSA:3.40.50.300 12 231 7.3E-59 T 13-10-2018 RAM_47540 6cbda94a666f9ad95e812e3e506bf3c2 233 Pfam PF00005 ABC transporter 30 177 3.6E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_25560 eebf0fe4312755a64e2698703798c2e3 367 SUPERFAMILY SSF51679 3 364 4.06E-91 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_25560 eebf0fe4312755a64e2698703798c2e3 367 Pfam PF00296 Luciferase-like monooxygenase 4 334 2.8E-87 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_25560 eebf0fe4312755a64e2698703798c2e3 367 Gene3D G3DSA:3.20.20.30 1 362 1.4E-131 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_08875 2aeed84847e8360cda7bceb58209ea52 176 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 88 121 2.2E-5 T 13-10-2018 IPR001451 Hexapeptide repeat RAM_08875 2aeed84847e8360cda7bceb58209ea52 176 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 11 45 6.5E-6 T 13-10-2018 IPR001451 Hexapeptide repeat RAM_08875 2aeed84847e8360cda7bceb58209ea52 176 Gene3D G3DSA:2.160.10.10 2 173 2.0E-47 T 13-10-2018 RAM_08875 2aeed84847e8360cda7bceb58209ea52 176 SUPERFAMILY SSF51161 1 152 2.63E-39 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily RAM_42760 a925d290b36a1f73bf69e2511845ddf4 210 Gene3D G3DSA:3.40.50.150 24 206 5.3E-14 T 13-10-2018 RAM_42760 a925d290b36a1f73bf69e2511845ddf4 210 SUPERFAMILY SSF53335 56 204 1.52E-15 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_47590 df595f27cf1f8217cd1123a5cf93f4da 152 Pfam PF01047 MarR family 32 90 9.3E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_47590 df595f27cf1f8217cd1123a5cf93f4da 152 Gene3D G3DSA:1.10.10.10 6 141 1.8E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_47590 df595f27cf1f8217cd1123a5cf93f4da 152 SMART SM00347 25 125 4.1E-16 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_47590 df595f27cf1f8217cd1123a5cf93f4da 152 SUPERFAMILY SSF46785 7 142 1.51E-25 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_42355 0836a6b99e68a36771d5230e86974e12 337 Gene3D G3DSA:3.40.50.300 1 261 4.1E-68 T 13-10-2018 RAM_42355 0836a6b99e68a36771d5230e86974e12 337 Pfam PF00005 ABC transporter 21 169 3.1E-24 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_42355 0836a6b99e68a36771d5230e86974e12 337 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_42355 0836a6b99e68a36771d5230e86974e12 337 Pfam PF09383 NIL domain 260 324 5.3E-7 T 13-10-2018 IPR018449 NIL domain RAM_42355 0836a6b99e68a36771d5230e86974e12 337 SMART SM00382 30 218 5.4E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_42355 0836a6b99e68a36771d5230e86974e12 337 SUPERFAMILY SSF52540 1 239 2.56E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_23625 35c6881985312de67706095f1c763ddb 328 Gene3D G3DSA:3.40.50.720 1 155 4.8E-52 T 13-10-2018 RAM_23625 35c6881985312de67706095f1c763ddb 328 Gene3D G3DSA:3.90.110.10 156 328 2.4E-63 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 RAM_23625 35c6881985312de67706095f1c763ddb 328 Hamap MF_01517 Malate dehydrogenase [mdh]. 2 326 55.913 T 13-10-2018 IPR010945 Malate dehydrogenase, type 2 GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 RAM_23625 35c6881985312de67706095f1c763ddb 328 SUPERFAMILY SSF51735 3 156 1.02E-39 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_23625 35c6881985312de67706095f1c763ddb 328 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 157 323 1.7E-32 T 13-10-2018 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 RAM_23625 35c6881985312de67706095f1c763ddb 328 ProSitePatterns PS00068 Malate dehydrogenase active site signature. 156 168 - T 13-10-2018 IPR001252 Malate dehydrogenase, active site GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383|Reactome: R-HSA-70263 RAM_23625 35c6881985312de67706095f1c763ddb 328 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 7 147 4.0E-31 T 13-10-2018 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 RAM_23625 35c6881985312de67706095f1c763ddb 328 TIGRFAM TIGR01759 MalateDH-SF1: malate dehydrogenase 4 322 1.2E-141 T 13-10-2018 IPR010945 Malate dehydrogenase, type 2 GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 RAM_23625 35c6881985312de67706095f1c763ddb 328 SUPERFAMILY SSF56327 157 324 3.09E-58 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 RAM_23625 35c6881985312de67706095f1c763ddb 328 PIRSF PIRSF000102 2 326 6.4E-59 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RAM_06770 f6d4e98923692b6ea73d2ce249cfdd84 188 Pfam PF11706 CGNR zinc finger 141 177 1.7E-7 T 13-10-2018 IPR021005 Zinc finger, CGNR RAM_06770 f6d4e98923692b6ea73d2ce249cfdd84 188 SUPERFAMILY SSF160904 8 177 1.11E-34 T 13-10-2018 RAM_06770 f6d4e98923692b6ea73d2ce249cfdd84 188 Gene3D G3DSA:1.10.3300.10 8 179 1.0E-20 T 13-10-2018 IPR023286 ABATE domain superfamily RAM_06770 f6d4e98923692b6ea73d2ce249cfdd84 188 Pfam PF07336 Putative stress-induced transcription regulator 12 135 1.9E-18 T 13-10-2018 IPR010852 Putative stress-induced transcription regulator RAM_07520 b62183ec5a348097bfad7f57c63059f2 302 SUPERFAMILY SSF51735 1 298 4.09E-69 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_07520 b62183ec5a348097bfad7f57c63059f2 302 PIRSF PIRSF001439 1 301 5.1E-58 T 13-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 RAM_07520 b62183ec5a348097bfad7f57c63059f2 302 Gene3D G3DSA:3.40.50.720 111 282 2.5E-74 T 13-10-2018 RAM_07520 b62183ec5a348097bfad7f57c63059f2 302 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 1 299 2.8E-43 T 13-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 RAM_07520 b62183ec5a348097bfad7f57c63059f2 302 Gene3D G3DSA:3.30.1780.10 13 293 2.5E-74 T 13-10-2018 IPR023401 Ornithine cyclodeaminase, N-terminal Reactome: R-HSA-71064 RAM_32400 f377a4eace05cce9402ece93b72168bb 753 SUPERFAMILY SSF55666 156 263 6.25E-24 T 13-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 RAM_32400 f377a4eace05cce9402ece93b72168bb 753 SUPERFAMILY SSF54211 326 522 7.09E-45 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RAM_32400 f377a4eace05cce9402ece93b72168bb 753 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 13 730 26.885 T 13-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RAM_32400 f377a4eace05cce9402ece93b72168bb 753 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 270 350 6.1E-20 T 13-10-2018 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RAM_32400 f377a4eace05cce9402ece93b72168bb 753 Pfam PF00013 KH domain 590 647 2.9E-10 T 13-10-2018 IPR004088 K Homology domain, type 1 GO:0003723 RAM_32400 f377a4eace05cce9402ece93b72168bb 753 Gene3D G3DSA:3.30.230.70 8 253 5.3E-84 T 13-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 RAM_32400 f377a4eace05cce9402ece93b72168bb 753 SUPERFAMILY SSF50249 654 724 2.69E-14 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_32400 f377a4eace05cce9402ece93b72168bb 753 Gene3D G3DSA:3.30.230.70 264 584 6.0E-107 T 13-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 RAM_32400 f377a4eace05cce9402ece93b72168bb 753 SUPERFAMILY SSF55666 481 580 4.25E-24 T 13-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 RAM_32400 f377a4eace05cce9402ece93b72168bb 753 SUPERFAMILY SSF54211 13 155 3.8E-45 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RAM_32400 f377a4eace05cce9402ece93b72168bb 753 TIGRFAM TIGR02696 pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase 9 725 0.0 T 13-10-2018 IPR014069 Guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase GO:0004654|GO:0005737|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RAM_32400 f377a4eace05cce9402ece93b72168bb 753 SUPERFAMILY SSF46915 267 352 5.75E-17 T 13-10-2018 IPR036456 Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RAM_32400 f377a4eace05cce9402ece93b72168bb 753 SMART SM00316 656 727 7.8E-17 T 13-10-2018 IPR022967 RNA-binding domain, S1 RAM_32400 f377a4eace05cce9402ece93b72168bb 753 SUPERFAMILY SSF54791 589 675 1.38E-17 T 13-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 RAM_32400 f377a4eace05cce9402ece93b72168bb 753 Pfam PF01138 3' exoribonuclease family, domain 1 355 487 7.3E-17 T 13-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 RAM_32400 f377a4eace05cce9402ece93b72168bb 753 Pfam PF01138 3' exoribonuclease family, domain 1 24 155 3.9E-18 T 13-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 RAM_32400 f377a4eace05cce9402ece93b72168bb 753 Gene3D G3DSA:2.40.50.140 585 709 2.8E-46 T 13-10-2018 RAM_32400 f377a4eace05cce9402ece93b72168bb 753 PIRSF PIRSF005499 11 753 7.6E-285 T 13-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RAM_32400 f377a4eace05cce9402ece93b72168bb 753 SMART SM00322 586 651 1.0E-10 T 13-10-2018 IPR004087 K Homology domain GO:0003676 RAM_32400 f377a4eace05cce9402ece93b72168bb 753 Pfam PF00575 S1 RNA binding domain 655 724 1.1E-12 T 13-10-2018 IPR003029 S1 domain GO:0003676 RAM_32400 f377a4eace05cce9402ece93b72168bb 753 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 21 726 1.7E-263 T 13-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RAM_32400 f377a4eace05cce9402ece93b72168bb 753 Pfam PF03725 3' exoribonuclease family, domain 2 490 564 1.0E-6 T 13-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 RAM_07555 cc87e41e9bbbb5f774918123207ebb79 373 SUPERFAMILY SSF53067 3 157 3.14E-16 T 13-10-2018 RAM_07555 cc87e41e9bbbb5f774918123207ebb79 373 Gene3D G3DSA:3.30.420.40 166 190 4.1E-26 T 13-10-2018 RAM_07555 cc87e41e9bbbb5f774918123207ebb79 373 Gene3D G3DSA:3.30.420.40 5 165 4.1E-26 T 13-10-2018 RAM_09675 ae7330faf92184c85169583a7b2834ae 429 SMART SM00382 229 379 1.7E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_09675 ae7330faf92184c85169583a7b2834ae 429 SUPERFAMILY SSF47364 124 203 1.83E-17 T 13-10-2018 IPR036225 SRP/SRP receptor, N-terminal Reactome: R-HSA-1799339 RAM_09675 ae7330faf92184c85169583a7b2834ae 429 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 153 428 1.1E-103 T 13-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 RAM_09675 ae7330faf92184c85169583a7b2834ae 429 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 152 429 57.317 T 13-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 RAM_09675 ae7330faf92184c85169583a7b2834ae 429 Pfam PF02881 SRP54-type protein, helical bundle domain 144 205 1.5E-9 T 13-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 RAM_09675 ae7330faf92184c85169583a7b2834ae 429 Gene3D G3DSA:3.40.50.300 226 417 7.0E-98 T 13-10-2018 RAM_09675 ae7330faf92184c85169583a7b2834ae 429 Pfam PF00448 SRP54-type protein, GTPase domain 230 429 1.6E-71 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 RAM_09675 ae7330faf92184c85169583a7b2834ae 429 SMART SM00963 129 209 8.9E-16 T 13-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 RAM_09675 ae7330faf92184c85169583a7b2834ae 429 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 402 415 - T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 RAM_09675 ae7330faf92184c85169583a7b2834ae 429 SMART SM00962 230 429 7.7E-101 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 RAM_09675 ae7330faf92184c85169583a7b2834ae 429 Gene3D G3DSA:1.20.120.140 127 427 7.0E-98 T 13-10-2018 RAM_09675 ae7330faf92184c85169583a7b2834ae 429 SUPERFAMILY SSF52540 228 428 1.99E-47 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_38995 48a256c564ee021a0015defb1be33fa3 414 SUPERFAMILY SSF54909 57 406 2.68E-89 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_38995 48a256c564ee021a0015defb1be33fa3 414 Pfam PF04261 Dyp-type peroxidase family 64 401 2.8E-96 T 13-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 RAM_38995 48a256c564ee021a0015defb1be33fa3 414 TIGRFAM TIGR01413 Dyp_perox_fam: Dyp-type peroxidase family 64 401 5.6E-88 T 13-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 RAM_12480 65967406898c24d91e48c41c8bbe533a 379 SUPERFAMILY SSF55931 3 372 5.49E-110 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 RAM_12480 65967406898c24d91e48c41c8bbe533a 379 Pfam PF04107 Glutamate-cysteine ligase family 2(GCS2) 13 294 1.7E-65 T 13-10-2018 IPR006336 Glutamate--cysteine ligase, GCS2 GO:0004357|GO:0042398 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 RAM_12480 65967406898c24d91e48c41c8bbe533a 379 Hamap MF_01609 Glutamate--cysteine ligase [gshA]. 1 379 99.375 T 13-10-2018 IPR011793 Putative glutamate--cysteine ligase YbdK GO:0016879 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 RAM_12480 65967406898c24d91e48c41c8bbe533a 379 Gene3D G3DSA:3.30.590.20 2 375 7.5E-109 T 13-10-2018 RAM_12480 65967406898c24d91e48c41c8bbe533a 379 TIGRFAM TIGR02050 gshA_cyan_rel: carboxylate-amine ligase, YbdK family 12 299 1.8E-102 T 13-10-2018 IPR011793 Putative glutamate--cysteine ligase YbdK GO:0016879 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 RAM_21040 9e7f187236a6bf8ade51676421f18adf 196 SUPERFAMILY SSF52738 8 194 4.45E-52 T 13-10-2018 IPR035909 Methylesterase CheB, C-terminal RAM_21040 9e7f187236a6bf8ade51676421f18adf 196 Gene3D G3DSA:3.40.50.180 5 196 2.9E-55 T 13-10-2018 IPR035909 Methylesterase CheB, C-terminal RAM_21040 9e7f187236a6bf8ade51676421f18adf 196 Pfam PF01339 CheB methylesterase 12 188 1.6E-48 T 13-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RAM_02855 d7b12eec233f5bb702af0c9be10d4923 215 Pfam PF01569 PAP2 superfamily 127 207 5.6E-11 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RAM_02855 d7b12eec233f5bb702af0c9be10d4923 215 Gene3D G3DSA:1.20.144.10 122 215 9.6E-15 T 13-10-2018 RAM_02855 d7b12eec233f5bb702af0c9be10d4923 215 SMART SM00014 98 204 0.004 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RAM_02855 d7b12eec233f5bb702af0c9be10d4923 215 SUPERFAMILY SSF48317 21 213 2.88E-24 T 13-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily RAM_24320 a6730315de47c6b1b02ff85d9b99a200 365 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 269 284 5.8E-12 T 13-10-2018 RAM_24320 a6730315de47c6b1b02ff85d9b99a200 365 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 137 152 5.8E-12 T 13-10-2018 RAM_24320 a6730315de47c6b1b02ff85d9b99a200 365 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 284 300 5.8E-12 T 13-10-2018 RAM_24320 a6730315de47c6b1b02ff85d9b99a200 365 SUPERFAMILY SSF51905 1 342 8.87E-54 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_24320 a6730315de47c6b1b02ff85d9b99a200 365 Gene3D G3DSA:3.50.50.60 1 353 6.7E-81 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_24320 a6730315de47c6b1b02ff85d9b99a200 365 Pfam PF01494 FAD binding domain 1 330 2.9E-25 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_46260 f02e5a980b01aaad5198c8bd3e4c50d3 282 Gene3D G3DSA:3.20.10.10 118 280 1.2E-51 T 13-10-2018 RAM_46260 f02e5a980b01aaad5198c8bd3e4c50d3 282 SUPERFAMILY SSF56752 5 266 5.23E-56 T 13-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 RAM_46260 f02e5a980b01aaad5198c8bd3e4c50d3 282 Gene3D G3DSA:3.30.470.10 2 110 5.6E-32 T 13-10-2018 RAM_46260 f02e5a980b01aaad5198c8bd3e4c50d3 282 Pfam PF01063 Amino-transferase class IV 31 256 3.3E-42 T 13-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 RAM_39280 7463a0ae9092d7d7a1c8cfa0358c062c 507 Pfam PF00501 AMP-binding enzyme 13 406 2.7E-83 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_39280 7463a0ae9092d7d7a1c8cfa0358c062c 507 Gene3D G3DSA:3.40.50.12780 3 401 3.1E-95 T 13-10-2018 RAM_39280 7463a0ae9092d7d7a1c8cfa0358c062c 507 Pfam PF13193 AMP-binding enzyme C-terminal domain 415 488 1.6E-23 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_39280 7463a0ae9092d7d7a1c8cfa0358c062c 507 SUPERFAMILY SSF56801 7 500 3.14E-131 T 13-10-2018 RAM_39280 7463a0ae9092d7d7a1c8cfa0358c062c 507 Gene3D G3DSA:3.30.300.310 402 503 5.0E-36 T 13-10-2018 RAM_37160 a0e78392ae156be66c354f5c8fcbf840 219 SUPERFAMILY SSF46894 149 217 1.02E-19 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_37160 a0e78392ae156be66c354f5c8fcbf840 219 Gene3D G3DSA:3.40.50.12740 2 217 1.1E-63 T 13-10-2018 RAM_37160 a0e78392ae156be66c354f5c8fcbf840 219 SMART SM00421 155 212 6.6E-20 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_37160 a0e78392ae156be66c354f5c8fcbf840 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 158 172 1.6E-10 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_37160 a0e78392ae156be66c354f5c8fcbf840 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 172 188 1.6E-10 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_37160 a0e78392ae156be66c354f5c8fcbf840 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 188 200 1.6E-10 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_37160 a0e78392ae156be66c354f5c8fcbf840 219 SMART SM00448 2 117 3.9E-34 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_37160 a0e78392ae156be66c354f5c8fcbf840 219 ProSitePatterns PS00622 LuxR-type HTH domain signature. 172 199 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_37160 a0e78392ae156be66c354f5c8fcbf840 219 Pfam PF00196 Bacterial regulatory proteins, luxR family 157 212 1.6E-15 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_37160 a0e78392ae156be66c354f5c8fcbf840 219 Pfam PF00072 Response regulator receiver domain 4 117 2.0E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_37160 a0e78392ae156be66c354f5c8fcbf840 219 SUPERFAMILY SSF52172 1 134 2.7E-33 T 13-10-2018 IPR011006 CheY-like superfamily RAM_25890 7a22a80ae585db179e8a9328a0891c16 158 SMART SM00347 18 118 3.2E-16 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_25890 7a22a80ae585db179e8a9328a0891c16 158 Pfam PF01047 MarR family 25 82 7.4E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_25890 7a22a80ae585db179e8a9328a0891c16 158 SUPERFAMILY SSF46785 2 133 1.11E-27 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_25890 7a22a80ae585db179e8a9328a0891c16 158 Gene3D G3DSA:1.10.10.10 1 135 3.6E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_43870 60520307fce2c37e78ffdfde1b536bd4 548 SUPERFAMILY SSF52540 284 527 5.79E-27 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_43870 60520307fce2c37e78ffdfde1b536bd4 548 PRINTS PR00851 Xeroderma pigmentosum group B protein signature 456 474 2.7E-35 T 13-10-2018 RAM_43870 60520307fce2c37e78ffdfde1b536bd4 548 PRINTS PR00851 Xeroderma pigmentosum group B protein signature 291 311 2.7E-35 T 13-10-2018 RAM_43870 60520307fce2c37e78ffdfde1b536bd4 548 PRINTS PR00851 Xeroderma pigmentosum group B protein signature 356 378 2.7E-35 T 13-10-2018 RAM_43870 60520307fce2c37e78ffdfde1b536bd4 548 PRINTS PR00851 Xeroderma pigmentosum group B protein signature 191 213 2.7E-35 T 13-10-2018 RAM_43870 60520307fce2c37e78ffdfde1b536bd4 548 PRINTS PR00851 Xeroderma pigmentosum group B protein signature 475 500 2.7E-35 T 13-10-2018 RAM_43870 60520307fce2c37e78ffdfde1b536bd4 548 Pfam PF13625 Helicase conserved C-terminal domain 6 134 3.9E-45 T 13-10-2018 IPR032830 Helicase XPB/Ssl2, N-terminal domain Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167246|Reactome: R-HSA-427413|Reactome: R-HSA-5696395|Reactome: R-HSA-5696400|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-72086|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73863|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-77075 RAM_43870 60520307fce2c37e78ffdfde1b536bd4 548 Pfam PF16203 ERCC3/RAD25/XPB C-terminal helicase 353 540 6.7E-46 T 13-10-2018 IPR032438 ERCC3/RAD25/XPB helicase, C-terminal domain Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167246|Reactome: R-HSA-427413|Reactome: R-HSA-5696395|Reactome: R-HSA-5696400|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-72086|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73863|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-77075 RAM_43870 60520307fce2c37e78ffdfde1b536bd4 548 SMART SM00487 178 353 8.5E-23 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RAM_43870 60520307fce2c37e78ffdfde1b536bd4 548 Gene3D G3DSA:3.40.50.300 354 546 1.1E-47 T 13-10-2018 RAM_43870 60520307fce2c37e78ffdfde1b536bd4 548 Gene3D G3DSA:3.40.50.300 174 353 1.8E-36 T 13-10-2018 RAM_43870 60520307fce2c37e78ffdfde1b536bd4 548 Pfam PF04851 Type III restriction enzyme, res subunit 181 326 1.4E-13 T 13-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 RAM_43870 60520307fce2c37e78ffdfde1b536bd4 548 SMART SM00490 420 500 1.0E-10 T 13-10-2018 IPR001650 Helicase, C-terminal RAM_43870 60520307fce2c37e78ffdfde1b536bd4 548 SUPERFAMILY SSF52540 148 345 1.25E-31 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_14440 7e341d6bacfd5c2290de0370ebe4c2e9 217 Pfam PF00196 Bacterial regulatory proteins, luxR family 153 206 2.6E-18 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_14440 7e341d6bacfd5c2290de0370ebe4c2e9 217 Gene3D G3DSA:3.40.50.12740 3 213 2.4E-65 T 13-10-2018 RAM_14440 7e341d6bacfd5c2290de0370ebe4c2e9 217 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 167 183 1.8E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_14440 7e341d6bacfd5c2290de0370ebe4c2e9 217 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 183 195 1.8E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_14440 7e341d6bacfd5c2290de0370ebe4c2e9 217 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 153 167 1.8E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_14440 7e341d6bacfd5c2290de0370ebe4c2e9 217 ProSitePatterns PS00622 LuxR-type HTH domain signature. 167 194 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_14440 7e341d6bacfd5c2290de0370ebe4c2e9 217 SMART SM00448 3 117 2.7E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_14440 7e341d6bacfd5c2290de0370ebe4c2e9 217 Pfam PF00072 Response regulator receiver domain 5 118 3.7E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_14440 7e341d6bacfd5c2290de0370ebe4c2e9 217 SMART SM00421 150 207 1.6E-25 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_14440 7e341d6bacfd5c2290de0370ebe4c2e9 217 SUPERFAMILY SSF52172 3 129 5.55E-30 T 13-10-2018 IPR011006 CheY-like superfamily RAM_14440 7e341d6bacfd5c2290de0370ebe4c2e9 217 SUPERFAMILY SSF46894 143 213 1.02E-21 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_45680 413cce2f24a69c2d42e71dbb1713b398 237 SUPERFAMILY SSF53448 1 205 1.83E-31 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_45680 413cce2f24a69c2d42e71dbb1713b398 237 Gene3D G3DSA:3.90.550.10 1 236 1.6E-37 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_45680 413cce2f24a69c2d42e71dbb1713b398 237 Pfam PF00535 Glycosyl transferase family 2 3 121 8.8E-21 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RAM_33615 cebc232a9b1f338260c9a677eb1490eb 80 Gene3D G3DSA:1.20.1260.10 22 79 4.3E-5 T 13-10-2018 IPR012347 Ferritin-like RAM_23090 333cdb9b03b668ad6559aa20d92ff5e6 287 Gene3D G3DSA:3.40.630.30 42 267 2.5E-27 T 13-10-2018 RAM_23090 333cdb9b03b668ad6559aa20d92ff5e6 287 Pfam PF00583 Acetyltransferase (GNAT) family 161 260 1.3E-6 T 13-10-2018 IPR000182 GNAT domain RAM_23090 333cdb9b03b668ad6559aa20d92ff5e6 287 SUPERFAMILY SSF55729 84 260 3.95E-15 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_11165 38484ba8d117545f3d7d02aec5c9ae24 644 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 561 3.2E-134 T 13-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 RAM_11165 38484ba8d117545f3d7d02aec5c9ae24 644 Pfam PF00733 Asparagine synthase 253 623 1.7E-96 T 13-10-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 RAM_11165 38484ba8d117545f3d7d02aec5c9ae24 644 SUPERFAMILY SSF56235 2 231 1.89E-49 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RAM_11165 38484ba8d117545f3d7d02aec5c9ae24 644 SUPERFAMILY SSF52402 245 619 5.99E-79 T 13-10-2018 RAM_11165 38484ba8d117545f3d7d02aec5c9ae24 644 PIRSF PIRSF001589 1 637 8.0E-166 T 13-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 RAM_11165 38484ba8d117545f3d7d02aec5c9ae24 644 Pfam PF13537 Glutamine amidotransferase domain 50 172 6.5E-36 T 13-10-2018 IPR017932 Glutamine amidotransferase type 2 domain RAM_11165 38484ba8d117545f3d7d02aec5c9ae24 644 Gene3D G3DSA:3.60.20.10 4 194 8.2E-52 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RAM_14070 ff2c2efc8848f2a2de6f2ce04b80f1a1 464 SUPERFAMILY SSF53649 51 463 1.83E-118 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 RAM_14070 ff2c2efc8848f2a2de6f2ce04b80f1a1 464 Pfam PF00245 Alkaline phosphatase 61 420 1.0E-110 T 13-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RAM_14070 ff2c2efc8848f2a2de6f2ce04b80f1a1 464 SMART SM00098 62 464 8.5E-160 T 13-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RAM_14070 ff2c2efc8848f2a2de6f2ce04b80f1a1 464 PRINTS PR00113 Alkaline phosphatase signature 218 228 1.7E-36 T 13-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RAM_14070 ff2c2efc8848f2a2de6f2ce04b80f1a1 464 PRINTS PR00113 Alkaline phosphatase signature 313 342 1.7E-36 T 13-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RAM_14070 ff2c2efc8848f2a2de6f2ce04b80f1a1 464 PRINTS PR00113 Alkaline phosphatase signature 118 133 1.7E-36 T 13-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RAM_14070 ff2c2efc8848f2a2de6f2ce04b80f1a1 464 PRINTS PR00113 Alkaline phosphatase signature 155 175 1.7E-36 T 13-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RAM_14070 ff2c2efc8848f2a2de6f2ce04b80f1a1 464 PRINTS PR00113 Alkaline phosphatase signature 61 81 1.7E-36 T 13-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RAM_14070 ff2c2efc8848f2a2de6f2ce04b80f1a1 464 ProSitePatterns PS00123 Alkaline phosphatase active site. 118 126 - T 13-10-2018 IPR018299 Alkaline phosphatase, active site GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RAM_14070 ff2c2efc8848f2a2de6f2ce04b80f1a1 464 Gene3D G3DSA:3.40.720.10 27 464 4.1E-130 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 RAM_03790 c4c9c7c04e3f0ee5008e51d7c7668be7 153 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 9 137 8.9E-24 T 13-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 RAM_03790 c4c9c7c04e3f0ee5008e51d7c7668be7 153 Gene3D G3DSA:3.40.50.300 1 148 5.0E-33 T 13-10-2018 RAM_03790 c4c9c7c04e3f0ee5008e51d7c7668be7 153 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 7 129 2.5E-30 T 13-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 RAM_03790 c4c9c7c04e3f0ee5008e51d7c7668be7 153 SUPERFAMILY SSF52540 18 130 6.71E-16 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_03500 be69d0ffc15d8e70c295550ba981cf89 82 Pfam PF00831 Ribosomal L29 protein 10 66 2.5E-24 T 13-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_03500 be69d0ffc15d8e70c295550ba981cf89 82 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 7 66 16.458 T 13-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_03500 be69d0ffc15d8e70c295550ba981cf89 82 Gene3D G3DSA:1.10.287.310 8 71 3.1E-26 T 13-10-2018 RAM_03500 be69d0ffc15d8e70c295550ba981cf89 82 SUPERFAMILY SSF46561 8 69 3.14E-22 T 13-10-2018 IPR036049 Ribosomal protein L29/L35 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_03500 be69d0ffc15d8e70c295550ba981cf89 82 TIGRFAM TIGR00012 L29: ribosomal protein uL29 11 66 3.3E-19 T 13-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_44835 2063ce1db065634ba197698bc46ec28d 303 Pfam PF02569 Pantoate-beta-alanine ligase 16 283 2.1E-90 T 13-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 RAM_44835 2063ce1db065634ba197698bc46ec28d 303 Gene3D G3DSA:3.40.50.620 1 185 6.8E-73 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAM_44835 2063ce1db065634ba197698bc46ec28d 303 Gene3D G3DSA:3.30.1300.10 186 298 1.2E-35 T 13-10-2018 RAM_44835 2063ce1db065634ba197698bc46ec28d 303 Hamap MF_00158 Pantothenate synthetase [panC]. 12 285 37.604 T 13-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 RAM_44835 2063ce1db065634ba197698bc46ec28d 303 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 18 284 7.1E-82 T 13-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 RAM_44835 2063ce1db065634ba197698bc46ec28d 303 SUPERFAMILY SSF52374 10 287 1.88E-98 T 13-10-2018 RAM_04575 fc3ce06ee3433aa193dbc1612620bc23 397 SUPERFAMILY SSF55874 241 391 1.31E-32 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_04575 fc3ce06ee3433aa193dbc1612620bc23 397 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 286 392 7.0E-19 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_04575 fc3ce06ee3433aa193dbc1612620bc23 397 PRINTS PR00344 Bacterial sensor protein C-terminal signature 341 351 6.3E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_04575 fc3ce06ee3433aa193dbc1612620bc23 397 PRINTS PR00344 Bacterial sensor protein C-terminal signature 379 392 6.3E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_04575 fc3ce06ee3433aa193dbc1612620bc23 397 PRINTS PR00344 Bacterial sensor protein C-terminal signature 323 337 6.3E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_04575 fc3ce06ee3433aa193dbc1612620bc23 397 PRINTS PR00344 Bacterial sensor protein C-terminal signature 355 373 6.3E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_04575 fc3ce06ee3433aa193dbc1612620bc23 397 Gene3D G3DSA:3.30.565.10 245 393 1.7E-31 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_04575 fc3ce06ee3433aa193dbc1612620bc23 397 SMART SM00387 285 395 7.1E-29 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_04575 fc3ce06ee3433aa193dbc1612620bc23 397 Gene3D G3DSA:1.10.287.130 156 239 6.5E-15 T 13-10-2018 RAM_04575 fc3ce06ee3433aa193dbc1612620bc23 397 SMART SM00388 177 241 2.1E-7 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_04575 fc3ce06ee3433aa193dbc1612620bc23 397 SUPERFAMILY SSF47384 165 236 2.75E-11 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RAM_04575 fc3ce06ee3433aa193dbc1612620bc23 397 Pfam PF00512 His Kinase A (phospho-acceptor) domain 178 235 3.8E-10 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_04910 7c3652971aacaedce95e31fc8fc9696e 195 Pfam PF01872 RibD C-terminal domain 4 175 1.1E-12 T 13-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 RAM_04910 7c3652971aacaedce95e31fc8fc9696e 195 SUPERFAMILY SSF53597 4 194 8.84E-21 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RAM_04910 7c3652971aacaedce95e31fc8fc9696e 195 Gene3D G3DSA:3.40.430.10 1 193 1.9E-42 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RAM_42385 c908b417112d6c57881e3e47ffab80a5 325 SMART SM00382 33 217 6.3E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_42385 c908b417112d6c57881e3e47ffab80a5 325 Pfam PF13732 Domain of unknown function (DUF4162) 222 310 3.4E-11 T 13-10-2018 IPR025302 Domain of unknown function DUF4162 RAM_42385 c908b417112d6c57881e3e47ffab80a5 325 SUPERFAMILY SSF52540 17 232 1.64E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_42385 c908b417112d6c57881e3e47ffab80a5 325 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_42385 c908b417112d6c57881e3e47ffab80a5 325 Pfam PF00005 ABC transporter 25 167 1.3E-25 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_42385 c908b417112d6c57881e3e47ffab80a5 325 Gene3D G3DSA:3.40.50.300 8 255 2.5E-64 T 13-10-2018 RAM_27505 a5df32615cca197297dcd895d54e27d5 243 Gene3D G3DSA:3.40.50.1820 3 227 1.0E-44 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_27505 a5df32615cca197297dcd895d54e27d5 243 SUPERFAMILY SSF53474 8 222 2.46E-33 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_27505 a5df32615cca197297dcd895d54e27d5 243 Pfam PF00975 Thioesterase domain 18 209 2.5E-23 T 13-10-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 RAM_43935 a626ecbe07840c45721c3f05f56f8c18 417 Pfam PF05977 Transmembrane secretion effector 8 399 3.7E-29 T 13-10-2018 IPR010290 Transmembrane secretion effector RAM_43935 a626ecbe07840c45721c3f05f56f8c18 417 Gene3D G3DSA:1.20.1250.20 6 395 4.2E-37 T 13-10-2018 RAM_43935 a626ecbe07840c45721c3f05f56f8c18 417 SUPERFAMILY SSF103473 7 397 4.19E-40 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_05295 d12b32d9896e642b6b4d12eba1503c47 261 SUPERFAMILY SSF102405 48 250 3.21E-63 T 13-10-2018 RAM_05295 d12b32d9896e642b6b4d12eba1503c47 261 Pfam PF03641 Possible lysine decarboxylase 120 248 7.5E-33 T 13-10-2018 IPR031100 LOG family RAM_05295 d12b32d9896e642b6b4d12eba1503c47 261 Gene3D G3DSA:3.40.50.450 49 261 3.5E-68 T 13-10-2018 RAM_05295 d12b32d9896e642b6b4d12eba1503c47 261 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 78 252 2.0E-43 T 13-10-2018 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG RAM_36315 8bbd7d974aedf587da533041a1890074 440 SUPERFAMILY SSF53187 46 416 1.65E-53 T 13-10-2018 RAM_36315 8bbd7d974aedf587da533041a1890074 440 SUPERFAMILY SSF55031 204 311 3.27E-23 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain RAM_36315 8bbd7d974aedf587da533041a1890074 440 PIRSF PIRSF037226 36 433 1.5E-121 T 13-10-2018 IPR017144 Peptidase M20A, amidohydrolase, predicted RAM_36315 8bbd7d974aedf587da533041a1890074 440 Gene3D G3DSA:3.40.630.10 59 402 7.8E-117 T 13-10-2018 RAM_36315 8bbd7d974aedf587da533041a1890074 440 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 58 388 8.9E-73 T 13-10-2018 IPR017439 Amidohydrolase GO:0016787 RAM_36315 8bbd7d974aedf587da533041a1890074 440 Pfam PF07687 Peptidase dimerisation domain 207 299 5.4E-9 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain RAM_36315 8bbd7d974aedf587da533041a1890074 440 Gene3D G3DSA:3.30.70.360 204 322 7.8E-117 T 13-10-2018 RAM_33745 cd27a45321297c43cd608f2a8881381d 404 SMART SM00829 8 400 3.8E-4 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_33745 cd27a45321297c43cd608f2a8881381d 404 Gene3D G3DSA:3.40.50.720 169 362 8.6E-112 T 13-10-2018 RAM_33745 cd27a45321297c43cd608f2a8881381d 404 SUPERFAMILY SSF50129 2 196 2.36E-57 T 13-10-2018 IPR011032 GroES-like superfamily RAM_33745 cd27a45321297c43cd608f2a8881381d 404 Pfam PF13823 Alcohol dehydrogenase GroES-associated 2 23 1.2E-9 T 13-10-2018 IPR027399 Alcohol dehydrogenase GroES-associated RAM_33745 cd27a45321297c43cd608f2a8881381d 404 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 142 4.2E-27 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_33745 cd27a45321297c43cd608f2a8881381d 404 Pfam PF00107 Zinc-binding dehydrogenase 190 258 1.6E-11 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RAM_33745 cd27a45321297c43cd608f2a8881381d 404 SUPERFAMILY SSF51735 156 363 5.26E-53 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_33745 cd27a45321297c43cd608f2a8881381d 404 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 59 73 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 RAM_33745 cd27a45321297c43cd608f2a8881381d 404 Gene3D G3DSA:3.90.180.10 4 390 8.6E-112 T 13-10-2018 RAM_14525 e8843abf9f61f23ffca899f79f603b57 116 Pfam PF03793 PASTA domain 44 109 4.7E-8 T 13-10-2018 IPR005543 PASTA domain RAM_14525 e8843abf9f61f23ffca899f79f603b57 116 Gene3D G3DSA:3.30.10.20 39 110 1.2E-15 T 13-10-2018 RAM_42450 2a91026d1e7339b8bea1b60194c76a51 200 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 62 7.3E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_42450 2a91026d1e7339b8bea1b60194c76a51 200 ProDom PD007457 TRANSFERASE ADENOSYLTRANSFERASE COBALAMIN ATP:COBIALAMIN ADENOSYLTRANSFERASE PDUO TYPE RELATED ACIDURIA YVQK 60 120 0.009 T 13-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 RAM_42450 2a91026d1e7339b8bea1b60194c76a51 200 Gene3D G3DSA:1.10.10.60 4 53 9.0E-19 T 13-10-2018 RAM_42450 2a91026d1e7339b8bea1b60194c76a51 200 Gene3D G3DSA:1.10.357.10 54 198 7.3E-36 T 13-10-2018 RAM_42450 2a91026d1e7339b8bea1b60194c76a51 200 SUPERFAMILY SSF46689 9 75 3.28E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_42450 2a91026d1e7339b8bea1b60194c76a51 200 SUPERFAMILY SSF48498 84 195 1.33E-19 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_40805 0234b88c28717890f0279bca8e34c420 371 PIRSF PIRSF000183 1 371 1.4E-164 T 13-10-2018 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1 RAM_40805 0234b88c28717890f0279bca8e34c420 371 SUPERFAMILY SSF52283 2 358 4.17E-65 T 13-10-2018 RAM_40805 0234b88c28717890f0279bca8e34c420 371 Gene3D G3DSA:3.40.50.720 130 305 4.2E-139 T 13-10-2018 RAM_40805 0234b88c28717890f0279bca8e34c420 371 Gene3D G3DSA:3.40.50.720 3 352 4.2E-139 T 13-10-2018 RAM_40805 0234b88c28717890f0279bca8e34c420 371 TIGRFAM TIGR00518 alaDH: alanine dehydrogenase 2 370 5.0E-171 T 13-10-2018 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1 RAM_40805 0234b88c28717890f0279bca8e34c420 371 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 141 352 6.2E-83 T 13-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain RAM_40805 0234b88c28717890f0279bca8e34c420 371 SMART SM01002 149 297 1.3E-85 T 13-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain RAM_40805 0234b88c28717890f0279bca8e34c420 371 SMART SM01003 4 137 4.2E-77 T 13-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal RAM_40805 0234b88c28717890f0279bca8e34c420 371 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 5 137 2.7E-47 T 13-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal RAM_40805 0234b88c28717890f0279bca8e34c420 371 SUPERFAMILY SSF51735 137 303 8.87E-48 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_18160 9381aeb877263dd466e67a58594b2eb5 454 SUPERFAMILY SSF52540 16 254 3.78E-12 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_18160 9381aeb877263dd466e67a58594b2eb5 454 Gene3D G3DSA:3.40.50.300 14 182 1.1E-5 T 13-10-2018 RAM_19925 2d61339396998b0bff6322007ccb2ea7 577 Gene3D G3DSA:2.60.40.10 59 145 3.4E-13 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_19925 2d61339396998b0bff6322007ccb2ea7 577 SUPERFAMILY SSF49265 60 243 1.41E-15 T 13-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 RAM_19925 2d61339396998b0bff6322007ccb2ea7 577 Pfam PF07995 Glucose / Sorbosone dehydrogenase 262 555 1.0E-64 T 13-10-2018 IPR012938 Glucose/Sorbosone dehydrogenase RAM_19925 2d61339396998b0bff6322007ccb2ea7 577 SMART SM00060 157 233 1.5E-9 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 RAM_19925 2d61339396998b0bff6322007ccb2ea7 577 SMART SM00060 62 136 17.0 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 RAM_19925 2d61339396998b0bff6322007ccb2ea7 577 SUPERFAMILY SSF50952 254 555 4.32E-38 T 13-10-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 RAM_19925 2d61339396998b0bff6322007ccb2ea7 577 Gene3D G3DSA:2.120.10.30 235 576 3.0E-109 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RAM_19925 2d61339396998b0bff6322007ccb2ea7 577 Gene3D G3DSA:2.60.40.10 157 234 1.0E-8 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_19925 2d61339396998b0bff6322007ccb2ea7 577 Pfam PF00041 Fibronectin type III domain 160 229 6.4E-7 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 RAM_41410 3dfd3722ef451846194d6efc440025b2 333 SUPERFAMILY SSF56655 1 307 2.14E-110 T 13-10-2018 RAM_41410 3dfd3722ef451846194d6efc440025b2 333 Gene3D G3DSA:3.40.190.90 117 278 5.6E-133 T 13-10-2018 RAM_41410 3dfd3722ef451846194d6efc440025b2 333 Pfam PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded 1 304 1.5E-141 T 13-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 RAM_41410 3dfd3722ef451846194d6efc440025b2 333 TIGRFAM TIGR00330 glpX: fructose-1,6-bisphosphatase, class II 1 308 7.9E-114 T 13-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 RAM_41410 3dfd3722ef451846194d6efc440025b2 333 PIRSF PIRSF004532 1 315 2.6E-147 T 13-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 RAM_41410 3dfd3722ef451846194d6efc440025b2 333 Gene3D G3DSA:3.30.540.10 1 304 5.6E-133 T 13-10-2018 RAM_28845 35def531c6d3f06d5da9c05df20c191f 240 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 180 0.0016 T 13-10-2018 RAM_28845 35def531c6d3f06d5da9c05df20c191f 240 SUPERFAMILY SSF51735 1 237 2.19E-46 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_28845 35def531c6d3f06d5da9c05df20c191f 240 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 235 3.2E-35 T 13-10-2018 RAM_28845 35def531c6d3f06d5da9c05df20c191f 240 Gene3D G3DSA:3.40.50.720 2 238 6.6E-45 T 13-10-2018 RAM_28845 35def531c6d3f06d5da9c05df20c191f 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 120 136 3.5E-20 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_28845 35def531c6d3f06d5da9c05df20c191f 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 3.5E-20 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_28845 35def531c6d3f06d5da9c05df20c191f 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 75 86 3.5E-20 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_28845 35def531c6d3f06d5da9c05df20c191f 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 182 3.5E-20 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_28845 35def531c6d3f06d5da9c05df20c191f 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 202 222 3.5E-20 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_28845 35def531c6d3f06d5da9c05df20c191f 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 3.5E-20 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_29585 94010736f0fe03cf154bc58b9346ee39 727 SUPERFAMILY SSF52540 37 304 6.74E-18 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_29585 94010736f0fe03cf154bc58b9346ee39 727 PRINTS PR00364 Disease resistance protein signature 129 143 6.1E-7 T 13-10-2018 RAM_29585 94010736f0fe03cf154bc58b9346ee39 727 PRINTS PR00364 Disease resistance protein signature 62 77 6.1E-7 T 13-10-2018 RAM_29585 94010736f0fe03cf154bc58b9346ee39 727 PRINTS PR00364 Disease resistance protein signature 241 255 6.1E-7 T 13-10-2018 RAM_29585 94010736f0fe03cf154bc58b9346ee39 727 Gene3D G3DSA:1.25.40.10 502 702 2.2E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_29585 94010736f0fe03cf154bc58b9346ee39 727 SUPERFAMILY SSF48452 479 668 2.59E-7 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_29585 94010736f0fe03cf154bc58b9346ee39 727 Gene3D G3DSA:3.40.50.300 28 180 4.5E-18 T 13-10-2018 RAM_21165 db0e02aaa2a43eabdcd1d3fd4cc33a06 168 Pfam PF12724 Flavodoxin domain 5 124 3.1E-23 T 13-10-2018 IPR026816 Flavodoxin domain RAM_21165 db0e02aaa2a43eabdcd1d3fd4cc33a06 168 Gene3D G3DSA:3.40.50.360 4 120 2.4E-14 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RAM_21165 db0e02aaa2a43eabdcd1d3fd4cc33a06 168 SUPERFAMILY SSF52218 1 96 7.71E-15 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RAM_09545 1d099d170939003b1a205e6d53e2ba62 620 SUPERFAMILY SSF52518 7 218 2.33E-32 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_09545 1d099d170939003b1a205e6d53e2ba62 620 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 443 579 1.2E-24 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RAM_09545 1d099d170939003b1a205e6d53e2ba62 620 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 227 358 4.5E-29 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 RAM_09545 1d099d170939003b1a205e6d53e2ba62 620 SUPERFAMILY SSF52518 400 588 4.98E-35 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_09545 1d099d170939003b1a205e6d53e2ba62 620 Gene3D G3DSA:3.40.50.970 394 592 1.8E-32 T 13-10-2018 RAM_09545 1d099d170939003b1a205e6d53e2ba62 620 Gene3D G3DSA:3.40.50.970 6 211 1.8E-32 T 13-10-2018 RAM_09545 1d099d170939003b1a205e6d53e2ba62 620 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 13 203 4.8E-36 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RAM_09545 1d099d170939003b1a205e6d53e2ba62 620 TIGRFAM TIGR04377 myo_inos_iolD: 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase 11 599 1.0E-246 T 13-10-2018 IPR030817 3,5/4-Trihydroxycyclohexa-1,2-dione hydrolase GO:0016823|GO:0019310|GO:0030976 KEGG: 00562+3.7.1.22 RAM_09545 1d099d170939003b1a205e6d53e2ba62 620 SUPERFAMILY SSF52467 188 389 2.58E-43 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily RAM_09545 1d099d170939003b1a205e6d53e2ba62 620 Gene3D G3DSA:3.40.50.1220 221 392 9.8E-39 T 13-10-2018 RAM_12965 e390a61d3f204481dce79b5a7054b1c3 408 Gene3D G3DSA:1.10.630.10 3 408 4.5E-125 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_12965 e390a61d3f204481dce79b5a7054b1c3 408 SUPERFAMILY SSF48264 11 405 4.58E-78 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_12965 e390a61d3f204481dce79b5a7054b1c3 408 Pfam PF00067 Cytochrome P450 287 375 1.4E-13 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_12965 e390a61d3f204481dce79b5a7054b1c3 408 PRINTS PR00359 B-class P450 signature 350 359 3.3E-45 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_12965 e390a61d3f204481dce79b5a7054b1c3 408 PRINTS PR00359 B-class P450 signature 204 226 3.3E-45 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_12965 e390a61d3f204481dce79b5a7054b1c3 408 PRINTS PR00359 B-class P450 signature 283 294 3.3E-45 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_12965 e390a61d3f204481dce79b5a7054b1c3 408 PRINTS PR00359 B-class P450 signature 165 180 3.3E-45 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_12965 e390a61d3f204481dce79b5a7054b1c3 408 PRINTS PR00359 B-class P450 signature 359 370 3.3E-45 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_12965 e390a61d3f204481dce79b5a7054b1c3 408 PRINTS PR00359 B-class P450 signature 102 113 3.3E-45 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_12965 e390a61d3f204481dce79b5a7054b1c3 408 PRINTS PR00359 B-class P450 signature 148 164 3.3E-45 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_12965 e390a61d3f204481dce79b5a7054b1c3 408 PRINTS PR00359 B-class P450 signature 300 327 3.3E-45 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_12965 e390a61d3f204481dce79b5a7054b1c3 408 PRINTS PR00359 B-class P450 signature 328 343 3.3E-45 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_18075 51bebc0386d7ed2574ff7987027d5980 586 Pfam PF07287 Acyclic terpene utilisation family protein AtuA 7 359 3.5E-119 T 13-10-2018 IPR010839 Acyclic terpene utilisation RAM_22150 8ea4a4124edb003f027c01b96d83e2fa 269 SUPERFAMILY SSF53335 14 251 2.11E-39 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_22150 8ea4a4124edb003f027c01b96d83e2fa 269 Gene3D G3DSA:3.40.50.150 1 268 2.6E-98 T 13-10-2018 RAM_22150 8ea4a4124edb003f027c01b96d83e2fa 269 PIRSF PIRSF017393 1 269 1.6E-83 T 13-10-2018 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type RAM_22150 8ea4a4124edb003f027c01b96d83e2fa 269 Pfam PF04672 S-adenosyl methyltransferase 4 269 8.4E-81 T 13-10-2018 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type RAM_28315 b699c1de58532b84989048cd2aa1385b 67 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 13 57 3.0E-10 T 13-10-2018 IPR013752 Ketopantoate reductase, C-terminal domain RAM_28315 b699c1de58532b84989048cd2aa1385b 67 Gene3D G3DSA:1.10.1040.10 2 66 2.2E-11 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RAM_28315 b699c1de58532b84989048cd2aa1385b 67 SUPERFAMILY SSF48179 11 59 3.74E-11 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RAM_13545 70d14e4b99e8b7da9f3043b384f0801d 80 ProDom PD062385 SCO7189 RV0898C/MT0921.1 MB0922C 5 80 5.0E-12 T 13-10-2018 IPR020311 Uncharacterised protein family, Rv0898c RAM_13545 70d14e4b99e8b7da9f3043b384f0801d 80 Pfam PF10944 Protein of unknown function (DUF2630) 3 80 3.3E-33 T 13-10-2018 IPR020311 Uncharacterised protein family, Rv0898c RAM_15335 e214b1dd297df64d354fb469d25d04d0 462 Gene3D G3DSA:3.90.1150.170 36 452 7.6E-119 T 13-10-2018 RAM_15335 e214b1dd297df64d354fb469d25d04d0 462 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 67 397 6.9E-41 T 13-10-2018 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 RAM_15335 e214b1dd297df64d354fb469d25d04d0 462 Gene3D G3DSA:3.40.640.10 101 343 7.6E-119 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_15335 e214b1dd297df64d354fb469d25d04d0 462 SUPERFAMILY SSF53383 40 459 4.08E-101 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_15335 e214b1dd297df64d354fb469d25d04d0 462 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 74 93 2.8E-5 T 13-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 RAM_15335 e214b1dd297df64d354fb469d25d04d0 462 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 113 132 2.8E-5 T 13-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 RAM_15335 e214b1dd297df64d354fb469d25d04d0 462 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 338 353 2.8E-5 T 13-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 RAM_15335 e214b1dd297df64d354fb469d25d04d0 462 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 381 400 2.8E-5 T 13-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 RAM_44185 daf08df7c191851061266bedc227cd11 514 Gene3D G3DSA:2.30.38.10 303 410 7.3E-33 T 13-10-2018 RAM_44185 daf08df7c191851061266bedc227cd11 514 SUPERFAMILY SSF56801 16 506 1.57E-137 T 13-10-2018 RAM_44185 daf08df7c191851061266bedc227cd11 514 Pfam PF13193 AMP-binding enzyme C-terminal domain 419 494 1.4E-18 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_44185 daf08df7c191851061266bedc227cd11 514 TIGRFAM TIGR02262 benz_CoA_lig: benzoate-CoA ligase family 5 502 1.4E-147 T 13-10-2018 IPR011957 Benzoate-CoA ligase family GO:0005524|GO:0016405 RAM_44185 daf08df7c191851061266bedc227cd11 514 Gene3D G3DSA:3.40.50.980 3 232 3.0E-59 T 13-10-2018 RAM_44185 daf08df7c191851061266bedc227cd11 514 Gene3D G3DSA:1.10.10.2900 234 302 1.4E-19 T 13-10-2018 RAM_44185 daf08df7c191851061266bedc227cd11 514 Gene3D G3DSA:3.30.300.310 411 509 6.3E-29 T 13-10-2018 RAM_44185 daf08df7c191851061266bedc227cd11 514 Pfam PF00501 AMP-binding enzyme 16 410 1.9E-88 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_41730 199ff1c20d1392ce1f321c34fb991bf5 301 SUPERFAMILY SSF161098 57 288 8.9E-57 T 13-10-2018 IPR035906 MetI-like superfamily RAM_41730 199ff1c20d1392ce1f321c34fb991bf5 301 Gene3D G3DSA:1.10.3720.10 54 300 5.0E-65 T 13-10-2018 IPR035906 MetI-like superfamily RAM_41730 199ff1c20d1392ce1f321c34fb991bf5 301 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 83 297 1.4E-14 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_15785 d074a37c7513ecbdcb8c558e1f702139 440 Pfam PF00144 Beta-lactamase 17 320 3.7E-44 T 13-10-2018 IPR001466 Beta-lactamase-related RAM_15785 d074a37c7513ecbdcb8c558e1f702139 440 SUPERFAMILY SSF56601 14 331 1.88E-58 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_15785 d074a37c7513ecbdcb8c558e1f702139 440 Gene3D G3DSA:3.40.710.10 11 329 9.2E-63 T 13-10-2018 RAM_42210 be813b46e1f847f1fe0b7106e498c02c 1184 SMART SM00982 1031 1129 1.5E-36 T 13-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 RAM_42210 be813b46e1f847f1fe0b7106e498c02c 1184 Pfam PF00271 Helicase conserved C-terminal domain 832 931 1.0E-13 T 13-10-2018 IPR001650 Helicase, C-terminal RAM_42210 be813b46e1f847f1fe0b7106e498c02c 1184 SUPERFAMILY SSF52540 33 362 7.12E-69 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_42210 be813b46e1f847f1fe0b7106e498c02c 1184 SMART SM00487 622 814 1.3E-29 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RAM_42210 be813b46e1f847f1fe0b7106e498c02c 1184 Pfam PF03461 TRCF domain 1032 1113 3.4E-24 T 13-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 RAM_42210 be813b46e1f847f1fe0b7106e498c02c 1184 SUPERFAMILY SSF141259 490 570 1.96E-18 T 13-10-2018 IPR036101 CarD-like/TRCF domain superfamily RAM_42210 be813b46e1f847f1fe0b7106e498c02c 1184 Gene3D G3DSA:3.40.50.300 564 803 6.1E-229 T 13-10-2018 RAM_42210 be813b46e1f847f1fe0b7106e498c02c 1184 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 39 1128 27.404 T 13-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 RAM_42210 be813b46e1f847f1fe0b7106e498c02c 1184 Gene3D G3DSA:3.90.1150.50 1027 1149 2.9E-25 T 13-10-2018 IPR037235 TRCF-like, C-terminal domain RAM_42210 be813b46e1f847f1fe0b7106e498c02c 1184 Gene3D G3DSA:2.30.30.840 501 563 6.1E-229 T 13-10-2018 RAM_42210 be813b46e1f847f1fe0b7106e498c02c 1184 SUPERFAMILY SSF52540 373 470 3.72E-6 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_42210 be813b46e1f847f1fe0b7106e498c02c 1184 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 157 1104 0.0 T 13-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 RAM_42210 be813b46e1f847f1fe0b7106e498c02c 1184 Gene3D G3DSA:3.40.50.11180 50 308 4.4E-59 T 13-10-2018 RAM_42210 be813b46e1f847f1fe0b7106e498c02c 1184 SMART SM01058 497 598 5.7E-47 T 13-10-2018 IPR003711 CarD-like/TRCF domain RAM_42210 be813b46e1f847f1fe0b7106e498c02c 1184 SUPERFAMILY SSF52540 548 805 3.87E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_42210 be813b46e1f847f1fe0b7106e498c02c 1184 Gene3D G3DSA:3.40.50.300 498 1010 6.1E-229 T 13-10-2018 RAM_42210 be813b46e1f847f1fe0b7106e498c02c 1184 Pfam PF02559 CarD-like/TRCF domain 498 597 4.1E-31 T 13-10-2018 IPR003711 CarD-like/TRCF domain RAM_42210 be813b46e1f847f1fe0b7106e498c02c 1184 SMART SM00490 848 932 3.9E-16 T 13-10-2018 IPR001650 Helicase, C-terminal RAM_42210 be813b46e1f847f1fe0b7106e498c02c 1184 SUPERFAMILY SSF52540 804 1012 1.42E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_42210 be813b46e1f847f1fe0b7106e498c02c 1184 Gene3D G3DSA:3.30.2060.10 141 227 4.4E-59 T 13-10-2018 RAM_42210 be813b46e1f847f1fe0b7106e498c02c 1184 Pfam PF00270 DEAD/DEAH box helicase 647 788 2.9E-17 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RAM_42210 be813b46e1f847f1fe0b7106e498c02c 1184 SUPERFAMILY SSF143517 1021 1178 2.62E-34 T 13-10-2018 IPR037235 TRCF-like, C-terminal domain RAM_46340 59aab68a3e43e13cc51b07ad16663b9d 508 PIRSF PIRSF000485 16 479 3.3E-158 T 13-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 RAM_46340 59aab68a3e43e13cc51b07ad16663b9d 508 Pfam PF13522 Glutamine amidotransferase domain 77 220 1.1E-16 T 13-10-2018 RAM_46340 59aab68a3e43e13cc51b07ad16663b9d 508 SUPERFAMILY SSF53271 261 475 9.7E-67 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like RAM_46340 59aab68a3e43e13cc51b07ad16663b9d 508 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 20 467 2.2E-157 T 13-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 RAM_46340 59aab68a3e43e13cc51b07ad16663b9d 508 SUPERFAMILY SSF56235 20 278 1.63E-62 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RAM_46340 59aab68a3e43e13cc51b07ad16663b9d 508 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 19 466 45.682 T 13-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 RAM_46340 59aab68a3e43e13cc51b07ad16663b9d 508 Gene3D G3DSA:3.60.20.10 20 468 4.1E-147 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RAM_46340 59aab68a3e43e13cc51b07ad16663b9d 508 Gene3D G3DSA:3.40.50.2020 285 449 4.1E-147 T 13-10-2018 RAM_16825 2e51ebc69c93a617a3ce676bf33a109c 415 Pfam PF06772 Bacterial low temperature requirement A protein (LtrA) 10 374 5.2E-71 T 13-10-2018 IPR010640 Low temperature requirement A RAM_39265 1abe10516a1d18bc187396ae11a2473c 273 TIGRFAM TIGR03620 F420_MSMEG_4141: probable F420-dependent oxidoreductase, MSMEG_4141 family 8 272 8.0E-97 T 13-10-2018 IPR019922 Luciferase-like, F420-dependent oxidoreductase, MSMEG4141, predicted RAM_39265 1abe10516a1d18bc187396ae11a2473c 273 SUPERFAMILY SSF51679 13 271 2.86E-32 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_39265 1abe10516a1d18bc187396ae11a2473c 273 Gene3D G3DSA:3.20.20.30 115 267 7.2E-10 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_39265 1abe10516a1d18bc187396ae11a2473c 273 Pfam PF00296 Luciferase-like monooxygenase 14 104 7.2E-10 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_39265 1abe10516a1d18bc187396ae11a2473c 273 Gene3D G3DSA:3.20.20.30 1 114 2.2E-11 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_21900 3c00e1dba45d940cfc68356013427bd4 364 Hamap MF_01609 Glutamate--cysteine ligase [gshA]. 1 364 69.048 T 13-10-2018 IPR011793 Putative glutamate--cysteine ligase YbdK GO:0016879 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 RAM_21900 3c00e1dba45d940cfc68356013427bd4 364 TIGRFAM TIGR02050 gshA_cyan_rel: carboxylate-amine ligase, YbdK family 10 290 1.6E-75 T 13-10-2018 IPR011793 Putative glutamate--cysteine ligase YbdK GO:0016879 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 RAM_21900 3c00e1dba45d940cfc68356013427bd4 364 SUPERFAMILY SSF55931 5 361 1.86E-83 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 RAM_21900 3c00e1dba45d940cfc68356013427bd4 364 Gene3D G3DSA:3.30.590.20 4 363 3.5E-108 T 13-10-2018 RAM_21900 3c00e1dba45d940cfc68356013427bd4 364 Pfam PF04107 Glutamate-cysteine ligase family 2(GCS2) 11 271 4.5E-46 T 13-10-2018 IPR006336 Glutamate--cysteine ligase, GCS2 GO:0004357|GO:0042398 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 RAM_30840 daf38ff1e0b27f3437bcfe2d63adf8b1 524 Pfam PF00117 Glutamine amidotransferase class-I 270 502 1.8E-49 T 13-10-2018 IPR017926 Glutamine amidotransferase RAM_30840 daf38ff1e0b27f3437bcfe2d63adf8b1 524 SUPERFAMILY SSF52540 1 235 2.02E-101 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_30840 daf38ff1e0b27f3437bcfe2d63adf8b1 524 Gene3D G3DSA:3.40.50.300 1 254 1.9E-114 T 13-10-2018 RAM_30840 daf38ff1e0b27f3437bcfe2d63adf8b1 524 Pfam PF06418 CTP synthase N-terminus 1 235 4.1E-104 T 13-10-2018 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 RAM_30840 daf38ff1e0b27f3437bcfe2d63adf8b1 524 TIGRFAM TIGR00337 PyrG: CTP synthase 2 502 2.0E-213 T 13-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 RAM_30840 daf38ff1e0b27f3437bcfe2d63adf8b1 524 SUPERFAMILY SSF52317 259 506 2.37E-75 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_30840 daf38ff1e0b27f3437bcfe2d63adf8b1 524 Gene3D G3DSA:3.40.50.880 255 510 5.1E-101 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_35410 d12d574e77e1af3fce2d6a37409346de 258 Gene3D G3DSA:2.60.120.200 43 258 2.1E-14 T 13-10-2018 RAM_35410 d12d574e77e1af3fce2d6a37409346de 258 Pfam PF14099 Polysaccharide lyase 115 240 1.1E-9 T 13-10-2018 IPR025975 Polysaccharide lyase MetaCyc: PWY-7644 RAM_18675 c985032e720bbf073a19927f03459374 135 SUPERFAMILY SSF53474 3 121 1.85E-21 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_18675 c985032e720bbf073a19927f03459374 135 Gene3D G3DSA:3.40.50.1820 2 135 1.2E-22 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_18675 c985032e720bbf073a19927f03459374 135 Pfam PF00561 alpha/beta hydrolase fold 4 112 5.5E-13 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_27330 176c3226ceb1ca5d2c78af76f66d516f 330 SUPERFAMILY SSF56317 42 304 3.92E-33 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily RAM_27330 176c3226ceb1ca5d2c78af76f66d516f 330 Gene3D G3DSA:3.60.110.10 42 315 2.9E-31 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily RAM_27330 176c3226ceb1ca5d2c78af76f66d516f 330 Pfam PF00795 Carbon-nitrogen hydrolase 70 293 1.9E-14 T 13-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 RAM_40950 8e4f8c859aa84fd011c72c27240c80f5 160 Gene3D G3DSA:3.40.630.30 4 158 2.0E-45 T 13-10-2018 RAM_40950 8e4f8c859aa84fd011c72c27240c80f5 160 SUPERFAMILY SSF55729 5 148 1.58E-34 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_40950 8e4f8c859aa84fd011c72c27240c80f5 160 Pfam PF00583 Acetyltransferase (GNAT) family 39 136 8.9E-17 T 13-10-2018 IPR000182 GNAT domain RAM_11530 2d244534196485bda54a3594cd5ccea1 153 Pfam PF00293 NUDIX domain 19 133 2.3E-9 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RAM_11530 2d244534196485bda54a3594cd5ccea1 153 SUPERFAMILY SSF55811 11 135 7.99E-19 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RAM_11530 2d244534196485bda54a3594cd5ccea1 153 Gene3D G3DSA:3.90.79.10 10 152 1.2E-21 T 13-10-2018 RAM_11530 2d244534196485bda54a3594cd5ccea1 153 ProSitePatterns PS00893 Nudix box signature. 50 71 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RAM_19255 e9ca875e534d5cc4c3b7ef72d40027bb 174 Pfam PF01106 NifU-like domain 89 149 2.6E-8 T 13-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 RAM_19255 e9ca875e534d5cc4c3b7ef72d40027bb 174 Gene3D G3DSA:3.30.300.130 82 155 8.1E-12 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily RAM_19255 e9ca875e534d5cc4c3b7ef72d40027bb 174 SUPERFAMILY SSF117916 80 153 1.42E-8 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily RAM_15260 d51f737f2aab890e1d08099d32ebb58a 455 SUPERFAMILY SSF53300 283 414 9.45E-6 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RAM_15260 d51f737f2aab890e1d08099d32ebb58a 455 PIRSF PIRSF010256 1 455 2.2E-112 T 13-10-2018 IPR011195 Uncharacterised conserved protein UCP010256 RAM_15260 d51f737f2aab890e1d08099d32ebb58a 455 Pfam PF05762 VWA domain containing CoxE-like protein 227 447 2.9E-49 T 13-10-2018 IPR008912 Uncharacterised protein family CoxE-like RAM_06805 11af66302bf91a78e9b76571acbc9bf7 426 SUPERFAMILY SSF51735 1 160 4.1E-40 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_06805 11af66302bf91a78e9b76571acbc9bf7 426 Gene3D G3DSA:3.90.110.10 161 425 1.5E-77 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 RAM_06805 11af66302bf91a78e9b76571acbc9bf7 426 Gene3D G3DSA:3.40.50.720 1 160 3.1E-46 T 13-10-2018 RAM_06805 11af66302bf91a78e9b76571acbc9bf7 426 SUPERFAMILY SSF56327 161 423 3.21E-64 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 RAM_06805 11af66302bf91a78e9b76571acbc9bf7 426 ProSitePatterns PS01324 Glycosyl hydrolases family 4 signature. 132 162 - T 13-10-2018 IPR019802 Glycoside hydrolase, family 4, conserved site GO:0004553|GO:0005975 RAM_06805 11af66302bf91a78e9b76571acbc9bf7 426 Pfam PF02056 Family 4 glycosyl hydrolase 25 177 2.5E-39 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RAM_06805 11af66302bf91a78e9b76571acbc9bf7 426 PRINTS PR00732 Glycosyl hydrolase family 4 signature 2 17 1.8E-36 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RAM_06805 11af66302bf91a78e9b76571acbc9bf7 426 PRINTS PR00732 Glycosyl hydrolase family 4 signature 183 195 1.8E-36 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RAM_06805 11af66302bf91a78e9b76571acbc9bf7 426 PRINTS PR00732 Glycosyl hydrolase family 4 signature 132 149 1.8E-36 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RAM_06805 11af66302bf91a78e9b76571acbc9bf7 426 PRINTS PR00732 Glycosyl hydrolase family 4 signature 89 102 1.8E-36 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RAM_06805 11af66302bf91a78e9b76571acbc9bf7 426 PRINTS PR00732 Glycosyl hydrolase family 4 signature 68 84 1.8E-36 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RAM_06805 11af66302bf91a78e9b76571acbc9bf7 426 PRINTS PR00732 Glycosyl hydrolase family 4 signature 103 123 1.8E-36 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RAM_06805 11af66302bf91a78e9b76571acbc9bf7 426 PRINTS PR00732 Glycosyl hydrolase family 4 signature 157 168 1.8E-36 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RAM_06805 11af66302bf91a78e9b76571acbc9bf7 426 Pfam PF11975 Family 4 glycosyl hydrolase C-terminal domain 187 402 1.1E-45 T 13-10-2018 IPR022616 Glycosyl hydrolase, family 4, C-terminal GO:0004553 RAM_43320 9e8a4dd91cee0305b68570e9fce0df4d 274 Pfam PF00753 Metallo-beta-lactamase superfamily 31 218 1.1E-19 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_43320 9e8a4dd91cee0305b68570e9fce0df4d 274 Gene3D G3DSA:3.60.15.10 1 274 1.0E-53 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_43320 9e8a4dd91cee0305b68570e9fce0df4d 274 SUPERFAMILY SSF56281 1 264 1.09E-31 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_43320 9e8a4dd91cee0305b68570e9fce0df4d 274 SMART SM00849 32 264 1.2E-14 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_35650 fa70ef27e4589b884a7c7c448f45f4b9 288 SUPERFAMILY SSF53474 4 282 4.54E-62 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_35650 fa70ef27e4589b884a7c7c448f45f4b9 288 PRINTS PR00111 Alpha/beta hydrolase fold signature 110 123 2.9E-6 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_35650 fa70ef27e4589b884a7c7c448f45f4b9 288 PRINTS PR00111 Alpha/beta hydrolase fold signature 124 137 2.9E-6 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_35650 fa70ef27e4589b884a7c7c448f45f4b9 288 PRINTS PR00111 Alpha/beta hydrolase fold signature 232 246 2.9E-6 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_35650 fa70ef27e4589b884a7c7c448f45f4b9 288 Pfam PF00561 alpha/beta hydrolase fold 22 146 1.1E-16 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_35650 fa70ef27e4589b884a7c7c448f45f4b9 288 Gene3D G3DSA:3.40.50.1820 3 286 1.7E-70 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_35445 b3fbd749c290a56ec74739f60c8014e8 307 Gene3D G3DSA:3.40.50.1820 2 306 2.4E-68 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_35445 b3fbd749c290a56ec74739f60c8014e8 307 SUPERFAMILY SSF53474 58 305 4.3E-51 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_35445 b3fbd749c290a56ec74739f60c8014e8 307 Pfam PF07859 alpha/beta hydrolase fold 79 280 6.3E-46 T 13-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 RAM_13785 799f5c1a5e6bbaa57d6861ebb9573d21 128 Pfam PF06103 Bacterial protein of unknown function (DUF948) 6 86 4.1E-22 T 13-10-2018 IPR009293 Uncharacterised protein family UPF0478 RAM_45980 435ecf5a3304dd1e7c2c2d93530814ce 409 Pfam PF07687 Peptidase dimerisation domain 203 301 8.8E-14 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain RAM_45980 435ecf5a3304dd1e7c2c2d93530814ce 409 SUPERFAMILY SSF55031 201 314 8.77E-30 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain RAM_45980 435ecf5a3304dd1e7c2c2d93530814ce 409 Gene3D G3DSA:3.30.70.360 199 313 4.0E-126 T 13-10-2018 RAM_45980 435ecf5a3304dd1e7c2c2d93530814ce 409 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 30 395 2.3E-97 T 13-10-2018 IPR017439 Amidohydrolase GO:0016787 RAM_45980 435ecf5a3304dd1e7c2c2d93530814ce 409 PIRSF PIRSF005962 17 409 1.1E-111 T 13-10-2018 IPR017439 Amidohydrolase GO:0016787 RAM_45980 435ecf5a3304dd1e7c2c2d93530814ce 409 Gene3D G3DSA:3.40.630.10 30 393 4.0E-126 T 13-10-2018 RAM_45980 435ecf5a3304dd1e7c2c2d93530814ce 409 SUPERFAMILY SSF53187 19 408 1.05E-73 T 13-10-2018 RAM_45980 435ecf5a3304dd1e7c2c2d93530814ce 409 Pfam PF01546 Peptidase family M20/M25/M40 87 404 3.3E-27 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 RAM_38260 675a1baf86ec0b042f5655c3d3eafbe0 136 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 11 81 5.0E-7 T 13-10-2018 IPR019587 Polyketide cyclase/dehydrase RAM_38260 675a1baf86ec0b042f5655c3d3eafbe0 136 SUPERFAMILY SSF55961 11 134 6.66E-17 T 13-10-2018 RAM_38260 675a1baf86ec0b042f5655c3d3eafbe0 136 Gene3D G3DSA:3.30.530.20 7 134 1.3E-28 T 13-10-2018 IPR023393 START-like domain superfamily RAM_27580 d390fa94beaec31829a15bda357dd726 397 Gene3D G3DSA:3.40.50.2000 208 377 2.0E-114 T 13-10-2018 RAM_27580 d390fa94beaec31829a15bda357dd726 397 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 290 341 2.4E-5 T 13-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 RAM_27580 d390fa94beaec31829a15bda357dd726 397 SUPERFAMILY SSF53756 2 387 1.51E-67 T 13-10-2018 RAM_27580 d390fa94beaec31829a15bda357dd726 397 Gene3D G3DSA:3.40.50.11450 2 387 2.0E-114 T 13-10-2018 RAM_27580 d390fa94beaec31829a15bda357dd726 397 Pfam PF06722 Protein of unknown function (DUF1205) 178 280 2.6E-17 T 13-10-2018 IPR010610 Domain of unknown function DUF1205 RAM_16225 a4ec3799669b4085ea4cdda9238a2090 337 SUPERFAMILY SSF51735 110 298 6.79E-43 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_16225 a4ec3799669b4085ea4cdda9238a2090 337 Gene3D G3DSA:3.40.50.720 109 296 1.2E-83 T 13-10-2018 RAM_16225 a4ec3799669b4085ea4cdda9238a2090 337 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 125 297 1.0E-43 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 RAM_16225 a4ec3799669b4085ea4cdda9238a2090 337 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 237 253 - T 13-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site RAM_16225 a4ec3799669b4085ea4cdda9238a2090 337 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 36 328 1.3E-5 T 13-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 RAM_16225 a4ec3799669b4085ea4cdda9238a2090 337 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 208 230 - T 13-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site RAM_16225 a4ec3799669b4085ea4cdda9238a2090 337 SUPERFAMILY SSF52283 34 137 3.68E-9 T 13-10-2018 RAM_16225 a4ec3799669b4085ea4cdda9238a2090 337 Gene3D G3DSA:3.40.50.720 13 318 1.2E-83 T 13-10-2018 RAM_21615 5784694e58ca023b90708003faabb5a1 457 SUPERFAMILY SSF49384 354 441 4.95E-27 T 13-10-2018 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily GO:0030246 RAM_21615 5784694e58ca023b90708003faabb5a1 457 Gene3D G3DSA:3.30.200.20 2 95 4.5E-28 T 13-10-2018 RAM_21615 5784694e58ca023b90708003faabb5a1 457 Pfam PF00553 Cellulose binding domain 358 452 4.3E-24 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_21615 5784694e58ca023b90708003faabb5a1 457 Gene3D G3DSA:2.60.40.290 352 456 6.0E-29 T 13-10-2018 IPR012291 CBM2, carbohydrate-binding domain superfamily GO:0004553|GO:0030247 RAM_21615 5784694e58ca023b90708003faabb5a1 457 SMART SM00637 358 454 1.1E-33 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_21615 5784694e58ca023b90708003faabb5a1 457 PIRSF PIRSF000654 9 272 1.2E-20 T 13-10-2018 RAM_21615 5784694e58ca023b90708003faabb5a1 457 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 18 41 - T 13-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 RAM_21615 5784694e58ca023b90708003faabb5a1 457 Gene3D G3DSA:1.10.510.10 98 274 8.4E-45 T 13-10-2018 RAM_21615 5784694e58ca023b90708003faabb5a1 457 SUPERFAMILY SSF56112 8 346 1.24E-73 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_21615 5784694e58ca023b90708003faabb5a1 457 Pfam PF00069 Protein kinase domain 12 264 7.6E-48 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_21615 5784694e58ca023b90708003faabb5a1 457 ProSitePatterns PS00109 Tyrosine protein kinases specific active-site signature. 135 147 - T 13-10-2018 IPR008266 Tyrosine-protein kinase, active site GO:0004672|GO:0006468 RAM_00495 379e16e48e4b810a2dc9bda9a7ad71c8 259 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 81 251 8.5E-16 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_00495 379e16e48e4b810a2dc9bda9a7ad71c8 259 SUPERFAMILY SSF161098 58 245 2.62E-29 T 13-10-2018 IPR035906 MetI-like superfamily RAM_00495 379e16e48e4b810a2dc9bda9a7ad71c8 259 Gene3D G3DSA:1.10.3720.10 51 251 1.5E-25 T 13-10-2018 IPR035906 MetI-like superfamily RAM_08805 8a48fcbd69729b3874a84a252d8fdb1b 126 SUPERFAMILY SSF54593 8 115 4.93E-9 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_08805 8a48fcbd69729b3874a84a252d8fdb1b 126 Gene3D G3DSA:3.10.180.10 2 126 2.2E-28 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_28920 1c5faf7969dd52e15ff4281f2b231937 378 SUPERFAMILY SSF161098 86 340 1.83E-32 T 13-10-2018 IPR035906 MetI-like superfamily RAM_28920 1c5faf7969dd52e15ff4281f2b231937 378 Gene3D G3DSA:1.10.3720.10 130 346 1.2E-28 T 13-10-2018 IPR035906 MetI-like superfamily RAM_28920 1c5faf7969dd52e15ff4281f2b231937 378 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 77 343 2.1E-62 T 13-10-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 RAM_28920 1c5faf7969dd52e15ff4281f2b231937 378 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 152 342 9.9E-18 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_33340 38d5af20c2201cf6af582a8855bd80b0 543 SUPERFAMILY SSF53649 31 522 6.41E-36 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 RAM_33340 38d5af20c2201cf6af582a8855bd80b0 543 Pfam PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase 36 476 6.6E-20 T 13-10-2018 IPR002591 Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase GO:0003824 RAM_33340 38d5af20c2201cf6af582a8855bd80b0 543 Gene3D G3DSA:3.40.720.10 462 531 5.1E-7 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 RAM_32555 af56560a108ae3480a3f3426da65ff25 411 Pfam PF07730 Histidine kinase 193 256 1.2E-11 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_32555 af56560a108ae3480a3f3426da65ff25 411 Gene3D G3DSA:3.30.565.10 270 394 1.4E-28 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_32555 af56560a108ae3480a3f3426da65ff25 411 SUPERFAMILY SSF55874 277 393 3.61E-13 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_29400 521d7cfe91951009911510397f462e57 285 SUPERFAMILY SSF53335 6 283 1.99E-62 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_29400 521d7cfe91951009911510397f462e57 285 Pfam PF04072 Leucine carboxyl methyltransferase 11 188 3.5E-48 T 13-10-2018 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp GO:0008168|GO:0032259 RAM_29400 521d7cfe91951009911510397f462e57 285 Gene3D G3DSA:3.40.50.150 1 281 6.4E-62 T 13-10-2018 RAM_29400 521d7cfe91951009911510397f462e57 285 TIGRFAM TIGR00027 mthyl_TIGR00027: methyltransferase, TIGR00027 family 7 266 5.3E-77 T 13-10-2018 IPR011610 S-adenosyl-L-methionine-dependent methyltransferase, putative GO:0008168 RAM_32820 2aba8f4416b7f7da192950912fdd3332 141 SMART SM00960 12 102 1.2E-29 T 13-10-2018 IPR004942 Roadblock/LAMTOR2 domain RAM_32820 2aba8f4416b7f7da192950912fdd3332 141 SUPERFAMILY SSF103196 6 131 8.2E-34 T 13-10-2018 RAM_32820 2aba8f4416b7f7da192950912fdd3332 141 Pfam PF03259 Roadblock/LC7 domain 12 102 1.9E-23 T 13-10-2018 IPR004942 Roadblock/LAMTOR2 domain RAM_32820 2aba8f4416b7f7da192950912fdd3332 141 Gene3D G3DSA:3.30.450.30 8 134 2.1E-41 T 13-10-2018 RAM_43150 839152796f5a326483c443f9c1d9ab31 405 Gene3D G3DSA:3.60.120.10 29 403 3.0E-117 T 13-10-2018 IPR005801 ADC synthase GO:0009058 RAM_43150 839152796f5a326483c443f9c1d9ab31 405 SUPERFAMILY SSF56322 52 399 1.96E-88 T 13-10-2018 IPR005801 ADC synthase GO:0009058 RAM_43150 839152796f5a326483c443f9c1d9ab31 405 Pfam PF00425 chorismate binding enzyme 138 390 1.8E-72 T 13-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal RAM_43150 839152796f5a326483c443f9c1d9ab31 405 TIGRFAM TIGR00543 isochor_syn: isochorismate synthase 136 397 2.4E-84 T 13-10-2018 IPR004561 Isochorismate synthase GO:0008909|GO:0009058 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 RAM_37310 270169ba044423964a8a8614df7a65d6 269 PRINTS PR00111 Alpha/beta hydrolase fold signature 40 55 4.0E-9 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_37310 270169ba044423964a8a8614df7a65d6 269 PRINTS PR00111 Alpha/beta hydrolase fold signature 84 97 4.0E-9 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_37310 270169ba044423964a8a8614df7a65d6 269 PRINTS PR00111 Alpha/beta hydrolase fold signature 197 211 4.0E-9 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_37310 270169ba044423964a8a8614df7a65d6 269 PRINTS PR00111 Alpha/beta hydrolase fold signature 98 111 4.0E-9 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_37310 270169ba044423964a8a8614df7a65d6 269 SUPERFAMILY SSF53474 3 251 1.25E-54 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_37310 270169ba044423964a8a8614df7a65d6 269 Gene3D G3DSA:3.40.50.1820 2 252 2.2E-60 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_37310 270169ba044423964a8a8614df7a65d6 269 Pfam PF00561 alpha/beta hydrolase fold 15 126 3.3E-17 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_08065 ae1b07424932494f496fa90be060f950 251 Pfam PF04397 LytTr DNA-binding domain 143 237 1.0E-19 T 13-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 RAM_08065 ae1b07424932494f496fa90be060f950 251 Gene3D G3DSA:3.40.50.2300 2 126 1.1E-29 T 13-10-2018 RAM_08065 ae1b07424932494f496fa90be060f950 251 SMART SM00448 4 115 3.5E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_08065 ae1b07424932494f496fa90be060f950 251 Gene3D G3DSA:2.40.50.40 133 201 3.5E-6 T 13-10-2018 RAM_08065 ae1b07424932494f496fa90be060f950 251 SUPERFAMILY SSF52172 2 124 7.97E-31 T 13-10-2018 IPR011006 CheY-like superfamily RAM_08065 ae1b07424932494f496fa90be060f950 251 Pfam PF00072 Response regulator receiver domain 6 115 2.6E-21 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_08065 ae1b07424932494f496fa90be060f950 251 SMART SM00850 142 238 4.6E-29 T 13-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 RAM_43250 5cc4fd1748e3517ff4c27efa924d7ccb 161 Pfam PF13673 Acetyltransferase (GNAT) domain 56 138 2.1E-10 T 13-10-2018 IPR000182 GNAT domain RAM_43250 5cc4fd1748e3517ff4c27efa924d7ccb 161 Gene3D G3DSA:3.40.630.30 2 147 1.5E-25 T 13-10-2018 RAM_43250 5cc4fd1748e3517ff4c27efa924d7ccb 161 SUPERFAMILY SSF55729 3 152 9.39E-22 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_13650 b87ee576b0c905c591231cf1b62a12df 155 SUPERFAMILY SSF55961 4 151 1.14E-36 T 13-10-2018 RAM_13650 b87ee576b0c905c591231cf1b62a12df 155 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 15 135 1.3E-11 T 13-10-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like RAM_13650 b87ee576b0c905c591231cf1b62a12df 155 Gene3D G3DSA:3.30.530.20 3 155 2.9E-42 T 13-10-2018 IPR023393 START-like domain superfamily RAM_29545 c7ee78703b6aa538768d58e04ca7dc34 62 SUPERFAMILY SSF46894 5 62 5.44E-11 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_29545 c7ee78703b6aa538768d58e04ca7dc34 62 Gene3D G3DSA:1.10.10.10 1 62 1.5E-12 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_29545 c7ee78703b6aa538768d58e04ca7dc34 62 Pfam PF00196 Bacterial regulatory proteins, luxR family 7 56 6.6E-6 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_30720 0a38e5d4d8496ef176c9212a1ca855fa 581 Pfam PF00465 Iron-containing alcohol dehydrogenase 10 307 1.9E-60 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 RAM_30720 0a38e5d4d8496ef176c9212a1ca855fa 581 Gene3D G3DSA:3.40.50.1970 1 155 1.1E-34 T 13-10-2018 RAM_30720 0a38e5d4d8496ef176c9212a1ca855fa 581 SUPERFAMILY SSF49482 328 566 1.57E-79 T 13-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 RAM_30720 0a38e5d4d8496ef176c9212a1ca855fa 581 SUPERFAMILY SSF56796 9 306 5.36E-70 T 13-10-2018 RAM_30720 0a38e5d4d8496ef176c9212a1ca855fa 581 Pfam PF00775 Dioxygenase 410 565 5.9E-43 T 13-10-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 RAM_30720 0a38e5d4d8496ef176c9212a1ca855fa 581 Gene3D G3DSA:2.60.130.10 310 576 3.5E-96 T 13-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 RAM_30720 0a38e5d4d8496ef176c9212a1ca855fa 581 Pfam PF04444 Catechol dioxygenase N terminus 332 401 3.1E-23 T 13-10-2018 IPR007535 Catechol dioxygenase, N-terminal GO:0005506|GO:0009712|GO:0018576|GO:0055114 RAM_30720 0a38e5d4d8496ef176c9212a1ca855fa 581 Gene3D G3DSA:1.20.1090.10 157 278 1.4E-31 T 13-10-2018 RAM_45720 d9123eb3589bd800801cdd76b19a7e5f 119 Pfam PF02575 YbaB/EbfC DNA-binding family 14 103 2.3E-35 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family RAM_45720 d9123eb3589bd800801cdd76b19a7e5f 119 SUPERFAMILY SSF82607 10 102 6.28E-30 T 13-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily RAM_45720 d9123eb3589bd800801cdd76b19a7e5f 119 Gene3D G3DSA:3.30.1310.10 2 110 3.8E-37 T 13-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily RAM_45720 d9123eb3589bd800801cdd76b19a7e5f 119 PIRSF PIRSF004555 6 115 5.5E-36 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family RAM_45720 d9123eb3589bd800801cdd76b19a7e5f 119 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 8 102 21.647 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family RAM_45720 d9123eb3589bd800801cdd76b19a7e5f 119 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 9 95 1.4E-25 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family RAM_29800 d8dc7e8bb5ee2083fd55577090752f94 759 TIGRFAM TIGR01587 cas3_core: CRISPR-associated helicase Cas3 270 658 1.0E-56 T 13-10-2018 IPR006474 Helicase Cas3, CRISPR-associated, core RAM_29800 d8dc7e8bb5ee2083fd55577090752f94 759 Gene3D G3DSA:1.10.3210.30 1 245 4.5E-52 T 13-10-2018 IPR038257 CRISPR-associated Cas3-type HD domain superfamily RAM_29800 d8dc7e8bb5ee2083fd55577090752f94 759 Gene3D G3DSA:3.40.50.300 246 458 9.0E-11 T 13-10-2018 RAM_29800 d8dc7e8bb5ee2083fd55577090752f94 759 TIGRFAM TIGR01596 cas3_HD: CRISPR-associated endonuclease Cas3-HD 1 198 4.8E-23 T 13-10-2018 IPR006483 CRISPR-associated Cas3-type HD domain RAM_29800 d8dc7e8bb5ee2083fd55577090752f94 759 Pfam PF00270 DEAD/DEAH box helicase 267 444 2.9E-6 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RAM_29800 d8dc7e8bb5ee2083fd55577090752f94 759 SUPERFAMILY SSF52540 265 631 1.14E-24 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_29800 d8dc7e8bb5ee2083fd55577090752f94 759 Gene3D G3DSA:3.40.50.300 480 642 4.6E-6 T 13-10-2018 RAM_44495 83ee267f3078e2f5bb3febcc4c1a8dfa 844 SUPERFAMILY SSF56784 25 251 1.34E-32 T 13-10-2018 IPR036412 HAD-like superfamily RAM_44495 83ee267f3078e2f5bb3febcc4c1a8dfa 844 Pfam PF00723 Glycosyl hydrolases family 15 475 784 1.0E-29 T 13-10-2018 IPR011613 GH15-like domain Reactome: R-HSA-70221 RAM_44495 83ee267f3078e2f5bb3febcc4c1a8dfa 844 Pfam PF02358 Trehalose-phosphatase 28 217 4.7E-28 T 13-10-2018 IPR003337 Trehalose-phosphatase GO:0003824|GO:0005992 RAM_44495 83ee267f3078e2f5bb3febcc4c1a8dfa 844 Gene3D G3DSA:3.40.50.1000 26 237 2.0E-47 T 13-10-2018 IPR023214 HAD superfamily RAM_44495 83ee267f3078e2f5bb3febcc4c1a8dfa 844 Gene3D G3DSA:3.30.70.1020 105 181 2.0E-47 T 13-10-2018 RAM_44495 83ee267f3078e2f5bb3febcc4c1a8dfa 844 SUPERFAMILY SSF48208 462 842 1.85E-88 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_44495 83ee267f3078e2f5bb3febcc4c1a8dfa 844 TIGRFAM TIGR00685 T6PP: trehalose-phosphatase 24 251 8.3E-36 T 13-10-2018 IPR003337 Trehalose-phosphatase GO:0003824|GO:0005992 RAM_44495 83ee267f3078e2f5bb3febcc4c1a8dfa 844 Gene3D G3DSA:1.50.10.10 476 844 2.3E-77 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 RAM_17340 c40f1a37a4ff22ad08c3d5da02944eff 267 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 79 259 3.4E-18 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_17340 c40f1a37a4ff22ad08c3d5da02944eff 267 SUPERFAMILY SSF161098 3 267 3.71E-64 T 13-10-2018 IPR035906 MetI-like superfamily RAM_17340 c40f1a37a4ff22ad08c3d5da02944eff 267 Gene3D G3DSA:1.10.3720.10 2 254 7.8E-55 T 13-10-2018 IPR035906 MetI-like superfamily RAM_24335 32917954e037d4f6ea6c6b82b548aec7 102 Gene3D G3DSA:3.30.70.100 1 99 1.2E-10 T 13-10-2018 RAM_24335 32917954e037d4f6ea6c6b82b548aec7 102 Pfam PF07978 NIPSNAP 3 98 5.7E-11 T 13-10-2018 IPR012577 NIPSNAP RAM_24335 32917954e037d4f6ea6c6b82b548aec7 102 SUPERFAMILY SSF54909 1 83 3.58E-16 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_12915 0cf2e1d1ef61724c57dd0f693be24422 186 Gene3D G3DSA:1.10.1740.10 12 96 2.8E-18 T 13-10-2018 RAM_12915 0cf2e1d1ef61724c57dd0f693be24422 186 SUPERFAMILY SSF88946 12 117 8.24E-22 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_12915 0cf2e1d1ef61724c57dd0f693be24422 186 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 28 182 1.2E-27 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_12915 0cf2e1d1ef61724c57dd0f693be24422 186 Pfam PF04545 Sigma-70, region 4 131 180 3.6E-14 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 RAM_12915 0cf2e1d1ef61724c57dd0f693be24422 186 Pfam PF04542 Sigma-70 region 2 31 99 2.2E-17 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_12915 0cf2e1d1ef61724c57dd0f693be24422 186 Gene3D G3DSA:1.10.10.10 117 186 1.4E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_12915 0cf2e1d1ef61724c57dd0f693be24422 186 SUPERFAMILY SSF88659 121 183 5.05E-15 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_12915 0cf2e1d1ef61724c57dd0f693be24422 186 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 54 86 - T 13-10-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_42765 5bb25d86a61e809c426be93a9836ddb7 371 SUPERFAMILY SSF81342 28 158 6.98E-6 T 13-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 RAM_42765 5bb25d86a61e809c426be93a9836ddb7 371 SUPERFAMILY SSF56524 237 370 5.1E-31 T 13-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 RAM_42765 5bb25d86a61e809c426be93a9836ddb7 371 Pfam PF00174 Oxidoreductase molybdopterin binding domain 241 369 4.5E-22 T 13-10-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 RAM_42765 5bb25d86a61e809c426be93a9836ddb7 371 Gene3D G3DSA:3.90.420.10 221 371 2.4E-27 T 13-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 RAM_42765 5bb25d86a61e809c426be93a9836ddb7 371 PRINTS PR00407 Eukaryotic molybdopterin domain signature 325 341 7.7E-7 T 13-10-2018 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-1614517 RAM_42765 5bb25d86a61e809c426be93a9836ddb7 371 PRINTS PR00407 Eukaryotic molybdopterin domain signature 358 371 7.7E-7 T 13-10-2018 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-1614517 RAM_42765 5bb25d86a61e809c426be93a9836ddb7 371 PRINTS PR00407 Eukaryotic molybdopterin domain signature 277 292 7.7E-7 T 13-10-2018 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-1614517 RAM_42765 5bb25d86a61e809c426be93a9836ddb7 371 PRINTS PR00407 Eukaryotic molybdopterin domain signature 342 355 7.7E-7 T 13-10-2018 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-1614517 RAM_31820 e60cfaa5b6768d16b2fc051ec615d5c3 200 Pfam PF00005 ABC transporter 8 121 1.2E-17 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_31820 e60cfaa5b6768d16b2fc051ec615d5c3 200 ProSitePatterns PS00211 ABC transporters family signature. 94 108 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_31820 e60cfaa5b6768d16b2fc051ec615d5c3 200 SUPERFAMILY SSF52540 7 193 1.49E-37 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_31820 e60cfaa5b6768d16b2fc051ec615d5c3 200 Gene3D G3DSA:3.40.50.300 2 197 9.3E-45 T 13-10-2018 RAM_42775 6d0fd03cf7aeec07b367e2b20799fde5 471 Gene3D G3DSA:2.40.10.10 159 254 3.8E-31 T 13-10-2018 RAM_42775 6d0fd03cf7aeec07b367e2b20799fde5 471 Gene3D G3DSA:2.40.10.10 255 383 4.3E-44 T 13-10-2018 RAM_42775 6d0fd03cf7aeec07b367e2b20799fde5 471 PRINTS PR00834 HtrA/DegQ protease family signature 200 212 1.2E-49 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAM_42775 6d0fd03cf7aeec07b367e2b20799fde5 471 PRINTS PR00834 HtrA/DegQ protease family signature 306 323 1.2E-49 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAM_42775 6d0fd03cf7aeec07b367e2b20799fde5 471 PRINTS PR00834 HtrA/DegQ protease family signature 415 427 1.2E-49 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAM_42775 6d0fd03cf7aeec07b367e2b20799fde5 471 PRINTS PR00834 HtrA/DegQ protease family signature 328 345 1.2E-49 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAM_42775 6d0fd03cf7aeec07b367e2b20799fde5 471 PRINTS PR00834 HtrA/DegQ protease family signature 265 289 1.2E-49 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAM_42775 6d0fd03cf7aeec07b367e2b20799fde5 471 PRINTS PR00834 HtrA/DegQ protease family signature 224 244 1.2E-49 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAM_42775 6d0fd03cf7aeec07b367e2b20799fde5 471 SMART SM00228 386 457 4.4E-10 T 13-10-2018 IPR001478 PDZ domain GO:0005515 RAM_42775 6d0fd03cf7aeec07b367e2b20799fde5 471 Gene3D G3DSA:2.30.42.10 385 468 1.7E-21 T 13-10-2018 RAM_42775 6d0fd03cf7aeec07b367e2b20799fde5 471 Pfam PF13180 PDZ domain 387 455 1.3E-12 T 13-10-2018 IPR001478 PDZ domain GO:0005515 RAM_42775 6d0fd03cf7aeec07b367e2b20799fde5 471 SUPERFAMILY SSF50494 166 381 4.51E-56 T 13-10-2018 IPR009003 Peptidase S1, PA clan RAM_42775 6d0fd03cf7aeec07b367e2b20799fde5 471 SUPERFAMILY SSF50156 357 456 4.99E-16 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 RAM_42775 6d0fd03cf7aeec07b367e2b20799fde5 471 Pfam PF13365 Trypsin-like peptidase domain 191 335 2.0E-32 T 13-10-2018 RAM_18905 e7581f1c955b75328c6c3ddca5ee7f32 690 SMART SM00458 37 165 8.1E-34 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_18905 e7581f1c955b75328c6c3ddca5ee7f32 690 Gene3D G3DSA:2.120.10.30 350 689 2.7E-110 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RAM_18905 e7581f1c955b75328c6c3ddca5ee7f32 690 Gene3D G3DSA:2.60.40.10 270 349 4.9E-9 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_18905 e7581f1c955b75328c6c3ddca5ee7f32 690 Pfam PF07995 Glucose / Sorbosone dehydrogenase 376 669 1.9E-66 T 13-10-2018 IPR012938 Glucose/Sorbosone dehydrogenase RAM_18905 e7581f1c955b75328c6c3ddca5ee7f32 690 SUPERFAMILY SSF49265 171 358 3.05E-14 T 13-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 RAM_18905 e7581f1c955b75328c6c3ddca5ee7f32 690 Gene3D G3DSA:2.60.40.10 170 256 1.0E-12 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_18905 e7581f1c955b75328c6c3ddca5ee7f32 690 Pfam PF00652 Ricin-type beta-trefoil lectin domain 41 162 6.3E-30 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_18905 e7581f1c955b75328c6c3ddca5ee7f32 690 SUPERFAMILY SSF50370 42 163 5.6E-40 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_18905 e7581f1c955b75328c6c3ddca5ee7f32 690 SMART SM00060 172 246 25.0 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 RAM_18905 e7581f1c955b75328c6c3ddca5ee7f32 690 SMART SM00060 267 347 2.6E-6 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 RAM_18905 e7581f1c955b75328c6c3ddca5ee7f32 690 SUPERFAMILY SSF50952 368 670 9.55E-37 T 13-10-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 RAM_18905 e7581f1c955b75328c6c3ddca5ee7f32 690 Gene3D G3DSA:2.80.10.50 39 164 3.5E-42 T 13-10-2018 RAM_32720 987e2701c1f9e3d548787de1deb1014e 175 Pfam PF13565 Homeodomain-like domain 88 167 1.1E-10 T 13-10-2018 RAM_32720 987e2701c1f9e3d548787de1deb1014e 175 SUPERFAMILY SSF46689 48 169 3.4E-7 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_14050 24e4c76d4f2e864651fa260dc658b493 308 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 1 300 1.0E-66 T 13-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 RAM_14050 24e4c76d4f2e864651fa260dc658b493 308 Pfam PF00551 Formyl transferase 2 179 1.6E-30 T 13-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RAM_14050 24e4c76d4f2e864651fa260dc658b493 308 Pfam PF02911 Formyl transferase, C-terminal domain 204 299 7.1E-21 T 13-10-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RAM_14050 24e4c76d4f2e864651fa260dc658b493 308 SUPERFAMILY SSF50486 206 307 1.81E-24 T 13-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 RAM_14050 24e4c76d4f2e864651fa260dc658b493 308 Gene3D G3DSA:3.40.50.170 1 206 1.7E-62 T 13-10-2018 RAM_14050 24e4c76d4f2e864651fa260dc658b493 308 SUPERFAMILY SSF53328 1 206 1.44E-54 T 13-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RAM_14050 24e4c76d4f2e864651fa260dc658b493 308 Gene3D G3DSA:3.10.25.10 208 307 1.2E-21 T 13-10-2018 IPR037022 Formyl transferase, C-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RAM_14050 24e4c76d4f2e864651fa260dc658b493 308 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 1 302 31.54 T 13-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 RAM_07070 3e8bb37a1c2a2cf0735240a1bdd10934 914 SUPERFAMILY SSF53649 663 888 1.16E-5 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 RAM_07070 3e8bb37a1c2a2cf0735240a1bdd10934 914 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 303 333 2.1E-7 T 13-10-2018 IPR011964 YVTN beta-propeller repeat RAM_07070 3e8bb37a1c2a2cf0735240a1bdd10934 914 Gene3D G3DSA:2.130.10.10 16 262 8.2E-11 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RAM_07070 3e8bb37a1c2a2cf0735240a1bdd10934 914 Pfam PF04185 Phosphoesterase family 695 775 4.1E-7 T 13-10-2018 IPR007312 Phosphoesterase GO:0016788 RAM_07070 3e8bb37a1c2a2cf0735240a1bdd10934 914 SUPERFAMILY SSF63825 98 370 8.89E-25 T 13-10-2018 RAM_07070 3e8bb37a1c2a2cf0735240a1bdd10934 914 Gene3D G3DSA:2.130.10.10 264 454 7.9E-13 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RAM_07070 3e8bb37a1c2a2cf0735240a1bdd10934 914 Gene3D G3DSA:3.40.720.10 678 820 2.4E-16 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 RAM_34245 556d7445595eae8e8522ca930e7863af 586 Gene3D G3DSA:2.10.10.20 534 586 1.9E-18 T 13-10-2018 RAM_34245 556d7445595eae8e8522ca930e7863af 586 Pfam PF00728 Glycosyl hydrolase family 20, catalytic domain 175 341 8.9E-60 T 13-10-2018 IPR015883 Glycoside hydrolase family 20, catalytic domain GO:0004553|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 RAM_34245 556d7445595eae8e8522ca930e7863af 586 Pfam PF00728 Glycosyl hydrolase family 20, catalytic domain 349 490 6.4E-22 T 13-10-2018 IPR015883 Glycoside hydrolase family 20, catalytic domain GO:0004553|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 RAM_34245 556d7445595eae8e8522ca930e7863af 586 Gene3D G3DSA:3.20.20.80 175 514 1.6E-172 T 13-10-2018 RAM_34245 556d7445595eae8e8522ca930e7863af 586 PRINTS PR00738 Glycosyl hydrolase family 20 signature 454 470 1.7E-45 T 13-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RAM_34245 556d7445595eae8e8522ca930e7863af 586 PRINTS PR00738 Glycosyl hydrolase family 20 signature 169 186 1.7E-45 T 13-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RAM_34245 556d7445595eae8e8522ca930e7863af 586 PRINTS PR00738 Glycosyl hydrolase family 20 signature 305 323 1.7E-45 T 13-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RAM_34245 556d7445595eae8e8522ca930e7863af 586 PRINTS PR00738 Glycosyl hydrolase family 20 signature 327 340 1.7E-45 T 13-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RAM_34245 556d7445595eae8e8522ca930e7863af 586 PRINTS PR00738 Glycosyl hydrolase family 20 signature 257 274 1.7E-45 T 13-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RAM_34245 556d7445595eae8e8522ca930e7863af 586 PRINTS PR00738 Glycosyl hydrolase family 20 signature 472 489 1.7E-45 T 13-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RAM_34245 556d7445595eae8e8522ca930e7863af 586 PRINTS PR00738 Glycosyl hydrolase family 20 signature 127 147 1.7E-45 T 13-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RAM_34245 556d7445595eae8e8522ca930e7863af 586 PRINTS PR00738 Glycosyl hydrolase family 20 signature 198 219 1.7E-45 T 13-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RAM_34245 556d7445595eae8e8522ca930e7863af 586 SUPERFAMILY SSF55545 29 174 1.02E-25 T 13-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 RAM_34245 556d7445595eae8e8522ca930e7863af 586 SMART SM00495 538 583 5.0E-17 T 13-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 RAM_34245 556d7445595eae8e8522ca930e7863af 586 Pfam PF02839 Carbohydrate binding domain 555 580 7.8E-5 T 13-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 RAM_34245 556d7445595eae8e8522ca930e7863af 586 SUPERFAMILY SSF51055 534 586 3.73E-15 T 13-10-2018 IPR036573 Carbohydrate-binding module superfamily 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 RAM_34245 556d7445595eae8e8522ca930e7863af 586 SUPERFAMILY SSF51445 175 519 8.69E-107 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_34245 556d7445595eae8e8522ca930e7863af 586 Pfam PF02838 Glycosyl hydrolase family 20, domain 2 36 171 2.4E-21 T 13-10-2018 IPR015882 Beta-hexosaminidase, bacterial type, N-terminal RAM_34245 556d7445595eae8e8522ca930e7863af 586 Gene3D G3DSA:3.30.379.10 37 174 1.6E-172 T 13-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 RAM_38475 27e53961dd44a209db93e6205f26c1e0 287 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 97 273 6.3E-16 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_38475 27e53961dd44a209db93e6205f26c1e0 287 SUPERFAMILY SSF161098 11 286 2.09E-54 T 13-10-2018 IPR035906 MetI-like superfamily RAM_38475 27e53961dd44a209db93e6205f26c1e0 287 Gene3D G3DSA:1.10.3720.10 7 277 1.5E-54 T 13-10-2018 IPR035906 MetI-like superfamily RAM_26645 15e3a695aac1b7897026891d3c42dd8c 435 SUPERFAMILY SSF103473 12 424 1.02E-63 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_26645 15e3a695aac1b7897026891d3c42dd8c 435 Pfam PF07690 Major Facilitator Superfamily 283 430 1.8E-12 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_26645 15e3a695aac1b7897026891d3c42dd8c 435 Pfam PF00083 Sugar (and other) transporter 15 228 3.1E-23 T 13-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 RAM_26645 15e3a695aac1b7897026891d3c42dd8c 435 ProSitePatterns PS00216 Sugar transport proteins signature 1. 295 312 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RAM_26645 15e3a695aac1b7897026891d3c42dd8c 435 Gene3D G3DSA:1.20.1250.20 12 432 2.5E-65 T 13-10-2018 RAM_20635 c064ec64aee3b3d34d7f56645cee1b0b 500 Gene3D G3DSA:2.115.10.20 226 495 2.5E-8 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily RAM_20635 c064ec64aee3b3d34d7f56645cee1b0b 500 SUPERFAMILY SSF75005 238 477 9.42E-8 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily RAM_13845 786569c9ecf8216a84c249230eb6a93d 271 Gene3D G3DSA:3.40.710.10 2 270 2.9E-78 T 13-10-2018 RAM_13845 786569c9ecf8216a84c249230eb6a93d 271 Pfam PF00144 Beta-lactamase 18 263 7.4E-36 T 13-10-2018 IPR001466 Beta-lactamase-related RAM_13845 786569c9ecf8216a84c249230eb6a93d 271 SUPERFAMILY SSF56601 6 265 8.95E-56 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_10595 d92909c398c3c5df8b842e81856a0ca0 214 SMART SM00448 1 120 1.6E-9 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_10595 d92909c398c3c5df8b842e81856a0ca0 214 Pfam PF00196 Bacterial regulatory proteins, luxR family 151 195 3.2E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_10595 d92909c398c3c5df8b842e81856a0ca0 214 SUPERFAMILY SSF46894 132 195 1.5E-15 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_10595 d92909c398c3c5df8b842e81856a0ca0 214 SUPERFAMILY SSF52172 1 132 3.13E-17 T 13-10-2018 IPR011006 CheY-like superfamily RAM_10595 d92909c398c3c5df8b842e81856a0ca0 214 Gene3D G3DSA:3.40.50.12740 1 205 1.2E-42 T 13-10-2018 RAM_10595 d92909c398c3c5df8b842e81856a0ca0 214 SMART SM00421 148 211 1.7E-15 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_10595 d92909c398c3c5df8b842e81856a0ca0 214 ProSitePatterns PS00622 LuxR-type HTH domain signature. 165 192 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_10595 d92909c398c3c5df8b842e81856a0ca0 214 Pfam PF00072 Response regulator receiver domain 3 108 9.1E-15 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_10595 d92909c398c3c5df8b842e81856a0ca0 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 151 165 1.1E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_10595 d92909c398c3c5df8b842e81856a0ca0 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 181 193 1.1E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_10595 d92909c398c3c5df8b842e81856a0ca0 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 165 181 1.1E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_34275 7af60326a963f6059baf5bb7716df091 616 Pfam PF00679 Elongation factor G C-terminus 412 498 1.2E-20 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like RAM_34275 7af60326a963f6059baf5bb7716df091 616 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 56 71 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site RAM_34275 7af60326a963f6059baf5bb7716df091 616 Pfam PF00009 Elongation factor Tu GTP binding domain 18 194 6.7E-52 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_34275 7af60326a963f6059baf5bb7716df091 616 Hamap MF_00071 Elongation factor 4 [lepA]. 1 611 282.873 T 13-10-2018 IPR006297 Elongation factor 4 GO:0005525 RAM_34275 7af60326a963f6059baf5bb7716df091 616 Gene3D G3DSA:2.40.30.10 199 298 5.0E-33 T 13-10-2018 RAM_34275 7af60326a963f6059baf5bb7716df091 616 Gene3D G3DSA:3.30.70.3380 381 491 1.8E-40 T 13-10-2018 RAM_34275 7af60326a963f6059baf5bb7716df091 616 Pfam PF06421 GTP-binding protein LepA C-terminus 502 606 2.4E-48 T 13-10-2018 IPR013842 GTP-binding protein LepA, C-terminal RAM_34275 7af60326a963f6059baf5bb7716df091 616 PRINTS PR00315 GTP-binding elongation factor signature 63 71 3.8E-13 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_34275 7af60326a963f6059baf5bb7716df091 616 PRINTS PR00315 GTP-binding elongation factor signature 103 114 3.8E-13 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_34275 7af60326a963f6059baf5bb7716df091 616 PRINTS PR00315 GTP-binding elongation factor signature 20 33 3.8E-13 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_34275 7af60326a963f6059baf5bb7716df091 616 PRINTS PR00315 GTP-binding elongation factor signature 139 148 3.8E-13 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_34275 7af60326a963f6059baf5bb7716df091 616 PRINTS PR00315 GTP-binding elongation factor signature 87 97 3.8E-13 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_34275 7af60326a963f6059baf5bb7716df091 616 SUPERFAMILY SSF50447 195 294 1.39E-17 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RAM_34275 7af60326a963f6059baf5bb7716df091 616 SUPERFAMILY SSF52540 12 218 5.43E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_34275 7af60326a963f6059baf5bb7716df091 616 SUPERFAMILY SSF54980 412 507 1.77E-22 T 13-10-2018 IPR035647 EF-G domain III/V-like RAM_34275 7af60326a963f6059baf5bb7716df091 616 Gene3D G3DSA:3.30.70.2570 493 567 3.1E-33 T 13-10-2018 IPR038363 LepA, C-terminal domain superfamily RAM_34275 7af60326a963f6059baf5bb7716df091 616 Gene3D G3DSA:3.40.50.300 15 198 1.1E-70 T 13-10-2018 RAM_34275 7af60326a963f6059baf5bb7716df091 616 SMART SM00838 411 495 1.7E-4 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like RAM_34275 7af60326a963f6059baf5bb7716df091 616 Gene3D G3DSA:3.30.70.870 299 380 1.5E-34 T 13-10-2018 RAM_34275 7af60326a963f6059baf5bb7716df091 616 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 20 189 4.5E-19 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 RAM_34275 7af60326a963f6059baf5bb7716df091 616 TIGRFAM TIGR01393 lepA: elongation factor 4 17 608 9.9E-296 T 13-10-2018 IPR006297 Elongation factor 4 GO:0005525 RAM_34275 7af60326a963f6059baf5bb7716df091 616 SUPERFAMILY SSF54980 304 383 8.27E-19 T 13-10-2018 IPR035647 EF-G domain III/V-like RAM_34450 cb97414c0b0b5f307ae0321e72918b28 785 Pfam PF01804 Penicillin amidase 36 773 4.4E-124 T 13-10-2018 IPR002692 Penicillin/GL-7-ACA/AHL/aculeacin-A acylase GO:0016787|GO:0017000 RAM_34450 cb97414c0b0b5f307ae0321e72918b28 785 SUPERFAMILY SSF56235 31 783 7.2E-143 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RAM_34450 cb97414c0b0b5f307ae0321e72918b28 785 Gene3D G3DSA:2.30.120.10 305 381 3.8E-203 T 13-10-2018 RAM_34450 cb97414c0b0b5f307ae0321e72918b28 785 Gene3D G3DSA:1.10.439.10 25 204 4.2E-59 T 13-10-2018 IPR023343 Penicillin amidase type, domain 1 GO:0016811 RAM_34450 cb97414c0b0b5f307ae0321e72918b28 785 Gene3D G3DSA:1.10.1400.10 526 713 3.8E-203 T 13-10-2018 RAM_34450 cb97414c0b0b5f307ae0321e72918b28 785 Gene3D G3DSA:3.60.20.10 229 773 3.8E-203 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RAM_47390 cac9b9b40da9045de1eb50fd6b4c1018 309 SMART SM00347 29 129 1.5E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_47390 cac9b9b40da9045de1eb50fd6b4c1018 309 Gene3D G3DSA:1.10.10.10 1 142 9.1E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_47390 cac9b9b40da9045de1eb50fd6b4c1018 309 SUPERFAMILY SSF55729 153 299 3.43E-26 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_47390 cac9b9b40da9045de1eb50fd6b4c1018 309 Pfam PF00583 Acetyltransferase (GNAT) family 189 285 2.4E-14 T 13-10-2018 IPR000182 GNAT domain RAM_47390 cac9b9b40da9045de1eb50fd6b4c1018 309 SUPERFAMILY SSF46785 12 146 5.15E-26 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_47390 cac9b9b40da9045de1eb50fd6b4c1018 309 Pfam PF12802 MarR family 37 93 1.9E-16 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_47390 cac9b9b40da9045de1eb50fd6b4c1018 309 Gene3D G3DSA:3.40.630.30 147 296 2.3E-22 T 13-10-2018 RAM_26900 88fed877f1c6c2f9037646a5f181c9b6 561 Pfam PF07907 YibE/F-like protein 304 542 4.1E-73 T 13-10-2018 IPR012507 YibE/F-like RAM_21755 e2e3d8a14e11d63e9f06d8b8385af121 455 Gene3D G3DSA:3.40.1190.20 2 297 8.3E-68 T 13-10-2018 IPR029056 Ribokinase-like RAM_21755 e2e3d8a14e11d63e9f06d8b8385af121 455 Pfam PF01467 Cytidylyltransferase-like 326 420 9.0E-14 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RAM_21755 e2e3d8a14e11d63e9f06d8b8385af121 455 SUPERFAMILY SSF53613 4 289 4.05E-33 T 13-10-2018 IPR029056 Ribokinase-like RAM_21755 e2e3d8a14e11d63e9f06d8b8385af121 455 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 324 382 1.7E-14 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RAM_21755 e2e3d8a14e11d63e9f06d8b8385af121 455 Gene3D G3DSA:3.40.50.620 308 454 1.4E-32 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAM_21755 e2e3d8a14e11d63e9f06d8b8385af121 455 Pfam PF00294 pfkB family carbohydrate kinase 4 292 7.9E-21 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB RAM_21755 e2e3d8a14e11d63e9f06d8b8385af121 455 SUPERFAMILY SSF52374 323 449 3.38E-21 T 13-10-2018 RAM_21755 e2e3d8a14e11d63e9f06d8b8385af121 455 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 248 261 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RAM_30185 f3375b75d4b6dc67e1a26f9dd8cc5752 289 Pfam PF01256 Carbohydrate kinase 30 282 6.3E-36 T 13-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 RAM_30185 f3375b75d4b6dc67e1a26f9dd8cc5752 289 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 26 284 7.4E-42 T 13-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 RAM_30185 f3375b75d4b6dc67e1a26f9dd8cc5752 289 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 5 289 17.32 T 13-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 RAM_30185 f3375b75d4b6dc67e1a26f9dd8cc5752 289 SUPERFAMILY SSF53613 21 286 1.46E-45 T 13-10-2018 IPR029056 Ribokinase-like RAM_30185 f3375b75d4b6dc67e1a26f9dd8cc5752 289 Gene3D G3DSA:3.40.1190.20 24 289 8.7E-55 T 13-10-2018 IPR029056 Ribokinase-like RAM_15065 36706c391216f298a6d6243b3f45e7e7 440 Gene3D G3DSA:1.20.1250.20 249 434 8.9E-21 T 13-10-2018 RAM_15065 36706c391216f298a6d6243b3f45e7e7 440 Gene3D G3DSA:1.20.1720.10 2 239 6.4E-46 T 13-10-2018 RAM_15065 36706c391216f298a6d6243b3f45e7e7 440 Pfam PF07690 Major Facilitator Superfamily 7 387 2.3E-48 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_15065 36706c391216f298a6d6243b3f45e7e7 440 SUPERFAMILY SSF103473 2 432 8.5E-59 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_16980 5d7db0028689d6713a36ccee8b9d3176 160 PRINTS PR00598 Bacterial regulatory protein MarR family signature 75 90 4.7E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_16980 5d7db0028689d6713a36ccee8b9d3176 160 PRINTS PR00598 Bacterial regulatory protein MarR family signature 94 110 4.7E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_16980 5d7db0028689d6713a36ccee8b9d3176 160 PRINTS PR00598 Bacterial regulatory protein MarR family signature 58 74 4.7E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_16980 5d7db0028689d6713a36ccee8b9d3176 160 Pfam PF01047 MarR family 39 99 4.2E-9 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_16980 5d7db0028689d6713a36ccee8b9d3176 160 Gene3D G3DSA:1.10.10.10 6 152 3.0E-36 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_16980 5d7db0028689d6713a36ccee8b9d3176 160 SMART SM00347 32 134 3.7E-17 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_16980 5d7db0028689d6713a36ccee8b9d3176 160 SUPERFAMILY SSF46785 5 146 1.15E-27 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_38725 1d801e58a3890f398f4f3559375e0aab 1336 Pfam PF11847 Domain of unknown function (DUF3367) 39 665 4.4E-231 T 13-10-2018 IPR021798 Alpha-(1->3)-arabinofuranosyltransferase GO:0016740 KEGG: 00571+2.4.2.47|KEGG: 00572+2.4.2.47|MetaCyc: PWY-6397 RAM_38725 1d801e58a3890f398f4f3559375e0aab 1336 SUPERFAMILY SSF49785 702 821 5.1E-12 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_38725 1d801e58a3890f398f4f3559375e0aab 1336 Pfam PF00754 F5/8 type C domain 691 771 4.8E-8 T 13-10-2018 IPR000421 Coagulation factor 5/8 C-terminal domain RAM_38725 1d801e58a3890f398f4f3559375e0aab 1336 Gene3D G3DSA:2.60.120.260 684 827 1.0E-9 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_28330 37b0fc549a4f5165706ce3058a1a40d5 464 SUPERFAMILY SSF103473 18 457 4.45E-77 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_28330 37b0fc549a4f5165706ce3058a1a40d5 464 Pfam PF00083 Sugar (and other) transporter 70 456 4.9E-42 T 13-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 RAM_28330 37b0fc549a4f5165706ce3058a1a40d5 464 Gene3D G3DSA:1.20.1250.20 25 458 5.9E-76 T 13-10-2018 RAM_04430 b13bf90f38e8706c6c3a1dc0d1ddb836 108 Gene3D G3DSA:1.10.10.10 2 107 8.7E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_04430 b13bf90f38e8706c6c3a1dc0d1ddb836 108 Pfam PF01638 HxlR-like helix-turn-helix 15 95 2.6E-15 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type RAM_04430 b13bf90f38e8706c6c3a1dc0d1ddb836 108 SUPERFAMILY SSF46785 6 103 2.73E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_12035 ef18e8c1c82ca64d0afc315f1d63150b 308 SUPERFAMILY SSF53850 31 304 1.07E-57 T 13-10-2018 RAM_12035 ef18e8c1c82ca64d0afc315f1d63150b 308 Gene3D G3DSA:3.40.190.10 34 304 5.9E-69 T 13-10-2018 RAM_12035 ef18e8c1c82ca64d0afc315f1d63150b 308 Pfam PF16868 NMT1-like family 34 304 4.2E-48 T 13-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family RAM_12035 ef18e8c1c82ca64d0afc315f1d63150b 308 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 10 306 5.2E-59 T 13-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family RAM_12035 ef18e8c1c82ca64d0afc315f1d63150b 308 Gene3D G3DSA:3.40.190.10 110 244 5.9E-69 T 13-10-2018 RAM_36780 7b4a0a7786550654765973cb066bf63b 256 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 149 177 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_36780 7b4a0a7786550654765973cb066bf63b 256 Pfam PF00106 short chain dehydrogenase 6 206 2.5E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36780 7b4a0a7786550654765973cb066bf63b 256 SUPERFAMILY SSF51735 3 251 3.91E-54 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_36780 7b4a0a7786550654765973cb066bf63b 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 3.6E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36780 7b4a0a7786550654765973cb066bf63b 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 3.6E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36780 7b4a0a7786550654765973cb066bf63b 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 3.6E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36780 7b4a0a7786550654765973cb066bf63b 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 136 152 3.6E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36780 7b4a0a7786550654765973cb066bf63b 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 3.6E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36780 7b4a0a7786550654765973cb066bf63b 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 76 87 3.6E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36780 7b4a0a7786550654765973cb066bf63b 256 Gene3D G3DSA:3.40.50.720 1 254 4.5E-62 T 13-10-2018 RAM_36780 7b4a0a7786550654765973cb066bf63b 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 181 4.2E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36780 7b4a0a7786550654765973cb066bf63b 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 76 87 4.2E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36780 7b4a0a7786550654765973cb066bf63b 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 142 150 4.2E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_21405 f0cabbdc13dc31857d3156086e232d61 288 SUPERFAMILY SSF53474 5 268 3.57E-40 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_21405 f0cabbdc13dc31857d3156086e232d61 288 Pfam PF00561 alpha/beta hydrolase fold 29 264 4.9E-18 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_21405 f0cabbdc13dc31857d3156086e232d61 288 Gene3D G3DSA:3.40.50.1820 3 275 2.2E-45 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_21405 f0cabbdc13dc31857d3156086e232d61 288 PRINTS PR00111 Alpha/beta hydrolase fold signature 109 122 1.3E-7 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_21405 f0cabbdc13dc31857d3156086e232d61 288 PRINTS PR00111 Alpha/beta hydrolase fold signature 223 237 1.3E-7 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_21405 f0cabbdc13dc31857d3156086e232d61 288 PRINTS PR00111 Alpha/beta hydrolase fold signature 52 67 1.3E-7 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_21405 f0cabbdc13dc31857d3156086e232d61 288 PRINTS PR00111 Alpha/beta hydrolase fold signature 95 108 1.3E-7 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_42425 3cda6b66aea74896c3034f53bc58c124 237 SUPERFAMILY SSF46689 190 234 2.06E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_42425 3cda6b66aea74896c3034f53bc58c124 237 Pfam PF02311 AraC-like ligand binding domain 14 74 2.0E-4 T 13-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 RAM_42425 3cda6b66aea74896c3034f53bc58c124 237 SMART SM00342 153 235 1.2E-18 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_42425 3cda6b66aea74896c3034f53bc58c124 237 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 190 231 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RAM_42425 3cda6b66aea74896c3034f53bc58c124 237 SUPERFAMILY SSF51182 3 158 4.84E-16 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RAM_42425 3cda6b66aea74896c3034f53bc58c124 237 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 219 235 3.2E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RAM_42425 3cda6b66aea74896c3034f53bc58c124 237 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 204 219 3.2E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RAM_42425 3cda6b66aea74896c3034f53bc58c124 237 Gene3D G3DSA:2.60.120.10 1 77 1.2E-7 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_42425 3cda6b66aea74896c3034f53bc58c124 237 Gene3D G3DSA:1.10.10.60 139 237 7.0E-19 T 13-10-2018 RAM_42425 3cda6b66aea74896c3034f53bc58c124 237 Pfam PF12833 Helix-turn-helix domain 162 235 1.8E-18 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_09730 3b48cdd2be7d535925c089bdda6fc62e 440 Pfam PF13556 PucR C-terminal helix-turn-helix domain 380 438 2.9E-22 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain RAM_09730 3b48cdd2be7d535925c089bdda6fc62e 440 Pfam PF07905 Purine catabolism regulatory protein-like family 7 120 1.6E-24 T 13-10-2018 IPR012914 Purine catabolism PurC-like domain RAM_09730 3b48cdd2be7d535925c089bdda6fc62e 440 Gene3D G3DSA:1.10.10.2840 314 440 3.1E-26 T 13-10-2018 RAM_38930 03b49a0c5490c40b0d9235322148992b 231 SMART SM00862 149 225 1.4E-24 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_38930 03b49a0c5490c40b0d9235322148992b 231 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 225 1.4E-23 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_38930 03b49a0c5490c40b0d9235322148992b 231 Gene3D G3DSA:3.40.50.2300 2 120 9.6E-37 T 13-10-2018 RAM_38930 03b49a0c5490c40b0d9235322148992b 231 Pfam PF00072 Response regulator receiver domain 5 114 2.0E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_38930 03b49a0c5490c40b0d9235322148992b 231 SMART SM00448 3 113 1.9E-42 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_38930 03b49a0c5490c40b0d9235322148992b 231 Gene3D G3DSA:1.10.10.10 121 229 2.1E-34 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_38930 03b49a0c5490c40b0d9235322148992b 231 SUPERFAMILY SSF52172 4 126 9.39E-42 T 13-10-2018 IPR011006 CheY-like superfamily RAM_38930 03b49a0c5490c40b0d9235322148992b 231 SUPERFAMILY SSF46894 125 226 4.82E-29 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_36240 416da0df40f77eccb79c0c9591ccdf0c 330 SUPERFAMILY SSF55124 151 247 3.43E-14 T 13-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RAM_36240 416da0df40f77eccb79c0c9591ccdf0c 330 SUPERFAMILY SSF56014 64 159 1.16E-6 T 13-10-2018 RAM_36240 416da0df40f77eccb79c0c9591ccdf0c 330 Gene3D G3DSA:3.30.413.10 61 81 9.6E-11 T 13-10-2018 RAM_36240 416da0df40f77eccb79c0c9591ccdf0c 330 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 1 42 1.3E-11 T 13-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RAM_36240 416da0df40f77eccb79c0c9591ccdf0c 330 SUPERFAMILY SSF55124 1 56 3.11E-13 T 13-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RAM_36240 416da0df40f77eccb79c0c9591ccdf0c 330 Gene3D G3DSA:3.90.480.10 1 60 9.6E-11 T 13-10-2018 RAM_19555 b1bacacd461a26d305d5d19c409a3a38 285 Gene3D G3DSA:1.10.1040.10 155 284 8.8E-36 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RAM_19555 b1bacacd461a26d305d5d19c409a3a38 285 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 159 279 5.7E-29 T 13-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 RAM_19555 b1bacacd461a26d305d5d19c409a3a38 285 SUPERFAMILY SSF48179 158 281 4.08E-32 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RAM_19555 b1bacacd461a26d305d5d19c409a3a38 285 Gene3D G3DSA:3.40.50.720 1 153 1.1E-40 T 13-10-2018 RAM_19555 b1bacacd461a26d305d5d19c409a3a38 285 PIRSF PIRSF000103 1 285 5.5E-69 T 13-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 RAM_19555 b1bacacd461a26d305d5d19c409a3a38 285 SUPERFAMILY SSF51735 1 156 4.22E-32 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_19555 b1bacacd461a26d305d5d19c409a3a38 285 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 4 153 7.1E-31 T 13-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 RAM_44245 d4ed5b98cc273dd30638a4bb2f9cb6ec 637 SUPERFAMILY SSF90123 47 346 4.05E-15 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RAM_44245 d4ed5b98cc273dd30638a4bb2f9cb6ec 637 ProSitePatterns PS00211 ABC transporters family signature. 526 540 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_44245 d4ed5b98cc273dd30638a4bb2f9cb6ec 637 Pfam PF00005 ABC transporter 399 554 4.9E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_44245 d4ed5b98cc273dd30638a4bb2f9cb6ec 637 SMART SM00382 408 604 5.4E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_44245 d4ed5b98cc273dd30638a4bb2f9cb6ec 637 Gene3D G3DSA:3.40.50.300 378 635 9.4E-76 T 13-10-2018 RAM_44245 d4ed5b98cc273dd30638a4bb2f9cb6ec 637 Gene3D G3DSA:1.20.1560.10 42 349 2.9E-5 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RAM_44245 d4ed5b98cc273dd30638a4bb2f9cb6ec 637 SUPERFAMILY SSF52540 376 628 6.09E-68 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_19550 0f4b85e2e9e4b31dcb409ac94c847967 276 SUPERFAMILY SSF56281 31 246 2.57E-32 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_19550 0f4b85e2e9e4b31dcb409ac94c847967 276 Pfam PF00753 Metallo-beta-lactamase superfamily 44 222 3.2E-19 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_19550 0f4b85e2e9e4b31dcb409ac94c847967 276 Gene3D G3DSA:3.60.15.10 10 246 7.9E-50 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_19550 0f4b85e2e9e4b31dcb409ac94c847967 276 SMART SM00849 40 242 3.9E-13 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_18380 e312fc71d63b1dfcfba35e1061c2fc8f 317 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 36 67 - T 13-10-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_18380 e312fc71d63b1dfcfba35e1061c2fc8f 317 SUPERFAMILY SSF54427 203 304 4.2E-15 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_18380 e312fc71d63b1dfcfba35e1061c2fc8f 317 SUPERFAMILY SSF88946 7 91 2.0E-21 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_18380 e312fc71d63b1dfcfba35e1061c2fc8f 317 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 13 187 8.7E-22 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_18380 e312fc71d63b1dfcfba35e1061c2fc8f 317 Gene3D G3DSA:3.10.450.50 198 312 4.3E-16 T 13-10-2018 RAM_18380 e312fc71d63b1dfcfba35e1061c2fc8f 317 Pfam PF08281 Sigma-70, region 4 135 187 5.0E-15 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_18380 e312fc71d63b1dfcfba35e1061c2fc8f 317 Gene3D G3DSA:1.10.1740.10 2 102 6.0E-22 T 13-10-2018 RAM_18380 e312fc71d63b1dfcfba35e1061c2fc8f 317 Pfam PF12680 SnoaL-like domain 208 280 2.3E-7 T 13-10-2018 IPR037401 SnoaL-like domain RAM_18380 e312fc71d63b1dfcfba35e1061c2fc8f 317 TIGRFAM TIGR02960 SigX5: RNA polymerase sigma-70 factor, TIGR02960 family 9 317 3.6E-110 T 13-10-2018 IPR014305 RNA polymerase sigma-G type, actinobacteria RAM_18380 e312fc71d63b1dfcfba35e1061c2fc8f 317 SUPERFAMILY SSF88659 130 187 2.43E-11 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_18380 e312fc71d63b1dfcfba35e1061c2fc8f 317 Gene3D G3DSA:1.10.10.10 119 190 1.7E-13 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_18380 e312fc71d63b1dfcfba35e1061c2fc8f 317 Pfam PF04542 Sigma-70 region 2 16 81 1.5E-15 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_36715 a4dff035c1c665c0926a31ae5d11d14c 239 SUPERFAMILY SSF48498 103 209 9.93E-20 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_36715 a4dff035c1c665c0926a31ae5d11d14c 239 Gene3D G3DSA:1.10.357.10 21 214 1.4E-48 T 13-10-2018 RAM_36715 a4dff035c1c665c0926a31ae5d11d14c 239 Pfam PF00440 Bacterial regulatory proteins, tetR family 39 84 1.3E-15 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_36715 a4dff035c1c665c0926a31ae5d11d14c 239 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 59 82 6.6E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_36715 a4dff035c1c665c0926a31ae5d11d14c 239 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 52 6.6E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_36715 a4dff035c1c665c0926a31ae5d11d14c 239 SUPERFAMILY SSF46689 27 106 2.29E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_40205 6ca5de4e785daedbd1fd409333f8bf58 694 Gene3D G3DSA:2.80.10.50 35 165 1.9E-41 T 13-10-2018 RAM_40205 6ca5de4e785daedbd1fd409333f8bf58 694 Gene3D G3DSA:2.60.40.10 256 351 2.9E-7 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_40205 6ca5de4e785daedbd1fd409333f8bf58 694 SMART SM00458 37 166 1.5E-33 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_40205 6ca5de4e785daedbd1fd409333f8bf58 694 SUPERFAMILY SSF49265 262 360 9.9E-11 T 13-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 RAM_40205 6ca5de4e785daedbd1fd409333f8bf58 694 Pfam PF07995 Glucose / Sorbosone dehydrogenase 378 673 1.6E-66 T 13-10-2018 IPR012938 Glucose/Sorbosone dehydrogenase RAM_40205 6ca5de4e785daedbd1fd409333f8bf58 694 SUPERFAMILY SSF50952 370 674 1.14E-36 T 13-10-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 RAM_40205 6ca5de4e785daedbd1fd409333f8bf58 694 Pfam PF00652 Ricin-type beta-trefoil lectin domain 41 163 2.3E-31 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_40205 6ca5de4e785daedbd1fd409333f8bf58 694 SMART SM00060 269 349 1.0E-4 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 RAM_40205 6ca5de4e785daedbd1fd409333f8bf58 694 SMART SM00060 174 248 8.7 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 RAM_40205 6ca5de4e785daedbd1fd409333f8bf58 694 Gene3D G3DSA:2.60.40.10 172 255 6.4E-15 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_40205 6ca5de4e785daedbd1fd409333f8bf58 694 Gene3D G3DSA:2.120.10.30 352 693 1.6E-107 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RAM_40205 6ca5de4e785daedbd1fd409333f8bf58 694 SUPERFAMILY SSF49265 171 270 4.43E-7 T 13-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 RAM_40205 6ca5de4e785daedbd1fd409333f8bf58 694 SUPERFAMILY SSF50370 41 164 7.64E-42 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_39025 04b47f50090b47576f99e68dd0ddac2d 400 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 198 390 1.7E-39 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_39025 04b47f50090b47576f99e68dd0ddac2d 400 Gene3D G3DSA:3.60.40.10 171 399 2.3E-47 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_39025 04b47f50090b47576f99e68dd0ddac2d 400 Pfam PF00072 Response regulator receiver domain 17 123 3.7E-13 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_39025 04b47f50090b47576f99e68dd0ddac2d 400 SUPERFAMILY SSF52172 10 149 1.42E-19 T 13-10-2018 IPR011006 CheY-like superfamily RAM_39025 04b47f50090b47576f99e68dd0ddac2d 400 SUPERFAMILY SSF81606 186 385 3.4E-5 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_39025 04b47f50090b47576f99e68dd0ddac2d 400 Gene3D G3DSA:3.40.50.2300 12 158 1.1E-17 T 13-10-2018 RAM_39025 04b47f50090b47576f99e68dd0ddac2d 400 SMART SM00448 15 127 8.1E-8 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_39025 04b47f50090b47576f99e68dd0ddac2d 400 SMART SM00331 168 391 7.9E-14 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_18575 db75dad8ef517fcdb59076e7e02f0348 146 TIGRFAM TIGR00026 hi_GC_TIGR00026: deazaflavin-dependent oxidoreductase, nitroreductase family 34 142 5.5E-32 T 13-10-2018 IPR004378 F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 RAM_18575 db75dad8ef517fcdb59076e7e02f0348 146 Pfam PF04075 F420H(2)-dependent quinone reductase 14 143 7.3E-45 T 13-10-2018 IPR004378 F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 RAM_18575 db75dad8ef517fcdb59076e7e02f0348 146 Gene3D G3DSA:2.30.110.10 1 143 6.5E-53 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_20880 7d7db6d407a7308b5538d118a2738478 465 ProSitePatterns PS00561 CBM2a (carbohydrate-binding type-2) domain signature. 99 112 - T 13-10-2018 IPR018366 Carbohydrate-binding type-2, conserved site GO:0004553|GO:0005975|GO:0030246 RAM_20880 7d7db6d407a7308b5538d118a2738478 465 Gene3D G3DSA:2.60.40.290 27 137 2.8E-33 T 13-10-2018 IPR012291 CBM2, carbohydrate-binding domain superfamily GO:0004553|GO:0030247 RAM_20880 7d7db6d407a7308b5538d118a2738478 465 SMART SM00637 34 134 5.1E-43 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_20880 7d7db6d407a7308b5538d118a2738478 465 SUPERFAMILY SSF51445 159 463 5.1E-76 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_20880 7d7db6d407a7308b5538d118a2738478 465 Gene3D G3DSA:3.20.20.80 158 461 9.5E-90 T 13-10-2018 RAM_20880 7d7db6d407a7308b5538d118a2738478 465 SUPERFAMILY SSF49384 31 135 3.28E-29 T 13-10-2018 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily GO:0030246 RAM_20880 7d7db6d407a7308b5538d118a2738478 465 Pfam PF00150 Cellulase (glycosyl hydrolase family 5) 176 425 1.0E-46 T 13-10-2018 IPR001547 Glycoside hydrolase, family 5 GO:0004553|GO:0005975 RAM_20880 7d7db6d407a7308b5538d118a2738478 465 Pfam PF00553 Cellulose binding domain 34 134 1.1E-30 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_20880 7d7db6d407a7308b5538d118a2738478 465 ProSitePatterns PS00659 Glycosyl hydrolases family 5 signature. 288 297 - T 13-10-2018 IPR018087 Glycoside hydrolase, family 5, conserved site GO:0004553|GO:0005975 RAM_46705 d36eb1d50f922b4ab3455274c35ca909 407 Pfam PF03583 Secretory lipase 128 400 4.1E-64 T 13-10-2018 IPR005152 Lipase, secreted GO:0004806|GO:0016042 RAM_46705 d36eb1d50f922b4ab3455274c35ca909 407 PIRSF PIRSF029171 1 404 2.3E-78 T 13-10-2018 IPR005152 Lipase, secreted GO:0004806|GO:0016042 RAM_46705 d36eb1d50f922b4ab3455274c35ca909 407 SUPERFAMILY SSF53474 86 391 5.72E-21 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_46705 d36eb1d50f922b4ab3455274c35ca909 407 Gene3D G3DSA:3.40.50.1820 33 394 6.3E-108 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_46705 d36eb1d50f922b4ab3455274c35ca909 407 Gene3D G3DSA:1.10.260.130 233 323 6.3E-108 T 13-10-2018 RAM_33735 28e38512d661b66428c1966ef0f1ec43 183 Gene3D G3DSA:1.20.120.520 1 143 1.3E-7 T 13-10-2018 RAM_33735 28e38512d661b66428c1966ef0f1ec43 183 Pfam PF01814 Hemerythrin HHE cation binding domain 4 116 2.0E-10 T 13-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 RAM_33735 28e38512d661b66428c1966ef0f1ec43 183 TIGRFAM TIGR04537 encap_target: encapsulation C-terminal sorting signal 172 181 0.016 T 13-10-2018 RAM_06350 76cb1490633193312daa4cc32099d701 229 Gene3D G3DSA:3.40.50.300 1 224 1.0E-66 T 13-10-2018 RAM_06350 76cb1490633193312daa4cc32099d701 229 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_06350 76cb1490633193312daa4cc32099d701 229 Pfam PF00005 ABC transporter 19 166 5.6E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_06350 76cb1490633193312daa4cc32099d701 229 TIGRFAM TIGR02673 FtsE: cell division ATP-binding protein FtsE 1 214 3.1E-85 T 13-10-2018 IPR005286 Cell division protein FtsE, ATP-binding GO:0005524|GO:0051301 RAM_06350 76cb1490633193312daa4cc32099d701 229 SMART SM00382 28 215 1.6E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_06350 76cb1490633193312daa4cc32099d701 229 SUPERFAMILY SSF52540 1 220 3.65E-68 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_25385 66bc5bc0947e2da4522f82813bf660bc 111 PRINTS PR00421 Thioredoxin family signature 30 39 9.7E-8 T 13-10-2018 RAM_25385 66bc5bc0947e2da4522f82813bf660bc 111 PRINTS PR00421 Thioredoxin family signature 22 30 9.7E-8 T 13-10-2018 RAM_25385 66bc5bc0947e2da4522f82813bf660bc 111 PRINTS PR00421 Thioredoxin family signature 70 81 9.7E-8 T 13-10-2018 RAM_25385 66bc5bc0947e2da4522f82813bf660bc 111 TIGRFAM TIGR01068 thioredoxin: thioredoxin 9 104 6.9E-33 T 13-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 RAM_25385 66bc5bc0947e2da4522f82813bf660bc 111 Pfam PF00085 Thioredoxin 4 103 1.4E-26 T 13-10-2018 IPR013766 Thioredoxin domain GO:0045454 RAM_25385 66bc5bc0947e2da4522f82813bf660bc 111 ProSitePatterns PS00194 Thioredoxin family active site. 23 41 - T 13-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 RAM_25385 66bc5bc0947e2da4522f82813bf660bc 111 Gene3D G3DSA:3.40.30.10 4 109 2.2E-30 T 13-10-2018 RAM_25385 66bc5bc0947e2da4522f82813bf660bc 111 SUPERFAMILY SSF52833 2 106 6.06E-35 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RAM_25385 66bc5bc0947e2da4522f82813bf660bc 111 PIRSF PIRSF000077 1 106 1.8E-36 T 13-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 RAM_14660 13b03b1ea59ac7d8f08b4987674ad6d5 263 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 10 224 8.2E-49 T 13-10-2018 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type RAM_14660 13b03b1ea59ac7d8f08b4987674ad6d5 263 TIGRFAM TIGR03084 TIGR03084: TIGR03084 family protein 7 257 1.9E-104 T 13-10-2018 IPR017518 Conserved hypothetical protein CHP03084 RAM_14660 13b03b1ea59ac7d8f08b4987674ad6d5 263 Gene3D G3DSA:1.20.120.450 8 150 4.3E-17 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_14660 13b03b1ea59ac7d8f08b4987674ad6d5 263 Pfam PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain 11 146 3.8E-31 T 13-10-2018 IPR024344 Mycothiol-dependent maleylpyruvate isomerase, metal-binding domain GO:0046872 RAM_14660 13b03b1ea59ac7d8f08b4987674ad6d5 263 SUPERFAMILY SSF109854 2 152 5.04E-36 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_14660 13b03b1ea59ac7d8f08b4987674ad6d5 263 Pfam PF08608 Wyosine base formation 184 234 6.8E-6 T 13-10-2018 IPR013917 tRNA wybutosine-synthesis MetaCyc: PWY-7285|MetaCyc: PWY-7286 RAM_31375 149a8bcff1beabc74be0ece16cf7dc38 172 Gene3D G3DSA:2.40.380.10 1 164 6.0E-65 T 13-10-2018 IPR035930 FomD-like superfamily RAM_31375 149a8bcff1beabc74be0ece16cf7dc38 172 PIRSF PIRSF012622 1 171 1.5E-59 T 13-10-2018 IPR014465 Uncharacterised conserved protein UCP012622 RAM_31375 149a8bcff1beabc74be0ece16cf7dc38 172 Pfam PF04167 Protein of unknown function (DUF402) 53 120 5.8E-13 T 13-10-2018 IPR007295 Domain of unknown function DUF402 RAM_31375 149a8bcff1beabc74be0ece16cf7dc38 172 SUPERFAMILY SSF159234 4 169 5.23E-49 T 13-10-2018 IPR035930 FomD-like superfamily RAM_02290 ebfb91f1d7e7aa7b460fcd8aaa83a2e1 288 Gene3D G3DSA:3.40.50.170 92 288 7.7E-71 T 13-10-2018 RAM_02290 ebfb91f1d7e7aa7b460fcd8aaa83a2e1 288 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 11 288 1.8E-99 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 RAM_02290 ebfb91f1d7e7aa7b460fcd8aaa83a2e1 288 SUPERFAMILY SSF53328 94 288 2.09E-58 T 13-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RAM_02290 ebfb91f1d7e7aa7b460fcd8aaa83a2e1 288 Pfam PF00551 Formyl transferase 94 267 7.7E-38 T 13-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RAM_02290 ebfb91f1d7e7aa7b460fcd8aaa83a2e1 288 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 5 288 47.981 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 RAM_02290 ebfb91f1d7e7aa7b460fcd8aaa83a2e1 288 PIRSF PIRSF036480 5 288 1.3E-109 T 13-10-2018 RAM_02290 ebfb91f1d7e7aa7b460fcd8aaa83a2e1 288 SUPERFAMILY SSF55021 7 87 9.99E-15 T 13-10-2018 RAM_02290 ebfb91f1d7e7aa7b460fcd8aaa83a2e1 288 Gene3D G3DSA:3.30.70.260 4 90 9.1E-24 T 13-10-2018 RAM_02290 ebfb91f1d7e7aa7b460fcd8aaa83a2e1 288 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 116 143 3.1E-58 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 RAM_02290 ebfb91f1d7e7aa7b460fcd8aaa83a2e1 288 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 262 287 3.1E-58 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 RAM_02290 ebfb91f1d7e7aa7b460fcd8aaa83a2e1 288 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 240 262 3.1E-58 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 RAM_02290 ebfb91f1d7e7aa7b460fcd8aaa83a2e1 288 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 94 116 3.1E-58 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 RAM_02290 ebfb91f1d7e7aa7b460fcd8aaa83a2e1 288 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 42 54 3.1E-58 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 RAM_02290 ebfb91f1d7e7aa7b460fcd8aaa83a2e1 288 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 10 36 3.1E-58 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 RAM_44970 7c538e7e673e197e206521944f1d4874 111 Gene3D G3DSA:3.30.70.100 1 99 8.7E-29 T 13-10-2018 RAM_44970 7c538e7e673e197e206521944f1d4874 111 Pfam PF07110 EthD domain 13 87 1.1E-7 T 13-10-2018 IPR009799 EthD domain RAM_44970 7c538e7e673e197e206521944f1d4874 111 SUPERFAMILY SSF54909 1 97 3.07E-25 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_44970 7c538e7e673e197e206521944f1d4874 111 TIGRFAM TIGR02118 TIGR02118: conserved hypothetical protein 1 93 1.9E-20 T 13-10-2018 IPR009799 EthD domain RAM_18500 53215056f8dfd1c8598be80b27efa8e7 389 SUPERFAMILY SSF52540 114 201 4.25E-6 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_21710 675ed1efdf10124c7b8671ef188250a6 347 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 80 311 5.5E-24 T 13-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 RAM_21710 675ed1efdf10124c7b8671ef188250a6 347 Gene3D G3DSA:3.40.50.2000 165 334 2.7E-37 T 13-10-2018 RAM_21710 675ed1efdf10124c7b8671ef188250a6 347 SUPERFAMILY SSF53756 3 332 5.57E-67 T 13-10-2018 RAM_21710 675ed1efdf10124c7b8671ef188250a6 347 Gene3D G3DSA:3.40.50.2000 2 155 2.1E-6 T 13-10-2018 RAM_23595 43cc8dc4378d268bc85ec336e5664c1d 307 Gene3D G3DSA:3.20.20.100 1 306 2.6E-96 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_23595 43cc8dc4378d268bc85ec336e5664c1d 307 SUPERFAMILY SSF51430 2 294 9.69E-84 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_23595 43cc8dc4378d268bc85ec336e5664c1d 307 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 121 138 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 RAM_23595 43cc8dc4378d268bc85ec336e5664c1d 307 Pfam PF00248 Aldo/keto reductase family 1 292 4.6E-64 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain RAM_11015 66a4096c3172c745f1856680f204854a 203 SUPERFAMILY SSF46689 2 87 4.64E-22 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_11015 66a4096c3172c745f1856680f204854a 203 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 62 1.0E-19 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_11015 66a4096c3172c745f1856680f204854a 203 Gene3D G3DSA:1.10.357.10 1 196 3.9E-47 T 13-10-2018 RAM_11015 66a4096c3172c745f1856680f204854a 203 SUPERFAMILY SSF48498 97 190 6.14E-5 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_11015 66a4096c3172c745f1856680f204854a 203 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 3.6E-12 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_11015 66a4096c3172c745f1856680f204854a 203 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 3.6E-12 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_11015 66a4096c3172c745f1856680f204854a 203 ProSitePatterns PS01081 TetR-type HTH domain signature. 28 58 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RAM_17655 ba4867222b48899e07feabd95a518104 258 SUPERFAMILY SSF51735 3 245 2.64E-75 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_17655 ba4867222b48899e07feabd95a518104 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 4.9E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17655 ba4867222b48899e07feabd95a518104 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 4.9E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17655 ba4867222b48899e07feabd95a518104 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 4.9E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17655 ba4867222b48899e07feabd95a518104 258 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 138 166 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_17655 ba4867222b48899e07feabd95a518104 258 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 9 242 3.1E-57 T 13-10-2018 RAM_17655 ba4867222b48899e07feabd95a518104 258 Gene3D G3DSA:3.40.50.720 1 244 1.2E-75 T 13-10-2018 RAM_17655 ba4867222b48899e07feabd95a518104 258 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 187 0.0056 T 13-10-2018 RAM_17655 ba4867222b48899e07feabd95a518104 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 6.6E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17655 ba4867222b48899e07feabd95a518104 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 6.6E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17655 ba4867222b48899e07feabd95a518104 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 6.6E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17655 ba4867222b48899e07feabd95a518104 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 6.6E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17655 ba4867222b48899e07feabd95a518104 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 207 227 6.6E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17655 ba4867222b48899e07feabd95a518104 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 6.6E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_13225 18e764924bb505d76e933477a76315fa 272 Gene3D G3DSA:3.30.540.10 4 150 1.4E-42 T 13-10-2018 RAM_13225 18e764924bb505d76e933477a76315fa 272 Gene3D G3DSA:3.40.190.80 151 271 2.2E-30 T 13-10-2018 RAM_13225 18e764924bb505d76e933477a76315fa 272 SUPERFAMILY SSF56655 13 265 3.66E-66 T 13-10-2018 RAM_13225 18e764924bb505d76e933477a76315fa 272 PRINTS PR00377 Inositol monophosphatase superfamily signature 90 106 1.8E-40 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RAM_13225 18e764924bb505d76e933477a76315fa 272 PRINTS PR00377 Inositol monophosphatase superfamily signature 49 69 1.8E-40 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RAM_13225 18e764924bb505d76e933477a76315fa 272 PRINTS PR00377 Inositol monophosphatase superfamily signature 185 206 1.8E-40 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RAM_13225 18e764924bb505d76e933477a76315fa 272 PRINTS PR00377 Inositol monophosphatase superfamily signature 216 240 1.8E-40 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RAM_13225 18e764924bb505d76e933477a76315fa 272 PRINTS PR00377 Inositol monophosphatase superfamily signature 71 87 1.8E-40 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RAM_13225 18e764924bb505d76e933477a76315fa 272 PRINTS PR00377 Inositol monophosphatase superfamily signature 139 162 1.8E-40 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RAM_13225 18e764924bb505d76e933477a76315fa 272 Pfam PF00459 Inositol monophosphatase family 11 254 9.4E-58 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RAM_13225 18e764924bb505d76e933477a76315fa 272 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 219 233 - T 13-10-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 RAM_13225 18e764924bb505d76e933477a76315fa 272 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 90 103 - T 13-10-2018 IPR020583 Inositol monophosphatase, metal-binding site RAM_21000 44f20d01eda19ecfe2b8ffa46f2b9634 326 Pfam PF00106 short chain dehydrogenase 4 198 1.6E-51 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_21000 44f20d01eda19ecfe2b8ffa46f2b9634 326 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 4 190 0.0011 T 13-10-2018 RAM_21000 44f20d01eda19ecfe2b8ffa46f2b9634 326 SUPERFAMILY SSF51735 2 264 6.04E-70 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_21000 44f20d01eda19ecfe2b8ffa46f2b9634 326 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 7.1E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_21000 44f20d01eda19ecfe2b8ffa46f2b9634 326 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 7.1E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_21000 44f20d01eda19ecfe2b8ffa46f2b9634 326 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 7.1E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_21000 44f20d01eda19ecfe2b8ffa46f2b9634 326 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 205 225 7.1E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_21000 44f20d01eda19ecfe2b8ffa46f2b9634 326 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 7.1E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_21000 44f20d01eda19ecfe2b8ffa46f2b9634 326 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 7.1E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_21000 44f20d01eda19ecfe2b8ffa46f2b9634 326 Gene3D G3DSA:3.40.50.720 1 263 2.5E-70 T 13-10-2018 RAM_21000 44f20d01eda19ecfe2b8ffa46f2b9634 326 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 6.1E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_21000 44f20d01eda19ecfe2b8ffa46f2b9634 326 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 6.1E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_21000 44f20d01eda19ecfe2b8ffa46f2b9634 326 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 6.1E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_21000 44f20d01eda19ecfe2b8ffa46f2b9634 326 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_38760 dfa68e59aaf17743d65ed36dbb066d13 466 Pfam PF07690 Major Facilitator Superfamily 12 406 1.4E-51 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_38760 dfa68e59aaf17743d65ed36dbb066d13 466 Gene3D G3DSA:1.20.1720.10 8 218 3.1E-42 T 13-10-2018 RAM_38760 dfa68e59aaf17743d65ed36dbb066d13 466 Gene3D G3DSA:1.20.1250.20 255 460 3.0E-18 T 13-10-2018 RAM_38760 dfa68e59aaf17743d65ed36dbb066d13 466 SUPERFAMILY SSF103473 3 458 3.66E-61 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_08280 f90c134dfb49db2d33aededf666b1e4c 320 SUPERFAMILY SSF53590 3 315 7.72E-87 T 13-10-2018 IPR036452 Ribonucleoside hydrolase-like RAM_08280 f90c134dfb49db2d33aededf666b1e4c 320 Gene3D G3DSA:3.90.245.10 1 318 7.1E-99 T 13-10-2018 IPR036452 Ribonucleoside hydrolase-like RAM_08280 f90c134dfb49db2d33aededf666b1e4c 320 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 4 305 3.8E-86 T 13-10-2018 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain RAM_11235 51a2f24a002273ad88edf83282ad5547 567 SMART SM00465 222 303 2.4E-14 T 13-10-2018 IPR000305 GIY-YIG endonuclease RAM_11235 51a2f24a002273ad88edf83282ad5547 567 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 17 191 6.5E-30 T 13-10-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAM_11235 51a2f24a002273ad88edf83282ad5547 567 SMART SM00479 21 189 3.2E-51 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III RAM_11235 51a2f24a002273ad88edf83282ad5547 567 Pfam PF01541 GIY-YIG catalytic domain 224 298 4.8E-6 T 13-10-2018 IPR000305 GIY-YIG endonuclease RAM_11235 51a2f24a002273ad88edf83282ad5547 567 SUPERFAMILY SSF82771 222 302 2.62E-16 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 RAM_11235 51a2f24a002273ad88edf83282ad5547 567 SUPERFAMILY SSF53098 16 200 2.71E-54 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily RAM_11235 51a2f24a002273ad88edf83282ad5547 567 Pfam PF00929 Exonuclease 23 180 8.5E-32 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III RAM_11235 51a2f24a002273ad88edf83282ad5547 567 Gene3D G3DSA:3.40.1440.10 208 306 4.9E-25 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 RAM_11235 51a2f24a002273ad88edf83282ad5547 567 Gene3D G3DSA:3.30.420.10 16 188 1.7E-50 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RAM_43770 80b80cdf8673a36fdc057bd96268fd97 138 SMART SM00960 10 100 2.3E-30 T 13-10-2018 IPR004942 Roadblock/LAMTOR2 domain RAM_43770 80b80cdf8673a36fdc057bd96268fd97 138 Pfam PF03259 Roadblock/LC7 domain 11 100 1.6E-22 T 13-10-2018 IPR004942 Roadblock/LAMTOR2 domain RAM_43770 80b80cdf8673a36fdc057bd96268fd97 138 SUPERFAMILY SSF103196 3 127 5.06E-33 T 13-10-2018 RAM_43770 80b80cdf8673a36fdc057bd96268fd97 138 Gene3D G3DSA:3.30.450.30 7 131 6.3E-43 T 13-10-2018 RAM_37790 f13c0b3b2153f63be9f30b7ccd99b453 69 Pfam PF00553 Cellulose binding domain 2 66 4.3E-16 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_37790 f13c0b3b2153f63be9f30b7ccd99b453 69 SUPERFAMILY SSF49384 2 67 1.12E-14 T 13-10-2018 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily GO:0030246 RAM_37790 f13c0b3b2153f63be9f30b7ccd99b453 69 Gene3D G3DSA:2.60.40.290 1 69 8.0E-18 T 13-10-2018 IPR012291 CBM2, carbohydrate-binding domain superfamily GO:0004553|GO:0030247 RAM_37790 f13c0b3b2153f63be9f30b7ccd99b453 69 SMART SM00637 2 66 0.0031 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_15330 a732e698b1565a89eb77e1252381dfa7 307 Gene3D G3DSA:1.20.144.10 131 225 6.0E-13 T 13-10-2018 RAM_15330 a732e698b1565a89eb77e1252381dfa7 307 Pfam PF01569 PAP2 superfamily 141 217 4.2E-11 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RAM_15330 a732e698b1565a89eb77e1252381dfa7 307 SMART SM00014 106 214 0.0014 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RAM_15330 a732e698b1565a89eb77e1252381dfa7 307 SUPERFAMILY SSF48317 47 218 2.22E-15 T 13-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily RAM_39120 ed98703e4950c4f998c53c00ee100710 323 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 11 302 3.7E-60 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_39120 ed98703e4950c4f998c53c00ee100710 323 Pfam PF02470 MlaD protein 41 117 7.9E-15 T 13-10-2018 IPR003399 Mce/MlaD RAM_08055 47c9ef370a6b3c4e9be3491040671fc0 574 Gene3D G3DSA:1.20.1730.10 259 534 1.7E-14 T 13-10-2018 IPR038377 Sodium/glucose symporter superfamily RAM_08055 47c9ef370a6b3c4e9be3491040671fc0 574 Gene3D G3DSA:1.20.1730.10 20 230 1.3E-29 T 13-10-2018 IPR038377 Sodium/glucose symporter superfamily RAM_08055 47c9ef370a6b3c4e9be3491040671fc0 574 Pfam PF00474 Sodium:solute symporter family 302 488 5.6E-12 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 RAM_08055 47c9ef370a6b3c4e9be3491040671fc0 574 Pfam PF00474 Sodium:solute symporter family 31 203 9.8E-27 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 RAM_07320 832cb68ffb758778b1e206d3cb12e4bd 130 Pfam PF14435 SUKH-4 immunity protein 15 125 1.5E-12 T 13-10-2018 IPR025851 SUKH-4 immunity protein RAM_08400 7fc8b0752d63fc541a55dd35e35175aa 261 PIRSF PIRSF000090 2 261 6.2E-86 T 13-10-2018 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 RAM_08400 7fc8b0752d63fc541a55dd35e35175aa 261 Gene3D G3DSA:3.40.50.620 2 255 2.7E-86 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAM_08400 7fc8b0752d63fc541a55dd35e35175aa 261 Pfam PF01012 Electron transfer flavoprotein domain 26 209 2.2E-51 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 RAM_08400 7fc8b0752d63fc541a55dd35e35175aa 261 SMART SM00893 24 214 5.1E-58 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 RAM_08400 7fc8b0752d63fc541a55dd35e35175aa 261 SUPERFAMILY SSF52402 3 255 6.98E-75 T 13-10-2018 RAM_35350 70082e100f8a14bdada4addc88207abb 230 SUPERFAMILY SSF55718 123 216 8.48E-10 T 13-10-2018 IPR036527 SCP2 sterol-binding domain superfamily RAM_35350 70082e100f8a14bdada4addc88207abb 230 Pfam PF01638 HxlR-like helix-turn-helix 20 105 8.4E-23 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type RAM_35350 70082e100f8a14bdada4addc88207abb 230 Gene3D G3DSA:1.10.10.10 3 110 9.5E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_35350 70082e100f8a14bdada4addc88207abb 230 Gene3D G3DSA:3.30.1050.10 113 222 3.4E-11 T 13-10-2018 IPR036527 SCP2 sterol-binding domain superfamily RAM_35350 70082e100f8a14bdada4addc88207abb 230 SUPERFAMILY SSF46785 7 119 1.06E-25 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_45330 92dad241ec453236d68810d2504254e5 417 SUPERFAMILY SSF103473 21 400 9.55E-27 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_45330 92dad241ec453236d68810d2504254e5 417 PRINTS PR01035 Tetracycline resistance protein signature 293 317 3.3E-5 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RAM_45330 92dad241ec453236d68810d2504254e5 417 PRINTS PR01035 Tetracycline resistance protein signature 351 373 3.3E-5 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RAM_45330 92dad241ec453236d68810d2504254e5 417 PRINTS PR01035 Tetracycline resistance protein signature 379 399 3.3E-5 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RAM_45330 92dad241ec453236d68810d2504254e5 417 PRINTS PR01035 Tetracycline resistance protein signature 262 281 3.3E-5 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RAM_45330 92dad241ec453236d68810d2504254e5 417 PRINTS PR01035 Tetracycline resistance protein signature 233 249 3.3E-5 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RAM_45330 92dad241ec453236d68810d2504254e5 417 Gene3D G3DSA:1.20.1250.20 23 209 9.2E-10 T 13-10-2018 RAM_45330 92dad241ec453236d68810d2504254e5 417 Gene3D G3DSA:1.20.1250.20 217 407 1.4E-9 T 13-10-2018 RAM_45330 92dad241ec453236d68810d2504254e5 417 Pfam PF07690 Major Facilitator Superfamily 32 276 4.6E-11 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_28200 14a5091791b8d8a03b80181ff7dae89d 257 Pfam PF00106 short chain dehydrogenase 6 98 4.7E-27 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_28200 14a5091791b8d8a03b80181ff7dae89d 257 Gene3D G3DSA:3.40.50.720 3 162 1.6E-35 T 13-10-2018 RAM_28200 14a5091791b8d8a03b80181ff7dae89d 257 SUPERFAMILY SSF51735 6 153 2.53E-32 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_28200 14a5091791b8d8a03b80181ff7dae89d 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 29 45 1.7E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_28200 14a5091791b8d8a03b80181ff7dae89d 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 76 93 1.7E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_28200 14a5091791b8d8a03b80181ff7dae89d 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 55 74 1.7E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_02875 65ac884c13822c188823fe05d3e30a88 182 ProDom PD001462 35-EPIMERASE DTDP-4-DEHYDRORHAMNOSE ISOMERASE RMLC EPIMERASE RELATED DTDP-6-DEOXY-D-GLUCOSE-35-EPIMERASE DTDP-4-KETO-6-DEOXY-D-GLUCOSE DTDP-4-KETO-6-DEOXYGLUCOSE-35-EPIMERASE DTDP-L-RHAMNOSE 1 179 2.0E-71 T 13-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 RAM_02875 65ac884c13822c188823fe05d3e30a88 182 Pfam PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase 8 176 4.0E-57 T 13-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 RAM_02875 65ac884c13822c188823fe05d3e30a88 182 TIGRFAM TIGR01221 rmlC: dTDP-4-dehydrorhamnose 3,5-epimerase 8 177 5.3E-48 T 13-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 RAM_02875 65ac884c13822c188823fe05d3e30a88 182 SUPERFAMILY SSF51182 8 179 1.26E-57 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RAM_02875 65ac884c13822c188823fe05d3e30a88 182 Gene3D G3DSA:2.60.120.10 4 181 3.3E-60 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_36855 b9b5aee7aa7d0f7dab9252365856aa3a 62 SUPERFAMILY SSF54862 2 60 3.05E-10 T 13-10-2018 RAM_36855 b9b5aee7aa7d0f7dab9252365856aa3a 62 Gene3D G3DSA:3.30.70.20 1 62 6.3E-20 T 13-10-2018 RAM_36855 b9b5aee7aa7d0f7dab9252365856aa3a 62 Pfam PF13459 4Fe-4S single cluster domain 3 60 5.1E-14 T 13-10-2018 RAM_13835 2ef9ba86a637f66030a0b31ce2ea3c20 181 Gene3D G3DSA:1.20.1270.400 85 173 3.5E-25 T 13-10-2018 RAM_13835 2ef9ba86a637f66030a0b31ce2ea3c20 181 SMART SM00418 2 93 0.0024 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_13835 2ef9ba86a637f66030a0b31ce2ea3c20 181 Pfam PF12840 Helix-turn-helix domain 3 62 1.4E-10 T 13-10-2018 RAM_13835 2ef9ba86a637f66030a0b31ce2ea3c20 181 Gene3D G3DSA:1.10.10.10 1 79 2.2E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_13835 2ef9ba86a637f66030a0b31ce2ea3c20 181 SUPERFAMILY SSF46785 2 133 2.1E-15 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_06990 559a55d7d930db3f533ed86b5851ad33 235 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_06990 559a55d7d930db3f533ed86b5851ad33 235 Gene3D G3DSA:3.40.50.300 1 235 1.2E-62 T 13-10-2018 RAM_06990 559a55d7d930db3f533ed86b5851ad33 235 SMART SM00382 26 214 1.4E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_06990 559a55d7d930db3f533ed86b5851ad33 235 Pfam PF00005 ABC transporter 17 162 4.6E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_06990 559a55d7d930db3f533ed86b5851ad33 235 SUPERFAMILY SSF52540 2 233 4.26E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_02485 6954235837f16a6b7fbc7c73bc528849 268 Gene3D G3DSA:1.10.10.60 136 233 5.8E-17 T 13-10-2018 RAM_02485 6954235837f16a6b7fbc7c73bc528849 268 Pfam PF12833 Helix-turn-helix domain 154 230 3.5E-13 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_02485 6954235837f16a6b7fbc7c73bc528849 268 SMART SM00342 148 231 1.2E-11 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_32030 dc400f67a7efb5db2d65c04791acb079 734 SMART SM00421 653 710 2.3E-19 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_32030 dc400f67a7efb5db2d65c04791acb079 734 SUPERFAMILY SSF46894 646 710 4.42E-18 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_32030 dc400f67a7efb5db2d65c04791acb079 734 SUPERFAMILY SSF52540 10 225 1.28E-6 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_32030 dc400f67a7efb5db2d65c04791acb079 734 Pfam PF00196 Bacterial regulatory proteins, luxR family 655 709 2.2E-15 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_32030 dc400f67a7efb5db2d65c04791acb079 734 Pfam PF13191 AAA ATPase domain 7 159 2.2E-16 T 13-10-2018 RAM_32030 dc400f67a7efb5db2d65c04791acb079 734 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 670 686 3.9E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_32030 dc400f67a7efb5db2d65c04791acb079 734 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 686 698 3.9E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_32030 dc400f67a7efb5db2d65c04791acb079 734 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 656 670 3.9E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_32030 dc400f67a7efb5db2d65c04791acb079 734 ProSitePatterns PS00622 LuxR-type HTH domain signature. 670 697 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_45730 2bc81fdbc6dc10f98173821d1dd5dd8a 117 Gene3D G3DSA:1.10.10.10 5 117 5.1E-37 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_45730 2bc81fdbc6dc10f98173821d1dd5dd8a 117 SUPERFAMILY SSF46785 9 115 5.69E-30 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_45730 2bc81fdbc6dc10f98173821d1dd5dd8a 117 Pfam PF01638 HxlR-like helix-turn-helix 21 108 4.5E-27 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type RAM_02630 2d9ce89d4aa3adedb6e201b18bfb83cd 276 Gene3D G3DSA:3.40.190.80 163 275 5.0E-16 T 13-10-2018 RAM_02630 2d9ce89d4aa3adedb6e201b18bfb83cd 276 Pfam PF00459 Inositol monophosphatase family 21 266 1.6E-41 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RAM_02630 2d9ce89d4aa3adedb6e201b18bfb83cd 276 Gene3D G3DSA:3.30.540.10 12 155 3.5E-33 T 13-10-2018 RAM_02630 2d9ce89d4aa3adedb6e201b18bfb83cd 276 PRINTS PR00377 Inositol monophosphatase superfamily signature 191 212 1.9E-27 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RAM_02630 2d9ce89d4aa3adedb6e201b18bfb83cd 276 PRINTS PR00377 Inositol monophosphatase superfamily signature 222 246 1.9E-27 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RAM_02630 2d9ce89d4aa3adedb6e201b18bfb83cd 276 PRINTS PR00377 Inositol monophosphatase superfamily signature 53 73 1.9E-27 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RAM_02630 2d9ce89d4aa3adedb6e201b18bfb83cd 276 PRINTS PR00377 Inositol monophosphatase superfamily signature 146 169 1.9E-27 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RAM_02630 2d9ce89d4aa3adedb6e201b18bfb83cd 276 PRINTS PR00377 Inositol monophosphatase superfamily signature 75 91 1.9E-27 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RAM_02630 2d9ce89d4aa3adedb6e201b18bfb83cd 276 PRINTS PR00377 Inositol monophosphatase superfamily signature 97 113 1.9E-27 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RAM_02630 2d9ce89d4aa3adedb6e201b18bfb83cd 276 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 225 239 - T 13-10-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 RAM_02630 2d9ce89d4aa3adedb6e201b18bfb83cd 276 SUPERFAMILY SSF56655 18 273 2.09E-51 T 13-10-2018 RAM_18320 f730631b78ed18b7aa98dd8e16a7a074 316 Gene3D G3DSA:3.40.50.1820 2 316 2.0E-80 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_18320 f730631b78ed18b7aa98dd8e16a7a074 316 SUPERFAMILY SSF53474 39 313 1.25E-59 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_18320 f730631b78ed18b7aa98dd8e16a7a074 316 Pfam PF07859 alpha/beta hydrolase fold 87 293 1.6E-57 T 13-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 RAM_38380 1e7e09674ff2f6d03a0e87eb268875e8 144 Gene3D G3DSA:3.30.450.30 13 137 9.3E-38 T 13-10-2018 RAM_38380 1e7e09674ff2f6d03a0e87eb268875e8 144 Pfam PF03259 Roadblock/LC7 domain 16 106 9.5E-22 T 13-10-2018 IPR004942 Roadblock/LAMTOR2 domain RAM_38380 1e7e09674ff2f6d03a0e87eb268875e8 144 SUPERFAMILY SSF103196 14 135 1.22E-30 T 13-10-2018 RAM_38380 1e7e09674ff2f6d03a0e87eb268875e8 144 SMART SM00960 16 106 2.4E-26 T 13-10-2018 IPR004942 Roadblock/LAMTOR2 domain RAM_36860 97e88ed727bbb5d8a5690f84724e8387 270 SUPERFAMILY SSF48179 157 248 8.73E-9 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RAM_36860 97e88ed727bbb5d8a5690f84724e8387 270 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 152 1.3E-23 T 13-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 RAM_36860 97e88ed727bbb5d8a5690f84724e8387 270 Gene3D G3DSA:1.10.1040.10 156 259 2.7E-8 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RAM_36860 97e88ed727bbb5d8a5690f84724e8387 270 Gene3D G3DSA:3.40.50.720 2 155 2.2E-32 T 13-10-2018 RAM_36860 97e88ed727bbb5d8a5690f84724e8387 270 PIRSF PIRSF000103 1 261 3.9E-41 T 13-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 RAM_36860 97e88ed727bbb5d8a5690f84724e8387 270 SUPERFAMILY SSF51735 3 153 2.03E-26 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_11170 62bd8ea666cafef29c981a6b22b62f56 314 SUPERFAMILY SSF81464 22 123 3.92E-16 T 13-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_11170 62bd8ea666cafef29c981a6b22b62f56 314 Gene3D G3DSA:2.60.40.2600 133 310 6.9E-39 T 13-10-2018 RAM_11170 62bd8ea666cafef29c981a6b22b62f56 314 ProSitePatterns PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature. 195 248 - T 13-10-2018 IPR001505 Copper centre Cu(A) GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_11170 62bd8ea666cafef29c981a6b22b62f56 314 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 138 254 2.4E-16 T 13-10-2018 IPR002429 Cytochrome c oxidase subunit II-like C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_11170 62bd8ea666cafef29c981a6b22b62f56 314 SUPERFAMILY SSF49503 129 289 2.82E-36 T 13-10-2018 IPR008972 Cupredoxin RAM_11170 62bd8ea666cafef29c981a6b22b62f56 314 Gene3D G3DSA:1.10.287.90 45 126 1.9E-10 T 13-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_24325 c2d7c993b2409d3ef746e38cba80ff23 587 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 15 292 2.6E-62 T 13-10-2018 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 RAM_24325 c2d7c993b2409d3ef746e38cba80ff23 587 SUPERFAMILY SSF49785 346 578 2.13E-63 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_24325 c2d7c993b2409d3ef746e38cba80ff23 587 SMART SM00939 321 573 9.8E-80 T 13-10-2018 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 RAM_24325 c2d7c993b2409d3ef746e38cba80ff23 587 TIGRFAM TIGR00976 /NonD: hydrolase CocE/NonD family protein 11 577 1.8E-151 T 13-10-2018 IPR005674 CocE/Serine esterase GO:0016787 RAM_24325 c2d7c993b2409d3ef746e38cba80ff23 587 Gene3D G3DSA:3.40.50.1820 9 349 1.4E-106 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_24325 c2d7c993b2409d3ef746e38cba80ff23 587 Pfam PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain 334 573 5.8E-50 T 13-10-2018 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 RAM_24325 c2d7c993b2409d3ef746e38cba80ff23 587 Gene3D G3DSA:1.10.3020.10 144 237 1.4E-106 T 13-10-2018 RAM_24325 c2d7c993b2409d3ef746e38cba80ff23 587 SUPERFAMILY SSF53474 8 354 2.29E-54 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_24325 c2d7c993b2409d3ef746e38cba80ff23 587 Gene3D G3DSA:2.60.120.260 360 582 1.5E-75 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_44285 09f4666766aa925ba3ac2cb82f5d3259 105 Pfam PF00741 Gas vesicle protein 11 48 3.4E-13 T 13-10-2018 IPR000638 Gas vesicle protein GvpA GO:0005198|GO:0012506 RAM_44285 09f4666766aa925ba3ac2cb82f5d3259 105 Hamap MF_00576 Gas vesicle structural protein [gvpA]. 3 78 19.52 T 13-10-2018 IPR000638 Gas vesicle protein GvpA GO:0005198|GO:0012506 RAM_44285 09f4666766aa925ba3ac2cb82f5d3259 105 ProSitePatterns PS00234 Gas vesicles protein GVPa signature 1. 11 25 - T 13-10-2018 IPR018493 Gas vesicle protein GvpA, conserved site GO:0005198|GO:0012506 RAM_07720 35213853f5fbc21e89da069a09379d11 255 Pfam PF14023 Protein of unknown function (DUF4239) 49 248 1.8E-11 T 13-10-2018 IPR025333 Protein of unknown function DUF4239 RAM_04465 3021ab70006e19dfbf6404e0e780594d 396 SUPERFAMILY SSF48264 8 396 2.62E-93 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_04465 3021ab70006e19dfbf6404e0e780594d 396 Gene3D G3DSA:1.10.630.10 6 396 5.4E-121 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_04465 3021ab70006e19dfbf6404e0e780594d 396 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 338 347 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RAM_04465 3021ab70006e19dfbf6404e0e780594d 396 PRINTS PR00359 B-class P450 signature 269 280 8.1E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_04465 3021ab70006e19dfbf6404e0e780594d 396 PRINTS PR00359 B-class P450 signature 345 356 8.1E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_04465 3021ab70006e19dfbf6404e0e780594d 396 PRINTS PR00359 B-class P450 signature 151 166 8.1E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_04465 3021ab70006e19dfbf6404e0e780594d 396 PRINTS PR00359 B-class P450 signature 315 330 8.1E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_04465 3021ab70006e19dfbf6404e0e780594d 396 PRINTS PR00359 B-class P450 signature 134 150 8.1E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_04465 3021ab70006e19dfbf6404e0e780594d 396 PRINTS PR00359 B-class P450 signature 287 314 8.1E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_04465 3021ab70006e19dfbf6404e0e780594d 396 PRINTS PR00359 B-class P450 signature 87 98 8.1E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_04465 3021ab70006e19dfbf6404e0e780594d 396 PRINTS PR00359 B-class P450 signature 188 210 8.1E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_04465 3021ab70006e19dfbf6404e0e780594d 396 PRINTS PR00359 B-class P450 signature 336 345 8.1E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_04465 3021ab70006e19dfbf6404e0e780594d 396 Pfam PF00067 Cytochrome P450 270 365 4.3E-19 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_04465 3021ab70006e19dfbf6404e0e780594d 396 PRINTS PR00385 P450 superfamily signature 269 280 3.5E-8 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_04465 3021ab70006e19dfbf6404e0e780594d 396 PRINTS PR00385 P450 superfamily signature 345 356 3.5E-8 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_04465 3021ab70006e19dfbf6404e0e780594d 396 PRINTS PR00385 P450 superfamily signature 336 345 3.5E-8 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_04465 3021ab70006e19dfbf6404e0e780594d 396 PRINTS PR00385 P450 superfamily signature 234 251 3.5E-8 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_06690 f922f0ba8272f93a8333101b90a71802 264 Gene3D G3DSA:1.10.10.60 11 90 3.1E-25 T 13-10-2018 RAM_06690 f922f0ba8272f93a8333101b90a71802 264 SUPERFAMILY SSF46689 31 94 5.64E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_06690 f922f0ba8272f93a8333101b90a71802 264 Pfam PF02909 Tetracyclin repressor, C-terminal all-alpha domain 103 255 3.2E-13 T 13-10-2018 IPR004111 Tetracycline transcriptional regulator, TetR, C-terminal GO:0045892 RAM_06690 f922f0ba8272f93a8333101b90a71802 264 SUPERFAMILY SSF48498 103 257 2.67E-22 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_06690 f922f0ba8272f93a8333101b90a71802 264 Pfam PF00440 Bacterial regulatory proteins, tetR family 40 84 6.5E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_06690 f922f0ba8272f93a8333101b90a71802 264 Gene3D G3DSA:1.10.357.10 91 259 2.6E-35 T 13-10-2018 RAM_34750 07a871a27239198da6d1dfbf1748d464 387 Gene3D G3DSA:1.10.10.10 1 77 1.7E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_34750 07a871a27239198da6d1dfbf1748d464 387 Pfam PF00480 ROK family 85 366 1.7E-40 T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 RAM_34750 07a871a27239198da6d1dfbf1748d464 387 Gene3D G3DSA:3.30.420.40 90 366 8.6E-67 T 13-10-2018 RAM_34750 07a871a27239198da6d1dfbf1748d464 387 Pfam PF12802 MarR family 18 67 1.3E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_34750 07a871a27239198da6d1dfbf1748d464 387 SUPERFAMILY SSF46785 10 72 3.03E-15 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_34750 07a871a27239198da6d1dfbf1748d464 387 SUPERFAMILY SSF53067 82 371 3.41E-42 T 13-10-2018 RAM_34750 07a871a27239198da6d1dfbf1748d464 387 Gene3D G3DSA:3.30.420.40 204 356 8.6E-67 T 13-10-2018 RAM_41980 aa0d058e50289314a0b5fcf61ea470ee 170 TIGRFAM TIGR02983 SigE-fam_strep: RNA polymerase sigma-70 factor, sigma-E family 9 165 3.7E-44 T 13-10-2018 IPR014325 RNA polymerase sigma-E factor, actinobacteria GO:0016987 RAM_41980 aa0d058e50289314a0b5fcf61ea470ee 170 Gene3D G3DSA:1.10.1740.10 6 80 1.3E-10 T 13-10-2018 RAM_41980 aa0d058e50289314a0b5fcf61ea470ee 170 Pfam PF04542 Sigma-70 region 2 14 80 1.4E-11 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_41980 aa0d058e50289314a0b5fcf61ea470ee 170 SUPERFAMILY SSF88946 12 92 3.06E-15 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_41980 aa0d058e50289314a0b5fcf61ea470ee 170 Gene3D G3DSA:1.10.10.10 91 165 3.8E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_41980 aa0d058e50289314a0b5fcf61ea470ee 170 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 12 162 4.2E-22 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_41980 aa0d058e50289314a0b5fcf61ea470ee 170 Pfam PF08281 Sigma-70, region 4 109 160 2.3E-16 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_41980 aa0d058e50289314a0b5fcf61ea470ee 170 SUPERFAMILY SSF88659 103 165 3.05E-16 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_04460 2c82de8a229c2e994903f99984f4a73a 64 PRINTS PR00352 3Fe-4S ferredoxin signature 16 26 9.0E-5 T 13-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 RAM_04460 2c82de8a229c2e994903f99984f4a73a 64 PRINTS PR00352 3Fe-4S ferredoxin signature 48 60 9.0E-5 T 13-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 RAM_04460 2c82de8a229c2e994903f99984f4a73a 64 PRINTS PR00352 3Fe-4S ferredoxin signature 5 16 9.0E-5 T 13-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 RAM_04460 2c82de8a229c2e994903f99984f4a73a 64 SUPERFAMILY SSF54862 2 62 2.06E-11 T 13-10-2018 RAM_04460 2c82de8a229c2e994903f99984f4a73a 64 Gene3D G3DSA:3.30.70.20 1 64 4.3E-16 T 13-10-2018 RAM_04460 2c82de8a229c2e994903f99984f4a73a 64 Pfam PF06902 Divergent 4Fe-4S mono-cluster 2 62 1.4E-11 T 13-10-2018 IPR010693 Divergent 4Fe-4S mono-cluster RAM_05235 391b66be03a181fc108482e086d062dc 468 Gene3D G3DSA:3.30.70.2450 182 267 1.4E-102 T 13-10-2018 RAM_05235 391b66be03a181fc108482e086d062dc 468 SUPERFAMILY SSF51905 2 346 4.77E-63 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_05235 391b66be03a181fc108482e086d062dc 468 Pfam PF01494 FAD binding domain 2 336 9.4E-77 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_05235 391b66be03a181fc108482e086d062dc 468 Gene3D G3DSA:3.50.50.60 5 336 1.4E-102 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_05235 391b66be03a181fc108482e086d062dc 468 Gene3D G3DSA:3.40.30.120 372 467 1.8E-10 T 13-10-2018 RAM_05235 391b66be03a181fc108482e086d062dc 468 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 4 26 1.4E-33 T 13-10-2018 RAM_05235 391b66be03a181fc108482e086d062dc 468 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 293 309 1.4E-33 T 13-10-2018 RAM_05235 391b66be03a181fc108482e086d062dc 468 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 278 293 1.4E-33 T 13-10-2018 RAM_05235 391b66be03a181fc108482e086d062dc 468 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 152 167 1.4E-33 T 13-10-2018 RAM_00150 b23a1e15e630468e627dd26573089570 212 Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 172 212 1.5E-11 T 13-10-2018 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RAM_00150 b23a1e15e630468e627dd26573089570 212 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 39 113 1.6E-18 T 13-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RAM_00150 b23a1e15e630468e627dd26573089570 212 Gene3D G3DSA:2.30.110.10 9 212 8.9E-59 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_00150 b23a1e15e630468e627dd26573089570 212 SUPERFAMILY SSF50475 13 212 6.09E-48 T 13-10-2018 RAM_00150 b23a1e15e630468e627dd26573089570 212 PIRSF PIRSF000190 11 212 4.5E-52 T 13-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RAM_13400 72a78027c1a7551933b847d8edadf24e 211 TIGRFAM TIGR03424 urea_degr_1: urea carboxylase-associated protein 1 14 204 3.4E-97 T 13-10-2018 IPR017791 Urea carboxylase-associated protein 1 RAM_13400 72a78027c1a7551933b847d8edadf24e 211 Pfam PF09347 Domain of unknown function (DUF1989) 15 179 2.4E-59 T 13-10-2018 IPR018959 Protein of unknown function DUF1989 RAM_41450 60e83910acbb065bd63d531e1889176c 207 Gene3D G3DSA:3.60.15.10 20 204 2.0E-50 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_41450 60e83910acbb065bd63d531e1889176c 207 SMART SM00849 24 188 1.2E-37 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_41450 60e83910acbb065bd63d531e1889176c 207 Pfam PF00753 Metallo-beta-lactamase superfamily 25 188 3.4E-22 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_41450 60e83910acbb065bd63d531e1889176c 207 SUPERFAMILY SSF56281 9 199 2.17E-46 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_06205 0adcffa78bd6c537adbe19a420105521 140 Gene3D G3DSA:3.40.250.10 10 130 2.5E-27 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily RAM_06205 0adcffa78bd6c537adbe19a420105521 140 Pfam PF00581 Rhodanese-like domain 29 123 1.5E-12 T 13-10-2018 IPR001763 Rhodanese-like domain RAM_06205 0adcffa78bd6c537adbe19a420105521 140 SUPERFAMILY SSF52821 23 130 1.19E-24 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily RAM_06205 0adcffa78bd6c537adbe19a420105521 140 SMART SM00450 27 127 1.2E-13 T 13-10-2018 IPR001763 Rhodanese-like domain RAM_27600 d93c1f3b9048a3aa2fc42b6415fba0c1 377 Gene3D G3DSA:3.40.50.11450 1 374 7.0E-118 T 13-10-2018 RAM_27600 d93c1f3b9048a3aa2fc42b6415fba0c1 377 Gene3D G3DSA:3.40.50.2000 192 362 7.0E-118 T 13-10-2018 RAM_27600 d93c1f3b9048a3aa2fc42b6415fba0c1 377 Pfam PF06722 Protein of unknown function (DUF1205) 170 264 1.8E-18 T 13-10-2018 IPR010610 Domain of unknown function DUF1205 RAM_27600 d93c1f3b9048a3aa2fc42b6415fba0c1 377 SUPERFAMILY SSF53756 1 377 7.14E-74 T 13-10-2018 RAM_37325 56fa03a57d7fa85082094ba6f42b5d9b 303 Gene3D G3DSA:3.40.50.720 1 162 6.2E-56 T 13-10-2018 RAM_37325 56fa03a57d7fa85082094ba6f42b5d9b 303 TIGRFAM TIGR01505 tartro_sem_red: 2-hydroxy-3-oxopropionate reductase 4 291 2.4E-107 T 13-10-2018 IPR006398 2-hydroxy-3-oxopropionate reductase GO:0008679|GO:0046487|GO:0055114 KEGG: 00630+1.1.1.60 RAM_37325 56fa03a57d7fa85082094ba6f42b5d9b 303 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 165 282 2.6E-35 T 13-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 RAM_37325 56fa03a57d7fa85082094ba6f42b5d9b 303 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 6 19 - T 13-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 RAM_37325 56fa03a57d7fa85082094ba6f42b5d9b 303 SUPERFAMILY SSF51735 3 163 8.91E-48 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_37325 56fa03a57d7fa85082094ba6f42b5d9b 303 SUPERFAMILY SSF48179 163 291 2.04E-33 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RAM_37325 56fa03a57d7fa85082094ba6f42b5d9b 303 PIRSF PIRSF000103 1 294 5.5E-80 T 13-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 RAM_37325 56fa03a57d7fa85082094ba6f42b5d9b 303 Gene3D G3DSA:1.10.1040.10 163 292 5.6E-37 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RAM_37325 56fa03a57d7fa85082094ba6f42b5d9b 303 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 162 2.4E-50 T 13-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 RAM_28540 9d8038887dc1f3250bc3f343e9400688 35 Pfam PF09363 XFP C-terminal domain 1 33 7.6E-8 T 13-10-2018 IPR018969 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, C-terminal GO:0005975|GO:0016832 RAM_28540 9d8038887dc1f3250bc3f343e9400688 35 Gene3D G3DSA:3.40.50.920 1 35 1.6E-7 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RAM_47490 c325a80d8ceb03a8db5448ef25e606a7 218 Pfam PF00196 Bacterial regulatory proteins, luxR family 151 207 2.5E-21 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_47490 c325a80d8ceb03a8db5448ef25e606a7 218 Gene3D G3DSA:3.40.50.12740 2 213 1.2E-71 T 13-10-2018 RAM_47490 c325a80d8ceb03a8db5448ef25e606a7 218 SMART SM00448 2 114 1.2E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_47490 c325a80d8ceb03a8db5448ef25e606a7 218 Pfam PF00072 Response regulator receiver domain 4 114 3.2E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_47490 c325a80d8ceb03a8db5448ef25e606a7 218 SUPERFAMILY SSF46894 143 213 2.31E-23 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_47490 c325a80d8ceb03a8db5448ef25e606a7 218 ProSitePatterns PS00622 LuxR-type HTH domain signature. 167 194 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_47490 c325a80d8ceb03a8db5448ef25e606a7 218 SMART SM00421 150 207 1.2E-27 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_47490 c325a80d8ceb03a8db5448ef25e606a7 218 SUPERFAMILY SSF52172 2 134 2.7E-32 T 13-10-2018 IPR011006 CheY-like superfamily RAM_47490 c325a80d8ceb03a8db5448ef25e606a7 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 183 195 7.9E-15 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_47490 c325a80d8ceb03a8db5448ef25e606a7 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 153 167 7.9E-15 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_47490 c325a80d8ceb03a8db5448ef25e606a7 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 167 183 7.9E-15 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_05055 45ef338b0420c94f6646f6ef2fa7f128 165 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 5 156 32.816 T 13-10-2018 IPR033747 Class I PurE RAM_05055 45ef338b0420c94f6646f6ef2fa7f128 165 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 5 159 4.0E-65 T 13-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 RAM_05055 45ef338b0420c94f6646f6ef2fa7f128 165 SUPERFAMILY SSF52255 4 161 5.49E-66 T 13-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 RAM_05055 45ef338b0420c94f6646f6ef2fa7f128 165 PIRSF PIRSF001338 1 163 3.6E-69 T 13-10-2018 IPR024694 PurE, prokaryotic type GO:0006189 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234 RAM_05055 45ef338b0420c94f6646f6ef2fa7f128 165 Pfam PF00731 AIR carboxylase 4 149 1.1E-65 T 13-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 RAM_05055 45ef338b0420c94f6646f6ef2fa7f128 165 Gene3D G3DSA:3.40.50.7700 1 165 1.7E-74 T 13-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 RAM_05055 45ef338b0420c94f6646f6ef2fa7f128 165 SMART SM01001 3 152 4.2E-97 T 13-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 RAM_28870 f9e1c6cb750a30f08f5c108c94eb7af6 179 Gene3D G3DSA:3.90.1570.10 3 177 1.7E-28 T 13-10-2018 RAM_28870 f9e1c6cb750a30f08f5c108c94eb7af6 179 Pfam PF05685 Putative restriction endonuclease 17 164 4.3E-27 T 13-10-2018 IPR008538 Domain of unknown function DUF820 RAM_28870 f9e1c6cb750a30f08f5c108c94eb7af6 179 SUPERFAMILY SSF52980 4 160 2.84E-30 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 RAM_23305 8563d8b37500d0bcdf574319e14cc19e 638 Gene3D G3DSA:2.40.40.20 513 634 1.5E-26 T 13-10-2018 RAM_23305 8563d8b37500d0bcdf574319e14cc19e 638 Pfam PF01568 Molydopterin dinucleotide binding domain 524 627 2.5E-23 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 RAM_23305 8563d8b37500d0bcdf574319e14cc19e 638 Pfam PF00384 Molybdopterin oxidoreductase 11 433 1.3E-77 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_23305 8563d8b37500d0bcdf574319e14cc19e 638 SUPERFAMILY SSF50692 513 635 2.94E-29 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily RAM_23305 8563d8b37500d0bcdf574319e14cc19e 638 SUPERFAMILY SSF53706 11 484 3.14E-161 T 13-10-2018 RAM_23305 8563d8b37500d0bcdf574319e14cc19e 638 Gene3D G3DSA:3.40.228.10 89 288 1.0E-169 T 13-10-2018 RAM_23305 8563d8b37500d0bcdf574319e14cc19e 638 Gene3D G3DSA:3.40.50.740 16 476 1.0E-169 T 13-10-2018 RAM_18000 9360e827789459f0031859851d801599 229 SMART SM00862 149 225 1.7E-24 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_18000 9360e827789459f0031859851d801599 229 SUPERFAMILY SSF52172 4 123 1.57E-39 T 13-10-2018 IPR011006 CheY-like superfamily RAM_18000 9360e827789459f0031859851d801599 229 Gene3D G3DSA:3.40.50.2300 2 123 2.4E-36 T 13-10-2018 RAM_18000 9360e827789459f0031859851d801599 229 SMART SM00448 3 113 1.3E-38 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_18000 9360e827789459f0031859851d801599 229 Gene3D G3DSA:1.10.10.10 125 226 1.1E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_18000 9360e827789459f0031859851d801599 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 150 225 1.1E-23 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_18000 9360e827789459f0031859851d801599 229 SUPERFAMILY SSF46894 131 226 5.95E-27 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_18000 9360e827789459f0031859851d801599 229 Pfam PF00072 Response regulator receiver domain 5 114 7.6E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_21715 d9b340cc3e45ae9186d2eeac515c27f6 492 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 322 460 8.2E-29 T 13-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 RAM_21715 d9b340cc3e45ae9186d2eeac515c27f6 492 Pfam PF13242 HAD-hyrolase-like 413 484 5.3E-13 T 13-10-2018 RAM_21715 d9b340cc3e45ae9186d2eeac515c27f6 492 SUPERFAMILY SSF56784 322 485 8.7E-44 T 13-10-2018 IPR036412 HAD-like superfamily RAM_21715 d9b340cc3e45ae9186d2eeac515c27f6 492 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 322 460 7.6E-32 T 13-10-2018 IPR006543 Histidinol-phosphate phosphatase GO:0016791 RAM_21715 d9b340cc3e45ae9186d2eeac515c27f6 492 Pfam PF00535 Glycosyl transferase family 2 8 112 6.3E-13 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RAM_21715 d9b340cc3e45ae9186d2eeac515c27f6 492 Gene3D G3DSA:3.90.550.10 4 192 9.3E-26 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_21715 d9b340cc3e45ae9186d2eeac515c27f6 492 Gene3D G3DSA:3.40.50.1000 306 489 4.0E-46 T 13-10-2018 IPR023214 HAD superfamily RAM_21715 d9b340cc3e45ae9186d2eeac515c27f6 492 SUPERFAMILY SSF53448 8 190 9.64E-31 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_21715 d9b340cc3e45ae9186d2eeac515c27f6 492 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 414 458 1.8E-8 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_46155 864b29921b21ea1f3516f16445347fb5 187 Gene3D G3DSA:3.90.79.10 8 184 1.5E-44 T 13-10-2018 RAM_46155 864b29921b21ea1f3516f16445347fb5 187 TIGRFAM TIGR02150 IPP_isom_1: isopentenyl-diphosphate delta-isomerase 12 173 6.8E-36 T 13-10-2018 IPR011876 Isopentenyl-diphosphate delta-isomerase, type 1 GO:0004452|GO:0008299 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922|Reactome: R-HSA-191273 RAM_46155 864b29921b21ea1f3516f16445347fb5 187 SUPERFAMILY SSF55811 10 174 5.15E-39 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RAM_46155 864b29921b21ea1f3516f16445347fb5 187 Pfam PF00293 NUDIX domain 38 159 4.4E-19 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RAM_46155 864b29921b21ea1f3516f16445347fb5 187 PIRSF PIRSF018427 2 183 1.6E-45 T 13-10-2018 IPR011876 Isopentenyl-diphosphate delta-isomerase, type 1 GO:0004452|GO:0008299 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922|Reactome: R-HSA-191273 RAM_46155 864b29921b21ea1f3516f16445347fb5 187 Hamap MF_00202 Isopentenyl-diphosphate Delta-isomerase [idi]. 10 186 28.915 T 13-10-2018 IPR011876 Isopentenyl-diphosphate delta-isomerase, type 1 GO:0004452|GO:0008299 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922|Reactome: R-HSA-191273 RAM_13420 8674e8ca4a3f55bbe4c6c8527084f6d6 407 SMART SM00341 226 306 1.4E-15 T 13-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 RAM_13420 8674e8ca4a3f55bbe4c6c8527084f6d6 407 SMART SM00474 20 187 2.3E-43 T 13-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 RAM_13420 8674e8ca4a3f55bbe4c6c8527084f6d6 407 SUPERFAMILY SSF47819 207 317 5.01E-24 T 13-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 RAM_13420 8674e8ca4a3f55bbe4c6c8527084f6d6 407 Pfam PF00570 HRDC domain 230 294 1.6E-14 T 13-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 RAM_13420 8674e8ca4a3f55bbe4c6c8527084f6d6 407 Gene3D G3DSA:3.30.420.10 4 208 1.8E-73 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RAM_13420 8674e8ca4a3f55bbe4c6c8527084f6d6 407 SUPERFAMILY SSF53098 8 224 5.24E-57 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily RAM_13420 8674e8ca4a3f55bbe4c6c8527084f6d6 407 Gene3D G3DSA:1.10.150.80 315 407 6.6E-29 T 13-10-2018 RAM_13420 8674e8ca4a3f55bbe4c6c8527084f6d6 407 Pfam PF01612 3'-5' exonuclease 22 186 6.8E-37 T 13-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 RAM_13420 8674e8ca4a3f55bbe4c6c8527084f6d6 407 Gene3D G3DSA:1.10.150.80 211 308 5.3E-26 T 13-10-2018 RAM_24230 361c9e4768a82c1c9cc3dc4c165d8ac9 423 Gene3D G3DSA:3.30.470.20 116 422 1.9E-71 T 13-10-2018 RAM_24230 361c9e4768a82c1c9cc3dc4c165d8ac9 423 Pfam PF13535 ATP-grasp domain 160 297 2.1E-14 T 13-10-2018 RAM_24230 361c9e4768a82c1c9cc3dc4c165d8ac9 423 SMART SM01209 122 295 0.0059 T 13-10-2018 RAM_24230 361c9e4768a82c1c9cc3dc4c165d8ac9 423 SUPERFAMILY SSF56059 114 336 7.95E-40 T 13-10-2018 RAM_24230 361c9e4768a82c1c9cc3dc4c165d8ac9 423 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 287 294 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RAM_44010 accc69c871f251e6e1292ed8e63708c6 272 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 5 263 7.8E-79 T 13-10-2018 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RAM_44010 accc69c871f251e6e1292ed8e63708c6 272 Pfam PF08543 Phosphomethylpyrimidine kinase 12 261 2.8E-79 T 13-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 RAM_44010 accc69c871f251e6e1292ed8e63708c6 272 Gene3D G3DSA:3.40.1190.20 1 271 1.6E-88 T 13-10-2018 IPR029056 Ribokinase-like RAM_44010 accc69c871f251e6e1292ed8e63708c6 272 SUPERFAMILY SSF53613 1 268 2.34E-74 T 13-10-2018 IPR029056 Ribokinase-like RAM_06735 739738cdb445ee27fa570570b35b48d2 207 SUPERFAMILY SSF53335 12 186 1.09E-37 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_06735 739738cdb445ee27fa570570b35b48d2 207 Gene3D G3DSA:3.40.50.150 17 203 6.7E-45 T 13-10-2018 RAM_06735 739738cdb445ee27fa570570b35b48d2 207 Pfam PF13649 Methyltransferase domain 51 141 6.3E-17 T 13-10-2018 RAM_05695 32a03ed8e61d990eb88d83ea42f7b466 682 Gene3D G3DSA:3.40.228.10 130 325 8.0E-150 T 13-10-2018 RAM_05695 32a03ed8e61d990eb88d83ea42f7b466 682 Gene3D G3DSA:2.20.25.90 1 48 1.6E-8 T 13-10-2018 RAM_05695 32a03ed8e61d990eb88d83ea42f7b466 682 Pfam PF00384 Molybdopterin oxidoreductase 52 472 8.7E-70 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_05695 32a03ed8e61d990eb88d83ea42f7b466 682 Pfam PF01568 Molydopterin dinucleotide binding domain 566 672 3.6E-28 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 RAM_05695 32a03ed8e61d990eb88d83ea42f7b466 682 SMART SM00926 1 49 1.8E-9 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_05695 32a03ed8e61d990eb88d83ea42f7b466 682 Gene3D G3DSA:2.40.40.20 555 678 3.0E-39 T 13-10-2018 RAM_05695 32a03ed8e61d990eb88d83ea42f7b466 682 SUPERFAMILY SSF53706 2 566 1.05E-165 T 13-10-2018 RAM_05695 32a03ed8e61d990eb88d83ea42f7b466 682 SUPERFAMILY SSF50692 526 675 9.04E-45 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily RAM_05695 32a03ed8e61d990eb88d83ea42f7b466 682 Gene3D G3DSA:3.40.50.740 57 522 8.0E-150 T 13-10-2018 RAM_03880 2b5a97f973920245cde41cd1cbb5e8d8 151 SUPERFAMILY SSF54593 5 120 2.95E-17 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_03880 2b5a97f973920245cde41cd1cbb5e8d8 151 Gene3D G3DSA:3.10.180.10 1 123 4.7E-50 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_03880 2b5a97f973920245cde41cd1cbb5e8d8 151 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 93 4.3E-10 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RAM_36675 c8b17d319c849a822f9de041c31eb825 409 PRINTS PR00359 B-class P450 signature 145 161 3.2E-51 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_36675 c8b17d319c849a822f9de041c31eb825 409 PRINTS PR00359 B-class P450 signature 349 358 3.2E-51 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_36675 c8b17d319c849a822f9de041c31eb825 409 PRINTS PR00359 B-class P450 signature 162 177 3.2E-51 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_36675 c8b17d319c849a822f9de041c31eb825 409 PRINTS PR00359 B-class P450 signature 358 369 3.2E-51 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_36675 c8b17d319c849a822f9de041c31eb825 409 PRINTS PR00359 B-class P450 signature 282 293 3.2E-51 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_36675 c8b17d319c849a822f9de041c31eb825 409 PRINTS PR00359 B-class P450 signature 199 221 3.2E-51 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_36675 c8b17d319c849a822f9de041c31eb825 409 PRINTS PR00359 B-class P450 signature 98 109 3.2E-51 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_36675 c8b17d319c849a822f9de041c31eb825 409 PRINTS PR00359 B-class P450 signature 328 343 3.2E-51 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_36675 c8b17d319c849a822f9de041c31eb825 409 PRINTS PR00359 B-class P450 signature 300 327 3.2E-51 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_36675 c8b17d319c849a822f9de041c31eb825 409 Gene3D G3DSA:1.10.630.10 20 409 6.2E-102 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_36675 c8b17d319c849a822f9de041c31eb825 409 PRINTS PR00385 P450 superfamily signature 358 369 4.9E-7 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_36675 c8b17d319c849a822f9de041c31eb825 409 PRINTS PR00385 P450 superfamily signature 282 293 4.9E-7 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_36675 c8b17d319c849a822f9de041c31eb825 409 PRINTS PR00385 P450 superfamily signature 349 358 4.9E-7 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_36675 c8b17d319c849a822f9de041c31eb825 409 PRINTS PR00385 P450 superfamily signature 244 261 4.9E-7 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_36675 c8b17d319c849a822f9de041c31eb825 409 Pfam PF00067 Cytochrome P450 177 378 2.5E-22 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_36675 c8b17d319c849a822f9de041c31eb825 409 SUPERFAMILY SSF48264 22 409 1.83E-81 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_36675 c8b17d319c849a822f9de041c31eb825 409 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 351 360 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RAM_00260 dcdedad30bf02d07ee291cac7a83df6d 448 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 136 148 - T 13-10-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 RAM_00260 dcdedad30bf02d07ee291cac7a83df6d 448 Pfam PF00069 Protein kinase domain 13 261 9.2E-43 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_00260 dcdedad30bf02d07ee291cac7a83df6d 448 Gene3D G3DSA:3.30.200.20 2 96 1.2E-32 T 13-10-2018 RAM_00260 dcdedad30bf02d07ee291cac7a83df6d 448 PIRSF PIRSF000654 18 262 2.6E-19 T 13-10-2018 RAM_00260 dcdedad30bf02d07ee291cac7a83df6d 448 SUPERFAMILY SSF56112 9 338 3.78E-73 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_00260 dcdedad30bf02d07ee291cac7a83df6d 448 SMART SM00220 12 271 1.6E-55 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_00260 dcdedad30bf02d07ee291cac7a83df6d 448 Gene3D G3DSA:1.10.510.10 98 276 7.5E-49 T 13-10-2018 RAM_23600 a3441a365ae4e0d28c7d1a4b503b7f91 345 TIGRFAM TIGR03559 F420_Rv3520c: probable F420-dependent oxidoreductase, Rv3520c family 2 321 8.9E-116 T 13-10-2018 IPR019951 F420-dependent oxidoreductase-predicted, Rv3520c RAM_23600 a3441a365ae4e0d28c7d1a4b503b7f91 345 Gene3D G3DSA:3.20.20.30 9 340 7.5E-87 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_23600 a3441a365ae4e0d28c7d1a4b503b7f91 345 SUPERFAMILY SSF51679 3 329 5.36E-73 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_23600 a3441a365ae4e0d28c7d1a4b503b7f91 345 Pfam PF00296 Luciferase-like monooxygenase 18 317 5.3E-84 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_45430 078b0609e29436e702ca90f43283f186 576 Gene3D G3DSA:1.10.510.10 88 272 6.8E-44 T 13-10-2018 RAM_45430 078b0609e29436e702ca90f43283f186 576 SUPERFAMILY SSF56112 4 319 9.85E-69 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_45430 078b0609e29436e702ca90f43283f186 576 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 125 137 - T 13-10-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 RAM_45430 078b0609e29436e702ca90f43283f186 576 Pfam PF00069 Protein kinase domain 7 215 1.8E-42 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_45430 078b0609e29436e702ca90f43283f186 576 SMART SM00220 7 264 4.6E-53 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_45430 078b0609e29436e702ca90f43283f186 576 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 13 36 - T 13-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 RAM_45430 078b0609e29436e702ca90f43283f186 576 Gene3D G3DSA:3.30.200.20 5 86 4.9E-28 T 13-10-2018 RAM_41420 cb8516c74f27417d61ab413553688415 318 SUPERFAMILY SSF51905 1 300 1.3E-38 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_41420 cb8516c74f27417d61ab413553688415 318 Hamap MF_01685 Ferredoxin--NADP reductase. 1 317 36.394 T 13-10-2018 IPR022890 Ferredoxin--NADP reductase, type 2 GO:0004324|GO:0055114 KEGG: 00195+1.18.1.2|MetaCyc: PWY-101 RAM_41420 cb8516c74f27417d61ab413553688415 318 Gene3D G3DSA:3.50.50.60 118 235 5.2E-86 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_41420 cb8516c74f27417d61ab413553688415 318 Gene3D G3DSA:3.50.50.60 1 296 5.2E-86 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_41420 cb8516c74f27417d61ab413553688415 318 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 254 276 8.6E-8 T 13-10-2018 RAM_41420 cb8516c74f27417d61ab413553688415 318 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 25 44 8.6E-8 T 13-10-2018 RAM_41420 cb8516c74f27417d61ab413553688415 318 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 144 162 8.6E-8 T 13-10-2018 RAM_41420 cb8516c74f27417d61ab413553688415 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 264 282 3.2E-8 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAM_41420 cb8516c74f27417d61ab413553688415 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 103 111 3.2E-8 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAM_41420 cb8516c74f27417d61ab413553688415 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 56 66 3.2E-8 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAM_41420 cb8516c74f27417d61ab413553688415 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 140 164 3.2E-8 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAM_41420 cb8516c74f27417d61ab413553688415 318 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 1 281 1.5E-28 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAM_17240 694a31f0003decb5e3963d67a79e7c3a 345 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 3 115 4.8E-15 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_17240 694a31f0003decb5e3963d67a79e7c3a 345 Gene3D G3DSA:1.10.540.10 2 117 3.9E-25 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_17240 694a31f0003decb5e3963d67a79e7c3a 345 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 222 337 5.3E-23 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_17240 694a31f0003decb5e3963d67a79e7c3a 345 SUPERFAMILY SSF56645 3 181 6.48E-26 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_17240 694a31f0003decb5e3963d67a79e7c3a 345 SUPERFAMILY SSF47203 218 343 1.8E-31 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_17240 694a31f0003decb5e3963d67a79e7c3a 345 Gene3D G3DSA:1.20.140.10 218 345 4.1E-32 T 13-10-2018 RAM_14680 d9b08ff20112aab84ab92b636b509775 649 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 277 284 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RAM_14680 d9b08ff20112aab84ab92b636b509775 649 SUPERFAMILY SSF52440 1 113 1.8E-43 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RAM_14680 d9b08ff20112aab84ab92b636b509775 649 SUPERFAMILY SSF51230 577 645 6.02E-22 T 13-10-2018 IPR011053 Single hybrid motif RAM_14680 d9b08ff20112aab84ab92b636b509775 649 Gene3D G3DSA:3.30.470.130 1 443 5.9E-182 T 13-10-2018 RAM_14680 d9b08ff20112aab84ab92b636b509775 649 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 602 619 - T 13-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RAM_14680 d9b08ff20112aab84ab92b636b509775 649 SUPERFAMILY SSF51246 321 440 8.89E-36 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 RAM_14680 d9b08ff20112aab84ab92b636b509775 649 Gene3D G3DSA:2.40.50.100 573 647 1.6E-23 T 13-10-2018 RAM_14680 d9b08ff20112aab84ab92b636b509775 649 Pfam PF02785 Biotin carboxylase C-terminal domain 325 438 6.5E-34 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RAM_14680 d9b08ff20112aab84ab92b636b509775 649 SUPERFAMILY SSF56059 83 332 7.78E-62 T 13-10-2018 RAM_14680 d9b08ff20112aab84ab92b636b509775 649 Pfam PF00364 Biotin-requiring enzyme 581 644 1.6E-18 T 13-10-2018 IPR000089 Biotin/lipoyl attachment RAM_14680 d9b08ff20112aab84ab92b636b509775 649 SMART SM00878 325 438 4.3E-50 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RAM_14680 d9b08ff20112aab84ab92b636b509775 649 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 1.0E-40 T 13-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RAM_14680 d9b08ff20112aab84ab92b636b509775 649 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 142 313 2.7E-65 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RAM_44750 930305035f75ff5388aecebba6a45c62 1055 PRINTS PR00364 Disease resistance protein signature 462 476 5.5E-6 T 13-10-2018 RAM_44750 930305035f75ff5388aecebba6a45c62 1055 PRINTS PR00364 Disease resistance protein signature 356 370 5.5E-6 T 13-10-2018 RAM_44750 930305035f75ff5388aecebba6a45c62 1055 PRINTS PR00364 Disease resistance protein signature 279 294 5.5E-6 T 13-10-2018 RAM_44750 930305035f75ff5388aecebba6a45c62 1055 SUPERFAMILY SSF48452 89 258 4.4E-32 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_44750 930305035f75ff5388aecebba6a45c62 1055 Pfam PF03704 Bacterial transcriptional activator domain 94 235 8.1E-38 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_44750 930305035f75ff5388aecebba6a45c62 1055 SUPERFAMILY SSF46894 2 77 3.68E-10 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_44750 930305035f75ff5388aecebba6a45c62 1055 Gene3D G3DSA:1.10.10.10 1 90 1.1E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_44750 930305035f75ff5388aecebba6a45c62 1055 Gene3D G3DSA:1.25.40.10 92 260 3.6E-47 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_44750 930305035f75ff5388aecebba6a45c62 1055 SUPERFAMILY SSF48452 781 919 2.42E-10 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_44750 930305035f75ff5388aecebba6a45c62 1055 Pfam PF13191 AAA ATPase domain 260 383 4.3E-8 T 13-10-2018 RAM_44750 930305035f75ff5388aecebba6a45c62 1055 Gene3D G3DSA:1.25.40.10 737 1052 3.2E-16 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_44750 930305035f75ff5388aecebba6a45c62 1055 SMART SM00862 16 87 1.8E-9 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_44750 930305035f75ff5388aecebba6a45c62 1055 Pfam PF00486 Transcriptional regulatory protein, C terminal 27 75 5.2E-6 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_44750 930305035f75ff5388aecebba6a45c62 1055 SMART SM01043 94 239 4.7E-43 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_44750 930305035f75ff5388aecebba6a45c62 1055 SUPERFAMILY SSF52540 250 518 1.15E-20 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_09815 39d37ca2d33870cc9c66534f46658b41 145 SUPERFAMILY SSF54593 7 145 5.91E-8 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_09815 39d37ca2d33870cc9c66534f46658b41 145 Gene3D G3DSA:3.10.180.10 3 145 6.6E-26 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_28810 2c18933a21737f4664a67e7c6d952f17 909 SUPERFAMILY SSF52540 8 232 2.25E-6 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_28810 2c18933a21737f4664a67e7c6d952f17 909 ProSitePatterns PS00622 LuxR-type HTH domain signature. 869 896 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_28810 2c18933a21737f4664a67e7c6d952f17 909 Gene3D G3DSA:1.10.10.10 816 909 2.4E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_28810 2c18933a21737f4664a67e7c6d952f17 909 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 869 885 2.8E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_28810 2c18933a21737f4664a67e7c6d952f17 909 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 855 869 2.8E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_28810 2c18933a21737f4664a67e7c6d952f17 909 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 885 897 2.8E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_28810 2c18933a21737f4664a67e7c6d952f17 909 SMART SM00421 852 909 2.9E-20 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_28810 2c18933a21737f4664a67e7c6d952f17 909 Pfam PF00196 Bacterial regulatory proteins, luxR family 855 905 2.3E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_28810 2c18933a21737f4664a67e7c6d952f17 909 SUPERFAMILY SSF46894 846 905 5.1E-15 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_28810 2c18933a21737f4664a67e7c6d952f17 909 Pfam PF13191 AAA ATPase domain 9 166 3.0E-21 T 13-10-2018 RAM_23520 8da1b00f31fcc40e7dbc33cfe4eeffaa 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 3.7E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_23520 8da1b00f31fcc40e7dbc33cfe4eeffaa 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 3.7E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_23520 8da1b00f31fcc40e7dbc33cfe4eeffaa 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 3.7E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_23520 8da1b00f31fcc40e7dbc33cfe4eeffaa 293 Gene3D G3DSA:1.10.10.10 1 85 2.9E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_23520 8da1b00f31fcc40e7dbc33cfe4eeffaa 293 SUPERFAMILY SSF46785 4 85 2.93E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_23520 8da1b00f31fcc40e7dbc33cfe4eeffaa 293 Gene3D G3DSA:3.40.190.10 104 279 6.5E-32 T 13-10-2018 RAM_23520 8da1b00f31fcc40e7dbc33cfe4eeffaa 293 Pfam PF03466 LysR substrate binding domain 105 284 1.6E-30 T 13-10-2018 IPR005119 LysR, substrate-binding RAM_23520 8da1b00f31fcc40e7dbc33cfe4eeffaa 293 SUPERFAMILY SSF53850 104 287 5.35E-30 T 13-10-2018 RAM_23520 8da1b00f31fcc40e7dbc33cfe4eeffaa 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 1.8E-19 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_23520 8da1b00f31fcc40e7dbc33cfe4eeffaa 293 Gene3D G3DSA:3.40.190.10 161 261 6.5E-32 T 13-10-2018 RAM_12975 aa6824787a990707b4da085b2ab90ecf 257 SMART SM00460 141 201 7.6E-13 T 13-10-2018 IPR002931 Transglutaminase-like RAM_12975 aa6824787a990707b4da085b2ab90ecf 257 Gene3D G3DSA:3.10.620.30 69 221 9.5E-58 T 13-10-2018 RAM_12975 aa6824787a990707b4da085b2ab90ecf 257 Pfam PF01841 Transglutaminase-like superfamily 108 199 1.0E-18 T 13-10-2018 IPR002931 Transglutaminase-like RAM_12975 aa6824787a990707b4da085b2ab90ecf 257 SUPERFAMILY SSF54001 72 228 5.75E-29 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily RAM_12975 aa6824787a990707b4da085b2ab90ecf 257 Gene3D G3DSA:2.60.40.2250 27 227 9.5E-58 T 13-10-2018 RAM_34680 71872255510cb9d73bc09be2702b7d87 132 SUPERFAMILY SSF54427 1 123 4.1E-24 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_34680 71872255510cb9d73bc09be2702b7d87 132 Gene3D G3DSA:3.10.450.50 1 129 3.9E-25 T 13-10-2018 RAM_34680 71872255510cb9d73bc09be2702b7d87 132 Pfam PF13577 SnoaL-like domain 1 115 1.3E-15 T 13-10-2018 IPR037401 SnoaL-like domain RAM_40945 c79d661d8a66ba67a50fbbbf781ea6c2 195 PIRSF PIRSF000709 2 166 8.6E-8 T 13-10-2018 RAM_40945 c79d661d8a66ba67a50fbbbf781ea6c2 195 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 5 189 1.4E-47 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 RAM_40945 c79d661d8a66ba67a50fbbbf781ea6c2 195 SUPERFAMILY SSF53254 4 190 7.46E-49 T 13-10-2018 IPR029033 Histidine phosphatase superfamily RAM_40945 c79d661d8a66ba67a50fbbbf781ea6c2 195 SMART SM00855 4 151 5.1E-22 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 RAM_40945 c79d661d8a66ba67a50fbbbf781ea6c2 195 Gene3D G3DSA:3.40.50.1240 1 193 1.5E-55 T 13-10-2018 IPR029033 Histidine phosphatase superfamily RAM_36650 416d281f2661861f7abc82e5e97cf2e0 137 Pfam PF13577 SnoaL-like domain 8 128 9.8E-15 T 13-10-2018 IPR037401 SnoaL-like domain RAM_36650 416d281f2661861f7abc82e5e97cf2e0 137 SUPERFAMILY SSF54427 5 133 6.82E-21 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_36650 416d281f2661861f7abc82e5e97cf2e0 137 Gene3D G3DSA:3.10.450.50 4 133 5.9E-23 T 13-10-2018 RAM_47990 da18b3ea4a424036ad89379daeca1d43 333 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 63 240 6.7E-62 T 13-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 RAM_47990 da18b3ea4a424036ad89379daeca1d43 333 Pfam PF02195 ParB-like nuclease domain 66 155 3.5E-24 T 13-10-2018 IPR003115 ParB/Sulfiredoxin RAM_47990 da18b3ea4a424036ad89379daeca1d43 333 Gene3D G3DSA:3.90.1530.30 78 140 6.4E-25 T 13-10-2018 RAM_47990 da18b3ea4a424036ad89379daeca1d43 333 SUPERFAMILY SSF110849 59 158 1.99E-28 T 13-10-2018 IPR036086 ParB/Sulfiredoxin superfamily RAM_47990 da18b3ea4a424036ad89379daeca1d43 333 Gene3D G3DSA:1.10.10.2830 142 255 5.5E-35 T 13-10-2018 RAM_47990 da18b3ea4a424036ad89379daeca1d43 333 SUPERFAMILY SSF109709 147 256 1.54E-31 T 13-10-2018 RAM_47990 da18b3ea4a424036ad89379daeca1d43 333 SMART SM00470 65 155 1.5E-31 T 13-10-2018 IPR003115 ParB/Sulfiredoxin RAM_18155 a26b097e1e95112fb7b6ebfe7b14ab85 436 Pfam PF12770 CHAT domain 195 340 6.1E-6 T 13-10-2018 IPR024983 CHAT domain RAM_08820 625bb114d845560d0fe67c06ed8edba4 448 Gene3D G3DSA:3.40.50.80 322 447 4.3E-23 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RAM_08820 625bb114d845560d0fe67c06ed8edba4 448 Pfam PF08022 FAD-binding domain 234 316 1.1E-5 T 13-10-2018 IPR013112 FAD-binding 8 GO:0016491|GO:0055114 RAM_08820 625bb114d845560d0fe67c06ed8edba4 448 Pfam PF00175 Oxidoreductase NAD-binding domain 329 425 4.4E-9 T 13-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 RAM_08820 625bb114d845560d0fe67c06ed8edba4 448 SUPERFAMILY SSF52343 308 442 8.64E-27 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RAM_08820 625bb114d845560d0fe67c06ed8edba4 448 Gene3D G3DSA:2.40.30.10 218 318 2.1E-11 T 13-10-2018 RAM_08820 625bb114d845560d0fe67c06ed8edba4 448 PRINTS PR00410 Phenol hydroxylase reductase family signature 328 347 7.6E-8 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RAM_08820 625bb114d845560d0fe67c06ed8edba4 448 PRINTS PR00410 Phenol hydroxylase reductase family signature 412 420 7.6E-8 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RAM_08820 625bb114d845560d0fe67c06ed8edba4 448 PRINTS PR00410 Phenol hydroxylase reductase family signature 312 321 7.6E-8 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RAM_08820 625bb114d845560d0fe67c06ed8edba4 448 Pfam PF01794 Ferric reductase like transmembrane component 55 176 1.8E-15 T 13-10-2018 IPR013130 Ferric reductase transmembrane component-like domain RAM_08820 625bb114d845560d0fe67c06ed8edba4 448 SUPERFAMILY SSF63380 218 317 5.73E-14 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RAM_10545 9f0f25e1679bde389a2a7d892c3d3189 582 Pfam PF03129 Anticodon binding domain 489 578 1.9E-17 T 13-10-2018 IPR004154 Anticodon-binding RAM_10545 9f0f25e1679bde389a2a7d892c3d3189 582 Pfam PF04073 Aminoacyl-tRNA editing domain 259 392 2.6E-21 T 13-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 RAM_10545 9f0f25e1679bde389a2a7d892c3d3189 582 Gene3D G3DSA:3.40.50.800 6 565 8.4E-211 T 13-10-2018 IPR036621 Anticodon-binding domain superfamily RAM_10545 9f0f25e1679bde389a2a7d892c3d3189 582 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 4 577 1.8E-169 T 13-10-2018 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RAM_10545 9f0f25e1679bde389a2a7d892c3d3189 582 SUPERFAMILY SSF52954 477 581 2.45E-27 T 13-10-2018 RAM_10545 9f0f25e1679bde389a2a7d892c3d3189 582 Gene3D G3DSA:3.30.930.10 13 478 8.4E-211 T 13-10-2018 RAM_10545 9f0f25e1679bde389a2a7d892c3d3189 582 SUPERFAMILY SSF55826 254 391 4.58E-11 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 RAM_10545 9f0f25e1679bde389a2a7d892c3d3189 582 PRINTS PR01046 Prolyl-tRNA synthetase signature 70 88 6.6E-15 T 13-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 RAM_10545 9f0f25e1679bde389a2a7d892c3d3189 582 PRINTS PR01046 Prolyl-tRNA synthetase signature 136 144 6.6E-15 T 13-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 RAM_10545 9f0f25e1679bde389a2a7d892c3d3189 582 PRINTS PR01046 Prolyl-tRNA synthetase signature 146 157 6.6E-15 T 13-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 RAM_10545 9f0f25e1679bde389a2a7d892c3d3189 582 PRINTS PR01046 Prolyl-tRNA synthetase signature 106 117 6.6E-15 T 13-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 RAM_10545 9f0f25e1679bde389a2a7d892c3d3189 582 Hamap MF_01569 Proline--tRNA ligase [proS]. 3 581 36.62 T 13-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RAM_10545 9f0f25e1679bde389a2a7d892c3d3189 582 SUPERFAMILY SSF55681 12 491 1.21E-84 T 13-10-2018 RAM_10545 9f0f25e1679bde389a2a7d892c3d3189 582 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 96 472 3.0E-35 T 13-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 RAM_10545 9f0f25e1679bde389a2a7d892c3d3189 582 Gene3D G3DSA:3.90.960.10 242 402 8.4E-211 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 RAM_32510 2cfe2a1ffb271cb6c75bdb179fbf4d1b 348 SUPERFAMILY SSF50249 109 179 4.78E-17 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_32510 2cfe2a1ffb271cb6c75bdb179fbf4d1b 348 SUPERFAMILY SSF54814 180 258 3.79E-27 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 RAM_32510 2cfe2a1ffb271cb6c75bdb179fbf4d1b 348 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 1 347 26.703 T 13-10-2018 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 RAM_32510 2cfe2a1ffb271cb6c75bdb179fbf4d1b 348 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 67 322 1.5E-100 T 13-10-2018 IPR010213 Transcription termination factor NusA GO:0003723 RAM_32510 2cfe2a1ffb271cb6c75bdb179fbf4d1b 348 Pfam PF13184 NusA-like KH domain 210 277 5.3E-25 T 13-10-2018 IPR025249 KH domain, NusA-like GO:0003723 RAM_32510 2cfe2a1ffb271cb6c75bdb179fbf4d1b 348 Gene3D G3DSA:2.40.50.140 105 178 1.4E-30 T 13-10-2018 RAM_32510 2cfe2a1ffb271cb6c75bdb179fbf4d1b 348 Gene3D G3DSA:3.30.300.20 258 327 7.2E-31 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta RAM_32510 2cfe2a1ffb271cb6c75bdb179fbf4d1b 348 Pfam PF08529 NusA N-terminal domain 67 100 1.2E-6 T 13-10-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 RAM_32510 2cfe2a1ffb271cb6c75bdb179fbf4d1b 348 Pfam PF08529 NusA N-terminal domain 6 60 3.8E-10 T 13-10-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 RAM_32510 2cfe2a1ffb271cb6c75bdb179fbf4d1b 348 SUPERFAMILY SSF54814 259 322 4.05E-17 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 RAM_32510 2cfe2a1ffb271cb6c75bdb179fbf4d1b 348 Gene3D G3DSA:3.30.300.20 179 257 2.6E-31 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta RAM_32510 2cfe2a1ffb271cb6c75bdb179fbf4d1b 348 SUPERFAMILY SSF69705 4 99 1.31E-28 T 13-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 RAM_32510 2cfe2a1ffb271cb6c75bdb179fbf4d1b 348 Gene3D G3DSA:3.30.1480.10 1 99 1.6E-34 T 13-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 RAM_32510 2cfe2a1ffb271cb6c75bdb179fbf4d1b 348 SMART SM00316 110 180 4.8E-5 T 13-10-2018 IPR022967 RNA-binding domain, S1 RAM_07930 9434ff6b009196abfc645496c805eb91 425 Gene3D G3DSA:3.30.300.30 321 424 2.8E-28 T 13-10-2018 RAM_07930 9434ff6b009196abfc645496c805eb91 425 Pfam PF00501 AMP-binding enzyme 74 282 6.9E-13 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_07930 9434ff6b009196abfc645496c805eb91 425 Pfam PF14535 AMP-binding enzyme C-terminal domain 329 422 9.9E-24 T 13-10-2018 IPR028154 AMP-dependent ligase, C-terminal RAM_07930 9434ff6b009196abfc645496c805eb91 425 SUPERFAMILY SSF56801 13 379 4.19E-58 T 13-10-2018 RAM_07930 9434ff6b009196abfc645496c805eb91 425 Gene3D G3DSA:3.40.50.12780 4 320 7.7E-133 T 13-10-2018 RAM_07930 9434ff6b009196abfc645496c805eb91 425 PIRSF PIRSF006444 2 424 4.9E-200 T 13-10-2018 IPR011880 Phenylacetate-CoA ligase GO:0010124|GO:0047475 KEGG: 00360+6.2.1.30|MetaCyc: PWY-1341|MetaCyc: PWY-6318|MetaCyc: PWY-7716 RAM_07930 9434ff6b009196abfc645496c805eb91 425 TIGRFAM TIGR02155 PA_CoA_ligase: phenylacetate-CoA ligase 7 422 2.5E-208 T 13-10-2018 IPR011880 Phenylacetate-CoA ligase GO:0010124|GO:0047475 KEGG: 00360+6.2.1.30|MetaCyc: PWY-1341|MetaCyc: PWY-6318|MetaCyc: PWY-7716 RAM_46035 61726ee90c927c092b3a28784bb9c30b 234 Gene3D G3DSA:1.10.10.10 2 77 3.5E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_46035 61726ee90c927c092b3a28784bb9c30b 234 SMART SM00345 20 78 7.5E-12 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_46035 61726ee90c927c092b3a28784bb9c30b 234 Gene3D G3DSA:1.20.120.530 78 216 1.1E-27 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_46035 61726ee90c927c092b3a28784bb9c30b 234 SMART SM00895 88 210 5.0E-17 T 13-10-2018 IPR011711 GntR, C-terminal RAM_46035 61726ee90c927c092b3a28784bb9c30b 234 Pfam PF00392 Bacterial regulatory proteins, gntR family 18 78 2.8E-15 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_46035 61726ee90c927c092b3a28784bb9c30b 234 Pfam PF07729 FCD domain 89 209 5.4E-24 T 13-10-2018 IPR011711 GntR, C-terminal RAM_46035 61726ee90c927c092b3a28784bb9c30b 234 SUPERFAMILY SSF46785 11 106 1.73E-15 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_46035 61726ee90c927c092b3a28784bb9c30b 234 SUPERFAMILY SSF48008 86 215 2.04E-25 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_27685 abadacea2b0241fb506b203ddb7c0385 149 Pfam PF08592 Domain of unknown function (DUF1772) 21 141 3.5E-11 T 13-10-2018 RAM_03195 5ec7abdc68a748a2fd08177e92893047 441 SUPERFAMILY SSF51569 13 441 8.42E-162 T 13-10-2018 RAM_03195 5ec7abdc68a748a2fd08177e92893047 441 Pfam PF01474 Class-II DAHP synthetase family 27 189 2.7E-53 T 13-10-2018 IPR002480 DAHP synthetase, class II GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 RAM_03195 5ec7abdc68a748a2fd08177e92893047 441 Pfam PF01474 Class-II DAHP synthetase family 222 437 2.3E-95 T 13-10-2018 IPR002480 DAHP synthetase, class II GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 RAM_03195 5ec7abdc68a748a2fd08177e92893047 441 Gene3D G3DSA:3.20.20.70 53 441 2.2E-151 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_14200 ee1e751970f340507f80dc39d5e2a399 160 Gene3D G3DSA:3.10.450.50 23 154 1.8E-26 T 13-10-2018 RAM_14200 ee1e751970f340507f80dc39d5e2a399 160 Pfam PF13474 SnoaL-like domain 30 145 1.3E-10 T 13-10-2018 IPR037401 SnoaL-like domain RAM_14200 ee1e751970f340507f80dc39d5e2a399 160 SUPERFAMILY SSF54427 28 144 5.18E-20 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_24285 1112a7c8ac75c76a6ec4faed321709b6 324 Pfam PF08544 GHMP kinases C terminal 215 289 9.7E-5 T 13-10-2018 IPR013750 GHMP kinase, C-terminal domain RAM_24285 1112a7c8ac75c76a6ec4faed321709b6 324 SUPERFAMILY SSF54211 26 176 4.86E-17 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RAM_24285 1112a7c8ac75c76a6ec4faed321709b6 324 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 103 114 - T 13-10-2018 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 RAM_24285 1112a7c8ac75c76a6ec4faed321709b6 324 Pfam PF00288 GHMP kinases N terminal domain 97 130 6.8E-8 T 13-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 RAM_24285 1112a7c8ac75c76a6ec4faed321709b6 324 PIRSF PIRSF033887 8 304 6.2E-89 T 13-10-2018 IPR012363 Propanediol utilisation/coumermycin biosynthesis, PduX-related KEGG: 00860+2.7.1.177|MetaCyc: PWY-5443 RAM_24285 1112a7c8ac75c76a6ec4faed321709b6 324 Gene3D G3DSA:3.30.230.10 41 165 5.5E-12 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RAM_26380 7bca9c75fb3411f42d23e35cc3851aeb 447 ProSitePatterns PS00217 Sugar transport proteins signature 2. 97 122 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RAM_26380 7bca9c75fb3411f42d23e35cc3851aeb 447 TIGRFAM TIGR00879 SP: MFS transporter, sugar porter (SP) family 3 433 2.1E-105 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 RAM_26380 7bca9c75fb3411f42d23e35cc3851aeb 447 Pfam PF00083 Sugar (and other) transporter 3 435 2.9E-104 T 13-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 RAM_26380 7bca9c75fb3411f42d23e35cc3851aeb 447 PRINTS PR00171 Sugar transporter signature 247 257 1.0E-25 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 RAM_26380 7bca9c75fb3411f42d23e35cc3851aeb 447 PRINTS PR00171 Sugar transporter signature 9 19 1.0E-25 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 RAM_26380 7bca9c75fb3411f42d23e35cc3851aeb 447 PRINTS PR00171 Sugar transporter signature 92 111 1.0E-25 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 RAM_26380 7bca9c75fb3411f42d23e35cc3851aeb 447 PRINTS PR00171 Sugar transporter signature 336 357 1.0E-25 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 RAM_26380 7bca9c75fb3411f42d23e35cc3851aeb 447 PRINTS PR00171 Sugar transporter signature 359 371 1.0E-25 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 RAM_26380 7bca9c75fb3411f42d23e35cc3851aeb 447 ProSitePatterns PS00216 Sugar transport proteins signature 1. 291 307 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RAM_26380 7bca9c75fb3411f42d23e35cc3851aeb 447 SUPERFAMILY SSF103473 3 434 3.27E-72 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_26380 7bca9c75fb3411f42d23e35cc3851aeb 447 Gene3D G3DSA:1.20.1250.20 1 435 4.5E-124 T 13-10-2018 RAM_35065 a3bac1dd7da38673ffd470098dac3875 393 Pfam PF07690 Major Facilitator Superfamily 8 229 7.7E-13 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_35065 a3bac1dd7da38673ffd470098dac3875 393 Gene3D G3DSA:1.20.1250.20 4 183 3.5E-15 T 13-10-2018 RAM_35065 a3bac1dd7da38673ffd470098dac3875 393 Gene3D G3DSA:1.20.1250.20 195 381 4.2E-21 T 13-10-2018 RAM_35065 a3bac1dd7da38673ffd470098dac3875 393 SUPERFAMILY SSF103473 6 384 7.06E-42 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_19570 21c32ae75144aa8d4ee39b8f78d1386f 382 Gene3D G3DSA:2.40.110.10 121 228 2.4E-27 T 13-10-2018 RAM_19570 21c32ae75144aa8d4ee39b8f78d1386f 382 Gene3D G3DSA:1.10.540.10 2 118 2.0E-26 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_19570 21c32ae75144aa8d4ee39b8f78d1386f 382 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 5 116 1.1E-20 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_19570 21c32ae75144aa8d4ee39b8f78d1386f 382 SUPERFAMILY SSF47203 224 376 2.09E-40 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_19570 21c32ae75144aa8d4ee39b8f78d1386f 382 Gene3D G3DSA:1.20.140.10 229 377 3.6E-38 T 13-10-2018 RAM_19570 21c32ae75144aa8d4ee39b8f78d1386f 382 SUPERFAMILY SSF56645 4 224 7.2E-57 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_19570 21c32ae75144aa8d4ee39b8f78d1386f 382 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 225 371 1.2E-35 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_19570 21c32ae75144aa8d4ee39b8f78d1386f 382 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 121 211 1.4E-16 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RAM_12890 19cabb4bda03cb9e3d8f52cdb9d56ed5 479 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 303 2.1E-39 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAM_12890 19cabb4bda03cb9e3d8f52cdb9d56ed5 479 SUPERFAMILY SSF55424 318 388 6.87E-8 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RAM_12890 19cabb4bda03cb9e3d8f52cdb9d56ed5 479 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 257 279 2.0E-15 T 13-10-2018 RAM_12890 19cabb4bda03cb9e3d8f52cdb9d56ed5 479 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 2.0E-15 T 13-10-2018 RAM_12890 19cabb4bda03cb9e3d8f52cdb9d56ed5 479 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 231 247 2.0E-15 T 13-10-2018 RAM_12890 19cabb4bda03cb9e3d8f52cdb9d56ed5 479 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 2.0E-15 T 13-10-2018 RAM_12890 19cabb4bda03cb9e3d8f52cdb9d56ed5 479 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 101 119 2.0E-15 T 13-10-2018 RAM_12890 19cabb4bda03cb9e3d8f52cdb9d56ed5 479 SUPERFAMILY SSF51905 145 311 2.97E-21 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_12890 19cabb4bda03cb9e3d8f52cdb9d56ed5 479 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 7.3E-13 T 13-10-2018 RAM_12890 19cabb4bda03cb9e3d8f52cdb9d56ed5 479 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 272 279 7.3E-13 T 13-10-2018 RAM_12890 19cabb4bda03cb9e3d8f52cdb9d56ed5 479 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 147 172 7.3E-13 T 13-10-2018 RAM_12890 19cabb4bda03cb9e3d8f52cdb9d56ed5 479 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 232 246 7.3E-13 T 13-10-2018 RAM_12890 19cabb4bda03cb9e3d8f52cdb9d56ed5 479 Gene3D G3DSA:3.50.50.60 114 238 7.4E-82 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_12890 19cabb4bda03cb9e3d8f52cdb9d56ed5 479 SUPERFAMILY SSF51905 6 190 4.15E-38 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_12890 19cabb4bda03cb9e3d8f52cdb9d56ed5 479 Gene3D G3DSA:3.50.50.60 7 311 7.4E-82 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_08570 6edb26afa5680bf0efa50a1c3626701d 337 PIRSF PIRSF000116 203 334 1.8E-12 T 13-10-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 RAM_08570 6edb26afa5680bf0efa50a1c3626701d 337 PIRSF PIRSF000116 3 211 2.4E-39 T 13-10-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 RAM_08570 6edb26afa5680bf0efa50a1c3626701d 337 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 16 328 1.1E-129 T 13-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 RAM_08570 6edb26afa5680bf0efa50a1c3626701d 337 Hamap MF_00435 Ketol-acid reductoisomerase (NADP(+)) [ilvC]. 3 330 44.818 T 13-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 RAM_08570 6edb26afa5680bf0efa50a1c3626701d 337 Gene3D G3DSA:3.40.50.720 1 183 1.2E-75 T 13-10-2018 RAM_08570 6edb26afa5680bf0efa50a1c3626701d 337 Gene3D G3DSA:1.10.3730.40 184 337 2.0E-70 T 13-10-2018 RAM_08570 6edb26afa5680bf0efa50a1c3626701d 337 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 185 328 1.3E-63 T 13-10-2018 IPR000506 Ketol-acid reductoisomerase, C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 RAM_08570 6edb26afa5680bf0efa50a1c3626701d 337 SUPERFAMILY SSF48179 185 330 1.34E-66 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RAM_08570 6edb26afa5680bf0efa50a1c3626701d 337 SUPERFAMILY SSF51735 4 184 9.88E-71 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_08570 6edb26afa5680bf0efa50a1c3626701d 337 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 16 179 1.5E-73 T 13-10-2018 IPR013116 Ketol-acid reductoisomerase, N-terminal KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 RAM_36295 433a3089701fa8d996b540d9b4be03b0 410 SUPERFAMILY SSF53720 7 398 3.67E-60 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RAM_36295 433a3089701fa8d996b540d9b4be03b0 410 Gene3D G3DSA:3.40.309.10 232 371 2.4E-102 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RAM_36295 433a3089701fa8d996b540d9b4be03b0 410 Pfam PF00171 Aldehyde dehydrogenase family 5 288 4.2E-12 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RAM_36295 433a3089701fa8d996b540d9b4be03b0 410 Gene3D G3DSA:3.40.605.10 15 400 2.4E-102 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RAM_36295 433a3089701fa8d996b540d9b4be03b0 410 PIRSF PIRSF000151 1 409 1.1E-74 T 13-10-2018 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922 RAM_16375 23d724cd955fa1c9c9e79dda01e2dd2b 248 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 158 169 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RAM_16375 23d724cd955fa1c9c9e79dda01e2dd2b 248 SUPERFAMILY SSF54292 2 115 4.45E-21 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RAM_16375 23d724cd955fa1c9c9e79dda01e2dd2b 248 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 4 119 2.2E-24 T 13-10-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_16375 23d724cd955fa1c9c9e79dda01e2dd2b 248 Gene3D G3DSA:3.10.20.30 1 115 4.0E-25 T 13-10-2018 IPR012675 Beta-grasp domain superfamily RAM_16375 23d724cd955fa1c9c9e79dda01e2dd2b 248 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 58 66 - T 13-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RAM_16375 23d724cd955fa1c9c9e79dda01e2dd2b 248 SUPERFAMILY SSF46548 118 241 6.63E-24 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 RAM_16375 23d724cd955fa1c9c9e79dda01e2dd2b 248 Pfam PF13183 4Fe-4S dicluster domain 157 227 3.7E-10 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RAM_16375 23d724cd955fa1c9c9e79dda01e2dd2b 248 Gene3D G3DSA:1.10.1060.10 135 244 2.2E-11 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 RAM_04360 0de1d89ea78b15fcea0444a3be8cb840 618 SUPERFAMILY SSF51445 281 479 1.33E-15 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_04360 0de1d89ea78b15fcea0444a3be8cb840 618 Pfam PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation 517 607 4.0E-22 T 13-10-2018 IPR029483 Glycosyl-hydrolase 97, C-terminal oligomerisation domain RAM_04360 0de1d89ea78b15fcea0444a3be8cb840 618 Gene3D G3DSA:2.70.98.10 42 273 2.2E-29 T 13-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 RAM_04360 0de1d89ea78b15fcea0444a3be8cb840 618 Pfam PF10566 Glycoside hydrolase 97 281 515 6.2E-59 T 13-10-2018 IPR019563 Glycosyl-hydrolase 97, catalytic domain RAM_04360 0de1d89ea78b15fcea0444a3be8cb840 618 Gene3D G3DSA:3.20.20.70 274 613 3.3E-102 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_04360 0de1d89ea78b15fcea0444a3be8cb840 618 Pfam PF14508 Glycosyl-hydrolase 97 N-terminal 52 276 8.9E-41 T 13-10-2018 IPR029486 Glycosyl-hydrolase 97, N-terminal domain RAM_34640 c3f2534ed512b67bb11d8c2cbdcab8f3 405 SMART SM00530 9 64 2.2E-9 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_34640 c3f2534ed512b67bb11d8c2cbdcab8f3 405 Gene3D G3DSA:1.10.260.40 2 69 1.1E-9 T 13-10-2018 RAM_34640 c3f2534ed512b67bb11d8c2cbdcab8f3 405 SUPERFAMILY SSF48239 108 309 6.87E-10 T 13-10-2018 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid RAM_34640 c3f2534ed512b67bb11d8c2cbdcab8f3 405 Gene3D G3DSA:1.50.10.20 246 371 4.1E-6 T 13-10-2018 RAM_34640 c3f2534ed512b67bb11d8c2cbdcab8f3 405 Pfam PF13560 Helix-turn-helix domain 6 62 1.8E-10 T 13-10-2018 RAM_34640 c3f2534ed512b67bb11d8c2cbdcab8f3 405 SUPERFAMILY SSF47413 4 59 3.22E-10 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_35820 96b7b635d6d3c344e07c54af4eff8a1b 562 Pfam PF00476 DNA polymerase family A 203 546 2.4E-21 T 13-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAM_35820 96b7b635d6d3c344e07c54af4eff8a1b 562 Gene3D G3DSA:1.10.150.20 333 483 2.9E-22 T 13-10-2018 RAM_35820 96b7b635d6d3c344e07c54af4eff8a1b 562 SUPERFAMILY SSF56672 154 561 1.01E-56 T 13-10-2018 RAM_35820 96b7b635d6d3c344e07c54af4eff8a1b 562 SMART SM00482 310 520 2.2E-6 T 13-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAM_35820 96b7b635d6d3c344e07c54af4eff8a1b 562 Gene3D G3DSA:3.30.70.370 295 538 2.9E-22 T 13-10-2018 RAM_24775 cd4cb112fbf1632ebe03eb281c2e5786 209 Pfam PF02525 Flavodoxin-like fold 4 193 3.7E-35 T 13-10-2018 IPR003680 Flavodoxin-like fold RAM_24775 cd4cb112fbf1632ebe03eb281c2e5786 209 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 2 209 21.35 T 13-10-2018 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 RAM_24775 cd4cb112fbf1632ebe03eb281c2e5786 209 Gene3D G3DSA:3.40.50.360 1 207 2.0E-40 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RAM_24775 cd4cb112fbf1632ebe03eb281c2e5786 209 SUPERFAMILY SSF52218 1 208 6.92E-37 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RAM_47680 5dceba2dc6cc32f8720ee2a60c98adea 82 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 3 80 20.29 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_47680 5dceba2dc6cc32f8720ee2a60c98adea 82 SUPERFAMILY SSF46911 6 79 5.89E-25 T 13-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_47680 5dceba2dc6cc32f8720ee2a60c98adea 82 Gene3D G3DSA:4.10.640.10 2 82 9.5E-28 T 13-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_47680 5dceba2dc6cc32f8720ee2a60c98adea 82 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 28 79 1.0E-21 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_47680 5dceba2dc6cc32f8720ee2a60c98adea 82 PRINTS PR00974 Ribosomal protein S18 family signature 35 45 5.2E-16 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_47680 5dceba2dc6cc32f8720ee2a60c98adea 82 PRINTS PR00974 Ribosomal protein S18 family signature 67 77 5.2E-16 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_47680 5dceba2dc6cc32f8720ee2a60c98adea 82 PRINTS PR00974 Ribosomal protein S18 family signature 53 67 5.2E-16 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_47680 5dceba2dc6cc32f8720ee2a60c98adea 82 PRINTS PR00974 Ribosomal protein S18 family signature 45 52 5.2E-16 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_47680 5dceba2dc6cc32f8720ee2a60c98adea 82 ProSitePatterns PS00057 Ribosomal protein S18 signature. 28 51 - T 13-10-2018 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_47680 5dceba2dc6cc32f8720ee2a60c98adea 82 Pfam PF01084 Ribosomal protein S18 27 75 1.1E-22 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_47680 5dceba2dc6cc32f8720ee2a60c98adea 82 TIGRFAM TIGR00165 S18: ribosomal protein bS18 9 79 5.3E-27 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_36930 98b30d7f060d0d2223f6bbc1f670bb04 381 Gene3D G3DSA:3.40.47.10 6 263 2.0E-138 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_36930 98b30d7f060d0d2223f6bbc1f670bb04 381 Pfam PF00108 Thiolase, N-terminal domain 5 249 2.6E-71 T 13-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 RAM_36930 98b30d7f060d0d2223f6bbc1f670bb04 381 Pfam PF02803 Thiolase, C-terminal domain 258 378 3.0E-38 T 13-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 RAM_36930 98b30d7f060d0d2223f6bbc1f670bb04 381 SUPERFAMILY SSF53901 3 257 4.51E-77 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_36930 98b30d7f060d0d2223f6bbc1f670bb04 381 Gene3D G3DSA:3.40.47.10 127 377 2.0E-138 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_36930 98b30d7f060d0d2223f6bbc1f670bb04 381 PIRSF PIRSF000429 1 381 7.0E-121 T 13-10-2018 IPR002155 Thiolase GO:0016747 RAM_36930 98b30d7f060d0d2223f6bbc1f670bb04 381 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 378 5.4E-134 T 13-10-2018 IPR002155 Thiolase GO:0016747 RAM_36930 98b30d7f060d0d2223f6bbc1f670bb04 381 ProSitePatterns PS00737 Thiolases signature 2. 326 342 - T 13-10-2018 IPR020613 Thiolase, conserved site GO:0016747 RAM_36930 98b30d7f060d0d2223f6bbc1f670bb04 381 SUPERFAMILY SSF53901 258 379 2.21E-38 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_24870 e62555090b16c67901e5e880160d9998 143 Pfam PF01638 HxlR-like helix-turn-helix 33 120 4.9E-29 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type RAM_24870 e62555090b16c67901e5e880160d9998 143 Gene3D G3DSA:1.10.10.10 3 132 1.1E-43 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_24870 e62555090b16c67901e5e880160d9998 143 SUPERFAMILY SSF46785 18 131 1.08E-32 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_25285 9dda8c1b95a4591d20bb21af7a414736 315 PRINTS PR00111 Alpha/beta hydrolase fold signature 58 73 1.3E-7 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_25285 9dda8c1b95a4591d20bb21af7a414736 315 PRINTS PR00111 Alpha/beta hydrolase fold signature 109 122 1.3E-7 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_25285 9dda8c1b95a4591d20bb21af7a414736 315 PRINTS PR00111 Alpha/beta hydrolase fold signature 123 136 1.3E-7 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_25285 9dda8c1b95a4591d20bb21af7a414736 315 Gene3D G3DSA:3.40.50.1820 1 314 5.9E-82 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_25285 9dda8c1b95a4591d20bb21af7a414736 315 SUPERFAMILY SSF53474 2 297 1.8E-50 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_25285 9dda8c1b95a4591d20bb21af7a414736 315 PIRSF PIRSF006431 1 314 2.2E-110 T 13-10-2018 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 RAM_25285 9dda8c1b95a4591d20bb21af7a414736 315 Pfam PF00561 alpha/beta hydrolase fold 36 183 8.7E-25 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_25285 9dda8c1b95a4591d20bb21af7a414736 315 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 61 72 2.9E-12 T 13-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 RAM_25285 9dda8c1b95a4591d20bb21af7a414736 315 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 109 123 2.9E-12 T 13-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 RAM_25285 9dda8c1b95a4591d20bb21af7a414736 315 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 35 43 2.9E-12 T 13-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 RAM_25285 9dda8c1b95a4591d20bb21af7a414736 315 TIGRFAM TIGR01249 pro_imino_pep_1: prolyl aminopeptidase 7 311 1.3E-92 T 13-10-2018 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 RAM_13745 f05f66b9c4eaa6c5002ced76438bc7a8 393 SUPERFAMILY SSF56112 42 305 3.06E-12 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_34140 2f5c1b00f5aaa2e19cc79af17360c698 410 SUPERFAMILY SSF102114 18 408 6.15E-104 T 13-10-2018 RAM_34140 2f5c1b00f5aaa2e19cc79af17360c698 410 Pfam PF04055 Radical SAM superfamily 38 213 1.9E-18 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RAM_34140 2f5c1b00f5aaa2e19cc79af17360c698 410 Gene3D G3DSA:3.80.30.20 14 335 1.3E-88 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe RAM_34140 2f5c1b00f5aaa2e19cc79af17360c698 410 SMART SM00729 33 258 1.3E-52 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 RAM_34140 2f5c1b00f5aaa2e19cc79af17360c698 410 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 36 364 5.6E-70 T 13-10-2018 IPR004559 Oxygen-independent coproporphyrinogen III oxidase-like GO:0004109|GO:0005737|GO:0006779|GO:0055114 RAM_12980 4896878757b4bf228eb95a535f9ae4e0 340 Pfam PF03631 Virulence factor BrkB 40 287 2.9E-38 T 13-10-2018 IPR017039 Virulence factor BrkB RAM_07590 28d60802d875d6b5aaebc5567ded98b7 182 Gene3D G3DSA:1.10.357.10 3 179 1.1E-13 T 13-10-2018 RAM_07590 28d60802d875d6b5aaebc5567ded98b7 182 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 46 1.2E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_07590 28d60802d875d6b5aaebc5567ded98b7 182 SUPERFAMILY SSF46689 4 68 4.46E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_16885 018b4c2472fdb9ac7db5afc7f8abdc8e 124 Gene3D G3DSA:3.10.180.10 3 124 4.4E-22 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_16885 018b4c2472fdb9ac7db5afc7f8abdc8e 124 SUPERFAMILY SSF54593 8 123 3.49E-23 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_16885 018b4c2472fdb9ac7db5afc7f8abdc8e 124 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 8 119 4.8E-9 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RAM_22490 84cc7c6fe9fa0aab779d4b9e3528c0fa 292 Pfam PF01636 Phosphotransferase enzyme family 37 257 1.3E-31 T 13-10-2018 IPR002575 Aminoglycoside phosphotransferase RAM_22490 84cc7c6fe9fa0aab779d4b9e3528c0fa 292 Gene3D G3DSA:3.90.1200.10 107 254 8.6E-16 T 13-10-2018 RAM_22490 84cc7c6fe9fa0aab779d4b9e3528c0fa 292 SUPERFAMILY SSF56112 19 258 2.27E-39 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_22490 84cc7c6fe9fa0aab779d4b9e3528c0fa 292 Gene3D G3DSA:3.30.200.20 14 103 6.1E-7 T 13-10-2018 RAM_13920 478048bebc134947e5cb6f2e7382238a 493 Gene3D G3DSA:2.115.10.20 46 158 4.0E-11 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily RAM_13920 478048bebc134947e5cb6f2e7382238a 493 Gene3D G3DSA:2.115.10.20 159 241 4.3E-9 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily RAM_13920 478048bebc134947e5cb6f2e7382238a 493 SUPERFAMILY SSF75005 129 237 1.57E-18 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily RAM_10340 dd5048b28d633411a2107d8c60e03e53 408 SUPERFAMILY SSF50156 166 222 3.02E-11 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 RAM_10340 dd5048b28d633411a2107d8c60e03e53 408 Gene3D G3DSA:2.30.42.10 163 249 4.8E-14 T 13-10-2018 RAM_10340 dd5048b28d633411a2107d8c60e03e53 408 SMART SM00228 109 212 0.0063 T 13-10-2018 IPR001478 PDZ domain GO:0005515 RAM_10340 dd5048b28d633411a2107d8c60e03e53 408 Pfam PF02163 Peptidase family M50 11 358 7.7E-48 T 13-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 RAM_17330 3549964b915eee89aadd3ffa8545cb5c 435 Pfam PF13416 Bacterial extracellular solute-binding protein 63 372 1.6E-35 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein RAM_17330 3549964b915eee89aadd3ffa8545cb5c 435 Gene3D G3DSA:3.40.190.10 42 433 4.8E-73 T 13-10-2018 RAM_17330 3549964b915eee89aadd3ffa8545cb5c 435 SUPERFAMILY SSF53850 46 425 5.22E-68 T 13-10-2018 RAM_18805 261c7c7676380e5df6c939389000949d 221 SMART SM00421 156 213 2.4E-23 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_18805 261c7c7676380e5df6c939389000949d 221 Pfam PF00196 Bacterial regulatory proteins, luxR family 158 213 6.8E-19 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_18805 261c7c7676380e5df6c939389000949d 221 SUPERFAMILY SSF46894 147 219 3.06E-21 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_18805 261c7c7676380e5df6c939389000949d 221 SUPERFAMILY SSF52172 8 137 1.99E-35 T 13-10-2018 IPR011006 CheY-like superfamily RAM_18805 261c7c7676380e5df6c939389000949d 221 Gene3D G3DSA:3.40.50.12740 9 219 2.4E-69 T 13-10-2018 RAM_18805 261c7c7676380e5df6c939389000949d 221 SMART SM00448 9 122 3.5E-31 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_18805 261c7c7676380e5df6c939389000949d 221 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 159 173 7.6E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_18805 261c7c7676380e5df6c939389000949d 221 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 189 201 7.6E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_18805 261c7c7676380e5df6c939389000949d 221 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 173 189 7.6E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_18805 261c7c7676380e5df6c939389000949d 221 ProSitePatterns PS00622 LuxR-type HTH domain signature. 173 200 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_18805 261c7c7676380e5df6c939389000949d 221 Pfam PF00072 Response regulator receiver domain 11 123 9.2E-30 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_33190 f5d65dea29e879d8c6e60d728670433c 290 Gene3D G3DSA:1.10.357.10 55 262 5.6E-45 T 13-10-2018 RAM_33190 f5d65dea29e879d8c6e60d728670433c 290 Pfam PF00440 Bacterial regulatory proteins, tetR family 73 118 5.6E-13 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_33190 f5d65dea29e879d8c6e60d728670433c 290 SUPERFAMILY SSF48498 137 255 1.21E-11 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_33190 f5d65dea29e879d8c6e60d728670433c 290 SUPERFAMILY SSF46689 59 139 1.54E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_33190 f5d65dea29e879d8c6e60d728670433c 290 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 73 86 6.0E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_33190 f5d65dea29e879d8c6e60d728670433c 290 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 93 116 6.0E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_41125 b0b38e51bed176595c2ecca3c7fdc9bf 147 Pfam PF01850 PIN domain 6 140 2.7E-9 T 13-10-2018 IPR002716 PIN domain RAM_41125 b0b38e51bed176595c2ecca3c7fdc9bf 147 Gene3D G3DSA:3.40.50.1010 4 141 3.0E-10 T 13-10-2018 RAM_41125 b0b38e51bed176595c2ecca3c7fdc9bf 147 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 5 146 10.865 T 13-10-2018 IPR022907 VapC family GO:0004540 RAM_41125 b0b38e51bed176595c2ecca3c7fdc9bf 147 SUPERFAMILY SSF88723 5 146 2.64E-11 T 13-10-2018 IPR029060 PIN-like domain superfamily RAM_13810 0109074938475dafe5745013c0e1cd62 275 TIGRFAM TIGR01809 Shik-DH-AROM: shikimate-5-dehydrogenase 1 262 6.8E-67 T 13-10-2018 IPR010110 Shikimate dehydrogenase, AroM-type GO:0004764|GO:0005737|GO:0055114 KEGG: 00400+1.1.1.25+4.2.1.10+2.7.1.71+2.5.1.19+4.2.3.4|MetaCyc: PWY-6163|MetaCyc: PWY-6164|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RAM_13810 0109074938475dafe5745013c0e1cd62 275 Gene3D G3DSA:3.40.50.720 96 240 2.2E-77 T 13-10-2018 RAM_13810 0109074938475dafe5745013c0e1cd62 275 Gene3D G3DSA:3.40.50.10860 1 255 2.2E-77 T 13-10-2018 RAM_13810 0109074938475dafe5745013c0e1cd62 275 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 1 83 2.8E-22 T 13-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 RAM_13810 0109074938475dafe5745013c0e1cd62 275 SUPERFAMILY SSF53223 1 95 1.9E-23 T 13-10-2018 RAM_13810 0109074938475dafe5745013c0e1cd62 275 SUPERFAMILY SSF51735 96 265 7.4E-26 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_31485 e3006ed2385304ba6ad9b7d9345550b0 322 Pfam PF02653 Branched-chain amino acid transport system / permease component 14 305 7.0E-40 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 RAM_06220 48412f9e091c8a7fb3621cf1b64db760 280 Pfam PF01384 Phosphate transporter family 11 220 2.1E-47 T 13-10-2018 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 RAM_19805 bd525e26c8ff2285f60bd066e0940304 901 SUPERFAMILY SSF48452 692 877 4.93E-24 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_19805 bd525e26c8ff2285f60bd066e0940304 901 Gene3D G3DSA:3.40.50.300 115 274 2.7E-30 T 13-10-2018 RAM_19805 bd525e26c8ff2285f60bd066e0940304 901 Gene3D G3DSA:1.25.40.10 525 690 1.4E-17 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_19805 bd525e26c8ff2285f60bd066e0940304 901 SUPERFAMILY SSF47413 46 98 9.07E-6 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_19805 bd525e26c8ff2285f60bd066e0940304 901 PRINTS PR00364 Disease resistance protein signature 150 165 1.5E-6 T 13-10-2018 RAM_19805 bd525e26c8ff2285f60bd066e0940304 901 PRINTS PR00364 Disease resistance protein signature 228 242 1.5E-6 T 13-10-2018 RAM_19805 bd525e26c8ff2285f60bd066e0940304 901 PRINTS PR00364 Disease resistance protein signature 316 330 1.5E-6 T 13-10-2018 RAM_19805 bd525e26c8ff2285f60bd066e0940304 901 SUPERFAMILY SSF52540 119 386 1.01E-30 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_19805 bd525e26c8ff2285f60bd066e0940304 901 Pfam PF00931 NB-ARC domain 135 392 5.5E-12 T 13-10-2018 IPR002182 NB-ARC GO:0043531 Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-6798695|Reactome: R-HSA-6803207|Reactome: R-HSA-8953750 RAM_19805 bd525e26c8ff2285f60bd066e0940304 901 Pfam PF13424 Tetratricopeptide repeat 726 796 2.6E-9 T 13-10-2018 RAM_19805 bd525e26c8ff2285f60bd066e0940304 901 SMART SM00028 608 641 210.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_19805 bd525e26c8ff2285f60bd066e0940304 901 SMART SM00028 727 760 6.8 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_19805 bd525e26c8ff2285f60bd066e0940304 901 SMART SM00028 767 800 10.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_19805 bd525e26c8ff2285f60bd066e0940304 901 SMART SM00028 568 601 36.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_19805 bd525e26c8ff2285f60bd066e0940304 901 SMART SM00028 847 880 140.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_19805 bd525e26c8ff2285f60bd066e0940304 901 SMART SM00028 687 720 88.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_19805 bd525e26c8ff2285f60bd066e0940304 901 SUPERFAMILY SSF48452 552 683 1.23E-8 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_19805 bd525e26c8ff2285f60bd066e0940304 901 Gene3D G3DSA:1.25.40.10 691 896 2.0E-32 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_37000 11a1f458f9dddea9dfb267d9646dc091 476 Gene3D G3DSA:3.20.20.140 51 227 9.6E-21 T 13-10-2018 RAM_37000 11a1f458f9dddea9dfb267d9646dc091 476 SUPERFAMILY SSF51338 10 451 8.64E-8 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_37000 11a1f458f9dddea9dfb267d9646dc091 476 SUPERFAMILY SSF51556 50 399 3.56E-15 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_37000 11a1f458f9dddea9dfb267d9646dc091 476 Gene3D G3DSA:3.10.310.70 69 172 9.6E-21 T 13-10-2018 RAM_37000 11a1f458f9dddea9dfb267d9646dc091 476 Gene3D G3DSA:3.20.20.140 263 424 1.7E-29 T 13-10-2018 RAM_37000 11a1f458f9dddea9dfb267d9646dc091 476 Gene3D G3DSA:2.30.40.10 32 50 9.6E-21 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_37000 11a1f458f9dddea9dfb267d9646dc091 476 Pfam PF07969 Amidohydrolase family 40 473 2.5E-31 T 13-10-2018 IPR013108 Amidohydrolase 3 RAM_05845 0e4a056c7201ca9f3ed2ea4410dd536a 459 Gene3D G3DSA:3.30.830.10 249 447 6.0E-41 T 13-10-2018 RAM_05845 0e4a056c7201ca9f3ed2ea4410dd536a 459 SUPERFAMILY SSF63411 262 446 2.17E-34 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RAM_05845 0e4a056c7201ca9f3ed2ea4410dd536a 459 SUPERFAMILY SSF63411 33 252 8.21E-32 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RAM_05845 0e4a056c7201ca9f3ed2ea4410dd536a 459 Pfam PF00675 Insulinase (Peptidase family M16) 76 187 8.9E-10 T 13-10-2018 IPR011765 Peptidase M16, N-terminal RAM_05845 0e4a056c7201ca9f3ed2ea4410dd536a 459 Gene3D G3DSA:3.30.830.10 38 243 1.4E-32 T 13-10-2018 RAM_05845 0e4a056c7201ca9f3ed2ea4410dd536a 459 Pfam PF05193 Peptidase M16 inactive domain 197 370 2.6E-14 T 13-10-2018 IPR007863 Peptidase M16, C-terminal RAM_42525 0a551dbe43f04962982d316650179532 313 Pfam PF13614 AAA domain 1 206 1.0E-35 T 13-10-2018 IPR025669 AAA domain RAM_42525 0a551dbe43f04962982d316650179532 313 Gene3D G3DSA:3.40.50.300 1 308 6.8E-54 T 13-10-2018 RAM_42525 0a551dbe43f04962982d316650179532 313 SUPERFAMILY SSF52540 1 305 1.04E-40 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_09980 f87793813cd3b8deb2a3201c5c0bc4e7 503 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 7 491 2.7E-141 T 13-10-2018 IPR004482 Mg chelatase-related protein RAM_09980 f87793813cd3b8deb2a3201c5c0bc4e7 503 Pfam PF13541 Subunit ChlI of Mg-chelatase 21 142 3.6E-35 T 13-10-2018 RAM_09980 f87793813cd3b8deb2a3201c5c0bc4e7 503 Gene3D G3DSA:3.40.50.300 187 388 1.1E-40 T 13-10-2018 RAM_09980 f87793813cd3b8deb2a3201c5c0bc4e7 503 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 403 498 1.7E-25 T 13-10-2018 IPR025158 Mg chelatase-related protein, C-terminal domain RAM_09980 f87793813cd3b8deb2a3201c5c0bc4e7 503 SUPERFAMILY SSF54211 4 168 2.47E-29 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RAM_09980 f87793813cd3b8deb2a3201c5c0bc4e7 503 SMART SM00382 210 392 2.5E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_09980 f87793813cd3b8deb2a3201c5c0bc4e7 503 Gene3D G3DSA:3.30.230.10 14 169 6.9E-8 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RAM_09980 f87793813cd3b8deb2a3201c5c0bc4e7 503 SUPERFAMILY SSF52540 190 496 1.15E-41 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_09980 f87793813cd3b8deb2a3201c5c0bc4e7 503 Pfam PF01078 Magnesium chelatase, subunit ChlI 190 392 7.9E-82 T 13-10-2018 IPR000523 Magnesium chelatase ChlI domain RAM_37470 facd96420f717e34a37e064a9e2ecc52 134 Gene3D G3DSA:1.20.890.50 78 116 2.9E-14 T 13-10-2018 RAM_37470 facd96420f717e34a37e064a9e2ecc52 134 ProDom PD026347 LSR2-LIKE LSR2 ANTIGEN IMMUNE PRECURSOR RESPONSE SIGNAL PLASMID LYSYL GP61 1 112 3.0E-20 T 13-10-2018 IPR024412 Lsr2 RAM_37470 facd96420f717e34a37e064a9e2ecc52 134 Pfam PF11774 Lsr2 1 111 6.2E-41 T 13-10-2018 IPR024412 Lsr2 RAM_37470 facd96420f717e34a37e064a9e2ecc52 134 Gene3D G3DSA:3.30.60.230 1 60 3.7E-26 T 13-10-2018 RAM_21425 4fc848e2ce23ceea6d897f91b28218bf 141 Pfam PF00355 Rieske [2Fe-2S] domain 49 126 2.4E-16 T 13-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RAM_21425 4fc848e2ce23ceea6d897f91b28218bf 141 Gene3D G3DSA:2.102.10.10 34 141 1.4E-27 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RAM_21425 4fc848e2ce23ceea6d897f91b28218bf 141 SUPERFAMILY SSF50022 45 138 2.88E-27 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RAM_21425 4fc848e2ce23ceea6d897f91b28218bf 141 PRINTS PR00162 Rieske 2Fe-2S subunit signature 79 90 9.6E-8 T 13-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 RAM_21425 4fc848e2ce23ceea6d897f91b28218bf 141 PRINTS PR00162 Rieske 2Fe-2S subunit signature 112 124 9.6E-8 T 13-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 RAM_21425 4fc848e2ce23ceea6d897f91b28218bf 141 PRINTS PR00162 Rieske 2Fe-2S subunit signature 99 111 9.6E-8 T 13-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 RAM_01990 94450b58b716efad4194092e6d4fe242 371 Gene3D G3DSA:3.20.20.210 2 371 2.5E-123 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 RAM_01990 94450b58b716efad4194092e6d4fe242 371 SUPERFAMILY SSF51726 7 369 2.09E-78 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 RAM_01990 94450b58b716efad4194092e6d4fe242 371 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 10 341 1.8E-10 T 13-10-2018 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 RAM_22100 3ad14dae61effa12685d6cddda464cef 185 Gene3D G3DSA:2.40.128.110 13 185 1.9E-60 T 13-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily RAM_22100 3ad14dae61effa12685d6cddda464cef 185 SMART SM00867 13 182 5.5E-74 T 13-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like RAM_22100 3ad14dae61effa12685d6cddda464cef 185 Pfam PF04264 YceI-like domain 14 180 2.8E-49 T 13-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like RAM_22100 3ad14dae61effa12685d6cddda464cef 185 SUPERFAMILY SSF101874 12 183 1.7E-60 T 13-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily RAM_01085 d1910aec81dbdbddc92fbb24a00f4444 414 SUPERFAMILY SSF53720 84 148 4.77E-6 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RAM_01085 d1910aec81dbdbddc92fbb24a00f4444 414 Pfam PF05893 Acyl-CoA reductase (LuxC) 89 408 4.0E-37 T 13-10-2018 IPR008670 Long-chain-fatty-acyl-CoA reductase, LuxC GO:0003995|GO:0008218|GO:0055114 KEGG: 00073+1.2.1.50|MetaCyc: PWY-7723 RAM_25115 103e0c36da48810d05f84a24aa4bc5f9 465 Gene3D G3DSA:3.40.50.300 44 252 1.5E-30 T 13-10-2018 RAM_25115 103e0c36da48810d05f84a24aa4bc5f9 465 SUPERFAMILY SSF52540 44 321 3.04E-26 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_25115 103e0c36da48810d05f84a24aa4bc5f9 465 Pfam PF00158 Sigma-54 interaction domain 171 229 1.4E-5 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RAM_11760 daa8ec3dd2b9c28a18383d33d9857963 464 Pfam PF00561 alpha/beta hydrolase fold 78 433 1.9E-26 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_11760 daa8ec3dd2b9c28a18383d33d9857963 464 SUPERFAMILY SSF53474 72 448 1.04E-26 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_44275 401a1a6bfe65a8a126f7e4e50338a33c 175 SUPERFAMILY SSF101898 20 175 1.26E-31 T 13-10-2018 RAM_44275 401a1a6bfe65a8a126f7e4e50338a33c 175 Pfam PF01436 NHL repeat 65 91 2.7E-7 T 13-10-2018 IPR001258 NHL repeat GO:0005515 RAM_44275 401a1a6bfe65a8a126f7e4e50338a33c 175 Pfam PF01436 NHL repeat 23 50 2.8E-7 T 13-10-2018 IPR001258 NHL repeat GO:0005515 RAM_44275 401a1a6bfe65a8a126f7e4e50338a33c 175 Gene3D G3DSA:2.120.10.30 2 175 7.4E-45 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RAM_26160 41d206c072f8a38e8e7b3ff02885424b 196 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 62 9.5E-17 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_26160 41d206c072f8a38e8e7b3ff02885424b 196 SUPERFAMILY SSF46689 2 85 5.13E-20 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_26160 41d206c072f8a38e8e7b3ff02885424b 196 Gene3D G3DSA:1.10.357.10 1 195 2.3E-41 T 13-10-2018 RAM_26160 41d206c072f8a38e8e7b3ff02885424b 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 1.8E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_26160 41d206c072f8a38e8e7b3ff02885424b 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 1.8E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_13410 e448fc9a1f2167681de285c7f4b18d7b 489 Gene3D G3DSA:1.20.1740.10 15 454 8.4E-43 T 13-10-2018 RAM_13410 e448fc9a1f2167681de285c7f4b18d7b 489 PIRSF PIRSF006060 5 482 2.5E-63 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RAM_13410 e448fc9a1f2167681de285c7f4b18d7b 489 Pfam PF13520 Amino acid permease 21 446 7.3E-42 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RAM_36570 9f74c222d49b66aed08d0ce886024d28 656 Pfam PF00676 Dehydrogenase E1 component 21 311 4.7E-76 T 13-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 RAM_36570 9f74c222d49b66aed08d0ce886024d28 656 SMART SM00861 336 510 3.8E-54 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain RAM_36570 9f74c222d49b66aed08d0ce886024d28 656 Gene3D G3DSA:3.40.50.920 523 655 5.2E-46 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RAM_36570 9f74c222d49b66aed08d0ce886024d28 656 Gene3D G3DSA:3.40.50.970 335 522 1.4E-76 T 13-10-2018 RAM_36570 9f74c222d49b66aed08d0ce886024d28 656 SUPERFAMILY SSF52518 15 345 3.93E-91 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_36570 9f74c222d49b66aed08d0ce886024d28 656 SUPERFAMILY SSF52518 336 534 2.36E-63 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_36570 9f74c222d49b66aed08d0ce886024d28 656 Pfam PF02779 Transketolase, pyrimidine binding domain 338 509 1.6E-45 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain RAM_36570 9f74c222d49b66aed08d0ce886024d28 656 Pfam PF02780 Transketolase, C-terminal domain 524 646 6.1E-37 T 13-10-2018 IPR033248 Transketolase, C-terminal domain RAM_36570 9f74c222d49b66aed08d0ce886024d28 656 SUPERFAMILY SSF52922 519 652 1.44E-38 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RAM_36570 9f74c222d49b66aed08d0ce886024d28 656 Gene3D G3DSA:3.40.50.970 2 327 1.8E-116 T 13-10-2018 RAM_16505 dacb89ced6fe6f6b6370fc01d0399dde 258 SUPERFAMILY SSF55486 49 226 2.94E-19 T 13-10-2018 RAM_16505 dacb89ced6fe6f6b6370fc01d0399dde 258 Pfam PF11350 Protein of unknown function (DUF3152) 50 254 1.3E-61 T 13-10-2018 IPR022603 Domain of unknown function DUF3152 RAM_09965 e177dc7a75a2cd2d492e05ea42f8b327 280 Hamap MF_00052_B Ribonuclease HII [rnhB]. 21 202 33.63 T 13-10-2018 IPR022898 Ribonuclease HII GO:0004523 RAM_09965 e177dc7a75a2cd2d492e05ea42f8b327 280 Gene3D G3DSA:3.30.420.10 10 224 3.3E-62 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RAM_09965 e177dc7a75a2cd2d492e05ea42f8b327 280 Pfam PF01351 Ribonuclease HII 23 202 3.3E-34 T 13-10-2018 IPR024567 Ribonuclease HII/HIII domain RAM_09965 e177dc7a75a2cd2d492e05ea42f8b327 280 SUPERFAMILY SSF53098 16 206 6.37E-56 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily RAM_28365 b5f1edd76744e531c3025c6d6fae773e 54 Pfam PF03861 ANTAR domain 1 42 7.6E-17 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 RAM_28365 b5f1edd76744e531c3025c6d6fae773e 54 Gene3D G3DSA:1.10.10.10 1 50 1.3E-11 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_28365 b5f1edd76744e531c3025c6d6fae773e 54 SMART SM01012 1 43 2.4E-12 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 RAM_28365 b5f1edd76744e531c3025c6d6fae773e 54 SUPERFAMILY SSF52172 1 42 3.98E-7 T 13-10-2018 IPR011006 CheY-like superfamily RAM_44045 bfbc2b7c91d05de936a49263dd7c6aa7 316 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 33 302 4.7E-79 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RAM_44045 bfbc2b7c91d05de936a49263dd7c6aa7 316 Gene3D G3DSA:3.40.50.1100 9 306 3.5E-105 T 13-10-2018 RAM_44045 bfbc2b7c91d05de936a49263dd7c6aa7 316 Gene3D G3DSA:3.40.50.1100 49 143 3.5E-105 T 13-10-2018 RAM_44045 bfbc2b7c91d05de936a49263dd7c6aa7 316 SUPERFAMILY SSF53686 5 310 2.49E-88 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RAM_09280 12ec341381fae40897e8ec0911442118 659 SUPERFAMILY SSF51735 374 594 7.92E-58 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_09280 12ec341381fae40897e8ec0911442118 659 Pfam PF07993 Male sterility protein 6 230 2.8E-44 T 13-10-2018 IPR013120 Male sterility, NAD-binding Reactome: R-HSA-8848584 RAM_09280 12ec341381fae40897e8ec0911442118 659 Gene3D G3DSA:3.40.50.720 363 621 8.6E-58 T 13-10-2018 RAM_09280 12ec341381fae40897e8ec0911442118 659 Gene3D G3DSA:3.40.50.720 1 362 5.8E-65 T 13-10-2018 RAM_09280 12ec341381fae40897e8ec0911442118 659 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 453 464 3.2E-15 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_09280 12ec341381fae40897e8ec0911442118 659 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 379 396 3.2E-15 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_09280 12ec341381fae40897e8ec0911442118 659 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 502 518 3.2E-15 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_09280 12ec341381fae40897e8ec0911442118 659 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 528 547 3.2E-15 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_09280 12ec341381fae40897e8ec0911442118 659 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 549 566 3.2E-15 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_09280 12ec341381fae40897e8ec0911442118 659 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 453 464 6.1E-6 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_09280 12ec341381fae40897e8ec0911442118 659 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 528 547 6.1E-6 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_09280 12ec341381fae40897e8ec0911442118 659 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 508 516 6.1E-6 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_09280 12ec341381fae40897e8ec0911442118 659 Pfam PF00106 short chain dehydrogenase 379 567 1.5E-45 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_09280 12ec341381fae40897e8ec0911442118 659 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 378 564 0.001 T 13-10-2018 RAM_09280 12ec341381fae40897e8ec0911442118 659 SUPERFAMILY SSF51735 2 359 1.99E-43 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_11820 a78bbd50d4457701adf38b59c3694150 308 SUPERFAMILY SSF48576 17 293 3.31E-76 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily RAM_11820 a78bbd50d4457701adf38b59c3694150 308 Gene3D G3DSA:1.10.600.10 4 272 6.3E-88 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily RAM_11820 a78bbd50d4457701adf38b59c3694150 308 ProSitePatterns PS01045 Squalene and phytoene synthases signature 2. 169 194 - T 13-10-2018 IPR019845 Squalene/phytoene synthase, conserved site GO:0016765 Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 RAM_11820 a78bbd50d4457701adf38b59c3694150 308 Pfam PF00494 Squalene/phytoene synthase 27 282 2.4E-68 T 13-10-2018 RAM_11820 a78bbd50d4457701adf38b59c3694150 308 ProSitePatterns PS01044 Squalene and phytoene synthases signature 1. 137 152 - T 13-10-2018 IPR019845 Squalene/phytoene synthase, conserved site GO:0016765 Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 RAM_31260 9d3002f3dc210e1938383a0fef0846eb 228 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 24 220 6.5E-46 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 RAM_31260 9d3002f3dc210e1938383a0fef0846eb 228 Gene3D G3DSA:3.40.50.1240 22 227 4.4E-47 T 13-10-2018 IPR029033 Histidine phosphatase superfamily RAM_31260 9d3002f3dc210e1938383a0fef0846eb 228 SUPERFAMILY SSF53254 22 224 2.23E-47 T 13-10-2018 IPR029033 Histidine phosphatase superfamily RAM_31260 9d3002f3dc210e1938383a0fef0846eb 228 SMART SM00855 23 181 8.1E-11 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 RAM_41425 7efbb375a1175a6ba89a04a0b36a3f00 465 PRINTS PR00145 Argininosuccinate lyase family signature 313 329 2.9E-6 T 13-10-2018 RAM_41425 7efbb375a1175a6ba89a04a0b36a3f00 465 PRINTS PR00145 Argininosuccinate lyase family signature 171 191 2.9E-6 T 13-10-2018 RAM_41425 7efbb375a1175a6ba89a04a0b36a3f00 465 PRINTS PR00145 Argininosuccinate lyase family signature 129 151 2.9E-6 T 13-10-2018 RAM_41425 7efbb375a1175a6ba89a04a0b36a3f00 465 Gene3D G3DSA:1.10.275.10 7 134 1.3E-51 T 13-10-2018 IPR024083 Fumarase/histidase, N-terminal RAM_41425 7efbb375a1175a6ba89a04a0b36a3f00 465 SUPERFAMILY SSF48557 6 460 1.57E-138 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 RAM_41425 7efbb375a1175a6ba89a04a0b36a3f00 465 Pfam PF00206 Lyase 14 338 1.2E-96 T 13-10-2018 IPR022761 Fumarate lyase, N-terminal RAM_41425 7efbb375a1175a6ba89a04a0b36a3f00 465 Gene3D G3DSA:1.10.40.30 404 460 1.4E-27 T 13-10-2018 RAM_41425 7efbb375a1175a6ba89a04a0b36a3f00 465 Pfam PF10415 Fumarase C C-terminus 404 461 1.2E-21 T 13-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RAM_41425 7efbb375a1175a6ba89a04a0b36a3f00 465 PRINTS PR00149 Fumarate lyase superfamily signature 176 194 6.6E-33 T 13-10-2018 IPR000362 Fumarate lyase family RAM_41425 7efbb375a1175a6ba89a04a0b36a3f00 465 PRINTS PR00149 Fumarate lyase superfamily signature 130 148 6.6E-33 T 13-10-2018 IPR000362 Fumarate lyase family RAM_41425 7efbb375a1175a6ba89a04a0b36a3f00 465 PRINTS PR00149 Fumarate lyase superfamily signature 267 294 6.6E-33 T 13-10-2018 IPR000362 Fumarate lyase family RAM_41425 7efbb375a1175a6ba89a04a0b36a3f00 465 PRINTS PR00149 Fumarate lyase superfamily signature 313 329 6.6E-33 T 13-10-2018 IPR000362 Fumarate lyase family RAM_41425 7efbb375a1175a6ba89a04a0b36a3f00 465 Gene3D G3DSA:1.20.200.10 135 403 7.2E-105 T 13-10-2018 RAM_41425 7efbb375a1175a6ba89a04a0b36a3f00 465 ProSitePatterns PS00163 Fumarate lyases signature. 313 322 - T 13-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 RAM_41425 7efbb375a1175a6ba89a04a0b36a3f00 465 Hamap MF_00743 Fumarate hydratase class II [fumC]. 6 463 79.177 T 13-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RAM_12065 577dfec6ad65eaf2b46f707ba770ff83 238 Pfam PF00069 Protein kinase domain 57 179 1.1E-10 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_12065 577dfec6ad65eaf2b46f707ba770ff83 238 SMART SM00220 12 215 1.4E-9 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_12065 577dfec6ad65eaf2b46f707ba770ff83 238 Gene3D G3DSA:3.30.200.20 2 54 2.4E-6 T 13-10-2018 RAM_12065 577dfec6ad65eaf2b46f707ba770ff83 238 SUPERFAMILY SSF56112 4 211 4.6E-27 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_12065 577dfec6ad65eaf2b46f707ba770ff83 238 Gene3D G3DSA:1.10.510.10 55 223 1.1E-23 T 13-10-2018 RAM_39310 0b3d24224bc6962339b90a0e2cbad38c 321 Pfam PF01965 DJ-1/PfpI family 70 175 3.0E-11 T 13-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 RAM_39310 0b3d24224bc6962339b90a0e2cbad38c 321 Pfam PF12833 Helix-turn-helix domain 237 316 1.1E-18 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_39310 0b3d24224bc6962339b90a0e2cbad38c 321 Gene3D G3DSA:3.40.50.880 6 205 2.0E-45 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_39310 0b3d24224bc6962339b90a0e2cbad38c 321 Gene3D G3DSA:1.10.10.60 215 318 1.4E-24 T 13-10-2018 RAM_39310 0b3d24224bc6962339b90a0e2cbad38c 321 SMART SM00342 231 314 6.4E-22 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_39310 0b3d24224bc6962339b90a0e2cbad38c 321 SUPERFAMILY SSF46689 268 317 9.32E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_39310 0b3d24224bc6962339b90a0e2cbad38c 321 SUPERFAMILY SSF52317 7 196 5.67E-38 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_39310 0b3d24224bc6962339b90a0e2cbad38c 321 SUPERFAMILY SSF46689 217 265 2.42E-7 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_11270 6aeaec147d83300eb973996a9a294062 403 Gene3D G3DSA:1.10.630.10 2 403 6.1E-144 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_11270 6aeaec147d83300eb973996a9a294062 403 SUPERFAMILY SSF48264 11 403 7.73E-102 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_11270 6aeaec147d83300eb973996a9a294062 403 PRINTS PR00359 B-class P450 signature 141 157 1.2E-60 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_11270 6aeaec147d83300eb973996a9a294062 403 PRINTS PR00359 B-class P450 signature 276 287 1.2E-60 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_11270 6aeaec147d83300eb973996a9a294062 403 PRINTS PR00359 B-class P450 signature 195 217 1.2E-60 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_11270 6aeaec147d83300eb973996a9a294062 403 PRINTS PR00359 B-class P450 signature 352 363 1.2E-60 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_11270 6aeaec147d83300eb973996a9a294062 403 PRINTS PR00359 B-class P450 signature 343 352 1.2E-60 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_11270 6aeaec147d83300eb973996a9a294062 403 PRINTS PR00359 B-class P450 signature 294 321 1.2E-60 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_11270 6aeaec147d83300eb973996a9a294062 403 PRINTS PR00359 B-class P450 signature 95 106 1.2E-60 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_11270 6aeaec147d83300eb973996a9a294062 403 PRINTS PR00359 B-class P450 signature 322 337 1.2E-60 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_11270 6aeaec147d83300eb973996a9a294062 403 PRINTS PR00359 B-class P450 signature 158 173 1.2E-60 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_11270 6aeaec147d83300eb973996a9a294062 403 Pfam PF00067 Cytochrome P450 189 374 6.9E-24 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_11270 6aeaec147d83300eb973996a9a294062 403 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 345 354 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RAM_12285 9a7d707d8cba4f329561d9a7a57e19df 394 PIRSF PIRSF000530 1 392 1.9E-107 T 13-10-2018 IPR006206 Mevalonate/galactokinase GO:0005524|GO:0005737|GO:0016301|GO:0016773 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 RAM_12285 9a7d707d8cba4f329561d9a7a57e19df 394 PRINTS PR00473 Galactokinase signature 113 131 5.2E-25 T 13-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 RAM_12285 9a7d707d8cba4f329561d9a7a57e19df 394 PRINTS PR00473 Galactokinase signature 275 289 5.2E-25 T 13-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 RAM_12285 9a7d707d8cba4f329561d9a7a57e19df 394 PRINTS PR00473 Galactokinase signature 94 105 5.2E-25 T 13-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 RAM_12285 9a7d707d8cba4f329561d9a7a57e19df 394 PRINTS PR00473 Galactokinase signature 27 45 5.2E-25 T 13-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 RAM_12285 9a7d707d8cba4f329561d9a7a57e19df 394 PRINTS PR00959 Mevalonate kinase family signature 171 190 9.4E-39 T 13-10-2018 RAM_12285 9a7d707d8cba4f329561d9a7a57e19df 394 PRINTS PR00959 Mevalonate kinase family signature 338 355 9.4E-39 T 13-10-2018 RAM_12285 9a7d707d8cba4f329561d9a7a57e19df 394 PRINTS PR00959 Mevalonate kinase family signature 120 142 9.4E-39 T 13-10-2018 RAM_12285 9a7d707d8cba4f329561d9a7a57e19df 394 PRINTS PR00959 Mevalonate kinase family signature 25 49 9.4E-39 T 13-10-2018 RAM_12285 9a7d707d8cba4f329561d9a7a57e19df 394 Pfam PF10509 Galactokinase galactose-binding signature 10 58 2.2E-20 T 13-10-2018 IPR019539 Galactokinase galactose-binding domain GO:0005534 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 RAM_12285 9a7d707d8cba4f329561d9a7a57e19df 394 Gene3D G3DSA:3.30.230.10 22 210 8.8E-117 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RAM_12285 9a7d707d8cba4f329561d9a7a57e19df 394 Pfam PF08544 GHMP kinases C terminal 291 371 1.3E-12 T 13-10-2018 IPR013750 GHMP kinase, C-terminal domain RAM_12285 9a7d707d8cba4f329561d9a7a57e19df 394 Gene3D G3DSA:3.30.70.890 211 367 8.8E-117 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily RAM_12285 9a7d707d8cba4f329561d9a7a57e19df 394 TIGRFAM TIGR00131 gal_kin: galactokinase 7 390 1.7E-81 T 13-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 RAM_12285 9a7d707d8cba4f329561d9a7a57e19df 394 SUPERFAMILY SSF55060 217 390 2.06E-46 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily RAM_12285 9a7d707d8cba4f329561d9a7a57e19df 394 SUPERFAMILY SSF54211 5 211 4.4E-51 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RAM_12285 9a7d707d8cba4f329561d9a7a57e19df 394 Pfam PF00288 GHMP kinases N terminal domain 115 189 3.2E-11 T 13-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 RAM_12285 9a7d707d8cba4f329561d9a7a57e19df 394 ProSitePatterns PS00106 Galactokinase signature. 27 38 - T 13-10-2018 IPR019741 Galactokinase, conserved site KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 RAM_37200 10ca9b05ac01175b4f7c69c91e9ce4c1 242 Pfam PF01323 DSBA-like thioredoxin domain 3 204 3.8E-31 T 13-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 RAM_37200 10ca9b05ac01175b4f7c69c91e9ce4c1 242 Gene3D G3DSA:3.40.30.10 1 210 3.4E-51 T 13-10-2018 RAM_37200 10ca9b05ac01175b4f7c69c91e9ce4c1 242 SUPERFAMILY SSF52833 2 211 3.23E-28 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RAM_46010 ef64752e70fe6b5a000c98a641e9f064 277 SUPERFAMILY SSF46955 3 103 2.56E-22 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily RAM_46010 ef64752e70fe6b5a000c98a641e9f064 277 SMART SM00422 3 72 1.1E-24 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_46010 ef64752e70fe6b5a000c98a641e9f064 277 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 15 28 1.2E-10 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_46010 ef64752e70fe6b5a000c98a641e9f064 277 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 4 15 1.2E-10 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_46010 ef64752e70fe6b5a000c98a641e9f064 277 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 39 59 1.2E-10 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_46010 ef64752e70fe6b5a000c98a641e9f064 277 Pfam PF13411 MerR HTH family regulatory protein 3 70 4.0E-17 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_46010 ef64752e70fe6b5a000c98a641e9f064 277 Gene3D G3DSA:1.10.1660.10 5 277 1.9E-25 T 13-10-2018 RAM_22880 3fc775a847486c3a56dbec14c14b01cc 286 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 149 177 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_22880 3fc775a847486c3a56dbec14c14b01cc 286 Pfam PF00106 short chain dehydrogenase 18 204 1.1E-45 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_22880 3fc775a847486c3a56dbec14c14b01cc 286 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 142 150 6.5E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_22880 3fc775a847486c3a56dbec14c14b01cc 286 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 181 6.5E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_22880 3fc775a847486c3a56dbec14c14b01cc 286 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 89 100 6.5E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_22880 3fc775a847486c3a56dbec14c14b01cc 286 Gene3D G3DSA:3.40.50.720 2 284 2.0E-63 T 13-10-2018 RAM_22880 3fc775a847486c3a56dbec14c14b01cc 286 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 16 196 2.8E-4 T 13-10-2018 RAM_22880 3fc775a847486c3a56dbec14c14b01cc 286 SUPERFAMILY SSF51735 12 281 4.43E-64 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_22880 3fc775a847486c3a56dbec14c14b01cc 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 1.1E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_22880 3fc775a847486c3a56dbec14c14b01cc 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 136 152 1.1E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_22880 3fc775a847486c3a56dbec14c14b01cc 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 17 34 1.1E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_22880 3fc775a847486c3a56dbec14c14b01cc 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 89 100 1.1E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_22880 3fc775a847486c3a56dbec14c14b01cc 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 1.1E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_13850 4d9cecb93e3d648b9686b4217976835b 88 SUPERFAMILY SSF55594 1 87 6.28E-21 T 13-10-2018 IPR035895 HPr-like superfamily RAM_13850 4d9cecb93e3d648b9686b4217976835b 88 Gene3D G3DSA:3.30.1340.10 1 86 7.4E-23 T 13-10-2018 IPR035895 HPr-like superfamily RAM_13850 4d9cecb93e3d648b9686b4217976835b 88 Pfam PF00381 PTS HPr component phosphorylation site 3 83 1.2E-22 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like RAM_13850 4d9cecb93e3d648b9686b4217976835b 88 PRINTS PR00107 Phosphocarrier protein signature 39 54 7.0E-11 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like RAM_13850 4d9cecb93e3d648b9686b4217976835b 88 PRINTS PR00107 Phosphocarrier protein signature 54 71 7.0E-11 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like RAM_13850 4d9cecb93e3d648b9686b4217976835b 88 PRINTS PR00107 Phosphocarrier protein signature 13 29 7.0E-11 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like RAM_13850 4d9cecb93e3d648b9686b4217976835b 88 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 13 20 - T 13-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site RAM_13850 4d9cecb93e3d648b9686b4217976835b 88 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 82 8.2E-25 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like RAM_06265 62f4856e7ccd6ebbc73f26194855443a 118 ProSitePatterns PS00354 HMG-I and HMG-Y DNA-binding domain (A+T-hook). 88 98 - T 13-10-2018 IPR000637 HMG-I/HMG-Y, DNA-binding, conserved site GO:0006355 RAM_06265 62f4856e7ccd6ebbc73f26194855443a 118 Pfam PF02467 Transcription factor WhiB 30 78 2.4E-15 T 13-10-2018 IPR034768 WhiB-like iron-sulfur binding domain RAM_06265 62f4856e7ccd6ebbc73f26194855443a 118 Hamap MF_01479 Transcriptional regulator WhiB [whiB]. 1 92 15.665 T 13-10-2018 IPR003482 Transcription factor WhiB RAM_01595 7574f0111ad3dac8bbfdc280d319ba1e 149 Gene3D G3DSA:1.10.10.10 1 141 2.6E-33 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_01595 7574f0111ad3dac8bbfdc280d319ba1e 149 SMART SM00347 27 125 6.0E-17 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_01595 7574f0111ad3dac8bbfdc280d319ba1e 149 PRINTS PR00598 Bacterial regulatory protein MarR family signature 68 83 1.4E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_01595 7574f0111ad3dac8bbfdc280d319ba1e 149 PRINTS PR00598 Bacterial regulatory protein MarR family signature 87 103 1.4E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_01595 7574f0111ad3dac8bbfdc280d319ba1e 149 PRINTS PR00598 Bacterial regulatory protein MarR family signature 51 67 1.4E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_01595 7574f0111ad3dac8bbfdc280d319ba1e 149 SUPERFAMILY SSF46785 4 138 4.97E-32 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_01595 7574f0111ad3dac8bbfdc280d319ba1e 149 Pfam PF01047 MarR family 34 92 6.6E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_20490 094cb5072f5ee2d8201c6a6a028b7071 153 Gene3D G3DSA:1.10.10.10 6 150 6.7E-34 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_20490 094cb5072f5ee2d8201c6a6a028b7071 153 PRINTS PR00598 Bacterial regulatory protein MarR family signature 61 77 1.4E-16 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_20490 094cb5072f5ee2d8201c6a6a028b7071 153 PRINTS PR00598 Bacterial regulatory protein MarR family signature 97 113 1.4E-16 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_20490 094cb5072f5ee2d8201c6a6a028b7071 153 PRINTS PR00598 Bacterial regulatory protein MarR family signature 127 147 1.4E-16 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_20490 094cb5072f5ee2d8201c6a6a028b7071 153 PRINTS PR00598 Bacterial regulatory protein MarR family signature 78 93 1.4E-16 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_20490 094cb5072f5ee2d8201c6a6a028b7071 153 Pfam PF01047 MarR family 49 101 1.1E-14 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_20490 094cb5072f5ee2d8201c6a6a028b7071 153 SUPERFAMILY SSF46785 13 146 5.66E-32 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_20490 094cb5072f5ee2d8201c6a6a028b7071 153 SMART SM00347 37 137 5.6E-23 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_21055 291fced426042c86ecfd16fb9439b689 619 SUPERFAMILY SSF53335 74 268 1.84E-48 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_21055 291fced426042c86ecfd16fb9439b689 619 SUPERFAMILY SSF47757 8 76 9.68E-13 T 13-10-2018 RAM_21055 291fced426042c86ecfd16fb9439b689 619 SMART SM00091 299 364 42.0 T 13-10-2018 IPR000014 PAS domain RAM_21055 291fced426042c86ecfd16fb9439b689 619 SMART SM00091 501 567 1.1E-5 T 13-10-2018 IPR000014 PAS domain RAM_21055 291fced426042c86ecfd16fb9439b689 619 Pfam PF01739 CheR methyltransferase, SAM binding domain 74 264 6.3E-54 T 13-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal RAM_21055 291fced426042c86ecfd16fb9439b689 619 SMART SM00138 8 269 5.0E-81 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RAM_21055 291fced426042c86ecfd16fb9439b689 619 Gene3D G3DSA:3.30.450.20 487 614 2.7E-13 T 13-10-2018 RAM_21055 291fced426042c86ecfd16fb9439b689 619 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 298 414 1.5E-9 T 13-10-2018 IPR000014 PAS domain RAM_21055 291fced426042c86ecfd16fb9439b689 619 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 499 611 5.0E-10 T 13-10-2018 IPR000014 PAS domain RAM_21055 291fced426042c86ecfd16fb9439b689 619 Pfam PF00989 PAS fold 301 409 1.1E-8 T 13-10-2018 IPR013767 PAS fold GO:0006355 RAM_21055 291fced426042c86ecfd16fb9439b689 619 Gene3D G3DSA:3.30.450.20 298 434 4.1E-11 T 13-10-2018 RAM_21055 291fced426042c86ecfd16fb9439b689 619 SUPERFAMILY SSF55785 500 607 2.97E-14 T 13-10-2018 IPR035965 PAS domain superfamily RAM_21055 291fced426042c86ecfd16fb9439b689 619 Gene3D G3DSA:3.40.50.150 73 271 1.6E-61 T 13-10-2018 RAM_21055 291fced426042c86ecfd16fb9439b689 619 SUPERFAMILY SSF55785 290 410 1.4E-10 T 13-10-2018 IPR035965 PAS domain superfamily RAM_21055 291fced426042c86ecfd16fb9439b689 619 Pfam PF03705 CheR methyltransferase, all-alpha domain 10 60 5.0E-16 T 13-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal RAM_21055 291fced426042c86ecfd16fb9439b689 619 PRINTS PR00996 Glutamate methyltransferase family signature 143 159 7.2E-31 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RAM_21055 291fced426042c86ecfd16fb9439b689 619 PRINTS PR00996 Glutamate methyltransferase family signature 209 223 7.2E-31 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RAM_21055 291fced426042c86ecfd16fb9439b689 619 PRINTS PR00996 Glutamate methyltransferase family signature 67 79 7.2E-31 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RAM_21055 291fced426042c86ecfd16fb9439b689 619 PRINTS PR00996 Glutamate methyltransferase family signature 228 251 7.2E-31 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RAM_21055 291fced426042c86ecfd16fb9439b689 619 PRINTS PR00996 Glutamate methyltransferase family signature 107 127 7.2E-31 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RAM_21055 291fced426042c86ecfd16fb9439b689 619 PRINTS PR00996 Glutamate methyltransferase family signature 30 43 7.2E-31 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RAM_21055 291fced426042c86ecfd16fb9439b689 619 Pfam PF08448 PAS fold 507 613 1.9E-6 T 13-10-2018 IPR013656 PAS fold-4 RAM_05820 128e4238ef3a744890dc129c4bf9932b 122 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 116 2.0E-6 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RAM_05820 128e4238ef3a744890dc129c4bf9932b 122 Gene3D G3DSA:3.10.180.10 6 121 1.9E-17 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_05820 128e4238ef3a744890dc129c4bf9932b 122 SUPERFAMILY SSF54593 1 119 3.44E-21 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_02115 707d49752b0f526bcc82944d529026fe 342 Gene3D G3DSA:3.40.50.1100 58 166 2.5E-98 T 13-10-2018 RAM_02115 707d49752b0f526bcc82944d529026fe 342 Gene3D G3DSA:3.40.50.1100 24 330 2.5E-98 T 13-10-2018 RAM_02115 707d49752b0f526bcc82944d529026fe 342 PIRSF PIRSF006278 9 341 3.0E-80 T 13-10-2018 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase RAM_02115 707d49752b0f526bcc82944d529026fe 342 SUPERFAMILY SSF53686 15 334 3.43E-71 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RAM_02115 707d49752b0f526bcc82944d529026fe 342 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 21 324 5.4E-51 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RAM_34145 581328c5479a7fb84493c698f6fd7eb9 138 SUPERFAMILY SSF54593 10 120 1.14E-21 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_34145 581328c5479a7fb84493c698f6fd7eb9 138 Gene3D G3DSA:3.10.180.10 14 123 2.4E-21 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_34145 581328c5479a7fb84493c698f6fd7eb9 138 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 10 118 2.4E-10 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RAM_43790 507cf8445f2f26d8422ac5e1e6bcf0bc 1046 Pfam PF00672 HAMP domain 383 451 4.4E-9 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_43790 507cf8445f2f26d8422ac5e1e6bcf0bc 1046 SMART SM00304 383 455 1.1E-4 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_43790 507cf8445f2f26d8422ac5e1e6bcf0bc 1046 Pfam PF08376 Nitrate and nitrite sensing 107 345 8.5E-34 T 13-10-2018 IPR013587 Nitrate/nitrite sensing protein RAM_43790 507cf8445f2f26d8422ac5e1e6bcf0bc 1046 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 571 678 2.1E-8 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_43790 507cf8445f2f26d8422ac5e1e6bcf0bc 1046 Gene3D G3DSA:3.30.565.10 504 669 5.1E-14 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_43790 507cf8445f2f26d8422ac5e1e6bcf0bc 1046 SMART SM00387 567 680 1.4E-9 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_43790 507cf8445f2f26d8422ac5e1e6bcf0bc 1046 SUPERFAMILY SSF55874 553 677 2.36E-16 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_27195 d287e2b6e6d6a428c509a6c22a7547e6 209 Gene3D G3DSA:1.10.10.60 10 71 3.1E-8 T 13-10-2018 RAM_27195 d287e2b6e6d6a428c509a6c22a7547e6 209 SUPERFAMILY SSF48498 132 208 2.57E-5 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_27195 d287e2b6e6d6a428c509a6c22a7547e6 209 Pfam PF00440 Bacterial regulatory proteins, tetR family 36 76 9.2E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_27195 d287e2b6e6d6a428c509a6c22a7547e6 209 Gene3D G3DSA:1.10.357.10 72 208 1.4E-13 T 13-10-2018 RAM_27195 d287e2b6e6d6a428c509a6c22a7547e6 209 SUPERFAMILY SSF46689 18 99 1.03E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_07675 56156c96d99180d0899ddcef5dfd323a 359 Gene3D G3DSA:1.50.10.10 27 354 6.2E-97 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 RAM_07675 56156c96d99180d0899ddcef5dfd323a 359 Pfam PF07470 Glycosyl Hydrolase Family 88 45 353 6.6E-62 T 13-10-2018 IPR010905 Glycosyl hydrolase, family 88 RAM_07675 56156c96d99180d0899ddcef5dfd323a 359 SUPERFAMILY SSF48208 45 353 3.4E-37 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_06115 f499363b5c3003161b6d651b39e9f86a 260 SUPERFAMILY SSF161098 2 250 6.26E-50 T 13-10-2018 IPR035906 MetI-like superfamily RAM_06115 f499363b5c3003161b6d651b39e9f86a 260 Gene3D G3DSA:1.10.3720.10 1 256 4.9E-47 T 13-10-2018 IPR035906 MetI-like superfamily RAM_06115 f499363b5c3003161b6d651b39e9f86a 260 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 72 244 1.6E-12 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_28255 d107029a5578f5c20ba4f8e7b5ffc87b 203 Pfam PF05988 Bacterial protein of unknown function (DUF899) 14 90 1.4E-22 T 13-10-2018 IPR010296 Protein of unknown function DUF899, thioredoxin-like RAM_26585 0424bb32a56a9c19600186b4b9e2fef8 137 Pfam PF07332 Putative Actinobacterial Holin-X, holin superfamily III 16 132 4.9E-32 T 13-10-2018 IPR009937 Putative Actinobacterial Holin-X, holin superfamily III RAM_20760 d02a48757ad1d4a53bc559df75a4eec1 320 Gene3D G3DSA:1.10.600.10 10 303 3.2E-86 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily RAM_20760 d02a48757ad1d4a53bc559df75a4eec1 320 SUPERFAMILY SSF48576 19 305 3.31E-73 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily RAM_20760 d02a48757ad1d4a53bc559df75a4eec1 320 Pfam PF00494 Squalene/phytoene synthase 29 290 1.5E-64 T 13-10-2018 RAM_20760 d02a48757ad1d4a53bc559df75a4eec1 320 ProSitePatterns PS01045 Squalene and phytoene synthases signature 2. 174 199 - T 13-10-2018 IPR019845 Squalene/phytoene synthase, conserved site GO:0016765 Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 RAM_00840 4ff53de04791e72d5e7b6636349c796c 309 Gene3D G3DSA:3.30.565.10 187 308 4.5E-25 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_00840 4ff53de04791e72d5e7b6636349c796c 309 Gene3D G3DSA:3.30.450.40 1 114 1.3E-15 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_00840 4ff53de04791e72d5e7b6636349c796c 309 Pfam PF13185 GAF domain 10 92 3.5E-9 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_00840 4ff53de04791e72d5e7b6636349c796c 309 Pfam PF07730 Histidine kinase 109 175 2.4E-13 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_00840 4ff53de04791e72d5e7b6636349c796c 309 SUPERFAMILY SSF55781 8 92 4.91E-14 T 13-10-2018 RAM_00840 4ff53de04791e72d5e7b6636349c796c 309 Pfam PF13581 Histidine kinase-like ATPase domain 215 272 1.8E-7 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_00840 4ff53de04791e72d5e7b6636349c796c 309 SUPERFAMILY SSF55874 186 308 2.88E-14 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_39725 753a9bb20f522bca34c2ed321958a2d4 179 Gene3D G3DSA:3.40.630.30 10 178 1.3E-44 T 13-10-2018 RAM_39725 753a9bb20f522bca34c2ed321958a2d4 179 Pfam PF13302 Acetyltransferase (GNAT) domain 23 162 2.7E-29 T 13-10-2018 IPR000182 GNAT domain RAM_39725 753a9bb20f522bca34c2ed321958a2d4 179 SUPERFAMILY SSF55729 17 164 7.78E-35 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_30800 1880c2677d01353e12c91fa2092bd4ac 250 Pfam PF01479 S4 domain 10 54 1.4E-13 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_30800 1880c2677d01353e12c91fa2092bd4ac 250 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 112 126 - T 13-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 RAM_30800 1880c2677d01353e12c91fa2092bd4ac 250 SUPERFAMILY SSF55174 8 67 2.94E-14 T 13-10-2018 RAM_30800 1880c2677d01353e12c91fa2092bd4ac 250 Pfam PF00849 RNA pseudouridylate synthase 72 205 2.1E-18 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RAM_30800 1880c2677d01353e12c91fa2092bd4ac 250 SMART SM00363 10 67 1.2E-9 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_30800 1880c2677d01353e12c91fa2092bd4ac 250 Gene3D G3DSA:3.30.70.1560 136 226 5.0E-46 T 13-10-2018 RAM_30800 1880c2677d01353e12c91fa2092bd4ac 250 Gene3D G3DSA:3.30.70.580 74 234 5.0E-46 T 13-10-2018 RAM_30800 1880c2677d01353e12c91fa2092bd4ac 250 SUPERFAMILY SSF55120 58 248 4.0E-41 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 RAM_30800 1880c2677d01353e12c91fa2092bd4ac 250 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 76 237 1.6E-37 T 13-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 RAM_30800 1880c2677d01353e12c91fa2092bd4ac 250 Gene3D G3DSA:3.10.290.10 5 68 5.5E-21 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 RAM_18645 c63cb57164d478bc1be1524225f17540 1062 Pfam PF17389 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain 623 959 1.8E-88 T 13-10-2018 IPR035396 Alpha-L-rhamnosidase, six-hairpin glycosidase domain RAM_18645 c63cb57164d478bc1be1524225f17540 1062 SUPERFAMILY SSF49785 145 255 7.17E-12 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_18645 c63cb57164d478bc1be1524225f17540 1062 Gene3D G3DSA:1.50.10.10 145 1058 0.0 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 RAM_18645 c63cb57164d478bc1be1524225f17540 1062 Gene3D G3DSA:2.60.120.260 158 324 0.0 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_18645 c63cb57164d478bc1be1524225f17540 1062 Gene3D G3DSA:2.60.40.10 33 138 5.0E-35 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_18645 c63cb57164d478bc1be1524225f17540 1062 Pfam PF17390 Bacterial alpha-L-rhamnosidase C-terminal domain 961 1032 1.2E-16 T 13-10-2018 IPR035398 Alpha-L-rhamnosidase C-terminal domain RAM_18645 c63cb57164d478bc1be1524225f17540 1062 Pfam PF05592 Bacterial alpha-L-rhamnosidase concanavalin-like domain 521 615 1.7E-19 T 13-10-2018 IPR008902 Alpha-L-rhamnosidase, concanavalin-like domain RAM_18645 c63cb57164d478bc1be1524225f17540 1062 SUPERFAMILY SSF48208 639 1025 1.09E-36 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_18645 c63cb57164d478bc1be1524225f17540 1062 SUPERFAMILY SSF49785 279 401 1.98E-5 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_18645 c63cb57164d478bc1be1524225f17540 1062 PIRSF PIRSF010631 279 1062 1.2E-214 T 13-10-2018 IPR016007 Alpha-L-rhamnosidase RAM_18645 c63cb57164d478bc1be1524225f17540 1062 PIRSF PIRSF010631 7 256 9.0E-43 T 13-10-2018 IPR016007 Alpha-L-rhamnosidase RAM_18645 c63cb57164d478bc1be1524225f17540 1062 Pfam PF08531 Alpha-L-rhamnosidase N-terminal domain 339 508 5.4E-55 T 13-10-2018 IPR013737 Bacterial alpha-L-rhamnosidase N-terminal RAM_17495 b62d53acaae9bbda2ced0c29e168cf9f 291 SMART SM00530 10 83 4.0E-9 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_17495 b62d53acaae9bbda2ced0c29e168cf9f 291 SUPERFAMILY SSF47413 30 80 5.35E-9 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_17495 b62d53acaae9bbda2ced0c29e168cf9f 291 Gene3D G3DSA:3.30.450.180 108 283 1.4E-14 T 13-10-2018 RAM_17495 b62d53acaae9bbda2ced0c29e168cf9f 291 Pfam PF13560 Helix-turn-helix domain 6 86 9.3E-17 T 13-10-2018 RAM_17495 b62d53acaae9bbda2ced0c29e168cf9f 291 Gene3D G3DSA:1.10.260.40 24 100 1.4E-9 T 13-10-2018 RAM_08590 a7adf0524fd7eb9e3204febc42703e03 274 Pfam PF00296 Luciferase-like monooxygenase 117 253 8.0E-5 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_08590 a7adf0524fd7eb9e3204febc42703e03 274 Pfam PF00296 Luciferase-like monooxygenase 12 93 1.3E-14 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_08590 a7adf0524fd7eb9e3204febc42703e03 274 TIGRFAM TIGR03620 F420_MSMEG_4141: probable F420-dependent oxidoreductase, MSMEG_4141 family 3 265 3.9E-84 T 13-10-2018 IPR019922 Luciferase-like, F420-dependent oxidoreductase, MSMEG4141, predicted RAM_08590 a7adf0524fd7eb9e3204febc42703e03 274 Gene3D G3DSA:3.20.20.30 1 271 2.0E-28 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_08590 a7adf0524fd7eb9e3204febc42703e03 274 SUPERFAMILY SSF51679 1 271 1.77E-35 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_18530 aadccb8afe747ac18b6996f11156b1ea 162 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 40 48 - T 13-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RAM_18530 aadccb8afe747ac18b6996f11156b1ea 162 SUPERFAMILY SSF54292 3 79 4.19E-24 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RAM_18530 aadccb8afe747ac18b6996f11156b1ea 162 Pfam PF01799 [2Fe-2S] binding domain 74 157 6.2E-26 T 13-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RAM_18530 aadccb8afe747ac18b6996f11156b1ea 162 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 8 54 6.4E-7 T 13-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RAM_18530 aadccb8afe747ac18b6996f11156b1ea 162 Gene3D G3DSA:1.10.150.120 78 162 1.7E-29 T 13-10-2018 RAM_18530 aadccb8afe747ac18b6996f11156b1ea 162 SUPERFAMILY SSF47741 74 161 1.44E-24 T 13-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily RAM_18530 aadccb8afe747ac18b6996f11156b1ea 162 Gene3D G3DSA:3.10.20.30 1 77 1.2E-29 T 13-10-2018 IPR012675 Beta-grasp domain superfamily RAM_41365 642b6aa13ff62adcce536bcff9f942a2 983 SUPERFAMILY SSF52540 1 974 7.41E-35 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_41365 642b6aa13ff62adcce536bcff9f942a2 983 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 31 44 - T 13-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RAM_41365 642b6aa13ff62adcce536bcff9f942a2 983 Pfam PF13476 AAA domain 5 205 3.5E-25 T 13-10-2018 IPR038729 Rad50/SbcC-type AAA domain RAM_41365 642b6aa13ff62adcce536bcff9f942a2 983 Gene3D G3DSA:3.40.50.300 754 981 1.6E-24 T 13-10-2018 RAM_41365 642b6aa13ff62adcce536bcff9f942a2 983 Pfam PF13558 Putative exonuclease SbcCD, C subunit 879 941 4.5E-12 T 13-10-2018 RAM_41365 642b6aa13ff62adcce536bcff9f942a2 983 Gene3D G3DSA:3.40.50.300 1 284 8.8E-37 T 13-10-2018 RAM_08385 f81a978116e672afc0eb53ce97da3293 257 Pfam PF08241 Methyltransferase domain 49 140 5.8E-17 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 RAM_08385 f81a978116e672afc0eb53ce97da3293 257 SUPERFAMILY SSF53335 27 195 1.69E-31 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_08385 f81a978116e672afc0eb53ce97da3293 257 Gene3D G3DSA:3.40.50.150 22 197 1.5E-29 T 13-10-2018 RAM_04650 9ad9427ffd72a463ebd17f324d882c9b 580 Gene3D G3DSA:3.30.200.20 1 89 1.3E-26 T 13-10-2018 RAM_04650 9ad9427ffd72a463ebd17f324d882c9b 580 SMART SM00220 6 261 1.1E-60 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_04650 9ad9427ffd72a463ebd17f324d882c9b 580 Pfam PF00069 Protein kinase domain 7 258 9.7E-46 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_04650 9ad9427ffd72a463ebd17f324d882c9b 580 Gene3D G3DSA:1.10.510.10 93 267 8.1E-42 T 13-10-2018 RAM_04650 9ad9427ffd72a463ebd17f324d882c9b 580 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 12 35 - T 13-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 RAM_04650 9ad9427ffd72a463ebd17f324d882c9b 580 SUPERFAMILY SSF56112 2 270 1.21E-67 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_04650 9ad9427ffd72a463ebd17f324d882c9b 580 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 129 141 - T 13-10-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 RAM_23065 b75cdddad574561ad14bdbf0e87c1796 574 Gene3D G3DSA:3.40.50.970 1 170 5.3E-55 T 13-10-2018 RAM_23065 b75cdddad574561ad14bdbf0e87c1796 574 SUPERFAMILY SSF52518 354 540 2.44E-56 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_23065 b75cdddad574561ad14bdbf0e87c1796 574 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 1 165 1.3E-41 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RAM_23065 b75cdddad574561ad14bdbf0e87c1796 574 Gene3D G3DSA:3.40.50.1220 176 328 5.1E-43 T 13-10-2018 RAM_23065 b75cdddad574561ad14bdbf0e87c1796 574 SUPERFAMILY SSF52467 179 335 2.31E-40 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily RAM_23065 b75cdddad574561ad14bdbf0e87c1796 574 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 187 314 1.4E-28 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 RAM_23065 b75cdddad574561ad14bdbf0e87c1796 574 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 377 523 3.8E-35 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RAM_23065 b75cdddad574561ad14bdbf0e87c1796 574 SUPERFAMILY SSF52518 1 176 1.96E-42 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_23065 b75cdddad574561ad14bdbf0e87c1796 574 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 414 433 - T 13-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 RAM_23065 b75cdddad574561ad14bdbf0e87c1796 574 Gene3D G3DSA:3.40.50.970 347 570 2.6E-61 T 13-10-2018 RAM_18130 eee6a4731b88f3a771801005cd1f14da 254 Pfam PF00106 short chain dehydrogenase 7 191 1.7E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18130 eee6a4731b88f3a771801005cd1f14da 254 Gene3D G3DSA:3.40.50.720 3 244 1.4E-47 T 13-10-2018 RAM_18130 eee6a4731b88f3a771801005cd1f14da 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 1.2E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18130 eee6a4731b88f3a771801005cd1f14da 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 1.2E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18130 eee6a4731b88f3a771801005cd1f14da 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 1.2E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18130 eee6a4731b88f3a771801005cd1f14da 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.2E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18130 eee6a4731b88f3a771801005cd1f14da 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 1.2E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18130 eee6a4731b88f3a771801005cd1f14da 254 SUPERFAMILY SSF51735 1 196 4.12E-45 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_18130 eee6a4731b88f3a771801005cd1f14da 254 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_18630 583be74cc0d8866baf767887f6dcbd07 204 SUPERFAMILY SSF88946 15 105 2.08E-21 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_18630 583be74cc0d8866baf767887f6dcbd07 204 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 31 189 4.7E-21 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_18630 583be74cc0d8866baf767887f6dcbd07 204 SUPERFAMILY SSF88659 127 192 7.66E-12 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_18630 583be74cc0d8866baf767887f6dcbd07 204 Pfam PF08281 Sigma-70, region 4 136 187 5.3E-12 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_18630 583be74cc0d8866baf767887f6dcbd07 204 Gene3D G3DSA:1.10.10.10 113 195 5.0E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_18630 583be74cc0d8866baf767887f6dcbd07 204 Pfam PF04542 Sigma-70 region 2 35 103 8.3E-13 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_18630 583be74cc0d8866baf767887f6dcbd07 204 Gene3D G3DSA:1.10.1740.10 12 101 9.0E-19 T 13-10-2018 RAM_15465 035d2d8f44ad06e5625aa28c710d26d3 320 Gene3D G3DSA:3.30.390.50 213 316 9.8E-26 T 13-10-2018 RAM_15465 035d2d8f44ad06e5625aa28c710d26d3 320 Gene3D G3DSA:3.30.465.10 1 210 3.8E-69 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 RAM_15465 035d2d8f44ad06e5625aa28c710d26d3 320 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 4 209 8.9E-40 T 13-10-2018 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 RAM_15465 035d2d8f44ad06e5625aa28c710d26d3 320 SMART SM01092 216 314 3.6E-29 T 13-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal RAM_15465 035d2d8f44ad06e5625aa28c710d26d3 320 SUPERFAMILY SSF56176 1 209 2.56E-53 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RAM_15465 035d2d8f44ad06e5625aa28c710d26d3 320 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 217 313 2.2E-17 T 13-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal RAM_15465 035d2d8f44ad06e5625aa28c710d26d3 320 SUPERFAMILY SSF55447 216 315 2.09E-28 T 13-10-2018 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily RAM_22575 1adc45f0d027154d644f35acccd4ba8f 377 Gene3D G3DSA:3.30.360.10 138 274 4.7E-21 T 13-10-2018 RAM_22575 1adc45f0d027154d644f35acccd4ba8f 377 Gene3D G3DSA:3.40.50.720 2 137 1.1E-20 T 13-10-2018 RAM_22575 1adc45f0d027154d644f35acccd4ba8f 377 SUPERFAMILY SSF51735 6 151 3.34E-25 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_22575 1adc45f0d027154d644f35acccd4ba8f 377 SUPERFAMILY SSF55347 133 277 1.85E-13 T 13-10-2018 RAM_22575 1adc45f0d027154d644f35acccd4ba8f 377 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 120 2.3E-13 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 RAM_39000 7844ec0101e3d50524f38c20c20fb6c3 540 Gene3D G3DSA:3.40.720.10 44 243 1.0E-56 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 RAM_39000 7844ec0101e3d50524f38c20c20fb6c3 540 Gene3D G3DSA:3.40.720.10 360 540 4.5E-53 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 RAM_39000 7844ec0101e3d50524f38c20c20fb6c3 540 Pfam PF04185 Phosphoesterase family 54 497 4.5E-84 T 13-10-2018 IPR007312 Phosphoesterase GO:0016788 RAM_24900 b9162422556df865b44a0a4923a91c83 411 Pfam PF00756 Putative esterase 170 303 2.9E-15 T 13-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 RAM_24900 b9162422556df865b44a0a4923a91c83 411 SUPERFAMILY SSF53474 170 402 2.05E-31 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_24900 b9162422556df865b44a0a4923a91c83 411 Gene3D G3DSA:3.40.50.1820 145 402 4.7E-43 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_45935 4dbb0a45868f113f87fd5b5a313c8911 141 SUPERFAMILY SSF54427 1 116 6.51E-28 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_45935 4dbb0a45868f113f87fd5b5a313c8911 141 Gene3D G3DSA:3.10.450.50 1 131 5.6E-33 T 13-10-2018 RAM_45935 4dbb0a45868f113f87fd5b5a313c8911 141 Pfam PF07858 Limonene-1,2-epoxide hydrolase catalytic domain 1 115 8.9E-33 T 13-10-2018 IPR013100 Limonene-1,2-epoxide hydrolase RAM_43830 94020911c530c40a754b32bece6b6fda 549 SMART SM00944 42 185 2.6E-46 T 13-10-2018 IPR015366 Peptidase S53, activation domain GO:0008236 Reactome: R-HSA-381038 RAM_43830 94020911c530c40a754b32bece6b6fda 549 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 465 475 - T 13-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site RAM_43830 94020911c530c40a754b32bece6b6fda 549 SUPERFAMILY SSF54897 44 188 1.02E-38 T 13-10-2018 RAM_43830 94020911c530c40a754b32bece6b6fda 549 Gene3D G3DSA:3.40.50.200 199 548 3.6E-90 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RAM_43830 94020911c530c40a754b32bece6b6fda 549 Pfam PF09286 Pro-kumamolisin, activation domain 46 184 3.1E-30 T 13-10-2018 IPR015366 Peptidase S53, activation domain GO:0008236 Reactome: R-HSA-381038 RAM_43830 94020911c530c40a754b32bece6b6fda 549 SUPERFAMILY SSF52743 203 540 1.09E-51 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RAM_42110 8795e52cb0a24a0cab34ae09a55077fc 428 PRINTS PR00148 Enolase signature 332 346 5.0E-49 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RAM_42110 8795e52cb0a24a0cab34ae09a55077fc 428 PRINTS PR00148 Enolase signature 161 174 5.0E-49 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RAM_42110 8795e52cb0a24a0cab34ae09a55077fc 428 PRINTS PR00148 Enolase signature 361 378 5.0E-49 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RAM_42110 8795e52cb0a24a0cab34ae09a55077fc 428 PRINTS PR00148 Enolase signature 309 320 5.0E-49 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RAM_42110 8795e52cb0a24a0cab34ae09a55077fc 428 PRINTS PR00148 Enolase signature 37 51 5.0E-49 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RAM_42110 8795e52cb0a24a0cab34ae09a55077fc 428 PRINTS PR00148 Enolase signature 107 123 5.0E-49 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RAM_42110 8795e52cb0a24a0cab34ae09a55077fc 428 SMART SM01193 4 134 9.7E-84 T 13-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RAM_42110 8795e52cb0a24a0cab34ae09a55077fc 428 SUPERFAMILY SSF54826 4 136 8.05E-51 T 13-10-2018 RAM_42110 8795e52cb0a24a0cab34ae09a55077fc 428 ProSitePatterns PS00164 Enolase signature. 332 345 - T 13-10-2018 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RAM_42110 8795e52cb0a24a0cab34ae09a55077fc 428 SMART SM01192 139 423 3.5E-215 T 13-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RAM_42110 8795e52cb0a24a0cab34ae09a55077fc 428 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 422 5.0E-204 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RAM_42110 8795e52cb0a24a0cab34ae09a55077fc 428 SUPERFAMILY SSF51604 138 420 6.93E-128 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RAM_42110 8795e52cb0a24a0cab34ae09a55077fc 428 PIRSF PIRSF001400 1 422 3.6E-191 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RAM_42110 8795e52cb0a24a0cab34ae09a55077fc 428 Gene3D G3DSA:3.30.390.10 1 126 4.2E-52 T 13-10-2018 IPR029017 Enolase-like, N-terminal RAM_42110 8795e52cb0a24a0cab34ae09a55077fc 428 Pfam PF03952 Enolase, N-terminal domain 4 134 6.4E-56 T 13-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RAM_42110 8795e52cb0a24a0cab34ae09a55077fc 428 Hamap MF_00318 Enolase [eno]. 2 409 45.57 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RAM_42110 8795e52cb0a24a0cab34ae09a55077fc 428 Gene3D G3DSA:3.20.20.120 128 424 1.2E-133 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RAM_42110 8795e52cb0a24a0cab34ae09a55077fc 428 Pfam PF00113 Enolase, C-terminal TIM barrel domain 140 418 3.5E-129 T 13-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RAM_25495 18577242013033ea8d925da0219da0be 147 SMART SM00347 29 130 1.4E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_25495 18577242013033ea8d925da0219da0be 147 Gene3D G3DSA:1.10.10.10 11 146 7.7E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_25495 18577242013033ea8d925da0219da0be 147 ProSitePatterns PS01117 MarR-type HTH domain signature. 67 102 - T 13-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site RAM_25495 18577242013033ea8d925da0219da0be 147 SUPERFAMILY SSF46785 12 146 1.3E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_25495 18577242013033ea8d925da0219da0be 147 Pfam PF01047 MarR family 37 94 3.4E-9 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_33225 952e9ca37beceeae3882cf1c71900e30 445 SUPERFAMILY SSF103473 17 429 2.62E-66 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_33225 952e9ca37beceeae3882cf1c71900e30 445 Pfam PF07690 Major Facilitator Superfamily 296 429 5.9E-12 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_33225 952e9ca37beceeae3882cf1c71900e30 445 Gene3D G3DSA:1.20.1250.20 22 439 2.1E-63 T 13-10-2018 RAM_33225 952e9ca37beceeae3882cf1c71900e30 445 Pfam PF00083 Sugar (and other) transporter 26 235 5.3E-27 T 13-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 RAM_39220 9fb2becc43138d8f3bc39b701dc2942f 248 Pfam PF12697 Alpha/beta hydrolase family 1 237 5.7E-13 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_39220 9fb2becc43138d8f3bc39b701dc2942f 248 Gene3D G3DSA:3.40.50.1820 1 244 5.7E-24 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_39220 9fb2becc43138d8f3bc39b701dc2942f 248 PRINTS PR00412 Epoxide hydrolase signature 65 78 2.0E-5 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_39220 9fb2becc43138d8f3bc39b701dc2942f 248 PRINTS PR00412 Epoxide hydrolase signature 220 242 2.0E-5 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_39220 9fb2becc43138d8f3bc39b701dc2942f 248 PRINTS PR00412 Epoxide hydrolase signature 79 92 2.0E-5 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_39220 9fb2becc43138d8f3bc39b701dc2942f 248 PRINTS PR00412 Epoxide hydrolase signature 4 22 2.0E-5 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_39220 9fb2becc43138d8f3bc39b701dc2942f 248 SUPERFAMILY SSF53474 1 245 4.05E-24 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_13780 4f6774cb5432e0c1f446c77913af5e86 271 SUPERFAMILY SSF48179 146 267 4.08E-25 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RAM_13780 4f6774cb5432e0c1f446c77913af5e86 271 SUPERFAMILY SSF51735 1 146 2.22E-30 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_13780 4f6774cb5432e0c1f446c77913af5e86 271 PIRSF PIRSF000103 1 271 4.7E-66 T 13-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 RAM_13780 4f6774cb5432e0c1f446c77913af5e86 271 Gene3D G3DSA:3.40.50.720 1 144 1.0E-33 T 13-10-2018 RAM_13780 4f6774cb5432e0c1f446c77913af5e86 271 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 1 145 1.9E-30 T 13-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 RAM_13780 4f6774cb5432e0c1f446c77913af5e86 271 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 148 266 9.0E-15 T 13-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 RAM_13780 4f6774cb5432e0c1f446c77913af5e86 271 Gene3D G3DSA:1.10.1040.10 145 270 1.6E-27 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RAM_46555 a2c8df6b19f0aba8972dcfcb6fa1d633 272 Pfam PF04672 S-adenosyl methyltransferase 6 270 1.4E-69 T 13-10-2018 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type RAM_46555 a2c8df6b19f0aba8972dcfcb6fa1d633 272 PIRSF PIRSF017393 1 271 7.8E-76 T 13-10-2018 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type RAM_46555 a2c8df6b19f0aba8972dcfcb6fa1d633 272 SUPERFAMILY SSF53335 12 256 5.32E-27 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_46555 a2c8df6b19f0aba8972dcfcb6fa1d633 272 Gene3D G3DSA:3.40.50.150 1 271 3.8E-83 T 13-10-2018 RAM_46605 3ee2ed4e20075d7d22865af64689c12e 378 Gene3D G3DSA:3.20.20.190 45 373 3.9E-106 T 13-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 RAM_46605 3ee2ed4e20075d7d22865af64689c12e 378 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 52 367 6.5E-44 T 13-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 RAM_46605 3ee2ed4e20075d7d22865af64689c12e 378 SUPERFAMILY SSF51695 47 371 1.96E-71 T 13-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 RAM_42695 269d91fdd2b521050172c47341b23fc6 99 TIGRFAM TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family 2 51 2.9E-20 T 13-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain RAM_42695 269d91fdd2b521050172c47341b23fc6 99 Pfam PF09723 Zinc ribbon domain 2 40 3.7E-15 T 13-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain RAM_42695 269d91fdd2b521050172c47341b23fc6 99 SMART SM00834 2 41 1.5E-14 T 13-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain RAM_37225 59ab38d1a4831bd0d5b5ac8d5d5994d3 424 Gene3D G3DSA:1.20.1250.20 1 415 4.2E-59 T 13-10-2018 RAM_37225 59ab38d1a4831bd0d5b5ac8d5d5994d3 424 Pfam PF07690 Major Facilitator Superfamily 33 343 1.5E-25 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_37225 59ab38d1a4831bd0d5b5ac8d5d5994d3 424 SUPERFAMILY SSF103473 2 403 8.5E-58 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_44845 4e96795965d76fb4c565ab26a2b9d4b8 367 Pfam PF13367 Protease prsW family 58 254 2.8E-53 T 13-10-2018 IPR026898 Protease PrsW GO:0008233 RAM_07530 b2de86556a1a062a47e9f3c828cd1d46 202 SUPERFAMILY SSF141571 23 199 7.46E-42 T 13-10-2018 RAM_07530 b2de86556a1a062a47e9f3c828cd1d46 202 Pfam PF13599 Pentapeptide repeats (9 copies) 66 125 2.6E-10 T 13-10-2018 IPR001646 Pentapeptide repeat RAM_07530 b2de86556a1a062a47e9f3c828cd1d46 202 Pfam PF00805 Pentapeptide repeats (8 copies) 32 60 0.0028 T 13-10-2018 IPR001646 Pentapeptide repeat RAM_07530 b2de86556a1a062a47e9f3c828cd1d46 202 Pfam PF00805 Pentapeptide repeats (8 copies) 132 170 8.8E-8 T 13-10-2018 IPR001646 Pentapeptide repeat RAM_07530 b2de86556a1a062a47e9f3c828cd1d46 202 Gene3D G3DSA:2.160.20.100 20 202 4.4E-49 T 13-10-2018 RAM_33880 5ba0766043724ef2770481839712879a 302 SMART SM00382 31 207 7.1E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_33880 5ba0766043724ef2770481839712879a 302 Gene3D G3DSA:3.40.50.300 2 228 1.3E-62 T 13-10-2018 RAM_33880 5ba0766043724ef2770481839712879a 302 Pfam PF00005 ABC transporter 23 159 4.3E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_33880 5ba0766043724ef2770481839712879a 302 SUPERFAMILY SSF52540 5 222 1.31E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_33880 5ba0766043724ef2770481839712879a 302 ProSitePatterns PS00211 ABC transporters family signature. 131 145 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_44580 624d5b9f57ae60483ff3e0c3153d6812 201 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 9 18 - T 13-10-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824 RAM_44580 624d5b9f57ae60483ff3e0c3153d6812 201 Gene3D G3DSA:3.40.50.1240 2 191 1.6E-31 T 13-10-2018 IPR029033 Histidine phosphatase superfamily RAM_44580 624d5b9f57ae60483ff3e0c3153d6812 201 SUPERFAMILY SSF53254 3 188 3.53E-25 T 13-10-2018 IPR029033 Histidine phosphatase superfamily RAM_44580 624d5b9f57ae60483ff3e0c3153d6812 201 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 7 177 3.1E-20 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 RAM_31465 21c2d925a39e6fd77251101c3d52545e 146 SUPERFAMILY SSF54637 26 143 2.04E-25 T 13-10-2018 IPR029069 HotDog domain superfamily RAM_31465 21c2d925a39e6fd77251101c3d52545e 146 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 28 139 3.7E-26 T 13-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 RAM_31465 21c2d925a39e6fd77251101c3d52545e 146 Pfam PF03061 Thioesterase superfamily 54 130 1.5E-12 T 13-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 RAM_31465 21c2d925a39e6fd77251101c3d52545e 146 Gene3D G3DSA:3.10.129.10 2 143 5.1E-42 T 13-10-2018 RAM_30975 3bcccb2455b2cf9b8f5b12c7dc4fcb2d 404 PIRSF PIRSF000521 28 134 7.9E-9 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RAM_30975 3bcccb2455b2cf9b8f5b12c7dc4fcb2d 404 PIRSF PIRSF000521 170 399 7.0E-28 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RAM_30975 3bcccb2455b2cf9b8f5b12c7dc4fcb2d 404 PIRSF PIRSF000521 130 164 0.11 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RAM_30975 3bcccb2455b2cf9b8f5b12c7dc4fcb2d 404 SUPERFAMILY SSF53383 15 397 2.78E-120 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_30975 3bcccb2455b2cf9b8f5b12c7dc4fcb2d 404 Gene3D G3DSA:3.90.1150.10 32 389 6.8E-134 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_30975 3bcccb2455b2cf9b8f5b12c7dc4fcb2d 404 Pfam PF00202 Aminotransferase class-III 31 395 5.0E-103 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RAM_30975 3bcccb2455b2cf9b8f5b12c7dc4fcb2d 404 Gene3D G3DSA:3.40.640.10 65 306 6.8E-134 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_30975 3bcccb2455b2cf9b8f5b12c7dc4fcb2d 404 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 21 399 66.223 T 13-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 RAM_30975 3bcccb2455b2cf9b8f5b12c7dc4fcb2d 404 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 22 396 8.1E-139 T 13-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 RAM_30975 3bcccb2455b2cf9b8f5b12c7dc4fcb2d 404 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 224 261 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RAM_23580 93a1de74f0b3dfcf4e0c2ee9ca9b6405 245 SUPERFAMILY SSF55961 7 134 1.97E-15 T 13-10-2018 RAM_23580 93a1de74f0b3dfcf4e0c2ee9ca9b6405 245 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 5 117 3.2E-6 T 13-10-2018 IPR019587 Polyketide cyclase/dehydrase RAM_23580 93a1de74f0b3dfcf4e0c2ee9ca9b6405 245 Gene3D G3DSA:3.30.530.20 6 142 1.6E-14 T 13-10-2018 IPR023393 START-like domain superfamily RAM_28105 927887aa0ad579c2b2232a8f07dbe15c 311 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 67 83 4.0E-19 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RAM_28105 927887aa0ad579c2b2232a8f07dbe15c 311 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 205 224 4.0E-19 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RAM_28105 927887aa0ad579c2b2232a8f07dbe15c 311 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 155 167 4.0E-19 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RAM_28105 927887aa0ad579c2b2232a8f07dbe15c 311 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 53 250 1.6E-39 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RAM_28105 927887aa0ad579c2b2232a8f07dbe15c 311 ProSitePatterns PS00761 Signal peptidases I signature 3. 210 223 - T 13-10-2018 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 RAM_28105 927887aa0ad579c2b2232a8f07dbe15c 311 SUPERFAMILY SSF51306 66 257 1.94E-44 T 13-10-2018 IPR036286 LexA/Signal peptidase-like superfamily RAM_28105 927887aa0ad579c2b2232a8f07dbe15c 311 Gene3D G3DSA:2.10.109.10 63 187 6.3E-12 T 13-10-2018 RAM_28105 927887aa0ad579c2b2232a8f07dbe15c 311 Gene3D G3DSA:2.10.109.10 192 262 2.8E-12 T 13-10-2018 RAM_28105 927887aa0ad579c2b2232a8f07dbe15c 311 Pfam PF10502 Signal peptidase, peptidase S26 148 248 7.5E-9 T 13-10-2018 IPR019533 Peptidase S26 RAM_28105 927887aa0ad579c2b2232a8f07dbe15c 311 Pfam PF00717 Peptidase S24-like 74 120 1.5E-6 T 13-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C RAM_13320 9a99780f138a5246a5eafc2e827eeda0 547 Gene3D G3DSA:3.40.50.970 367 538 1.9E-32 T 13-10-2018 RAM_13320 9a99780f138a5246a5eafc2e827eeda0 547 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 181 2.5E-39 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RAM_13320 9a99780f138a5246a5eafc2e827eeda0 547 Gene3D G3DSA:3.40.50.970 1 188 8.1E-40 T 13-10-2018 RAM_13320 9a99780f138a5246a5eafc2e827eeda0 547 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 397 531 5.6E-23 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RAM_13320 9a99780f138a5246a5eafc2e827eeda0 547 Gene3D G3DSA:3.40.50.1220 196 363 2.7E-38 T 13-10-2018 RAM_13320 9a99780f138a5246a5eafc2e827eeda0 547 SUPERFAMILY SSF52518 2 188 3.04E-35 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_13320 9a99780f138a5246a5eafc2e827eeda0 547 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 204 334 2.8E-29 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 RAM_13320 9a99780f138a5246a5eafc2e827eeda0 547 SUPERFAMILY SSF52467 167 348 2.7E-34 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily RAM_13320 9a99780f138a5246a5eafc2e827eeda0 547 SUPERFAMILY SSF52518 373 534 4.95E-31 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_06210 3291a6de41b94d8b1f9e5478d00857fa 248 Gene3D G3DSA:3.40.50.880 1 230 7.3E-56 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_06210 3291a6de41b94d8b1f9e5478d00857fa 248 SUPERFAMILY SSF52317 27 189 2.37E-38 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_06210 3291a6de41b94d8b1f9e5478d00857fa 248 Pfam PF00117 Glutamine amidotransferase class-I 23 183 1.0E-15 T 13-10-2018 IPR017926 Glutamine amidotransferase RAM_12150 b88bc89aa05f74ef8d27e425b472ec3b 167 SUPERFAMILY SSF46785 15 85 2.73E-11 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_12150 b88bc89aa05f74ef8d27e425b472ec3b 167 Gene3D G3DSA:1.10.10.10 3 84 1.3E-14 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_12150 b88bc89aa05f74ef8d27e425b472ec3b 167 Pfam PF12840 Helix-turn-helix domain 14 70 1.3E-7 T 13-10-2018 RAM_24010 9884921dd3825a47eaffb50b6df781b6 187 SUPERFAMILY SSF47413 5 73 1.8E-15 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_24010 9884921dd3825a47eaffb50b6df781b6 187 Gene3D G3DSA:2.60.120.10 79 185 3.8E-8 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_24010 9884921dd3825a47eaffb50b6df781b6 187 Gene3D G3DSA:1.10.260.40 3 78 1.4E-16 T 13-10-2018 RAM_24010 9884921dd3825a47eaffb50b6df781b6 187 SUPERFAMILY SSF51182 53 181 1.87E-18 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RAM_24010 9884921dd3825a47eaffb50b6df781b6 187 SMART SM00530 12 67 6.5E-14 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_24010 9884921dd3825a47eaffb50b6df781b6 187 Pfam PF01381 Helix-turn-helix 15 67 6.4E-14 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_42665 f4ed7b3653d41ebe01b880975c4ecc61 1567 Pfam PF00270 DEAD/DEAH box helicase 95 295 3.5E-20 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RAM_42665 f4ed7b3653d41ebe01b880975c4ecc61 1567 SMART SM00487 88 331 2.0E-26 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RAM_42665 f4ed7b3653d41ebe01b880975c4ecc61 1567 SUPERFAMILY SSF52540 92 301 3.46E-32 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_42665 f4ed7b3653d41ebe01b880975c4ecc61 1567 Pfam PF09369 Domain of unknown function (DUF1998) 1450 1527 2.4E-10 T 13-10-2018 IPR018973 DEAD/DEAH-box helicase, putative RAM_42665 f4ed7b3653d41ebe01b880975c4ecc61 1567 Gene3D G3DSA:3.40.50.300 78 311 1.1E-40 T 13-10-2018 RAM_42665 f4ed7b3653d41ebe01b880975c4ecc61 1567 Gene3D G3DSA:3.40.50.300 933 1054 3.0E-16 T 13-10-2018 RAM_42665 f4ed7b3653d41ebe01b880975c4ecc61 1567 Pfam PF00271 Helicase conserved C-terminal domain 958 1019 8.2E-9 T 13-10-2018 IPR001650 Helicase, C-terminal RAM_42665 f4ed7b3653d41ebe01b880975c4ecc61 1567 SMART SM00490 939 1020 2.2E-9 T 13-10-2018 IPR001650 Helicase, C-terminal RAM_42665 f4ed7b3653d41ebe01b880975c4ecc61 1567 SUPERFAMILY SSF52540 106 1067 1.1E-28 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_01030 0cbfe4bff7f7534b27c7c17e34943d39 208 Gene3D G3DSA:2.160.10.10 4 173 1.0E-36 T 13-10-2018 RAM_01030 0cbfe4bff7f7534b27c7c17e34943d39 208 SUPERFAMILY SSF51161 40 172 2.91E-35 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily RAM_01030 0cbfe4bff7f7534b27c7c17e34943d39 208 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 113 147 1.4E-8 T 13-10-2018 IPR001451 Hexapeptide repeat RAM_22715 0dc5536d521ffeb7708b1d20eec429ef 345 Pfam PF00107 Zinc-binding dehydrogenase 167 276 3.2E-18 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RAM_22715 0dc5536d521ffeb7708b1d20eec429ef 345 Gene3D G3DSA:3.40.50.720 128 310 1.9E-75 T 13-10-2018 RAM_22715 0dc5536d521ffeb7708b1d20eec429ef 345 Gene3D G3DSA:3.90.180.10 8 337 1.9E-75 T 13-10-2018 RAM_22715 0dc5536d521ffeb7708b1d20eec429ef 345 SUPERFAMILY SSF51735 122 297 7.93E-29 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_22715 0dc5536d521ffeb7708b1d20eec429ef 345 SMART SM00829 10 339 2.6E-12 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_22715 0dc5536d521ffeb7708b1d20eec429ef 345 SUPERFAMILY SSF50129 1 142 1.19E-33 T 13-10-2018 IPR011032 GroES-like superfamily RAM_22715 0dc5536d521ffeb7708b1d20eec429ef 345 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 27 89 2.6E-5 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_32445 2507b1d6ec714c7af6a3fd730638f364 440 PIRSF PIRSF006603 5 439 3.6E-50 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RAM_32445 2507b1d6ec714c7af6a3fd730638f364 440 TIGRFAM TIGR00797 matE: MATE efflux family protein 21 408 5.9E-91 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RAM_32445 2507b1d6ec714c7af6a3fd730638f364 440 Pfam PF01554 MatE 21 181 6.1E-25 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RAM_32445 2507b1d6ec714c7af6a3fd730638f364 440 Pfam PF01554 MatE 238 389 1.6E-15 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RAM_09320 e84918be3709cd7b20106019816c461b 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 1.2E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_09320 e84918be3709cd7b20106019816c461b 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 1.2E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_09320 e84918be3709cd7b20106019816c461b 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 1.2E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_09320 e84918be3709cd7b20106019816c461b 261 Gene3D G3DSA:3.40.50.720 2 252 4.3E-80 T 13-10-2018 RAM_09320 e84918be3709cd7b20106019816c461b 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 3.0E-38 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_09320 e84918be3709cd7b20106019816c461b 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 3.0E-38 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_09320 e84918be3709cd7b20106019816c461b 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 213 233 3.0E-38 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_09320 e84918be3709cd7b20106019816c461b 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 3.0E-38 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_09320 e84918be3709cd7b20106019816c461b 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 3.0E-38 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_09320 e84918be3709cd7b20106019816c461b 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 3.0E-38 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_09320 e84918be3709cd7b20106019816c461b 261 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_09320 e84918be3709cd7b20106019816c461b 261 SUPERFAMILY SSF51735 6 250 3.59E-76 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_09320 e84918be3709cd7b20106019816c461b 261 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 249 2.4E-66 T 13-10-2018 RAM_22160 f7557954a7723dc9e66cdde3284510d9 365 SUPERFAMILY SSF53474 57 349 3.11E-24 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_22160 f7557954a7723dc9e66cdde3284510d9 365 Pfam PF12146 Serine aminopeptidase, S33 99 192 2.4E-9 T 13-10-2018 IPR022742 Serine aminopeptidase, S33 RAM_22160 f7557954a7723dc9e66cdde3284510d9 365 Gene3D G3DSA:3.40.50.1820 55 353 2.0E-26 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_19635 482a511ff9a0499a161fe43ca68ac9e1 382 PIRSF PIRSF000429 1 382 1.2E-122 T 13-10-2018 IPR002155 Thiolase GO:0016747 RAM_19635 482a511ff9a0499a161fe43ca68ac9e1 382 ProSitePatterns PS00737 Thiolases signature 2. 327 343 - T 13-10-2018 IPR020613 Thiolase, conserved site GO:0016747 RAM_19635 482a511ff9a0499a161fe43ca68ac9e1 382 Gene3D G3DSA:3.40.47.10 6 264 4.2E-139 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_19635 482a511ff9a0499a161fe43ca68ac9e1 382 SUPERFAMILY SSF53901 3 258 1.43E-74 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_19635 482a511ff9a0499a161fe43ca68ac9e1 382 Gene3D G3DSA:3.40.47.10 127 378 4.2E-139 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_19635 482a511ff9a0499a161fe43ca68ac9e1 382 Pfam PF00108 Thiolase, N-terminal domain 5 250 8.4E-70 T 13-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 RAM_19635 482a511ff9a0499a161fe43ca68ac9e1 382 SUPERFAMILY SSF53901 259 380 2.14E-38 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_19635 482a511ff9a0499a161fe43ca68ac9e1 382 Pfam PF02803 Thiolase, C-terminal domain 259 379 1.7E-39 T 13-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 RAM_19635 482a511ff9a0499a161fe43ca68ac9e1 382 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 379 1.2E-132 T 13-10-2018 IPR002155 Thiolase GO:0016747 RAM_00755 9507edeb8ad73545683e063c86f478a0 394 Gene3D G3DSA:1.10.3930.10 63 144 2.7E-140 T 13-10-2018 RAM_00755 9507edeb8ad73545683e063c86f478a0 394 PIRSF PIRSF006356 1 394 1.1E-132 T 13-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 RAM_00755 9507edeb8ad73545683e063c86f478a0 394 Gene3D G3DSA:3.75.10.10 1 391 2.7E-140 T 13-10-2018 RAM_00755 9507edeb8ad73545683e063c86f478a0 394 SUPERFAMILY SSF55909 1 394 5.89E-113 T 13-10-2018 RAM_00755 9507edeb8ad73545683e063c86f478a0 394 Hamap MF_00242 Arginine deiminase [arcA]. 1 394 40.372 T 13-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 RAM_00755 9507edeb8ad73545683e063c86f478a0 394 Pfam PF02274 Amidinotransferase 13 391 3.5E-95 T 13-10-2018 RAM_00755 9507edeb8ad73545683e063c86f478a0 394 PRINTS PR01466 Bacterial arginine deiminase signature 145 163 8.0E-38 T 13-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 RAM_00755 9507edeb8ad73545683e063c86f478a0 394 PRINTS PR01466 Bacterial arginine deiminase signature 350 364 8.0E-38 T 13-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 RAM_00755 9507edeb8ad73545683e063c86f478a0 394 PRINTS PR01466 Bacterial arginine deiminase signature 173 188 8.0E-38 T 13-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 RAM_00755 9507edeb8ad73545683e063c86f478a0 394 PRINTS PR01466 Bacterial arginine deiminase signature 330 347 8.0E-38 T 13-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 RAM_00755 9507edeb8ad73545683e063c86f478a0 394 PRINTS PR01466 Bacterial arginine deiminase signature 373 391 8.0E-38 T 13-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 RAM_19995 51e24d73c7a685aff15868665c131bb1 443 Pfam PF00652 Ricin-type beta-trefoil lectin domain 315 440 3.5E-26 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_19995 51e24d73c7a685aff15868665c131bb1 443 SMART SM00458 315 443 1.7E-22 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_19995 51e24d73c7a685aff15868665c131bb1 443 Gene3D G3DSA:3.40.50.1820 37 304 7.1E-61 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_19995 51e24d73c7a685aff15868665c131bb1 443 SUPERFAMILY SSF53474 67 287 3.22E-34 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_19995 51e24d73c7a685aff15868665c131bb1 443 Gene3D G3DSA:2.80.10.50 318 442 7.2E-34 T 13-10-2018 RAM_19995 51e24d73c7a685aff15868665c131bb1 443 SUPERFAMILY SSF50370 313 442 1.0E-32 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_19995 51e24d73c7a685aff15868665c131bb1 443 Pfam PF01738 Dienelactone hydrolase family 144 253 4.8E-5 T 13-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 RAM_15650 a23221c39ba2b4b9e00dfbcf52371194 298 Pfam PF00248 Aldo/keto reductase family 17 288 5.5E-43 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain RAM_15650 a23221c39ba2b4b9e00dfbcf52371194 298 PRINTS PR00069 Aldo-keto reductase signature 222 246 1.2E-9 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_15650 a23221c39ba2b4b9e00dfbcf52371194 298 PRINTS PR00069 Aldo-keto reductase signature 148 165 1.2E-9 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_15650 a23221c39ba2b4b9e00dfbcf52371194 298 PRINTS PR00069 Aldo-keto reductase signature 41 65 1.2E-9 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_15650 a23221c39ba2b4b9e00dfbcf52371194 298 Gene3D G3DSA:3.20.20.100 8 296 1.3E-60 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_15650 a23221c39ba2b4b9e00dfbcf52371194 298 SUPERFAMILY SSF51430 11 288 1.13E-57 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_24095 7d2b5b55d795be249c36cbf256fbeeb3 531 Pfam PF07969 Amidohydrolase family 49 526 9.2E-85 T 13-10-2018 IPR013108 Amidohydrolase 3 RAM_24095 7d2b5b55d795be249c36cbf256fbeeb3 531 SUPERFAMILY SSF51556 60 459 5.53E-32 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_24095 7d2b5b55d795be249c36cbf256fbeeb3 531 Gene3D G3DSA:2.30.40.10 12 477 2.0E-89 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_24095 7d2b5b55d795be249c36cbf256fbeeb3 531 SUPERFAMILY SSF51338 6 78 8.31E-14 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_24095 7d2b5b55d795be249c36cbf256fbeeb3 531 Gene3D G3DSA:3.10.310.70 79 185 2.0E-89 T 13-10-2018 RAM_24095 7d2b5b55d795be249c36cbf256fbeeb3 531 Gene3D G3DSA:3.20.20.140 61 463 2.0E-89 T 13-10-2018 RAM_07445 c41cf7ab73818279d412fa1cbb5a2009 372 Gene3D G3DSA:1.10.150.130 55 159 2.4E-17 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal RAM_07445 c41cf7ab73818279d412fa1cbb5a2009 372 Pfam PF00589 Phage integrase family 195 339 1.2E-5 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RAM_07445 c41cf7ab73818279d412fa1cbb5a2009 372 SUPERFAMILY SSF56349 60 341 4.12E-34 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RAM_07445 c41cf7ab73818279d412fa1cbb5a2009 372 Gene3D G3DSA:1.10.443.10 172 342 6.4E-22 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 RAM_08315 8d150987e22cb7eb2d51614727be93c2 474 PIRSF PIRSF019251 1 473 2.6E-193 T 13-10-2018 IPR026281 HTH-type transcriptional regulator RamB GO:0006355 RAM_08315 8d150987e22cb7eb2d51614727be93c2 474 SUPERFAMILY SSF47413 4 67 4.79E-15 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_08315 8d150987e22cb7eb2d51614727be93c2 474 Pfam PF09856 Predicted transcriptional regulator (DUF2083) 312 468 3.8E-71 T 13-10-2018 IPR018653 Domain of unknown function DUF2083,transcriptional regulator RAM_08315 8d150987e22cb7eb2d51614727be93c2 474 Pfam PF13560 Helix-turn-helix domain 7 61 6.8E-12 T 13-10-2018 RAM_08315 8d150987e22cb7eb2d51614727be93c2 474 Pfam PF06114 IrrE N-terminal-like domain 188 311 5.0E-18 T 13-10-2018 IPR010359 IrrE N-terminal-like domain RAM_08315 8d150987e22cb7eb2d51614727be93c2 474 Gene3D G3DSA:1.10.260.40 4 86 8.7E-15 T 13-10-2018 RAM_08315 8d150987e22cb7eb2d51614727be93c2 474 SMART SM00530 9 64 5.7E-14 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_39295 c5bf4262c2217c12422e8b652fd4b030 163 SUPERFAMILY SSF55961 12 162 3.73E-20 T 13-10-2018 RAM_39295 c5bf4262c2217c12422e8b652fd4b030 163 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 14 160 9.9E-14 T 13-10-2018 IPR019587 Polyketide cyclase/dehydrase RAM_39295 c5bf4262c2217c12422e8b652fd4b030 163 Gene3D G3DSA:3.30.530.20 12 163 2.6E-37 T 13-10-2018 IPR023393 START-like domain superfamily RAM_07150 732484ac48a2fe98f8cc971ddc60e99c 405 Gene3D G3DSA:2.40.440.10 240 388 6.0E-88 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like RAM_07150 732484ac48a2fe98f8cc971ddc60e99c 405 Gene3D G3DSA:2.60.40.3780 45 139 7.6E-22 T 13-10-2018 RAM_07150 732484ac48a2fe98f8cc971ddc60e99c 405 SUPERFAMILY SSF141523 240 373 1.57E-21 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like RAM_07150 732484ac48a2fe98f8cc971ddc60e99c 405 Pfam PF03734 L,D-transpeptidase catalytic domain 250 373 1.9E-10 T 13-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 RAM_07150 732484ac48a2fe98f8cc971ddc60e99c 405 Gene3D G3DSA:2.60.40.3710 152 400 6.0E-88 T 13-10-2018 RAM_17530 feefa84c8dced3078d0050ba426c4c8a 325 SUPERFAMILY SSF64167 38 320 1.12E-31 T 13-10-2018 RAM_17530 feefa84c8dced3078d0050ba426c4c8a 325 Pfam PF01975 Survival protein SurE 39 266 1.9E-34 T 13-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 RAM_17530 feefa84c8dced3078d0050ba426c4c8a 325 Gene3D G3DSA:3.40.1210.10 29 322 7.3E-36 T 13-10-2018 IPR036523 SurE-like phosphatase/nucleotidase superfamily GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 RAM_13560 7b8599e47415034c9747fdc19c67e606 380 SUPERFAMILY SSF88659 92 150 1.96E-8 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_13560 7b8599e47415034c9747fdc19c67e606 380 Gene3D G3DSA:1.10.1740.10 3 93 9.1E-7 T 13-10-2018 RAM_13560 7b8599e47415034c9747fdc19c67e606 380 Gene3D G3DSA:1.10.10.10 94 152 1.2E-5 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_13560 7b8599e47415034c9747fdc19c67e606 380 Pfam PF04542 Sigma-70 region 2 5 69 1.3E-8 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_13560 7b8599e47415034c9747fdc19c67e606 380 SUPERFAMILY SSF88946 3 82 7.46E-12 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_13560 7b8599e47415034c9747fdc19c67e606 380 Pfam PF08281 Sigma-70, region 4 99 149 1.2E-7 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_24705 0df8f402e18b8f9335065996b136b8a9 264 SUPERFAMILY SSF48256 8 242 1.31E-36 T 13-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 RAM_24705 0df8f402e18b8f9335065996b136b8a9 264 Gene3D G3DSA:1.10.580.10 37 237 1.2E-17 T 13-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 RAM_24705 0df8f402e18b8f9335065996b136b8a9 264 Pfam PF00285 Citrate synthase, C-terminal domain 42 240 1.2E-18 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 RAM_24705 0df8f402e18b8f9335065996b136b8a9 264 Gene3D G3DSA:1.10.230.10 103 212 1.2E-17 T 13-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain RAM_47455 c62998e2764d026e06bbb4009b14085c 607 ProSitePatterns PS00505 Phosphoenolpyruvate carboxykinase (GTP) signature. 271 279 - T 13-10-2018 IPR018091 Phosphoenolpyruvate carboxykinase, GTP-utilising, conserved site GO:0004613 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 RAM_47455 c62998e2764d026e06bbb4009b14085c 607 Hamap MF_00452 Phosphoenolpyruvate carboxykinase [GTP] [pckG]. 10 607 50.042 T 13-10-2018 IPR008209 Phosphoenolpyruvate carboxykinase, GTP-utilising GO:0004611|GO:0005525|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 RAM_47455 c62998e2764d026e06bbb4009b14085c 607 Pfam PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain 247 606 5.0E-173 T 13-10-2018 IPR035077 Phosphoenolpyruvate carboxykinase, GTP-utilising, C-terminal GO:0004611|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 RAM_47455 c62998e2764d026e06bbb4009b14085c 607 Pfam PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain 22 243 1.3E-99 T 13-10-2018 IPR035078 Phosphoenolpyruvate carboxykinase, GTP-utilising, N-terminal GO:0004611|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 RAM_47455 c62998e2764d026e06bbb4009b14085c 607 Gene3D G3DSA:2.170.8.10 57 400 1.5E-275 T 13-10-2018 RAM_47455 c62998e2764d026e06bbb4009b14085c 607 SUPERFAMILY SSF68923 12 246 4.24E-94 T 13-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 RAM_47455 c62998e2764d026e06bbb4009b14085c 607 SUPERFAMILY SSF53795 247 606 1.14E-157 T 13-10-2018 RAM_47455 c62998e2764d026e06bbb4009b14085c 607 Gene3D G3DSA:3.40.449.10 21 246 1.5E-275 T 13-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 RAM_47455 c62998e2764d026e06bbb4009b14085c 607 Gene3D G3DSA:3.90.228.20 247 602 1.5E-275 T 13-10-2018 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 RAM_47455 c62998e2764d026e06bbb4009b14085c 607 PIRSF PIRSF001348 2 607 4.6E-283 T 13-10-2018 IPR008209 Phosphoenolpyruvate carboxykinase, GTP-utilising GO:0004611|GO:0005525|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 RAM_01060 299237edeb50554cbd61b9a41510f143 239 Gene3D G3DSA:2.160.10.10 3 186 1.1E-40 T 13-10-2018 RAM_01060 299237edeb50554cbd61b9a41510f143 239 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 173 205 1.8E-7 T 13-10-2018 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00540+2.3.1.129 RAM_01060 299237edeb50554cbd61b9a41510f143 239 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 16 48 3.0E-8 T 13-10-2018 IPR001451 Hexapeptide repeat RAM_01060 299237edeb50554cbd61b9a41510f143 239 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 110 133 1.3E-4 T 13-10-2018 IPR001451 Hexapeptide repeat RAM_01060 299237edeb50554cbd61b9a41510f143 239 SUPERFAMILY SSF51161 4 207 2.25E-51 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily RAM_01060 299237edeb50554cbd61b9a41510f143 239 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 143 171 - T 13-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 RAM_26620 2df69fe5f4156828e30cafbd4a26fff0 442 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 80 92 2.6E-6 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RAM_26620 2df69fe5f4156828e30cafbd4a26fff0 442 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 193 206 2.6E-6 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RAM_26620 2df69fe5f4156828e30cafbd4a26fff0 442 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 384 397 2.6E-6 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RAM_26620 2df69fe5f4156828e30cafbd4a26fff0 442 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 60 78 2.6E-6 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RAM_26620 2df69fe5f4156828e30cafbd4a26fff0 442 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 279 298 2.6E-6 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RAM_26620 2df69fe5f4156828e30cafbd4a26fff0 442 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 37 288 4.6E-29 T 13-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 RAM_26620 2df69fe5f4156828e30cafbd4a26fff0 442 SUPERFAMILY SSF50621 266 429 9.0E-31 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 RAM_26620 2df69fe5f4156828e30cafbd4a26fff0 442 SUPERFAMILY SSF51419 34 290 1.12E-43 T 13-10-2018 IPR029066 PLP-binding barrel RAM_26620 2df69fe5f4156828e30cafbd4a26fff0 442 Gene3D G3DSA:3.20.20.10 37 270 3.7E-47 T 13-10-2018 IPR029066 PLP-binding barrel RAM_26620 2df69fe5f4156828e30cafbd4a26fff0 442 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 289 384 1.2E-10 T 13-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 RAM_26620 2df69fe5f4156828e30cafbd4a26fff0 442 Gene3D G3DSA:2.40.37.10 271 432 2.4E-34 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 RAM_26620 2df69fe5f4156828e30cafbd4a26fff0 442 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 229 246 - T 13-10-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site RAM_29285 da1704795f0020cec9974c1232b35280 585 PRINTS PR00762 Chloride channel signature 179 198 5.4E-25 T 13-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 RAM_29285 da1704795f0020cec9974c1232b35280 585 PRINTS PR00762 Chloride channel signature 396 415 5.4E-25 T 13-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 RAM_29285 da1704795f0020cec9974c1232b35280 585 PRINTS PR00762 Chloride channel signature 378 394 5.4E-25 T 13-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 RAM_29285 da1704795f0020cec9974c1232b35280 585 PRINTS PR00762 Chloride channel signature 343 363 5.4E-25 T 13-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 RAM_29285 da1704795f0020cec9974c1232b35280 585 PRINTS PR00762 Chloride channel signature 99 116 5.4E-25 T 13-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 RAM_29285 da1704795f0020cec9974c1232b35280 585 Pfam PF00571 CBS domain 533 577 0.0028 T 13-10-2018 IPR000644 CBS domain RAM_29285 da1704795f0020cec9974c1232b35280 585 SUPERFAMILY SSF81340 16 447 6.41E-116 T 13-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 RAM_29285 da1704795f0020cec9974c1232b35280 585 Pfam PF00654 Voltage gated chloride channel 86 428 4.3E-99 T 13-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 RAM_29285 da1704795f0020cec9974c1232b35280 585 Gene3D G3DSA:3.10.580.10 460 580 2.6E-11 T 13-10-2018 RAM_29285 da1704795f0020cec9974c1232b35280 585 SUPERFAMILY SSF54631 471 577 9.82E-15 T 13-10-2018 RAM_29285 da1704795f0020cec9974c1232b35280 585 Gene3D G3DSA:1.10.3080.10 16 449 8.8E-120 T 13-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 RAM_28965 5edda3e7b1066d97cc6003d137dd40e9 395 Gene3D G3DSA:3.30.9.50 35 267 5.4E-57 T 13-10-2018 RAM_28965 5edda3e7b1066d97cc6003d137dd40e9 395 Pfam PF01494 FAD binding domain 107 312 6.9E-12 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_28965 5edda3e7b1066d97cc6003d137dd40e9 395 SUPERFAMILY SSF51905 1 367 8.5E-47 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_28965 5edda3e7b1066d97cc6003d137dd40e9 395 Gene3D G3DSA:3.50.50.60 2 338 5.4E-57 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_01930 3f906243e84879e9c50098d32ef3cf6b 131 SUPERFAMILY SSF55729 23 104 4.96E-10 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_01930 3f906243e84879e9c50098d32ef3cf6b 131 Gene3D G3DSA:3.40.630.30 2 107 5.1E-9 T 13-10-2018 RAM_01930 3f906243e84879e9c50098d32ef3cf6b 131 Pfam PF00583 Acetyltransferase (GNAT) family 52 85 1.2E-4 T 13-10-2018 IPR000182 GNAT domain RAM_09090 88ac756d22724b108c92c19ce7aa2d25 166 TIGRFAM TIGR02983 SigE-fam_strep: RNA polymerase sigma-70 factor, sigma-E family 4 159 9.0E-44 T 13-10-2018 IPR014325 RNA polymerase sigma-E factor, actinobacteria GO:0016987 RAM_09090 88ac756d22724b108c92c19ce7aa2d25 166 Gene3D G3DSA:1.10.1740.10 1 84 1.8E-8 T 13-10-2018 RAM_09090 88ac756d22724b108c92c19ce7aa2d25 166 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 13 155 5.9E-20 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_09090 88ac756d22724b108c92c19ce7aa2d25 166 Pfam PF08281 Sigma-70, region 4 103 154 4.0E-15 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_09090 88ac756d22724b108c92c19ce7aa2d25 166 SUPERFAMILY SSF88659 103 159 1.07E-13 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_09090 88ac756d22724b108c92c19ce7aa2d25 166 SUPERFAMILY SSF88946 3 94 9.02E-14 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_09090 88ac756d22724b108c92c19ce7aa2d25 166 Pfam PF04542 Sigma-70 region 2 19 79 1.1E-7 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_09090 88ac756d22724b108c92c19ce7aa2d25 166 Gene3D G3DSA:1.10.10.10 101 160 3.7E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_39710 9c105c14f43daa249e39c5b0f880a63f 595 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 257 311 - T 13-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_39710 9c105c14f43daa249e39c5b0f880a63f 595 PRINTS PR01165 Cytochrome c oxidase subunit I signature 27 52 4.3E-99 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_39710 9c105c14f43daa249e39c5b0f880a63f 595 PRINTS PR01165 Cytochrome c oxidase subunit I signature 74 97 4.3E-99 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_39710 9c105c14f43daa249e39c5b0f880a63f 595 PRINTS PR01165 Cytochrome c oxidase subunit I signature 205 224 4.3E-99 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_39710 9c105c14f43daa249e39c5b0f880a63f 595 PRINTS PR01165 Cytochrome c oxidase subunit I signature 176 194 4.3E-99 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_39710 9c105c14f43daa249e39c5b0f880a63f 595 PRINTS PR01165 Cytochrome c oxidase subunit I signature 144 156 4.3E-99 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_39710 9c105c14f43daa249e39c5b0f880a63f 595 PRINTS PR01165 Cytochrome c oxidase subunit I signature 234 255 4.3E-99 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_39710 9c105c14f43daa249e39c5b0f880a63f 595 PRINTS PR01165 Cytochrome c oxidase subunit I signature 386 405 4.3E-99 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_39710 9c105c14f43daa249e39c5b0f880a63f 595 PRINTS PR01165 Cytochrome c oxidase subunit I signature 255 276 4.3E-99 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_39710 9c105c14f43daa249e39c5b0f880a63f 595 PRINTS PR01165 Cytochrome c oxidase subunit I signature 101 125 4.3E-99 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_39710 9c105c14f43daa249e39c5b0f880a63f 595 PRINTS PR01165 Cytochrome c oxidase subunit I signature 301 316 4.3E-99 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_39710 9c105c14f43daa249e39c5b0f880a63f 595 PRINTS PR01165 Cytochrome c oxidase subunit I signature 436 457 4.3E-99 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_39710 9c105c14f43daa249e39c5b0f880a63f 595 PRINTS PR01165 Cytochrome c oxidase subunit I signature 323 344 4.3E-99 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_39710 9c105c14f43daa249e39c5b0f880a63f 595 PRINTS PR01165 Cytochrome c oxidase subunit I signature 358 376 4.3E-99 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_39710 9c105c14f43daa249e39c5b0f880a63f 595 TIGRFAM TIGR02891 CtaD_CoxA: cytochrome c oxidase, subunit I 30 532 6.4E-219 T 13-10-2018 IPR014241 Cytochrome c oxidase, subunit I bacterial type GO:0004129|GO:0005886|GO:0015990|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 RAM_39710 9c105c14f43daa249e39c5b0f880a63f 595 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 36 480 1.6E-151 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_39710 9c105c14f43daa249e39c5b0f880a63f 595 Gene3D G3DSA:1.20.210.10 16 541 5.1E-210 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_39710 9c105c14f43daa249e39c5b0f880a63f 595 SUPERFAMILY SSF81442 25 535 6.54E-179 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_01475 61e8d1e04c584f407e138dcb200bb91e 117 Pfam PF13466 STAS domain 26 105 2.0E-15 T 13-10-2018 IPR002645 STAS domain RAM_01475 61e8d1e04c584f407e138dcb200bb91e 117 TIGRFAM TIGR00377 ant_ant_sig: anti-anti-sigma factor 15 113 7.8E-19 T 13-10-2018 IPR003658 Anti-sigma factor antagonist GO:0006355|GO:0045152 RAM_01475 61e8d1e04c584f407e138dcb200bb91e 117 Gene3D G3DSA:3.30.750.24 18 117 3.3E-23 T 13-10-2018 IPR036513 STAS domain superfamily RAM_01475 61e8d1e04c584f407e138dcb200bb91e 117 SUPERFAMILY SSF52091 15 114 9.03E-19 T 13-10-2018 IPR036513 STAS domain superfamily RAM_10740 cabfa3e7f5a32f0fb56e22b8cf253d7e 931 TIGRFAM TIGR00759 aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type 29 921 0.0 T 13-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 RAM_10740 cabfa3e7f5a32f0fb56e22b8cf253d7e 931 Gene3D G3DSA:3.40.50.970 78 500 4.6E-131 T 13-10-2018 RAM_10740 cabfa3e7f5a32f0fb56e22b8cf253d7e 931 SUPERFAMILY SSF52518 504 736 2.59E-86 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_10740 cabfa3e7f5a32f0fb56e22b8cf253d7e 931 Gene3D G3DSA:3.40.50.970 501 741 9.6E-102 T 13-10-2018 RAM_10740 cabfa3e7f5a32f0fb56e22b8cf253d7e 931 SUPERFAMILY SSF52518 79 498 2.75E-128 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_10740 cabfa3e7f5a32f0fb56e22b8cf253d7e 931 Gene3D G3DSA:3.40.50.920 744 924 1.5E-59 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RAM_10740 cabfa3e7f5a32f0fb56e22b8cf253d7e 931 SUPERFAMILY SSF52922 739 917 2.62E-50 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RAM_10740 cabfa3e7f5a32f0fb56e22b8cf253d7e 931 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 160 327 2.3E-8 T 13-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 RAM_10740 cabfa3e7f5a32f0fb56e22b8cf253d7e 931 PIRSF PIRSF000156 19 925 0.0 T 13-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 RAM_40530 5c81c8682d3a957875fa56c436e02bd6 470 SUPERFAMILY SSF103473 12 463 5.23E-60 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_40530 5c81c8682d3a957875fa56c436e02bd6 470 Gene3D G3DSA:1.20.1250.20 5 198 2.5E-35 T 13-10-2018 RAM_40530 5c81c8682d3a957875fa56c436e02bd6 470 Pfam PF07690 Major Facilitator Superfamily 18 411 1.1E-41 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_40530 5c81c8682d3a957875fa56c436e02bd6 470 Gene3D G3DSA:1.20.1250.20 258 465 5.1E-20 T 13-10-2018 RAM_09145 c2a54f5f90b38d3ddf457087dbb86a8a 300 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 164 186 1.6E-6 T 13-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) RAM_09145 c2a54f5f90b38d3ddf457087dbb86a8a 300 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 34 51 1.6E-6 T 13-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) RAM_09145 c2a54f5f90b38d3ddf457087dbb86a8a 300 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 226 243 1.6E-6 T 13-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) RAM_09145 c2a54f5f90b38d3ddf457087dbb86a8a 300 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 33 283 1.1E-55 T 13-10-2018 IPR013658 SMP-30/Gluconolactonase/LRE-like region RAM_09145 c2a54f5f90b38d3ddf457087dbb86a8a 300 SUPERFAMILY SSF63829 19 298 5.23E-63 T 13-10-2018 RAM_09145 c2a54f5f90b38d3ddf457087dbb86a8a 300 Gene3D G3DSA:2.120.10.30 12 299 9.8E-104 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RAM_08595 a7febc397ee40aa2272d88b2eb375bc5 298 SUPERFAMILY SSF51679 25 298 3.2E-30 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_08595 a7febc397ee40aa2272d88b2eb375bc5 298 Gene3D G3DSA:3.20.20.30 20 294 4.8E-28 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_08595 a7febc397ee40aa2272d88b2eb375bc5 298 Pfam PF00296 Luciferase-like monooxygenase 17 273 1.2E-12 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_08595 a7febc397ee40aa2272d88b2eb375bc5 298 TIGRFAM TIGR03620 F420_MSMEG_4141: probable F420-dependent oxidoreductase, MSMEG_4141 family 12 297 2.5E-70 T 13-10-2018 IPR019922 Luciferase-like, F420-dependent oxidoreductase, MSMEG4141, predicted RAM_01645 41fa408db2ec77cd052166a37075f02d 147 Gene3D G3DSA:3.40.50.300 1 147 2.5E-32 T 13-10-2018 RAM_01645 41fa408db2ec77cd052166a37075f02d 147 SUPERFAMILY SSF52540 2 139 1.24E-6 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_40110 dacfb26dc42edccff6dda676f23d5cf9 217 Gene3D G3DSA:1.10.10.60 112 217 5.4E-23 T 13-10-2018 RAM_40110 dacfb26dc42edccff6dda676f23d5cf9 217 Pfam PF12833 Helix-turn-helix domain 136 216 8.6E-22 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_40110 dacfb26dc42edccff6dda676f23d5cf9 217 SUPERFAMILY SSF46689 178 216 5.38E-6 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_40110 dacfb26dc42edccff6dda676f23d5cf9 217 SMART SM00342 130 214 6.5E-12 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_16135 ecbc289854e32ce5d8955649852d07a1 152 SUPERFAMILY SSF52833 2 148 4.71E-25 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RAM_16135 ecbc289854e32ce5d8955649852d07a1 152 Gene3D G3DSA:3.40.30.10 1 148 2.6E-25 T 13-10-2018 RAM_16135 ecbc289854e32ce5d8955649852d07a1 152 Pfam PF00578 AhpC/TSA family 5 125 1.2E-18 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 RAM_46630 f52c3231eab58fdd6a99268f58eeb5b8 490 PRINTS PR00990 Ribokinase signature 178 199 9.5E-10 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 RAM_46630 f52c3231eab58fdd6a99268f58eeb5b8 490 PRINTS PR00990 Ribokinase signature 387 398 9.5E-10 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 RAM_46630 f52c3231eab58fdd6a99268f58eeb5b8 490 PRINTS PR00990 Ribokinase signature 205 224 9.5E-10 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 RAM_46630 f52c3231eab58fdd6a99268f58eeb5b8 490 Gene3D G3DSA:3.40.1190.20 172 484 2.8E-51 T 13-10-2018 IPR029056 Ribokinase-like RAM_46630 f52c3231eab58fdd6a99268f58eeb5b8 490 SUPERFAMILY SSF53613 175 483 3.59E-39 T 13-10-2018 IPR029056 Ribokinase-like RAM_46630 f52c3231eab58fdd6a99268f58eeb5b8 490 Pfam PF00294 pfkB family carbohydrate kinase 174 459 1.7E-23 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB RAM_23725 61a7099832b90856344d0ef7b6da96f0 133 SUPERFAMILY SSF50475 1 130 5.3E-25 T 13-10-2018 RAM_23725 61a7099832b90856344d0ef7b6da96f0 133 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 4 95 6.9E-13 T 13-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RAM_23725 61a7099832b90856344d0ef7b6da96f0 133 TIGRFAM TIGR03668 Rv0121_F420: PPOX class probable F420-dependent enzyme, Rv0121 family 4 131 1.6E-49 T 13-10-2018 IPR019967 F420-dependent enzyme, PPOX class, family Rv0121, probable RAM_23725 61a7099832b90856344d0ef7b6da96f0 133 Gene3D G3DSA:2.30.110.10 1 131 1.2E-39 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_13890 65185caf0ef2f18570ceca51ace2ac54 219 Gene3D G3DSA:1.10.10.1320 3 65 2.1E-24 T 13-10-2018 RAM_13890 65185caf0ef2f18570ceca51ace2ac54 219 Pfam PF13490 Putative zinc-finger 12 37 9.8E-9 T 13-10-2018 IPR027383 Putative zinc-finger RAM_24170 610fe8d48b18f14482ca3c46f0910f13 443 Pfam PF13522 Glutamine amidotransferase domain 58 195 2.3E-9 T 13-10-2018 RAM_24170 610fe8d48b18f14482ca3c46f0910f13 443 SUPERFAMILY SSF56235 7 253 3.09E-45 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RAM_24170 610fe8d48b18f14482ca3c46f0910f13 443 Gene3D G3DSA:3.60.20.10 1 441 3.7E-124 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RAM_24170 610fe8d48b18f14482ca3c46f0910f13 443 PIRSF PIRSF000485 1 443 5.3E-135 T 13-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 RAM_24170 610fe8d48b18f14482ca3c46f0910f13 443 SUPERFAMILY SSF53271 236 442 6.42E-55 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like RAM_24170 610fe8d48b18f14482ca3c46f0910f13 443 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 1 440 39.131 T 13-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 RAM_24170 610fe8d48b18f14482ca3c46f0910f13 443 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 5 441 6.4E-125 T 13-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 RAM_24170 610fe8d48b18f14482ca3c46f0910f13 443 Gene3D G3DSA:3.40.50.2020 260 424 3.7E-124 T 13-10-2018 RAM_15040 669d395457088b198b5e6b973b26fca8 200 Gene3D G3DSA:3.30.110.150 109 191 4.3E-28 T 13-10-2018 IPR038594 SepF-like superfamily RAM_15040 669d395457088b198b5e6b973b26fca8 200 Hamap MF_01197 Cell division protein SepF [sepF]. 1 191 21.784 T 13-10-2018 IPR023052 Cell division protein SepF GO:0090529 RAM_15040 669d395457088b198b5e6b973b26fca8 200 Pfam PF04472 Cell division protein SepF 112 183 1.3E-25 T 13-10-2018 IPR007561 Cell division protein SepF/SepF-related GO:0090529 RAM_27790 57e2902793b81016d34fe11850dab6c4 184 Pfam PF00652 Ricin-type beta-trefoil lectin domain 94 177 7.8E-8 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_27790 57e2902793b81016d34fe11850dab6c4 184 Gene3D G3DSA:2.80.10.50 50 180 1.1E-22 T 13-10-2018 RAM_27790 57e2902793b81016d34fe11850dab6c4 184 SUPERFAMILY SSF50370 52 177 1.09E-22 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_17345 957f938cefb0dc9e3f8936b5aff18699 626 Pfam PF07944 Beta-L-arabinofuranosidase, GH127 37 538 4.5E-131 T 13-10-2018 IPR012878 Beta-L-arabinofuranosidase, GH127 RAM_17345 957f938cefb0dc9e3f8936b5aff18699 626 SUPERFAMILY SSF48208 60 409 9.87E-27 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_04020 a3c0f446528cd934cc99c6de7c80b6e7 433 SMART SM00387 334 428 5.0E-4 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_04020 a3c0f446528cd934cc99c6de7c80b6e7 433 Gene3D G3DSA:3.30.565.10 299 429 7.3E-20 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_04020 a3c0f446528cd934cc99c6de7c80b6e7 433 Pfam PF13581 Histidine kinase-like ATPase domain 325 392 5.2E-7 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_04020 a3c0f446528cd934cc99c6de7c80b6e7 433 Pfam PF04024 PspC domain 26 80 1.3E-13 T 13-10-2018 IPR007168 Phage shock protein, PspC, N-terminal RAM_04020 a3c0f446528cd934cc99c6de7c80b6e7 433 SUPERFAMILY SSF55874 333 426 5.63E-13 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_07405 762f10f3546f04117bad5760e9cbc159 313 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 88 2.7E-9 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_07405 762f10f3546f04117bad5760e9cbc159 313 Pfam PF00107 Zinc-binding dehydrogenase 156 237 1.4E-8 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RAM_07405 762f10f3546f04117bad5760e9cbc159 313 SUPERFAMILY SSF50129 1 158 4.26E-33 T 13-10-2018 IPR011032 GroES-like superfamily RAM_07405 762f10f3546f04117bad5760e9cbc159 313 SMART SM00829 10 309 1.3E-10 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_07405 762f10f3546f04117bad5760e9cbc159 313 Gene3D G3DSA:3.40.50.720 136 261 2.0E-66 T 13-10-2018 RAM_07405 762f10f3546f04117bad5760e9cbc159 313 SUPERFAMILY SSF51735 118 253 3.01E-26 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_07405 762f10f3546f04117bad5760e9cbc159 313 Gene3D G3DSA:3.90.180.10 14 309 2.0E-66 T 13-10-2018 RAM_20410 d3ab616b7322be5a6af67781072304b1 574 Pfam PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase 57 287 8.9E-11 T 13-10-2018 IPR003342 Glycosyl transferase family 39/83 GO:0000030|GO:0006493|GO:0016020 Reactome: R-HSA-5173105 RAM_16365 7f50b3d00dccd055c4c119e116c7c7b1 234 SUPERFAMILY SSF81343 10 234 3.11E-45 T 13-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_16365 7f50b3d00dccd055c4c119e116c7c7b1 234 TIGRFAM TIGR02046 sdhC_b558_fam: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family 19 233 2.8E-61 T 13-10-2018 IPR011138 Succinate dehydrogenase cytochrome b558 subunit RAM_16365 7f50b3d00dccd055c4c119e116c7c7b1 234 Gene3D G3DSA:1.20.1300.10 10 234 8.9E-39 T 13-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_16475 236625f4ca661f5586cc1e00118ab671 467 Pfam PF00027 Cyclic nucleotide-binding domain 112 199 1.3E-14 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain RAM_16475 236625f4ca661f5586cc1e00118ab671 467 Gene3D G3DSA:2.60.120.10 87 219 1.6E-19 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_16475 236625f4ca661f5586cc1e00118ab671 467 SUPERFAMILY SSF56563 298 460 3.79E-5 T 13-10-2018 RAM_16475 236625f4ca661f5586cc1e00118ab671 467 SUPERFAMILY SSF51206 98 204 1.03E-21 T 13-10-2018 IPR018490 Cyclic nucleotide-binding-like RAM_16475 236625f4ca661f5586cc1e00118ab671 467 SMART SM00100 92 215 3.5E-9 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain RAM_28580 3e7e529f79bc250b3312914eda2e8cd1 460 Gene3D G3DSA:1.10.287.130 187 309 1.4E-21 T 13-10-2018 RAM_28580 3e7e529f79bc250b3312914eda2e8cd1 460 PRINTS PR00344 Bacterial sensor protein C-terminal signature 443 456 2.1E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_28580 3e7e529f79bc250b3312914eda2e8cd1 460 PRINTS PR00344 Bacterial sensor protein C-terminal signature 404 414 2.1E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_28580 3e7e529f79bc250b3312914eda2e8cd1 460 PRINTS PR00344 Bacterial sensor protein C-terminal signature 386 400 2.1E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_28580 3e7e529f79bc250b3312914eda2e8cd1 460 PRINTS PR00344 Bacterial sensor protein C-terminal signature 419 437 2.1E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_28580 3e7e529f79bc250b3312914eda2e8cd1 460 Pfam PF00512 His Kinase A (phospho-acceptor) domain 238 307 4.2E-10 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_28580 3e7e529f79bc250b3312914eda2e8cd1 460 SMART SM00387 349 459 2.1E-30 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_28580 3e7e529f79bc250b3312914eda2e8cd1 460 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 352 457 3.2E-20 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_28580 3e7e529f79bc250b3312914eda2e8cd1 460 Gene3D G3DSA:3.30.565.10 312 459 8.0E-33 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_28580 3e7e529f79bc250b3312914eda2e8cd1 460 SMART SM00304 183 236 1.1E-7 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_28580 3e7e529f79bc250b3312914eda2e8cd1 460 SUPERFAMILY SSF47384 220 307 6.87E-11 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RAM_28580 3e7e529f79bc250b3312914eda2e8cd1 460 SUPERFAMILY SSF55874 313 458 6.16E-33 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_28580 3e7e529f79bc250b3312914eda2e8cd1 460 SMART SM00388 237 309 2.7E-7 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_34490 3e93e86a15559a06ee7910f185ecd2a8 873 Pfam PF08264 Anticodon-binding domain of tRNA 609 752 3.2E-41 T 13-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 RAM_34490 3e93e86a15559a06ee7910f185ecd2a8 873 Gene3D G3DSA:3.40.50.620 32 528 6.3E-295 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAM_34490 3e93e86a15559a06ee7910f185ecd2a8 873 Hamap MF_02004 Valine--tRNA ligase [valS]. 12 871 15.027 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 RAM_34490 3e93e86a15559a06ee7910f185ecd2a8 873 SUPERFAMILY SSF47323 578 819 7.29E-57 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 RAM_34490 3e93e86a15559a06ee7910f185ecd2a8 873 SUPERFAMILY SSF46589 806 870 4.13E-13 T 13-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 RAM_34490 3e93e86a15559a06ee7910f185ecd2a8 873 PRINTS PR00986 Valyl-tRNA synthetase signature 478 496 2.3E-37 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 RAM_34490 3e93e86a15559a06ee7910f185ecd2a8 873 PRINTS PR00986 Valyl-tRNA synthetase signature 238 255 2.3E-37 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 RAM_34490 3e93e86a15559a06ee7910f185ecd2a8 873 PRINTS PR00986 Valyl-tRNA synthetase signature 46 57 2.3E-37 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 RAM_34490 3e93e86a15559a06ee7910f185ecd2a8 873 PRINTS PR00986 Valyl-tRNA synthetase signature 447 468 2.3E-37 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 RAM_34490 3e93e86a15559a06ee7910f185ecd2a8 873 PRINTS PR00986 Valyl-tRNA synthetase signature 353 366 2.3E-37 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 RAM_34490 3e93e86a15559a06ee7910f185ecd2a8 873 SUPERFAMILY SSF50677 202 341 1.18E-53 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 RAM_34490 3e93e86a15559a06ee7910f185ecd2a8 873 SUPERFAMILY SSF52374 10 577 2.94E-136 T 13-10-2018 RAM_34490 3e93e86a15559a06ee7910f185ecd2a8 873 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 25 566 7.8E-193 T 13-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 RAM_34490 3e93e86a15559a06ee7910f185ecd2a8 873 Gene3D G3DSA:3.90.740.10 185 349 6.3E-295 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 RAM_34490 3e93e86a15559a06ee7910f185ecd2a8 873 Gene3D G3DSA:1.10.730.10 13 742 6.3E-295 T 13-10-2018 RAM_34490 3e93e86a15559a06ee7910f185ecd2a8 873 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 806 870 9.7E-16 T 13-10-2018 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 RAM_34490 3e93e86a15559a06ee7910f185ecd2a8 873 TIGRFAM TIGR00422 valS: valine--tRNA ligase 14 851 0.0 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 RAM_34490 3e93e86a15559a06ee7910f185ecd2a8 873 Gene3D G3DSA:1.10.287.380 799 871 5.1E-16 T 13-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 RAM_34490 3e93e86a15559a06ee7910f185ecd2a8 873 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 53 64 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 RAM_22485 17786ea50ead1effa4b1510f54fb3c80 562 Gene3D G3DSA:1.10.8.870 409 549 2.3E-32 T 13-10-2018 IPR038299 Alpha-glycerophosphate oxidase, C-terminal domain superfamily KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RAM_22485 17786ea50ead1effa4b1510f54fb3c80 562 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 399 522 1.2E-32 T 13-10-2018 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RAM_22485 17786ea50ead1effa4b1510f54fb3c80 562 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 50 62 6.0E-32 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RAM_22485 17786ea50ead1effa4b1510f54fb3c80 562 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 34 44 6.0E-32 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RAM_22485 17786ea50ead1effa4b1510f54fb3c80 562 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 365 377 6.0E-32 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RAM_22485 17786ea50ead1effa4b1510f54fb3c80 562 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 335 341 6.0E-32 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RAM_22485 17786ea50ead1effa4b1510f54fb3c80 562 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 21 33 6.0E-32 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RAM_22485 17786ea50ead1effa4b1510f54fb3c80 562 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 96 108 6.0E-32 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RAM_22485 17786ea50ead1effa4b1510f54fb3c80 562 SUPERFAMILY SSF54373 249 341 1.22E-6 T 13-10-2018 RAM_22485 17786ea50ead1effa4b1510f54fb3c80 562 ProSitePatterns PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1. 26 43 - T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RAM_22485 17786ea50ead1effa4b1510f54fb3c80 562 SUPERFAMILY SSF51905 18 393 8.21E-40 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_22485 17786ea50ead1effa4b1510f54fb3c80 562 Pfam PF01266 FAD dependent oxidoreductase 22 370 1.4E-50 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RAM_22485 17786ea50ead1effa4b1510f54fb3c80 562 Gene3D G3DSA:3.30.9.10 100 342 2.9E-131 T 13-10-2018 RAM_22485 17786ea50ead1effa4b1510f54fb3c80 562 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 370 380 - T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RAM_22485 17786ea50ead1effa4b1510f54fb3c80 562 Gene3D G3DSA:3.50.50.60 22 384 2.9E-131 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_26090 59040b95a41f3a354273c2c8d0a410fa 299 Gene3D G3DSA:3.40.710.10 2 299 1.3E-66 T 13-10-2018 RAM_26090 59040b95a41f3a354273c2c8d0a410fa 299 SUPERFAMILY SSF56601 5 271 5.22E-30 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_26090 59040b95a41f3a354273c2c8d0a410fa 299 Pfam PF13354 Beta-lactamase enzyme family 27 266 1.6E-38 T 13-10-2018 RAM_32460 63fcb1b7ec7bb18fe13b8c0330698762 383 Gene3D G3DSA:3.30.479.30 46 159 4.1E-24 T 13-10-2018 RAM_32460 63fcb1b7ec7bb18fe13b8c0330698762 383 Pfam PF01145 SPFH domain / Band 7 family 9 185 3.9E-9 T 13-10-2018 IPR001107 Band 7 domain RAM_32460 63fcb1b7ec7bb18fe13b8c0330698762 383 SUPERFAMILY SSF117892 37 177 1.29E-22 T 13-10-2018 IPR036013 Band 7/SPFH domain superfamily RAM_46780 750af07b2d01e0e61ad10b15685a183b 381 SUPERFAMILY SSF51556 48 342 2.38E-92 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_46780 750af07b2d01e0e61ad10b15685a183b 381 Gene3D G3DSA:2.30.40.10 3 368 3.9E-125 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_46780 750af07b2d01e0e61ad10b15685a183b 381 PIRSF PIRSF038994 3 374 5.2E-112 T 13-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 RAM_46780 750af07b2d01e0e61ad10b15685a183b 381 Pfam PF01979 Amidohydrolase family 44 371 3.4E-26 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RAM_46780 750af07b2d01e0e61ad10b15685a183b 381 Gene3D G3DSA:3.20.20.140 49 336 3.9E-125 T 13-10-2018 RAM_46780 750af07b2d01e0e61ad10b15685a183b 381 SUPERFAMILY SSF51338 2 377 4.32E-14 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_46780 750af07b2d01e0e61ad10b15685a183b 381 TIGRFAM TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase 9 360 5.3E-81 T 13-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 RAM_08235 57a390f64a7860d5bc84ed087fa6a78f 173 SUPERFAMILY SSF55729 2 153 1.22E-30 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_08235 57a390f64a7860d5bc84ed087fa6a78f 173 Pfam PF13302 Acetyltransferase (GNAT) domain 7 151 5.3E-25 T 13-10-2018 IPR000182 GNAT domain RAM_08235 57a390f64a7860d5bc84ed087fa6a78f 173 Gene3D G3DSA:3.40.630.30 1 166 9.4E-36 T 13-10-2018 RAM_18690 078042a92d7f1786cf4f9c2f6b89ae99 339 PRINTS PR00412 Epoxide hydrolase signature 309 331 9.9E-7 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_18690 078042a92d7f1786cf4f9c2f6b89ae99 339 PRINTS PR00412 Epoxide hydrolase signature 91 109 9.9E-7 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_18690 078042a92d7f1786cf4f9c2f6b89ae99 339 PRINTS PR00412 Epoxide hydrolase signature 168 181 9.9E-7 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_18690 078042a92d7f1786cf4f9c2f6b89ae99 339 Gene3D G3DSA:3.40.50.1820 51 335 9.4E-50 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_18690 078042a92d7f1786cf4f9c2f6b89ae99 339 Pfam PF00561 alpha/beta hydrolase fold 86 183 2.2E-17 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_18690 078042a92d7f1786cf4f9c2f6b89ae99 339 SUPERFAMILY SSF53474 60 334 8.51E-51 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_32870 5283e5968afa827235e6f1931e95058b 242 SUPERFAMILY SSF51182 146 233 3.06E-10 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RAM_32870 5283e5968afa827235e6f1931e95058b 242 SUPERFAMILY SSF51182 13 115 4.37E-25 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RAM_32870 5283e5968afa827235e6f1931e95058b 242 Gene3D G3DSA:2.60.120.10 6 126 1.1E-38 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_32870 5283e5968afa827235e6f1931e95058b 242 Pfam PF07883 Cupin domain 159 208 1.8E-6 T 13-10-2018 IPR013096 Cupin 2, conserved barrel RAM_32870 5283e5968afa827235e6f1931e95058b 242 Pfam PF07883 Cupin domain 41 108 3.2E-13 T 13-10-2018 IPR013096 Cupin 2, conserved barrel RAM_32870 5283e5968afa827235e6f1931e95058b 242 Gene3D G3DSA:2.60.120.10 127 229 3.9E-9 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_05290 9fe481c8bd60a7277bf70dd8c509c940 428 Gene3D G3DSA:1.25.40.10 154 349 4.9E-15 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_05290 9fe481c8bd60a7277bf70dd8c509c940 428 Gene3D G3DSA:1.25.40.10 350 426 1.1E-10 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_05290 9fe481c8bd60a7277bf70dd8c509c940 428 Gene3D G3DSA:1.10.260.40 6 81 5.0E-13 T 13-10-2018 RAM_05290 9fe481c8bd60a7277bf70dd8c509c940 428 Pfam PF13424 Tetratricopeptide repeat 355 421 1.1E-9 T 13-10-2018 RAM_05290 9fe481c8bd60a7277bf70dd8c509c940 428 SUPERFAMILY SSF48452 232 419 2.09E-16 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_05290 9fe481c8bd60a7277bf70dd8c509c940 428 Pfam PF13560 Helix-turn-helix domain 9 66 1.9E-11 T 13-10-2018 RAM_05290 9fe481c8bd60a7277bf70dd8c509c940 428 SUPERFAMILY SSF47413 9 67 2.0E-12 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_05290 9fe481c8bd60a7277bf70dd8c509c940 428 SMART SM00530 12 66 2.3E-8 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_41820 4eee48d31d45749116348e4286d130b4 305 Pfam PF01636 Phosphotransferase enzyme family 41 267 1.3E-31 T 13-10-2018 IPR002575 Aminoglycoside phosphotransferase RAM_41820 4eee48d31d45749116348e4286d130b4 305 Gene3D G3DSA:3.90.1200.10 125 294 1.1E-16 T 13-10-2018 RAM_41820 4eee48d31d45749116348e4286d130b4 305 SUPERFAMILY SSF56112 26 277 2.51E-47 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_41820 4eee48d31d45749116348e4286d130b4 305 Gene3D G3DSA:3.30.200.20 21 111 1.7E-13 T 13-10-2018 RAM_39845 8717f0137840ed80bb59a4440b21155c 154 Pfam PF11066 Protein of unknown function (DUF2867) 6 145 3.0E-28 T 13-10-2018 IPR021295 Protein of unknown function DUF2867 RAM_44205 d0cca64b02652da748e965d2e97c6ef1 300 SUPERFAMILY SSF55729 41 290 2.48E-15 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_44205 d0cca64b02652da748e965d2e97c6ef1 300 Pfam PF00583 Acetyltransferase (GNAT) family 215 290 2.7E-4 T 13-10-2018 IPR000182 GNAT domain RAM_44205 d0cca64b02652da748e965d2e97c6ef1 300 Gene3D G3DSA:3.40.630.30 28 298 5.6E-15 T 13-10-2018 RAM_47055 bbecede852359aaf9482f3fba27c5325 334 SUPERFAMILY SSF160240 232 311 4.18E-7 T 13-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 RAM_47055 bbecede852359aaf9482f3fba27c5325 334 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 17 310 4.5E-46 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RAM_47055 bbecede852359aaf9482f3fba27c5325 334 SUPERFAMILY SSF161111 15 229 8.37E-36 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily RAM_47055 bbecede852359aaf9482f3fba27c5325 334 Pfam PF01545 Cation efflux family 19 226 3.2E-34 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RAM_47055 bbecede852359aaf9482f3fba27c5325 334 Gene3D G3DSA:1.20.1510.10 15 227 9.9E-32 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily RAM_42725 9753cdd015641932cae1aa86e62ac88d 224 Pfam PF01609 Transposase DDE domain 33 200 2.0E-7 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 RAM_39985 958378295335909dfa2c22c278372115 216 SUPERFAMILY SSF55821 4 208 9.16E-56 T 13-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily RAM_39985 958378295335909dfa2c22c278372115 216 Pfam PF01300 Telomere recombination 24 197 3.3E-44 T 13-10-2018 IPR006070 YrdC-like domain GO:0003725 RAM_39985 958378295335909dfa2c22c278372115 216 Gene3D G3DSA:3.90.870.10 2 211 6.5E-64 T 13-10-2018 RAM_39985 958378295335909dfa2c22c278372115 216 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 11 208 3.6E-60 T 13-10-2018 IPR006070 YrdC-like domain GO:0003725 RAM_04220 86d643e5a12dee5c6572044b5efb5179 193 Gene3D G3DSA:1.10.340.30 14 141 1.1E-5 T 13-10-2018 RAM_04220 86d643e5a12dee5c6572044b5efb5179 193 TIGRFAM TIGR03252 TIGR03252: uncharacterized HhH-GPD family protein 4 192 4.1E-88 T 13-10-2018 IPR017658 Conserved hypothetical protein CHP03252, HhH-GPD RAM_04220 86d643e5a12dee5c6572044b5efb5179 193 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 26 176 2.0E-12 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 RAM_04220 86d643e5a12dee5c6572044b5efb5179 193 SUPERFAMILY SSF48150 7 146 1.66E-14 T 13-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 RAM_06435 33d4b5d9fcd403a9cc4e95ce25e642ed 416 Gene3D G3DSA:3.20.20.140 32 400 1.2E-135 T 13-10-2018 RAM_06435 33d4b5d9fcd403a9cc4e95ce25e642ed 416 SUPERFAMILY SSF51556 30 335 3.84E-67 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_06435 33d4b5d9fcd403a9cc4e95ce25e642ed 416 TIGRFAM TIGR02022 hutF: formiminoglutamate deiminase 1 413 4.7E-134 T 13-10-2018 IPR010252 Formiminoglutamate deiminase RAM_06435 33d4b5d9fcd403a9cc4e95ce25e642ed 416 SUPERFAMILY SSF51338 345 403 4.75E-12 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_06435 33d4b5d9fcd403a9cc4e95ce25e642ed 416 Pfam PF01979 Amidohydrolase family 29 390 1.1E-40 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RAM_06435 33d4b5d9fcd403a9cc4e95ce25e642ed 416 Gene3D G3DSA:2.30.40.10 1 394 1.2E-135 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_08210 0cc148c92d7cd5384ef085b12bd4f563 125 Gene3D G3DSA:2.170.150.40 9 120 5.6E-38 T 13-10-2018 RAM_08210 0cc148c92d7cd5384ef085b12bd4f563 125 Pfam PF04248 Domain of unknown function (DUF427) 24 114 1.5E-31 T 13-10-2018 IPR007361 Domain of unknown function DUF427 RAM_43265 c3b12a9532fe448bf5ea4188a4c15d9a 313 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 249 262 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RAM_43265 c3b12a9532fe448bf5ea4188a4c15d9a 313 Pfam PF00294 pfkB family carbohydrate kinase 30 304 3.1E-42 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB RAM_43265 c3b12a9532fe448bf5ea4188a4c15d9a 313 Gene3D G3DSA:3.40.1190.20 1 309 1.5E-71 T 13-10-2018 IPR029056 Ribokinase-like RAM_43265 c3b12a9532fe448bf5ea4188a4c15d9a 313 SUPERFAMILY SSF53613 2 305 7.02E-61 T 13-10-2018 IPR029056 Ribokinase-like RAM_25830 4233fe493fc92af7f7235173ff048b66 374 Gene3D G3DSA:3.40.50.2300 77 327 1.8E-68 T 13-10-2018 RAM_25830 4233fe493fc92af7f7235173ff048b66 374 Pfam PF00356 Bacterial regulatory proteins, lacI family 19 64 4.2E-15 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_25830 4233fe493fc92af7f7235173ff048b66 374 Pfam PF13377 Periplasmic binding protein-like domain 193 350 2.9E-32 T 13-10-2018 RAM_25830 4233fe493fc92af7f7235173ff048b66 374 Gene3D G3DSA:3.40.50.2300 183 312 1.8E-68 T 13-10-2018 RAM_25830 4233fe493fc92af7f7235173ff048b66 374 ProSitePatterns PS00356 LacI-type HTH domain signature. 20 38 - T 13-10-2018 RAM_25830 4233fe493fc92af7f7235173ff048b66 374 SMART SM00354 17 87 2.8E-26 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_25830 4233fe493fc92af7f7235173ff048b66 374 Gene3D G3DSA:1.10.260.40 10 74 3.2E-19 T 13-10-2018 RAM_25830 4233fe493fc92af7f7235173ff048b66 374 SUPERFAMILY SSF47413 17 73 9.09E-15 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_25830 4233fe493fc92af7f7235173ff048b66 374 SUPERFAMILY SSF53822 76 354 4.52E-64 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_34500 3b7e7b143742211c6ce10b8800aeafdd 145 Pfam PF12802 MarR family 35 92 4.6E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_34500 3b7e7b143742211c6ce10b8800aeafdd 145 SUPERFAMILY SSF46785 16 140 1.12E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_34500 3b7e7b143742211c6ce10b8800aeafdd 145 SMART SM00347 28 129 1.8E-15 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_34500 3b7e7b143742211c6ce10b8800aeafdd 145 Gene3D G3DSA:1.10.10.10 12 144 1.8E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_03335 cd7d180f8fc7e14276c317aa7e4c5dd8 420 Gene3D G3DSA:1.10.630.10 16 420 1.7E-122 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_03335 cd7d180f8fc7e14276c317aa7e4c5dd8 420 SUPERFAMILY SSF48264 27 417 7.2E-94 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_03335 cd7d180f8fc7e14276c317aa7e4c5dd8 420 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 359 368 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RAM_03335 cd7d180f8fc7e14276c317aa7e4c5dd8 420 Pfam PF00067 Cytochrome P450 59 387 4.2E-25 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_03335 cd7d180f8fc7e14276c317aa7e4c5dd8 420 PRINTS PR00359 B-class P450 signature 173 188 2.0E-48 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03335 cd7d180f8fc7e14276c317aa7e4c5dd8 420 PRINTS PR00359 B-class P450 signature 210 232 2.0E-48 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03335 cd7d180f8fc7e14276c317aa7e4c5dd8 420 PRINTS PR00359 B-class P450 signature 109 120 2.0E-48 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03335 cd7d180f8fc7e14276c317aa7e4c5dd8 420 PRINTS PR00359 B-class P450 signature 309 336 2.0E-48 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03335 cd7d180f8fc7e14276c317aa7e4c5dd8 420 PRINTS PR00359 B-class P450 signature 291 302 2.0E-48 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03335 cd7d180f8fc7e14276c317aa7e4c5dd8 420 PRINTS PR00359 B-class P450 signature 156 172 2.0E-48 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03335 cd7d180f8fc7e14276c317aa7e4c5dd8 420 PRINTS PR00359 B-class P450 signature 357 366 2.0E-48 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03335 cd7d180f8fc7e14276c317aa7e4c5dd8 420 PRINTS PR00359 B-class P450 signature 366 377 2.0E-48 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03335 cd7d180f8fc7e14276c317aa7e4c5dd8 420 PRINTS PR00385 P450 superfamily signature 366 377 9.9E-9 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_03335 cd7d180f8fc7e14276c317aa7e4c5dd8 420 PRINTS PR00385 P450 superfamily signature 357 366 9.9E-9 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_03335 cd7d180f8fc7e14276c317aa7e4c5dd8 420 PRINTS PR00385 P450 superfamily signature 291 302 9.9E-9 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_03335 cd7d180f8fc7e14276c317aa7e4c5dd8 420 PRINTS PR00385 P450 superfamily signature 256 273 9.9E-9 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_08110 46989ad78dae30312782df7fe73b1148 795 Pfam PF07971 Glycosyl hydrolase family 92 260 774 1.8E-142 T 13-10-2018 IPR012939 Glycosyl hydrolase family 92 RAM_08110 46989ad78dae30312782df7fe73b1148 795 Gene3D G3DSA:2.70.98.10 36 367 1.2E-216 T 13-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 RAM_08110 46989ad78dae30312782df7fe73b1148 795 Gene3D G3DSA:3.30.2080.10 315 775 1.2E-216 T 13-10-2018 RAM_08110 46989ad78dae30312782df7fe73b1148 795 TIGRFAM TIGR01180 aman2_put: putative alpha-1,2-mannosidase 10 775 5.9E-154 T 13-10-2018 IPR005887 Alpha-1,2-mannosidase, putative RAM_08110 46989ad78dae30312782df7fe73b1148 795 SUPERFAMILY SSF48208 290 715 3.85E-18 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_08110 46989ad78dae30312782df7fe73b1148 795 Gene3D G3DSA:1.20.1610.10 465 650 1.2E-216 T 13-10-2018 RAM_08110 46989ad78dae30312782df7fe73b1148 795 Gene3D G3DSA:1.20.1050.60 368 464 1.2E-216 T 13-10-2018 RAM_40880 61919af3d92142689f8c9b818085329e 326 Gene3D G3DSA:3.20.20.30 7 321 4.9E-61 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_40880 61919af3d92142689f8c9b818085329e 326 Pfam PF00296 Luciferase-like monooxygenase 10 296 3.5E-41 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_40880 61919af3d92142689f8c9b818085329e 326 SUPERFAMILY SSF51679 9 319 9.57E-47 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_40420 ccbbc17e1ae875c2d683796b8150766f 88 Pfam PF05402 Coenzyme PQQ synthesis protein D (PqqD) 25 85 3.0E-11 T 13-10-2018 IPR008792 Coenzyme PQQ synthesis D RAM_40420 ccbbc17e1ae875c2d683796b8150766f 88 TIGRFAM TIGR03859 PQQ_PqqD: coenzyme PQQ biosynthesis protein PqqD 8 85 1.7E-22 T 13-10-2018 IPR022479 Coenzyme PQQ synthesis D, bacteria GO:0018189|GO:0048038 RAM_40420 ccbbc17e1ae875c2d683796b8150766f 88 Gene3D G3DSA:1.10.10.1150 1 86 3.2E-28 T 13-10-2018 RAM_39785 a284322956f45c7efeca138893f2b7e7 131 Pfam PF01980 Uncharacterised protein family UPF0066 17 125 7.2E-30 T 13-10-2018 IPR023370 YaeB-like, N-terminal domain RAM_39785 a284322956f45c7efeca138893f2b7e7 131 TIGRFAM TIGR00104 tRNA_TsaA: tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA 2 126 3.2E-31 T 13-10-2018 IPR023370 YaeB-like, N-terminal domain RAM_39785 a284322956f45c7efeca138893f2b7e7 131 ProSitePatterns PS01318 TsaA-like domain signature. 77 88 - T 13-10-2018 IPR023368 Uncharacterised protein family UPF0066, conserved site RAM_39785 a284322956f45c7efeca138893f2b7e7 131 Gene3D G3DSA:2.40.30.70 1 128 1.5E-38 T 13-10-2018 IPR036414 YaeB, N-terminal domain superfamily RAM_39785 a284322956f45c7efeca138893f2b7e7 131 SUPERFAMILY SSF118196 2 126 7.45E-36 T 13-10-2018 IPR036413 YaeB-like superfamily RAM_25655 0325b4009ebbe58626c817776cb17b07 432 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 9 31 1.7E-7 T 13-10-2018 RAM_25655 0325b4009ebbe58626c817776cb17b07 432 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 198 223 1.7E-7 T 13-10-2018 RAM_25655 0325b4009ebbe58626c817776cb17b07 432 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 158 167 1.7E-7 T 13-10-2018 RAM_25655 0325b4009ebbe58626c817776cb17b07 432 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 414 429 1.7E-7 T 13-10-2018 RAM_25655 0325b4009ebbe58626c817776cb17b07 432 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 155 173 4.3E-7 T 13-10-2018 RAM_25655 0325b4009ebbe58626c817776cb17b07 432 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 10 29 4.3E-7 T 13-10-2018 RAM_25655 0325b4009ebbe58626c817776cb17b07 432 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 198 216 4.3E-7 T 13-10-2018 RAM_25655 0325b4009ebbe58626c817776cb17b07 432 SUPERFAMILY SSF51905 8 230 1.58E-23 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_25655 0325b4009ebbe58626c817776cb17b07 432 Gene3D G3DSA:3.50.50.60 1 427 1.9E-142 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_25655 0325b4009ebbe58626c817776cb17b07 432 SUPERFAMILY SSF51905 195 417 1.4E-10 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_25655 0325b4009ebbe58626c817776cb17b07 432 Pfam PF13434 L-lysine 6-monooxygenase (NADPH-requiring) 7 342 1.1E-107 T 13-10-2018 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase RAM_06775 ad6c9e128b8499e03850aec467fc1116 289 Pfam PF00561 alpha/beta hydrolase fold 27 266 2.2E-26 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_06775 ad6c9e128b8499e03850aec467fc1116 289 Gene3D G3DSA:3.40.50.1820 1 282 7.2E-55 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_06775 ad6c9e128b8499e03850aec467fc1116 289 SUPERFAMILY SSF53474 4 280 2.8E-67 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_06775 ad6c9e128b8499e03850aec467fc1116 289 PRINTS PR00412 Epoxide hydrolase signature 255 277 9.6E-7 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_06775 ad6c9e128b8499e03850aec467fc1116 289 PRINTS PR00412 Epoxide hydrolase signature 33 51 9.6E-7 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_06775 ad6c9e128b8499e03850aec467fc1116 289 PRINTS PR00412 Epoxide hydrolase signature 113 126 9.6E-7 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_06775 ad6c9e128b8499e03850aec467fc1116 289 PRINTS PR00111 Alpha/beta hydrolase fold signature 113 126 1.4E-6 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_06775 ad6c9e128b8499e03850aec467fc1116 289 PRINTS PR00111 Alpha/beta hydrolase fold signature 52 67 1.4E-6 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_06775 ad6c9e128b8499e03850aec467fc1116 289 PRINTS PR00111 Alpha/beta hydrolase fold signature 225 239 1.4E-6 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_22210 84240fb620182b6269c72245b6aaa8f3 599 Gene3D G3DSA:3.20.20.150 5 271 4.0E-72 T 13-10-2018 RAM_22210 84240fb620182b6269c72245b6aaa8f3 599 Gene3D G3DSA:3.10.180.10 284 408 2.7E-14 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_22210 84240fb620182b6269c72245b6aaa8f3 599 Gene3D G3DSA:3.10.180.10 409 593 1.6E-30 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_22210 84240fb620182b6269c72245b6aaa8f3 599 SUPERFAMILY SSF54593 304 584 8.58E-39 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_22210 84240fb620182b6269c72245b6aaa8f3 599 SUPERFAMILY SSF51658 6 270 6.08E-73 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily RAM_22210 84240fb620182b6269c72245b6aaa8f3 599 Pfam PF01261 Xylose isomerase-like TIM barrel 22 221 2.5E-37 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain RAM_22210 84240fb620182b6269c72245b6aaa8f3 599 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 411 517 5.8E-7 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RAM_15685 b2248b030fb76fa2a25d388b7002d341 426 Pfam PF09861 Domain of unknown function (DUF2088) 10 211 5.3E-50 T 13-10-2018 IPR018657 LarA-like, N-terminal GO:0050043 KEGG: 00620+5.1.2.1 RAM_15685 b2248b030fb76fa2a25d388b7002d341 426 Gene3D G3DSA:3.40.50.11440 35 268 9.0E-126 T 13-10-2018 RAM_15685 b2248b030fb76fa2a25d388b7002d341 426 Gene3D G3DSA:3.90.226.30 8 417 9.0E-126 T 13-10-2018 RAM_16775 b2306f03b77a15e4df4d07813bfa97ac 478 SUPERFAMILY SSF49899 161 477 2.22E-99 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily RAM_16775 b2306f03b77a15e4df4d07813bfa97ac 478 SUPERFAMILY SSF50370 26 147 3.15E-37 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_16775 b2306f03b77a15e4df4d07813bfa97ac 478 Gene3D G3DSA:2.60.120.200 159 478 5.0E-135 T 13-10-2018 RAM_16775 b2306f03b77a15e4df4d07813bfa97ac 478 Gene3D G3DSA:2.80.10.50 25 148 6.0E-38 T 13-10-2018 RAM_16775 b2306f03b77a15e4df4d07813bfa97ac 478 SMART SM00458 21 150 7.8E-25 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_16775 b2306f03b77a15e4df4d07813bfa97ac 478 Pfam PF00652 Ricin-type beta-trefoil lectin domain 26 147 1.4E-28 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_16775 b2306f03b77a15e4df4d07813bfa97ac 478 Pfam PF09206 Alpha-L-arabinofuranosidase B, catalytic 161 477 2.8E-135 T 13-10-2018 IPR015289 Alpha-L-arabinofuranosidase B, catalytic GO:0031221|GO:0046556 KEGG: 00520+3.2.1.55 RAM_44540 e9756fc19343bb30d805b73c042d10f8 204 SUPERFAMILY SSF53448 20 194 2.19E-17 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_44540 e9756fc19343bb30d805b73c042d10f8 204 Gene3D G3DSA:3.90.550.10 14 198 3.6E-30 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_44540 e9756fc19343bb30d805b73c042d10f8 204 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 20 160 4.8E-23 T 13-10-2018 IPR034683 Cytidylyltransferase IspD/TarI GO:0070567 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 RAM_00575 8dd1d115aa6927c5589ad6e3bf339639 222 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 186 198 3.0E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_00575 8dd1d115aa6927c5589ad6e3bf339639 222 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 170 186 3.0E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_00575 8dd1d115aa6927c5589ad6e3bf339639 222 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 156 170 3.0E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_00575 8dd1d115aa6927c5589ad6e3bf339639 222 Pfam PF00072 Response regulator receiver domain 4 117 1.4E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_00575 8dd1d115aa6927c5589ad6e3bf339639 222 SUPERFAMILY SSF52172 1 136 1.12E-34 T 13-10-2018 IPR011006 CheY-like superfamily RAM_00575 8dd1d115aa6927c5589ad6e3bf339639 222 SMART SM00421 153 210 1.9E-23 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_00575 8dd1d115aa6927c5589ad6e3bf339639 222 SMART SM00448 2 117 6.6E-35 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_00575 8dd1d115aa6927c5589ad6e3bf339639 222 Gene3D G3DSA:3.40.50.12740 2 216 4.1E-69 T 13-10-2018 RAM_00575 8dd1d115aa6927c5589ad6e3bf339639 222 SUPERFAMILY SSF46894 138 216 1.43E-21 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_00575 8dd1d115aa6927c5589ad6e3bf339639 222 Pfam PF00196 Bacterial regulatory proteins, luxR family 157 210 4.8E-17 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_32330 fd6314e3965c681a65f8ddb78013665c 131 SUPERFAMILY SSF55021 64 128 5.83E-17 T 13-10-2018 RAM_32330 fd6314e3965c681a65f8ddb78013665c 131 SUPERFAMILY SSF55021 2 59 3.66E-11 T 13-10-2018 RAM_32330 fd6314e3965c681a65f8ddb78013665c 131 Gene3D G3DSA:3.30.2130.10 2 130 1.9E-40 T 13-10-2018 RAM_32330 fd6314e3965c681a65f8ddb78013665c 131 PIRSF PIRSF008459 2 130 1.1E-32 T 13-10-2018 IPR016540 Uncharacterised conserved protein UCP008459 RAM_32330 fd6314e3965c681a65f8ddb78013665c 131 Pfam PF13840 ACT domain 61 123 4.4E-19 T 13-10-2018 IPR027795 CASTOR, ACT domain RAM_21995 8f5f5c3ed4ea2f8f72ef9b052c99af87 154 SMART SM00347 29 129 5.0E-18 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_21995 8f5f5c3ed4ea2f8f72ef9b052c99af87 154 Pfam PF01047 MarR family 39 91 2.0E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_21995 8f5f5c3ed4ea2f8f72ef9b052c99af87 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 53 69 1.4E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_21995 8f5f5c3ed4ea2f8f72ef9b052c99af87 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 70 85 1.4E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_21995 8f5f5c3ed4ea2f8f72ef9b052c99af87 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 89 105 1.4E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_21995 8f5f5c3ed4ea2f8f72ef9b052c99af87 154 SUPERFAMILY SSF46785 30 141 1.16E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_21995 8f5f5c3ed4ea2f8f72ef9b052c99af87 154 Gene3D G3DSA:1.10.10.10 6 144 2.8E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_37745 83d8e5dfba491d2af111c373464aaeaa 191 SUPERFAMILY SSF53597 2 185 1.57E-25 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RAM_37745 83d8e5dfba491d2af111c373464aaeaa 191 Pfam PF01872 RibD C-terminal domain 2 179 1.0E-22 T 13-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 RAM_37745 83d8e5dfba491d2af111c373464aaeaa 191 Gene3D G3DSA:3.40.430.10 2 183 2.2E-39 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RAM_47315 0622f1ddc7836f36875374416c56eb16 435 ProSitePatterns PS00095 C-5 cytosine-specific DNA methylases C-terminal signature. 314 332 - T 13-10-2018 IPR031303 DNA methylase, C-5 cytosine-specific, conserved site KEGG: 00270+2.1.1.37 RAM_47315 0622f1ddc7836f36875374416c56eb16 435 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 169 182 4.7E-12 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 RAM_47315 0622f1ddc7836f36875374416c56eb16 435 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 11 27 4.7E-12 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 RAM_47315 0622f1ddc7836f36875374416c56eb16 435 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 123 137 4.7E-12 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 RAM_47315 0622f1ddc7836f36875374416c56eb16 435 TIGRFAM TIGR00675 dcm: DNA (cytosine-5-)-methyltransferase 12 211 8.9E-35 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 RAM_47315 0622f1ddc7836f36875374416c56eb16 435 SUPERFAMILY SSF53335 11 336 2.04E-62 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_47315 0622f1ddc7836f36875374416c56eb16 435 Gene3D G3DSA:3.40.50.150 266 340 1.7E-7 T 13-10-2018 RAM_47315 0622f1ddc7836f36875374416c56eb16 435 Pfam PF00145 C-5 cytosine-specific DNA methylase 10 333 4.0E-53 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 RAM_47315 0622f1ddc7836f36875374416c56eb16 435 Gene3D G3DSA:3.40.50.150 3 215 4.3E-46 T 13-10-2018 RAM_19140 d22b2f0fba55c9c0e241967d3c4dbdff 423 Pfam PF01569 PAP2 superfamily 293 422 4.6E-7 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RAM_19140 d22b2f0fba55c9c0e241967d3c4dbdff 423 Gene3D G3DSA:1.10.606.20 38 423 1.8E-84 T 13-10-2018 RAM_19140 d22b2f0fba55c9c0e241967d3c4dbdff 423 SUPERFAMILY SSF48317 28 421 3.27E-59 T 13-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily RAM_19795 5963f0439975ef73324edd5cd6106687 553 Gene3D G3DSA:3.90.700.10 279 487 6.3E-60 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_19795 5963f0439975ef73324edd5cd6106687 553 SUPERFAMILY SSF51905 2 551 3.89E-37 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_19795 5963f0439975ef73324edd5cd6106687 553 Pfam PF00890 FAD binding domain 6 535 1.1E-108 T 13-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_19795 5963f0439975ef73324edd5cd6106687 553 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 7.9E-5 T 13-10-2018 RAM_19795 5963f0439975ef73324edd5cd6106687 553 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 175 190 7.9E-5 T 13-10-2018 RAM_19795 5963f0439975ef73324edd5cd6106687 553 Gene3D G3DSA:3.50.50.60 6 547 6.3E-60 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_19795 5963f0439975ef73324edd5cd6106687 553 PIRSF PIRSF036654 1 553 2.7E-278 T 13-10-2018 IPR014614 Uncharacterised conserved protein UCP036654 GO:0016627|GO:0055114 RAM_14025 947bb46fa81f1d18832b495295f19ae4 725 Gene3D G3DSA:1.10.8.630 74 185 9.2E-18 T 13-10-2018 RAM_14025 947bb46fa81f1d18832b495295f19ae4 725 Hamap MF_00983 Probable primosomal protein N' [priA]. 81 724 19.959 T 13-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 RAM_14025 947bb46fa81f1d18832b495295f19ae4 725 SUPERFAMILY SSF52540 244 322 6.38E-5 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_14025 947bb46fa81f1d18832b495295f19ae4 725 Gene3D G3DSA:3.40.50.300 213 380 2.4E-25 T 13-10-2018 RAM_47725 89473d269ced9f37e6954fd846316eea 256 Gene3D G3DSA:3.40.830.10 1 255 5.2E-79 T 13-10-2018 RAM_47725 89473d269ced9f37e6954fd846316eea 256 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 21 234 5.9E-45 T 13-10-2018 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 RAM_47725 89473d269ced9f37e6954fd846316eea 256 PIRSF PIRSF006157 1 256 5.6E-86 T 13-10-2018 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA-type GO:0008270|GO:0016701|GO:0055114 RAM_47725 89473d269ced9f37e6954fd846316eea 256 SUPERFAMILY SSF53213 3 252 3.92E-85 T 13-10-2018 RAM_41500 f567be6e737d0cf1539b555bf88ea96c 157 SUPERFAMILY SSF69118 20 152 1.28E-39 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_41500 f567be6e737d0cf1539b555bf88ea96c 157 Pfam PF02627 Carboxymuconolactone decarboxylase family 28 96 3.0E-19 T 13-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RAM_41500 f567be6e737d0cf1539b555bf88ea96c 157 Gene3D G3DSA:1.20.1290.10 1 149 1.0E-42 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_41500 f567be6e737d0cf1539b555bf88ea96c 157 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 30 80 8.4E-23 T 13-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RAM_12330 a35fc7d59a55620e56418ff7122f2feb 288 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 5.6E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_12330 a35fc7d59a55620e56418ff7122f2feb 288 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 5.6E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_12330 a35fc7d59a55620e56418ff7122f2feb 288 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 5.6E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_12330 a35fc7d59a55620e56418ff7122f2feb 288 SUPERFAMILY SSF51735 2 249 2.48E-65 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_12330 a35fc7d59a55620e56418ff7122f2feb 288 Gene3D G3DSA:3.40.50.720 1 288 3.0E-82 T 13-10-2018 RAM_12330 a35fc7d59a55620e56418ff7122f2feb 288 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 243 3.4E-44 T 13-10-2018 RAM_12330 a35fc7d59a55620e56418ff7122f2feb 288 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_12330 a35fc7d59a55620e56418ff7122f2feb 288 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 3.4E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_12330 a35fc7d59a55620e56418ff7122f2feb 288 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 3.4E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_12330 a35fc7d59a55620e56418ff7122f2feb 288 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 3.4E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_12330 a35fc7d59a55620e56418ff7122f2feb 288 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 3.4E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_12330 a35fc7d59a55620e56418ff7122f2feb 288 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 3.4E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_12330 a35fc7d59a55620e56418ff7122f2feb 288 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 218 0.0011 T 13-10-2018 RAM_18745 0d37ab929249491125f70f2380fbc50e 503 Gene3D G3DSA:3.40.50.12780 12 404 1.2E-88 T 13-10-2018 RAM_18745 0d37ab929249491125f70f2380fbc50e 503 Pfam PF00501 AMP-binding enzyme 16 409 3.7E-65 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_18745 0d37ab929249491125f70f2380fbc50e 503 ProSitePatterns PS00455 Putative AMP-binding domain signature. 158 169 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_18745 0d37ab929249491125f70f2380fbc50e 503 SUPERFAMILY SSF56801 10 500 3.01E-109 T 13-10-2018 RAM_18745 0d37ab929249491125f70f2380fbc50e 503 Gene3D G3DSA:3.30.300.30 405 502 9.6E-26 T 13-10-2018 RAM_18745 0d37ab929249491125f70f2380fbc50e 503 Pfam PF13193 AMP-binding enzyme C-terminal domain 418 488 2.5E-6 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_10330 d2d001c765c8a2954443b77895fae041 85 ProDom PD069408 TRANSMEMBRANE MEMBRANE RV2876/MT2944.1 CGL2017/CG2211 ML1584 POSSIBLE P20 12 58 2.0E-7 T 13-10-2018 IPR024341 Protein of unknown function DUF2631 RAM_10330 d2d001c765c8a2954443b77895fae041 85 Pfam PF10939 Protein of unknown function (DUF2631) 2 65 1.0E-29 T 13-10-2018 IPR024341 Protein of unknown function DUF2631 RAM_29065 ba3145e563b0303f3da5c121cdc3cd5b 194 SUPERFAMILY SSF52499 3 187 1.44E-34 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 RAM_29065 ba3145e563b0303f3da5c121cdc3cd5b 194 Gene3D G3DSA:3.40.50.850 2 194 9.9E-36 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 RAM_29065 ba3145e563b0303f3da5c121cdc3cd5b 194 Pfam PF00857 Isochorismatase family 12 166 2.4E-14 T 13-10-2018 IPR000868 Isochorismatase-like GO:0003824 RAM_31850 5a3932997c1c56f919a23721a926df46 496 Gene3D G3DSA:3.40.309.10 274 493 3.5E-73 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RAM_31850 5a3932997c1c56f919a23721a926df46 496 Pfam PF00171 Aldehyde dehydrogenase family 29 488 1.5E-159 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RAM_31850 5a3932997c1c56f919a23721a926df46 496 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 294 305 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 RAM_31850 5a3932997c1c56f919a23721a926df46 496 SUPERFAMILY SSF53720 14 493 3.27E-157 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RAM_31850 5a3932997c1c56f919a23721a926df46 496 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 266 273 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 RAM_31850 5a3932997c1c56f919a23721a926df46 496 Gene3D G3DSA:3.40.605.10 12 273 8.2E-96 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RAM_43225 ed75a925680a7c84f0afce80f6e61186 513 Gene3D G3DSA:3.50.50.60 25 390 7.7E-102 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_43225 ed75a925680a7c84f0afce80f6e61186 513 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 37 47 3.3E-29 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RAM_43225 ed75a925680a7c84f0afce80f6e61186 513 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 24 36 3.3E-29 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RAM_43225 ed75a925680a7c84f0afce80f6e61186 513 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 99 111 3.3E-29 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RAM_43225 ed75a925680a7c84f0afce80f6e61186 513 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 341 347 3.3E-29 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RAM_43225 ed75a925680a7c84f0afce80f6e61186 513 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 53 65 3.3E-29 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RAM_43225 ed75a925680a7c84f0afce80f6e61186 513 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 371 383 3.3E-29 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RAM_43225 ed75a925680a7c84f0afce80f6e61186 513 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 404 509 8.4E-18 T 13-10-2018 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RAM_43225 ed75a925680a7c84f0afce80f6e61186 513 SUPERFAMILY SSF51905 24 350 7.77E-34 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_43225 ed75a925680a7c84f0afce80f6e61186 513 Gene3D G3DSA:3.30.9.10 103 348 7.7E-102 T 13-10-2018 RAM_43225 ed75a925680a7c84f0afce80f6e61186 513 Pfam PF01266 FAD dependent oxidoreductase 25 382 9.8E-47 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RAM_43225 ed75a925680a7c84f0afce80f6e61186 513 ProSitePatterns PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1. 29 46 - T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RAM_43225 ed75a925680a7c84f0afce80f6e61186 513 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 376 386 - T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RAM_43225 ed75a925680a7c84f0afce80f6e61186 513 Gene3D G3DSA:1.10.8.870 421 510 2.3E-16 T 13-10-2018 IPR038299 Alpha-glycerophosphate oxidase, C-terminal domain superfamily KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RAM_26100 4d4827750ce99b6527d196c1cdad35af 299 Pfam PF13354 Beta-lactamase enzyme family 65 269 1.9E-36 T 13-10-2018 RAM_26100 4d4827750ce99b6527d196c1cdad35af 299 Gene3D G3DSA:3.40.710.10 34 298 1.7E-77 T 13-10-2018 RAM_26100 4d4827750ce99b6527d196c1cdad35af 299 ProSitePatterns PS00146 Beta-lactamase class-A active site. 77 92 - T 13-10-2018 IPR023650 Beta-lactamase, class-A active site KEGG: 00311+3.5.2.6 RAM_26100 4d4827750ce99b6527d196c1cdad35af 299 PRINTS PR00118 Beta-lactamase class A signature 177 202 1.2E-62 T 13-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 RAM_26100 4d4827750ce99b6527d196c1cdad35af 299 PRINTS PR00118 Beta-lactamase class A signature 213 228 1.2E-62 T 13-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 RAM_26100 4d4827750ce99b6527d196c1cdad35af 299 PRINTS PR00118 Beta-lactamase class A signature 75 92 1.2E-62 T 13-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 RAM_26100 4d4827750ce99b6527d196c1cdad35af 299 PRINTS PR00118 Beta-lactamase class A signature 115 140 1.2E-62 T 13-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 RAM_26100 4d4827750ce99b6527d196c1cdad35af 299 PRINTS PR00118 Beta-lactamase class A signature 151 175 1.2E-62 T 13-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 RAM_26100 4d4827750ce99b6527d196c1cdad35af 299 PRINTS PR00118 Beta-lactamase class A signature 230 245 1.2E-62 T 13-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 RAM_26100 4d4827750ce99b6527d196c1cdad35af 299 PRINTS PR00118 Beta-lactamase class A signature 44 68 1.2E-62 T 13-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 RAM_26100 4d4827750ce99b6527d196c1cdad35af 299 SUPERFAMILY SSF56601 45 295 2.58E-72 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_36255 b8340d2e0b86ecb7ee00bd7305d8e432 283 Pfam PF01061 ABC-2 type transporter 12 221 7.0E-16 T 13-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 RAM_36255 b8340d2e0b86ecb7ee00bd7305d8e432 283 PIRSF PIRSF006648 11 264 5.7E-15 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 RAM_11000 2e9ef21e5a53f0296ad1ac344fe1728f 333 Pfam PF04055 Radical SAM superfamily 81 234 2.8E-12 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RAM_11000 2e9ef21e5a53f0296ad1ac344fe1728f 333 PIRSF PIRSF005963 2 318 8.0E-121 T 13-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 RAM_11000 2e9ef21e5a53f0296ad1ac344fe1728f 333 TIGRFAM TIGR00510 lipA: lipoyl synthase 18 303 4.0E-99 T 13-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 RAM_11000 2e9ef21e5a53f0296ad1ac344fe1728f 333 Hamap MF_00206 Lipoyl synthase [lipA]. 1 307 138.926 T 13-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 RAM_11000 2e9ef21e5a53f0296ad1ac344fe1728f 333 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 24 60 6.3E-8 T 13-10-2018 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 RAM_11000 2e9ef21e5a53f0296ad1ac344fe1728f 333 Gene3D G3DSA:3.20.20.70 75 266 2.3E-15 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_11000 2e9ef21e5a53f0296ad1ac344fe1728f 333 SMART SM00729 71 277 1.2E-12 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 RAM_11000 2e9ef21e5a53f0296ad1ac344fe1728f 333 SUPERFAMILY SSF102114 35 296 2.88E-61 T 13-10-2018 RAM_30900 51d9c4ae7bcf67f0708edf1b37d8e0db 593 PIRSF PIRSF003128 1 578 1.9E-154 T 13-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 RAM_30900 51d9c4ae7bcf67f0708edf1b37d8e0db 593 Gene3D G3DSA:3.40.50.300 1 254 1.4E-34 T 13-10-2018 RAM_30900 51d9c4ae7bcf67f0708edf1b37d8e0db 593 Gene3D G3DSA:3.40.50.300 271 574 1.6E-53 T 13-10-2018 RAM_30900 51d9c4ae7bcf67f0708edf1b37d8e0db 593 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 573 2.9E-173 T 13-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 RAM_30900 51d9c4ae7bcf67f0708edf1b37d8e0db 593 SUPERFAMILY SSF52540 6 531 4.21E-24 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_30900 51d9c4ae7bcf67f0708edf1b37d8e0db 593 SUPERFAMILY SSF52540 2 221 1.71E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_30900 51d9c4ae7bcf67f0708edf1b37d8e0db 593 Pfam PF02463 RecF/RecN/SMC N terminal domain 14 529 1.3E-12 T 13-10-2018 IPR003395 RecF/RecN/SMC, N-terminal RAM_01725 246226b3a2d4424ae9601ea41883dfbb 426 Gene3D G3DSA:1.20.1090.10 196 423 1.7E-54 T 13-10-2018 RAM_01725 246226b3a2d4424ae9601ea41883dfbb 426 Pfam PF00465 Iron-containing alcohol dehydrogenase 17 415 3.6E-103 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 RAM_01725 246226b3a2d4424ae9601ea41883dfbb 426 Gene3D G3DSA:3.40.50.1970 2 195 1.5E-49 T 13-10-2018 RAM_01725 246226b3a2d4424ae9601ea41883dfbb 426 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 184 212 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 RAM_01725 246226b3a2d4424ae9601ea41883dfbb 426 SUPERFAMILY SSF56796 14 422 1.57E-97 T 13-10-2018 RAM_20430 1cb8698b7cfa15a0d7c4466b2e464228 415 SMART SM00825 Beta-ketoacyl synthase 11 406 2.2E-12 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RAM_20430 1cb8698b7cfa15a0d7c4466b2e464228 415 Gene3D G3DSA:3.40.47.10 263 404 3.6E-44 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_20430 1cb8698b7cfa15a0d7c4466b2e464228 415 SUPERFAMILY SSF53901 10 258 1.24E-64 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_20430 1cb8698b7cfa15a0d7c4466b2e464228 415 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 261 372 6.2E-31 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal RAM_20430 1cb8698b7cfa15a0d7c4466b2e464228 415 SUPERFAMILY SSF53901 221 413 9.84E-62 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_20430 1cb8698b7cfa15a0d7c4466b2e464228 415 PIRSF PIRSF000447 7 415 2.8E-137 T 13-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 RAM_20430 1cb8698b7cfa15a0d7c4466b2e464228 415 Gene3D G3DSA:3.40.47.10 2 262 6.9E-72 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_20430 1cb8698b7cfa15a0d7c4466b2e464228 415 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 10 251 3.7E-55 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal RAM_19450 e3b20f3f2e23a3970e804a4f2737827c 182 Gene3D G3DSA:3.10.450.50 3 143 6.3E-29 T 13-10-2018 RAM_19450 e3b20f3f2e23a3970e804a4f2737827c 182 Pfam PF13577 SnoaL-like domain 11 128 1.1E-20 T 13-10-2018 IPR037401 SnoaL-like domain RAM_19450 e3b20f3f2e23a3970e804a4f2737827c 182 SUPERFAMILY SSF54427 6 161 3.79E-31 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_36990 331853664f72434433ea6d8f4e57b71f 255 Pfam PF00378 Enoyl-CoA hydratase/isomerase 10 223 7.1E-37 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RAM_36990 331853664f72434433ea6d8f4e57b71f 255 SUPERFAMILY SSF52096 1 226 9.96E-56 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_36990 331853664f72434433ea6d8f4e57b71f 255 Gene3D G3DSA:3.90.226.10 1 238 2.9E-58 T 13-10-2018 RAM_42300 214f47171ea62255d6f42b96ee61ee48 288 SUPERFAMILY SSF51679 4 285 9.42E-47 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_42300 214f47171ea62255d6f42b96ee61ee48 288 Pfam PF00296 Luciferase-like monooxygenase 23 168 4.9E-26 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_42300 214f47171ea62255d6f42b96ee61ee48 288 TIGRFAM TIGR03621 F420_MSMEG_2516: probable F420-dependent oxidoreductase, MSMEG_2516 family 4 287 2.8E-82 T 13-10-2018 IPR019923 Luciferase-like, F420-dependent oxidoreductase, MSMEG2516, predicted RAM_42300 214f47171ea62255d6f42b96ee61ee48 288 Gene3D G3DSA:3.20.20.30 12 288 5.2E-45 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_40680 56a9793952df803f34f31b2e47eaca72 281 Gene3D G3DSA:3.40.50.720 1 255 1.2E-68 T 13-10-2018 RAM_40680 56a9793952df803f34f31b2e47eaca72 281 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 136 164 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_40680 56a9793952df803f34f31b2e47eaca72 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 76 87 1.0E-31 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_40680 56a9793952df803f34f31b2e47eaca72 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 170 187 1.0E-31 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_40680 56a9793952df803f34f31b2e47eaca72 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 149 168 1.0E-31 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_40680 56a9793952df803f34f31b2e47eaca72 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 194 214 1.0E-31 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_40680 56a9793952df803f34f31b2e47eaca72 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 123 139 1.0E-31 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_40680 56a9793952df803f34f31b2e47eaca72 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.0E-31 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_40680 56a9793952df803f34f31b2e47eaca72 281 SUPERFAMILY SSF51735 1 246 4.53E-69 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_40680 56a9793952df803f34f31b2e47eaca72 281 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 129 137 2.4E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_40680 56a9793952df803f34f31b2e47eaca72 281 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 76 87 2.4E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_40680 56a9793952df803f34f31b2e47eaca72 281 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 168 2.4E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_40680 56a9793952df803f34f31b2e47eaca72 281 Pfam PF00106 short chain dehydrogenase 6 192 5.0E-52 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_40680 56a9793952df803f34f31b2e47eaca72 281 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 181 0.0011 T 13-10-2018 RAM_26895 39c8d41951d12e194ea49c5a782b57ad 325 SUPERFAMILY SSF46689 217 267 4.66E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_26895 39c8d41951d12e194ea49c5a782b57ad 325 SMART SM00342 233 316 3.9E-26 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_26895 39c8d41951d12e194ea49c5a782b57ad 325 SUPERFAMILY SSF52317 5 198 2.12E-49 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_26895 39c8d41951d12e194ea49c5a782b57ad 325 SUPERFAMILY SSF46689 269 319 8.06E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_26895 39c8d41951d12e194ea49c5a782b57ad 325 Pfam PF01965 DJ-1/PfpI family 7 177 4.5E-26 T 13-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 RAM_26895 39c8d41951d12e194ea49c5a782b57ad 325 Pfam PF12833 Helix-turn-helix domain 239 317 1.4E-23 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_26895 39c8d41951d12e194ea49c5a782b57ad 325 Gene3D G3DSA:3.40.50.880 3 206 2.7E-62 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_26895 39c8d41951d12e194ea49c5a782b57ad 325 Gene3D G3DSA:1.10.10.60 214 322 7.9E-28 T 13-10-2018 RAM_17660 3f2941f4c8b3e39ded179414c8d1c5ab 481 Gene3D G3DSA:1.20.1720.10 18 222 5.0E-34 T 13-10-2018 RAM_17660 3f2941f4c8b3e39ded179414c8d1c5ab 481 Gene3D G3DSA:1.20.1250.20 261 473 3.4E-15 T 13-10-2018 RAM_17660 3f2941f4c8b3e39ded179414c8d1c5ab 481 SUPERFAMILY SSF103473 12 465 1.83E-55 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_17660 3f2941f4c8b3e39ded179414c8d1c5ab 481 Pfam PF07690 Major Facilitator Superfamily 22 416 2.8E-43 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_06455 3b976f691889048adbc52f64c25e734a 472 Gene3D G3DSA:3.60.110.10 206 432 2.9E-16 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily RAM_06455 3b976f691889048adbc52f64c25e734a 472 SUPERFAMILY SSF56317 217 440 5.62E-22 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily RAM_07575 65dd6e1e8ee385b11509d2dc5f734be7 128 Pfam PF01042 Endoribonuclease L-PSP 16 127 9.7E-17 T 13-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 RAM_07575 65dd6e1e8ee385b11509d2dc5f734be7 128 Gene3D G3DSA:3.30.1330.40 2 128 3.9E-23 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 RAM_07575 65dd6e1e8ee385b11509d2dc5f734be7 128 SUPERFAMILY SSF55298 1 127 1.19E-22 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 RAM_10295 ad5fe80d3d3eaf611ec2661f3db74f31 242 Pfam PF12697 Alpha/beta hydrolase family 16 235 4.8E-22 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_10295 ad5fe80d3d3eaf611ec2661f3db74f31 242 Gene3D G3DSA:3.40.50.1820 2 242 3.4E-42 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_10295 ad5fe80d3d3eaf611ec2661f3db74f31 242 SUPERFAMILY SSF53474 8 240 4.9E-34 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_10295 ad5fe80d3d3eaf611ec2661f3db74f31 242 PRINTS PR00111 Alpha/beta hydrolase fold signature 37 52 1.3E-5 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_10295 ad5fe80d3d3eaf611ec2661f3db74f31 242 PRINTS PR00111 Alpha/beta hydrolase fold signature 78 91 1.3E-5 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_03885 4df212b110037bd8bbe612820da8c046 97 Hamap MF_00580 10 kDa chaperonin [groS]. 4 97 26.133 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RAM_03885 4df212b110037bd8bbe612820da8c046 97 SUPERFAMILY SSF50129 3 97 6.88E-35 T 13-10-2018 IPR011032 GroES-like superfamily RAM_03885 4df212b110037bd8bbe612820da8c046 97 PRINTS PR00297 10kDa chaperonin signature 5 20 1.5E-30 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RAM_03885 4df212b110037bd8bbe612820da8c046 97 PRINTS PR00297 10kDa chaperonin signature 83 96 1.5E-30 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RAM_03885 4df212b110037bd8bbe612820da8c046 97 PRINTS PR00297 10kDa chaperonin signature 27 48 1.5E-30 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RAM_03885 4df212b110037bd8bbe612820da8c046 97 PRINTS PR00297 10kDa chaperonin signature 62 74 1.5E-30 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RAM_03885 4df212b110037bd8bbe612820da8c046 97 Pfam PF00166 Chaperonin 10 Kd subunit 4 96 1.4E-35 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RAM_03885 4df212b110037bd8bbe612820da8c046 97 ProSitePatterns PS00681 Chaperonins cpn10 signature. 5 29 - T 13-10-2018 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 RAM_03885 4df212b110037bd8bbe612820da8c046 97 SMART SM00883 4 96 8.6E-54 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RAM_03885 4df212b110037bd8bbe612820da8c046 97 Gene3D G3DSA:2.30.33.40 1 97 2.1E-38 T 13-10-2018 IPR037124 GroES chaperonin superfamily GO:0005737|GO:0006457 RAM_38515 d586b8e525877b6d05275090b709ea0a 219 Gene3D G3DSA:1.10.357.10 69 218 2.6E-28 T 13-10-2018 RAM_38515 d586b8e525877b6d05275090b709ea0a 219 Pfam PF02909 Tetracyclin repressor, C-terminal all-alpha domain 78 216 6.5E-14 T 13-10-2018 IPR004111 Tetracycline transcriptional regulator, TetR, C-terminal GO:0045892 RAM_38515 d586b8e525877b6d05275090b709ea0a 219 SUPERFAMILY SSF46689 8 72 2.67E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_38515 d586b8e525877b6d05275090b709ea0a 219 SUPERFAMILY SSF48498 79 218 3.67E-25 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_38515 d586b8e525877b6d05275090b709ea0a 219 Gene3D G3DSA:1.10.10.60 4 68 3.2E-25 T 13-10-2018 RAM_38515 d586b8e525877b6d05275090b709ea0a 219 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 58 2.7E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_38515 d586b8e525877b6d05275090b709ea0a 219 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 14 27 4.3E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_38515 d586b8e525877b6d05275090b709ea0a 219 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 35 58 4.3E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_38515 d586b8e525877b6d05275090b709ea0a 219 PRINTS PR00400 Tetracycline repressor protein signature 199 213 9.2E-12 T 13-10-2018 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 RAM_38515 d586b8e525877b6d05275090b709ea0a 219 PRINTS PR00400 Tetracycline repressor protein signature 81 100 9.2E-12 T 13-10-2018 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 RAM_38515 d586b8e525877b6d05275090b709ea0a 219 PRINTS PR00400 Tetracycline repressor protein signature 26 49 9.2E-12 T 13-10-2018 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 RAM_04455 d991e171f21adcaa0ecc3bae098feec4 277 SUPERFAMILY SSF161098 8 277 6.82E-58 T 13-10-2018 IPR035906 MetI-like superfamily RAM_04455 d991e171f21adcaa0ecc3bae098feec4 277 Gene3D G3DSA:1.10.3720.10 3 265 2.2E-48 T 13-10-2018 IPR035906 MetI-like superfamily RAM_04455 d991e171f21adcaa0ecc3bae098feec4 277 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 90 271 1.6E-9 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_38550 25a82cdecff8242d61787f7e7350e912 454 Gene3D G3DSA:3.40.50.12780 7 349 3.1E-65 T 13-10-2018 RAM_38550 25a82cdecff8242d61787f7e7350e912 454 Pfam PF00501 AMP-binding enzyme 17 358 2.2E-46 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_38550 25a82cdecff8242d61787f7e7350e912 454 ProSitePatterns PS00455 Putative AMP-binding domain signature. 130 141 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_38550 25a82cdecff8242d61787f7e7350e912 454 SUPERFAMILY SSF56801 13 452 4.45E-91 T 13-10-2018 RAM_38550 25a82cdecff8242d61787f7e7350e912 454 Gene3D G3DSA:3.30.300.30 350 454 1.7E-20 T 13-10-2018 RAM_38550 25a82cdecff8242d61787f7e7350e912 454 Pfam PF13193 AMP-binding enzyme C-terminal domain 370 442 1.0E-14 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_15600 587d22833b59f4ef7b9fc803d91f2e12 57 Gene3D G3DSA:2.115.10.20 1 56 4.2E-7 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily RAM_15600 587d22833b59f4ef7b9fc803d91f2e12 57 SUPERFAMILY SSF75005 2 53 1.15E-6 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily RAM_38590 a9d05b01eb4d2c1fb690f3642a4c813c 100 Gene3D G3DSA:2.60.120.10 7 99 3.3E-18 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_38590 a9d05b01eb4d2c1fb690f3642a4c813c 100 SUPERFAMILY SSF51182 25 93 5.2E-17 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RAM_38590 a9d05b01eb4d2c1fb690f3642a4c813c 100 Pfam PF07883 Cupin domain 27 81 3.4E-14 T 13-10-2018 IPR013096 Cupin 2, conserved barrel RAM_30055 95be289a6da602b89c8878d372fdc6c4 1121 SUPERFAMILY SSF52518 414 595 1.47E-13 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_30055 95be289a6da602b89c8878d372fdc6c4 1121 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 434 523 2.7E-7 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RAM_30055 95be289a6da602b89c8878d372fdc6c4 1121 Gene3D G3DSA:3.40.920.10 693 898 3.1E-20 T 13-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 RAM_30055 95be289a6da602b89c8878d372fdc6c4 1121 SUPERFAMILY SSF53323 696 893 4.18E-20 T 13-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 RAM_30055 95be289a6da602b89c8878d372fdc6c4 1121 SUPERFAMILY SSF52518 46 191 5.0E-11 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_30055 95be289a6da602b89c8878d372fdc6c4 1121 Gene3D G3DSA:3.40.50.970 6 215 8.2E-24 T 13-10-2018 RAM_30055 95be289a6da602b89c8878d372fdc6c4 1121 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 704 889 5.1E-23 T 13-10-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 RAM_30055 95be289a6da602b89c8878d372fdc6c4 1121 SUPERFAMILY SSF52922 261 383 1.41E-7 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RAM_02180 b7c959f25125e8d4e12d7accc020b7cb 203 Gene3D G3DSA:3.40.50.300 38 202 6.8E-25 T 13-10-2018 RAM_02180 b7c959f25125e8d4e12d7accc020b7cb 203 SUPERFAMILY SSF52540 41 202 6.82E-16 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_25220 c5b96161771117c945b55283b73f3045 430 Gene3D G3DSA:3.90.1720.10 216 430 4.9E-51 T 13-10-2018 RAM_25220 c5b96161771117c945b55283b73f3045 430 Pfam PF00877 NlpC/P60 family 306 413 1.5E-22 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain RAM_25220 c5b96161771117c945b55283b73f3045 430 SUPERFAMILY SSF54001 289 426 1.96E-29 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily RAM_28230 0af3ea13e9cd40135ac50010c593836e 167 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 23 100 7.7E-9 T 13-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RAM_28230 0af3ea13e9cd40135ac50010c593836e 167 Gene3D G3DSA:2.30.110.10 19 158 8.6E-27 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_28230 0af3ea13e9cd40135ac50010c593836e 167 SUPERFAMILY SSF50475 18 164 4.86E-23 T 13-10-2018 RAM_21785 354b89c9db50ac0d1c7adeac8062106d 296 Gene3D G3DSA:3.90.550.10 1 212 1.7E-33 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_21785 354b89c9db50ac0d1c7adeac8062106d 296 Pfam PF00535 Glycosyl transferase family 2 5 104 6.7E-19 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RAM_21785 354b89c9db50ac0d1c7adeac8062106d 296 SUPERFAMILY SSF53448 2 233 6.94E-40 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_27240 6121e536bb4a5f89ac92c8bf7c64da97 405 Gene3D G3DSA:3.20.20.140 54 376 4.1E-56 T 13-10-2018 RAM_27240 6121e536bb4a5f89ac92c8bf7c64da97 405 Pfam PF01979 Amidohydrolase family 50 388 4.5E-22 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RAM_27240 6121e536bb4a5f89ac92c8bf7c64da97 405 SUPERFAMILY SSF51556 54 364 1.11E-46 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_27240 6121e536bb4a5f89ac92c8bf7c64da97 405 SUPERFAMILY SSF51338 1 386 4.91E-13 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_27240 6121e536bb4a5f89ac92c8bf7c64da97 405 Gene3D G3DSA:2.30.40.10 6 399 4.1E-56 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_14175 48b0e85190d4082d2aadb000e745099d 145 Gene3D G3DSA:2.30.110.10 7 140 6.8E-22 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_14175 48b0e85190d4082d2aadb000e745099d 145 TIGRFAM TIGR03618 Rv1155_F420: PPOX class probable F420-dependent enzyme 11 138 2.0E-29 T 13-10-2018 IPR019920 F420-binding domain, putative RAM_14175 48b0e85190d4082d2aadb000e745099d 145 SUPERFAMILY SSF50475 1 117 5.8E-22 T 13-10-2018 RAM_14175 48b0e85190d4082d2aadb000e745099d 145 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 11 94 4.0E-11 T 13-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RAM_11380 c804473e590ebe2c54c91b06148a92fa 470 Gene3D G3DSA:3.40.50.12780 2 368 1.9E-70 T 13-10-2018 RAM_11380 c804473e590ebe2c54c91b06148a92fa 470 Pfam PF00501 AMP-binding enzyme 11 374 2.3E-56 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_11380 c804473e590ebe2c54c91b06148a92fa 470 ProSitePatterns PS00455 Putative AMP-binding domain signature. 140 151 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_11380 c804473e590ebe2c54c91b06148a92fa 470 SUPERFAMILY SSF56801 4 467 7.98E-98 T 13-10-2018 RAM_11380 c804473e590ebe2c54c91b06148a92fa 470 Pfam PF13193 AMP-binding enzyme C-terminal domain 384 458 1.4E-15 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_11380 c804473e590ebe2c54c91b06148a92fa 470 Gene3D G3DSA:3.30.300.30 369 469 1.7E-21 T 13-10-2018 RAM_00135 7394cdeaf6f0f3cafac13f2d8ba889a8 1037 Pfam PF03704 Bacterial transcriptional activator domain 95 235 2.5E-35 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_00135 7394cdeaf6f0f3cafac13f2d8ba889a8 1037 SMART SM00862 16 88 3.6E-8 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_00135 7394cdeaf6f0f3cafac13f2d8ba889a8 1037 Pfam PF00486 Transcriptional regulatory protein, C terminal 27 78 1.9E-7 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_00135 7394cdeaf6f0f3cafac13f2d8ba889a8 1037 SUPERFAMILY SSF46894 3 88 3.12E-12 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_00135 7394cdeaf6f0f3cafac13f2d8ba889a8 1037 Gene3D G3DSA:1.25.40.10 93 261 6.7E-44 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_00135 7394cdeaf6f0f3cafac13f2d8ba889a8 1037 Gene3D G3DSA:1.25.40.10 691 990 2.2E-12 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_00135 7394cdeaf6f0f3cafac13f2d8ba889a8 1037 SUPERFAMILY SSF52540 249 519 1.05E-16 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_00135 7394cdeaf6f0f3cafac13f2d8ba889a8 1037 Gene3D G3DSA:1.10.10.10 1 91 2.5E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_00135 7394cdeaf6f0f3cafac13f2d8ba889a8 1037 SMART SM01043 95 235 4.3E-44 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_00135 7394cdeaf6f0f3cafac13f2d8ba889a8 1037 SUPERFAMILY SSF48452 706 911 7.59E-11 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_00135 7394cdeaf6f0f3cafac13f2d8ba889a8 1037 SUPERFAMILY SSF48452 90 243 1.06E-26 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_00135 7394cdeaf6f0f3cafac13f2d8ba889a8 1037 PRINTS PR00364 Disease resistance protein signature 350 364 1.0E-4 T 13-10-2018 RAM_00135 7394cdeaf6f0f3cafac13f2d8ba889a8 1037 PRINTS PR00364 Disease resistance protein signature 453 467 1.0E-4 T 13-10-2018 RAM_00135 7394cdeaf6f0f3cafac13f2d8ba889a8 1037 PRINTS PR00364 Disease resistance protein signature 276 291 1.0E-4 T 13-10-2018 RAM_10200 703d258df0060e51d28d32bfa1a60309 94 Pfam PF02597 ThiS family 5 94 7.6E-17 T 13-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 RAM_10200 703d258df0060e51d28d32bfa1a60309 94 Gene3D G3DSA:3.10.20.30 1 94 1.1E-25 T 13-10-2018 IPR012675 Beta-grasp domain superfamily RAM_10200 703d258df0060e51d28d32bfa1a60309 94 SUPERFAMILY SSF54285 2 94 2.24E-19 T 13-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp RAM_21460 033dfddc5727d0e1fe65f42adb2b32ae 197 Gene3D G3DSA:2.60.120.10 83 181 2.2E-14 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_21460 033dfddc5727d0e1fe65f42adb2b32ae 197 SUPERFAMILY SSF51182 90 180 6.14E-20 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RAM_21460 033dfddc5727d0e1fe65f42adb2b32ae 197 SMART SM00530 15 70 4.9E-16 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_21460 033dfddc5727d0e1fe65f42adb2b32ae 197 SUPERFAMILY SSF47413 10 76 4.79E-17 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_21460 033dfddc5727d0e1fe65f42adb2b32ae 197 Gene3D G3DSA:1.10.260.40 10 82 1.4E-17 T 13-10-2018 RAM_21460 033dfddc5727d0e1fe65f42adb2b32ae 197 Pfam PF07883 Cupin domain 113 180 3.2E-14 T 13-10-2018 IPR013096 Cupin 2, conserved barrel RAM_21460 033dfddc5727d0e1fe65f42adb2b32ae 197 Pfam PF01381 Helix-turn-helix 16 70 2.6E-14 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_07030 319f4d8ca80db2d76adf0e924a4b65d8 218 SMART SM00448 1 120 1.8E-14 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_07030 319f4d8ca80db2d76adf0e924a4b65d8 218 SMART SM00421 148 205 6.5E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_07030 319f4d8ca80db2d76adf0e924a4b65d8 218 SUPERFAMILY SSF46894 132 200 3.74E-15 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_07030 319f4d8ca80db2d76adf0e924a4b65d8 218 SUPERFAMILY SSF52172 1 135 7.97E-23 T 13-10-2018 IPR011006 CheY-like superfamily RAM_07030 319f4d8ca80db2d76adf0e924a4b65d8 218 Gene3D G3DSA:3.40.50.2300 1 143 3.5E-26 T 13-10-2018 RAM_07030 319f4d8ca80db2d76adf0e924a4b65d8 218 Pfam PF00072 Response regulator receiver domain 3 108 4.8E-18 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_07030 319f4d8ca80db2d76adf0e924a4b65d8 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 151 165 7.9E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_07030 319f4d8ca80db2d76adf0e924a4b65d8 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 181 193 7.9E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_07030 319f4d8ca80db2d76adf0e924a4b65d8 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 165 181 7.9E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_07030 319f4d8ca80db2d76adf0e924a4b65d8 218 Gene3D G3DSA:1.10.10.10 144 216 1.6E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_07030 319f4d8ca80db2d76adf0e924a4b65d8 218 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 198 2.9E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_43045 ad1858668df2331f12256a5dcba93cf5 264 PIRSF PIRSF029755 1 263 2.6E-117 T 13-10-2018 IPR016938 Uncharacterised protein family UPF0317 RAM_43045 ad1858668df2331f12256a5dcba93cf5 264 Pfam PF07286 Protein of unknown function (DUF1445) 113 255 3.3E-66 T 13-10-2018 IPR009906 D-glutamate cyclase RAM_43045 ad1858668df2331f12256a5dcba93cf5 264 Gene3D G3DSA:3.40.1640.10 20 251 2.3E-93 T 13-10-2018 RAM_43045 ad1858668df2331f12256a5dcba93cf5 264 SUPERFAMILY SSF160920 9 255 9.02E-111 T 13-10-2018 IPR038021 Putative hydro-lyase RAM_43045 ad1858668df2331f12256a5dcba93cf5 264 Hamap MF_01830 Putative hydro-lyase . 11 263 52.43 T 13-10-2018 IPR016938 Uncharacterised protein family UPF0317 RAM_43045 ad1858668df2331f12256a5dcba93cf5 264 Gene3D G3DSA:3.30.2040.10 123 235 2.3E-93 T 13-10-2018 RAM_26165 ce6973d53a82090acbbc49bc3c23e7be 180 Gene3D G3DSA:3.40.430.10 1 171 1.7E-26 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RAM_26165 ce6973d53a82090acbbc49bc3c23e7be 180 Pfam PF01872 RibD C-terminal domain 3 168 3.7E-17 T 13-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 RAM_26165 ce6973d53a82090acbbc49bc3c23e7be 180 SUPERFAMILY SSF53597 3 165 5.63E-20 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RAM_17920 1f3561cf5773b7b78e9dce1a006d1de4 297 Pfam PF08338 Domain of unknown function (DUF1731) 249 294 1.6E-17 T 13-10-2018 IPR013549 Domain of unknown function DUF1731 RAM_17920 1f3561cf5773b7b78e9dce1a006d1de4 297 Gene3D G3DSA:3.40.50.720 2 285 4.9E-75 T 13-10-2018 RAM_17920 1f3561cf5773b7b78e9dce1a006d1de4 297 Pfam PF01370 NAD dependent epimerase/dehydratase family 4 212 1.4E-10 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 RAM_17920 1f3561cf5773b7b78e9dce1a006d1de4 297 TIGRFAM TIGR01777 yfcH: TIGR01777 family protein 4 292 1.3E-87 T 13-10-2018 IPR010099 Epimerase family protein SDR39U1 RAM_17920 1f3561cf5773b7b78e9dce1a006d1de4 297 SUPERFAMILY SSF51735 5 291 1.48E-38 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_03140 75a7543d1b85ca673cd5f01da2ce838a 255 Gene3D G3DSA:3.40.50.720 4 81 1.8E-5 T 13-10-2018 RAM_03140 75a7543d1b85ca673cd5f01da2ce838a 255 SUPERFAMILY SSF55347 81 194 2.18E-10 T 13-10-2018 RAM_03140 75a7543d1b85ca673cd5f01da2ce838a 255 SUPERFAMILY SSF51735 21 101 4.47E-9 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_03140 75a7543d1b85ca673cd5f01da2ce838a 255 Gene3D G3DSA:3.30.360.10 82 255 1.1E-20 T 13-10-2018 RAM_42315 2261a56bc05125d765da42225fd03440 199 TIGRFAM TIGR00731 bL25_bact_ctc: ribosomal protein bL25, Ctc-form 6 176 4.9E-50 T 13-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 RAM_42315 2261a56bc05125d765da42225fd03440 199 Hamap MF_01334 50S ribosomal protein L25 [rplY]. 4 180 25.545 T 13-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 RAM_42315 2261a56bc05125d765da42225fd03440 199 Pfam PF14693 Ribosomal protein TL5, C-terminal domain 100 180 4.8E-20 T 13-10-2018 IPR020057 Ribosomal protein L25, beta domain RAM_42315 2261a56bc05125d765da42225fd03440 199 Pfam PF01386 Ribosomal L25p family 6 92 1.0E-24 T 13-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 RAM_42315 2261a56bc05125d765da42225fd03440 199 Gene3D G3DSA:2.170.120.20 96 180 4.6E-18 T 13-10-2018 IPR037121 Ribosomal protein L25, C-terminal RAM_42315 2261a56bc05125d765da42225fd03440 199 SUPERFAMILY SSF50715 10 179 1.1E-48 T 13-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 RAM_42315 2261a56bc05125d765da42225fd03440 199 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 11 91 2.0E-19 T 13-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 RAM_42315 2261a56bc05125d765da42225fd03440 199 Gene3D G3DSA:2.40.240.10 2 95 3.6E-25 T 13-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 RAM_34995 38dde2e624280f8ff7937a6c92b76bb2 123 Gene3D G3DSA:2.160.10.10 13 119 1.9E-7 T 13-10-2018 RAM_34995 38dde2e624280f8ff7937a6c92b76bb2 123 SUPERFAMILY SSF51161 21 114 2.77E-8 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily RAM_25580 737646141ac1583b89433aa047394ab1 236 SUPERFAMILY SSF56281 25 222 1.16E-43 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_25580 737646141ac1583b89433aa047394ab1 236 Pfam PF00753 Metallo-beta-lactamase superfamily 28 202 1.1E-13 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_25580 737646141ac1583b89433aa047394ab1 236 Gene3D G3DSA:3.60.15.10 17 233 4.0E-54 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_25580 737646141ac1583b89433aa047394ab1 236 SMART SM00849 27 202 2.3E-31 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_29045 4518ce0b80933087557d3e2dfcd58034 410 Pfam PF04542 Sigma-70 region 2 11 75 2.3E-12 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_29045 4518ce0b80933087557d3e2dfcd58034 410 SUPERFAMILY SSF88659 106 164 1.85E-7 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_29045 4518ce0b80933087557d3e2dfcd58034 410 SUPERFAMILY SSF88946 7 78 1.14E-14 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_29045 4518ce0b80933087557d3e2dfcd58034 410 Gene3D G3DSA:1.10.1740.10 3 72 9.6E-10 T 13-10-2018 RAM_29045 4518ce0b80933087557d3e2dfcd58034 410 Gene3D G3DSA:1.25.40.10 202 409 1.1E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_41270 1e0d90e3ac71e7a99d501626f6a0c82e 339 SUPERFAMILY SSF52374 4 336 3.24E-69 T 13-10-2018 RAM_41270 1e0d90e3ac71e7a99d501626f6a0c82e 339 Gene3D G3DSA:1.10.240.10 198 306 5.4E-99 T 13-10-2018 RAM_41270 1e0d90e3ac71e7a99d501626f6a0c82e 339 Pfam PF00579 tRNA synthetases class I (W and Y) 4 293 4.1E-55 T 13-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 RAM_41270 1e0d90e3ac71e7a99d501626f6a0c82e 339 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 4 337 8.9E-77 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 RAM_41270 1e0d90e3ac71e7a99d501626f6a0c82e 339 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 154 175 6.9E-17 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 RAM_41270 1e0d90e3ac71e7a99d501626f6a0c82e 339 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 207 217 6.9E-17 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 RAM_41270 1e0d90e3ac71e7a99d501626f6a0c82e 339 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 13 29 6.9E-17 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 RAM_41270 1e0d90e3ac71e7a99d501626f6a0c82e 339 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 62 81 6.9E-17 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 RAM_41270 1e0d90e3ac71e7a99d501626f6a0c82e 339 Gene3D G3DSA:3.40.50.620 4 337 5.4E-99 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAM_43735 7316b03a5c2c5260aa87c2d77d49ca39 306 Gene3D G3DSA:3.40.980.10 1 159 7.5E-48 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily RAM_43735 7316b03a5c2c5260aa87c2d77d49ca39 306 Gene3D G3DSA:3.90.1170.40 161 305 7.7E-44 T 13-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 RAM_43735 7316b03a5c2c5260aa87c2d77d49ca39 306 SMART SM00852 6 148 3.8E-13 T 13-10-2018 IPR001453 MoaB/Mog domain RAM_43735 7316b03a5c2c5260aa87c2d77d49ca39 306 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 4 139 4.7E-26 T 13-10-2018 IPR001453 MoaB/Mog domain RAM_43735 7316b03a5c2c5260aa87c2d77d49ca39 306 Pfam PF02391 MoaE protein 174 286 4.7E-33 T 13-10-2018 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 RAM_43735 7316b03a5c2c5260aa87c2d77d49ca39 306 SUPERFAMILY SSF53218 4 152 7.2E-36 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily RAM_43735 7316b03a5c2c5260aa87c2d77d49ca39 306 ProSitePatterns PS01078 Molybdenum cofactor biosynthesis proteins signature 1. 64 77 - T 13-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 RAM_43735 7316b03a5c2c5260aa87c2d77d49ca39 306 SUPERFAMILY SSF54690 173 304 3.92E-37 T 13-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 RAM_43735 7316b03a5c2c5260aa87c2d77d49ca39 306 Pfam PF00994 Probable molybdopterin binding domain 7 140 6.1E-24 T 13-10-2018 IPR001453 MoaB/Mog domain RAM_22185 5d88eb0dcfb31f826f5e96ef0fcc5fd2 256 SMART SM00240 22 72 2.6E-12 T 13-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 RAM_22185 5d88eb0dcfb31f826f5e96ef0fcc5fd2 256 Pfam PF00498 FHA domain 23 89 2.0E-17 T 13-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 RAM_22185 5d88eb0dcfb31f826f5e96ef0fcc5fd2 256 SUPERFAMILY SSF49879 12 95 1.72E-25 T 13-10-2018 IPR008984 SMAD/FHA domain superfamily GO:0005515 RAM_22185 5d88eb0dcfb31f826f5e96ef0fcc5fd2 256 Gene3D G3DSA:2.60.200.20 4 106 9.6E-24 T 13-10-2018 RAM_44525 3dd4126fa1c84a1e5ad17945207f2885 452 SUPERFAMILY SSF52540 69 289 1.63E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_44525 3dd4126fa1c84a1e5ad17945207f2885 452 Pfam PF13481 AAA domain 61 218 2.6E-15 T 13-10-2018 RAM_44525 3dd4126fa1c84a1e5ad17945207f2885 452 Hamap MF_01498 DNA repair protein RadA [radA]. 20 449 42.409 T 13-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 RAM_44525 3dd4126fa1c84a1e5ad17945207f2885 452 SUPERFAMILY SSF54211 251 448 1.4E-30 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RAM_44525 3dd4126fa1c84a1e5ad17945207f2885 452 PRINTS PR01874 DNA repair protein radA signature 170 194 4.2E-84 T 13-10-2018 RAM_44525 3dd4126fa1c84a1e5ad17945207f2885 452 PRINTS PR01874 DNA repair protein radA signature 9 33 4.2E-84 T 13-10-2018 RAM_44525 3dd4126fa1c84a1e5ad17945207f2885 452 PRINTS PR01874 DNA repair protein radA signature 209 237 4.2E-84 T 13-10-2018 RAM_44525 3dd4126fa1c84a1e5ad17945207f2885 452 PRINTS PR01874 DNA repair protein radA signature 244 270 4.2E-84 T 13-10-2018 RAM_44525 3dd4126fa1c84a1e5ad17945207f2885 452 PRINTS PR01874 DNA repair protein radA signature 78 106 4.2E-84 T 13-10-2018 RAM_44525 3dd4126fa1c84a1e5ad17945207f2885 452 PRINTS PR01874 DNA repair protein radA signature 318 341 4.2E-84 T 13-10-2018 RAM_44525 3dd4126fa1c84a1e5ad17945207f2885 452 PRINTS PR01874 DNA repair protein radA signature 120 137 4.2E-84 T 13-10-2018 RAM_44525 3dd4126fa1c84a1e5ad17945207f2885 452 SMART SM00382 86 240 1.5E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_44525 3dd4126fa1c84a1e5ad17945207f2885 452 Gene3D G3DSA:3.40.50.300 64 275 4.0E-41 T 13-10-2018 RAM_44525 3dd4126fa1c84a1e5ad17945207f2885 452 Gene3D G3DSA:3.30.230.10 326 449 6.3E-10 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RAM_44525 3dd4126fa1c84a1e5ad17945207f2885 452 TIGRFAM TIGR00416 sms: DNA repair protein RadA 2 445 2.3E-159 T 13-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 RAM_15225 d4cdbf61206fd34bff4ddaa92897596b 407 Pfam PF13556 PucR C-terminal helix-turn-helix domain 335 393 9.2E-20 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain RAM_15225 d4cdbf61206fd34bff4ddaa92897596b 407 Gene3D G3DSA:1.10.10.2840 267 396 6.4E-25 T 13-10-2018 RAM_16625 1d358d0f2665e009d531387f9c6176a6 664 Pfam PF13193 AMP-binding enzyme C-terminal domain 547 623 9.9E-6 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_16625 1d358d0f2665e009d531387f9c6176a6 664 Pfam PF00501 AMP-binding enzyme 94 534 3.0E-55 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_16625 1d358d0f2665e009d531387f9c6176a6 664 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 33 89 1.5E-11 T 13-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 RAM_16625 1d358d0f2665e009d531387f9c6176a6 664 ProSitePatterns PS00455 Putative AMP-binding domain signature. 278 289 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_16625 1d358d0f2665e009d531387f9c6176a6 664 SUPERFAMILY SSF56801 30 636 3.01E-125 T 13-10-2018 RAM_16625 1d358d0f2665e009d531387f9c6176a6 664 Gene3D G3DSA:3.40.50.12780 77 529 2.5E-67 T 13-10-2018 RAM_16625 1d358d0f2665e009d531387f9c6176a6 664 TIGRFAM TIGR01217 ac_ac_CoA_syn: acetoacetate-CoA ligase 8 659 7.9E-226 T 13-10-2018 IPR005914 Acetoacetyl-CoA synthase GO:0006629|GO:0030729 KEGG: 00280+6.2.1.16|KEGG: 00650+6.2.1.16|Reactome: R-HSA-77111 RAM_16625 1d358d0f2665e009d531387f9c6176a6 664 Gene3D G3DSA:3.30.300.30 532 651 2.8E-13 T 13-10-2018 RAM_24815 a787b6b9d0ec5d4d9cef0a26bec48918 417 Pfam PF13527 Acetyltransferase (GNAT) domain 18 143 2.1E-22 T 13-10-2018 RAM_24815 a787b6b9d0ec5d4d9cef0a26bec48918 417 Gene3D G3DSA:3.40.630.30 13 146 4.4E-29 T 13-10-2018 RAM_24815 a787b6b9d0ec5d4d9cef0a26bec48918 417 Gene3D G3DSA:3.30.1050.10 315 408 7.7E-22 T 13-10-2018 IPR036527 SCP2 sterol-binding domain superfamily RAM_24815 a787b6b9d0ec5d4d9cef0a26bec48918 417 Pfam PF13530 Sterol carrier protein domain 192 413 1.2E-51 T 13-10-2018 IPR025559 Enhanced intracellular survival protein domain RAM_24815 a787b6b9d0ec5d4d9cef0a26bec48918 417 Gene3D G3DSA:3.40.630.30 148 308 2.1E-36 T 13-10-2018 RAM_24815 a787b6b9d0ec5d4d9cef0a26bec48918 417 SUPERFAMILY SSF55729 17 314 6.54E-48 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_24815 a787b6b9d0ec5d4d9cef0a26bec48918 417 Hamap MF_01812 N-acetyltransferase Eis [eis]. 15 417 30.812 T 13-10-2018 IPR022902 N-acetyltransferase Eis RAM_24815 a787b6b9d0ec5d4d9cef0a26bec48918 417 SUPERFAMILY SSF55718 316 417 5.89E-19 T 13-10-2018 IPR036527 SCP2 sterol-binding domain superfamily RAM_14950 6bbec5a048da9fe393d34d7122362d30 1086 SUPERFAMILY SSF52743 180 475 1.07E-80 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RAM_14950 6bbec5a048da9fe393d34d7122362d30 1086 Gene3D G3DSA:3.40.50.200 174 478 1.3E-93 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RAM_14950 6bbec5a048da9fe393d34d7122362d30 1086 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 419 429 - T 13-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site RAM_14950 6bbec5a048da9fe393d34d7122362d30 1086 Pfam PF00082 Subtilase family 199 466 7.4E-55 T 13-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RAM_14950 6bbec5a048da9fe393d34d7122362d30 1086 PRINTS PR00723 Subtilisin serine protease family (S8) signature 237 250 1.6E-21 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related RAM_14950 6bbec5a048da9fe393d34d7122362d30 1086 PRINTS PR00723 Subtilisin serine protease family (S8) signature 418 434 1.6E-21 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related RAM_14950 6bbec5a048da9fe393d34d7122362d30 1086 PRINTS PR00723 Subtilisin serine protease family (S8) signature 199 218 1.6E-21 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related RAM_14950 6bbec5a048da9fe393d34d7122362d30 1086 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 241 251 - T 13-10-2018 IPR022398 Peptidase S8, subtilisin, His-active site RAM_14950 6bbec5a048da9fe393d34d7122362d30 1086 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 204 215 - T 13-10-2018 IPR023827 Peptidase S8, subtilisin, Asp-active site RAM_19240 4def6cfa9e7a7d486d0b677ed102f29e 313 Pfam PF14417 MEDS: MEthanogen/methylotroph, DcmR Sensory domain 6 151 4.3E-20 T 13-10-2018 IPR025847 MEDS domain RAM_09305 723e0587d0f563332075eac130750fa8 401 SUPERFAMILY SSF103473 6 396 1.44E-59 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_09305 723e0587d0f563332075eac130750fa8 401 Gene3D G3DSA:1.20.1720.10 18 395 2.8E-105 T 13-10-2018 RAM_09305 723e0587d0f563332075eac130750fa8 401 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 16 395 1.6E-99 T 13-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 RAM_09305 723e0587d0f563332075eac130750fa8 401 Pfam PF07690 Major Facilitator Superfamily 26 362 1.9E-40 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_09305 723e0587d0f563332075eac130750fa8 401 ProSitePatterns PS00216 Sugar transport proteins signature 1. 72 88 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RAM_09305 723e0587d0f563332075eac130750fa8 401 PRINTS PR00173 Glutamate-aspartate symporter signature 305 324 3.4E-6 T 13-10-2018 RAM_09305 723e0587d0f563332075eac130750fa8 401 PRINTS PR00173 Glutamate-aspartate symporter signature 135 160 3.4E-6 T 13-10-2018 RAM_09305 723e0587d0f563332075eac130750fa8 401 PRINTS PR00173 Glutamate-aspartate symporter signature 51 71 3.4E-6 T 13-10-2018 RAM_09305 723e0587d0f563332075eac130750fa8 401 PRINTS PR00173 Glutamate-aspartate symporter signature 259 281 3.4E-6 T 13-10-2018 RAM_22450 88c38508017133b5981bd2352cf3ab4f 481 Pfam PF09362 Domain of unknown function (DUF1996) 306 459 6.7E-20 T 13-10-2018 IPR018535 Domain of unknown function DUF1996 RAM_04230 1ab40e973670db28fe5f383772cb91fe 137 Gene3D G3DSA:3.40.1490.10 3 137 2.5E-56 T 13-10-2018 IPR023476 Peptidyl-tRNA hydrolase II domain superfamily MetaCyc: PWY-6308 RAM_04230 1ab40e973670db28fe5f383772cb91fe 137 SUPERFAMILY SSF102462 4 136 3.82E-45 T 13-10-2018 IPR023476 Peptidyl-tRNA hydrolase II domain superfamily MetaCyc: PWY-6308 RAM_04230 1ab40e973670db28fe5f383772cb91fe 137 Pfam PF09391 Protein of unknown function (DUF2000) 6 136 8.3E-43 T 13-10-2018 IPR018988 Protein of unknown function DUF2000 RAM_29645 c572475d07c4523e22f46f6014581d42 236 Gene3D G3DSA:3.60.130.10 2 235 2.8E-41 T 13-10-2018 RAM_29645 c572475d07c4523e22f46f6014581d42 236 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 172 222 3.0E-12 T 13-10-2018 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 RAM_29645 c572475d07c4523e22f46f6014581d42 236 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 8 125 3.1E-11 T 13-10-2018 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 RAM_29645 c572475d07c4523e22f46f6014581d42 236 SUPERFAMILY SSF51197 7 224 5.1E-36 T 13-10-2018 RAM_30380 aa69fe80b0ceed23e4f4cb54c76e911f 288 Gene3D G3DSA:1.10.260.40 7 75 1.2E-7 T 13-10-2018 RAM_30380 aa69fe80b0ceed23e4f4cb54c76e911f 288 SMART SM00530 14 69 5.8E-6 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_30380 aa69fe80b0ceed23e4f4cb54c76e911f 288 SUPERFAMILY SSF47413 8 69 2.73E-7 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_30380 aa69fe80b0ceed23e4f4cb54c76e911f 288 Pfam PF13560 Helix-turn-helix domain 11 70 4.1E-10 T 13-10-2018 RAM_08190 24852d9ca1ccae6cfaa96364ca6fe97d 270 Gene3D G3DSA:3.40.50.300 6 268 1.0E-52 T 13-10-2018 RAM_08190 24852d9ca1ccae6cfaa96364ca6fe97d 270 SUPERFAMILY SSF52540 10 247 1.5E-43 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_08190 24852d9ca1ccae6cfaa96364ca6fe97d 270 Pfam PF00005 ABC transporter 31 181 1.2E-24 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_08190 24852d9ca1ccae6cfaa96364ca6fe97d 270 SMART SM00382 39 240 2.7E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_23700 a16a9010f79fd34550e59a6e05a69131 610 PIRSF PIRSF002741 12 556 2.0E-95 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RAM_23700 a16a9010f79fd34550e59a6e05a69131 610 Gene3D G3DSA:3.40.190.10 6 288 8.4E-69 T 13-10-2018 RAM_23700 a16a9010f79fd34550e59a6e05a69131 610 SUPERFAMILY SSF53850 38 544 1.74E-119 T 13-10-2018 RAM_23700 a16a9010f79fd34550e59a6e05a69131 610 Gene3D G3DSA:3.10.105.10 303 525 3.2E-46 T 13-10-2018 RAM_23700 a16a9010f79fd34550e59a6e05a69131 610 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 87 461 7.7E-84 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain RAM_46105 6f085942f61ab2f4a9766163e35c9475 376 SUPERFAMILY SSF51395 19 328 4.58E-81 T 13-10-2018 RAM_46105 6f085942f61ab2f4a9766163e35c9475 376 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 12 330 6.7E-118 T 13-10-2018 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 RAM_46105 6f085942f61ab2f4a9766163e35c9475 376 Gene3D G3DSA:3.20.20.70 16 256 8.0E-76 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_46105 6f085942f61ab2f4a9766163e35c9475 376 Gene3D G3DSA:1.10.1200.80 265 331 1.1E-9 T 13-10-2018 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 RAM_46105 6f085942f61ab2f4a9766163e35c9475 376 Pfam PF01207 Dihydrouridine synthase (Dus) 22 323 5.5E-102 T 13-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 RAM_46105 6f085942f61ab2f4a9766163e35c9475 376 PIRSF PIRSF006621 9 341 5.6E-108 T 13-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 RAM_04775 64b7d1250ea432e913e37759df979de5 439 Pfam PF00375 Sodium:dicarboxylate symporter family 4 405 1.5E-93 T 13-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 RAM_04775 64b7d1250ea432e913e37759df979de5 439 Gene3D G3DSA:1.10.3860.10 1 422 7.8E-105 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 RAM_04775 64b7d1250ea432e913e37759df979de5 439 SUPERFAMILY SSF118215 4 407 6.02E-87 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 RAM_04775 64b7d1250ea432e913e37759df979de5 439 PRINTS PR00173 Glutamate-aspartate symporter signature 295 321 4.4E-22 T 13-10-2018 RAM_04775 64b7d1250ea432e913e37759df979de5 439 PRINTS PR00173 Glutamate-aspartate symporter signature 75 100 4.4E-22 T 13-10-2018 RAM_04775 64b7d1250ea432e913e37759df979de5 439 PRINTS PR00173 Glutamate-aspartate symporter signature 42 62 4.4E-22 T 13-10-2018 RAM_04775 64b7d1250ea432e913e37759df979de5 439 PRINTS PR00173 Glutamate-aspartate symporter signature 356 376 4.4E-22 T 13-10-2018 RAM_04775 64b7d1250ea432e913e37759df979de5 439 PRINTS PR00173 Glutamate-aspartate symporter signature 228 247 4.4E-22 T 13-10-2018 RAM_04775 64b7d1250ea432e913e37759df979de5 439 PRINTS PR00173 Glutamate-aspartate symporter signature 330 349 4.4E-22 T 13-10-2018 RAM_04775 64b7d1250ea432e913e37759df979de5 439 PRINTS PR00173 Glutamate-aspartate symporter signature 193 212 4.4E-22 T 13-10-2018 RAM_25440 2c15a2e313b5b42badc43f1e2631e3cf 267 SUPERFAMILY SSF52096 2 266 9.96E-74 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_25440 2c15a2e313b5b42badc43f1e2631e3cf 267 Gene3D G3DSA:1.10.12.10 209 266 2.1E-20 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal RAM_25440 2c15a2e313b5b42badc43f1e2631e3cf 267 Pfam PF00378 Enoyl-CoA hydratase/isomerase 7 266 1.9E-46 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RAM_25440 2c15a2e313b5b42badc43f1e2631e3cf 267 Gene3D G3DSA:3.90.226.10 1 208 3.1E-60 T 13-10-2018 RAM_22845 bf0d1e39a1d3df2e26ad394ef7317e4d 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 166 1.7E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_22845 bf0d1e39a1d3df2e26ad394ef7317e4d 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 1.7E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_22845 bf0d1e39a1d3df2e26ad394ef7317e4d 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 185 1.7E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_22845 bf0d1e39a1d3df2e26ad394ef7317e4d 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 121 137 1.7E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_22845 bf0d1e39a1d3df2e26ad394ef7317e4d 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 74 85 1.7E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_22845 bf0d1e39a1d3df2e26ad394ef7317e4d 276 Gene3D G3DSA:3.40.50.720 4 263 5.6E-71 T 13-10-2018 RAM_22845 bf0d1e39a1d3df2e26ad394ef7317e4d 276 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 178 1.8E-5 T 13-10-2018 RAM_22845 bf0d1e39a1d3df2e26ad394ef7317e4d 276 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 166 3.4E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_22845 bf0d1e39a1d3df2e26ad394ef7317e4d 276 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 127 135 3.4E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_22845 bf0d1e39a1d3df2e26ad394ef7317e4d 276 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 74 85 3.4E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_22845 bf0d1e39a1d3df2e26ad394ef7317e4d 276 SUPERFAMILY SSF51735 5 254 3.12E-59 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_22845 bf0d1e39a1d3df2e26ad394ef7317e4d 276 Pfam PF00106 short chain dehydrogenase 6 189 1.8E-44 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_05860 0cf4d46fd8950309ce281b59040e02ab 452 Gene3D G3DSA:3.40.190.10 164 424 1.9E-66 T 13-10-2018 RAM_05860 0cf4d46fd8950309ce281b59040e02ab 452 Gene3D G3DSA:3.40.190.10 74 406 1.9E-66 T 13-10-2018 RAM_05860 0cf4d46fd8950309ce281b59040e02ab 452 SUPERFAMILY SSF53850 25 448 2.0E-61 T 13-10-2018 RAM_05860 0cf4d46fd8950309ce281b59040e02ab 452 Pfam PF13416 Bacterial extracellular solute-binding protein 73 388 2.6E-31 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein RAM_37635 e2998df8d942700f836dfbdc48847193 369 SMART SM00530 10 73 3.0E-5 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_37635 e2998df8d942700f836dfbdc48847193 369 Pfam PF06114 IrrE N-terminal-like domain 171 277 3.1E-16 T 13-10-2018 IPR010359 IrrE N-terminal-like domain RAM_37635 e2998df8d942700f836dfbdc48847193 369 Gene3D G3DSA:1.10.260.40 11 75 2.6E-7 T 13-10-2018 RAM_37635 e2998df8d942700f836dfbdc48847193 369 Pfam PF01381 Helix-turn-helix 14 72 2.6E-5 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_37635 e2998df8d942700f836dfbdc48847193 369 SUPERFAMILY SSF47413 10 74 2.49E-5 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_37635 e2998df8d942700f836dfbdc48847193 369 Gene3D G3DSA:3.40.390.50 158 240 5.9E-6 T 13-10-2018 RAM_08885 dbfcc9d703ebcdedb55a39f6dc5497fb 265 SUPERFAMILY SSF53474 3 257 9.45E-36 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_08885 dbfcc9d703ebcdedb55a39f6dc5497fb 265 Pfam PF12697 Alpha/beta hydrolase family 22 244 1.4E-17 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_08885 dbfcc9d703ebcdedb55a39f6dc5497fb 265 Gene3D G3DSA:3.40.50.1820 1 256 8.6E-59 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_20090 7652e28fce7fc15775f8e955567422ba 177 Pfam PF07291 Methylamine utilisation protein MauE 7 171 2.0E-5 T 13-10-2018 IPR009908 Methylamine utilisation protein, MauE GO:0016021|GO:0030416 RAM_13800 88e7f7a13b42e6094966778bc8da89b2 133 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 1 124 14.117 T 13-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 RAM_13800 88e7f7a13b42e6094966778bc8da89b2 133 Pfam PF03652 Holliday junction resolvase 1 121 1.4E-32 T 13-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 RAM_13800 88e7f7a13b42e6094966778bc8da89b2 133 Gene3D G3DSA:3.30.420.140 1 131 4.8E-34 T 13-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 RAM_13800 88e7f7a13b42e6094966778bc8da89b2 133 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 1 121 7.2E-22 T 13-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 RAM_13800 88e7f7a13b42e6094966778bc8da89b2 133 SMART SM00732 1 89 1.8E-7 T 13-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 RAM_13800 88e7f7a13b42e6094966778bc8da89b2 133 SUPERFAMILY SSF53098 1 122 1.71E-25 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily RAM_44955 22a410781c3fb3e0e2ff9899789a28e3 401 ProSitePatterns PS00132 Zinc carboxypeptidases, zinc-binding region 1 signature. 152 174 - T 13-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 RAM_44955 22a410781c3fb3e0e2ff9899789a28e3 401 ProSitePatterns PS00133 Zinc carboxypeptidases, zinc-binding region 2 signature. 290 300 - T 13-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 RAM_44955 22a410781c3fb3e0e2ff9899789a28e3 401 PRINTS PR00765 Carboxypeptidase A metalloprotease (M14) family signature 287 300 6.7E-11 T 13-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 RAM_44955 22a410781c3fb3e0e2ff9899789a28e3 401 PRINTS PR00765 Carboxypeptidase A metalloprotease (M14) family signature 127 139 6.7E-11 T 13-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 RAM_44955 22a410781c3fb3e0e2ff9899789a28e3 401 PRINTS PR00765 Carboxypeptidase A metalloprotease (M14) family signature 152 166 6.7E-11 T 13-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 RAM_44955 22a410781c3fb3e0e2ff9899789a28e3 401 PRINTS PR00765 Carboxypeptidase A metalloprotease (M14) family signature 228 236 6.7E-11 T 13-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 RAM_44955 22a410781c3fb3e0e2ff9899789a28e3 401 SUPERFAMILY SSF53187 98 399 4.89E-81 T 13-10-2018 RAM_44955 22a410781c3fb3e0e2ff9899789a28e3 401 Gene3D G3DSA:3.40.630.10 95 400 1.6E-100 T 13-10-2018 RAM_44955 22a410781c3fb3e0e2ff9899789a28e3 401 SMART SM00631 101 386 2.2E-91 T 13-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 RAM_44955 22a410781c3fb3e0e2ff9899789a28e3 401 Pfam PF00246 Zinc carboxypeptidase 111 387 3.0E-68 T 13-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 RAM_15005 1cf0aa563c995ad953f9a5491ca5bb5a 422 SUPERFAMILY SSF51905 7 418 1.94E-43 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_15005 1cf0aa563c995ad953f9a5491ca5bb5a 422 Gene3D G3DSA:3.50.50.60 10 282 1.6E-25 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_15005 1cf0aa563c995ad953f9a5491ca5bb5a 422 Pfam PF01593 Flavin containing amine oxidoreductase 15 272 3.7E-18 T 13-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 RAM_15005 1cf0aa563c995ad953f9a5491ca5bb5a 422 Gene3D G3DSA:3.90.660.20 37 228 1.6E-25 T 13-10-2018 RAM_15005 1cf0aa563c995ad953f9a5491ca5bb5a 422 Gene3D G3DSA:1.10.3110.10 108 202 1.6E-25 T 13-10-2018 RAM_00330 d592f21ead4c62c481efb0974ee12de7 247 Pfam PF07729 FCD domain 101 224 2.3E-19 T 13-10-2018 IPR011711 GntR, C-terminal RAM_00330 d592f21ead4c62c481efb0974ee12de7 247 Gene3D G3DSA:1.10.10.10 8 81 3.0E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_00330 d592f21ead4c62c481efb0974ee12de7 247 SUPERFAMILY SSF48008 99 231 2.88E-20 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_00330 d592f21ead4c62c481efb0974ee12de7 247 SMART SM00345 15 76 6.6E-16 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_00330 d592f21ead4c62c481efb0974ee12de7 247 SUPERFAMILY SSF46785 5 84 4.72E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_00330 d592f21ead4c62c481efb0974ee12de7 247 Gene3D G3DSA:1.20.120.530 98 230 1.1E-22 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_00330 d592f21ead4c62c481efb0974ee12de7 247 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 69 1.3E-20 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_00330 d592f21ead4c62c481efb0974ee12de7 247 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 5.7E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_00330 d592f21ead4c62c481efb0974ee12de7 247 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 5.7E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_00330 d592f21ead4c62c481efb0974ee12de7 247 SMART SM00895 101 228 1.9E-16 T 13-10-2018 IPR011711 GntR, C-terminal RAM_40550 d08d1ebdf86896f126dc6998ec716995 683 Pfam PF03176 MMPL family 459 669 1.6E-33 T 13-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 RAM_40550 d08d1ebdf86896f126dc6998ec716995 683 Pfam PF03176 MMPL family 55 359 8.6E-58 T 13-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 RAM_40550 d08d1ebdf86896f126dc6998ec716995 683 SUPERFAMILY SSF82866 116 330 3.27E-34 T 13-10-2018 RAM_40550 d08d1ebdf86896f126dc6998ec716995 683 SUPERFAMILY SSF82866 446 667 2.22E-27 T 13-10-2018 RAM_40550 d08d1ebdf86896f126dc6998ec716995 683 Gene3D G3DSA:1.20.1640.10 161 342 3.5E-11 T 13-10-2018 RAM_33090 e5cae686fa76048b1d2f9d8231f527f0 91 SUPERFAMILY SSF54593 13 79 1.29E-6 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_33090 e5cae686fa76048b1d2f9d8231f527f0 91 Gene3D G3DSA:3.10.180.10 1 91 5.3E-18 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_03465 312c582b4837a92e1c755434fd0e4899 229 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 9 208 32.68 T 13-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_03465 312c582b4837a92e1c755434fd0e4899 229 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 17 202 6.2E-71 T 13-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_03465 312c582b4837a92e1c755434fd0e4899 229 SUPERFAMILY SSF52166 1 204 2.35E-73 T 13-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 RAM_03465 312c582b4837a92e1c755434fd0e4899 229 Gene3D G3DSA:3.40.1370.10 1 207 2.4E-72 T 13-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 RAM_03465 312c582b4837a92e1c755434fd0e4899 229 Pfam PF00573 Ribosomal protein L4/L1 family 17 203 1.4E-62 T 13-10-2018 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 RAM_44355 65ab78573657030425bda318f87bcb19 183 SUPERFAMILY SSF109604 7 165 1.34E-33 T 13-10-2018 RAM_44355 65ab78573657030425bda318f87bcb19 183 SMART SM00471 30 144 2.7E-10 T 13-10-2018 IPR003607 HD/PDEase domain RAM_44355 65ab78573657030425bda318f87bcb19 183 Gene3D G3DSA:1.10.3210.10 1 181 1.7E-43 T 13-10-2018 RAM_44355 65ab78573657030425bda318f87bcb19 183 Pfam PF13023 HD domain 13 168 1.3E-25 T 13-10-2018 IPR006674 HD domain RAM_39380 b22206374cf5b973c0d7c475a544f49b 304 Gene3D G3DSA:1.10.10.10 1 89 8.8E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_39380 b22206374cf5b973c0d7c475a544f49b 304 SUPERFAMILY SSF53850 91 268 4.02E-32 T 13-10-2018 RAM_39380 b22206374cf5b973c0d7c475a544f49b 304 Gene3D G3DSA:3.40.190.290 91 285 2.0E-33 T 13-10-2018 RAM_39380 b22206374cf5b973c0d7c475a544f49b 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 7.6E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_39380 b22206374cf5b973c0d7c475a544f49b 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 7.6E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_39380 b22206374cf5b973c0d7c475a544f49b 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 7.6E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_39380 b22206374cf5b973c0d7c475a544f49b 304 SUPERFAMILY SSF46785 2 111 4.15E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_39380 b22206374cf5b973c0d7c475a544f49b 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 7.2E-22 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_39380 b22206374cf5b973c0d7c475a544f49b 304 Pfam PF03466 LysR substrate binding domain 88 263 3.2E-35 T 13-10-2018 IPR005119 LysR, substrate-binding RAM_07300 848d7f622ff36cc3b7e8c6ff691c2652 514 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 331 347 5.9E-40 T 13-10-2018 RAM_07300 848d7f622ff36cc3b7e8c6ff691c2652 514 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 158 173 5.9E-40 T 13-10-2018 RAM_07300 848d7f622ff36cc3b7e8c6ff691c2652 514 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 296 312 5.9E-40 T 13-10-2018 RAM_07300 848d7f622ff36cc3b7e8c6ff691c2652 514 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 313 331 5.9E-40 T 13-10-2018 RAM_07300 848d7f622ff36cc3b7e8c6ff691c2652 514 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 5.9E-40 T 13-10-2018 RAM_07300 848d7f622ff36cc3b7e8c6ff691c2652 514 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 281 296 5.9E-40 T 13-10-2018 RAM_07300 848d7f622ff36cc3b7e8c6ff691c2652 514 Pfam PF01494 FAD binding domain 6 344 3.1E-83 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_07300 848d7f622ff36cc3b7e8c6ff691c2652 514 Gene3D G3DSA:3.50.50.60 7 344 3.0E-110 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_07300 848d7f622ff36cc3b7e8c6ff691c2652 514 SUPERFAMILY SSF51905 7 354 3.32E-62 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_07300 848d7f622ff36cc3b7e8c6ff691c2652 514 SUPERFAMILY SSF52833 385 500 6.71E-8 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RAM_07300 848d7f622ff36cc3b7e8c6ff691c2652 514 Gene3D G3DSA:3.30.70.2450 187 270 3.0E-110 T 13-10-2018 RAM_07300 848d7f622ff36cc3b7e8c6ff691c2652 514 Gene3D G3DSA:3.40.30.120 363 499 8.1E-14 T 13-10-2018 RAM_00430 7dc3fc5d182704b2c5cf29fb412d37a5 438 SUPERFAMILY SSF51445 6 437 1.07E-155 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_00430 7dc3fc5d182704b2c5cf29fb412d37a5 438 TIGRFAM TIGR03356 BGL: beta-galactosidase 6 431 7.5E-168 T 13-10-2018 IPR017736 Glycoside hydrolase, family 1, beta-glucosidase GO:0008422|GO:0030245 KEGG: 00460+3.2.1.21|KEGG: 00500+3.2.1.21|KEGG: 00940+3.2.1.21|MetaCyc: PWY-3121|MetaCyc: PWY-5176|MetaCyc: PWY-6002|MetaCyc: PWY-6788|MetaCyc: PWY-7091|MetaCyc: PWY-7092|MetaCyc: PWY-7913 RAM_00430 7dc3fc5d182704b2c5cf29fb412d37a5 438 Pfam PF00232 Glycosyl hydrolase family 1 5 437 2.7E-143 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RAM_00430 7dc3fc5d182704b2c5cf29fb412d37a5 438 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 10 24 - T 13-10-2018 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site RAM_00430 7dc3fc5d182704b2c5cf29fb412d37a5 438 PRINTS PR00131 Glycosyl hydrolase family 1 signature 343 351 6.4E-21 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RAM_00430 7dc3fc5d182704b2c5cf29fb412d37a5 438 PRINTS PR00131 Glycosyl hydrolase family 1 signature 278 292 6.4E-21 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RAM_00430 7dc3fc5d182704b2c5cf29fb412d37a5 438 PRINTS PR00131 Glycosyl hydrolase family 1 signature 409 421 6.4E-21 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RAM_00430 7dc3fc5d182704b2c5cf29fb412d37a5 438 PRINTS PR00131 Glycosyl hydrolase family 1 signature 385 402 6.4E-21 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RAM_00430 7dc3fc5d182704b2c5cf29fb412d37a5 438 PRINTS PR00131 Glycosyl hydrolase family 1 signature 364 375 6.4E-21 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RAM_00430 7dc3fc5d182704b2c5cf29fb412d37a5 438 Gene3D G3DSA:3.20.20.80 1 438 4.2E-163 T 13-10-2018 RAM_40690 3c1dab78cbc7fa9aeb0820d33d8119f3 254 SUPERFAMILY SSF55920 3 252 5.1E-73 T 13-10-2018 IPR036005 Creatinase/aminopeptidase-like RAM_40690 3c1dab78cbc7fa9aeb0820d33d8119f3 254 Pfam PF00557 Metallopeptidase family M24 12 245 6.8E-41 T 13-10-2018 IPR000994 Peptidase M24 RAM_40690 3c1dab78cbc7fa9aeb0820d33d8119f3 254 Hamap MF_01974 Methionine aminopeptidase [map]. 2 254 35.626 T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 RAM_40690 3c1dab78cbc7fa9aeb0820d33d8119f3 254 Gene3D G3DSA:3.90.230.10 1 254 5.3E-85 T 13-10-2018 RAM_40690 3c1dab78cbc7fa9aeb0820d33d8119f3 254 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 3 253 7.6E-79 T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 RAM_40690 3c1dab78cbc7fa9aeb0820d33d8119f3 254 PRINTS PR00599 Methionine aminopeptidase-1 signature 73 86 2.0E-19 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 RAM_40690 3c1dab78cbc7fa9aeb0820d33d8119f3 254 PRINTS PR00599 Methionine aminopeptidase-1 signature 165 177 2.0E-19 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 RAM_40690 3c1dab78cbc7fa9aeb0820d33d8119f3 254 PRINTS PR00599 Methionine aminopeptidase-1 signature 196 208 2.0E-19 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 RAM_40690 3c1dab78cbc7fa9aeb0820d33d8119f3 254 PRINTS PR00599 Methionine aminopeptidase-1 signature 95 111 2.0E-19 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 RAM_15385 a0b67257620da482d8b29192fb2d2454 141 TIGRFAM TIGR00026 hi_GC_TIGR00026: deazaflavin-dependent oxidoreductase, nitroreductase family 29 138 2.3E-29 T 13-10-2018 IPR004378 F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 RAM_15385 a0b67257620da482d8b29192fb2d2454 141 Gene3D G3DSA:2.30.110.10 4 141 3.0E-43 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_15385 a0b67257620da482d8b29192fb2d2454 141 Pfam PF04075 F420H(2)-dependent quinone reductase 19 140 4.3E-32 T 13-10-2018 IPR004378 F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 RAM_35810 d33ee8b36d0c129ee273dd3fec68462d 98 Pfam PF14534 Domain of unknown function (DUF4440) 6 78 1.5E-6 T 13-10-2018 IPR027843 Domain of unknown function DUF4440 RAM_35810 d33ee8b36d0c129ee273dd3fec68462d 98 SUPERFAMILY SSF54427 2 95 4.73E-10 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_35810 d33ee8b36d0c129ee273dd3fec68462d 98 Gene3D G3DSA:3.10.450.50 1 97 3.7E-8 T 13-10-2018 RAM_47465 0c45c044d01a991cc12d7640392540b7 612 Gene3D G3DSA:3.40.50.300 48 279 3.6E-26 T 13-10-2018 RAM_47465 0c45c044d01a991cc12d7640392540b7 612 Pfam PF00350 Dynamin family 48 200 2.3E-12 T 13-10-2018 IPR022812 Dynamin superfamily RAM_47465 0c45c044d01a991cc12d7640392540b7 612 SUPERFAMILY SSF52540 40 278 1.67E-28 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_28140 ebfa9b910e145ce17b7257fcbb1d2431 2295 Gene3D G3DSA:2.170.16.10 2045 2189 4.6E-31 T 13-10-2018 RAM_28140 ebfa9b910e145ce17b7257fcbb1d2431 2295 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1653 1688 8.4E-4 T 13-10-2018 IPR006530 YD repeat RAM_28140 ebfa9b910e145ce17b7257fcbb1d2431 2295 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1305 1335 2.0E-5 T 13-10-2018 IPR006530 YD repeat RAM_28140 ebfa9b910e145ce17b7257fcbb1d2431 2295 Gene3D G3DSA:2.180.10.10 1222 1835 2.2E-33 T 13-10-2018 RAM_28140 ebfa9b910e145ce17b7257fcbb1d2431 2295 SUPERFAMILY SSF51294 2048 2190 1.46E-15 T 13-10-2018 IPR036844 Hint domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 RAM_28140 ebfa9b910e145ce17b7257fcbb1d2431 2295 Pfam PF07591 Pretoxin HINT domain 2057 2189 3.2E-10 T 13-10-2018 RAM_28140 ebfa9b910e145ce17b7257fcbb1d2431 2295 SMART SM00306 2046 2147 7.2E-9 T 13-10-2018 IPR003587 Hint domain N-terminal Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 RAM_28140 ebfa9b910e145ce17b7257fcbb1d2431 2295 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 1757 1835 6.4E-16 T 13-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 RAM_28140 ebfa9b910e145ce17b7257fcbb1d2431 2295 Pfam PF03534 Salmonella virulence plasmid 65kDa B protein 247 496 3.8E-5 T 13-10-2018 IPR003284 Salmonella virulence plasmid 65kDa B protein GO:0005737 RAM_28140 ebfa9b910e145ce17b7257fcbb1d2431 2295 TIGRFAM TIGR01443 intein_Cterm: intein C-terminal splicing region 2165 2190 5.4E-4 T 13-10-2018 IPR030934 Intein C-terminal splicing region RAM_28140 ebfa9b910e145ce17b7257fcbb1d2431 2295 Pfam PF05593 RHS Repeat 1305 1335 3.5E-6 T 13-10-2018 IPR031325 RHS repeat RAM_28140 ebfa9b910e145ce17b7257fcbb1d2431 2295 Pfam PF05593 RHS Repeat 1291 1318 5.3E-6 T 13-10-2018 IPR031325 RHS repeat RAM_20425 22101cb88c2507df279276072be9eefe 85 Gene3D G3DSA:1.10.1200.10 3 85 5.5E-17 T 13-10-2018 IPR036736 ACP-like superfamily RAM_20425 22101cb88c2507df279276072be9eefe 85 Pfam PF00550 Phosphopantetheine attachment site 10 81 5.9E-9 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_20425 22101cb88c2507df279276072be9eefe 85 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 42 82 8.0E-5 T 13-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 RAM_20425 22101cb88c2507df279276072be9eefe 85 SUPERFAMILY SSF47336 3 84 4.45E-14 T 13-10-2018 IPR036736 ACP-like superfamily RAM_39620 482dcd9ab1296c75f76610acd3f0c06e 316 TIGRFAM TIGR01136 cysKM: cysteine synthase 9 299 7.6E-107 T 13-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 RAM_39620 482dcd9ab1296c75f76610acd3f0c06e 316 SUPERFAMILY SSF53686 3 298 6.68E-82 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RAM_39620 482dcd9ab1296c75f76610acd3f0c06e 316 Gene3D G3DSA:3.40.50.1100 40 159 1.2E-98 T 13-10-2018 RAM_39620 482dcd9ab1296c75f76610acd3f0c06e 316 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 9 286 4.6E-64 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RAM_39620 482dcd9ab1296c75f76610acd3f0c06e 316 Gene3D G3DSA:3.40.50.1100 8 295 1.2E-98 T 13-10-2018 RAM_39620 482dcd9ab1296c75f76610acd3f0c06e 316 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 33 51 - T 13-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 RAM_04865 d3efde2f8b344188d807d8399f7ad1bb 112 Gene3D G3DSA:1.10.10.10 1 103 6.9E-38 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_04865 d3efde2f8b344188d807d8399f7ad1bb 112 SUPERFAMILY SSF46785 3 98 2.42E-30 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_04865 d3efde2f8b344188d807d8399f7ad1bb 112 Pfam PF01638 HxlR-like helix-turn-helix 7 93 1.4E-31 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type RAM_34130 014f3a07010e93e018ff330a58ac3835 204 Gene3D G3DSA:1.10.357.10 1 204 6.9E-52 T 13-10-2018 RAM_34130 014f3a07010e93e018ff330a58ac3835 204 Pfam PF00440 Bacterial regulatory proteins, tetR family 3 40 1.2E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_34130 014f3a07010e93e018ff330a58ac3835 204 SUPERFAMILY SSF46689 4 49 1.44E-9 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_34130 014f3a07010e93e018ff330a58ac3835 204 Pfam PF02909 Tetracyclin repressor, C-terminal all-alpha domain 54 199 7.1E-14 T 13-10-2018 IPR004111 Tetracycline transcriptional regulator, TetR, C-terminal GO:0045892 RAM_34130 014f3a07010e93e018ff330a58ac3835 204 SUPERFAMILY SSF48498 60 200 1.56E-18 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_47900 0fe875b5a1c2ce876656455b7163d6e2 1018 Pfam PF15567 Immunity protein 35 4 90 1.8E-23 T 13-10-2018 IPR029082 Immunity protein 35 RAM_47900 0fe875b5a1c2ce876656455b7163d6e2 1018 SUPERFAMILY SSF101478 372 623 5.62E-8 T 13-10-2018 IPR036705 ADP-ribosylation/Crystallin J1 superfamily RAM_47900 0fe875b5a1c2ce876656455b7163d6e2 1018 Pfam PF03747 ADP-ribosylglycohydrolase 669 976 3.9E-63 T 13-10-2018 IPR005502 ADP-ribosylation/Crystallin J1 RAM_47900 0fe875b5a1c2ce876656455b7163d6e2 1018 SUPERFAMILY SSF101478 661 996 1.96E-54 T 13-10-2018 IPR036705 ADP-ribosylation/Crystallin J1 superfamily RAM_47900 0fe875b5a1c2ce876656455b7163d6e2 1018 Gene3D G3DSA:1.10.4080.10 665 1001 1.2E-66 T 13-10-2018 IPR036705 ADP-ribosylation/Crystallin J1 superfamily RAM_01245 57cf362f5ece037be3475787fe9449fe 151 PRINTS PR00598 Bacterial regulatory protein MarR family signature 55 71 1.4E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_01245 57cf362f5ece037be3475787fe9449fe 151 PRINTS PR00598 Bacterial regulatory protein MarR family signature 91 107 1.4E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_01245 57cf362f5ece037be3475787fe9449fe 151 PRINTS PR00598 Bacterial regulatory protein MarR family signature 122 142 1.4E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_01245 57cf362f5ece037be3475787fe9449fe 151 PRINTS PR00598 Bacterial regulatory protein MarR family signature 72 87 1.4E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_01245 57cf362f5ece037be3475787fe9449fe 151 SUPERFAMILY SSF46785 3 147 2.45E-29 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_01245 57cf362f5ece037be3475787fe9449fe 151 SMART SM00347 29 132 8.7E-20 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_01245 57cf362f5ece037be3475787fe9449fe 151 Gene3D G3DSA:1.10.10.10 3 150 4.6E-39 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_01245 57cf362f5ece037be3475787fe9449fe 151 Pfam PF01047 MarR family 37 96 3.5E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_22260 4f30aefe11d2822e7ecf7ae6b357f11b 725 Pfam PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding 339 682 1.2E-59 T 13-10-2018 IPR003776 YcaO-like domain RAM_22260 4f30aefe11d2822e7ecf7ae6b357f11b 725 TIGRFAM TIGR03604 TOMM_cyclo_SagD: thiazole/oxazole-forming peptide maturase, SagD family component 338 723 1.7E-78 T 13-10-2018 IPR027624 Thiazole/oxazole-forming peptide maturase, SagD family component RAM_22260 4f30aefe11d2822e7ecf7ae6b357f11b 725 Gene3D G3DSA:3.40.50.720 79 274 6.2E-14 T 13-10-2018 RAM_17130 27676e4c6329dfd5c35144e5a4eee839 525 SUPERFAMILY SSF52096 275 525 6.02E-84 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_17130 27676e4c6329dfd5c35144e5a4eee839 525 Pfam PF01039 Carboxyl transferase domain 33 523 1.3E-181 T 13-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 RAM_17130 27676e4c6329dfd5c35144e5a4eee839 525 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 134 152 1.3E-7 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RAM_17130 27676e4c6329dfd5c35144e5a4eee839 525 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 100 114 1.3E-7 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RAM_17130 27676e4c6329dfd5c35144e5a4eee839 525 Gene3D G3DSA:3.90.226.10 6 263 5.8E-90 T 13-10-2018 RAM_17130 27676e4c6329dfd5c35144e5a4eee839 525 Gene3D G3DSA:3.90.226.10 265 525 2.1E-90 T 13-10-2018 RAM_17130 27676e4c6329dfd5c35144e5a4eee839 525 SUPERFAMILY SSF52096 10 260 7.39E-75 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_37750 2df5593a4226eef84a4c0c25f76b6f6d 467 Pfam PF07690 Major Facilitator Superfamily 6 397 8.9E-46 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_37750 2df5593a4226eef84a4c0c25f76b6f6d 467 SUPERFAMILY SSF103473 2 448 1.19E-53 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_37750 2df5593a4226eef84a4c0c25f76b6f6d 467 ProSitePatterns PS00216 Sugar transport proteins signature 1. 54 70 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RAM_37750 2df5593a4226eef84a4c0c25f76b6f6d 467 Gene3D G3DSA:1.20.1720.10 1 208 3.7E-38 T 13-10-2018 RAM_37750 2df5593a4226eef84a4c0c25f76b6f6d 467 Gene3D G3DSA:1.20.1250.20 254 448 2.1E-14 T 13-10-2018 RAM_32170 5af7e4736e88c6eac9c39f30b9951feb 241 SUPERFAMILY SSF53335 26 201 3.95E-30 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_32170 5af7e4736e88c6eac9c39f30b9951feb 241 Pfam PF13489 Methyltransferase domain 14 193 6.4E-21 T 13-10-2018 RAM_32170 5af7e4736e88c6eac9c39f30b9951feb 241 Gene3D G3DSA:3.40.50.150 8 240 5.4E-41 T 13-10-2018 RAM_44880 031900cb133a8d2f349ea11407b6c74c 201 SUPERFAMILY SSF55620 13 198 1.11E-74 T 13-10-2018 RAM_44880 031900cb133a8d2f349ea11407b6c74c 201 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 15 198 40.461 T 13-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 RAM_44880 031900cb133a8d2f349ea11407b6c74c 201 Gene3D G3DSA:1.10.286.10 2 63 3.5E-19 T 13-10-2018 RAM_44880 031900cb133a8d2f349ea11407b6c74c 201 Gene3D G3DSA:3.30.1130.10 65 200 2.5E-58 T 13-10-2018 RAM_44880 031900cb133a8d2f349ea11407b6c74c 201 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 20 198 4.0E-70 T 13-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 RAM_44880 031900cb133a8d2f349ea11407b6c74c 201 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 125 135 - T 13-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 RAM_44880 031900cb133a8d2f349ea11407b6c74c 201 Pfam PF01227 GTP cyclohydrolase I 20 197 4.0E-74 T 13-10-2018 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 RAM_17355 de2d887eb1d7e46a5f3726f1e7ee6e73 888 Gene3D G3DSA:2.80.10.50 25 148 1.1E-22 T 13-10-2018 RAM_17355 de2d887eb1d7e46a5f3726f1e7ee6e73 888 SUPERFAMILY SSF50370 24 140 1.34E-20 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_17355 de2d887eb1d7e46a5f3726f1e7ee6e73 888 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 78 131 8.2E-10 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_25600 81df62a6a51204123d36d39bf43a5e8c 286 SUPERFAMILY SSF103481 50 117 5.49E-5 T 13-10-2018 RAM_04645 306bb658e7c99fbaa57bc78f8f8a7e5a 208 Pfam PF13411 MerR HTH family regulatory protein 1 69 1.7E-17 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_04645 306bb658e7c99fbaa57bc78f8f8a7e5a 208 Gene3D G3DSA:1.10.1660.10 2 207 1.6E-50 T 13-10-2018 RAM_04645 306bb658e7c99fbaa57bc78f8f8a7e5a 208 SUPERFAMILY SSF46955 1 80 2.88E-14 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily RAM_04645 306bb658e7c99fbaa57bc78f8f8a7e5a 208 SMART SM00422 1 71 1.3E-11 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_04645 306bb658e7c99fbaa57bc78f8f8a7e5a 208 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 2.7E-8 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_04645 306bb658e7c99fbaa57bc78f8f8a7e5a 208 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 2.7E-8 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_04645 306bb658e7c99fbaa57bc78f8f8a7e5a 208 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 2.7E-8 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_06200 81d02a0ed2e63c1caa5c6d30b96fcb14 150 Pfam PF01037 Lrp/AsnC ligand binding domain 76 136 3.1E-10 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RAM_06200 81d02a0ed2e63c1caa5c6d30b96fcb14 150 SMART SM00344 4 110 2.5E-31 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RAM_06200 81d02a0ed2e63c1caa5c6d30b96fcb14 150 SUPERFAMILY SSF54909 66 139 7.24E-12 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_06200 81d02a0ed2e63c1caa5c6d30b96fcb14 150 Pfam PF13404 AsnC-type helix-turn-helix domain 4 45 1.5E-17 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_06200 81d02a0ed2e63c1caa5c6d30b96fcb14 150 SUPERFAMILY SSF46785 3 63 1.3E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_06200 81d02a0ed2e63c1caa5c6d30b96fcb14 150 Gene3D G3DSA:3.30.70.920 55 139 5.1E-19 T 13-10-2018 RAM_06200 81d02a0ed2e63c1caa5c6d30b96fcb14 150 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 4 20 8.1E-16 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_06200 81d02a0ed2e63c1caa5c6d30b96fcb14 150 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 20 31 8.1E-16 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_06200 81d02a0ed2e63c1caa5c6d30b96fcb14 150 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 31 50 8.1E-16 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_06200 81d02a0ed2e63c1caa5c6d30b96fcb14 150 Gene3D G3DSA:1.10.10.10 5 54 1.4E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_21075 f40649bb470ada74c0dbe9ab92005b58 100 Pfam PF08922 Domain of unknown function (DUF1905) 5 95 3.1E-30 T 13-10-2018 IPR015018 Protein of unknown function DUF1905 RAM_21075 f40649bb470ada74c0dbe9ab92005b58 100 SUPERFAMILY SSF141694 2 97 1.1E-19 T 13-10-2018 RAM_21075 f40649bb470ada74c0dbe9ab92005b58 100 Gene3D G3DSA:2.40.30.100 3 97 1.5E-7 T 13-10-2018 IPR037079 AF2212/PG0164-like superfamily RAM_28430 92bcc1f5889ec25014e8975b6f7aed82 282 PRINTS PR00721 Stomatin signature 73 94 1.2E-59 T 13-10-2018 IPR001972 Stomatin family GO:0016020 RAM_28430 92bcc1f5889ec25014e8975b6f7aed82 282 PRINTS PR00721 Stomatin signature 152 170 1.2E-59 T 13-10-2018 IPR001972 Stomatin family GO:0016020 RAM_28430 92bcc1f5889ec25014e8975b6f7aed82 282 PRINTS PR00721 Stomatin signature 26 48 1.2E-59 T 13-10-2018 IPR001972 Stomatin family GO:0016020 RAM_28430 92bcc1f5889ec25014e8975b6f7aed82 282 PRINTS PR00721 Stomatin signature 171 192 1.2E-59 T 13-10-2018 IPR001972 Stomatin family GO:0016020 RAM_28430 92bcc1f5889ec25014e8975b6f7aed82 282 PRINTS PR00721 Stomatin signature 128 151 1.2E-59 T 13-10-2018 IPR001972 Stomatin family GO:0016020 RAM_28430 92bcc1f5889ec25014e8975b6f7aed82 282 PRINTS PR00721 Stomatin signature 108 125 1.2E-59 T 13-10-2018 IPR001972 Stomatin family GO:0016020 RAM_28430 92bcc1f5889ec25014e8975b6f7aed82 282 PRINTS PR00721 Stomatin signature 196 219 1.2E-59 T 13-10-2018 IPR001972 Stomatin family GO:0016020 RAM_28430 92bcc1f5889ec25014e8975b6f7aed82 282 SUPERFAMILY SSF117892 50 183 6.93E-37 T 13-10-2018 IPR036013 Band 7/SPFH domain superfamily RAM_28430 92bcc1f5889ec25014e8975b6f7aed82 282 Gene3D G3DSA:3.30.479.30 47 178 4.1E-43 T 13-10-2018 RAM_28430 92bcc1f5889ec25014e8975b6f7aed82 282 Pfam PF01145 SPFH domain / Band 7 family 23 192 1.5E-32 T 13-10-2018 IPR001107 Band 7 domain RAM_28430 92bcc1f5889ec25014e8975b6f7aed82 282 SMART SM00244 19 176 8.1E-54 T 13-10-2018 IPR001107 Band 7 domain RAM_45795 962a8e57f416273614b3fcfe1ed97684 322 Gene3D G3DSA:3.40.190.10 103 200 5.2E-50 T 13-10-2018 RAM_45795 962a8e57f416273614b3fcfe1ed97684 322 Pfam PF13379 NMT1-like family 23 247 1.3E-25 T 13-10-2018 RAM_45795 962a8e57f416273614b3fcfe1ed97684 322 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 25 318 7.3E-66 T 13-10-2018 IPR010067 Aliphatic sulfonates-binding protein GO:0016020|GO:0042626 RAM_45795 962a8e57f416273614b3fcfe1ed97684 322 SUPERFAMILY SSF53850 23 244 8.32E-49 T 13-10-2018 RAM_45795 962a8e57f416273614b3fcfe1ed97684 322 Gene3D G3DSA:3.40.190.10 38 264 5.2E-50 T 13-10-2018 RAM_24935 86ce5ff1abbd282013f925bece8332d0 311 Pfam PF00248 Aldo/keto reductase family 37 294 5.2E-21 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain RAM_24935 86ce5ff1abbd282013f925bece8332d0 311 Gene3D G3DSA:3.20.20.100 1 286 7.3E-37 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_24935 86ce5ff1abbd282013f925bece8332d0 311 SUPERFAMILY SSF51430 33 295 2.62E-33 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_18890 e22d8d1a001ac05918c6c1c6b403b665 315 Pfam PF05368 NmrA-like family 7 250 6.0E-42 T 13-10-2018 IPR008030 NmrA-like domain Reactome: R-HSA-70635 RAM_18890 e22d8d1a001ac05918c6c1c6b403b665 315 Gene3D G3DSA:3.90.25.10 166 305 1.0E-98 T 13-10-2018 RAM_18890 e22d8d1a001ac05918c6c1c6b403b665 315 Gene3D G3DSA:3.40.50.720 6 298 1.0E-98 T 13-10-2018 RAM_18890 e22d8d1a001ac05918c6c1c6b403b665 315 SUPERFAMILY SSF51735 4 284 9.87E-55 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_31840 cebbf2602b12d0da2a1689c994cfd836 376 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 259 279 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 RAM_31840 cebbf2602b12d0da2a1689c994cfd836 376 Gene3D G3DSA:1.20.1090.10 185 376 5.3E-55 T 13-10-2018 RAM_31840 cebbf2602b12d0da2a1689c994cfd836 376 SUPERFAMILY SSF56796 10 375 3.66E-104 T 13-10-2018 RAM_31840 cebbf2602b12d0da2a1689c994cfd836 376 Gene3D G3DSA:3.40.50.1970 2 183 9.1E-50 T 13-10-2018 RAM_31840 cebbf2602b12d0da2a1689c994cfd836 376 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 172 200 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 RAM_31840 cebbf2602b12d0da2a1689c994cfd836 376 Pfam PF00465 Iron-containing alcohol dehydrogenase 10 368 4.3E-103 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 RAM_09900 c5a4630e322a0edaadf8854ac76ee20e 159 Gene3D G3DSA:1.10.10.10 23 159 3.8E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_09900 c5a4630e322a0edaadf8854ac76ee20e 159 SUPERFAMILY SSF46785 27 158 4.38E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_09900 c5a4630e322a0edaadf8854ac76ee20e 159 PRINTS PR00598 Bacterial regulatory protein MarR family signature 66 82 6.0E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_09900 c5a4630e322a0edaadf8854ac76ee20e 159 PRINTS PR00598 Bacterial regulatory protein MarR family signature 83 98 6.0E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_09900 c5a4630e322a0edaadf8854ac76ee20e 159 PRINTS PR00598 Bacterial regulatory protein MarR family signature 102 118 6.0E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_09900 c5a4630e322a0edaadf8854ac76ee20e 159 SMART SM00347 41 143 1.6E-13 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_09900 c5a4630e322a0edaadf8854ac76ee20e 159 Pfam PF01047 MarR family 55 105 3.7E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_41675 6456e92246f2eb6a18cdaf8c3499eaca 277 Pfam PF04203 Sortase family 168 274 5.5E-7 T 13-10-2018 IPR005754 Sortase family RAM_41675 6456e92246f2eb6a18cdaf8c3499eaca 277 Gene3D G3DSA:2.40.260.10 144 276 3.6E-12 T 13-10-2018 IPR023365 Sortase domain superfamily RAM_41675 6456e92246f2eb6a18cdaf8c3499eaca 277 SUPERFAMILY SSF63817 128 264 1.18E-10 T 13-10-2018 IPR023365 Sortase domain superfamily RAM_07430 037391781c4c66f626ee746d9249ae00 558 SUPERFAMILY SSF49785 342 551 1.53E-53 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_07430 037391781c4c66f626ee746d9249ae00 558 Gene3D G3DSA:3.40.50.1820 7 345 6.3E-97 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_07430 037391781c4c66f626ee746d9249ae00 558 Pfam PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain 331 545 2.1E-42 T 13-10-2018 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 RAM_07430 037391781c4c66f626ee746d9249ae00 558 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 13 282 4.2E-54 T 13-10-2018 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 RAM_07430 037391781c4c66f626ee746d9249ae00 558 TIGRFAM TIGR00976 /NonD: hydrolase CocE/NonD family protein 10 551 2.8E-124 T 13-10-2018 IPR005674 CocE/Serine esterase GO:0016787 RAM_07430 037391781c4c66f626ee746d9249ae00 558 Gene3D G3DSA:2.60.120.260 348 550 5.3E-65 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_07430 037391781c4c66f626ee746d9249ae00 558 Gene3D G3DSA:1.10.3020.10 139 233 6.3E-97 T 13-10-2018 RAM_07430 037391781c4c66f626ee746d9249ae00 558 SMART SM00939 313 546 9.2E-66 T 13-10-2018 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 RAM_07430 037391781c4c66f626ee746d9249ae00 558 SUPERFAMILY SSF53474 2 350 3.65E-46 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_18945 6d07d006fe28210fc6da62f5f827e3ca 163 SUPERFAMILY SSF56176 2 155 3.22E-39 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RAM_18945 6d07d006fe28210fc6da62f5f827e3ca 163 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 3 115 6.4E-29 T 13-10-2018 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 RAM_18945 6d07d006fe28210fc6da62f5f827e3ca 163 Gene3D G3DSA:3.30.465.10 1 162 3.4E-56 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 RAM_24915 7eb053b4a41b4c63ce1e08899a107169 64 Hamap MF_02106 Prokaryotic ubiquitin-like protein Pup [pup]. 1 64 16.309 T 13-10-2018 IPR008515 Ubiquitin-like, Pup RAM_24915 7eb053b4a41b4c63ce1e08899a107169 64 Pfam PF05639 Pup-like protein 16 64 3.9E-21 T 13-10-2018 IPR008515 Ubiquitin-like, Pup RAM_24915 7eb053b4a41b4c63ce1e08899a107169 64 TIGRFAM TIGR03687 pupylate_cterm: ubiquitin-like protein Pup 33 64 1.5E-20 T 13-10-2018 IPR008515 Ubiquitin-like, Pup RAM_40405 479adf0d116cd09094fda209b492428d 188 Gene3D G3DSA:3.50.50.60 118 172 6.3E-18 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_40405 479adf0d116cd09094fda209b492428d 188 Gene3D G3DSA:3.30.9.10 56 107 1.4E-23 T 13-10-2018 RAM_40405 479adf0d116cd09094fda209b492428d 188 Pfam PF01266 FAD dependent oxidoreductase 1 100 3.4E-11 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RAM_40405 479adf0d116cd09094fda209b492428d 188 Gene3D G3DSA:3.30.9.10 108 117 6.3E-18 T 13-10-2018 RAM_40405 479adf0d116cd09094fda209b492428d 188 Gene3D G3DSA:3.50.50.60 1 55 1.4E-23 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_40405 479adf0d116cd09094fda209b492428d 188 SUPERFAMILY SSF51905 1 176 3.63E-19 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_02155 72a5ce71e81b63a7656b71a78b90f75d 388 Pfam PF00155 Aminotransferase class I and II 30 384 2.2E-66 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RAM_02155 72a5ce71e81b63a7656b71a78b90f75d 388 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 197 220 1.0E-11 T 13-10-2018 RAM_02155 72a5ce71e81b63a7656b71a78b90f75d 388 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 112 133 1.0E-11 T 13-10-2018 RAM_02155 72a5ce71e81b63a7656b71a78b90f75d 388 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 90 110 1.0E-11 T 13-10-2018 RAM_02155 72a5ce71e81b63a7656b71a78b90f75d 388 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 161 185 1.0E-11 T 13-10-2018 RAM_02155 72a5ce71e81b63a7656b71a78b90f75d 388 SUPERFAMILY SSF53383 7 387 6.45E-106 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_02155 72a5ce71e81b63a7656b71a78b90f75d 388 Gene3D G3DSA:3.90.1150.10 19 384 3.8E-141 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_02155 72a5ce71e81b63a7656b71a78b90f75d 388 Gene3D G3DSA:3.40.640.10 43 284 3.8E-141 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_34200 f22510b6fe4aabd0a96b6d5b3925af36 255 SUPERFAMILY SSF52096 3 253 1.3E-68 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_34200 f22510b6fe4aabd0a96b6d5b3925af36 255 Gene3D G3DSA:1.10.12.10 198 252 2.8E-16 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal RAM_34200 f22510b6fe4aabd0a96b6d5b3925af36 255 Pfam PF00378 Enoyl-CoA hydratase/isomerase 13 251 4.7E-45 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RAM_34200 f22510b6fe4aabd0a96b6d5b3925af36 255 Gene3D G3DSA:3.90.226.10 2 179 5.0E-55 T 13-10-2018 RAM_14230 4f13f2f89fe82da9701666d32e841d19 261 Pfam PF00121 Triosephosphate isomerase 6 252 1.6E-89 T 13-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RAM_14230 4f13f2f89fe82da9701666d32e841d19 261 ProSitePatterns PS00171 Triosephosphate isomerase active site. 170 180 - T 13-10-2018 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RAM_14230 4f13f2f89fe82da9701666d32e841d19 261 SUPERFAMILY SSF51351 2 254 6.81E-91 T 13-10-2018 IPR035990 Triosephosphate isomerase superfamily GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RAM_14230 4f13f2f89fe82da9701666d32e841d19 261 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 3 254 59.512 T 13-10-2018 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RAM_14230 4f13f2f89fe82da9701666d32e841d19 261 Gene3D G3DSA:3.20.20.70 1 261 2.8E-107 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_14230 4f13f2f89fe82da9701666d32e841d19 261 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 6 244 1.2E-57 T 13-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RAM_31090 791ef3a2bb1f08d1c8df393c6ed34dcf 531 SUPERFAMILY SSF51338 1 515 6.76E-19 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_31090 791ef3a2bb1f08d1c8df393c6ed34dcf 531 Gene3D G3DSA:3.20.20.140 292 459 5.6E-21 T 13-10-2018 RAM_31090 791ef3a2bb1f08d1c8df393c6ed34dcf 531 Gene3D G3DSA:3.20.20.140 54 291 6.1E-77 T 13-10-2018 RAM_31090 791ef3a2bb1f08d1c8df393c6ed34dcf 531 Pfam PF07969 Amidohydrolase family 45 507 7.3E-52 T 13-10-2018 IPR013108 Amidohydrolase 3 RAM_31090 791ef3a2bb1f08d1c8df393c6ed34dcf 531 SUPERFAMILY SSF51556 55 465 9.53E-73 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_18625 32bbcb210d5fb9c7b99186df55ecf4e7 84 Gene3D G3DSA:3.40.50.2300 5 77 4.3E-7 T 13-10-2018 RAM_18625 32bbcb210d5fb9c7b99186df55ecf4e7 84 SUPERFAMILY SSF53822 16 83 1.41E-8 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_07800 2e7695cbf0c9ed8ebc6b4d1ceddffb53 511 Gene3D G3DSA:3.30.565.10 390 510 3.9E-27 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_07800 2e7695cbf0c9ed8ebc6b4d1ceddffb53 511 Pfam PF07730 Histidine kinase 321 388 2.1E-12 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_07800 2e7695cbf0c9ed8ebc6b4d1ceddffb53 511 SUPERFAMILY SSF55874 393 509 5.12E-14 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_07800 2e7695cbf0c9ed8ebc6b4d1ceddffb53 511 SMART SM00387 422 511 5.5E-6 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_15555 d4d9ef0033ab8a5baeeec305e658c145 280 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 114 125 8.2E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15555 d4d9ef0033ab8a5baeeec305e658c145 280 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 186 205 8.2E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15555 d4d9ef0033ab8a5baeeec305e658c145 280 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 166 174 8.2E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15555 d4d9ef0033ab8a5baeeec305e658c145 280 Gene3D G3DSA:3.40.50.720 1 277 2.4E-88 T 13-10-2018 RAM_15555 d4d9ef0033ab8a5baeeec305e658c145 280 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 44 276 5.3E-66 T 13-10-2018 RAM_15555 d4d9ef0033ab8a5baeeec305e658c145 280 SUPERFAMILY SSF51735 37 277 3.4E-81 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_15555 d4d9ef0033ab8a5baeeec305e658c145 280 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 38 223 0.0068 T 13-10-2018 RAM_15555 d4d9ef0033ab8a5baeeec305e658c145 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 114 125 2.9E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15555 d4d9ef0033ab8a5baeeec305e658c145 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 207 224 2.9E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15555 d4d9ef0033ab8a5baeeec305e658c145 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 241 261 2.9E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15555 d4d9ef0033ab8a5baeeec305e658c145 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 176 2.9E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15555 d4d9ef0033ab8a5baeeec305e658c145 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 39 56 2.9E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15555 d4d9ef0033ab8a5baeeec305e658c145 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 186 205 2.9E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_08450 b52701a101be57f1912da607a88e4240 150 Gene3D G3DSA:3.40.630.30 2 150 7.9E-37 T 13-10-2018 RAM_08450 b52701a101be57f1912da607a88e4240 150 SUPERFAMILY SSF55729 3 144 7.93E-29 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_08450 b52701a101be57f1912da607a88e4240 150 Pfam PF00583 Acetyltransferase (GNAT) family 35 139 1.8E-16 T 13-10-2018 IPR000182 GNAT domain RAM_44790 1173a38f17a080dafa0d15e9b58fc41c 831 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 72 121 3.8E-17 T 13-10-2018 IPR004176 Clp, N-terminal RAM_44790 1173a38f17a080dafa0d15e9b58fc41c 831 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 2 47 2.9E-14 T 13-10-2018 IPR004176 Clp, N-terminal RAM_44790 1173a38f17a080dafa0d15e9b58fc41c 831 SMART SM00382 522 701 6.4E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_44790 1173a38f17a080dafa0d15e9b58fc41c 831 SMART SM00382 185 329 5.7E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_44790 1173a38f17a080dafa0d15e9b58fc41c 831 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 190 302 7.5E-13 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RAM_44790 1173a38f17a080dafa0d15e9b58fc41c 831 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 571 589 1.2E-38 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 RAM_44790 1173a38f17a080dafa0d15e9b58fc41c 831 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 600 618 1.2E-38 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 RAM_44790 1173a38f17a080dafa0d15e9b58fc41c 831 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 633 647 1.2E-38 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 RAM_44790 1173a38f17a080dafa0d15e9b58fc41c 831 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 526 544 1.2E-38 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 RAM_44790 1173a38f17a080dafa0d15e9b58fc41c 831 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 700 779 1.1E-24 T 13-10-2018 IPR019489 Clp ATPase, C-terminal RAM_44790 1173a38f17a080dafa0d15e9b58fc41c 831 SUPERFAMILY SSF81923 2 124 5.69E-25 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 RAM_44790 1173a38f17a080dafa0d15e9b58fc41c 831 Gene3D G3DSA:3.40.50.300 329 449 5.5E-39 T 13-10-2018 RAM_44790 1173a38f17a080dafa0d15e9b58fc41c 831 Pfam PF07724 AAA domain (Cdc48 subfamily) 521 694 1.2E-49 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RAM_44790 1173a38f17a080dafa0d15e9b58fc41c 831 Gene3D G3DSA:1.10.1780.10 1 128 1.2E-50 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 RAM_44790 1173a38f17a080dafa0d15e9b58fc41c 831 Gene3D G3DSA:3.40.50.300 139 328 2.3E-69 T 13-10-2018 RAM_44790 1173a38f17a080dafa0d15e9b58fc41c 831 Pfam PF02151 UvrB/uvrC motif 402 434 1.0E-7 T 13-10-2018 IPR001943 UVR domain GO:0005515 RAM_44790 1173a38f17a080dafa0d15e9b58fc41c 831 SUPERFAMILY SSF52540 148 454 4.3E-74 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_44790 1173a38f17a080dafa0d15e9b58fc41c 831 Gene3D G3DSA:1.10.8.60 700 798 2.4E-26 T 13-10-2018 RAM_44790 1173a38f17a080dafa0d15e9b58fc41c 831 SMART SM01086 700 791 1.8E-33 T 13-10-2018 IPR019489 Clp ATPase, C-terminal RAM_44790 1173a38f17a080dafa0d15e9b58fc41c 831 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 280 292 - T 13-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 RAM_44790 1173a38f17a080dafa0d15e9b58fc41c 831 SUPERFAMILY SSF52540 471 784 1.07E-75 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_44790 1173a38f17a080dafa0d15e9b58fc41c 831 Gene3D G3DSA:3.40.50.300 452 698 9.7E-95 T 13-10-2018 RAM_34720 b07ca3465f4f2fa66d970fa22518c77f 761 Pfam PF07971 Glycosyl hydrolase family 92 237 746 5.6E-138 T 13-10-2018 IPR012939 Glycosyl hydrolase family 92 RAM_34720 b07ca3465f4f2fa66d970fa22518c77f 761 SUPERFAMILY SSF48208 267 687 1.13E-22 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_34720 b07ca3465f4f2fa66d970fa22518c77f 761 Gene3D G3DSA:2.70.98.10 23 344 1.0E-225 T 13-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 RAM_34720 b07ca3465f4f2fa66d970fa22518c77f 761 Gene3D G3DSA:1.20.1610.10 443 622 1.0E-225 T 13-10-2018 RAM_34720 b07ca3465f4f2fa66d970fa22518c77f 761 TIGRFAM TIGR01180 aman2_put: putative alpha-1,2-mannosidase 16 749 2.0E-148 T 13-10-2018 IPR005887 Alpha-1,2-mannosidase, putative RAM_34720 b07ca3465f4f2fa66d970fa22518c77f 761 Gene3D G3DSA:1.20.1050.60 345 442 1.0E-225 T 13-10-2018 RAM_34720 b07ca3465f4f2fa66d970fa22518c77f 761 Gene3D G3DSA:3.30.2080.10 293 749 1.0E-225 T 13-10-2018 RAM_23535 45ebcb069ed0708559f75747bc790e71 242 Pfam PF02515 CoA-transferase family III 2 222 4.1E-51 T 13-10-2018 IPR003673 CoA-transferase family III GO:0003824 RAM_23535 45ebcb069ed0708559f75747bc790e71 242 Gene3D G3DSA:3.30.1540.10 82 175 2.2E-56 T 13-10-2018 RAM_23535 45ebcb069ed0708559f75747bc790e71 242 SUPERFAMILY SSF89796 2 235 1.7E-58 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily RAM_23535 45ebcb069ed0708559f75747bc790e71 242 Gene3D G3DSA:3.40.50.10540 7 236 2.2E-56 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily RAM_10205 4be0eeb1c69f7c8796a26fd4d4478476 360 Gene3D G3DSA:2.130.10.10 1 360 6.1E-125 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RAM_10205 4be0eeb1c69f7c8796a26fd4d4478476 360 SUPERFAMILY SSF110296 6 356 2.88E-60 T 13-10-2018 RAM_26480 38aaa9a2314fc6e3eb04231b92de3634 454 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 356 364 - T 13-10-2018 IPR018120 Glycoside hydrolase family 1, active site RAM_26480 38aaa9a2314fc6e3eb04231b92de3634 454 Gene3D G3DSA:3.20.20.80 1 452 1.0E-169 T 13-10-2018 RAM_26480 38aaa9a2314fc6e3eb04231b92de3634 454 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 6 20 - T 13-10-2018 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site RAM_26480 38aaa9a2314fc6e3eb04231b92de3634 454 TIGRFAM TIGR03356 BGL: beta-galactosidase 2 444 7.8E-175 T 13-10-2018 IPR017736 Glycoside hydrolase, family 1, beta-glucosidase GO:0008422|GO:0030245 KEGG: 00460+3.2.1.21|KEGG: 00500+3.2.1.21|KEGG: 00940+3.2.1.21|MetaCyc: PWY-3121|MetaCyc: PWY-5176|MetaCyc: PWY-6002|MetaCyc: PWY-6788|MetaCyc: PWY-7091|MetaCyc: PWY-7092|MetaCyc: PWY-7913 RAM_26480 38aaa9a2314fc6e3eb04231b92de3634 454 SUPERFAMILY SSF51445 2 452 1.18E-159 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_26480 38aaa9a2314fc6e3eb04231b92de3634 454 PRINTS PR00131 Glycosyl hydrolase family 1 signature 356 364 3.1E-21 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RAM_26480 38aaa9a2314fc6e3eb04231b92de3634 454 PRINTS PR00131 Glycosyl hydrolase family 1 signature 283 297 3.1E-21 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RAM_26480 38aaa9a2314fc6e3eb04231b92de3634 454 PRINTS PR00131 Glycosyl hydrolase family 1 signature 422 434 3.1E-21 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RAM_26480 38aaa9a2314fc6e3eb04231b92de3634 454 PRINTS PR00131 Glycosyl hydrolase family 1 signature 398 415 3.1E-21 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RAM_26480 38aaa9a2314fc6e3eb04231b92de3634 454 PRINTS PR00131 Glycosyl hydrolase family 1 signature 377 388 3.1E-21 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RAM_26480 38aaa9a2314fc6e3eb04231b92de3634 454 Pfam PF00232 Glycosyl hydrolase family 1 2 452 5.6E-154 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RAM_16720 314e015cc52f4585dee35bd37bd3ee60 456 Pfam PF00331 Glycosyl hydrolase family 10 42 331 6.3E-104 T 13-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_16720 314e015cc52f4585dee35bd37bd3ee60 456 SMART SM00637 363 453 3.0E-23 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_16720 314e015cc52f4585dee35bd37bd3ee60 456 Gene3D G3DSA:3.20.20.80 35 342 7.8E-116 T 13-10-2018 RAM_16720 314e015cc52f4585dee35bd37bd3ee60 456 Pfam PF00553 Cellulose binding domain 367 448 4.1E-18 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_16720 314e015cc52f4585dee35bd37bd3ee60 456 SMART SM00633 81 332 2.7E-126 T 13-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_16720 314e015cc52f4585dee35bd37bd3ee60 456 SUPERFAMILY SSF49384 358 452 3.21E-21 T 13-10-2018 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily GO:0030246 RAM_16720 314e015cc52f4585dee35bd37bd3ee60 456 PRINTS PR00134 Glycosyl hydrolase family 10 signature 199 210 8.8E-16 T 13-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_16720 314e015cc52f4585dee35bd37bd3ee60 456 PRINTS PR00134 Glycosyl hydrolase family 10 signature 228 240 8.8E-16 T 13-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_16720 314e015cc52f4585dee35bd37bd3ee60 456 PRINTS PR00134 Glycosyl hydrolase family 10 signature 154 165 8.8E-16 T 13-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_16720 314e015cc52f4585dee35bd37bd3ee60 456 PRINTS PR00134 Glycosyl hydrolase family 10 signature 112 124 8.8E-16 T 13-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_16720 314e015cc52f4585dee35bd37bd3ee60 456 ProSitePatterns PS00591 Glycosyl hydrolases family 10 (GH10) active site. 260 270 - T 13-10-2018 IPR031158 Glycosyl hydrolases family 10, active site MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_16720 314e015cc52f4585dee35bd37bd3ee60 456 Gene3D G3DSA:2.60.40.290 357 455 5.3E-22 T 13-10-2018 IPR012291 CBM2, carbohydrate-binding domain superfamily GO:0004553|GO:0030247 RAM_16720 314e015cc52f4585dee35bd37bd3ee60 456 SUPERFAMILY SSF51445 43 334 3.25E-107 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_32470 bb81a2f550bb25eb43b7733647831902 180 SUPERFAMILY SSF48498 83 179 1.53E-14 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_32470 bb81a2f550bb25eb43b7733647831902 180 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 64 2.1E-12 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_32470 bb81a2f550bb25eb43b7733647831902 180 SUPERFAMILY SSF46689 6 87 3.34E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_32470 bb81a2f550bb25eb43b7733647831902 180 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 19 32 3.1E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_32470 bb81a2f550bb25eb43b7733647831902 180 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 3.1E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_32470 bb81a2f550bb25eb43b7733647831902 180 Gene3D G3DSA:1.10.357.10 3 180 1.1E-47 T 13-10-2018 RAM_36250 3a0909c7cc9b9f7745b4086bd35f3c54 298 Gene3D G3DSA:3.40.50.300 1 233 1.2E-59 T 13-10-2018 RAM_36250 3a0909c7cc9b9f7745b4086bd35f3c54 298 SMART SM00382 23 209 1.6E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_36250 3a0909c7cc9b9f7745b4086bd35f3c54 298 Pfam PF00005 ABC transporter 14 161 1.0E-24 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_36250 3a0909c7cc9b9f7745b4086bd35f3c54 298 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_36250 3a0909c7cc9b9f7745b4086bd35f3c54 298 SUPERFAMILY SSF52540 1 223 4.82E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_27345 96c9b24d599dbfd383266e4ba778e198 609 Pfam PF10022 Uncharacterized protein conserved in bacteria (DUF2264) 17 363 3.2E-103 T 13-10-2018 IPR016624 Uncharacterised conserved protein UCP014753 RAM_27345 96c9b24d599dbfd383266e4ba778e198 609 PIRSF PIRSF014753 1 600 8.4E-134 T 13-10-2018 IPR016624 Uncharacterised conserved protein UCP014753 RAM_20075 222e9a7cd19f5e4cad29d640a7776392 135 ProSitePatterns PS00761 Signal peptidases I signature 3. 98 111 - T 13-10-2018 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 RAM_20075 222e9a7cd19f5e4cad29d640a7776392 135 SUPERFAMILY SSF51306 24 132 2.49E-22 T 13-10-2018 IPR036286 LexA/Signal peptidase-like superfamily RAM_20075 222e9a7cd19f5e4cad29d640a7776392 135 Gene3D G3DSA:2.10.109.10 87 134 2.6E-7 T 13-10-2018 RAM_20075 222e9a7cd19f5e4cad29d640a7776392 135 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 70 82 6.8E-9 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RAM_20075 222e9a7cd19f5e4cad29d640a7776392 135 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 20 36 6.8E-9 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RAM_20075 222e9a7cd19f5e4cad29d640a7776392 135 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 93 112 6.8E-9 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RAM_20075 222e9a7cd19f5e4cad29d640a7776392 135 Gene3D G3DSA:2.10.109.10 29 86 7.7E-9 T 13-10-2018 RAM_20075 222e9a7cd19f5e4cad29d640a7776392 135 Pfam PF00717 Peptidase S24-like 26 80 2.4E-9 T 13-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C RAM_34880 90d55b3f0d7e2944451efe0d04622bf3 200 SUPERFAMILY SSF48498 86 179 2.98E-13 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_34880 90d55b3f0d7e2944451efe0d04622bf3 200 Pfam PF00440 Bacterial regulatory proteins, tetR family 21 66 2.2E-12 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_34880 90d55b3f0d7e2944451efe0d04622bf3 200 SUPERFAMILY SSF46689 12 81 2.92E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_34880 90d55b3f0d7e2944451efe0d04622bf3 200 Gene3D G3DSA:1.10.357.10 11 194 5.9E-50 T 13-10-2018 RAM_34880 90d55b3f0d7e2944451efe0d04622bf3 200 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 21 34 9.2E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_34880 90d55b3f0d7e2944451efe0d04622bf3 200 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 42 65 9.2E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_17625 dbec62fd84c10f7ab8c3140d692865b1 318 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_17625 dbec62fd84c10f7ab8c3140d692865b1 318 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 214 276 3.9E-14 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RAM_17625 dbec62fd84c10f7ab8c3140d692865b1 318 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 212 308 1.5E-15 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RAM_17625 dbec62fd84c10f7ab8c3140d692865b1 318 Pfam PF00005 ABC transporter 20 163 1.3E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_17625 dbec62fd84c10f7ab8c3140d692865b1 318 SUPERFAMILY SSF52540 3 234 1.0E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_17625 dbec62fd84c10f7ab8c3140d692865b1 318 SMART SM00382 28 212 1.3E-19 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_17625 dbec62fd84c10f7ab8c3140d692865b1 318 Gene3D G3DSA:3.40.50.300 2 317 2.2E-89 T 13-10-2018 RAM_21170 85ca03258d1a73e695de571366c25b6f 426 SUPERFAMILY SSF103473 8 412 5.23E-73 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_21170 85ca03258d1a73e695de571366c25b6f 426 ProSitePatterns PS00217 Sugar transport proteins signature 2. 115 140 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RAM_21170 85ca03258d1a73e695de571366c25b6f 426 Gene3D G3DSA:1.20.1250.20 215 410 3.7E-25 T 13-10-2018 RAM_21170 85ca03258d1a73e695de571366c25b6f 426 Gene3D G3DSA:1.20.1250.20 16 214 5.7E-40 T 13-10-2018 RAM_21170 85ca03258d1a73e695de571366c25b6f 426 Pfam PF07690 Major Facilitator Superfamily 27 240 1.3E-28 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_21170 85ca03258d1a73e695de571366c25b6f 426 Pfam PF07690 Major Facilitator Superfamily 261 401 4.0E-11 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_37945 900f3bf930b864d1cf67b00d0306a663 113 Pfam PF02148 Zn-finger in ubiquitin-hydrolases and other protein 12 75 3.4E-11 T 13-10-2018 IPR001607 Zinc finger, UBP-type GO:0008270 RAM_37945 900f3bf930b864d1cf67b00d0306a663 113 Gene3D G3DSA:3.30.40.10 2 80 2.2E-20 T 13-10-2018 IPR013083 Zinc finger, RING/FYVE/PHD-type RAM_37945 900f3bf930b864d1cf67b00d0306a663 113 SUPERFAMILY SSF57850 5 78 1.65E-21 T 13-10-2018 RAM_13725 9d424bb60b8188bb7ecbbf57dd36ba38 608 SUPERFAMILY SSF51294 51 342 6.67E-17 T 13-10-2018 IPR036844 Hint domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 RAM_13725 9d424bb60b8188bb7ecbbf57dd36ba38 608 Gene3D G3DSA:3.80.30.30 443 577 2.0E-5 T 13-10-2018 RAM_13725 9d424bb60b8188bb7ecbbf57dd36ba38 608 SMART SM00305 303 348 0.0019 T 13-10-2018 IPR003586 Hint domain C-terminal Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 RAM_13725 9d424bb60b8188bb7ecbbf57dd36ba38 608 SUPERFAMILY SSF102114 407 539 2.35E-7 T 13-10-2018 RAM_13725 9d424bb60b8188bb7ecbbf57dd36ba38 608 SMART SM00306 49 155 1.9E-5 T 13-10-2018 IPR003587 Hint domain N-terminal Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 RAM_13725 9d424bb60b8188bb7ecbbf57dd36ba38 608 Gene3D G3DSA:2.170.16.10 51 158 2.0E-13 T 13-10-2018 RAM_36210 3a65306d06193161565118d23917bdcd 338 Gene3D G3DSA:3.30.360.10 122 335 1.6E-44 T 13-10-2018 RAM_36210 3a65306d06193161565118d23917bdcd 338 SUPERFAMILY SSF51735 4 155 1.09E-53 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_36210 3a65306d06193161565118d23917bdcd 338 SUPERFAMILY SSF55347 128 306 2.78E-34 T 13-10-2018 RAM_36210 3a65306d06193161565118d23917bdcd 338 Gene3D G3DSA:3.40.50.720 1 121 4.4E-40 T 13-10-2018 RAM_36210 3a65306d06193161565118d23917bdcd 338 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 120 1.4E-24 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 RAM_01410 58b2d87d0259a67e753ece87c5385fb5 433 PIRSF PIRSF000521 8 126 0.0012 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RAM_01410 58b2d87d0259a67e753ece87c5385fb5 433 PIRSF PIRSF000521 106 429 4.5E-26 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RAM_01410 58b2d87d0259a67e753ece87c5385fb5 433 Gene3D G3DSA:3.90.1150.10 28 421 6.3E-140 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_01410 58b2d87d0259a67e753ece87c5385fb5 433 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 237 274 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RAM_01410 58b2d87d0259a67e753ece87c5385fb5 433 SUPERFAMILY SSF53383 5 428 2.99E-117 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_01410 58b2d87d0259a67e753ece87c5385fb5 433 Gene3D G3DSA:3.40.640.10 57 321 6.3E-140 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_01410 58b2d87d0259a67e753ece87c5385fb5 433 Pfam PF00202 Aminotransferase class-III 24 426 4.5E-87 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RAM_14715 971f636dac25de7e7a4fb30f1fd2e62e 316 Gene3D G3DSA:3.20.20.80 25 316 2.6E-76 T 13-10-2018 RAM_14715 971f636dac25de7e7a4fb30f1fd2e62e 316 Pfam PF00704 Glycosyl hydrolases family 18 37 236 2.4E-11 T 13-10-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 RAM_14715 971f636dac25de7e7a4fb30f1fd2e62e 316 SUPERFAMILY SSF51445 36 294 2.03E-20 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_18910 a5dd5ac6c7d38d423a4c746ce367f8fb 74 Gene3D G3DSA:3.40.50.720 1 72 8.1E-15 T 13-10-2018 RAM_18910 a5dd5ac6c7d38d423a4c746ce367f8fb 74 SUPERFAMILY SSF51735 1 62 7.81E-11 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_01020 0eeb087095e54180a555ffe0851fec89 309 Gene3D G3DSA:3.90.25.10 179 306 2.7E-84 T 13-10-2018 RAM_01020 0eeb087095e54180a555ffe0851fec89 309 Pfam PF01370 NAD dependent epimerase/dehydratase family 6 242 2.1E-49 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 RAM_01020 0eeb087095e54180a555ffe0851fec89 309 SUPERFAMILY SSF51735 2 306 6.57E-87 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_01020 0eeb087095e54180a555ffe0851fec89 309 Gene3D G3DSA:3.40.50.720 7 298 2.7E-84 T 13-10-2018 RAM_06240 acbf8fdf616a5a3e50ab1f0eaeef67d3 129 Pfam PF06271 RDD family 10 105 1.2E-5 T 13-10-2018 IPR010432 RDD RAM_32340 921e411a370a29ee97c701f0d89372e1 173 Pfam PF05534 HicB family 107 137 3.6E-6 T 13-10-2018 IPR008651 Uncharacterised protein family HicB RAM_32340 921e411a370a29ee97c701f0d89372e1 173 SUPERFAMILY SSF47598 102 148 1.11E-8 T 13-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 RAM_23570 7eea923e6c60b09392ba4e4004990b27 125 Gene3D G3DSA:1.10.1660.10 1 115 5.1E-27 T 13-10-2018 RAM_23570 7eea923e6c60b09392ba4e4004990b27 125 Pfam PF13411 MerR HTH family regulatory protein 3 67 6.2E-19 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_23570 7eea923e6c60b09392ba4e4004990b27 125 SUPERFAMILY SSF46955 3 117 2.2E-26 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily RAM_23570 7eea923e6c60b09392ba4e4004990b27 125 SMART SM00422 3 69 8.5E-16 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_28240 94a0b9039c5bee6d083215f0a00b1db5 419 SUPERFAMILY SSF53448 9 266 1.41E-45 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_28240 94a0b9039c5bee6d083215f0a00b1db5 419 Pfam PF00535 Glycosyl transferase family 2 16 196 2.6E-20 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RAM_28240 94a0b9039c5bee6d083215f0a00b1db5 419 Gene3D G3DSA:3.90.550.10 8 253 8.5E-50 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_09260 a4eb4f5ad22113b89b173565ada370ff 218 Gene3D G3DSA:3.40.50.150 2 218 9.8E-71 T 13-10-2018 RAM_09260 a4eb4f5ad22113b89b173565ada370ff 218 SUPERFAMILY SSF53335 5 216 1.39E-38 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_09260 a4eb4f5ad22113b89b173565ada370ff 218 Pfam PF01596 O-methyltransferase 33 202 3.5E-34 T 13-10-2018 IPR002935 O-methyltransferase, family 3 GO:0008171 RAM_25400 2d59a7309c75bb4f56d5c720d6939678 248 SMART SM00422 12 86 5.9E-18 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_25400 2d59a7309c75bb4f56d5c720d6939678 248 Gene3D G3DSA:1.10.1660.10 27 243 8.9E-22 T 13-10-2018 RAM_25400 2d59a7309c75bb4f56d5c720d6939678 248 Pfam PF00376 MerR family regulatory protein 23 54 2.1E-10 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_25400 2d59a7309c75bb4f56d5c720d6939678 248 SUPERFAMILY SSF46955 27 92 2.84E-12 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily RAM_26560 789075dbf0d036b8b5a7d180a9a83adf 505 SMART SM00880 223 486 3.7E-59 T 13-10-2018 IPR007899 CHAD domain RAM_26560 789075dbf0d036b8b5a7d180a9a83adf 505 Pfam PF05235 CHAD domain 223 453 8.4E-49 T 13-10-2018 IPR007899 CHAD domain RAM_26560 789075dbf0d036b8b5a7d180a9a83adf 505 Gene3D G3DSA:1.40.20.10 211 500 7.9E-60 T 13-10-2018 IPR038186 CHAD domain superfamily RAM_26560 789075dbf0d036b8b5a7d180a9a83adf 505 Gene3D G3DSA:2.40.320.10 6 203 3.2E-18 T 13-10-2018 RAM_26560 789075dbf0d036b8b5a7d180a9a83adf 505 SUPERFAMILY SSF55154 7 209 4.14E-36 T 13-10-2018 IPR033469 CYTH-like domain superfamily Reactome: R-HSA-196819 RAM_26560 789075dbf0d036b8b5a7d180a9a83adf 505 SMART SM01118 7 206 1.6E-10 T 13-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 RAM_26560 789075dbf0d036b8b5a7d180a9a83adf 505 Pfam PF01928 CYTH domain 9 198 3.9E-9 T 13-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 RAM_20050 d33a4d6b2b0ad9a7f3da91757a399d81 375 SUPERFAMILY SSF88713 55 356 5.4E-18 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RAM_25225 2037b79e3f0a0cefcee27897de137b03 937 SUPERFAMILY SSF53732 8 666 7.98E-222 T 13-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 RAM_25225 2037b79e3f0a0cefcee27897de137b03 937 Gene3D G3DSA:3.20.19.10 693 936 1.6E-101 T 13-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 RAM_25225 2037b79e3f0a0cefcee27897de137b03 937 ProSitePatterns PS01244 Aconitase family signature 2. 532 545 - T 13-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 RAM_25225 2037b79e3f0a0cefcee27897de137b03 937 Pfam PF00694 Aconitase C-terminal domain 730 860 1.0E-43 T 13-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 RAM_25225 2037b79e3f0a0cefcee27897de137b03 937 Pfam PF00330 Aconitase family (aconitate hydratase) 71 601 3.0E-176 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RAM_25225 2037b79e3f0a0cefcee27897de137b03 937 PRINTS PR00415 Aconitase family signature 367 381 2.5E-41 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RAM_25225 2037b79e3f0a0cefcee27897de137b03 937 PRINTS PR00415 Aconitase family signature 470 481 2.5E-41 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RAM_25225 2037b79e3f0a0cefcee27897de137b03 937 PRINTS PR00415 Aconitase family signature 169 177 2.5E-41 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RAM_25225 2037b79e3f0a0cefcee27897de137b03 937 PRINTS PR00415 Aconitase family signature 145 158 2.5E-41 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RAM_25225 2037b79e3f0a0cefcee27897de137b03 937 PRINTS PR00415 Aconitase family signature 198 211 2.5E-41 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RAM_25225 2037b79e3f0a0cefcee27897de137b03 937 PRINTS PR00415 Aconitase family signature 532 545 2.5E-41 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RAM_25225 2037b79e3f0a0cefcee27897de137b03 937 PRINTS PR00415 Aconitase family signature 212 227 2.5E-41 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RAM_25225 2037b79e3f0a0cefcee27897de137b03 937 PRINTS PR00415 Aconitase family signature 288 301 2.5E-41 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RAM_25225 2037b79e3f0a0cefcee27897de137b03 937 PRINTS PR00415 Aconitase family signature 274 287 2.5E-41 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RAM_25225 2037b79e3f0a0cefcee27897de137b03 937 Gene3D G3DSA:3.30.499.20 10 367 3.3E-157 T 13-10-2018 RAM_25225 2037b79e3f0a0cefcee27897de137b03 937 SUPERFAMILY SSF52016 670 934 2.75E-81 T 13-10-2018 RAM_25225 2037b79e3f0a0cefcee27897de137b03 937 Gene3D G3DSA:1.10.1440.20 630 690 3.1E-21 T 13-10-2018 RAM_25225 2037b79e3f0a0cefcee27897de137b03 937 ProSitePatterns PS00450 Aconitase family signature 1. 466 482 - T 13-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 RAM_12865 7b1bb2943fda89a721d4ef9dcd87b7e3 85 Gene3D G3DSA:1.10.10.60 14 80 1.4E-7 T 13-10-2018 RAM_12865 7b1bb2943fda89a721d4ef9dcd87b7e3 85 SUPERFAMILY SSF46689 18 67 2.64E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_04620 a6d31ce73d6f68e4eb07e727dd5ee0bc 544 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 484 523 1.1E-7 T 13-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAM_04620 a6d31ce73d6f68e4eb07e727dd5ee0bc 544 SUPERFAMILY SSF55957 440 518 1.83E-10 T 13-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAM_04620 a6d31ce73d6f68e4eb07e727dd5ee0bc 544 SUPERFAMILY SSF53738 299 439 8.63E-27 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAM_04620 a6d31ce73d6f68e4eb07e727dd5ee0bc 544 Gene3D G3DSA:3.40.120.10 320 439 1.3E-25 T 13-10-2018 RAM_04620 a6d31ce73d6f68e4eb07e727dd5ee0bc 544 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 54 189 7.4E-40 T 13-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAM_04620 a6d31ce73d6f68e4eb07e727dd5ee0bc 544 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 148 162 3.9E-6 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAM_04620 a6d31ce73d6f68e4eb07e727dd5ee0bc 544 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 291 306 3.9E-6 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAM_04620 a6d31ce73d6f68e4eb07e727dd5ee0bc 544 Gene3D G3DSA:3.40.120.10 207 319 4.5E-19 T 13-10-2018 RAM_04620 a6d31ce73d6f68e4eb07e727dd5ee0bc 544 Gene3D G3DSA:3.30.310.50 440 532 1.4E-5 T 13-10-2018 RAM_04620 a6d31ce73d6f68e4eb07e727dd5ee0bc 544 SUPERFAMILY SSF53738 45 214 9.03E-43 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAM_04620 a6d31ce73d6f68e4eb07e727dd5ee0bc 544 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 320 434 3.3E-15 T 13-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAM_04620 a6d31ce73d6f68e4eb07e727dd5ee0bc 544 SUPERFAMILY SSF53738 207 306 2.75E-19 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAM_04620 a6d31ce73d6f68e4eb07e727dd5ee0bc 544 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 220 306 7.4E-21 T 13-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAM_04620 a6d31ce73d6f68e4eb07e727dd5ee0bc 544 Gene3D G3DSA:3.40.120.10 45 196 2.2E-46 T 13-10-2018 RAM_04620 a6d31ce73d6f68e4eb07e727dd5ee0bc 544 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 149 158 - T 13-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAM_39010 2a23c69c7e2903c910ebbc71e1112bea 111 TIGRFAM TIGR00377 ant_ant_sig: anti-anti-sigma factor 6 108 2.3E-18 T 13-10-2018 IPR003658 Anti-sigma factor antagonist GO:0006355|GO:0045152 RAM_39010 2a23c69c7e2903c910ebbc71e1112bea 111 Gene3D G3DSA:3.30.750.24 3 111 1.9E-27 T 13-10-2018 IPR036513 STAS domain superfamily RAM_39010 2a23c69c7e2903c910ebbc71e1112bea 111 Pfam PF13466 STAS domain 19 96 9.1E-10 T 13-10-2018 IPR002645 STAS domain RAM_39010 2a23c69c7e2903c910ebbc71e1112bea 111 SUPERFAMILY SSF52091 8 111 3.53E-18 T 13-10-2018 IPR036513 STAS domain superfamily RAM_38755 901129eed87b35b65490a28aac79d076 153 Pfam PF02627 Carboxymuconolactone decarboxylase family 13 94 4.8E-19 T 13-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RAM_38755 901129eed87b35b65490a28aac79d076 153 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 29 77 8.8E-20 T 13-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RAM_38755 901129eed87b35b65490a28aac79d076 153 Gene3D G3DSA:1.20.1290.10 2 146 3.1E-47 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_38755 901129eed87b35b65490a28aac79d076 153 SUPERFAMILY SSF69118 6 141 3.8E-41 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_12365 7da5b277af8248a1a8b13f27a37a4bbe 397 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 16 301 2.0E-64 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_12365 7da5b277af8248a1a8b13f27a37a4bbe 397 Pfam PF02470 MlaD protein 39 111 9.5E-13 T 13-10-2018 IPR003399 Mce/MlaD RAM_23420 0e7ca11240f14996b0ce81a1837beca8 301 Gene3D G3DSA:3.40.710.10 2 301 2.5E-102 T 13-10-2018 RAM_23420 0e7ca11240f14996b0ce81a1837beca8 301 SUPERFAMILY SSF56601 5 301 2.54E-100 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_23420 0e7ca11240f14996b0ce81a1837beca8 301 Hamap MF_00313 Glutaminase [glsA]. 3 301 43.87 T 13-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 RAM_23420 0e7ca11240f14996b0ce81a1837beca8 301 TIGRFAM TIGR03814 Gln_ase: glutaminase A 7 301 2.7E-119 T 13-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 RAM_23420 0e7ca11240f14996b0ce81a1837beca8 301 Pfam PF04960 Glutaminase 21 301 2.3E-107 T 13-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 RAM_47070 b8be0a4d5721f4346f72cc27f4304d80 142 SUPERFAMILY SSF46785 8 123 1.97E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_47070 b8be0a4d5721f4346f72cc27f4304d80 142 SMART SM00347 11 111 9.8E-19 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_47070 b8be0a4d5721f4346f72cc27f4304d80 142 PRINTS PR00598 Bacterial regulatory protein MarR family signature 52 67 2.1E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_47070 b8be0a4d5721f4346f72cc27f4304d80 142 PRINTS PR00598 Bacterial regulatory protein MarR family signature 71 87 2.1E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_47070 b8be0a4d5721f4346f72cc27f4304d80 142 PRINTS PR00598 Bacterial regulatory protein MarR family signature 35 51 2.1E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_47070 b8be0a4d5721f4346f72cc27f4304d80 142 PRINTS PR00598 Bacterial regulatory protein MarR family signature 101 121 2.1E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_47070 b8be0a4d5721f4346f72cc27f4304d80 142 Gene3D G3DSA:1.10.10.10 2 123 8.5E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_47070 b8be0a4d5721f4346f72cc27f4304d80 142 Pfam PF01047 MarR family 18 76 2.0E-16 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_43105 165350c50ad05fdbe6035677a8598736 146 Pfam PF00583 Acetyltransferase (GNAT) family 26 132 2.8E-10 T 13-10-2018 IPR000182 GNAT domain RAM_43105 165350c50ad05fdbe6035677a8598736 146 SUPERFAMILY SSF55729 2 144 4.43E-23 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_43105 165350c50ad05fdbe6035677a8598736 146 Gene3D G3DSA:3.40.630.30 1 145 2.7E-32 T 13-10-2018 RAM_32295 6b8b4b63e84c6abc78deb947fd8f20b7 457 Pfam PF00324 Amino acid permease 15 446 1.1E-97 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 RAM_32295 6b8b4b63e84c6abc78deb947fd8f20b7 457 PIRSF PIRSF006060 2 453 4.6E-63 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RAM_32295 6b8b4b63e84c6abc78deb947fd8f20b7 457 Gene3D G3DSA:1.20.1740.10 9 455 6.9E-60 T 13-10-2018 RAM_15875 d16fb58a64747902464a6cead30596bb 269 SUPERFAMILY SSF81301 3 141 1.5E-26 T 13-10-2018 RAM_15875 d16fb58a64747902464a6cead30596bb 269 Pfam PF04972 BON domain 195 256 1.2E-5 T 13-10-2018 IPR007055 BON domain RAM_15875 d16fb58a64747902464a6cead30596bb 269 Gene3D G3DSA:3.30.460.40 1 136 1.9E-10 T 13-10-2018 RAM_15875 d16fb58a64747902464a6cead30596bb 269 Pfam PF14907 Uncharacterised nucleotidyltransferase 5 173 9.4E-10 T 13-10-2018 IPR039498 Uncharacterised nucleotidyltransferase RAM_20205 898214098b73e8c4e8d7fd58cd96254e 228 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 6.0E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_20205 898214098b73e8c4e8d7fd58cd96254e 228 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 177 6.0E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_20205 898214098b73e8c4e8d7fd58cd96254e 228 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 191 211 6.0E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_20205 898214098b73e8c4e8d7fd58cd96254e 228 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 141 160 6.0E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_20205 898214098b73e8c4e8d7fd58cd96254e 228 SUPERFAMILY SSF51735 3 226 2.19E-39 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_20205 898214098b73e8c4e8d7fd58cd96254e 228 Gene3D G3DSA:3.40.50.720 2 226 1.3E-36 T 13-10-2018 RAM_20205 898214098b73e8c4e8d7fd58cd96254e 228 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 11 225 1.9E-24 T 13-10-2018 RAM_10435 66e2317f15ba24a0c0f6e20a0e4cb87f 274 SMART SM00020 45 264 6.8E-70 T 13-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 RAM_10435 66e2317f15ba24a0c0f6e20a0e4cb87f 274 SUPERFAMILY SSF50494 12 265 1.0E-64 T 13-10-2018 IPR009003 Peptidase S1, PA clan RAM_10435 66e2317f15ba24a0c0f6e20a0e4cb87f 274 Gene3D G3DSA:2.40.10.10 46 258 8.6E-69 T 13-10-2018 RAM_10435 66e2317f15ba24a0c0f6e20a0e4cb87f 274 Gene3D G3DSA:2.40.10.10 58 260 8.6E-69 T 13-10-2018 RAM_10435 66e2317f15ba24a0c0f6e20a0e4cb87f 274 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 73 88 4.7E-9 T 13-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 RAM_10435 66e2317f15ba24a0c0f6e20a0e4cb87f 274 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 129 143 4.7E-9 T 13-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 RAM_10435 66e2317f15ba24a0c0f6e20a0e4cb87f 274 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 218 230 4.7E-9 T 13-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 RAM_10435 66e2317f15ba24a0c0f6e20a0e4cb87f 274 Pfam PF00089 Trypsin 46 262 1.3E-54 T 13-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 RAM_10435 66e2317f15ba24a0c0f6e20a0e4cb87f 274 ProSitePatterns PS00135 Serine proteases, trypsin family, serine active site. 219 230 - T 13-10-2018 IPR033116 Serine proteases, trypsin family, serine active site RAM_11790 a17dec3413581893c8d2d88be6add383 501 Pfam PF15975 Flotillin 378 479 3.0E-12 T 13-10-2018 IPR031905 Flotillin, C-terminal domain Reactome: R-HSA-8849932 RAM_11790 a17dec3413581893c8d2d88be6add383 501 SUPERFAMILY SSF117892 69 206 5.49E-26 T 13-10-2018 IPR036013 Band 7/SPFH domain superfamily RAM_11790 a17dec3413581893c8d2d88be6add383 501 Gene3D G3DSA:3.30.479.30 78 192 9.0E-26 T 13-10-2018 RAM_11790 a17dec3413581893c8d2d88be6add383 501 Pfam PF01145 SPFH domain / Band 7 family 31 217 2.3E-20 T 13-10-2018 IPR001107 Band 7 domain RAM_11790 a17dec3413581893c8d2d88be6add383 501 SMART SM00244 27 202 0.0021 T 13-10-2018 IPR001107 Band 7 domain RAM_12445 44be8df927f4029be3d3648d0bf513a2 264 SUPERFAMILY SSF56300 2 260 5.84E-30 T 13-10-2018 RAM_12445 44be8df927f4029be3d3648d0bf513a2 264 Gene3D G3DSA:3.60.21.10 1 50 2.9E-5 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like RAM_12445 44be8df927f4029be3d3648d0bf513a2 264 Gene3D G3DSA:3.60.21.10 157 263 7.4E-9 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like RAM_12445 44be8df927f4029be3d3648d0bf513a2 264 Pfam PF00149 Calcineurin-like phosphoesterase 2 235 2.5E-6 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 RAM_23615 1cbb8a67fa223caf78e12976e23e045d 684 Gene3D G3DSA:1.10.1370.40 36 675 6.7E-246 T 13-10-2018 RAM_23615 1cbb8a67fa223caf78e12976e23e045d 684 Pfam PF01432 Peptidase family M3 235 680 6.0E-120 T 13-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 RAM_23615 1cbb8a67fa223caf78e12976e23e045d 684 SUPERFAMILY SSF55486 14 680 1.06E-169 T 13-10-2018 RAM_23615 1cbb8a67fa223caf78e12976e23e045d 684 Gene3D G3DSA:1.10.1370.10 147 613 6.7E-246 T 13-10-2018 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 RAM_37725 2e16584e141ff15c50a018f079bc80e8 422 Gene3D G3DSA:1.10.630.10 7 412 3.8E-116 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_37725 2e16584e141ff15c50a018f079bc80e8 422 SUPERFAMILY SSF48264 19 409 1.57E-83 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_37725 2e16584e141ff15c50a018f079bc80e8 422 Pfam PF00067 Cytochrome P450 280 379 6.6E-17 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_37725 2e16584e141ff15c50a018f079bc80e8 422 PRINTS PR00359 B-class P450 signature 349 358 6.5E-27 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_37725 2e16584e141ff15c50a018f079bc80e8 422 PRINTS PR00359 B-class P450 signature 281 292 6.5E-27 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_37725 2e16584e141ff15c50a018f079bc80e8 422 PRINTS PR00359 B-class P450 signature 299 326 6.5E-27 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_37725 2e16584e141ff15c50a018f079bc80e8 422 PRINTS PR00359 B-class P450 signature 199 221 6.5E-27 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_37725 2e16584e141ff15c50a018f079bc80e8 422 PRINTS PR00359 B-class P450 signature 358 369 6.5E-27 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_37725 2e16584e141ff15c50a018f079bc80e8 422 PRINTS PR00359 B-class P450 signature 145 161 6.5E-27 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_37725 2e16584e141ff15c50a018f079bc80e8 422 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 351 360 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RAM_25160 4bcaea39b2741df7eddf17c22080f526 441 ProSitePatterns PS00217 Sugar transport proteins signature 2. 131 156 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RAM_25160 4bcaea39b2741df7eddf17c22080f526 441 SUPERFAMILY SSF103473 22 439 1.28E-68 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_25160 4bcaea39b2741df7eddf17c22080f526 441 ProSitePatterns PS00216 Sugar transport proteins signature 1. 81 97 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RAM_25160 4bcaea39b2741df7eddf17c22080f526 441 Gene3D G3DSA:1.20.1250.20 22 441 2.4E-71 T 13-10-2018 RAM_25160 4bcaea39b2741df7eddf17c22080f526 441 Pfam PF07690 Major Facilitator Superfamily 34 377 5.1E-29 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_14705 fd3e354d439b22d077b793f5cfcca91d 586 Pfam PF03023 MviN-like protein 83 513 1.5E-88 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ RAM_14705 fd3e354d439b22d077b793f5cfcca91d 586 PRINTS PR01806 Virulence factor MviN signature 209 230 6.3E-29 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ RAM_14705 fd3e354d439b22d077b793f5cfcca91d 586 PRINTS PR01806 Virulence factor MviN signature 88 107 6.3E-29 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ RAM_14705 fd3e354d439b22d077b793f5cfcca91d 586 PRINTS PR01806 Virulence factor MviN signature 419 438 6.3E-29 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ RAM_14705 fd3e354d439b22d077b793f5cfcca91d 586 PRINTS PR01806 Virulence factor MviN signature 185 209 6.3E-29 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ RAM_14705 fd3e354d439b22d077b793f5cfcca91d 586 PRINTS PR01806 Virulence factor MviN signature 107 123 6.3E-29 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ RAM_14705 fd3e354d439b22d077b793f5cfcca91d 586 PRINTS PR01806 Virulence factor MviN signature 321 347 6.3E-29 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ RAM_14705 fd3e354d439b22d077b793f5cfcca91d 586 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 57 572 8.6E-77 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ RAM_20400 d116e15472c1ebb0717f47c2efa36b92 1218 Gene3D G3DSA:2.60.40.10 684 807 5.3E-23 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_20400 d116e15472c1ebb0717f47c2efa36b92 1218 SUPERFAMILY SSF49373 868 914 3.77E-8 T 13-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments RAM_20400 d116e15472c1ebb0717f47c2efa36b92 1218 Gene3D G3DSA:3.20.20.300 39 421 2.5E-70 T 13-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 RAM_20400 d116e15472c1ebb0717f47c2efa36b92 1218 SUPERFAMILY SSF52279 444 684 2.88E-39 T 13-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 RAM_20400 d116e15472c1ebb0717f47c2efa36b92 1218 SMART SM01217 718 791 5.3E-17 T 13-10-2018 IPR026891 Fibronectin type III-like domain RAM_20400 d116e15472c1ebb0717f47c2efa36b92 1218 Gene3D G3DSA:3.40.50.1700 429 683 1.4E-57 T 13-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 RAM_20400 d116e15472c1ebb0717f47c2efa36b92 1218 SUPERFAMILY SSF51445 42 442 1.47E-69 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_20400 d116e15472c1ebb0717f47c2efa36b92 1218 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 172 323 7.1E-31 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAM_20400 d116e15472c1ebb0717f47c2efa36b92 1218 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 444 681 9.6E-47 T 13-10-2018 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 RAM_20400 d116e15472c1ebb0717f47c2efa36b92 1218 Pfam PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase 926 1005 5.2E-17 T 13-10-2018 IPR018905 Alpha-galactosidase, NEW3 domain RAM_20400 d116e15472c1ebb0717f47c2efa36b92 1218 Pfam PF02368 Bacterial Ig-like domain (group 2) 871 914 6.7E-7 T 13-10-2018 IPR003343 Bacterial Ig-like, group 2 RAM_20400 d116e15472c1ebb0717f47c2efa36b92 1218 Gene3D G3DSA:2.60.40.1080 810 919 1.5E-9 T 13-10-2018 RAM_20400 d116e15472c1ebb0717f47c2efa36b92 1218 Pfam PF14310 Fibronectin type III-like domain 719 791 2.3E-14 T 13-10-2018 IPR026891 Fibronectin type III-like domain RAM_35690 947a9b7b3f5e025a90aee99ab50b46ca 490 Pfam PF03055 Retinal pigment epithelial membrane protein 28 480 4.1E-114 T 13-10-2018 IPR004294 Carotenoid oxygenase GO:0016702|GO:0055114 RAM_09750 56466e11dac9771c745e4003417bc0d6 753 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 170 695 4.2E-138 T 13-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RAM_09750 56466e11dac9771c745e4003417bc0d6 753 SUPERFAMILY SSF56003 127 750 1.28E-151 T 13-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 RAM_09750 56466e11dac9771c745e4003417bc0d6 753 SUPERFAMILY SSF54665 10 154 1.31E-40 T 13-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily RAM_09750 56466e11dac9771c745e4003417bc0d6 753 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 30 135 2.0E-29 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RAM_09750 56466e11dac9771c745e4003417bc0d6 753 TIGRFAM TIGR03196 pucD: xanthine dehydrogenase D subunit 15 750 1.6E-245 T 13-10-2018 IPR017609 Xanthine dehydrogenase D subunit KEGG: 00230+1.17.1.4|MetaCyc: PWY-5497|MetaCyc: PWY-5695|MetaCyc: PWY-6538|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-6999 RAM_09750 56466e11dac9771c745e4003417bc0d6 753 SMART SM01008 29 135 3.7E-44 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RAM_09750 56466e11dac9771c745e4003417bc0d6 753 Gene3D G3DSA:3.30.365.10 1 751 9.6E-202 T 13-10-2018 RAM_20325 f97185d52c789ba569dbcdc71ae855df 775 Pfam PF07944 Beta-L-arabinofuranosidase, GH127 59 577 9.7E-141 T 13-10-2018 IPR012878 Beta-L-arabinofuranosidase, GH127 RAM_20325 f97185d52c789ba569dbcdc71ae855df 775 Gene3D G3DSA:2.80.10.50 681 772 3.3E-20 T 13-10-2018 RAM_20325 f97185d52c789ba569dbcdc71ae855df 775 SUPERFAMILY SSF48208 112 401 6.8E-15 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_20325 f97185d52c789ba569dbcdc71ae855df 775 SUPERFAMILY SSF50370 636 772 1.43E-34 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_20325 f97185d52c789ba569dbcdc71ae855df 775 Gene3D G3DSA:2.80.10.50 589 680 1.2E-9 T 13-10-2018 RAM_20325 f97185d52c789ba569dbcdc71ae855df 775 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 629 712 2.1E-15 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_20325 f97185d52c789ba569dbcdc71ae855df 775 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 720 775 2.1E-8 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_32655 3f0449679caca81ec59aa0bdff453a0f 308 SUPERFAMILY SSF48179 185 256 4.0E-11 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RAM_32655 3f0449679caca81ec59aa0bdff453a0f 308 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 182 207 - T 13-10-2018 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RAM_32655 3f0449679caca81ec59aa0bdff453a0f 308 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 7 179 1.1E-43 T 13-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RAM_32655 3f0449679caca81ec59aa0bdff453a0f 308 Gene3D G3DSA:1.10.1040.10 186 308 2.6E-32 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RAM_32655 3f0449679caca81ec59aa0bdff453a0f 308 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 185 254 1.1E-13 T 13-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RAM_32655 3f0449679caca81ec59aa0bdff453a0f 308 SUPERFAMILY SSF51735 2 182 7.98E-43 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_32655 3f0449679caca81ec59aa0bdff453a0f 308 Gene3D G3DSA:3.40.50.720 2 185 3.4E-47 T 13-10-2018 RAM_32655 3f0449679caca81ec59aa0bdff453a0f 308 PIRSF PIRSF000105 2 306 2.2E-62 T 13-10-2018 IPR022694 3-hydroxyacyl-CoA dehydrogenase GO:0003857|GO:0006631|GO:0055114|GO:0070403 RAM_27620 36d99c674936bd7412569ae6dadac08c 392 Pfam PF06722 Protein of unknown function (DUF1205) 179 273 6.4E-25 T 13-10-2018 IPR010610 Domain of unknown function DUF1205 RAM_27620 36d99c674936bd7412569ae6dadac08c 392 SUPERFAMILY SSF53756 1 387 5.34E-84 T 13-10-2018 RAM_27620 36d99c674936bd7412569ae6dadac08c 392 Gene3D G3DSA:3.40.50.11450 1 384 3.4E-136 T 13-10-2018 RAM_27620 36d99c674936bd7412569ae6dadac08c 392 Gene3D G3DSA:3.40.50.2000 201 371 3.4E-136 T 13-10-2018 RAM_27690 9fee8af4bd3c82a1e38ef15cbba0582b 155 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 4 145 2.1E-11 T 13-10-2018 IPR019587 Polyketide cyclase/dehydrase RAM_27690 9fee8af4bd3c82a1e38ef15cbba0582b 155 Gene3D G3DSA:3.30.530.20 1 153 2.0E-42 T 13-10-2018 IPR023393 START-like domain superfamily RAM_27690 9fee8af4bd3c82a1e38ef15cbba0582b 155 SUPERFAMILY SSF55961 1 150 8.92E-34 T 13-10-2018 RAM_38765 53d7919763d0b8150e2e2637a5a2541d 481 Gene3D G3DSA:1.20.1250.20 275 469 5.7E-17 T 13-10-2018 RAM_38765 53d7919763d0b8150e2e2637a5a2541d 481 Pfam PF07690 Major Facilitator Superfamily 22 413 4.7E-48 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_38765 53d7919763d0b8150e2e2637a5a2541d 481 SUPERFAMILY SSF103473 9 460 8.76E-60 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_38765 53d7919763d0b8150e2e2637a5a2541d 481 ProSitePatterns PS00216 Sugar transport proteins signature 1. 71 87 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RAM_38765 53d7919763d0b8150e2e2637a5a2541d 481 Gene3D G3DSA:1.20.1720.10 17 222 3.9E-40 T 13-10-2018 RAM_30505 8e67d659ab45a95fd2fcc1534886f0d3 400 Pfam PF10503 Esterase PHB depolymerase 46 251 3.9E-41 T 13-10-2018 IPR010126 Esterase, PHB depolymerase GO:0005576|GO:0016787 RAM_30505 8e67d659ab45a95fd2fcc1534886f0d3 400 SUPERFAMILY SSF53474 22 131 2.81E-21 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_30505 8e67d659ab45a95fd2fcc1534886f0d3 400 TIGRFAM TIGR01840 esterase_phb: esterase, PHB depolymerase family 47 257 1.0E-65 T 13-10-2018 IPR010126 Esterase, PHB depolymerase GO:0005576|GO:0016787 RAM_30505 8e67d659ab45a95fd2fcc1534886f0d3 400 Gene3D G3DSA:3.40.50.1820 29 297 3.0E-54 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_30505 8e67d659ab45a95fd2fcc1534886f0d3 400 SUPERFAMILY SSF53474 133 361 2.87E-42 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_01610 26cf41d6f5003ad7c9b75cc4fc3ffd7a 298 Gene3D G3DSA:3.40.710.10 82 296 9.3E-27 T 13-10-2018 RAM_01610 26cf41d6f5003ad7c9b75cc4fc3ffd7a 298 SUPERFAMILY SSF56601 93 294 7.52E-21 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_37670 c895c80818fb7d8e8e1870ba813df069 283 Pfam PF13460 NAD(P)H-binding 8 99 2.9E-6 T 13-10-2018 IPR016040 NAD(P)-binding domain RAM_37670 c895c80818fb7d8e8e1870ba813df069 283 Gene3D G3DSA:3.90.25.10 124 262 3.3E-53 T 13-10-2018 RAM_37670 c895c80818fb7d8e8e1870ba813df069 283 Gene3D G3DSA:3.40.50.720 5 260 3.3E-53 T 13-10-2018 RAM_37670 c895c80818fb7d8e8e1870ba813df069 283 SUPERFAMILY SSF51735 4 242 7.46E-36 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_46095 d04591c8a54e84a94521795106cb8fa0 311 Gene3D G3DSA:3.30.360.10 143 310 1.1E-49 T 13-10-2018 RAM_46095 d04591c8a54e84a94521795106cb8fa0 311 Gene3D G3DSA:3.40.50.720 1 142 3.1E-37 T 13-10-2018 RAM_46095 d04591c8a54e84a94521795106cb8fa0 311 SUPERFAMILY SSF51735 2 146 2.19E-43 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_46095 d04591c8a54e84a94521795106cb8fa0 311 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 2 112 1.2E-19 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 RAM_46095 d04591c8a54e84a94521795106cb8fa0 311 SUPERFAMILY SSF55347 120 277 4.41E-35 T 13-10-2018 RAM_19560 c5a2da6d9419f5ce712a96f43761ec3f 477 SUPERFAMILY SSF53720 6 475 9.03E-149 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RAM_19560 c5a2da6d9419f5ce712a96f43761ec3f 477 Pfam PF00171 Aldehyde dehydrogenase family 15 474 4.7E-146 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RAM_19560 c5a2da6d9419f5ce712a96f43761ec3f 477 Gene3D G3DSA:3.40.605.10 20 468 2.5E-152 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RAM_19560 c5a2da6d9419f5ce712a96f43761ec3f 477 Gene3D G3DSA:3.40.309.10 257 446 2.5E-152 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RAM_25405 4a19275515a2015b7528908eb3663a0a 154 SMART SM00240 72 122 2.8E-17 T 13-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 RAM_25405 4a19275515a2015b7528908eb3663a0a 154 Pfam PF00498 FHA domain 74 136 6.6E-19 T 13-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 RAM_25405 4a19275515a2015b7528908eb3663a0a 154 SUPERFAMILY SSF49879 26 143 1.47E-32 T 13-10-2018 IPR008984 SMAD/FHA domain superfamily GO:0005515 RAM_25405 4a19275515a2015b7528908eb3663a0a 154 Gene3D G3DSA:2.60.200.20 21 148 3.0E-39 T 13-10-2018 RAM_36035 c79ab2e2eed829d3daf03045aada2a67 911 SUPERFAMILY SSF56176 3 238 1.59E-52 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RAM_36035 c79ab2e2eed829d3daf03045aada2a67 911 Pfam PF13183 4Fe-4S dicluster domain 511 589 3.8E-10 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RAM_36035 c79ab2e2eed829d3daf03045aada2a67 911 SUPERFAMILY SSF55103 241 475 7.52E-51 T 13-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 RAM_36035 c79ab2e2eed829d3daf03045aada2a67 911 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 575 586 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RAM_36035 c79ab2e2eed829d3daf03045aada2a67 911 Gene3D G3DSA:3.30.70.2740 355 433 5.5E-8 T 13-10-2018 RAM_36035 c79ab2e2eed829d3daf03045aada2a67 911 SUPERFAMILY SSF46548 496 594 4.18E-9 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 RAM_36035 c79ab2e2eed829d3daf03045aada2a67 911 Pfam PF01565 FAD binding domain 24 161 4.4E-39 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RAM_36035 c79ab2e2eed829d3daf03045aada2a67 911 Pfam PF02913 FAD linked oxidases, C-terminal domain 238 471 3.0E-47 T 13-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 RAM_42090 34007b06ea35d43bbee38aa5161bce75 317 SUPERFAMILY SSF53067 3 127 2.2E-34 T 13-10-2018 RAM_42090 34007b06ea35d43bbee38aa5161bce75 317 Gene3D G3DSA:3.30.420.150 128 317 4.8E-59 T 13-10-2018 RAM_42090 34007b06ea35d43bbee38aa5161bce75 317 Gene3D G3DSA:3.30.420.40 1 127 6.1E-47 T 13-10-2018 RAM_42090 34007b06ea35d43bbee38aa5161bce75 317 SUPERFAMILY SSF53067 133 316 8.29E-36 T 13-10-2018 RAM_42090 34007b06ea35d43bbee38aa5161bce75 317 Pfam PF02541 Ppx/GppA phosphatase family 28 315 1.2E-67 T 13-10-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 RAM_47310 7d6587b9d667bcc12e7e22a11af197a5 90 SUPERFAMILY SSF52980 6 87 2.63E-28 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 RAM_47310 7d6587b9d667bcc12e7e22a11af197a5 90 Pfam PF03852 DNA mismatch endonuclease Vsr 8 28 4.7E-9 T 13-10-2018 IPR004603 DNA mismatch endonuclease vsr GO:0004519|GO:0006298 RAM_47310 7d6587b9d667bcc12e7e22a11af197a5 90 Gene3D G3DSA:3.40.960.10 2 89 3.9E-32 T 13-10-2018 RAM_47310 7d6587b9d667bcc12e7e22a11af197a5 90 TIGRFAM TIGR00632 vsr: DNA mismatch endonuclease Vsr 5 75 4.6E-33 T 13-10-2018 IPR004603 DNA mismatch endonuclease vsr GO:0004519|GO:0006298 RAM_31435 308643402675cefba8e767603a61bb1d 190 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 55 3.6E-14 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_31435 308643402675cefba8e767603a61bb1d 190 SUPERFAMILY SSF48498 75 187 8.26E-12 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_31435 308643402675cefba8e767603a61bb1d 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 9 22 4.3E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_31435 308643402675cefba8e767603a61bb1d 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 30 53 4.3E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_31435 308643402675cefba8e767603a61bb1d 190 Gene3D G3DSA:1.10.357.10 50 188 6.0E-17 T 13-10-2018 RAM_31435 308643402675cefba8e767603a61bb1d 190 Gene3D G3DSA:1.10.10.60 2 49 7.2E-14 T 13-10-2018 RAM_31435 308643402675cefba8e767603a61bb1d 190 SUPERFAMILY SSF46689 3 76 8.72E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_47910 c0879605c439df8a1a102fead8918e67 283 Gene3D G3DSA:3.40.50.150 42 278 5.9E-14 T 13-10-2018 RAM_47910 c0879605c439df8a1a102fead8918e67 283 Pfam PF13649 Methyltransferase domain 92 178 5.1E-6 T 13-10-2018 RAM_47910 c0879605c439df8a1a102fead8918e67 283 SUPERFAMILY SSF53335 49 275 5.89E-19 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_15745 2c3ac81a5c0170b1cd99744392405034 183 Gene3D G3DSA:1.10.357.10 60 169 2.7E-5 T 13-10-2018 RAM_15745 2c3ac81a5c0170b1cd99744392405034 183 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 64 7.7E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_15745 2c3ac81a5c0170b1cd99744392405034 183 SUPERFAMILY SSF46689 7 79 2.77E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_15745 2c3ac81a5c0170b1cd99744392405034 183 Gene3D G3DSA:1.10.10.60 1 59 1.8E-14 T 13-10-2018 RAM_09340 d8437f658c3a487e654a89381002dba9 248 SUPERFAMILY SSF48008 89 223 4.71E-28 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_09340 d8437f658c3a487e654a89381002dba9 248 Gene3D G3DSA:1.20.120.530 88 227 2.1E-30 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_09340 d8437f658c3a487e654a89381002dba9 248 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 40 56 9.1E-5 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_09340 d8437f658c3a487e654a89381002dba9 248 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 26 40 9.1E-5 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_09340 d8437f658c3a487e654a89381002dba9 248 SMART SM00345 7 66 9.7E-15 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_09340 d8437f658c3a487e654a89381002dba9 248 Pfam PF00392 Bacterial regulatory proteins, gntR family 7 66 4.8E-17 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_09340 d8437f658c3a487e654a89381002dba9 248 Gene3D G3DSA:1.10.10.10 2 70 3.4E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_09340 d8437f658c3a487e654a89381002dba9 248 Pfam PF07729 FCD domain 92 213 4.0E-25 T 13-10-2018 IPR011711 GntR, C-terminal RAM_09340 d8437f658c3a487e654a89381002dba9 248 SUPERFAMILY SSF46785 1 70 2.93E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_09340 d8437f658c3a487e654a89381002dba9 248 SMART SM00895 92 214 6.4E-22 T 13-10-2018 IPR011711 GntR, C-terminal RAM_44130 9b79c448df6bfd7b9b2c84302a03a984 1029 SUPERFAMILY SSF52151 20 280 1.94E-15 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RAM_44130 9b79c448df6bfd7b9b2c84302a03a984 1029 TIGRFAM TIGR03607 TIGR03607: patatin-related protein 11 673 3.1E-108 T 13-10-2018 IPR019894 Patatin-related protein RAM_44130 9b79c448df6bfd7b9b2c84302a03a984 1029 Pfam PF01734 Patatin-like phospholipase 18 257 5.2E-15 T 13-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 RAM_44130 9b79c448df6bfd7b9b2c84302a03a984 1029 Pfam PF11856 Protein of unknown function (DUF3376) 318 767 1.6E-28 T 13-10-2018 IPR024282 Domain of unknown function DUF3376 RAM_08720 f7ef12a2c8b5b780ce347614652abcd1 325 SUPERFAMILY SSF53098 7 320 7.59E-64 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily RAM_17490 ce3e1f3d57f72920bbc93bc9f62ebd6c 297 Pfam PF00753 Metallo-beta-lactamase superfamily 60 270 2.6E-26 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_17490 ce3e1f3d57f72920bbc93bc9f62ebd6c 297 SMART SM00849 57 270 3.7E-15 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_17490 ce3e1f3d57f72920bbc93bc9f62ebd6c 297 SUPERFAMILY SSF56281 58 278 1.7E-37 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_17490 ce3e1f3d57f72920bbc93bc9f62ebd6c 297 Gene3D G3DSA:3.60.15.10 1 291 3.1E-73 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_46760 b7d78564cdcd1c285a97b7483bfd097f 232 PRINTS PR00409 Phthalate dioxygenase reductase family signature 72 82 4.4E-15 T 13-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RAM_46760 b7d78564cdcd1c285a97b7483bfd097f 232 PRINTS PR00409 Phthalate dioxygenase reductase family signature 149 168 4.4E-15 T 13-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RAM_46760 b7d78564cdcd1c285a97b7483bfd097f 232 PRINTS PR00409 Phthalate dioxygenase reductase family signature 174 183 4.4E-15 T 13-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RAM_46760 b7d78564cdcd1c285a97b7483bfd097f 232 PRINTS PR00409 Phthalate dioxygenase reductase family signature 82 94 4.4E-15 T 13-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RAM_46760 b7d78564cdcd1c285a97b7483bfd097f 232 SUPERFAMILY SSF63380 49 137 9.14E-19 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RAM_46760 b7d78564cdcd1c285a97b7483bfd097f 232 SUPERFAMILY SSF52343 136 202 7.99E-15 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RAM_46760 b7d78564cdcd1c285a97b7483bfd097f 232 Gene3D G3DSA:2.40.30.10 44 138 1.6E-20 T 13-10-2018 RAM_46760 b7d78564cdcd1c285a97b7483bfd097f 232 Gene3D G3DSA:3.40.50.80 144 231 7.7E-11 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RAM_35310 bbde66d83a59a8b2a3cc475ce55d18ea 784 Pfam PF07730 Histidine kinase 578 642 2.3E-13 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_35310 bbde66d83a59a8b2a3cc475ce55d18ea 784 Pfam PF07730 Histidine kinase 205 268 2.0E-9 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_35310 bbde66d83a59a8b2a3cc475ce55d18ea 784 SUPERFAMILY SSF55874 657 783 2.55E-6 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_35310 bbde66d83a59a8b2a3cc475ce55d18ea 784 Gene3D G3DSA:3.30.565.10 643 783 5.9E-20 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_35310 bbde66d83a59a8b2a3cc475ce55d18ea 784 Gene3D G3DSA:3.30.565.10 272 387 6.2E-12 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_32760 96ed45c552475e218deabb5b3e513d5c 266 Gene3D G3DSA:2.60.40.10 27 145 5.8E-15 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_32760 96ed45c552475e218deabb5b3e513d5c 266 Pfam PF17210 SdrD B-like domain 31 108 1.2E-11 T 13-10-2018 IPR033764 SD-repeat containing protein, B domain RAM_32760 96ed45c552475e218deabb5b3e513d5c 266 SUPERFAMILY SSF117074 17 90 7.06E-16 T 13-10-2018 RAM_18975 35da8937b125e69d4e5c230fdfd8bf7d 62 SUPERFAMILY SSF51735 6 59 1.17E-11 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_18975 35da8937b125e69d4e5c230fdfd8bf7d 62 Pfam PF00106 short chain dehydrogenase 6 59 1.1E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18975 35da8937b125e69d4e5c230fdfd8bf7d 62 Gene3D G3DSA:3.40.50.720 3 60 2.2E-10 T 13-10-2018 RAM_03980 69fcb933d57f7eef79cccb781497c690 344 Pfam PF00107 Zinc-binding dehydrogenase 178 306 2.3E-21 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RAM_03980 69fcb933d57f7eef79cccb781497c690 344 SUPERFAMILY SSF50129 1 167 9.13E-51 T 13-10-2018 IPR011032 GroES-like superfamily RAM_03980 69fcb933d57f7eef79cccb781497c690 344 SUPERFAMILY SSF51735 146 309 6.93E-34 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_03980 69fcb933d57f7eef79cccb781497c690 344 Gene3D G3DSA:3.40.50.720 158 306 1.6E-94 T 13-10-2018 RAM_03980 69fcb933d57f7eef79cccb781497c690 344 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 127 3.2E-24 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_03980 69fcb933d57f7eef79cccb781497c690 344 Gene3D G3DSA:3.90.180.10 4 333 1.6E-94 T 13-10-2018 RAM_37030 494d41a1863b3bb0de843c7192e7858e 492 Pfam PF00171 Aldehyde dehydrogenase family 17 487 5.5E-154 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RAM_37030 494d41a1863b3bb0de843c7192e7858e 492 Gene3D G3DSA:3.40.309.10 264 456 3.9E-165 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RAM_37030 494d41a1863b3bb0de843c7192e7858e 492 Gene3D G3DSA:3.40.605.10 26 485 3.9E-165 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RAM_37030 494d41a1863b3bb0de843c7192e7858e 492 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 260 267 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 RAM_37030 494d41a1863b3bb0de843c7192e7858e 492 SUPERFAMILY SSF53720 7 490 1.57E-152 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RAM_00940 fc00ded59ecae2c87a2ccb4961c6c781 415 Gene3D G3DSA:1.20.1250.20 2 393 1.3E-29 T 13-10-2018 RAM_00940 fc00ded59ecae2c87a2ccb4961c6c781 415 SUPERFAMILY SSF103473 6 396 4.19E-39 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_00940 fc00ded59ecae2c87a2ccb4961c6c781 415 Pfam PF05977 Transmembrane secretion effector 9 390 6.4E-27 T 13-10-2018 IPR010290 Transmembrane secretion effector RAM_31970 f5e9e44b0a38bbb2da7a91cb70d2cdaf 508 Gene3D G3DSA:3.30.300.30 407 507 1.1E-33 T 13-10-2018 RAM_31970 f5e9e44b0a38bbb2da7a91cb70d2cdaf 508 SUPERFAMILY SSF56801 12 507 7.85E-150 T 13-10-2018 RAM_31970 f5e9e44b0a38bbb2da7a91cb70d2cdaf 508 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 43 437 1.4E-129 T 13-10-2018 IPR010071 Amino acid adenylation domain RAM_31970 f5e9e44b0a38bbb2da7a91cb70d2cdaf 508 Pfam PF00501 AMP-binding enzyme 19 413 3.1E-98 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_31970 f5e9e44b0a38bbb2da7a91cb70d2cdaf 508 ProSitePatterns PS00455 Putative AMP-binding domain signature. 156 167 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_31970 f5e9e44b0a38bbb2da7a91cb70d2cdaf 508 Gene3D G3DSA:3.40.50.12780 9 405 4.6E-132 T 13-10-2018 RAM_31970 f5e9e44b0a38bbb2da7a91cb70d2cdaf 508 Pfam PF13193 AMP-binding enzyme C-terminal domain 421 497 9.8E-12 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_04810 158524ed065936bb58c2dab4e9a59a1c 152 Gene3D G3DSA:1.10.10.10 3 140 4.3E-33 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_04810 158524ed065936bb58c2dab4e9a59a1c 152 SUPERFAMILY SSF46785 13 137 2.26E-29 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_04810 158524ed065936bb58c2dab4e9a59a1c 152 PRINTS PR00598 Bacterial regulatory protein MarR family signature 50 66 4.2E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_04810 158524ed065936bb58c2dab4e9a59a1c 152 PRINTS PR00598 Bacterial regulatory protein MarR family signature 86 102 4.2E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_04810 158524ed065936bb58c2dab4e9a59a1c 152 PRINTS PR00598 Bacterial regulatory protein MarR family signature 67 82 4.2E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_04810 158524ed065936bb58c2dab4e9a59a1c 152 PRINTS PR00598 Bacterial regulatory protein MarR family signature 116 136 4.2E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_04810 158524ed065936bb58c2dab4e9a59a1c 152 SMART SM00347 27 126 2.7E-19 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_04810 158524ed065936bb58c2dab4e9a59a1c 152 Pfam PF12802 MarR family 32 90 9.8E-14 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_18045 1e9745472c7f6eb85fcba8ea3c6ff180 319 Gene3D G3DSA:3.40.50.1820 28 306 4.8E-80 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_18045 1e9745472c7f6eb85fcba8ea3c6ff180 319 PRINTS PR00412 Epoxide hydrolase signature 119 132 1.6E-7 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_18045 1e9745472c7f6eb85fcba8ea3c6ff180 319 PRINTS PR00412 Epoxide hydrolase signature 282 304 1.6E-7 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_18045 1e9745472c7f6eb85fcba8ea3c6ff180 319 PRINTS PR00412 Epoxide hydrolase signature 56 74 1.6E-7 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_18045 1e9745472c7f6eb85fcba8ea3c6ff180 319 Pfam PF00561 alpha/beta hydrolase fold 50 168 2.7E-20 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_18045 1e9745472c7f6eb85fcba8ea3c6ff180 319 SUPERFAMILY SSF53474 29 306 3.31E-63 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_45610 2ad044797bcb48d72b80a28ccc0f35b4 206 Gene3D G3DSA:3.40.30.10 37 206 7.0E-27 T 13-10-2018 RAM_45610 2ad044797bcb48d72b80a28ccc0f35b4 206 Pfam PF00578 AhpC/TSA family 41 183 7.3E-20 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 RAM_45610 2ad044797bcb48d72b80a28ccc0f35b4 206 SUPERFAMILY SSF52833 40 206 1.27E-23 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RAM_27145 2b69eb17d0101aac37f91e86851a8368 507 Pfam PF02397 Bacterial sugar transferase 314 501 3.0E-66 T 13-10-2018 IPR003362 Bacterial sugar transferase RAM_27145 2b69eb17d0101aac37f91e86851a8368 507 TIGRFAM TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 63 507 7.2E-119 T 13-10-2018 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase RAM_19105 7f00853ef74484c5bc8e54553331b64d 301 SUPERFAMILY SSF46689 190 239 4.12E-6 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_19105 7f00853ef74484c5bc8e54553331b64d 301 Gene3D G3DSA:1.10.10.60 186 294 1.2E-24 T 13-10-2018 RAM_19105 7f00853ef74484c5bc8e54553331b64d 301 Pfam PF12833 Helix-turn-helix domain 212 290 9.0E-18 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_19105 7f00853ef74484c5bc8e54553331b64d 301 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 273 289 3.2E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RAM_19105 7f00853ef74484c5bc8e54553331b64d 301 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 258 273 3.2E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RAM_19105 7f00853ef74484c5bc8e54553331b64d 301 SUPERFAMILY SSF46689 242 291 1.97E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_19105 7f00853ef74484c5bc8e54553331b64d 301 SMART SM00342 206 289 7.9E-27 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_19105 7f00853ef74484c5bc8e54553331b64d 301 Pfam PF12852 Cupin 2 176 4.8E-37 T 13-10-2018 IPR032783 AraC-type transcription regulator, ligand-binding domain RAM_19105 7f00853ef74484c5bc8e54553331b64d 301 SUPERFAMILY SSF51215 24 174 2.09E-7 T 13-10-2018 IPR037923 Transcription regulator HTH-like RAM_27060 8208853510b5fa4bff6e53f285a55c09 97 SUPERFAMILY SSF47336 14 86 3.8E-15 T 13-10-2018 IPR036736 ACP-like superfamily RAM_27060 8208853510b5fa4bff6e53f285a55c09 97 Pfam PF00550 Phosphopantetheine attachment site 23 85 3.9E-14 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_27060 8208853510b5fa4bff6e53f285a55c09 97 Gene3D G3DSA:1.10.1200.10 4 94 5.7E-17 T 13-10-2018 IPR036736 ACP-like superfamily RAM_27060 8208853510b5fa4bff6e53f285a55c09 97 SMART SM00823 Phosphopantetheine attachment site 20 89 6.5E-8 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_31810 9714626c155985d454ebf0d905971e7a 332 SUPERFAMILY SSF63825 69 220 5.49E-7 T 13-10-2018 RAM_24245 463c5f987517eb93321796e1a6ca6f68 259 Gene3D G3DSA:3.40.50.1820 16 247 9.0E-58 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_24245 463c5f987517eb93321796e1a6ca6f68 259 Pfam PF00975 Thioesterase domain 18 237 3.7E-40 T 13-10-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 RAM_24245 463c5f987517eb93321796e1a6ca6f68 259 SUPERFAMILY SSF53474 8 245 1.22E-41 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_00850 ee126804d887a0b7d4daee3d14d40dc7 153 Pfam PF05901 Excalibur calcium-binding domain 32 66 1.5E-5 T 13-10-2018 IPR008613 Excalibur calcium-binding domain RAM_32175 7d1e91eec68916c41e6afb78fd89be4f 297 SUPERFAMILY SSF52540 2 256 4.1E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_32175 7d1e91eec68916c41e6afb78fd89be4f 297 Gene3D G3DSA:3.40.50.300 1 266 2.3E-59 T 13-10-2018 RAM_32175 7d1e91eec68916c41e6afb78fd89be4f 297 Pfam PF13614 AAA domain 3 182 2.1E-35 T 13-10-2018 IPR025669 AAA domain RAM_29455 08638c9e6ba3c9cb2df916bf48f0330d 344 Pfam PF00107 Zinc-binding dehydrogenase 178 306 1.3E-18 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RAM_29455 08638c9e6ba3c9cb2df916bf48f0330d 344 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 130 4.4E-23 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_29455 08638c9e6ba3c9cb2df916bf48f0330d 344 Gene3D G3DSA:3.90.180.10 4 333 3.8E-94 T 13-10-2018 RAM_29455 08638c9e6ba3c9cb2df916bf48f0330d 344 SUPERFAMILY SSF50129 1 166 5.33E-47 T 13-10-2018 IPR011032 GroES-like superfamily RAM_29455 08638c9e6ba3c9cb2df916bf48f0330d 344 Gene3D G3DSA:3.40.50.720 158 306 3.8E-94 T 13-10-2018 RAM_29455 08638c9e6ba3c9cb2df916bf48f0330d 344 SUPERFAMILY SSF51735 148 310 2.56E-33 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_42120 bd69eb14b232ac758807b083546da7d4 136 SMART SM00028 85 118 330.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_42120 bd69eb14b232ac758807b083546da7d4 136 SMART SM00028 51 84 0.0061 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_42120 bd69eb14b232ac758807b083546da7d4 136 Pfam PF13432 Tetratricopeptide repeat 56 110 6.3E-7 T 13-10-2018 RAM_42120 bd69eb14b232ac758807b083546da7d4 136 Gene3D G3DSA:1.25.40.10 19 132 5.1E-15 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_42120 bd69eb14b232ac758807b083546da7d4 136 SUPERFAMILY SSF48452 21 116 6.03E-14 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_24755 e433cdbf1d1ba63d6138280e5998ff27 117 SUPERFAMILY SSF54593 3 115 6.46E-23 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_24755 e433cdbf1d1ba63d6138280e5998ff27 117 Gene3D G3DSA:3.10.180.10 8 116 7.2E-21 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_24755 e433cdbf1d1ba63d6138280e5998ff27 117 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 109 6.0E-7 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RAM_35815 5ceb56fcd29c60ef2d27834d2bbae7cf 544 Gene3D G3DSA:3.40.50.12780 51 444 2.1E-79 T 13-10-2018 RAM_35815 5ceb56fcd29c60ef2d27834d2bbae7cf 544 Pfam PF00501 AMP-binding enzyme 59 453 1.1E-63 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_35815 5ceb56fcd29c60ef2d27834d2bbae7cf 544 Gene3D G3DSA:3.30.300.310 449 544 3.6E-31 T 13-10-2018 RAM_35815 5ceb56fcd29c60ef2d27834d2bbae7cf 544 ProSitePatterns PS00455 Putative AMP-binding domain signature. 210 221 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_35815 5ceb56fcd29c60ef2d27834d2bbae7cf 544 SUPERFAMILY SSF56801 57 543 3.01E-118 T 13-10-2018 RAM_35815 5ceb56fcd29c60ef2d27834d2bbae7cf 544 Pfam PF13193 AMP-binding enzyme C-terminal domain 462 537 4.9E-20 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_04475 fc70d1b885b13c1b60bacaf62b78f8df 212 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 20 33 3.6E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_04475 fc70d1b885b13c1b60bacaf62b78f8df 212 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 40 63 3.6E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_04475 fc70d1b885b13c1b60bacaf62b78f8df 212 SUPERFAMILY SSF48498 86 191 8.09E-19 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_04475 fc70d1b885b13c1b60bacaf62b78f8df 212 SUPERFAMILY SSF46689 8 90 5.49E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_04475 fc70d1b885b13c1b60bacaf62b78f8df 212 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 65 8.2E-13 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_04475 fc70d1b885b13c1b60bacaf62b78f8df 212 Gene3D G3DSA:1.10.357.10 8 199 5.2E-51 T 13-10-2018 RAM_37155 420b03367e4d1ad2b30169414c25d7bd 377 SUPERFAMILY SSF55874 258 365 1.09E-8 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_37155 420b03367e4d1ad2b30169414c25d7bd 377 Pfam PF07730 Histidine kinase 176 239 2.5E-13 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_37155 420b03367e4d1ad2b30169414c25d7bd 377 Gene3D G3DSA:3.30.565.10 250 371 1.5E-21 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_12425 6a1bd674a4d069e958f80fd03375581c 296 SUPERFAMILY SSF161098 26 296 2.62E-60 T 13-10-2018 IPR035906 MetI-like superfamily RAM_12425 6a1bd674a4d069e958f80fd03375581c 296 Gene3D G3DSA:1.10.3720.10 20 286 3.8E-54 T 13-10-2018 IPR035906 MetI-like superfamily RAM_12425 6a1bd674a4d069e958f80fd03375581c 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 282 2.3E-16 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_02330 f0f1e889806f4aac6fe0de0d1cec2a04 418 Pfam PF13439 Glycosyltransferase Family 4 17 198 2.3E-30 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 RAM_02330 f0f1e889806f4aac6fe0de0d1cec2a04 418 Gene3D G3DSA:3.40.50.2000 2 399 1.9E-126 T 13-10-2018 RAM_02330 f0f1e889806f4aac6fe0de0d1cec2a04 418 SUPERFAMILY SSF53756 16 402 2.02E-81 T 13-10-2018 RAM_02330 f0f1e889806f4aac6fe0de0d1cec2a04 418 Pfam PF00534 Glycosyl transferases group 1 207 379 1.5E-32 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 RAM_02330 f0f1e889806f4aac6fe0de0d1cec2a04 418 TIGRFAM TIGR03449 mycothiol_MshA: D-inositol-3-phosphate glycosyltransferase 1 404 3.1E-193 T 13-10-2018 IPR017814 Mycothiol biosynthesis protein, MshA GO:0008375|GO:0010125 RAM_02330 f0f1e889806f4aac6fe0de0d1cec2a04 418 Hamap MF_01695 D-inositol-3-phosphate glycosyltransferase [mshA]. 1 407 50.555 T 13-10-2018 IPR017814 Mycothiol biosynthesis protein, MshA GO:0008375|GO:0010125 RAM_02330 f0f1e889806f4aac6fe0de0d1cec2a04 418 Gene3D G3DSA:3.40.50.2000 194 383 1.9E-126 T 13-10-2018 RAM_33535 1f18540240dfb2ef8e0e503a5f1c1acb 200 ProDom PD338207 MEMBRANE INTEGRAL TRANSMEMBRANE PLASMID PROBABLE MB0995 RV0970/MT0998 1 108 9.0E-5 T 13-10-2018 RAM_33535 1f18540240dfb2ef8e0e503a5f1c1acb 200 Pfam PF17197 Domain of unknown function (DUF5134) 34 199 3.1E-29 T 13-10-2018 IPR033458 Protein of unknown function DUF5134 RAM_16295 0e80621c047a30d9e0e7677b11b8739a 189 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 45 96 1.1E-17 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_16295 0e80621c047a30d9e0e7677b11b8739a 189 SUPERFAMILY SSF53706 43 189 5.5E-43 T 13-10-2018 RAM_16295 0e80621c047a30d9e0e7677b11b8739a 189 SMART SM00926 44 98 9.9E-19 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_16295 0e80621c047a30d9e0e7677b11b8739a 189 Gene3D G3DSA:3.40.50.740 103 189 2.2E-27 T 13-10-2018 RAM_16295 0e80621c047a30d9e0e7677b11b8739a 189 Gene3D G3DSA:2.20.25.90 37 102 1.0E-18 T 13-10-2018 RAM_27550 6cf5d0deff50d58f1343335b51e8f286 396 Pfam PF07730 Histidine kinase 202 267 1.1E-16 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_27550 6cf5d0deff50d58f1343335b51e8f286 396 PIRSF PIRSF037434 5 396 1.6E-71 T 13-10-2018 IPR017205 Signal transduction histidine kinase, ChrS RAM_27550 6cf5d0deff50d58f1343335b51e8f286 396 PRINTS PR00344 Bacterial sensor protein C-terminal signature 358 376 3.4E-5 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_27550 6cf5d0deff50d58f1343335b51e8f286 396 PRINTS PR00344 Bacterial sensor protein C-terminal signature 343 357 3.4E-5 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_27550 6cf5d0deff50d58f1343335b51e8f286 396 PRINTS PR00344 Bacterial sensor protein C-terminal signature 382 395 3.4E-5 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_27550 6cf5d0deff50d58f1343335b51e8f286 396 SMART SM00387 307 396 4.5E-7 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_27550 6cf5d0deff50d58f1343335b51e8f286 396 Gene3D G3DSA:3.30.565.10 270 396 1.9E-29 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_27550 6cf5d0deff50d58f1343335b51e8f286 396 SUPERFAMILY SSF55874 303 394 3.54E-19 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_27550 6cf5d0deff50d58f1343335b51e8f286 396 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 312 393 6.7E-7 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_07425 14e381a6b1d5b4da95154e75ecead855 548 SUPERFAMILY SSF56801 16 532 1.44E-163 T 13-10-2018 RAM_07425 14e381a6b1d5b4da95154e75ecead855 548 ProSitePatterns PS00455 Putative AMP-binding domain signature. 186 197 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_07425 14e381a6b1d5b4da95154e75ecead855 548 Gene3D G3DSA:3.30.300.30 432 536 6.4E-31 T 13-10-2018 RAM_07425 14e381a6b1d5b4da95154e75ecead855 548 Gene3D G3DSA:3.40.50.12780 14 431 1.8E-125 T 13-10-2018 RAM_07425 14e381a6b1d5b4da95154e75ecead855 548 Pfam PF13193 AMP-binding enzyme C-terminal domain 447 523 7.5E-17 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_07425 14e381a6b1d5b4da95154e75ecead855 548 Pfam PF00501 AMP-binding enzyme 23 438 3.7E-115 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_42370 0c9f2e3afd546b6e2a4c10b46ab1ca7d 278 Pfam PF01026 TatD related DNase 20 270 1.9E-69 T 13-10-2018 IPR001130 TatD family GO:0016788 RAM_42370 0c9f2e3afd546b6e2a4c10b46ab1ca7d 278 SUPERFAMILY SSF51556 19 272 9.03E-78 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_42370 0c9f2e3afd546b6e2a4c10b46ab1ca7d 278 Gene3D G3DSA:3.20.20.140 13 272 2.8E-81 T 13-10-2018 RAM_42370 0c9f2e3afd546b6e2a4c10b46ab1ca7d 278 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 19 271 1.7E-78 T 13-10-2018 IPR015991 Uncharacterised hydrolase TatD-type GO:0004536 RAM_42370 0c9f2e3afd546b6e2a4c10b46ab1ca7d 278 PIRSF PIRSF005902 11 275 5.8E-73 T 13-10-2018 IPR001130 TatD family GO:0016788 RAM_42370 0c9f2e3afd546b6e2a4c10b46ab1ca7d 278 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 143 153 - T 13-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 RAM_35780 e10764876c4f43aa5c1154f7ad7030b5 305 SUPERFAMILY SSF63829 4 218 2.18E-42 T 13-10-2018 RAM_35780 e10764876c4f43aa5c1154f7ad7030b5 305 Pfam PF03088 Strictosidine synthase 105 185 7.4E-15 T 13-10-2018 IPR018119 Strictosidine synthase, conserved region GO:0009058|GO:0016844 RAM_35780 e10764876c4f43aa5c1154f7ad7030b5 305 Gene3D G3DSA:2.120.10.30 4 302 4.6E-57 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RAM_12355 f001103a4ce67c5f72693b1ebecc7471 345 Pfam PF02470 MlaD protein 40 112 9.6E-17 T 13-10-2018 IPR003399 Mce/MlaD RAM_12355 f001103a4ce67c5f72693b1ebecc7471 345 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 10 295 3.2E-65 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_31330 091ee4b0550971afa8cac4808b2ef1c1 157 PIRSF PIRSF021513 1 157 2.0E-38 T 13-10-2018 IPR016791 Rubromycin-type polyketide biosynthesis protein, GrhN/RubW, predicted RAM_03610 099f87d6fb2efd973e360cdf23b2a66a 201 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 90 1.5E-28 T 13-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 RAM_03610 099f87d6fb2efd973e360cdf23b2a66a 201 SUPERFAMILY SSF55174 3 201 6.15E-65 T 13-10-2018 RAM_03610 099f87d6fb2efd973e360cdf23b2a66a 201 Gene3D G3DSA:3.10.290.10 90 186 1.5E-70 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 RAM_03610 099f87d6fb2efd973e360cdf23b2a66a 201 ProSitePatterns PS00632 Ribosomal protein S4 signature. 89 113 - T 13-10-2018 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6790901|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_03610 099f87d6fb2efd973e360cdf23b2a66a 201 Gene3D G3DSA:1.10.1050.10 6 201 1.5E-70 T 13-10-2018 RAM_03610 099f87d6fb2efd973e360cdf23b2a66a 201 SMART SM00363 91 157 7.2E-14 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_03610 099f87d6fb2efd973e360cdf23b2a66a 201 SMART SM01390 3 90 5.7E-42 T 13-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 RAM_03610 099f87d6fb2efd973e360cdf23b2a66a 201 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 201 1.7E-76 T 13-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 RAM_03610 099f87d6fb2efd973e360cdf23b2a66a 201 Pfam PF01479 S4 domain 92 137 2.3E-18 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_03610 099f87d6fb2efd973e360cdf23b2a66a 201 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 201 34.333 T 13-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 RAM_14425 56fc3524afc2a10882788ef0bd44ed87 648 Pfam PF03109 ABC1 family 202 306 2.3E-30 T 13-10-2018 IPR004147 UbiB domain RAM_14425 56fc3524afc2a10882788ef0bd44ed87 648 SUPERFAMILY SSF56112 184 461 6.42E-28 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_08690 776e096e296eb4763858d014b1d84577 137 ProDom PD026347 LSR2-LIKE LSR2 ANTIGEN IMMUNE PRECURSOR RESPONSE SIGNAL PLASMID LYSYL GP61 1 105 2.0E-16 T 13-10-2018 IPR024412 Lsr2 RAM_08690 776e096e296eb4763858d014b1d84577 137 Gene3D G3DSA:1.20.890.50 78 117 4.2E-14 T 13-10-2018 RAM_08690 776e096e296eb4763858d014b1d84577 137 Pfam PF11774 Lsr2 2 111 1.9E-40 T 13-10-2018 IPR024412 Lsr2 RAM_08690 776e096e296eb4763858d014b1d84577 137 Gene3D G3DSA:3.30.60.230 1 60 1.8E-25 T 13-10-2018 RAM_35730 43e28921407b3c3dca7d628fcbacd75e 264 Pfam PF03301 Tryptophan 2,3-dioxygenase 8 137 8.9E-39 T 13-10-2018 IPR004981 Tryptophan 2,3-dioxygenase GO:0004833|GO:0019441|GO:0020037 KEGG: 00380+1.13.11.11|Reactome: R-HSA-71240 RAM_35730 43e28921407b3c3dca7d628fcbacd75e 264 Pfam PF03301 Tryptophan 2,3-dioxygenase 188 263 5.7E-20 T 13-10-2018 IPR004981 Tryptophan 2,3-dioxygenase GO:0004833|GO:0019441|GO:0020037 KEGG: 00380+1.13.11.11|Reactome: R-HSA-71240 RAM_35730 43e28921407b3c3dca7d628fcbacd75e 264 Gene3D G3DSA:1.20.58.480 11 264 2.7E-89 T 13-10-2018 RAM_35730 43e28921407b3c3dca7d628fcbacd75e 264 SUPERFAMILY SSF140959 13 263 8.5E-79 T 13-10-2018 IPR037217 Tryptophan/Indoleamine 2,3-dioxygenase-like GO:0019441|GO:0020037|GO:0046872 KEGG: 00380+1.13.11.11|Reactome: R-HSA-71240 RAM_35730 43e28921407b3c3dca7d628fcbacd75e 264 Hamap MF_01972 Tryptophan 2,3-dioxygenase [kynA]. 7 264 35.688 T 13-10-2018 IPR004981 Tryptophan 2,3-dioxygenase GO:0004833|GO:0019441|GO:0020037 KEGG: 00380+1.13.11.11|Reactome: R-HSA-71240 RAM_20570 29c47f9dfaef6d7fdde6276fb6658de8 67 SMART SM00923 3 53 3.1E-24 T 13-10-2018 IPR005153 MbtH-like domain RAM_20570 29c47f9dfaef6d7fdde6276fb6658de8 67 Gene3D G3DSA:3.90.820.10 1 67 3.8E-30 T 13-10-2018 RAM_20570 29c47f9dfaef6d7fdde6276fb6658de8 67 Pfam PF03621 MbtH-like protein 2 52 9.2E-23 T 13-10-2018 IPR005153 MbtH-like domain RAM_20570 29c47f9dfaef6d7fdde6276fb6658de8 67 SUPERFAMILY SSF160582 2 66 4.45E-25 T 13-10-2018 IPR038020 MbtH-like domain superfamily RAM_16770 fd3f1141b0fdc2c7b9b9112d66f8b0a0 342 ProSitePatterns PS00356 LacI-type HTH domain signature. 13 31 - T 13-10-2018 RAM_16770 fd3f1141b0fdc2c7b9b9112d66f8b0a0 342 SUPERFAMILY SSF53822 83 341 2.75E-61 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_16770 fd3f1141b0fdc2c7b9b9112d66f8b0a0 342 Gene3D G3DSA:3.40.50.2300 175 303 5.6E-65 T 13-10-2018 RAM_16770 fd3f1141b0fdc2c7b9b9112d66f8b0a0 342 SMART SM00354 10 80 1.8E-19 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_16770 fd3f1141b0fdc2c7b9b9112d66f8b0a0 342 Gene3D G3DSA:1.10.260.40 10 68 6.7E-18 T 13-10-2018 RAM_16770 fd3f1141b0fdc2c7b9b9112d66f8b0a0 342 Pfam PF13377 Periplasmic binding protein-like domain 183 341 2.7E-34 T 13-10-2018 RAM_16770 fd3f1141b0fdc2c7b9b9112d66f8b0a0 342 Pfam PF00356 Bacterial regulatory proteins, lacI family 12 56 2.2E-15 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_16770 fd3f1141b0fdc2c7b9b9112d66f8b0a0 342 Gene3D G3DSA:3.40.50.2300 83 324 5.6E-65 T 13-10-2018 RAM_16770 fd3f1141b0fdc2c7b9b9112d66f8b0a0 342 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 22 32 1.2E-5 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_16770 fd3f1141b0fdc2c7b9b9112d66f8b0a0 342 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 12 22 1.2E-5 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_16770 fd3f1141b0fdc2c7b9b9112d66f8b0a0 342 SUPERFAMILY SSF47413 10 61 6.75E-13 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_24390 a8b8263a1ca8eba3faf837adda60fff1 131 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 12 84 7.7E-28 T 13-10-2018 IPR025161 Putative transposase IS4/IS5 family RAM_25735 a8b8263a1ca8eba3faf837adda60fff1 131 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 12 84 7.7E-28 T 13-10-2018 IPR025161 Putative transposase IS4/IS5 family RAM_29750 a8b8263a1ca8eba3faf837adda60fff1 131 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 12 84 7.7E-28 T 13-10-2018 IPR025161 Putative transposase IS4/IS5 family RAM_18735 97f9ea451088cceac0a1fbcbe9001934 428 Gene3D G3DSA:3.40.50.1820 28 292 1.3E-68 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_18735 97f9ea451088cceac0a1fbcbe9001934 428 Pfam PF00652 Ricin-type beta-trefoil lectin domain 303 424 2.9E-30 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_18735 97f9ea451088cceac0a1fbcbe9001934 428 SUPERFAMILY SSF50370 302 425 1.1E-38 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_18735 97f9ea451088cceac0a1fbcbe9001934 428 Pfam PF01738 Dienelactone hydrolase family 130 245 7.0E-9 T 13-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 RAM_18735 97f9ea451088cceac0a1fbcbe9001934 428 SUPERFAMILY SSF53474 46 269 2.37E-41 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_18735 97f9ea451088cceac0a1fbcbe9001934 428 Gene3D G3DSA:2.80.10.50 298 426 3.1E-41 T 13-10-2018 RAM_18735 97f9ea451088cceac0a1fbcbe9001934 428 SMART SM00458 300 427 5.5E-33 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_22545 f575972fab86833c398bbbff83808a32 327 Gene3D G3DSA:3.40.50.2300 157 282 1.4E-66 T 13-10-2018 RAM_22545 f575972fab86833c398bbbff83808a32 327 Pfam PF00356 Bacterial regulatory proteins, lacI family 4 47 8.0E-16 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_22545 f575972fab86833c398bbbff83808a32 327 SUPERFAMILY SSF47413 3 48 7.13E-13 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_22545 f575972fab86833c398bbbff83808a32 327 Gene3D G3DSA:1.10.260.40 1 53 3.6E-18 T 13-10-2018 RAM_22545 f575972fab86833c398bbbff83808a32 327 Pfam PF13377 Periplasmic binding protein-like domain 165 322 2.0E-35 T 13-10-2018 RAM_22545 f575972fab86833c398bbbff83808a32 327 Gene3D G3DSA:3.40.50.2300 63 303 1.4E-66 T 13-10-2018 RAM_22545 f575972fab86833c398bbbff83808a32 327 SMART SM00354 2 72 8.8E-15 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_22545 f575972fab86833c398bbbff83808a32 327 SUPERFAMILY SSF53822 63 325 9.6E-61 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_09215 62461d1f7dc5f3013dfe1ce84c6e07e2 424 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 7 420 50.384 T 13-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 RAM_09215 62461d1f7dc5f3013dfe1ce84c6e07e2 424 PIRSF PIRSF000412 1 423 2.9E-156 T 13-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 RAM_09215 62461d1f7dc5f3013dfe1ce84c6e07e2 424 Pfam PF00464 Serine hydroxymethyltransferase 8 389 1.2E-160 T 13-10-2018 IPR039429 Serine hydroxymethyltransferase-like domain KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 RAM_09215 62461d1f7dc5f3013dfe1ce84c6e07e2 424 SUPERFAMILY SSF53383 4 420 8.16E-172 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_09215 62461d1f7dc5f3013dfe1ce84c6e07e2 424 Gene3D G3DSA:3.40.640.10 37 278 6.0E-175 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_09215 62461d1f7dc5f3013dfe1ce84c6e07e2 424 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 222 238 - T 13-10-2018 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 RAM_09215 62461d1f7dc5f3013dfe1ce84c6e07e2 424 Gene3D G3DSA:3.90.1150.10 12 417 6.0E-175 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_05255 56f5f74f99aa999ddd85996d24d71f8a 356 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 98 133 - T 13-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 RAM_05255 56f5f74f99aa999ddd85996d24d71f8a 356 Pfam PF01546 Peptidase family M20/M25/M40 67 355 6.7E-19 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 RAM_05255 56f5f74f99aa999ddd85996d24d71f8a 356 SUPERFAMILY SSF55031 171 272 4.78E-19 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain RAM_05255 56f5f74f99aa999ddd85996d24d71f8a 356 TIGRFAM TIGR01900 dapE-gram_pos: succinyl-diaminopimelate desuccinylase 6 356 5.6E-151 T 13-10-2018 IPR010174 Succinyl-diaminopimelate desuccinylase, DapE GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 RAM_05255 56f5f74f99aa999ddd85996d24d71f8a 356 Gene3D G3DSA:3.40.630.10 16 345 4.2E-91 T 13-10-2018 RAM_05255 56f5f74f99aa999ddd85996d24d71f8a 356 Pfam PF07687 Peptidase dimerisation domain 171 268 1.7E-12 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain RAM_05255 56f5f74f99aa999ddd85996d24d71f8a 356 SUPERFAMILY SSF53187 8 355 1.56E-39 T 13-10-2018 RAM_05255 56f5f74f99aa999ddd85996d24d71f8a 356 Gene3D G3DSA:3.30.70.360 171 279 4.2E-91 T 13-10-2018 RAM_23935 a12be03dd4f06dd41a2f5e9c4bd4960c 428 SUPERFAMILY SSF88946 9 77 1.37E-12 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_23935 a12be03dd4f06dd41a2f5e9c4bd4960c 428 SUPERFAMILY SSF88659 107 166 6.32E-9 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_23935 a12be03dd4f06dd41a2f5e9c4bd4960c 428 Pfam PF08281 Sigma-70, region 4 113 164 6.5E-7 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_23935 a12be03dd4f06dd41a2f5e9c4bd4960c 428 Pfam PF04542 Sigma-70 region 2 18 76 2.9E-10 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_23935 a12be03dd4f06dd41a2f5e9c4bd4960c 428 Gene3D G3DSA:1.10.10.10 99 168 1.1E-5 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_23935 a12be03dd4f06dd41a2f5e9c4bd4960c 428 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 11 166 2.5E-12 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_23935 a12be03dd4f06dd41a2f5e9c4bd4960c 428 Gene3D G3DSA:1.10.1740.10 4 74 2.2E-7 T 13-10-2018 RAM_08100 8009f715e8e60d5b429e566276e55339 327 SMART SM00354 1 69 2.3E-24 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_08100 8009f715e8e60d5b429e566276e55339 327 Gene3D G3DSA:3.40.50.2300 158 320 7.1E-67 T 13-10-2018 RAM_08100 8009f715e8e60d5b429e566276e55339 327 Gene3D G3DSA:1.10.260.40 1 56 8.8E-21 T 13-10-2018 RAM_08100 8009f715e8e60d5b429e566276e55339 327 ProSitePatterns PS00356 LacI-type HTH domain signature. 1 19 - T 13-10-2018 RAM_08100 8009f715e8e60d5b429e566276e55339 327 Gene3D G3DSA:3.40.50.2300 60 315 7.1E-67 T 13-10-2018 RAM_08100 8009f715e8e60d5b429e566276e55339 327 SUPERFAMILY SSF53822 59 322 5.1E-61 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_08100 8009f715e8e60d5b429e566276e55339 327 Pfam PF13377 Periplasmic binding protein-like domain 166 322 1.3E-28 T 13-10-2018 RAM_08100 8009f715e8e60d5b429e566276e55339 327 Pfam PF00356 Bacterial regulatory proteins, lacI family 1 45 7.4E-17 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_08100 8009f715e8e60d5b429e566276e55339 327 SUPERFAMILY SSF47413 1 56 3.64E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_38485 ac0c48ef62f4098480737a3541acca57 351 Gene3D G3DSA:3.40.50.2300 98 337 7.4E-69 T 13-10-2018 RAM_38485 ac0c48ef62f4098480737a3541acca57 351 SMART SM00354 21 91 4.1E-27 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_38485 ac0c48ef62f4098480737a3541acca57 351 Pfam PF13377 Periplasmic binding protein-like domain 189 346 1.2E-36 T 13-10-2018 RAM_38485 ac0c48ef62f4098480737a3541acca57 351 Gene3D G3DSA:1.10.260.40 13 78 3.8E-23 T 13-10-2018 RAM_38485 ac0c48ef62f4098480737a3541acca57 351 Gene3D G3DSA:3.40.50.2300 179 340 7.4E-69 T 13-10-2018 RAM_38485 ac0c48ef62f4098480737a3541acca57 351 SUPERFAMILY SSF53822 80 350 5.89E-59 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_38485 ac0c48ef62f4098480737a3541acca57 351 SUPERFAMILY SSF47413 22 77 6.44E-17 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_38485 ac0c48ef62f4098480737a3541acca57 351 Pfam PF00356 Bacterial regulatory proteins, lacI family 24 68 7.9E-18 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_00365 96d5cd1932582632d04d63053dc400d8 251 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 19 240 6.1E-56 T 13-10-2018 RAM_00365 96d5cd1932582632d04d63053dc400d8 251 SUPERFAMILY SSF51735 10 241 1.18E-67 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_00365 96d5cd1932582632d04d63053dc400d8 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 121 137 8.2E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_00365 96d5cd1932582632d04d63053dc400d8 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 8.2E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_00365 96d5cd1932582632d04d63053dc400d8 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 203 223 8.2E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_00365 96d5cd1932582632d04d63053dc400d8 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 185 8.2E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_00365 96d5cd1932582632d04d63053dc400d8 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 74 85 8.2E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_00365 96d5cd1932582632d04d63053dc400d8 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 166 8.2E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_00365 96d5cd1932582632d04d63053dc400d8 251 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 134 162 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_00365 96d5cd1932582632d04d63053dc400d8 251 Gene3D G3DSA:3.40.50.720 6 248 3.5E-68 T 13-10-2018 RAM_36755 3b3f32097a5dce7c56d2933da899f737 914 Gene3D G3DSA:3.40.50.300 669 906 4.4E-62 T 13-10-2018 RAM_36755 3b3f32097a5dce7c56d2933da899f737 914 SUPERFAMILY SSF52540 672 903 3.22E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_36755 3b3f32097a5dce7c56d2933da899f737 914 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 882 904 3.6E-6 T 13-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RAM_36755 3b3f32097a5dce7c56d2933da899f737 914 Pfam PF02653 Branched-chain amino acid transport system / permease component 350 621 6.3E-26 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 RAM_36755 3b3f32097a5dce7c56d2933da899f737 914 Pfam PF02653 Branched-chain amino acid transport system / permease component 10 297 6.8E-22 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 RAM_36755 3b3f32097a5dce7c56d2933da899f737 914 Pfam PF00005 ABC transporter 690 833 7.4E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_36755 3b3f32097a5dce7c56d2933da899f737 914 SMART SM00382 698 881 3.1E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_26370 1a84cd3c6e83b3a81e1ba638154905b7 1209 Gene3D G3DSA:3.20.20.20 334 635 4.6E-124 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_26370 1a84cd3c6e83b3a81e1ba638154905b7 1209 Pfam PF02607 B12 binding domain 651 723 3.7E-26 T 13-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_26370 1a84cd3c6e83b3a81e1ba638154905b7 1209 PIRSF PIRSF000381 5 1176 0.0 T 13-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_26370 1a84cd3c6e83b3a81e1ba638154905b7 1209 TIGRFAM TIGR02082 metH: methionine synthase 15 1173 0.0 T 13-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_26370 1a84cd3c6e83b3a81e1ba638154905b7 1209 SUPERFAMILY SSF56507 900 1208 6.41E-102 T 13-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_26370 1a84cd3c6e83b3a81e1ba638154905b7 1209 Gene3D G3DSA:3.40.50.280 744 894 7.8E-52 T 13-10-2018 RAM_26370 1a84cd3c6e83b3a81e1ba638154905b7 1209 SUPERFAMILY SSF47644 643 729 2.09E-28 T 13-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_26370 1a84cd3c6e83b3a81e1ba638154905b7 1209 Pfam PF00809 Pterin binding enzyme 353 591 5.1E-50 T 13-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_26370 1a84cd3c6e83b3a81e1ba638154905b7 1209 SMART SM01018 647 730 1.5E-44 T 13-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_26370 1a84cd3c6e83b3a81e1ba638154905b7 1209 Gene3D G3DSA:3.20.20.330 5 333 2.1E-123 T 13-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 RAM_26370 1a84cd3c6e83b3a81e1ba638154905b7 1209 Pfam PF02574 Homocysteine S-methyltransferase 21 317 7.9E-76 T 13-10-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 RAM_26370 1a84cd3c6e83b3a81e1ba638154905b7 1209 SUPERFAMILY SSF82282 10 392 1.83E-115 T 13-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 RAM_26370 1a84cd3c6e83b3a81e1ba638154905b7 1209 SUPERFAMILY SSF51717 349 623 1.2E-81 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_26370 1a84cd3c6e83b3a81e1ba638154905b7 1209 Gene3D G3DSA:3.10.196.10 902 1202 1.1E-110 T 13-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_26370 1a84cd3c6e83b3a81e1ba638154905b7 1209 Pfam PF02965 Vitamin B12 dependent methionine synthase, activation domain 934 1189 3.4E-97 T 13-10-2018 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_26370 1a84cd3c6e83b3a81e1ba638154905b7 1209 SUPERFAMILY SSF52242 742 893 1.31E-41 T 13-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 RAM_26370 1a84cd3c6e83b3a81e1ba638154905b7 1209 Gene3D G3DSA:1.10.1240.10 640 727 1.2E-38 T 13-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_26370 1a84cd3c6e83b3a81e1ba638154905b7 1209 Gene3D G3DSA:1.10.288.10 932 1076 1.1E-110 T 13-10-2018 RAM_26370 1a84cd3c6e83b3a81e1ba638154905b7 1209 Pfam PF02310 B12 binding domain 747 838 7.6E-18 T 13-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 RAM_11685 be3afe0e920c36c7fa30561d24fe51c6 263 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 8 242 1.5E-62 T 13-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 RAM_11685 be3afe0e920c36c7fa30561d24fe51c6 263 Pfam PF00290 Tryptophan synthase alpha chain 8 255 8.5E-70 T 13-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 RAM_11685 be3afe0e920c36c7fa30561d24fe51c6 263 SUPERFAMILY SSF51366 1 254 4.16E-78 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 RAM_11685 be3afe0e920c36c7fa30561d24fe51c6 263 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 14 255 32.095 T 13-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 RAM_11685 be3afe0e920c36c7fa30561d24fe51c6 263 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 48 61 - T 13-10-2018 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 RAM_11685 be3afe0e920c36c7fa30561d24fe51c6 263 Gene3D G3DSA:3.20.20.70 1 262 1.3E-87 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_38195 cdfd7519149b7e6f362be59f409224e9 240 Gene3D G3DSA:2.20.25.570 141 198 4.0E-76 T 13-10-2018 RAM_38195 cdfd7519149b7e6f362be59f409224e9 240 Pfam PF13649 Methyltransferase domain 44 133 1.2E-12 T 13-10-2018 RAM_38195 cdfd7519149b7e6f362be59f409224e9 240 SUPERFAMILY SSF53335 5 233 1.48E-29 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_38195 cdfd7519149b7e6f362be59f409224e9 240 Gene3D G3DSA:3.40.50.150 8 237 4.0E-76 T 13-10-2018 RAM_31275 c34da82d221e75c910d2faf6f7d49158 287 Gene3D G3DSA:1.10.10.60 187 273 3.3E-15 T 13-10-2018 RAM_31275 c34da82d221e75c910d2faf6f7d49158 287 Pfam PF12833 Helix-turn-helix domain 199 271 6.9E-14 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_31275 c34da82d221e75c910d2faf6f7d49158 287 SMART SM00342 188 270 3.7E-7 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_34290 ab4dea625e8358ebf488ef116079cb77 298 Pfam PF00892 EamA-like transporter family 162 295 3.6E-8 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RAM_34290 ab4dea625e8358ebf488ef116079cb77 298 Pfam PF00892 EamA-like transporter family 17 149 7.1E-9 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RAM_34290 ab4dea625e8358ebf488ef116079cb77 298 SUPERFAMILY SSF103481 201 296 1.44E-11 T 13-10-2018 RAM_34290 ab4dea625e8358ebf488ef116079cb77 298 SUPERFAMILY SSF103481 49 151 9.55E-14 T 13-10-2018 RAM_13900 9c7050a2212381a6148ef84054520c1d 175 PRINTS PR01100 Shikimate kinase family signature 6 21 6.9E-13 T 13-10-2018 RAM_13900 9c7050a2212381a6148ef84054520c1d 175 PRINTS PR01100 Shikimate kinase family signature 76 85 6.9E-13 T 13-10-2018 RAM_13900 9c7050a2212381a6148ef84054520c1d 175 PRINTS PR01100 Shikimate kinase family signature 58 66 6.9E-13 T 13-10-2018 RAM_13900 9c7050a2212381a6148ef84054520c1d 175 PRINTS PR01100 Shikimate kinase family signature 30 43 6.9E-13 T 13-10-2018 RAM_13900 9c7050a2212381a6148ef84054520c1d 175 PRINTS PR01100 Shikimate kinase family signature 96 113 6.9E-13 T 13-10-2018 RAM_13900 9c7050a2212381a6148ef84054520c1d 175 Hamap MF_00109 Shikimate kinase [aroK]. 3 168 25.607 T 13-10-2018 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 RAM_13900 9c7050a2212381a6148ef84054520c1d 175 Pfam PF01202 Shikimate kinase 12 167 9.2E-39 T 13-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 RAM_13900 9c7050a2212381a6148ef84054520c1d 175 Gene3D G3DSA:3.40.50.300 4 174 8.0E-50 T 13-10-2018 RAM_13900 9c7050a2212381a6148ef84054520c1d 175 SUPERFAMILY SSF52540 4 165 1.07E-23 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_31165 b1e5bee5b8c5abd61edfb3d78ec7c3b6 217 SUPERFAMILY SSF88946 45 133 9.42E-22 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_31165 b1e5bee5b8c5abd61edfb3d78ec7c3b6 217 Gene3D G3DSA:1.10.1740.10 41 120 1.6E-18 T 13-10-2018 RAM_31165 b1e5bee5b8c5abd61edfb3d78ec7c3b6 217 Pfam PF04542 Sigma-70 region 2 54 122 2.9E-18 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_31165 b1e5bee5b8c5abd61edfb3d78ec7c3b6 217 Pfam PF04545 Sigma-70, region 4 157 206 8.5E-12 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 RAM_31165 b1e5bee5b8c5abd61edfb3d78ec7c3b6 217 Gene3D G3DSA:1.10.10.10 143 214 3.0E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_31165 b1e5bee5b8c5abd61edfb3d78ec7c3b6 217 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 50 207 1.4E-24 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_31165 b1e5bee5b8c5abd61edfb3d78ec7c3b6 217 SUPERFAMILY SSF88659 146 207 3.49E-12 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_41600 aec1822a0984b94b2aac90c55a7cd218 102 Pfam PF10824 Excreted virulence factor EspC, type VII ESX diderm 10 96 6.2E-11 T 13-10-2018 IPR022536 ESX-1 secretion-associated protein EspC GO:0009306 RAM_10745 41fecc3918a62196138469765b3b18cf 143 Pfam PF11253 Protein of unknown function (DUF3052) 13 137 1.0E-54 T 13-10-2018 IPR021412 Protein of unknown function DUF3052 RAM_17585 c569ffc7a8b82313ea3b3a5f7d4b36bf 373 SUPERFAMILY SSF53187 2 351 3.01E-41 T 13-10-2018 RAM_17585 c569ffc7a8b82313ea3b3a5f7d4b36bf 373 PIRSF PIRSF037238 1 353 1.8E-124 T 13-10-2018 IPR017150 Peptidase M20, glutamate carboxypeptidase RAM_17585 c569ffc7a8b82313ea3b3a5f7d4b36bf 373 Gene3D G3DSA:3.30.70.360 163 270 2.8E-97 T 13-10-2018 RAM_17585 c569ffc7a8b82313ea3b3a5f7d4b36bf 373 Gene3D G3DSA:3.40.630.10 4 341 2.8E-97 T 13-10-2018 RAM_17585 c569ffc7a8b82313ea3b3a5f7d4b36bf 373 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 62 71 - T 13-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 RAM_17585 c569ffc7a8b82313ea3b3a5f7d4b36bf 373 Pfam PF07687 Peptidase dimerisation domain 161 256 6.5E-15 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain RAM_17585 c569ffc7a8b82313ea3b3a5f7d4b36bf 373 SUPERFAMILY SSF55031 163 255 5.89E-19 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain RAM_17585 c569ffc7a8b82313ea3b3a5f7d4b36bf 373 Pfam PF01546 Peptidase family M20/M25/M40 63 349 6.5E-22 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 RAM_21970 b62d5ea28a49d58f29e262ad08be4a9b 411 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 147 162 1.9E-15 T 13-10-2018 RAM_21970 b62d5ea28a49d58f29e262ad08be4a9b 411 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 281 296 1.9E-15 T 13-10-2018 RAM_21970 b62d5ea28a49d58f29e262ad08be4a9b 411 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 296 312 1.9E-15 T 13-10-2018 RAM_21970 b62d5ea28a49d58f29e262ad08be4a9b 411 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 4 26 1.9E-15 T 13-10-2018 RAM_21970 b62d5ea28a49d58f29e262ad08be4a9b 411 Gene3D G3DSA:3.30.9.50 40 271 4.9E-69 T 13-10-2018 RAM_21970 b62d5ea28a49d58f29e262ad08be4a9b 411 SUPERFAMILY SSF51905 4 372 2.66E-53 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_21970 b62d5ea28a49d58f29e262ad08be4a9b 411 Pfam PF01494 FAD binding domain 5 334 1.7E-17 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_21970 b62d5ea28a49d58f29e262ad08be4a9b 411 Gene3D G3DSA:3.50.50.60 7 340 4.9E-69 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_37360 376bcaaefcd5cfa814a64b9fe7032e8c 211 Gene3D G3DSA:1.20.1290.10 15 175 6.8E-25 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_37360 376bcaaefcd5cfa814a64b9fe7032e8c 211 Pfam PF02627 Carboxymuconolactone decarboxylase family 42 114 1.6E-7 T 13-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RAM_37360 376bcaaefcd5cfa814a64b9fe7032e8c 211 SUPERFAMILY SSF69118 2 174 5.63E-26 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_35305 76e034e88a5d060c491a53462482b802 166 Pfam PF05988 Bacterial protein of unknown function (DUF899) 12 140 1.5E-19 T 13-10-2018 IPR010296 Protein of unknown function DUF899, thioredoxin-like RAM_05680 8618e68a5d353a82dbccfa6fdb60681e 384 SUPERFAMILY SSF55486 218 350 1.97E-11 T 13-10-2018 RAM_05680 8618e68a5d353a82dbccfa6fdb60681e 384 Pfam PF11350 Protein of unknown function (DUF3152) 169 381 2.1E-71 T 13-10-2018 IPR022603 Domain of unknown function DUF3152 RAM_34580 3f576909c1e5d19ce80b326a27c0ee01 201 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 113 126 - T 13-10-2018 IPR033135 ClpP, histidine active site RAM_34580 3f576909c1e5d19ce80b326a27c0ee01 201 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 4 194 39.06 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RAM_34580 3f576909c1e5d19ce80b326a27c0ee01 201 SUPERFAMILY SSF52096 20 193 8.19E-65 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_34580 3f576909c1e5d19ce80b326a27c0ee01 201 Pfam PF00574 Clp protease 19 192 2.7E-74 T 13-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA RAM_34580 3f576909c1e5d19ce80b326a27c0ee01 201 PRINTS PR00127 Clp protease catalytic subunit P signature 169 188 9.1E-44 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RAM_34580 3f576909c1e5d19ce80b326a27c0ee01 201 PRINTS PR00127 Clp protease catalytic subunit P signature 60 80 9.1E-44 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RAM_34580 3f576909c1e5d19ce80b326a27c0ee01 201 PRINTS PR00127 Clp protease catalytic subunit P signature 91 108 9.1E-44 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RAM_34580 3f576909c1e5d19ce80b326a27c0ee01 201 PRINTS PR00127 Clp protease catalytic subunit P signature 112 131 9.1E-44 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RAM_34580 3f576909c1e5d19ce80b326a27c0ee01 201 PRINTS PR00127 Clp protease catalytic subunit P signature 20 35 9.1E-44 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RAM_34580 3f576909c1e5d19ce80b326a27c0ee01 201 Gene3D G3DSA:3.90.226.10 1 195 1.5E-71 T 13-10-2018 RAM_01315 2dadb6c2cd914c82ce182ac5b872b901 236 SUPERFAMILY SSF49899 47 214 4.04E-27 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily RAM_01315 2dadb6c2cd914c82ce182ac5b872b901 236 Pfam PF01828 Peptidase A4 family 48 206 2.7E-26 T 13-10-2018 IPR000250 Peptidase G1 GO:0004190|GO:0006508 RAM_01315 2dadb6c2cd914c82ce182ac5b872b901 236 Gene3D G3DSA:2.60.120.700 46 225 1.7E-28 T 13-10-2018 IPR038656 Peptidase G1 superfamily RAM_24985 184c73e56184fa8ffa9f528b7bf1cd78 276 Gene3D G3DSA:3.40.50.150 69 263 2.6E-59 T 13-10-2018 RAM_24985 184c73e56184fa8ffa9f528b7bf1cd78 276 Gene3D G3DSA:3.10.330.20 1 67 8.1E-26 T 13-10-2018 RAM_24985 184c73e56184fa8ffa9f528b7bf1cd78 276 Pfam PF14801 tRNA methyltransferase complex GCD14 subunit N-term 4 54 9.3E-29 T 13-10-2018 RAM_24985 184c73e56184fa8ffa9f528b7bf1cd78 276 PIRSF PIRSF017269 1 267 2.0E-85 T 13-10-2018 IPR014816 tRNA (1-methyladenosine) methyltransferase catalytic subunit Gcd14 GO:0016429|GO:0030488|GO:0031515 MetaCyc: PWY-6829 RAM_24985 184c73e56184fa8ffa9f528b7bf1cd78 276 Pfam PF08704 tRNA methyltransferase complex GCD14 subunit 73 234 2.2E-22 T 13-10-2018 IPR014816 tRNA (1-methyladenosine) methyltransferase catalytic subunit Gcd14 GO:0016429|GO:0030488|GO:0031515 MetaCyc: PWY-6829 RAM_24985 184c73e56184fa8ffa9f528b7bf1cd78 276 SUPERFAMILY SSF53335 6 257 1.86E-71 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_42495 9879ff9eef9566c90518d4eac54025ee 113 Pfam PF12840 Helix-turn-helix domain 11 62 5.7E-11 T 13-10-2018 RAM_42495 9879ff9eef9566c90518d4eac54025ee 113 SUPERFAMILY SSF46785 6 92 6.69E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_42495 9879ff9eef9566c90518d4eac54025ee 113 Gene3D G3DSA:1.10.10.10 5 95 1.9E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_42495 9879ff9eef9566c90518d4eac54025ee 113 SMART SM00418 11 87 2.1E-7 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_03245 20e820019584cf06badaf86d3572f2e5 166 SUPERFAMILY SSF50475 4 136 1.05E-23 T 13-10-2018 RAM_03245 20e820019584cf06badaf86d3572f2e5 166 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 8 92 8.1E-12 T 13-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RAM_03245 20e820019584cf06badaf86d3572f2e5 166 Gene3D G3DSA:2.30.110.10 2 137 1.6E-24 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_31250 ca4972cdb47123afc1462f96cb0ad753 135 SUPERFAMILY SSF54427 4 130 1.33E-32 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_31250 ca4972cdb47123afc1462f96cb0ad753 135 Pfam PF12680 SnoaL-like domain 13 116 1.2E-16 T 13-10-2018 IPR037401 SnoaL-like domain RAM_31250 ca4972cdb47123afc1462f96cb0ad753 135 Gene3D G3DSA:3.10.450.50 1 130 3.4E-36 T 13-10-2018 RAM_46545 b997757f271f73f557c6e9c3a7d8b47e 340 Gene3D G3DSA:3.90.1150.10 256 339 2.2E-14 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_46545 b997757f271f73f557c6e9c3a7d8b47e 340 SUPERFAMILY SSF53383 8 337 2.04E-94 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_46545 b997757f271f73f557c6e9c3a7d8b47e 340 PIRSF PIRSF017617 1 340 1.9E-105 T 13-10-2018 IPR023603 Threonine aldolase RAM_46545 b997757f271f73f557c6e9c3a7d8b47e 340 Gene3D G3DSA:3.40.640.10 5 255 2.1E-79 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_46545 b997757f271f73f557c6e9c3a7d8b47e 340 Pfam PF01212 Beta-eliminating lyase 9 292 6.8E-76 T 13-10-2018 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 Reactome: R-HSA-6783984 RAM_03685 d6bc149f8ee8543d67a580236f5bfc24 81 SUPERFAMILY SSF140453 2 71 8.24E-15 T 13-10-2018 IPR036689 ESAT-6-like superfamily RAM_03685 d6bc149f8ee8543d67a580236f5bfc24 81 TIGRFAM TIGR03930 WXG100_ESAT6: WXG100 family type VII secretion target 3 67 2.0E-14 T 13-10-2018 IPR010310 Type VII secretion system ESAT-6-like RAM_03685 d6bc149f8ee8543d67a580236f5bfc24 81 Gene3D G3DSA:1.10.287.1060 1 78 6.7E-19 T 13-10-2018 RAM_03685 d6bc149f8ee8543d67a580236f5bfc24 81 Pfam PF06013 Proteins of 100 residues with WXG 3 64 2.5E-13 T 13-10-2018 IPR010310 Type VII secretion system ESAT-6-like RAM_27140 8c04c9878f2c26170db2f71651b8e495 204 Pfam PF00881 Nitroreductase family 23 182 1.1E-16 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 RAM_27140 8c04c9878f2c26170db2f71651b8e495 204 SUPERFAMILY SSF55469 21 202 1.44E-41 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RAM_27140 8c04c9878f2c26170db2f71651b8e495 204 Gene3D G3DSA:3.40.109.10 21 203 8.3E-29 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RAM_31060 22c4388eb902d3b52f0980f7693e5386 201 SUPERFAMILY SSF46785 3 67 3.9E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_31060 22c4388eb902d3b52f0980f7693e5386 201 SMART SM00895 73 196 1.6E-9 T 13-10-2018 IPR011711 GntR, C-terminal RAM_31060 22c4388eb902d3b52f0980f7693e5386 201 Pfam PF07729 FCD domain 76 191 7.2E-16 T 13-10-2018 IPR011711 GntR, C-terminal RAM_31060 22c4388eb902d3b52f0980f7693e5386 201 Gene3D G3DSA:1.10.10.10 1 64 5.7E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_31060 22c4388eb902d3b52f0980f7693e5386 201 Gene3D G3DSA:1.20.120.530 69 198 1.7E-17 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_31060 22c4388eb902d3b52f0980f7693e5386 201 Pfam PF00392 Bacterial regulatory proteins, gntR family 2 63 1.4E-17 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_31060 22c4388eb902d3b52f0980f7693e5386 201 SUPERFAMILY SSF48008 70 195 2.12E-15 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_31060 22c4388eb902d3b52f0980f7693e5386 201 SMART SM00345 5 63 1.7E-15 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_42520 c7ab146f7a079cbbf86391b2d93246e3 403 Gene3D G3DSA:1.10.630.10 1 403 3.6E-116 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_42520 c7ab146f7a079cbbf86391b2d93246e3 403 PRINTS PR00385 P450 superfamily signature 352 363 3.5E-12 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_42520 c7ab146f7a079cbbf86391b2d93246e3 403 PRINTS PR00385 P450 superfamily signature 269 280 3.5E-12 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_42520 c7ab146f7a079cbbf86391b2d93246e3 403 PRINTS PR00385 P450 superfamily signature 343 352 3.5E-12 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_42520 c7ab146f7a079cbbf86391b2d93246e3 403 PRINTS PR00385 P450 superfamily signature 217 234 3.5E-12 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_42520 c7ab146f7a079cbbf86391b2d93246e3 403 PRINTS PR00463 E-class P450 group I signature 206 223 1.3E-26 T 13-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_42520 c7ab146f7a079cbbf86391b2d93246e3 403 PRINTS PR00463 E-class P450 group I signature 25 46 1.3E-26 T 13-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_42520 c7ab146f7a079cbbf86391b2d93246e3 403 PRINTS PR00463 E-class P450 group I signature 226 252 1.3E-26 T 13-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_42520 c7ab146f7a079cbbf86391b2d93246e3 403 PRINTS PR00463 E-class P450 group I signature 1 20 1.3E-26 T 13-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_42520 c7ab146f7a079cbbf86391b2d93246e3 403 PRINTS PR00463 E-class P450 group I signature 307 331 1.3E-26 T 13-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_42520 c7ab146f7a079cbbf86391b2d93246e3 403 PRINTS PR00463 E-class P450 group I signature 342 352 1.3E-26 T 13-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_42520 c7ab146f7a079cbbf86391b2d93246e3 403 PRINTS PR00463 E-class P450 group I signature 352 375 1.3E-26 T 13-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_42520 c7ab146f7a079cbbf86391b2d93246e3 403 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 345 354 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RAM_42520 c7ab146f7a079cbbf86391b2d93246e3 403 SUPERFAMILY SSF48264 4 403 3.54E-99 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_42520 c7ab146f7a079cbbf86391b2d93246e3 403 Pfam PF00067 Cytochrome P450 4 369 6.3E-78 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_15755 a7b43ba4884a5e62c0fd220e1b55e11a 278 Gene3D G3DSA:3.40.50.2300 106 267 8.8E-65 T 13-10-2018 RAM_15755 a7b43ba4884a5e62c0fd220e1b55e11a 278 SUPERFAMILY SSF53822 7 277 3.44E-55 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_15755 a7b43ba4884a5e62c0fd220e1b55e11a 278 Pfam PF13377 Periplasmic binding protein-like domain 115 273 9.5E-32 T 13-10-2018 RAM_15755 a7b43ba4884a5e62c0fd220e1b55e11a 278 Gene3D G3DSA:3.40.50.2300 25 264 8.8E-65 T 13-10-2018 RAM_19100 e80f6f65cd766e198fc9ac0da0494e21 354 Gene3D G3DSA:1.10.540.10 2 104 1.7E-14 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_19100 e80f6f65cd766e198fc9ac0da0494e21 354 Gene3D G3DSA:1.20.140.10 192 353 2.2E-24 T 13-10-2018 RAM_19100 e80f6f65cd766e198fc9ac0da0494e21 354 SUPERFAMILY SSF56645 5 191 2.82E-20 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_19100 e80f6f65cd766e198fc9ac0da0494e21 354 Gene3D G3DSA:2.40.110.10 106 191 9.3E-22 T 13-10-2018 RAM_19100 e80f6f65cd766e198fc9ac0da0494e21 354 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 212 337 4.8E-18 T 13-10-2018 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain RAM_19100 e80f6f65cd766e198fc9ac0da0494e21 354 SUPERFAMILY SSF47203 212 337 1.71E-9 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_19100 e80f6f65cd766e198fc9ac0da0494e21 354 PIRSF PIRSF016578 2 354 2.7E-67 T 13-10-2018 RAM_41660 a736ce048110a3bc9801a045c9fba29a 236 SUPERFAMILY SSF81995 6 64 6.02E-6 T 13-10-2018 RAM_20470 b0040b6016fe421fded120c1f66d99cb 266 SUPERFAMILY SSF53474 4 263 5.45E-28 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_20470 b0040b6016fe421fded120c1f66d99cb 266 Pfam PF12697 Alpha/beta hydrolase family 8 256 6.8E-16 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_20470 b0040b6016fe421fded120c1f66d99cb 266 Gene3D G3DSA:3.40.50.1820 1 264 1.1E-27 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_46020 32d2e2537b6eaf9bda691c6246782781 297 Gene3D G3DSA:1.10.3720.10 21 289 2.4E-49 T 13-10-2018 IPR035906 MetI-like superfamily RAM_46020 32d2e2537b6eaf9bda691c6246782781 297 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 93 284 1.2E-12 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_46020 32d2e2537b6eaf9bda691c6246782781 297 SUPERFAMILY SSF161098 24 285 1.12E-51 T 13-10-2018 IPR035906 MetI-like superfamily RAM_23245 faef57aa1a94e7a7abe9611276d23b1b 136 ProDom PD026347 LSR2-LIKE LSR2 ANTIGEN IMMUNE PRECURSOR RESPONSE SIGNAL PLASMID LYSYL GP61 1 112 1.0E-23 T 13-10-2018 IPR024412 Lsr2 RAM_23245 faef57aa1a94e7a7abe9611276d23b1b 136 Pfam PF11774 Lsr2 1 113 4.6E-39 T 13-10-2018 IPR024412 Lsr2 RAM_23245 faef57aa1a94e7a7abe9611276d23b1b 136 Gene3D G3DSA:3.30.60.230 1 60 1.6E-27 T 13-10-2018 RAM_23245 faef57aa1a94e7a7abe9611276d23b1b 136 Gene3D G3DSA:1.20.890.50 81 120 3.7E-11 T 13-10-2018 RAM_33360 2a93f7da0ed67f179b33b0f11345bfe6 415 Pfam PF07730 Histidine kinase 203 267 2.9E-14 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_33360 2a93f7da0ed67f179b33b0f11345bfe6 415 Gene3D G3DSA:3.30.565.10 280 401 4.3E-29 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_33360 2a93f7da0ed67f179b33b0f11345bfe6 415 SUPERFAMILY SSF55874 296 402 3.46E-15 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_03035 9e8ad528da8b905e4aa5fdaca0521aa1 146 Gene3D G3DSA:1.20.5.1030 86 144 1.1E-18 T 13-10-2018 IPR038379 SecE superfamily RAM_03035 9e8ad528da8b905e4aa5fdaca0521aa1 146 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 91 146 1.7E-19 T 13-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 RAM_03035 9e8ad528da8b905e4aa5fdaca0521aa1 146 ProSitePatterns PS01067 Protein secE/sec61-gamma signature. 93 121 - T 13-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 RAM_03035 9e8ad528da8b905e4aa5fdaca0521aa1 146 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 92 143 8.3E-19 T 13-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 RAM_03035 9e8ad528da8b905e4aa5fdaca0521aa1 146 Hamap MF_00422 Protein translocase subunit SecE [secE]. 88 145 12.56 T 13-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 RAM_04710 d5b3583b795be6af8b5528d432064c1a 267 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 15 121 1.3E-5 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RAM_04710 d5b3583b795be6af8b5528d432064c1a 267 SUPERFAMILY SSF54593 13 128 2.42E-21 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_04710 d5b3583b795be6af8b5528d432064c1a 267 Gene3D G3DSA:3.10.180.10 136 258 1.8E-30 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_04710 d5b3583b795be6af8b5528d432064c1a 267 Gene3D G3DSA:3.10.180.10 9 128 4.9E-36 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_04710 d5b3583b795be6af8b5528d432064c1a 267 SUPERFAMILY SSF54593 143 253 2.2E-17 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_28225 78a7a3a22b5871fa2b54e8f661e2a090 160 Gene3D G3DSA:3.10.450.50 29 159 3.0E-27 T 13-10-2018 RAM_28225 78a7a3a22b5871fa2b54e8f661e2a090 160 Pfam PF13474 SnoaL-like domain 45 157 3.3E-8 T 13-10-2018 IPR037401 SnoaL-like domain RAM_28225 78a7a3a22b5871fa2b54e8f661e2a090 160 SUPERFAMILY SSF54427 33 158 1.0E-21 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_28225 78a7a3a22b5871fa2b54e8f661e2a090 160 TIGRFAM TIGR02246 TIGR02246: conserved hypothetical protein 33 140 1.3E-18 T 13-10-2018 IPR011944 Steroid delta5-4-isomerase KEGG: 00140+5.3.3.1|KEGG: 00984+5.3.3.1|MetaCyc: PWY-2582|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-699|MetaCyc: PWY-7299 RAM_33545 cbfb175abe6a241361357154b53b178f 506 SUPERFAMILY SSF81648 5 114 3.4E-11 T 13-10-2018 IPR036150 Cytochrome b/b6, C-terminal domain superfamily GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 RAM_33545 cbfb175abe6a241361357154b53b178f 506 Gene3D G3DSA:1.20.810.10 2 131 7.3E-6 T 13-10-2018 IPR027387 Cytochrome b/b6-like domain superfamily Reactome: R-HSA-611105 RAM_04295 ad4083b2abd8801c2db4ae3fede98e08 166 Gene3D G3DSA:3.40.50.300 1 165 1.9E-28 T 13-10-2018 RAM_04295 ad4083b2abd8801c2db4ae3fede98e08 166 SUPERFAMILY SSF52540 2 122 8.11E-14 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_04295 ad4083b2abd8801c2db4ae3fede98e08 166 Pfam PF13671 AAA domain 3 128 8.6E-13 T 13-10-2018 RAM_22205 9131e0d91bfe36b555c6e14ff308a90f 282 Gene3D G3DSA:3.40.50.720 103 241 2.1E-76 T 13-10-2018 RAM_22205 9131e0d91bfe36b555c6e14ff308a90f 282 Gene3D G3DSA:3.40.50.10860 8 263 2.1E-76 T 13-10-2018 RAM_22205 9131e0d91bfe36b555c6e14ff308a90f 282 SUPERFAMILY SSF53223 3 104 2.01E-25 T 13-10-2018 RAM_22205 9131e0d91bfe36b555c6e14ff308a90f 282 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 3 274 27.599 T 13-10-2018 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 RAM_22205 9131e0d91bfe36b555c6e14ff308a90f 282 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 8 92 8.2E-21 T 13-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 RAM_22205 9131e0d91bfe36b555c6e14ff308a90f 282 SUPERFAMILY SSF51735 105 270 2.63E-36 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_47570 d5405375b22db39ca4bbf395ec073659 225 Gene3D G3DSA:3.40.50.720 5 224 4.3E-58 T 13-10-2018 RAM_47570 d5405375b22db39ca4bbf395ec073659 225 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 5 174 0.0069 T 13-10-2018 RAM_47570 d5405375b22db39ca4bbf395ec073659 225 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 123 131 6.7E-6 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_47570 d5405375b22db39ca4bbf395ec073659 225 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 162 6.7E-6 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_47570 d5405375b22db39ca4bbf395ec073659 225 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 71 82 6.7E-6 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_47570 d5405375b22db39ca4bbf395ec073659 225 Pfam PF00106 short chain dehydrogenase 7 185 1.2E-42 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_47570 d5405375b22db39ca4bbf395ec073659 225 SUPERFAMILY SSF51735 7 213 2.76E-51 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_47570 d5405375b22db39ca4bbf395ec073659 225 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 130 158 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_47570 d5405375b22db39ca4bbf395ec073659 225 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 1.0E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_47570 d5405375b22db39ca4bbf395ec073659 225 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 143 162 1.0E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_47570 d5405375b22db39ca4bbf395ec073659 225 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 117 133 1.0E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_47570 d5405375b22db39ca4bbf395ec073659 225 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 179 1.0E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_47570 d5405375b22db39ca4bbf395ec073659 225 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 71 82 1.0E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_38160 90b0fc2eb19b55f61feb84c1d70403ee 335 SUPERFAMILY SSF51445 2 283 3.27E-21 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_38160 90b0fc2eb19b55f61feb84c1d70403ee 335 Gene3D G3DSA:3.20.20.80 8 300 2.0E-28 T 13-10-2018 RAM_21100 5d3c3fd0e69a5c2e5413326042abee43 144 Pfam PF13581 Histidine kinase-like ATPase domain 21 128 1.7E-9 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_21100 5d3c3fd0e69a5c2e5413326042abee43 144 SUPERFAMILY SSF55874 40 130 1.57E-11 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_21100 5d3c3fd0e69a5c2e5413326042abee43 144 Gene3D G3DSA:3.30.565.10 18 140 1.0E-23 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_47005 ba9f8d8513dfec45df3c96656554698e 235 SUPERFAMILY SSF58014 70 152 1.06E-16 T 13-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 RAM_47005 ba9f8d8513dfec45df3c96656554698e 235 ProSitePatterns PS01071 grpE protein signature. 163 206 - T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 RAM_47005 ba9f8d8513dfec45df3c96656554698e 235 Gene3D G3DSA:3.90.20.20 51 150 9.5E-17 T 13-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 RAM_47005 ba9f8d8513dfec45df3c96656554698e 235 SUPERFAMILY SSF51064 154 209 6.15E-16 T 13-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 RAM_47005 ba9f8d8513dfec45df3c96656554698e 235 Gene3D G3DSA:2.30.22.10 152 207 2.4E-17 T 13-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 RAM_47005 ba9f8d8513dfec45df3c96656554698e 235 Hamap MF_01151 Protein GrpE [grpE]. 6 208 16.877 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 RAM_47005 ba9f8d8513dfec45df3c96656554698e 235 PRINTS PR00773 GrpE protein signature 187 206 2.5E-25 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 RAM_47005 ba9f8d8513dfec45df3c96656554698e 235 PRINTS PR00773 GrpE protein signature 85 101 2.5E-25 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 RAM_47005 ba9f8d8513dfec45df3c96656554698e 235 PRINTS PR00773 GrpE protein signature 113 128 2.5E-25 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 RAM_47005 ba9f8d8513dfec45df3c96656554698e 235 PRINTS PR00773 GrpE protein signature 160 175 2.5E-25 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 RAM_47005 ba9f8d8513dfec45df3c96656554698e 235 Pfam PF01025 GrpE 70 207 1.1E-32 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 RAM_28905 f999ab1d638626e29d5b1fd8b8ec154c 314 SUPERFAMILY SSF53850 22 223 3.53E-10 T 13-10-2018 RAM_28905 f999ab1d638626e29d5b1fd8b8ec154c 314 Gene3D G3DSA:3.40.190.10 22 155 4.9E-8 T 13-10-2018 RAM_02250 834da3ce00e104c56d46562aad7bd083 306 Gene3D G3DSA:3.40.190.10 43 306 1.5E-68 T 13-10-2018 RAM_02250 834da3ce00e104c56d46562aad7bd083 306 SUPERFAMILY SSF53850 41 304 4.49E-45 T 13-10-2018 RAM_02250 834da3ce00e104c56d46562aad7bd083 306 Gene3D G3DSA:3.40.190.120 141 244 1.5E-68 T 13-10-2018 RAM_02250 834da3ce00e104c56d46562aad7bd083 306 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 41 302 6.0E-45 T 13-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 RAM_41785 de34309132c91de11b3d3e93442e6b0d 248 Gene3D G3DSA:3.40.50.1820 4 248 2.2E-69 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_41785 de34309132c91de11b3d3e93442e6b0d 248 SMART SM00824 Thioesterase 25 246 0.001 T 13-10-2018 IPR020802 Polyketide synthase, thioesterase domain GO:0009058|GO:0016788 RAM_41785 de34309132c91de11b3d3e93442e6b0d 248 SUPERFAMILY SSF53474 8 246 8.39E-52 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_41785 de34309132c91de11b3d3e93442e6b0d 248 Pfam PF00975 Thioesterase domain 23 243 1.9E-49 T 13-10-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 RAM_42025 2c3cc473a6a6732bbc67e3382a36960a 287 Gene3D G3DSA:3.40.50.1580 2 236 9.2E-51 T 13-10-2018 RAM_42025 2c3cc473a6a6732bbc67e3382a36960a 287 Pfam PF01048 Phosphorylase superfamily 2 233 1.8E-30 T 13-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 RAM_42025 2c3cc473a6a6732bbc67e3382a36960a 287 SUPERFAMILY SSF53167 3 230 3.4E-38 T 13-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 RAM_40430 6b2c431aba8c21cebcf5c9888021fafd 275 Pfam PF12706 Beta-lactamase superfamily domain 45 229 1.7E-21 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_40430 6b2c431aba8c21cebcf5c9888021fafd 275 Gene3D G3DSA:3.60.15.10 1 275 1.7E-58 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_40430 6b2c431aba8c21cebcf5c9888021fafd 275 Hamap MF_00653 Coenzyme PQQ synthesis protein B [pqqB]. 1 275 72.306 T 13-10-2018 IPR011842 Coenzyme PQQ biosynthesis protein B RAM_40430 6b2c431aba8c21cebcf5c9888021fafd 275 SUPERFAMILY SSF56281 2 273 5.01E-32 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_17405 97fa435f02d731737ad97789442e074f 296 Gene3D G3DSA:3.30.420.40 7 289 8.0E-64 T 13-10-2018 RAM_17405 97fa435f02d731737ad97789442e074f 296 Pfam PF00480 ROK family 7 294 5.3E-41 T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 RAM_17405 97fa435f02d731737ad97789442e074f 296 SUPERFAMILY SSF53067 6 294 6.26E-47 T 13-10-2018 RAM_17405 97fa435f02d731737ad97789442e074f 296 Gene3D G3DSA:3.30.420.40 128 277 8.0E-64 T 13-10-2018 RAM_06685 9a2cabc0103b64e9804e84f0c599a75f 757 Gene3D G3DSA:1.20.1580.10 101 341 4.9E-156 T 13-10-2018 RAM_06685 9a2cabc0103b64e9804e84f0c599a75f 757 Pfam PF00005 ABC transporter 472 674 2.1E-10 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_06685 9a2cabc0103b64e9804e84f0c599a75f 757 SUPERFAMILY SSF52540 464 727 9.5E-40 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_06685 9a2cabc0103b64e9804e84f0c599a75f 757 SMART SM00382 33 418 5.2 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_06685 9a2cabc0103b64e9804e84f0c599a75f 757 SMART SM00382 481 720 0.28 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_06685 9a2cabc0103b64e9804e84f0c599a75f 757 Gene3D G3DSA:1.20.1580.10 548 586 1.4E-103 T 13-10-2018 RAM_06685 9a2cabc0103b64e9804e84f0c599a75f 757 SUPERFAMILY SSF52540 16 423 1.19E-31 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_06685 9a2cabc0103b64e9804e84f0c599a75f 757 Gene3D G3DSA:1.10.8.280 155 263 4.9E-156 T 13-10-2018 RAM_06685 9a2cabc0103b64e9804e84f0c599a75f 757 Gene3D G3DSA:3.40.50.300 466 750 1.4E-103 T 13-10-2018 RAM_06685 9a2cabc0103b64e9804e84f0c599a75f 757 Gene3D G3DSA:3.40.50.300 15 442 4.9E-156 T 13-10-2018 RAM_13330 3eb78f910a165ec444930c054944f9d0 481 Pfam PF00474 Sodium:solute symporter family 32 412 8.4E-38 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 RAM_13330 3eb78f910a165ec444930c054944f9d0 481 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 394 414 - T 13-10-2018 IPR018212 Sodium/solute symporter, conserved site RAM_13330 3eb78f910a165ec444930c054944f9d0 481 Gene3D G3DSA:1.20.1730.10 22 466 8.4E-73 T 13-10-2018 IPR038377 Sodium/glucose symporter superfamily RAM_09480 26d5feec4fdfbd49707abd35e447ab3a 370 Pfam PF05762 VWA domain containing CoxE-like protein 143 360 7.7E-59 T 13-10-2018 IPR008912 Uncharacterised protein family CoxE-like RAM_09480 26d5feec4fdfbd49707abd35e447ab3a 370 PIRSF PIRSF010256 4 370 5.6E-94 T 13-10-2018 IPR011195 Uncharacterised conserved protein UCP010256 RAM_09480 26d5feec4fdfbd49707abd35e447ab3a 370 Gene3D G3DSA:3.40.50.410 196 325 2.5E-6 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RAM_09480 26d5feec4fdfbd49707abd35e447ab3a 370 SUPERFAMILY SSF53300 195 327 4.96E-14 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RAM_09480 26d5feec4fdfbd49707abd35e447ab3a 370 SMART SM00327 195 361 0.0079 T 13-10-2018 IPR002035 von Willebrand factor, type A RAM_05405 ed9cb65f02f9e8dbc14170e02356c069 321 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 70 1.0E-15 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_05405 ed9cb65f02f9e8dbc14170e02356c069 321 Gene3D G3DSA:3.40.190.10 172 271 8.3E-54 T 13-10-2018 RAM_05405 ed9cb65f02f9e8dbc14170e02356c069 321 SUPERFAMILY SSF46785 13 118 9.19E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_05405 ed9cb65f02f9e8dbc14170e02356c069 321 Gene3D G3DSA:1.10.10.10 11 96 1.0E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_05405 ed9cb65f02f9e8dbc14170e02356c069 321 Gene3D G3DSA:3.40.190.10 99 285 8.3E-54 T 13-10-2018 RAM_05405 ed9cb65f02f9e8dbc14170e02356c069 321 SUPERFAMILY SSF53850 96 298 4.83E-42 T 13-10-2018 RAM_05405 ed9cb65f02f9e8dbc14170e02356c069 321 Pfam PF03466 LysR substrate binding domain 97 296 7.1E-47 T 13-10-2018 IPR005119 LysR, substrate-binding RAM_43895 3ffc3bce63573f2921e5586b74ed8447 71 Pfam PF04024 PspC domain 11 69 9.1E-17 T 13-10-2018 IPR007168 Phage shock protein, PspC, N-terminal RAM_35610 dd3f1308052fe22e895dff2b5f815716 237 Gene3D G3DSA:3.40.50.2300 1 118 6.6E-34 T 13-10-2018 RAM_35610 dd3f1308052fe22e895dff2b5f815716 237 SUPERFAMILY SSF46894 126 228 2.15E-24 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_35610 dd3f1308052fe22e895dff2b5f815716 237 Pfam PF00486 Transcriptional regulatory protein, C terminal 147 227 2.8E-22 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_35610 dd3f1308052fe22e895dff2b5f815716 237 SMART SM00862 147 227 1.5E-21 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_35610 dd3f1308052fe22e895dff2b5f815716 237 Gene3D G3DSA:1.10.10.10 119 232 2.5E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_35610 dd3f1308052fe22e895dff2b5f815716 237 SUPERFAMILY SSF52172 1 122 1.57E-37 T 13-10-2018 IPR011006 CheY-like superfamily RAM_35610 dd3f1308052fe22e895dff2b5f815716 237 SMART SM00448 2 113 9.7E-36 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_35610 dd3f1308052fe22e895dff2b5f815716 237 Pfam PF00072 Response regulator receiver domain 5 113 4.5E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_16750 2065eaa2725930b65ad87d8118629a41 787 SUPERFAMILY SSF51126 17 637 2.62E-26 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor RAM_16750 2065eaa2725930b65ad87d8118629a41 787 Pfam PF13229 Right handed beta helix region 359 582 2.7E-10 T 13-10-2018 IPR039448 Right handed beta helix domain RAM_16750 2065eaa2725930b65ad87d8118629a41 787 Gene3D G3DSA:2.80.10.50 659 786 1.0E-39 T 13-10-2018 RAM_16750 2065eaa2725930b65ad87d8118629a41 787 SUPERFAMILY SSF50370 659 786 1.05E-38 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_16750 2065eaa2725930b65ad87d8118629a41 787 Pfam PF00652 Ricin-type beta-trefoil lectin domain 659 784 4.4E-29 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_16750 2065eaa2725930b65ad87d8118629a41 787 Gene3D G3DSA:2.160.20.10 342 656 1.2E-12 T 13-10-2018 IPR012334 Pectin lyase fold RAM_16750 2065eaa2725930b65ad87d8118629a41 787 SMART SM00458 658 787 3.2E-31 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_16750 2065eaa2725930b65ad87d8118629a41 787 SMART SM00710 465 486 160.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_16750 2065eaa2725930b65ad87d8118629a41 787 SMART SM00710 400 422 4.2 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_16750 2065eaa2725930b65ad87d8118629a41 787 SMART SM00710 547 570 3300.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_16750 2065eaa2725930b65ad87d8118629a41 787 SMART SM00710 149 170 760.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_16750 2065eaa2725930b65ad87d8118629a41 787 SMART SM00710 365 387 960.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_16750 2065eaa2725930b65ad87d8118629a41 787 SMART SM00710 572 611 3300.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_16750 2065eaa2725930b65ad87d8118629a41 787 SMART SM00710 437 464 2200.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_16750 2065eaa2725930b65ad87d8118629a41 787 Gene3D G3DSA:2.160.20.10 15 270 1.9E-20 T 13-10-2018 IPR012334 Pectin lyase fold RAM_39500 db0006799ecbceb78a0f83b9b00f3308 557 TIGRFAM TIGR00350 lytR_cpsA_psr: cell envelope-related function transcriptional attenuator common domain 157 328 5.9E-33 T 13-10-2018 IPR004474 Cell envelope-related transcriptional attenuator domain RAM_39500 db0006799ecbceb78a0f83b9b00f3308 557 Pfam PF03816 Cell envelope-related transcriptional attenuator domain 157 328 4.7E-41 T 13-10-2018 IPR004474 Cell envelope-related transcriptional attenuator domain RAM_39500 db0006799ecbceb78a0f83b9b00f3308 557 Gene3D G3DSA:3.30.70.2390 428 509 5.1E-7 T 13-10-2018 RAM_39500 db0006799ecbceb78a0f83b9b00f3308 557 Pfam PF13399 LytR cell envelope-related transcriptional attenuator 430 514 4.2E-17 T 13-10-2018 IPR027381 Putative LytR/CpsA/Psr regulator, C-terminal domain RAM_39500 db0006799ecbceb78a0f83b9b00f3308 557 Gene3D G3DSA:1.10.260.150 114 407 6.9E-69 T 13-10-2018 RAM_36270 6e17ce4cdf380ec69ffdeffe333e0bf1 1187 TIGRFAM TIGR02257 cobalto_cobN: cobaltochelatase, CobN subunit 40 1179 0.0 T 13-10-2018 IPR011953 Cobaltochelatase, CobN subunit GO:0009236|GO:0051116 RAM_36270 6e17ce4cdf380ec69ffdeffe333e0bf1 1187 Pfam PF02514 CobN/Magnesium Chelatase 98 1168 0.0 T 13-10-2018 IPR003672 CobN/magnesium chelatase GO:0009058 RAM_41040 921cc99b0883a5e2f507c3e8c26f1ce4 403 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 346 355 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RAM_41040 921cc99b0883a5e2f507c3e8c26f1ce4 403 Pfam PF00067 Cytochrome P450 87 264 1.2E-6 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_41040 921cc99b0883a5e2f507c3e8c26f1ce4 403 Pfam PF00067 Cytochrome P450 278 368 1.1E-16 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_41040 921cc99b0883a5e2f507c3e8c26f1ce4 403 PRINTS PR00359 B-class P450 signature 278 289 7.6E-55 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_41040 921cc99b0883a5e2f507c3e8c26f1ce4 403 PRINTS PR00359 B-class P450 signature 353 364 7.6E-55 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_41040 921cc99b0883a5e2f507c3e8c26f1ce4 403 PRINTS PR00359 B-class P450 signature 91 102 7.6E-55 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_41040 921cc99b0883a5e2f507c3e8c26f1ce4 403 PRINTS PR00359 B-class P450 signature 135 151 7.6E-55 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_41040 921cc99b0883a5e2f507c3e8c26f1ce4 403 PRINTS PR00359 B-class P450 signature 323 338 7.6E-55 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_41040 921cc99b0883a5e2f507c3e8c26f1ce4 403 PRINTS PR00359 B-class P450 signature 152 167 7.6E-55 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_41040 921cc99b0883a5e2f507c3e8c26f1ce4 403 PRINTS PR00359 B-class P450 signature 295 322 7.6E-55 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_41040 921cc99b0883a5e2f507c3e8c26f1ce4 403 PRINTS PR00359 B-class P450 signature 197 219 7.6E-55 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_41040 921cc99b0883a5e2f507c3e8c26f1ce4 403 PRINTS PR00359 B-class P450 signature 344 353 7.6E-55 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_41040 921cc99b0883a5e2f507c3e8c26f1ce4 403 Gene3D G3DSA:1.10.630.10 4 402 4.2E-123 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_41040 921cc99b0883a5e2f507c3e8c26f1ce4 403 SUPERFAMILY SSF48264 11 399 1.07E-88 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_41040 921cc99b0883a5e2f507c3e8c26f1ce4 403 PRINTS PR00385 P450 superfamily signature 243 260 5.7E-6 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_41040 921cc99b0883a5e2f507c3e8c26f1ce4 403 PRINTS PR00385 P450 superfamily signature 278 289 5.7E-6 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_41040 921cc99b0883a5e2f507c3e8c26f1ce4 403 PRINTS PR00385 P450 superfamily signature 353 364 5.7E-6 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_41040 921cc99b0883a5e2f507c3e8c26f1ce4 403 PRINTS PR00385 P450 superfamily signature 344 353 5.7E-6 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_36595 73c0695e07c5eed2643e7e4594788de7 262 Gene3D G3DSA:3.50.50.60 120 234 7.6E-14 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_11030 e8877ac081a5b4644a43dd657d162a98 207 Pfam PF01569 PAP2 superfamily 115 190 2.9E-7 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RAM_11030 e8877ac081a5b4644a43dd657d162a98 207 SUPERFAMILY SSF48317 6 194 5.89E-21 T 13-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily RAM_11030 e8877ac081a5b4644a43dd657d162a98 207 Gene3D G3DSA:1.20.144.10 113 200 7.6E-10 T 13-10-2018 RAM_11030 e8877ac081a5b4644a43dd657d162a98 207 SMART SM00014 83 191 0.0054 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RAM_04985 669e8d4373c2f44345f5e20816b0ee6c 261 Gene3D G3DSA:3.30.540.10 5 140 2.0E-41 T 13-10-2018 RAM_04985 669e8d4373c2f44345f5e20816b0ee6c 261 PRINTS PR00377 Inositol monophosphatase superfamily signature 42 62 1.7E-23 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RAM_04985 669e8d4373c2f44345f5e20816b0ee6c 261 PRINTS PR00377 Inositol monophosphatase superfamily signature 211 235 1.7E-23 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RAM_04985 669e8d4373c2f44345f5e20816b0ee6c 261 PRINTS PR00377 Inositol monophosphatase superfamily signature 136 159 1.7E-23 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RAM_04985 669e8d4373c2f44345f5e20816b0ee6c 261 PRINTS PR00377 Inositol monophosphatase superfamily signature 64 80 1.7E-23 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RAM_04985 669e8d4373c2f44345f5e20816b0ee6c 261 PRINTS PR00377 Inositol monophosphatase superfamily signature 83 99 1.7E-23 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RAM_04985 669e8d4373c2f44345f5e20816b0ee6c 261 Gene3D G3DSA:3.40.190.80 147 260 1.1E-22 T 13-10-2018 RAM_04985 669e8d4373c2f44345f5e20816b0ee6c 261 Pfam PF00459 Inositol monophosphatase family 10 253 3.1E-49 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RAM_04985 669e8d4373c2f44345f5e20816b0ee6c 261 SUPERFAMILY SSF56655 6 259 1.57E-72 T 13-10-2018 RAM_04985 669e8d4373c2f44345f5e20816b0ee6c 261 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 83 96 - T 13-10-2018 IPR020583 Inositol monophosphatase, metal-binding site RAM_04985 669e8d4373c2f44345f5e20816b0ee6c 261 TIGRFAM TIGR02067 his_9_HisN: histidinol-phosphatase 10 259 1.1E-89 T 13-10-2018 IPR011809 Histidinol-phosphate phosphatase, putative, inositol monophosphatase GO:0004401 KEGG: 00340+3.1.3.15 RAM_04985 669e8d4373c2f44345f5e20816b0ee6c 261 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 214 228 - T 13-10-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 RAM_31845 6e73eeabd186a28379eecd6a9918d3bb 305 SUPERFAMILY SSF48179 165 294 8.16E-27 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RAM_31845 6e73eeabd186a28379eecd6a9918d3bb 305 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 2 160 1.6E-41 T 13-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 RAM_31845 6e73eeabd186a28379eecd6a9918d3bb 305 PIRSF PIRSF000103 1 293 1.6E-59 T 13-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 RAM_31845 6e73eeabd186a28379eecd6a9918d3bb 305 Gene3D G3DSA:3.40.50.720 1 164 3.4E-45 T 13-10-2018 RAM_31845 6e73eeabd186a28379eecd6a9918d3bb 305 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 166 287 6.9E-29 T 13-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 RAM_31845 6e73eeabd186a28379eecd6a9918d3bb 305 Gene3D G3DSA:1.10.1040.10 165 296 6.2E-29 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RAM_31845 6e73eeabd186a28379eecd6a9918d3bb 305 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 5 18 - T 13-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 RAM_31845 6e73eeabd186a28379eecd6a9918d3bb 305 SUPERFAMILY SSF51735 1 158 4.23E-41 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_33910 5240c223fadc59bce6ae3f4948959b5d 137 Gene3D G3DSA:1.10.10.10 7 89 2.6E-32 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_33910 5240c223fadc59bce6ae3f4948959b5d 137 SUPERFAMILY SSF46785 14 135 2.62E-36 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_33910 5240c223fadc59bce6ae3f4948959b5d 137 Pfam PF01475 Ferric uptake regulator family 14 130 1.6E-34 T 13-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 RAM_33910 5240c223fadc59bce6ae3f4948959b5d 137 Gene3D G3DSA:3.30.1490.190 90 136 9.1E-22 T 13-10-2018 RAM_22810 8f20349d6cda7cf5c41e01e06da2c2d3 142 Gene3D G3DSA:2.30.110.10 19 114 4.9E-11 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_22810 8f20349d6cda7cf5c41e01e06da2c2d3 142 Pfam PF04075 F420H(2)-dependent quinone reductase 25 94 5.7E-8 T 13-10-2018 IPR004378 F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 RAM_22810 8f20349d6cda7cf5c41e01e06da2c2d3 142 TIGRFAM TIGR00026 hi_GC_TIGR00026: deazaflavin-dependent oxidoreductase, nitroreductase family 25 105 3.8E-13 T 13-10-2018 IPR004378 F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 RAM_23605 5cff3c33b0d141c8d6e20bf3d9589043 280 Pfam PF02673 Bacitracin resistance protein BacA 6 261 2.0E-80 T 13-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 RAM_23605 5cff3c33b0d141c8d6e20bf3d9589043 280 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 1 266 17.374 T 13-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 RAM_23605 5cff3c33b0d141c8d6e20bf3d9589043 280 TIGRFAM TIGR00753 undec_PP_bacA: undecaprenyl-diphosphatase UppP 6 259 6.3E-76 T 13-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 RAM_26260 22ffe34cb91d5e74c871b95e511af47b 101 Pfam PF08980 Domain of unknown function (DUF1883) 2 77 3.1E-22 T 13-10-2018 IPR015073 Domain of unknown function DUF1883 RAM_26260 22ffe34cb91d5e74c871b95e511af47b 101 Gene3D G3DSA:4.10.1210.10 1 97 1.3E-28 T 13-10-2018 IPR036488 Atu1913-like superfamily RAM_26260 22ffe34cb91d5e74c871b95e511af47b 101 SUPERFAMILY SSF141099 3 78 3.92E-20 T 13-10-2018 IPR036488 Atu1913-like superfamily RAM_33390 48eb7cb0f22dc10ec3bf68f90a091c84 211 SUPERFAMILY SSF46689 5 79 5.49E-19 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_33390 48eb7cb0f22dc10ec3bf68f90a091c84 211 Gene3D G3DSA:1.10.357.10 3 188 2.4E-41 T 13-10-2018 RAM_33390 48eb7cb0f22dc10ec3bf68f90a091c84 211 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 61 1.7E-16 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_33390 48eb7cb0f22dc10ec3bf68f90a091c84 211 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 3.9E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_33390 48eb7cb0f22dc10ec3bf68f90a091c84 211 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 3.9E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_19700 887277fa06185ee804f14fa0fc0266dc 130 Pfam PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) 16 52 2.0E-12 T 13-10-2018 IPR022002 Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal RAM_19700 887277fa06185ee804f14fa0fc0266dc 130 Pfam PF01796 DUF35 OB-fold domain, acyl-CoA-associated 53 116 1.4E-21 T 13-10-2018 IPR002878 Domain of unknown function DUF35, OB-fold, C-terminal RAM_19700 887277fa06185ee804f14fa0fc0266dc 130 SUPERFAMILY SSF50249 3 124 8.57E-37 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_01805 bcaa4ac0ea7c701f492bec0d2624ed7e 541 ProSitePatterns PS00095 C-5 cytosine-specific DNA methylases C-terminal signature. 510 528 - T 13-10-2018 IPR031303 DNA methylase, C-5 cytosine-specific, conserved site KEGG: 00270+2.1.1.37 RAM_01805 bcaa4ac0ea7c701f492bec0d2624ed7e 541 SUPERFAMILY SSF53335 6 531 4.15E-39 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_01805 bcaa4ac0ea7c701f492bec0d2624ed7e 541 Gene3D G3DSA:3.40.50.150 1 207 7.5E-26 T 13-10-2018 RAM_01805 bcaa4ac0ea7c701f492bec0d2624ed7e 541 Pfam PF00145 C-5 cytosine-specific DNA methylase 9 192 1.8E-8 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 RAM_01805 bcaa4ac0ea7c701f492bec0d2624ed7e 541 Gene3D G3DSA:3.90.120.10 474 519 3.6E-5 T 13-10-2018 RAM_15300 335873a9b6659a5b25660f6070403b23 171 Gene3D G3DSA:1.20.120.450 1 168 9.4E-63 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_15300 335873a9b6659a5b25660f6070403b23 171 SUPERFAMILY SSF109854 4 166 4.58E-34 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_15300 335873a9b6659a5b25660f6070403b23 171 Pfam PF04978 Protein of unknown function (DUF664) 8 166 4.4E-18 T 13-10-2018 IPR007061 Protein of unknown function DUF664 RAM_35695 61ac2c4403df2ef07821d0af2e269948 317 SUPERFAMILY SSF46785 180 307 7.88E-27 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_35695 61ac2c4403df2ef07821d0af2e269948 317 Pfam PF01638 HxlR-like helix-turn-helix 185 268 5.4E-10 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type RAM_35695 61ac2c4403df2ef07821d0af2e269948 317 Pfam PF01638 HxlR-like helix-turn-helix 21 108 2.2E-14 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type RAM_35695 61ac2c4403df2ef07821d0af2e269948 317 SUPERFAMILY SSF46785 12 145 1.65E-30 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_35695 61ac2c4403df2ef07821d0af2e269948 317 Gene3D G3DSA:1.10.10.10 6 171 2.1E-37 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_35695 61ac2c4403df2ef07821d0af2e269948 317 Gene3D G3DSA:1.10.10.10 179 316 1.0E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_43295 8bc64caca09e85062183e48e5cef35ab 167 Pfam PF13673 Acetyltransferase (GNAT) domain 62 149 2.6E-7 T 13-10-2018 IPR000182 GNAT domain RAM_43295 8bc64caca09e85062183e48e5cef35ab 167 Gene3D G3DSA:3.40.630.30 3 146 1.7E-15 T 13-10-2018 RAM_43295 8bc64caca09e85062183e48e5cef35ab 167 SUPERFAMILY SSF55729 18 157 4.87E-18 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_28015 b7c26e8354447c4c3de2505be291499c 162 Gene3D G3DSA:3.40.50.12740 3 151 9.9E-42 T 13-10-2018 RAM_28015 b7c26e8354447c4c3de2505be291499c 162 SUPERFAMILY SSF52172 2 136 1.01E-31 T 13-10-2018 IPR011006 CheY-like superfamily RAM_28015 b7c26e8354447c4c3de2505be291499c 162 Pfam PF00072 Response regulator receiver domain 5 117 5.3E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_28015 b7c26e8354447c4c3de2505be291499c 162 SMART SM00448 3 118 6.2E-30 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_25165 fdc9b188bf7f45c4b8ff07f6d6304944 222 Gene3D G3DSA:1.10.10.10 117 222 9.6E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_25165 fdc9b188bf7f45c4b8ff07f6d6304944 222 Pfam PF00072 Response regulator receiver domain 5 111 3.2E-23 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_25165 fdc9b188bf7f45c4b8ff07f6d6304944 222 SUPERFAMILY SSF52172 4 185 1.85E-36 T 13-10-2018 IPR011006 CheY-like superfamily RAM_25165 fdc9b188bf7f45c4b8ff07f6d6304944 222 SMART SM00448 3 111 2.6E-35 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_25165 fdc9b188bf7f45c4b8ff07f6d6304944 222 Gene3D G3DSA:3.40.50.2300 1 116 6.4E-32 T 13-10-2018 RAM_25165 fdc9b188bf7f45c4b8ff07f6d6304944 222 Pfam PF00486 Transcriptional regulatory protein, C terminal 148 219 7.4E-22 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_25165 fdc9b188bf7f45c4b8ff07f6d6304944 222 SMART SM00862 147 219 7.5E-24 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_01490 09eaa3a632c9a935a47b08b4e6cc5254 190 SUPERFAMILY SSF48498 80 179 8.58E-10 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_01490 09eaa3a632c9a935a47b08b4e6cc5254 190 SUPERFAMILY SSF46689 3 80 6.98E-19 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_01490 09eaa3a632c9a935a47b08b4e6cc5254 190 Gene3D G3DSA:1.10.357.10 1 188 1.1E-52 T 13-10-2018 RAM_01490 09eaa3a632c9a935a47b08b4e6cc5254 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 35 58 2.8E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_01490 09eaa3a632c9a935a47b08b4e6cc5254 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 2.8E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_01490 09eaa3a632c9a935a47b08b4e6cc5254 190 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 60 1.7E-14 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_26240 6d43d4290cf4d7e6f2828acf352524a3 119 SUPERFAMILY SSF56276 7 117 4.32E-36 T 13-10-2018 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|Reactome: R-HSA-351202 RAM_26240 6d43d4290cf4d7e6f2828acf352524a3 119 Pfam PF02675 S-adenosylmethionine decarboxylase 11 117 1.6E-35 T 13-10-2018 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 RAM_26240 6d43d4290cf4d7e6f2828acf352524a3 119 Hamap MF_00464 S-adenosylmethionine decarboxylase proenzyme [speH]. 5 118 26.586 T 13-10-2018 IPR017716 S-adenosylmethionine decarboxylase proenzyme GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 RAM_26240 6d43d4290cf4d7e6f2828acf352524a3 119 TIGRFAM TIGR03330 SAM_DCase_Bsu: S-adenosylmethionine decarboxylase proenzyme 7 117 6.9E-35 T 13-10-2018 IPR017716 S-adenosylmethionine decarboxylase proenzyme GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 RAM_26240 6d43d4290cf4d7e6f2828acf352524a3 119 Gene3D G3DSA:3.60.90.10 3 119 5.5E-38 T 13-10-2018 RAM_15570 a36e2fe75a8ba35c82cf64e335f5eab7 288 Pfam PF05067 Manganese containing catalase 2 271 3.5E-91 T 13-10-2018 IPR007760 Manganese catalase RAM_15570 a36e2fe75a8ba35c82cf64e335f5eab7 288 SUPERFAMILY SSF47240 2 270 1.62E-85 T 13-10-2018 IPR009078 Ferritin-like superfamily RAM_15570 a36e2fe75a8ba35c82cf64e335f5eab7 288 Gene3D G3DSA:1.20.1260.130 2 252 2.6E-78 T 13-10-2018 RAM_39905 ecb5662329fcedd0e22efdb61d736087 143 Gene3D G3DSA:3.10.450.50 1 129 6.6E-42 T 13-10-2018 RAM_39905 ecb5662329fcedd0e22efdb61d736087 143 SUPERFAMILY SSF54427 2 128 8.79E-35 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_39905 ecb5662329fcedd0e22efdb61d736087 143 Pfam PF12680 SnoaL-like domain 5 112 1.1E-15 T 13-10-2018 IPR037401 SnoaL-like domain RAM_01210 e85090b587341cbd70f329e24f9bc06f 271 Gene3D G3DSA:3.40.50.300 36 262 8.9E-43 T 13-10-2018 RAM_01210 e85090b587341cbd70f329e24f9bc06f 271 Pfam PF00005 ABC transporter 47 177 5.0E-20 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_01210 e85090b587341cbd70f329e24f9bc06f 271 SMART SM00382 56 229 1.3E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_01210 e85090b587341cbd70f329e24f9bc06f 271 SUPERFAMILY SSF52540 45 243 1.09E-43 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_07475 2bcfddc2fc2f5eb07679437101219001 473 SUPERFAMILY SSF55874 311 467 3.14E-38 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_07475 2bcfddc2fc2f5eb07679437101219001 473 SUPERFAMILY SSF51206 6 131 4.32E-21 T 13-10-2018 IPR018490 Cyclic nucleotide-binding-like RAM_07475 2bcfddc2fc2f5eb07679437101219001 473 Gene3D G3DSA:3.30.565.10 321 472 2.5E-41 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_07475 2bcfddc2fc2f5eb07679437101219001 473 PRINTS PR00344 Bacterial sensor protein C-terminal signature 398 412 4.1E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_07475 2bcfddc2fc2f5eb07679437101219001 473 PRINTS PR00344 Bacterial sensor protein C-terminal signature 429 447 4.1E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_07475 2bcfddc2fc2f5eb07679437101219001 473 PRINTS PR00344 Bacterial sensor protein C-terminal signature 416 426 4.1E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_07475 2bcfddc2fc2f5eb07679437101219001 473 PRINTS PR00344 Bacterial sensor protein C-terminal signature 453 466 4.1E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_07475 2bcfddc2fc2f5eb07679437101219001 473 Gene3D G3DSA:2.60.120.10 2 146 8.4E-23 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_07475 2bcfddc2fc2f5eb07679437101219001 473 SMART SM00100 14 136 2.4E-8 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain RAM_07475 2bcfddc2fc2f5eb07679437101219001 473 SMART SM00387 361 469 6.7E-27 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_07475 2bcfddc2fc2f5eb07679437101219001 473 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 364 466 1.2E-19 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_07475 2bcfddc2fc2f5eb07679437101219001 473 Gene3D G3DSA:1.10.287.130 148 234 2.7E-5 T 13-10-2018 RAM_07475 2bcfddc2fc2f5eb07679437101219001 473 ProSitePatterns PS00888 Cyclic nucleotide-binding domain signature 1. 41 57 - T 13-10-2018 IPR018488 Cyclic nucleotide-binding, conserved site RAM_07475 2bcfddc2fc2f5eb07679437101219001 473 Pfam PF00027 Cyclic nucleotide-binding domain 33 119 3.9E-14 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain RAM_36590 e6cc3356eb47e0c745c750544a96389a 350 Gene3D G3DSA:3.50.30.50 73 350 1.4E-8 T 13-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 RAM_36590 e6cc3356eb47e0c745c750544a96389a 350 SUPERFAMILY SSF102198 97 349 3.92E-11 T 13-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 RAM_36590 e6cc3356eb47e0c745c750544a96389a 350 Pfam PF04199 Putative cyclase 97 276 4.3E-13 T 13-10-2018 IPR007325 Kynurenine formamidase/cyclase-like GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 RAM_29060 8bed862ed475d884bd13b451ef394469 193 Gene3D G3DSA:1.20.1290.10 61 183 3.4E-24 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_29060 8bed862ed475d884bd13b451ef394469 193 SUPERFAMILY SSF69118 44 175 1.07E-25 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_25450 3f3f956275d924c8ac37a4fcd4a12064 406 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 168 401 7.2E-81 T 13-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RAM_25450 3f3f956275d924c8ac37a4fcd4a12064 406 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 168 378 2.2E-48 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 RAM_25450 3f3f956275d924c8ac37a4fcd4a12064 406 Pfam PF13241 Putative NAD(P)-binding 10 117 1.0E-20 T 13-10-2018 RAM_25450 3f3f956275d924c8ac37a4fcd4a12064 406 Gene3D G3DSA:3.40.50.720 6 132 2.0E-29 T 13-10-2018 RAM_25450 3f3f956275d924c8ac37a4fcd4a12064 406 SUPERFAMILY SSF51735 5 106 5.71E-17 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_25450 3f3f956275d924c8ac37a4fcd4a12064 406 SUPERFAMILY SSF53790 166 402 5.23E-70 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 RAM_25450 3f3f956275d924c8ac37a4fcd4a12064 406 PIRSF PIRSF036426 152 405 3.0E-90 T 13-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RAM_25450 3f3f956275d924c8ac37a4fcd4a12064 406 PIRSF PIRSF036426 3 158 2.6E-29 T 13-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RAM_25450 3f3f956275d924c8ac37a4fcd4a12064 406 Gene3D G3DSA:3.30.950.10 282 405 6.8E-43 T 13-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 RAM_25450 3f3f956275d924c8ac37a4fcd4a12064 406 Gene3D G3DSA:3.40.1010.10 166 281 3.4E-37 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 RAM_00095 c3aeb4f71c743b998cd1541048a76fa7 383 Pfam PF13560 Helix-turn-helix domain 4 61 1.3E-11 T 13-10-2018 RAM_00095 c3aeb4f71c743b998cd1541048a76fa7 383 SUPERFAMILY SSF47413 3 64 1.31E-13 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_00095 c3aeb4f71c743b998cd1541048a76fa7 383 Gene3D G3DSA:1.10.260.40 2 67 2.0E-14 T 13-10-2018 RAM_00095 c3aeb4f71c743b998cd1541048a76fa7 383 SMART SM00530 7 63 6.6E-10 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_22085 1724c87f608bd661d15d9651da906f09 260 Gene3D G3DSA:3.40.50.720 1 260 3.3E-69 T 13-10-2018 RAM_22085 1724c87f608bd661d15d9651da906f09 260 SUPERFAMILY SSF51735 2 259 2.69E-68 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_22085 1724c87f608bd661d15d9651da906f09 260 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 193 4.0E-4 T 13-10-2018 RAM_22085 1724c87f608bd661d15d9651da906f09 260 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 259 6.9E-50 T 13-10-2018 RAM_22085 1724c87f608bd661d15d9651da906f09 260 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_22085 1724c87f608bd661d15d9651da906f09 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 222 242 1.7E-30 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_22085 1724c87f608bd661d15d9651da906f09 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 1.7E-30 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_22085 1724c87f608bd661d15d9651da906f09 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 1.7E-30 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_22085 1724c87f608bd661d15d9651da906f09 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.7E-30 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_22085 1724c87f608bd661d15d9651da906f09 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 1.7E-30 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_22085 1724c87f608bd661d15d9651da906f09 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 1.7E-30 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_22085 1724c87f608bd661d15d9651da906f09 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 4.7E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_22085 1724c87f608bd661d15d9651da906f09 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 4.7E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_22085 1724c87f608bd661d15d9651da906f09 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 4.7E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_42055 b8d12ba73b0ef4b059cf6ded6f4abc56 497 SUPERFAMILY SSF53474 32 482 7.89E-68 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_42055 b8d12ba73b0ef4b059cf6ded6f4abc56 497 Pfam PF00450 Serine carboxypeptidase 82 455 2.1E-9 T 13-10-2018 IPR001563 Peptidase S10, serine carboxypeptidase GO:0004185|GO:0006508 RAM_42055 b8d12ba73b0ef4b059cf6ded6f4abc56 497 Gene3D G3DSA:3.40.50.1820 64 496 2.3E-14 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_10190 c4e6c12d7854ba0a5c34af3c6ca9a321 144 SMART SM00422 13 83 2.0E-14 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_10190 c4e6c12d7854ba0a5c34af3c6ca9a321 144 Pfam PF13411 MerR HTH family regulatory protein 14 81 1.9E-18 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_10190 c4e6c12d7854ba0a5c34af3c6ca9a321 144 SUPERFAMILY SSF46955 13 128 3.44E-27 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily RAM_10190 c4e6c12d7854ba0a5c34af3c6ca9a321 144 Gene3D G3DSA:1.10.1660.10 13 135 6.2E-30 T 13-10-2018 RAM_10190 c4e6c12d7854ba0a5c34af3c6ca9a321 144 ProSitePatterns PS00552 MerR-type HTH domain signature. 16 38 - T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_11335 02d28b20ff8411081bc5b59a38fe4bb9 297 SUPERFAMILY SSF54675 22 127 6.83E-27 T 13-10-2018 RAM_11335 02d28b20ff8411081bc5b59a38fe4bb9 297 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 27 295 5.0E-89 T 13-10-2018 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|Reactome: R-HSA-196807 RAM_11335 02d28b20ff8411081bc5b59a38fe4bb9 297 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 128 295 7.2E-56 T 13-10-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 Reactome: R-HSA-196807 RAM_11335 02d28b20ff8411081bc5b59a38fe4bb9 297 PIRSF PIRSF006250 19 297 1.2E-92 T 13-10-2018 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Reactome: R-HSA-196807 RAM_11335 02d28b20ff8411081bc5b59a38fe4bb9 297 Gene3D G3DSA:3.90.1170.20 31 294 7.4E-96 T 13-10-2018 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily GO:0016763 Reactome: R-HSA-196807 RAM_11335 02d28b20ff8411081bc5b59a38fe4bb9 297 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 39 126 1.1E-19 T 13-10-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 RAM_11335 02d28b20ff8411081bc5b59a38fe4bb9 297 Gene3D G3DSA:3.20.20.70 132 287 7.4E-96 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_11335 02d28b20ff8411081bc5b59a38fe4bb9 297 SUPERFAMILY SSF51690 128 296 1.02E-56 T 13-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 RAM_17800 2f0c27dbb972556c2cc0fc128335c822 224 Pfam PF00392 Bacterial regulatory proteins, gntR family 2 64 2.3E-13 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_17800 2f0c27dbb972556c2cc0fc128335c822 224 Gene3D G3DSA:1.20.120.530 68 210 1.6E-25 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_17800 2f0c27dbb972556c2cc0fc128335c822 224 Gene3D G3DSA:1.10.10.10 1 65 8.0E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_17800 2f0c27dbb972556c2cc0fc128335c822 224 SMART SM00895 74 203 2.6E-17 T 13-10-2018 IPR011711 GntR, C-terminal RAM_17800 2f0c27dbb972556c2cc0fc128335c822 224 SMART SM00345 6 64 4.0E-7 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_17800 2f0c27dbb972556c2cc0fc128335c822 224 SUPERFAMILY SSF48008 72 209 7.85E-19 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_17800 2f0c27dbb972556c2cc0fc128335c822 224 Pfam PF07729 FCD domain 74 202 2.6E-25 T 13-10-2018 IPR011711 GntR, C-terminal RAM_17800 2f0c27dbb972556c2cc0fc128335c822 224 SUPERFAMILY SSF46785 2 68 1.87E-13 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_46245 6b9b9077e0cbfb115d5373fa2d0066c4 198 SUPERFAMILY SSF50891 75 197 6.83E-40 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily RAM_46245 6b9b9077e0cbfb115d5373fa2d0066c4 198 Gene3D G3DSA:2.40.100.10 70 198 2.5E-54 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily RAM_46245 6b9b9077e0cbfb115d5373fa2d0066c4 198 Pfam PF02682 Carboxyltransferase domain, subdomain C and D 1 185 3.7E-59 T 13-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D RAM_46245 6b9b9077e0cbfb115d5373fa2d0066c4 198 SMART SM00796 1 186 1.8E-76 T 13-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D RAM_46245 6b9b9077e0cbfb115d5373fa2d0066c4 198 Gene3D G3DSA:3.30.1360.40 2 69 1.2E-14 T 13-10-2018 RAM_46245 6b9b9077e0cbfb115d5373fa2d0066c4 198 SUPERFAMILY SSF160467 2 50 6.28E-6 T 13-10-2018 RAM_32225 c684a2d579fed7840f2d420b325f6fbf 213 Pfam PF01066 CDP-alcohol phosphatidyltransferase 31 101 1.1E-14 T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RAM_32225 c684a2d579fed7840f2d420b325f6fbf 213 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 31 200 8.9E-38 T 13-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 RAM_32225 c684a2d579fed7840f2d420b325f6fbf 213 PIRSF PIRSF000847 28 210 3.7E-47 T 13-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 RAM_32225 c684a2d579fed7840f2d420b325f6fbf 213 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 79 101 - T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RAM_32225 c684a2d579fed7840f2d420b325f6fbf 213 Gene3D G3DSA:1.20.120.1760 30 203 4.1E-9 T 13-10-2018 RAM_22300 4c4b9fd70fe526e28b4aaeaed3722783 219 Gene3D G3DSA:3.40.50.12740 3 212 1.9E-62 T 13-10-2018 RAM_22300 4c4b9fd70fe526e28b4aaeaed3722783 219 SUPERFAMILY SSF52172 2 132 3.27E-27 T 13-10-2018 IPR011006 CheY-like superfamily RAM_22300 4c4b9fd70fe526e28b4aaeaed3722783 219 ProSitePatterns PS00622 LuxR-type HTH domain signature. 168 195 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_22300 4c4b9fd70fe526e28b4aaeaed3722783 219 Pfam PF00072 Response regulator receiver domain 5 118 7.9E-22 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_22300 4c4b9fd70fe526e28b4aaeaed3722783 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 154 168 4.3E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_22300 4c4b9fd70fe526e28b4aaeaed3722783 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 184 196 4.3E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_22300 4c4b9fd70fe526e28b4aaeaed3722783 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 168 184 4.3E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_22300 4c4b9fd70fe526e28b4aaeaed3722783 219 SMART SM00448 3 117 4.4E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_22300 4c4b9fd70fe526e28b4aaeaed3722783 219 Pfam PF00196 Bacterial regulatory proteins, luxR family 153 208 7.0E-19 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_22300 4c4b9fd70fe526e28b4aaeaed3722783 219 SMART SM00421 151 208 6.2E-25 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_22300 4c4b9fd70fe526e28b4aaeaed3722783 219 SUPERFAMILY SSF46894 144 210 3.4E-20 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_41430 90ebfa37d5a918021e43002b3526f6a1 283 Pfam PF13560 Helix-turn-helix domain 6 82 1.3E-16 T 13-10-2018 RAM_41430 90ebfa37d5a918021e43002b3526f6a1 283 Gene3D G3DSA:3.30.450.180 104 259 4.3E-15 T 13-10-2018 RAM_41430 90ebfa37d5a918021e43002b3526f6a1 283 SUPERFAMILY SSF47413 31 81 8.89E-10 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_41430 90ebfa37d5a918021e43002b3526f6a1 283 Gene3D G3DSA:1.10.260.40 28 103 1.3E-9 T 13-10-2018 RAM_41430 90ebfa37d5a918021e43002b3526f6a1 283 SMART SM00530 10 83 5.8E-9 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_13440 65a6e32bf15fd86fc54c05a3a55f0066 466 SUPERFAMILY SSF51905 2 461 1.83E-45 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_13440 65a6e32bf15fd86fc54c05a3a55f0066 466 Gene3D G3DSA:3.90.660.20 37 411 3.1E-114 T 13-10-2018 RAM_13440 65a6e32bf15fd86fc54c05a3a55f0066 466 Gene3D G3DSA:1.10.3110.10 101 194 3.1E-114 T 13-10-2018 RAM_13440 65a6e32bf15fd86fc54c05a3a55f0066 466 TIGRFAM TIGR00562 proto_IX_ox: protoporphyrinogen oxidase 2 464 3.7E-50 T 13-10-2018 IPR004572 Protoporphyrinogen oxidase GO:0004729|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.4|MetaCyc: PWY-7159|Reactome: R-HSA-189451 RAM_13440 65a6e32bf15fd86fc54c05a3a55f0066 466 SUPERFAMILY SSF54373 302 412 1.29E-19 T 13-10-2018 RAM_13440 65a6e32bf15fd86fc54c05a3a55f0066 466 Pfam PF01593 Flavin containing amine oxidoreductase 11 461 4.9E-44 T 13-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 RAM_13440 65a6e32bf15fd86fc54c05a3a55f0066 466 Gene3D G3DSA:3.50.50.60 5 453 3.1E-114 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_45490 793b83012af982f382375aed329359c7 603 Gene3D G3DSA:3.90.870.20 393 596 4.1E-85 T 13-10-2018 IPR038152 Carbamoyltransferase, C-terminal domain superfamily RAM_45490 793b83012af982f382375aed329359c7 603 Gene3D G3DSA:3.30.420.350 157 371 6.8E-64 T 13-10-2018 RAM_45490 793b83012af982f382375aed329359c7 603 Pfam PF02543 Carbamoyltransferase N-terminus 3 66 3.0E-14 T 13-10-2018 IPR003696 Carbamoyltransferase GO:0003824|GO:0009058 RAM_45490 793b83012af982f382375aed329359c7 603 Pfam PF02543 Carbamoyltransferase N-terminus 153 378 1.8E-48 T 13-10-2018 IPR003696 Carbamoyltransferase GO:0003824|GO:0009058 RAM_45490 793b83012af982f382375aed329359c7 603 Pfam PF16861 Carbamoyltransferase C-terminus 428 597 3.4E-71 T 13-10-2018 IPR031730 Carbamoyltransferase, C-terminal RAM_45490 793b83012af982f382375aed329359c7 603 Gene3D G3DSA:3.30.420.40 1 88 1.7E-30 T 13-10-2018 RAM_45490 793b83012af982f382375aed329359c7 603 SUPERFAMILY SSF53067 2 378 9.06E-11 T 13-10-2018 RAM_30650 09466daffd407be71c570f102494f7ba 269 Gene3D G3DSA:3.30.450.40 97 266 7.4E-46 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_30650 09466daffd407be71c570f102494f7ba 269 Pfam PF01614 Bacterial transcriptional regulator 140 259 1.2E-28 T 13-10-2018 IPR014757 Transcription regulator IclR, C-terminal RAM_30650 09466daffd407be71c570f102494f7ba 269 Gene3D G3DSA:1.10.10.10 6 82 8.4E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_30650 09466daffd407be71c570f102494f7ba 269 SMART SM00346 21 111 7.5E-14 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RAM_30650 09466daffd407be71c570f102494f7ba 269 SUPERFAMILY SSF55781 92 263 8.5E-42 T 13-10-2018 RAM_30650 09466daffd407be71c570f102494f7ba 269 SUPERFAMILY SSF46785 21 94 1.42E-14 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_30650 09466daffd407be71c570f102494f7ba 269 Pfam PF09339 IclR helix-turn-helix domain 23 73 2.7E-12 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RAM_05600 2671ec5e8fd941c0cd0c16a90667cd16 287 SUPERFAMILY SSF89550 1 265 3.73E-42 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 RAM_05600 2671ec5e8fd941c0cd0c16a90667cd16 287 Gene3D G3DSA:1.10.150.650 101 173 1.5E-73 T 13-10-2018 RAM_05600 2671ec5e8fd941c0cd0c16a90667cd16 287 Pfam PF02811 PHP domain 4 169 1.2E-6 T 13-10-2018 IPR004013 PHP domain GO:0003824 RAM_05600 2671ec5e8fd941c0cd0c16a90667cd16 287 Gene3D G3DSA:3.20.20.140 3 254 1.5E-73 T 13-10-2018 RAM_05600 2671ec5e8fd941c0cd0c16a90667cd16 287 SMART SM00481 3 67 6.7E-16 T 13-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal RAM_08790 a1268202569cac4a56f4c7d56b03dbb8 338 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 184 324 5.9E-50 T 13-10-2018 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 RAM_08790 a1268202569cac4a56f4c7d56b03dbb8 338 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 192 213 - T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 RAM_08790 a1268202569cac4a56f4c7d56b03dbb8 338 Gene3D G3DSA:3.40.50.720 1 191 1.1E-63 T 13-10-2018 RAM_08790 a1268202569cac4a56f4c7d56b03dbb8 338 Gene3D G3DSA:1.10.1040.10 193 338 1.5E-49 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RAM_08790 a1268202569cac4a56f4c7d56b03dbb8 338 PIRSF PIRSF000114 1 337 1.3E-100 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 RAM_08790 a1268202569cac4a56f4c7d56b03dbb8 338 SUPERFAMILY SSF51735 5 184 4.32E-52 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_08790 a1268202569cac4a56f4c7d56b03dbb8 338 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 137 157 1.0E-46 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 RAM_08790 a1268202569cac4a56f4c7d56b03dbb8 338 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 177 201 1.0E-46 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 RAM_08790 a1268202569cac4a56f4c7d56b03dbb8 338 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 10 27 1.0E-46 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 RAM_08790 a1268202569cac4a56f4c7d56b03dbb8 338 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 242 259 1.0E-46 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 RAM_08790 a1268202569cac4a56f4c7d56b03dbb8 338 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 60 87 1.0E-46 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 RAM_08790 a1268202569cac4a56f4c7d56b03dbb8 338 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 202 226 1.0E-46 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 RAM_08790 a1268202569cac4a56f4c7d56b03dbb8 338 SUPERFAMILY SSF48179 183 336 8.84E-52 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RAM_08790 a1268202569cac4a56f4c7d56b03dbb8 338 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 8 164 1.2E-53 T 13-10-2018 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 RAM_08790 a1268202569cac4a56f4c7d56b03dbb8 338 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 6 327 36.835 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 RAM_08375 4b25d90ca08331ba5500f1526886096d 162 ProSitePatterns PS00460 Glutathione peroxidases active site. 23 38 - T 13-10-2018 IPR029759 Glutathione peroxidase active site Reactome: R-HSA-3299685 RAM_08375 4b25d90ca08331ba5500f1526886096d 162 Pfam PF00255 Glutathione peroxidase 3 109 8.1E-40 T 13-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 RAM_08375 4b25d90ca08331ba5500f1526886096d 162 PRINTS PR01011 Glutathione peroxidase family signature 21 38 1.9E-19 T 13-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 RAM_08375 4b25d90ca08331ba5500f1526886096d 162 PRINTS PR01011 Glutathione peroxidase family signature 122 131 1.9E-19 T 13-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 RAM_08375 4b25d90ca08331ba5500f1526886096d 162 PRINTS PR01011 Glutathione peroxidase family signature 56 72 1.9E-19 T 13-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 RAM_08375 4b25d90ca08331ba5500f1526886096d 162 SUPERFAMILY SSF52833 2 160 4.15E-55 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RAM_08375 4b25d90ca08331ba5500f1526886096d 162 ProSitePatterns PS00763 Glutathione peroxidases signature 2. 59 66 - T 13-10-2018 IPR029760 Glutathione peroxidase conserved site Reactome: R-HSA-3299685 RAM_08375 4b25d90ca08331ba5500f1526886096d 162 PIRSF PIRSF000303 1 162 2.4E-61 T 13-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 RAM_08375 4b25d90ca08331ba5500f1526886096d 162 Gene3D G3DSA:3.40.30.10 1 162 3.1E-60 T 13-10-2018 RAM_02395 bf55039aed2c618796634149b76c1031 78 SUPERFAMILY SSF46955 24 71 3.11E-5 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily RAM_02395 bf55039aed2c618796634149b76c1031 78 Gene3D G3DSA:1.10.1660.10 22 72 3.7E-10 T 13-10-2018 RAM_02395 bf55039aed2c618796634149b76c1031 78 Pfam PF12728 Helix-turn-helix domain 24 72 1.6E-15 T 13-10-2018 RAM_02395 bf55039aed2c618796634149b76c1031 78 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 24 70 2.0E-20 T 13-10-2018 IPR010093 SinI-like, DNA-binding domain GO:0003677 RAM_15605 71dab1e53bc032a93ec5b0cdb6703e9b 412 Gene3D G3DSA:3.40.50.1110 191 409 7.0E-29 T 13-10-2018 IPR036514 SGNH hydrolase superfamily RAM_15605 71dab1e53bc032a93ec5b0cdb6703e9b 412 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 207 399 5.2E-21 T 13-10-2018 IPR013830 SGNH hydrolase-type esterase domain RAM_15605 71dab1e53bc032a93ec5b0cdb6703e9b 412 SUPERFAMILY SSF52266 201 409 9.83E-40 T 13-10-2018 RAM_04350 d7f47f7572477e83596bde13333e358c 115 Gene3D G3DSA:1.20.1300.10 1 105 4.5E-17 T 13-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_04350 d7f47f7572477e83596bde13333e358c 115 TIGRFAM TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit 1 97 1.3E-25 T 13-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_04350 d7f47f7572477e83596bde13333e358c 115 SUPERFAMILY SSF81343 1 102 1.11E-23 T 13-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_04350 d7f47f7572477e83596bde13333e358c 115 PIRSF PIRSF000178 1 105 1.9E-9 T 13-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_04350 d7f47f7572477e83596bde13333e358c 115 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 1 96 1.6E-20 T 13-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_39560 334884ab62ca4fcf8ac661e800e00308 183 Gene3D G3DSA:2.60.40.1240 90 178 1.2E-5 T 13-10-2018 IPR029050 Immunoprotective extracellular, immunoglobulin-like domain superfamily RAM_32520 7d5a308ba5c2475f69558f8f3086de14 311 Pfam PF14530 Domain of unknown function (DUF4439) 175 310 8.3E-39 T 13-10-2018 IPR029447 Domain of unknown function DUF4439 RAM_32520 7d5a308ba5c2475f69558f8f3086de14 311 Gene3D G3DSA:1.20.1260.10 169 299 8.0E-36 T 13-10-2018 IPR012347 Ferritin-like RAM_32520 7d5a308ba5c2475f69558f8f3086de14 311 SUPERFAMILY SSF47240 168 307 7.3E-33 T 13-10-2018 IPR009078 Ferritin-like superfamily RAM_32490 81763158930a754871e8affc3fb67da5 158 Gene3D G3DSA:3.30.300.20 3 121 2.4E-23 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta RAM_32490 81763158930a754871e8affc3fb67da5 158 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 9 100 1.0E-26 T 13-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 RAM_32490 81763158930a754871e8affc3fb67da5 158 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 1 115 5.7E-20 T 13-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 RAM_32490 81763158930a754871e8affc3fb67da5 158 Pfam PF02033 Ribosome-binding factor A 6 113 1.3E-24 T 13-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 RAM_32490 81763158930a754871e8affc3fb67da5 158 SUPERFAMILY SSF89919 1 116 1.1E-25 T 13-10-2018 IPR023799 Ribosome-binding factor A domain superfamily RAM_32490 81763158930a754871e8affc3fb67da5 158 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 5 113 22.831 T 13-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 RAM_32490 81763158930a754871e8affc3fb67da5 158 ProSitePatterns PS01319 Ribosome-binding factor A signature. 79 100 - T 13-10-2018 IPR020053 Ribosome-binding factor A, conserved site GO:0006364 RAM_17520 7f17f83b70cfd7e206d609baba0bb502 247 Gene3D G3DSA:3.40.50.720 2 246 3.5E-28 T 13-10-2018 RAM_17520 7f17f83b70cfd7e206d609baba0bb502 247 SUPERFAMILY SSF51735 1 215 2.57E-31 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_17520 7f17f83b70cfd7e206d609baba0bb502 247 Pfam PF13460 NAD(P)H-binding 7 135 5.8E-10 T 13-10-2018 IPR016040 NAD(P)-binding domain RAM_09085 f5371e3ffd410672619dd0ed2cf0fd67 230 Gene3D G3DSA:3.10.450.30 147 230 1.5E-12 T 13-10-2018 RAM_09085 f5371e3ffd410672619dd0ed2cf0fd67 230 SUPERFAMILY SSF53933 45 135 7.94E-32 T 13-10-2018 IPR016191 Ribonuclease/ribotoxin GO:0003723|GO:0004540 RAM_09085 f5371e3ffd410672619dd0ed2cf0fd67 230 SUPERFAMILY SSF53933 153 227 1.11E-12 T 13-10-2018 IPR016191 Ribonuclease/ribotoxin GO:0003723|GO:0004540 RAM_09085 f5371e3ffd410672619dd0ed2cf0fd67 230 Pfam PF00545 ribonuclease 53 132 1.2E-26 T 13-10-2018 IPR000026 Guanine-specific ribonuclease N1/T1/U2 GO:0003723|GO:0004521 RAM_09085 f5371e3ffd410672619dd0ed2cf0fd67 230 Pfam PF00545 ribonuclease 172 225 3.7E-7 T 13-10-2018 IPR000026 Guanine-specific ribonuclease N1/T1/U2 GO:0003723|GO:0004521 RAM_09085 f5371e3ffd410672619dd0ed2cf0fd67 230 Gene3D G3DSA:3.10.450.30 42 138 1.0E-33 T 13-10-2018 RAM_32545 068fae3a911f94a70e6f808bee0bf51c 64 SUPERFAMILY SSF46689 2 41 1.55E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_32545 068fae3a911f94a70e6f808bee0bf51c 64 Gene3D G3DSA:1.10.357.10 1 59 2.8E-15 T 13-10-2018 RAM_32545 068fae3a911f94a70e6f808bee0bf51c 64 Pfam PF00440 Bacterial regulatory proteins, tetR family 5 40 3.7E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_47850 03653e9afdb34ddce6bd1ce7653cd215 139 Pfam PF13630 SdpI/YhfL protein family 29 95 5.4E-9 T 13-10-2018 IPR025962 SdpI/YhfL protein family RAM_43440 8eb6961f8faeccfac5bb9414b66191f2 507 Pfam PF01979 Amidohydrolase family 358 470 1.3E-12 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RAM_43440 8eb6961f8faeccfac5bb9414b66191f2 507 SUPERFAMILY SSF51556 98 435 1.7E-44 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_43440 8eb6961f8faeccfac5bb9414b66191f2 507 SUPERFAMILY SSF51338 43 471 1.33E-17 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_43440 8eb6961f8faeccfac5bb9414b66191f2 507 Gene3D G3DSA:2.30.40.10 40 106 3.1E-10 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_32660 a59e843fea86eb267c61ed935c586bd8 398 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 23 134 2.3E-20 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_32660 a59e843fea86eb267c61ed935c586bd8 398 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 350 369 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RAM_32660 a59e843fea86eb267c61ed935c586bd8 398 SUPERFAMILY SSF56645 12 244 1.83E-64 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_32660 a59e843fea86eb267c61ed935c586bd8 398 Gene3D G3DSA:1.20.140.10 246 397 1.3E-38 T 13-10-2018 RAM_32660 a59e843fea86eb267c61ed935c586bd8 398 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 141 153 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RAM_32660 a59e843fea86eb267c61ed935c586bd8 398 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 248 391 8.5E-28 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_32660 a59e843fea86eb267c61ed935c586bd8 398 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 139 232 1.8E-21 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RAM_32660 a59e843fea86eb267c61ed935c586bd8 398 Gene3D G3DSA:2.40.110.10 138 243 1.6E-33 T 13-10-2018 RAM_32660 a59e843fea86eb267c61ed935c586bd8 398 SUPERFAMILY SSF47203 246 395 1.56E-39 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_32660 a59e843fea86eb267c61ed935c586bd8 398 Gene3D G3DSA:1.10.540.10 5 136 4.4E-29 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_14760 8c4da8d56661d688202d4b3368ee6d86 197 Gene3D G3DSA:1.10.10.60 1 53 1.6E-22 T 13-10-2018 RAM_14760 8c4da8d56661d688202d4b3368ee6d86 197 SUPERFAMILY SSF48498 85 197 1.15E-23 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_14760 8c4da8d56661d688202d4b3368ee6d86 197 SUPERFAMILY SSF46689 10 77 9.75E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_14760 8c4da8d56661d688202d4b3368ee6d86 197 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 63 5.9E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_14760 8c4da8d56661d688202d4b3368ee6d86 197 Gene3D G3DSA:1.10.357.10 54 197 7.8E-32 T 13-10-2018 RAM_31480 446cdbb4131c14779ca93300cba820fb 383 Pfam PF13458 Periplasmic binding protein 33 368 2.1E-53 T 13-10-2018 IPR028081 Leucine-binding protein domain RAM_31480 446cdbb4131c14779ca93300cba820fb 383 Gene3D G3DSA:3.40.50.2300 151 279 1.9E-83 T 13-10-2018 RAM_31480 446cdbb4131c14779ca93300cba820fb 383 SUPERFAMILY SSF53822 33 370 1.01E-74 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_31480 446cdbb4131c14779ca93300cba820fb 383 Gene3D G3DSA:3.40.50.2300 35 350 1.9E-83 T 13-10-2018 RAM_43035 8b2be7f7a7f6cdca48a0e2d07be2c79d 240 SUPERFAMILY SSF46785 19 89 1.4E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_43035 8b2be7f7a7f6cdca48a0e2d07be2c79d 240 SUPERFAMILY SSF48008 90 225 1.26E-28 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_43035 8b2be7f7a7f6cdca48a0e2d07be2c79d 240 Gene3D G3DSA:1.10.10.10 13 86 6.0E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_43035 8b2be7f7a7f6cdca48a0e2d07be2c79d 240 Pfam PF00392 Bacterial regulatory proteins, gntR family 23 85 1.6E-13 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_43035 8b2be7f7a7f6cdca48a0e2d07be2c79d 240 SMART SM00895 95 217 8.2E-18 T 13-10-2018 IPR011711 GntR, C-terminal RAM_43035 8b2be7f7a7f6cdca48a0e2d07be2c79d 240 Gene3D G3DSA:1.20.120.530 88 236 2.1E-32 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_43035 8b2be7f7a7f6cdca48a0e2d07be2c79d 240 SMART SM00345 27 85 6.9E-10 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_43035 8b2be7f7a7f6cdca48a0e2d07be2c79d 240 Pfam PF07729 FCD domain 95 215 3.6E-16 T 13-10-2018 IPR011711 GntR, C-terminal RAM_29965 7f4473edfda2dce673a3d4912d5a25c4 195 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 2.2E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_29965 7f4473edfda2dce673a3d4912d5a25c4 195 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 2.2E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_29965 7f4473edfda2dce673a3d4912d5a25c4 195 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 61 2.5E-13 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_29965 7f4473edfda2dce673a3d4912d5a25c4 195 Pfam PF13977 BetI-type transcriptional repressor, C-terminal 108 178 9.3E-8 T 13-10-2018 IPR039538 BetI-type transcriptional repressor, C-terminal RAM_29965 7f4473edfda2dce673a3d4912d5a25c4 195 Gene3D G3DSA:1.10.357.10 7 194 1.0E-36 T 13-10-2018 RAM_29965 7f4473edfda2dce673a3d4912d5a25c4 195 SUPERFAMILY SSF48498 82 179 8.62E-18 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_29965 7f4473edfda2dce673a3d4912d5a25c4 195 SUPERFAMILY SSF46689 7 70 1.05E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_22975 6ca8015227b8122df598e3ae4d9d8801 1010 SUPERFAMILY SSF55545 45 160 5.75E-6 T 13-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 RAM_22975 6ca8015227b8122df598e3ae4d9d8801 1010 Gene3D G3DSA:2.60.120.1620 824 1008 8.2E-64 T 13-10-2018 RAM_22975 6ca8015227b8122df598e3ae4d9d8801 1010 Gene3D G3DSA:3.30.379.10 27 182 1.4E-46 T 13-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 RAM_22975 6ca8015227b8122df598e3ae4d9d8801 1010 Gene3D G3DSA:3.20.20.520 183 500 6.2E-106 T 13-10-2018 RAM_22975 6ca8015227b8122df598e3ae4d9d8801 1010 Pfam PF15979 Glycosyl hydrolase family 115 179 543 1.6E-126 T 13-10-2018 IPR031924 Glycosyl hydrolase family 115 RAM_22975 6ca8015227b8122df598e3ae4d9d8801 1010 Gene3D G3DSA:1.20.58.2150 502 698 3.5E-43 T 13-10-2018 RAM_14635 5d370f4cfafb96e8db8c5a13efc62798 972 SUPERFAMILY SSF51998 353 894 1.4E-179 T 13-10-2018 RAM_14635 5d370f4cfafb96e8db8c5a13efc62798 972 Gene3D G3DSA:3.20.70.20 224 900 5.1E-245 T 13-10-2018 RAM_14635 5d370f4cfafb96e8db8c5a13efc62798 972 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 277 350 5.3E-21 T 13-10-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RAM_14635 5d370f4cfafb96e8db8c5a13efc62798 972 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 281 892 7.6E-212 T 13-10-2018 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RAM_14635 5d370f4cfafb96e8db8c5a13efc62798 972 SUPERFAMILY SSF48168 136 352 4.45E-58 T 13-10-2018 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RAM_14635 5d370f4cfafb96e8db8c5a13efc62798 972 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 733 755 - T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RAM_14635 5d370f4cfafb96e8db8c5a13efc62798 972 Pfam PF03477 ATP cone domain 18 115 2.2E-18 T 13-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 RAM_14635 5d370f4cfafb96e8db8c5a13efc62798 972 Pfam PF02867 Ribonucleotide reductase, barrel domain 354 889 2.9E-181 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RAM_14635 5d370f4cfafb96e8db8c5a13efc62798 972 PRINTS PR01183 Ribonucleotide reductase large chain signature 667 690 8.2E-46 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RAM_14635 5d370f4cfafb96e8db8c5a13efc62798 972 PRINTS PR01183 Ribonucleotide reductase large chain signature 429 448 8.2E-46 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RAM_14635 5d370f4cfafb96e8db8c5a13efc62798 972 PRINTS PR01183 Ribonucleotide reductase large chain signature 601 624 8.2E-46 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RAM_14635 5d370f4cfafb96e8db8c5a13efc62798 972 PRINTS PR01183 Ribonucleotide reductase large chain signature 639 661 8.2E-46 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RAM_14635 5d370f4cfafb96e8db8c5a13efc62798 972 PRINTS PR01183 Ribonucleotide reductase large chain signature 564 575 8.2E-46 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RAM_14635 5d370f4cfafb96e8db8c5a13efc62798 972 PRINTS PR01183 Ribonucleotide reductase large chain signature 744 771 8.2E-46 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RAM_04425 14762f781347bf842d9b0e110254ba18 193 Gene3D G3DSA:3.40.50.720 1 180 2.2E-42 T 13-10-2018 RAM_04425 14762f781347bf842d9b0e110254ba18 193 SUPERFAMILY SSF51735 1 181 1.0E-30 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_04425 14762f781347bf842d9b0e110254ba18 193 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 2 87 1.1E-13 T 13-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal RAM_24445 a65e6877294a5b2eca117daac2eb43b4 420 Pfam PF05977 Transmembrane secretion effector 12 414 4.4E-26 T 13-10-2018 IPR010290 Transmembrane secretion effector RAM_24445 a65e6877294a5b2eca117daac2eb43b4 420 Gene3D G3DSA:1.20.1250.20 2 395 3.4E-40 T 13-10-2018 RAM_24445 a65e6877294a5b2eca117daac2eb43b4 420 SUPERFAMILY SSF103473 5 401 1.05E-47 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_42255 64ad75d8a508f1430c62268cf086be57 242 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 237 2.1E-40 T 13-10-2018 RAM_42255 64ad75d8a508f1430c62268cf086be57 242 SUPERFAMILY SSF51735 4 240 3.17E-55 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_42255 64ad75d8a508f1430c62268cf086be57 242 Gene3D G3DSA:3.40.50.720 2 240 1.2E-54 T 13-10-2018 RAM_42255 64ad75d8a508f1430c62268cf086be57 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 184 3.8E-28 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_42255 64ad75d8a508f1430c62268cf086be57 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 3.8E-28 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_42255 64ad75d8a508f1430c62268cf086be57 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 202 222 3.8E-28 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_42255 64ad75d8a508f1430c62268cf086be57 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 3.8E-28 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_42255 64ad75d8a508f1430c62268cf086be57 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 123 139 3.8E-28 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_42255 64ad75d8a508f1430c62268cf086be57 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 72 83 3.8E-28 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_42255 64ad75d8a508f1430c62268cf086be57 242 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 72 83 2.8E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_42255 64ad75d8a508f1430c62268cf086be57 242 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 165 2.8E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_42255 64ad75d8a508f1430c62268cf086be57 242 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 129 137 2.8E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_09700 f6b45f5feecc0be8e4b59d075cbbf934 395 Gene3D G3DSA:3.20.20.60 55 326 5.0E-14 T 13-10-2018 RAM_09700 f6b45f5feecc0be8e4b59d075cbbf934 395 SUPERFAMILY SSF51621 78 320 1.67E-15 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 RAM_09700 f6b45f5feecc0be8e4b59d075cbbf934 395 Pfam PF01274 Malate synthase 164 240 5.0E-6 T 13-10-2018 IPR001465 Malate synthase GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 RAM_28875 0cf8f2a8efa116b556c48bc8251e990d 267 SMART SM00382 38 254 2.0E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_28875 0cf8f2a8efa116b556c48bc8251e990d 267 Pfam PF00005 ABC transporter 29 186 3.4E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_28875 0cf8f2a8efa116b556c48bc8251e990d 267 SUPERFAMILY SSF52540 13 254 2.23E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_28875 0cf8f2a8efa116b556c48bc8251e990d 267 Gene3D G3DSA:3.40.50.300 11 265 2.3E-64 T 13-10-2018 RAM_28875 0cf8f2a8efa116b556c48bc8251e990d 267 ProSitePatterns PS00211 ABC transporters family signature. 159 173 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_28645 54375651a08e10c6dafa939ddf52d74f 245 SUPERFAMILY SSF88659 3 62 1.14E-9 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_28645 54375651a08e10c6dafa939ddf52d74f 245 Pfam PF08281 Sigma-70, region 4 9 60 1.4E-8 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_28645 54375651a08e10c6dafa939ddf52d74f 245 Gene3D G3DSA:1.10.10.10 16 64 1.5E-5 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_27365 ac5d8e7ba3fc2cb9339fdd46fc44d5b7 435 Gene3D G3DSA:3.40.190.10 144 412 3.2E-110 T 13-10-2018 RAM_27365 ac5d8e7ba3fc2cb9339fdd46fc44d5b7 435 Gene3D G3DSA:3.40.190.10 50 351 3.2E-110 T 13-10-2018 RAM_27365 ac5d8e7ba3fc2cb9339fdd46fc44d5b7 435 Pfam PF01547 Bacterial extracellular solute-binding protein 46 326 3.7E-40 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein RAM_27365 ac5d8e7ba3fc2cb9339fdd46fc44d5b7 435 SUPERFAMILY SSF53850 36 417 9.78E-64 T 13-10-2018 RAM_02440 37dc593717ac447ab55e12803a8232a2 230 Pfam PF04542 Sigma-70 region 2 63 130 9.0E-14 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_02440 37dc593717ac447ab55e12803a8232a2 230 Gene3D G3DSA:1.10.10.10 152 226 1.4E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_02440 37dc593717ac447ab55e12803a8232a2 230 Pfam PF08281 Sigma-70, region 4 169 221 4.8E-14 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_02440 37dc593717ac447ab55e12803a8232a2 230 SUPERFAMILY SSF88946 43 143 1.53E-24 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_02440 37dc593717ac447ab55e12803a8232a2 230 SUPERFAMILY SSF88659 158 225 1.68E-14 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_02440 37dc593717ac447ab55e12803a8232a2 230 Gene3D G3DSA:1.10.1740.10 36 127 3.6E-24 T 13-10-2018 RAM_02440 37dc593717ac447ab55e12803a8232a2 230 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 59 224 3.1E-26 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_05530 8bcfe2f273a2c106ca1ea318d42ef11c 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 158 172 1.3E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_05530 8bcfe2f273a2c106ca1ea318d42ef11c 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 188 200 1.3E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_05530 8bcfe2f273a2c106ca1ea318d42ef11c 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 172 188 1.3E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_05530 8bcfe2f273a2c106ca1ea318d42ef11c 219 Pfam PF00072 Response regulator receiver domain 7 119 5.3E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_05530 8bcfe2f273a2c106ca1ea318d42ef11c 219 SUPERFAMILY SSF52172 4 138 5.98E-32 T 13-10-2018 IPR011006 CheY-like superfamily RAM_05530 8bcfe2f273a2c106ca1ea318d42ef11c 219 ProSitePatterns PS00622 LuxR-type HTH domain signature. 172 199 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_05530 8bcfe2f273a2c106ca1ea318d42ef11c 219 SMART SM00421 155 212 5.7E-28 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_05530 8bcfe2f273a2c106ca1ea318d42ef11c 219 Pfam PF00196 Bacterial regulatory proteins, luxR family 157 212 2.9E-20 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_05530 8bcfe2f273a2c106ca1ea318d42ef11c 219 SMART SM00448 5 120 4.0E-32 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_05530 8bcfe2f273a2c106ca1ea318d42ef11c 219 SUPERFAMILY SSF46894 149 217 4.08E-24 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_05530 8bcfe2f273a2c106ca1ea318d42ef11c 219 Gene3D G3DSA:3.40.50.12740 5 218 2.7E-69 T 13-10-2018 RAM_17460 b1543a0e0ee1894b00f6045e607340e7 311 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 137 151 - T 13-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 RAM_17460 b1543a0e0ee1894b00f6045e607340e7 311 Pfam PF00849 RNA pseudouridylate synthase 98 244 5.5E-19 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RAM_17460 b1543a0e0ee1894b00f6045e607340e7 311 Gene3D G3DSA:3.30.2350.10 83 295 1.5E-42 T 13-10-2018 RAM_17460 b1543a0e0ee1894b00f6045e607340e7 311 SUPERFAMILY SSF55120 82 294 1.76E-48 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 RAM_43015 a8eebe796e84e8eec184a64288278897 403 Gene3D G3DSA:2.60.120.200 34 274 2.1E-83 T 13-10-2018 RAM_43015 a8eebe796e84e8eec184a64288278897 403 Pfam PF00652 Ricin-type beta-trefoil lectin domain 279 400 1.3E-29 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_43015 a8eebe796e84e8eec184a64288278897 403 SMART SM00458 279 403 7.2E-32 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_43015 a8eebe796e84e8eec184a64288278897 403 SUPERFAMILY SSF49899 30 270 6.73E-69 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily RAM_43015 a8eebe796e84e8eec184a64288278897 403 SUPERFAMILY SSF50370 277 402 9.18E-41 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_43015 a8eebe796e84e8eec184a64288278897 403 Gene3D G3DSA:2.80.10.50 275 403 1.4E-44 T 13-10-2018 RAM_43015 a8eebe796e84e8eec184a64288278897 403 Pfam PF00722 Glycosyl hydrolases family 16 67 266 1.3E-44 T 13-10-2018 IPR000757 Glycoside hydrolase family 16 GO:0004553|GO:0005975 RAM_43015 a8eebe796e84e8eec184a64288278897 403 PRINTS PR00737 Glycosyl hydrolase family 16 signature 111 129 2.6E-5 T 13-10-2018 IPR008264 Beta-glucanase GO:0004553|GO:0005975 RAM_43015 a8eebe796e84e8eec184a64288278897 403 PRINTS PR00737 Glycosyl hydrolase family 16 signature 187 204 2.6E-5 T 13-10-2018 IPR008264 Beta-glucanase GO:0004553|GO:0005975 RAM_43015 a8eebe796e84e8eec184a64288278897 403 PRINTS PR00737 Glycosyl hydrolase family 16 signature 207 224 2.6E-5 T 13-10-2018 IPR008264 Beta-glucanase GO:0004553|GO:0005975 RAM_26910 81b1855def2bdf901f5f3c1f83be64de 190 Gene3D G3DSA:3.60.15.10 3 188 7.0E-45 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_26910 81b1855def2bdf901f5f3c1f83be64de 190 SMART SM00849 12 167 6.6E-24 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_26910 81b1855def2bdf901f5f3c1f83be64de 190 SUPERFAMILY SSF56281 6 184 1.4E-39 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_26910 81b1855def2bdf901f5f3c1f83be64de 190 Pfam PF00753 Metallo-beta-lactamase superfamily 9 167 3.0E-20 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_44480 c44d8747eed0089fc14184533394d093 288 SUPERFAMILY SSF53474 3 258 6.23E-22 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_44480 c44d8747eed0089fc14184533394d093 288 Pfam PF12697 Alpha/beta hydrolase family 43 244 2.2E-7 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_44480 c44d8747eed0089fc14184533394d093 288 Gene3D G3DSA:3.40.50.1820 1 287 5.5E-33 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_03565 7e2184871ce0cdc9dbe8041657cfa80a 204 PIRSF PIRSF006324 1 204 7.2E-49 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RAM_03565 7e2184871ce0cdc9dbe8041657cfa80a 204 Pfam PF01810 LysE type translocator 10 202 1.4E-27 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RAM_31625 b22ebe01931ba98d16953416ca64be8a 154 Pfam PF00293 NUDIX domain 4 116 8.2E-18 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RAM_31625 b22ebe01931ba98d16953416ca64be8a 154 Gene3D G3DSA:3.90.79.10 2 141 8.0E-38 T 13-10-2018 RAM_31625 b22ebe01931ba98d16953416ca64be8a 154 PRINTS PR00502 NUDIX hydrolase family signature 33 47 1.0E-6 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RAM_31625 b22ebe01931ba98d16953416ca64be8a 154 PRINTS PR00502 NUDIX hydrolase family signature 47 62 1.0E-6 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RAM_31625 b22ebe01931ba98d16953416ca64be8a 154 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RAM_31625 b22ebe01931ba98d16953416ca64be8a 154 SUPERFAMILY SSF55811 6 140 2.03E-27 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RAM_45350 3334296ef49a7534ce2d4cfb37441160 52 Pfam PF13404 AsnC-type helix-turn-helix domain 7 38 9.4E-11 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_45350 3334296ef49a7534ce2d4cfb37441160 52 Gene3D G3DSA:1.10.10.10 6 39 1.5E-9 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_13355 7314bef37da5564f67d86e91c4bb5c78 511 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 3 29 4.7E-5 T 13-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal RAM_13355 7314bef37da5564f67d86e91c4bb5c78 511 SUPERFAMILY SSF89550 41 291 2.55E-19 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 RAM_13355 7314bef37da5564f67d86e91c4bb5c78 511 SMART SM00481 45 120 2.1E-6 T 13-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal RAM_34225 e7f378f6712f2dc6058e5fc01cdbfe57 346 SUPERFAMILY SSF53474 65 320 8.6E-39 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_34225 e7f378f6712f2dc6058e5fc01cdbfe57 346 Pfam PF12697 Alpha/beta hydrolase family 69 313 6.0E-21 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_34225 e7f378f6712f2dc6058e5fc01cdbfe57 346 Gene3D G3DSA:3.40.50.1820 22 321 8.0E-39 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_34225 e7f378f6712f2dc6058e5fc01cdbfe57 346 PRINTS PR00412 Epoxide hydrolase signature 296 318 9.3E-6 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_34225 e7f378f6712f2dc6058e5fc01cdbfe57 346 PRINTS PR00412 Epoxide hydrolase signature 93 108 9.3E-6 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_34225 e7f378f6712f2dc6058e5fc01cdbfe57 346 PRINTS PR00412 Epoxide hydrolase signature 73 91 9.3E-6 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_37295 7f5e71009eb2f7e14750ca7a5c48c044 682 SUPERFAMILY SSF51445 81 246 3.86E-8 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_37295 7f5e71009eb2f7e14750ca7a5c48c044 682 Pfam PF14871 Hypothetical glycosyl hydrolase 6 32 164 3.6E-26 T 13-10-2018 IPR028212 Hypothetical glycosyl hydrolase 6 RAM_37295 7f5e71009eb2f7e14750ca7a5c48c044 682 Gene3D G3DSA:3.20.20.80 74 193 2.8E-6 T 13-10-2018 RAM_37295 7f5e71009eb2f7e14750ca7a5c48c044 682 Gene3D G3DSA:3.40.50.880 358 586 8.5E-20 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_37295 7f5e71009eb2f7e14750ca7a5c48c044 682 SUPERFAMILY SSF52317 384 562 9.31E-10 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_18250 b821eefa38f877f6512a796be4f09603 122 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 3 102 2.3E-7 T 13-10-2018 IPR000014 PAS domain RAM_18250 b821eefa38f877f6512a796be4f09603 122 Gene3D G3DSA:3.30.450.20 5 110 1.5E-12 T 13-10-2018 RAM_18250 b821eefa38f877f6512a796be4f09603 122 Pfam PF08448 PAS fold 2 108 9.4E-10 T 13-10-2018 IPR013656 PAS fold-4 RAM_18250 b821eefa38f877f6512a796be4f09603 122 SUPERFAMILY SSF55785 2 102 5.06E-13 T 13-10-2018 IPR035965 PAS domain superfamily RAM_33575 534bf73843ba410125d3f937a160dd9a 234 Gene3D G3DSA:1.10.10.10 174 230 1.1E-10 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_33575 534bf73843ba410125d3f937a160dd9a 234 SUPERFAMILY SSF55781 24 169 1.18E-15 T 13-10-2018 RAM_33575 534bf73843ba410125d3f937a160dd9a 234 SMART SM01012 170 225 4.1E-22 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 RAM_33575 534bf73843ba410125d3f937a160dd9a 234 Pfam PF13185 GAF domain 21 155 4.8E-8 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_33575 534bf73843ba410125d3f937a160dd9a 234 Pfam PF03861 ANTAR domain 172 225 4.1E-20 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 RAM_33575 534bf73843ba410125d3f937a160dd9a 234 SUPERFAMILY SSF52172 156 224 2.78E-10 T 13-10-2018 IPR011006 CheY-like superfamily RAM_33575 534bf73843ba410125d3f937a160dd9a 234 PIRSF PIRSF036625 2 234 1.2E-50 T 13-10-2018 IPR012074 GAF-ANTAR transcription anti-termination regulator, putative RAM_33575 534bf73843ba410125d3f937a160dd9a 234 Gene3D G3DSA:3.30.450.40 3 173 2.4E-18 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_33575 534bf73843ba410125d3f937a160dd9a 234 SMART SM00065 25 168 6.5E-4 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_06880 f715dba12c5088d5440949c4124aa0c4 303 SMART SM00382 26 233 2.3E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_06880 f715dba12c5088d5440949c4124aa0c4 303 Pfam PF00005 ABC transporter 18 162 4.0E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_06880 f715dba12c5088d5440949c4124aa0c4 303 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_06880 f715dba12c5088d5440949c4124aa0c4 303 SUPERFAMILY SSF52540 2 225 1.46E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_06880 f715dba12c5088d5440949c4124aa0c4 303 Gene3D G3DSA:3.40.50.300 1 229 1.5E-57 T 13-10-2018 RAM_42855 e847870148675c277b3af9cd9cdac0bf 266 PRINTS PR00377 Inositol monophosphatase superfamily signature 37 57 6.2E-42 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RAM_42855 e847870148675c277b3af9cd9cdac0bf 266 PRINTS PR00377 Inositol monophosphatase superfamily signature 128 151 6.2E-42 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RAM_42855 e847870148675c277b3af9cd9cdac0bf 266 PRINTS PR00377 Inositol monophosphatase superfamily signature 209 233 6.2E-42 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RAM_42855 e847870148675c277b3af9cd9cdac0bf 266 PRINTS PR00377 Inositol monophosphatase superfamily signature 59 75 6.2E-42 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RAM_42855 e847870148675c277b3af9cd9cdac0bf 266 PRINTS PR00377 Inositol monophosphatase superfamily signature 178 199 6.2E-42 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RAM_42855 e847870148675c277b3af9cd9cdac0bf 266 PRINTS PR00377 Inositol monophosphatase superfamily signature 79 95 6.2E-42 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RAM_42855 e847870148675c277b3af9cd9cdac0bf 266 Pfam PF00459 Inositol monophosphatase family 7 247 9.3E-51 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RAM_42855 e847870148675c277b3af9cd9cdac0bf 266 Gene3D G3DSA:3.30.540.10 1 138 3.0E-38 T 13-10-2018 RAM_42855 e847870148675c277b3af9cd9cdac0bf 266 SUPERFAMILY SSF56655 6 259 4.32E-64 T 13-10-2018 RAM_42855 e847870148675c277b3af9cd9cdac0bf 266 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 79 92 - T 13-10-2018 IPR020583 Inositol monophosphatase, metal-binding site RAM_42855 e847870148675c277b3af9cd9cdac0bf 266 Gene3D G3DSA:3.40.190.80 140 263 1.3E-27 T 13-10-2018 RAM_34370 ad6ba08f2a048ee44a9123c86fafdb65 94 Pfam PF03992 Antibiotic biosynthesis monooxygenase 8 68 7.4E-14 T 13-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain RAM_34370 ad6ba08f2a048ee44a9123c86fafdb65 94 Gene3D G3DSA:3.30.70.100 2 93 2.4E-14 T 13-10-2018 RAM_34370 ad6ba08f2a048ee44a9123c86fafdb65 94 SUPERFAMILY SSF54909 2 84 4.98E-16 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_08780 c372299d10739d866270633b27baecf0 206 Hamap MF_02114 2-phospho-L-lactate guanylyltransferase [cofC]. 3 205 21.201 T 13-10-2018 IPR002835 2-phospho-L-lactate guanylyltransferase, CofC GO:0016779 KEGG: 00680+2.7.7.68|MetaCyc: PWY-5198 RAM_08780 c372299d10739d866270633b27baecf0 206 TIGRFAM TIGR03552 F420_cofC: 2-phospho-L-lactate guanylyltransferase 5 198 3.5E-42 T 13-10-2018 IPR002835 2-phospho-L-lactate guanylyltransferase, CofC GO:0016779 KEGG: 00680+2.7.7.68|MetaCyc: PWY-5198 RAM_08780 c372299d10739d866270633b27baecf0 206 Gene3D G3DSA:3.90.550.10 1 171 1.1E-39 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_08780 c372299d10739d866270633b27baecf0 206 SUPERFAMILY SSF53448 14 202 1.44E-26 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_08780 c372299d10739d866270633b27baecf0 206 Pfam PF01983 Guanylyl transferase CofC like 5 201 5.8E-8 T 13-10-2018 IPR002835 2-phospho-L-lactate guanylyltransferase, CofC GO:0016779 KEGG: 00680+2.7.7.68|MetaCyc: PWY-5198 RAM_06625 6cd6a8687f204832a78dc4c6567c842d 831 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 103 225 5.0E-12 T 13-10-2018 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_06625 6cd6a8687f204832a78dc4c6567c842d 831 SUPERFAMILY SSF51445 318 602 6.73E-62 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_06625 6cd6a8687f204832a78dc4c6567c842d 831 Pfam PF00703 Glycosyl hydrolases family 2 224 321 4.2E-9 T 13-10-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RAM_06625 6cd6a8687f204832a78dc4c6567c842d 831 SMART SM00560 689 821 8.0E-16 T 13-10-2018 IPR006558 LamG-like jellyroll fold RAM_06625 6cd6a8687f204832a78dc4c6567c842d 831 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 672 823 1.6E-29 T 13-10-2018 RAM_06625 6cd6a8687f204832a78dc4c6567c842d 831 Gene3D G3DSA:2.60.120.200 628 829 4.0E-41 T 13-10-2018 RAM_06625 6cd6a8687f204832a78dc4c6567c842d 831 SUPERFAMILY SSF49785 59 229 1.34E-44 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_06625 6cd6a8687f204832a78dc4c6567c842d 831 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 366 478 4.2E-5 T 13-10-2018 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 RAM_06625 6cd6a8687f204832a78dc4c6567c842d 831 SUPERFAMILY SSF49303 233 322 3.17E-11 T 13-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily RAM_06625 6cd6a8687f204832a78dc4c6567c842d 831 Gene3D G3DSA:2.60.40.10 232 322 1.4E-9 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_06625 6cd6a8687f204832a78dc4c6567c842d 831 Gene3D G3DSA:3.20.20.80 331 606 1.4E-47 T 13-10-2018 RAM_06625 6cd6a8687f204832a78dc4c6567c842d 831 SUPERFAMILY SSF49899 630 830 7.26E-41 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily RAM_06625 6cd6a8687f204832a78dc4c6567c842d 831 Gene3D G3DSA:2.60.120.260 63 229 2.1E-38 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_40415 ec600ad0750b4a71fb486479c64325c4 229 Hamap MF_00654 Pyrroloquinoline-quinone synthase [pqqC]. 1 229 93.507 T 13-10-2018 IPR011845 Coenzyme PQQ biosynthesis protein C GO:0018189|GO:0055114 MetaCyc: PWY-6420 RAM_40415 ec600ad0750b4a71fb486479c64325c4 229 Gene3D G3DSA:1.20.910.10 3 229 5.2E-62 T 13-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 RAM_40415 ec600ad0750b4a71fb486479c64325c4 229 SUPERFAMILY SSF48613 3 228 2.08E-58 T 13-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 RAM_40415 ec600ad0750b4a71fb486479c64325c4 229 Pfam PF03070 TENA/THI-4/PQQC family 15 222 1.4E-43 T 13-10-2018 IPR004305 Thiaminase-2/PQQC RAM_40415 ec600ad0750b4a71fb486479c64325c4 229 TIGRFAM TIGR02111 PQQ_syn_pqqC: coenzyme PQQ biosynthesis protein C 11 227 3.4E-82 T 13-10-2018 IPR011845 Coenzyme PQQ biosynthesis protein C GO:0018189|GO:0055114 MetaCyc: PWY-6420 RAM_17720 c7ed08860ed1ec26aa82be6d7f9d4de9 112 SUPERFAMILY SSF103481 7 104 6.02E-11 T 13-10-2018 RAM_17720 c7ed08860ed1ec26aa82be6d7f9d4de9 112 Gene3D G3DSA:1.10.3730.20 1 106 1.3E-21 T 13-10-2018 RAM_17720 c7ed08860ed1ec26aa82be6d7f9d4de9 112 Pfam PF00893 Small Multidrug Resistance protein 3 91 8.9E-13 T 13-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 RAM_26640 b231b6fbcc5012517425567c7a4ff057 411 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 216 401 2.3E-26 T 13-10-2018 IPR013830 SGNH hydrolase-type esterase domain RAM_26640 b231b6fbcc5012517425567c7a4ff057 411 Gene3D G3DSA:3.40.50.1110 196 410 8.5E-36 T 13-10-2018 IPR036514 SGNH hydrolase superfamily RAM_26640 b231b6fbcc5012517425567c7a4ff057 411 SUPERFAMILY SSF52266 212 406 4.33E-47 T 13-10-2018 RAM_34630 d24f387e16b9073cbf0e3fdd7d74fc38 200 Pfam PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) 12 165 2.5E-8 T 13-10-2018 IPR010550 Deoxycytidine triphosphate deaminase, bacterial GO:0008829|GO:0009394 RAM_34630 d24f387e16b9073cbf0e3fdd7d74fc38 200 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 14 192 9.0E-31 T 13-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 RAM_34630 d24f387e16b9073cbf0e3fdd7d74fc38 200 SUPERFAMILY SSF51283 13 192 1.44E-27 T 13-10-2018 IPR036157 dUTPase-like superfamily RAM_34630 d24f387e16b9073cbf0e3fdd7d74fc38 200 Gene3D G3DSA:2.70.40.10 14 197 2.8E-34 T 13-10-2018 IPR036157 dUTPase-like superfamily RAM_22475 d11f083b60de6a43b35c9c51b699cbd5 273 ProSitePatterns PS00221 MIP family signature. 68 76 - T 13-10-2018 IPR022357 Major intrinsic protein, conserved site Reactome: R-HSA-432047 RAM_22475 d11f083b60de6a43b35c9c51b699cbd5 273 TIGRFAM TIGR00861 MIP: MIP family channel proteins 16 247 4.5E-66 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RAM_22475 d11f083b60de6a43b35c9c51b699cbd5 273 Pfam PF00230 Major intrinsic protein 11 247 3.9E-55 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RAM_22475 d11f083b60de6a43b35c9c51b699cbd5 273 SUPERFAMILY SSF81338 12 253 1.02E-68 T 13-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 RAM_22475 d11f083b60de6a43b35c9c51b699cbd5 273 Gene3D G3DSA:1.20.1080.10 5 255 2.1E-86 T 13-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 RAM_22475 d11f083b60de6a43b35c9c51b699cbd5 273 PRINTS PR00783 Major intrinsic protein family signature 12 31 1.4E-48 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RAM_22475 d11f083b60de6a43b35c9c51b699cbd5 273 PRINTS PR00783 Major intrinsic protein family signature 50 74 1.4E-48 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RAM_22475 d11f083b60de6a43b35c9c51b699cbd5 273 PRINTS PR00783 Major intrinsic protein family signature 87 106 1.4E-48 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RAM_22475 d11f083b60de6a43b35c9c51b699cbd5 273 PRINTS PR00783 Major intrinsic protein family signature 181 203 1.4E-48 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RAM_22475 d11f083b60de6a43b35c9c51b699cbd5 273 PRINTS PR00783 Major intrinsic protein family signature 230 250 1.4E-48 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RAM_22475 d11f083b60de6a43b35c9c51b699cbd5 273 PRINTS PR00783 Major intrinsic protein family signature 148 166 1.4E-48 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RAM_33095 a9bdaeac9e135e3cf9698ef932257f29 197 SUPERFAMILY SSF48498 89 168 3.0E-5 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_33095 a9bdaeac9e135e3cf9698ef932257f29 197 Pfam PF00440 Bacterial regulatory proteins, tetR family 2 32 2.9E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_33095 a9bdaeac9e135e3cf9698ef932257f29 197 SUPERFAMILY SSF46689 2 48 9.23E-7 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_33095 a9bdaeac9e135e3cf9698ef932257f29 197 Gene3D G3DSA:1.10.357.10 1 194 1.2E-12 T 13-10-2018 RAM_26360 8775c0a688cdbca0e6e2765c7c9a2e96 468 SUPERFAMILY SSF51695 28 183 3.66E-15 T 13-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 RAM_26360 8775c0a688cdbca0e6e2765c7c9a2e96 468 Gene3D G3DSA:3.20.20.190 29 220 1.1E-19 T 13-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 RAM_32810 c1406bb62598b7d55804cecba5b98226 472 PRINTS PR00163 Rubredoxin signature 411 427 7.2E-5 T 13-10-2018 IPR024935 Rubredoxin domain GO:0005506 RAM_32810 c1406bb62598b7d55804cecba5b98226 472 PRINTS PR00163 Rubredoxin signature 441 457 7.2E-5 T 13-10-2018 IPR024935 Rubredoxin domain GO:0005506 RAM_32810 c1406bb62598b7d55804cecba5b98226 472 ProSitePatterns PS00202 Rubredoxin signature. 441 451 - T 13-10-2018 IPR018527 Rubredoxin, iron-binding site GO:0046872 RAM_32810 c1406bb62598b7d55804cecba5b98226 472 Gene3D G3DSA:2.20.28.10 413 462 1.2E-20 T 13-10-2018 RAM_32810 c1406bb62598b7d55804cecba5b98226 472 PIRSF PIRSF036487 1 466 1.7E-287 T 13-10-2018 IPR014607 Alkane 1-monooxygenase, rubredoxin-type RAM_32810 c1406bb62598b7d55804cecba5b98226 472 SUPERFAMILY SSF57802 413 455 1.45E-14 T 13-10-2018 RAM_32810 c1406bb62598b7d55804cecba5b98226 472 Pfam PF00301 Rubredoxin 413 458 5.7E-18 T 13-10-2018 IPR024935 Rubredoxin domain GO:0005506 RAM_32810 c1406bb62598b7d55804cecba5b98226 472 Pfam PF00487 Fatty acid desaturase 124 342 3.8E-32 T 13-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 RAM_33875 303804f1893cc71d009dc579f8efbbef 246 PIRSF PIRSF006648 2 244 3.1E-19 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 RAM_33875 303804f1893cc71d009dc579f8efbbef 246 Pfam PF01061 ABC-2 type transporter 8 207 1.7E-15 T 13-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 RAM_37315 3b4422b654973eb800768dba93a123c4 725 SUPERFAMILY SSF51445 27 175 5.69E-5 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_37315 3b4422b654973eb800768dba93a123c4 725 Gene3D G3DSA:3.20.20.80 61 373 8.3E-13 T 13-10-2018 RAM_37315 3b4422b654973eb800768dba93a123c4 725 Gene3D G3DSA:3.40.50.880 385 613 1.8E-21 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_37315 3b4422b654973eb800768dba93a123c4 725 Pfam PF08532 Beta-galactosidase trimerisation domain 388 499 6.7E-10 T 13-10-2018 IPR013738 Beta-galactosidase trimerisation GO:0004565|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_37315 3b4422b654973eb800768dba93a123c4 725 Pfam PF14871 Hypothetical glycosyl hydrolase 6 40 173 4.3E-15 T 13-10-2018 IPR028212 Hypothetical glycosyl hydrolase 6 RAM_37315 3b4422b654973eb800768dba93a123c4 725 SUPERFAMILY SSF52317 388 522 7.63E-8 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_13940 d8845d565020ebf4d33a4e5de651fe08 151 SUPERFAMILY SSF48013 15 140 3.79E-37 T 13-10-2018 IPR035926 NusB-like superfamily RAM_13940 d8845d565020ebf4d33a4e5de651fe08 151 Gene3D G3DSA:1.10.940.10 9 140 1.8E-41 T 13-10-2018 IPR035926 NusB-like superfamily RAM_13940 d8845d565020ebf4d33a4e5de651fe08 151 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 15 140 1.9E-38 T 13-10-2018 IPR011605 NusB antitermination factor GO:0006353 RAM_13940 d8845d565020ebf4d33a4e5de651fe08 151 Hamap MF_00073 Transcription antitermination protein NusB [nusB]. 14 145 22.2 T 13-10-2018 IPR011605 NusB antitermination factor GO:0006353 RAM_13940 d8845d565020ebf4d33a4e5de651fe08 151 Pfam PF01029 NusB family 17 140 3.9E-33 T 13-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 RAM_42105 449d83687c43f8a71dd03ce7f543b831 183 Pfam PF04977 Septum formation initiator 74 148 1.6E-17 T 13-10-2018 IPR007060 Septum formation initiator FtsL/DivIC RAM_37380 6426d21dc380051630a1123bf2af1b38 453 Gene3D G3DSA:1.20.1250.20 30 452 4.0E-71 T 13-10-2018 RAM_37380 6426d21dc380051630a1123bf2af1b38 453 SUPERFAMILY SSF103473 31 451 4.32E-80 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_37380 6426d21dc380051630a1123bf2af1b38 453 Pfam PF07690 Major Facilitator Superfamily 50 389 5.2E-40 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_40035 5c4ba85ac6313fbd4a7b2c700662daec 353 PIRSF PIRSF038945 1 352 1.0E-165 T 13-10-2018 IPR026260 Threonine synthase, bacterial/archaeal GO:0004795|GO:0009088 KEGG: 00260+4.2.3.1|KEGG: 00750+4.2.3.1 RAM_40035 5c4ba85ac6313fbd4a7b2c700662daec 353 SUPERFAMILY SSF53686 4 330 4.98E-102 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RAM_40035 5c4ba85ac6313fbd4a7b2c700662daec 353 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 26 320 1.3E-73 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RAM_40035 5c4ba85ac6313fbd4a7b2c700662daec 353 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 54 67 - T 13-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 RAM_40035 5c4ba85ac6313fbd4a7b2c700662daec 353 TIGRFAM TIGR00260 thrC: threonine synthase 10 326 2.6E-91 T 13-10-2018 IPR004450 Threonine synthase-like RAM_40035 5c4ba85ac6313fbd4a7b2c700662daec 353 Gene3D G3DSA:3.40.50.1100 62 158 3.1E-125 T 13-10-2018 RAM_40035 5c4ba85ac6313fbd4a7b2c700662daec 353 Gene3D G3DSA:3.40.50.1100 18 326 3.1E-125 T 13-10-2018 RAM_20285 a26096ca367f8cd6881fdec57828c0e7 334 Pfam PF07582 AP endonuclease family 2 C terminus 275 329 1.0E-23 T 13-10-2018 IPR011418 AP endonuclease, family 2, C-terminal RAM_20285 a26096ca367f8cd6881fdec57828c0e7 334 Gene3D G3DSA:3.20.20.150 2 323 1.6E-99 T 13-10-2018 RAM_20285 a26096ca367f8cd6881fdec57828c0e7 334 SUPERFAMILY SSF51658 8 318 2.36E-59 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily RAM_20285 a26096ca367f8cd6881fdec57828c0e7 334 Pfam PF01261 Xylose isomerase-like TIM barrel 22 274 9.0E-37 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain RAM_46830 ce66aeab2343f6bf2e2f976c1cabf383 224 Pfam PF09335 SNARE associated Golgi protein 44 171 1.7E-21 T 13-10-2018 IPR032816 SNARE associated Golgi protein RAM_31035 35fa13fcd57d1d524cbdbe033ef8ac78 217 SUPERFAMILY SSF55315 3 54 2.47E-6 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like RAM_31035 35fa13fcd57d1d524cbdbe033ef8ac78 217 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 1 54 4.3E-7 T 13-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 RAM_31035 35fa13fcd57d1d524cbdbe033ef8ac78 217 Gene3D G3DSA:3.40.1280.10 59 216 2.0E-51 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RAM_31035 35fa13fcd57d1d524cbdbe033ef8ac78 217 SUPERFAMILY SSF75217 46 211 4.19E-44 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases RAM_31035 35fa13fcd57d1d524cbdbe033ef8ac78 217 Pfam PF00588 SpoU rRNA Methylase family 69 209 2.3E-39 T 13-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 RAM_38800 5f58171ffac9087a08e5c14cc4745ee2 845 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 380 399 3.1E-7 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAM_38800 5f58171ffac9087a08e5c14cc4745ee2 845 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 112 134 3.1E-7 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAM_38800 5f58171ffac9087a08e5c14cc4745ee2 845 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 230 254 3.1E-7 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAM_38800 5f58171ffac9087a08e5c14cc4745ee2 845 Pfam PF01571 Aminomethyltransferase folate-binding domain 465 726 1.7E-67 T 13-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain RAM_38800 5f58171ffac9087a08e5c14cc4745ee2 845 Gene3D G3DSA:3.50.50.60 111 201 5.0E-10 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_38800 5f58171ffac9087a08e5c14cc4745ee2 845 Gene3D G3DSA:3.50.50.60 202 263 5.0E-10 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_38800 5f58171ffac9087a08e5c14cc4745ee2 845 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 8 87 4.1E-22 T 13-10-2018 RAM_38800 5f58171ffac9087a08e5c14cc4745ee2 845 Gene3D G3DSA:3.10.20.440 1 67 7.0E-6 T 13-10-2018 RAM_38800 5f58171ffac9087a08e5c14cc4745ee2 845 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 733 832 8.2E-16 T 13-10-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RAM_38800 5f58171ffac9087a08e5c14cc4745ee2 845 SUPERFAMILY SSF51905 110 262 2.73E-21 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_38800 5f58171ffac9087a08e5c14cc4745ee2 845 Gene3D G3DSA:3.30.1360.120 453 835 2.9E-96 T 13-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RAM_38800 5f58171ffac9087a08e5c14cc4745ee2 845 SUPERFAMILY SSF103025 458 745 7.22E-91 T 13-10-2018 RAM_38800 5f58171ffac9087a08e5c14cc4745ee2 845 SUPERFAMILY SSF101790 746 842 1.03E-14 T 13-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal RAM_09760 1d6f280fe4e65c8cde335de0430d4650 186 SUPERFAMILY SSF46689 2 53 2.21E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_09760 1d6f280fe4e65c8cde335de0430d4650 186 SUPERFAMILY SSF48498 68 170 1.14E-18 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_09760 1d6f280fe4e65c8cde335de0430d4650 186 Pfam PF00440 Bacterial regulatory proteins, tetR family 1 47 1.1E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_09760 1d6f280fe4e65c8cde335de0430d4650 186 Gene3D G3DSA:1.10.357.10 1 177 3.3E-43 T 13-10-2018 RAM_11080 59b44285f74e1639d0444af1b46d5c77 499 Gene3D G3DSA:3.40.630.10 163 498 3.6E-127 T 13-10-2018 RAM_11080 59b44285f74e1639d0444af1b46d5c77 499 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 29 146 6.1E-24 T 13-10-2018 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 RAM_11080 59b44285f74e1639d0444af1b46d5c77 499 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 9 497 33.563 T 13-10-2018 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 RAM_11080 59b44285f74e1639d0444af1b46d5c77 499 PRINTS PR00481 Cytosol aminopeptidase signature 280 301 1.0E-46 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RAM_11080 59b44285f74e1639d0444af1b46d5c77 499 PRINTS PR00481 Cytosol aminopeptidase signature 339 359 1.0E-46 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RAM_11080 59b44285f74e1639d0444af1b46d5c77 499 PRINTS PR00481 Cytosol aminopeptidase signature 367 382 1.0E-46 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RAM_11080 59b44285f74e1639d0444af1b46d5c77 499 PRINTS PR00481 Cytosol aminopeptidase signature 258 275 1.0E-46 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RAM_11080 59b44285f74e1639d0444af1b46d5c77 499 PRINTS PR00481 Cytosol aminopeptidase signature 317 338 1.0E-46 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RAM_11080 59b44285f74e1639d0444af1b46d5c77 499 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 343 350 - T 13-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 RAM_11080 59b44285f74e1639d0444af1b46d5c77 499 SUPERFAMILY SSF52949 22 162 7.65E-27 T 13-10-2018 RAM_11080 59b44285f74e1639d0444af1b46d5c77 499 Gene3D G3DSA:3.40.220.10 10 154 4.5E-28 T 13-10-2018 RAM_11080 59b44285f74e1639d0444af1b46d5c77 499 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 183 488 1.4E-113 T 13-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 RAM_11080 59b44285f74e1639d0444af1b46d5c77 499 SUPERFAMILY SSF53187 177 494 4.71E-105 T 13-10-2018 RAM_43590 95721023901e4e34244bd91c3d998764 194 SUPERFAMILY SSF46689 5 84 4.19E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_43590 95721023901e4e34244bd91c3d998764 194 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 62 1.9E-12 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_43590 95721023901e4e34244bd91c3d998764 194 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 1.1E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_43590 95721023901e4e34244bd91c3d998764 194 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 1.1E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_43590 95721023901e4e34244bd91c3d998764 194 Gene3D G3DSA:1.10.357.10 4 191 1.4E-21 T 13-10-2018 RAM_27700 835aeed196437da7a68344faebf7d49e 392 Gene3D G3DSA:3.40.47.10 249 392 2.2E-41 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_27700 835aeed196437da7a68344faebf7d49e 392 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 1 234 4.2E-36 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal RAM_27700 835aeed196437da7a68344faebf7d49e 392 SUPERFAMILY SSF53901 206 391 3.39E-46 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_27700 835aeed196437da7a68344faebf7d49e 392 SUPERFAMILY SSF53901 1 239 9.05E-52 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_27700 835aeed196437da7a68344faebf7d49e 392 SMART SM00825 Beta-ketoacyl synthase 1 391 2.1E-5 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RAM_27700 835aeed196437da7a68344faebf7d49e 392 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 244 353 4.4E-21 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal RAM_27700 835aeed196437da7a68344faebf7d49e 392 Gene3D G3DSA:3.40.47.10 1 248 8.0E-52 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_20770 ae0f57887bc0f1e5d85190f148b58650 367 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 245 257 - T 13-10-2018 IPR033749 Polyprenyl synthetase, conserved site RAM_20770 ae0f57887bc0f1e5d85190f148b58650 367 Pfam PF00348 Polyprenyl synthetase 57 313 3.4E-46 T 13-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 RAM_20770 ae0f57887bc0f1e5d85190f148b58650 367 SUPERFAMILY SSF48576 51 366 2.52E-68 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily RAM_20770 ae0f57887bc0f1e5d85190f148b58650 367 Gene3D G3DSA:1.10.600.10 17 367 1.2E-96 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily RAM_20770 ae0f57887bc0f1e5d85190f148b58650 367 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 101 115 - T 13-10-2018 IPR033749 Polyprenyl synthetase, conserved site RAM_08535 c423345fce353d2b9a5f5f3623b24991 402 SUPERFAMILY SSF63829 96 322 9.81E-12 T 13-10-2018 RAM_08535 c423345fce353d2b9a5f5f3623b24991 402 Pfam PF07995 Glucose / Sorbosone dehydrogenase 109 286 6.3E-18 T 13-10-2018 IPR012938 Glucose/Sorbosone dehydrogenase RAM_08535 c423345fce353d2b9a5f5f3623b24991 402 Gene3D G3DSA:2.120.10.30 61 392 2.6E-40 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RAM_25915 e8f1685a64565a82f9b9852dabbd4894 235 SUPERFAMILY SSF51735 1 223 1.14E-67 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_25915 e8f1685a64565a82f9b9852dabbd4894 235 Gene3D G3DSA:3.40.50.720 1 232 3.1E-68 T 13-10-2018 RAM_25915 e8f1685a64565a82f9b9852dabbd4894 235 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 149 7.8E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_25915 e8f1685a64565a82f9b9852dabbd4894 235 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 111 119 7.8E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_25915 e8f1685a64565a82f9b9852dabbd4894 235 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 60 71 7.8E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_25915 e8f1685a64565a82f9b9852dabbd4894 235 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 5 221 8.9E-56 T 13-10-2018 RAM_25915 e8f1685a64565a82f9b9852dabbd4894 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 60 71 1.5E-28 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_25915 e8f1685a64565a82f9b9852dabbd4894 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 168 1.5E-28 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_25915 e8f1685a64565a82f9b9852dabbd4894 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 184 204 1.5E-28 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_25915 e8f1685a64565a82f9b9852dabbd4894 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 105 121 1.5E-28 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_25915 e8f1685a64565a82f9b9852dabbd4894 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 149 1.5E-28 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_30565 2ada22abadd3cdf084d38870ed225980 199 Gene3D G3DSA:3.20.80.10 1 199 9.9E-75 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily RAM_30565 2ada22abadd3cdf084d38870ed225980 199 PIRSF PIRSF031644 1 199 4.9E-60 T 13-10-2018 IPR008319 Uncharacterised conserved protein UCP031644 RAM_30565 2ada22abadd3cdf084d38870ed225980 199 Pfam PF06445 GyrI-like small molecule binding domain 22 195 9.7E-29 T 13-10-2018 IPR029442 GyrI-like small molecule binding domain RAM_30565 2ada22abadd3cdf084d38870ed225980 199 SUPERFAMILY SSF55136 123 191 3.4E-10 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily RAM_22850 d215cc9f0786bf7e581e535b54f0af2f 404 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 5 65 7.6E-8 T 13-10-2018 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RAM_22850 d215cc9f0786bf7e581e535b54f0af2f 404 SUPERFAMILY SSF53756 5 401 2.55E-85 T 13-10-2018 RAM_22850 d215cc9f0786bf7e581e535b54f0af2f 404 Gene3D G3DSA:3.40.50.2000 227 388 4.0E-107 T 13-10-2018 RAM_22850 d215cc9f0786bf7e581e535b54f0af2f 404 Gene3D G3DSA:3.40.50.2000 5 390 4.0E-107 T 13-10-2018 RAM_24515 e7538c430fe5da2f92b779cdf6208875 331 Pfam PF10282 Lactonase, 7-bladed beta-propeller 119 272 9.7E-7 T 13-10-2018 IPR019405 Lactonase, 7-bladed beta propeller RAM_24515 e7538c430fe5da2f92b779cdf6208875 331 Gene3D G3DSA:2.130.10.10 128 230 2.9E-34 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RAM_24515 e7538c430fe5da2f92b779cdf6208875 331 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 126 160 2.0E-12 T 13-10-2018 IPR011964 YVTN beta-propeller repeat RAM_24515 e7538c430fe5da2f92b779cdf6208875 331 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 47 81 3.1E-8 T 13-10-2018 IPR011964 YVTN beta-propeller repeat RAM_24515 e7538c430fe5da2f92b779cdf6208875 331 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 289 330 2.8E-14 T 13-10-2018 IPR011964 YVTN beta-propeller repeat RAM_24515 e7538c430fe5da2f92b779cdf6208875 331 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 167 207 1.5E-13 T 13-10-2018 IPR011964 YVTN beta-propeller repeat RAM_24515 e7538c430fe5da2f92b779cdf6208875 331 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 85 125 6.8E-17 T 13-10-2018 IPR011964 YVTN beta-propeller repeat RAM_24515 e7538c430fe5da2f92b779cdf6208875 331 Gene3D G3DSA:2.130.10.10 233 331 3.4E-20 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RAM_24515 e7538c430fe5da2f92b779cdf6208875 331 Gene3D G3DSA:2.130.10.10 22 127 2.5E-24 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RAM_24515 e7538c430fe5da2f92b779cdf6208875 331 SUPERFAMILY SSF51004 37 325 6.8E-63 T 13-10-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily RAM_04705 7399f0dd24f119a5381d456e1caa560e 215 Gene3D G3DSA:2.40.260.10 59 215 1.9E-26 T 13-10-2018 IPR023365 Sortase domain superfamily RAM_04705 7399f0dd24f119a5381d456e1caa560e 215 SUPERFAMILY SSF63817 65 213 1.31E-16 T 13-10-2018 IPR023365 Sortase domain superfamily RAM_04705 7399f0dd24f119a5381d456e1caa560e 215 Pfam PF04203 Sortase family 72 213 1.1E-18 T 13-10-2018 IPR005754 Sortase family RAM_28535 05c453ff3988d69921929ee068ecff6b 56 Gene3D G3DSA:3.40.50.920 1 56 7.4E-8 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RAM_28535 05c453ff3988d69921929ee068ecff6b 56 Pfam PF09363 XFP C-terminal domain 1 54 2.8E-6 T 13-10-2018 IPR018969 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, C-terminal GO:0005975|GO:0016832 RAM_10600 b4b12e0fea41a056e924f31d0c8be741 433 Pfam PF07730 Histidine kinase 247 313 2.4E-11 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_10600 b4b12e0fea41a056e924f31d0c8be741 433 Pfam PF13796 Putative sensor 42 219 1.9E-26 T 13-10-2018 IPR025828 Putative sensor domain RAM_10600 b4b12e0fea41a056e924f31d0c8be741 433 SUPERFAMILY SSF55874 326 431 6.02E-11 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_10600 b4b12e0fea41a056e924f31d0c8be741 433 Gene3D G3DSA:3.30.565.10 311 431 3.9E-19 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_46160 bbe101c8291feb8e301e24f58fca34d6 224 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 55 212 3.7E-39 T 13-10-2018 IPR000160 GGDEF domain RAM_46160 bbe101c8291feb8e301e24f58fca34d6 224 SUPERFAMILY SSF55073 60 213 1.26E-43 T 13-10-2018 IPR029787 Nucleotide cyclase RAM_46160 bbe101c8291feb8e301e24f58fca34d6 224 Pfam PF00990 Diguanylate cyclase, GGDEF domain 56 208 2.8E-35 T 13-10-2018 IPR000160 GGDEF domain RAM_46160 bbe101c8291feb8e301e24f58fca34d6 224 SMART SM00267 37 212 2.1E-42 T 13-10-2018 IPR000160 GGDEF domain RAM_46160 bbe101c8291feb8e301e24f58fca34d6 224 Gene3D G3DSA:3.30.70.270 51 217 1.9E-48 T 13-10-2018 RAM_03005 435dfefc6651039a35442bcf912fa30e 147 Pfam PF13452 N-terminal half of MaoC dehydratase 5 135 2.8E-34 T 13-10-2018 IPR039569 N-terminal of MaoC-like dehydratase Reactome: R-HSA-193368|Reactome: R-HSA-2046106|Reactome: R-HSA-389887|Reactome: R-HSA-390247|Reactome: R-HSA-9033241|Reactome: R-HSA-9033500 RAM_03005 435dfefc6651039a35442bcf912fa30e 147 PIRSF PIRSF018072 1 147 5.6E-56 T 13-10-2018 IPR016709 Uncharacterised protein family UPF0336 RAM_03005 435dfefc6651039a35442bcf912fa30e 147 SUPERFAMILY SSF54637 6 145 2.54E-38 T 13-10-2018 IPR029069 HotDog domain superfamily RAM_03005 435dfefc6651039a35442bcf912fa30e 147 Hamap MF_00799 UPF0336 protein . 1 146 29.881 T 13-10-2018 IPR016709 Uncharacterised protein family UPF0336 RAM_03005 435dfefc6651039a35442bcf912fa30e 147 Gene3D G3DSA:3.10.129.10 1 147 6.4E-49 T 13-10-2018 RAM_39540 64536b6db47f50507c81bbc6c3db9aa9 360 SUPERFAMILY SSF51430 6 318 1.44E-92 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_39540 64536b6db47f50507c81bbc6c3db9aa9 360 Pfam PF00248 Aldo/keto reductase family 20 317 2.4E-66 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain RAM_39540 64536b6db47f50507c81bbc6c3db9aa9 360 Gene3D G3DSA:3.20.20.100 5 337 2.2E-109 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_09385 1bc8f4c76e84d4068ed6823c32c733f1 373 TIGRFAM TIGR00045 TIGR00045: glycerate kinase 3 370 2.0E-108 T 13-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 RAM_09385 1bc8f4c76e84d4068ed6823c32c733f1 373 SUPERFAMILY SSF110738 3 370 2.09E-106 T 13-10-2018 IPR036129 Glycerate kinase superfamily GO:0008887|GO:0031388 RAM_09385 1bc8f4c76e84d4068ed6823c32c733f1 373 Gene3D G3DSA:3.90.1510.10 43 273 1.1E-112 T 13-10-2018 IPR018193 Glycerate kinase, flavodoxin-like fold GO:0008887|GO:0031388 RAM_09385 1bc8f4c76e84d4068ed6823c32c733f1 373 PIRSF PIRSF006078 2 373 2.3E-114 T 13-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 RAM_09385 1bc8f4c76e84d4068ed6823c32c733f1 373 Pfam PF02595 Glycerate kinase family 4 370 1.0E-116 T 13-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 RAM_09385 1bc8f4c76e84d4068ed6823c32c733f1 373 Gene3D G3DSA:3.40.50.10350 3 359 1.1E-112 T 13-10-2018 IPR018197 Glycerate kinase, restriction-enzyme-like fold RAM_20625 e2aeace083b8221abf33e272f34eea58 81 SUPERFAMILY SSF81333 17 78 4.45E-15 T 13-10-2018 IPR035921 F/V-ATP synthase subunit C superfamily RAM_20625 e2aeace083b8221abf33e272f34eea58 81 Hamap MF_01396 ATP synthase subunit c [atpH]. 14 79 13.015 T 13-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RAM_20625 e2aeace083b8221abf33e272f34eea58 81 PRINTS PR00124 ATP synthase C subunit signature 16 35 2.4E-13 T 13-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RAM_20625 e2aeace083b8221abf33e272f34eea58 81 PRINTS PR00124 ATP synthase C subunit signature 37 52 2.4E-13 T 13-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RAM_20625 e2aeace083b8221abf33e272f34eea58 81 PRINTS PR00124 ATP synthase C subunit signature 54 79 2.4E-13 T 13-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RAM_20625 e2aeace083b8221abf33e272f34eea58 81 Gene3D G3DSA:1.20.20.10 14 81 2.9E-17 T 13-10-2018 IPR038662 F1F0 ATP synthase subunit C superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RAM_20625 e2aeace083b8221abf33e272f34eea58 81 Pfam PF00137 ATP synthase subunit C 17 77 1.5E-10 T 13-10-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 RAM_12055 669a03bd62b12089c02ead058f2ec1ba 615 SUPERFAMILY SSF51126 435 549 2.51E-8 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor RAM_12055 669a03bd62b12089c02ead058f2ec1ba 615 Gene3D G3DSA:1.20.144.10 137 340 5.8E-38 T 13-10-2018 RAM_12055 669a03bd62b12089c02ead058f2ec1ba 615 SUPERFAMILY SSF48317 180 330 1.31E-22 T 13-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily RAM_12055 669a03bd62b12089c02ead058f2ec1ba 615 Pfam PF01569 PAP2 superfamily 191 318 5.6E-10 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RAM_12055 669a03bd62b12089c02ead058f2ec1ba 615 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 474 504 2.7E-12 T 13-10-2018 IPR013425 Autotransporter-associated beta strand repeat RAM_12055 669a03bd62b12089c02ead058f2ec1ba 615 Pfam PF12951 Passenger-associated-transport-repeat 475 503 4.9E-12 T 13-10-2018 IPR013425 Autotransporter-associated beta strand repeat RAM_12055 669a03bd62b12089c02ead058f2ec1ba 615 SMART SM00014 177 316 0.0025 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RAM_46970 d5b88081e488c91367cdfef3fc48db60 370 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 246 265 1.1E-5 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RAM_46970 d5b88081e488c91367cdfef3fc48db60 370 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 168 178 1.1E-5 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RAM_46970 d5b88081e488c91367cdfef3fc48db60 370 Gene3D G3DSA:2.40.30.10 136 233 1.6E-21 T 13-10-2018 RAM_46970 d5b88081e488c91367cdfef3fc48db60 370 Gene3D G3DSA:1.10.490.10 2 135 6.5E-35 T 13-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 RAM_46970 d5b88081e488c91367cdfef3fc48db60 370 Pfam PF00970 Oxidoreductase FAD-binding domain 143 235 2.6E-13 T 13-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 RAM_46970 d5b88081e488c91367cdfef3fc48db60 370 Gene3D G3DSA:3.40.50.80 239 369 3.6E-25 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RAM_46970 d5b88081e488c91367cdfef3fc48db60 370 PRINTS PR00410 Phenol hydroxylase reductase family signature 168 180 2.7E-9 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RAM_46970 d5b88081e488c91367cdfef3fc48db60 370 PRINTS PR00410 Phenol hydroxylase reductase family signature 246 265 2.7E-9 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RAM_46970 d5b88081e488c91367cdfef3fc48db60 370 Pfam PF00175 Oxidoreductase NAD-binding domain 247 348 2.1E-15 T 13-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 RAM_46970 d5b88081e488c91367cdfef3fc48db60 370 SUPERFAMILY SSF52343 239 368 3.8E-27 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RAM_46970 d5b88081e488c91367cdfef3fc48db60 370 SUPERFAMILY SSF63380 141 235 1.31E-23 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RAM_46970 d5b88081e488c91367cdfef3fc48db60 370 Pfam PF00042 Globin 6 98 2.9E-10 T 13-10-2018 IPR000971 Globin GO:0020037 RAM_46970 d5b88081e488c91367cdfef3fc48db60 370 SUPERFAMILY SSF46458 6 131 1.58E-32 T 13-10-2018 IPR009050 Globin-like superfamily RAM_18425 4a9fea019b56b86a712875905fb71700 397 Pfam PF00196 Bacterial regulatory proteins, luxR family 337 391 2.8E-17 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_18425 4a9fea019b56b86a712875905fb71700 397 SUPERFAMILY SSF52540 9 228 9.16E-12 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_18425 4a9fea019b56b86a712875905fb71700 397 Gene3D G3DSA:1.10.10.10 272 397 2.4E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_18425 4a9fea019b56b86a712875905fb71700 397 Pfam PF13191 AAA ATPase domain 13 150 1.1E-17 T 13-10-2018 RAM_18425 4a9fea019b56b86a712875905fb71700 397 ProSitePatterns PS00622 LuxR-type HTH domain signature. 352 379 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_18425 4a9fea019b56b86a712875905fb71700 397 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 352 368 6.7E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_18425 4a9fea019b56b86a712875905fb71700 397 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 368 380 6.7E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_18425 4a9fea019b56b86a712875905fb71700 397 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 338 352 6.7E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_18425 4a9fea019b56b86a712875905fb71700 397 SMART SM00421 335 392 1.9E-23 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_18425 4a9fea019b56b86a712875905fb71700 397 SUPERFAMILY SSF46894 324 393 1.8E-19 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_18410 a0db51e59ee27804946ff01c2f9161d1 320 Pfam PF01471 Putative peptidoglycan binding domain 158 209 4.0E-8 T 13-10-2018 IPR002477 Peptidoglycan binding-like RAM_18410 a0db51e59ee27804946ff01c2f9161d1 320 Gene3D G3DSA:1.10.101.10 144 219 1.4E-13 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 RAM_18410 a0db51e59ee27804946ff01c2f9161d1 320 SUPERFAMILY SSF53955 226 308 1.35E-8 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily RAM_18410 a0db51e59ee27804946ff01c2f9161d1 320 Pfam PF13560 Helix-turn-helix domain 8 70 6.9E-8 T 13-10-2018 RAM_18410 a0db51e59ee27804946ff01c2f9161d1 320 SUPERFAMILY SSF47090 146 210 4.24E-13 T 13-10-2018 IPR036365 PGBD-like superfamily RAM_12605 f8ec061e8cdc50a002ed2205a7a6d25a 378 Gene3D G3DSA:3.30.1540.10 218 306 5.1E-117 T 13-10-2018 RAM_12605 f8ec061e8cdc50a002ed2205a7a6d25a 378 Gene3D G3DSA:3.40.50.10540 5 324 5.1E-117 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily RAM_12605 f8ec061e8cdc50a002ed2205a7a6d25a 378 Pfam PF02515 CoA-transferase family III 6 350 1.5E-77 T 13-10-2018 IPR003673 CoA-transferase family III GO:0003824 RAM_12605 f8ec061e8cdc50a002ed2205a7a6d25a 378 SUPERFAMILY SSF89796 4 377 3.01E-114 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily RAM_22285 286ffe71a19bdee8fb8333c00c8f88bd 205 Gene3D G3DSA:1.10.1740.10 16 108 1.6E-12 T 13-10-2018 RAM_22285 286ffe71a19bdee8fb8333c00c8f88bd 205 SUPERFAMILY SSF88659 124 199 3.36E-12 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_22285 286ffe71a19bdee8fb8333c00c8f88bd 205 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 36 196 2.5E-19 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_22285 286ffe71a19bdee8fb8333c00c8f88bd 205 Pfam PF04542 Sigma-70 region 2 39 109 4.3E-9 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_22285 286ffe71a19bdee8fb8333c00c8f88bd 205 Pfam PF04545 Sigma-70, region 4 145 195 8.3E-10 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 RAM_22285 286ffe71a19bdee8fb8333c00c8f88bd 205 SUPERFAMILY SSF88946 20 119 2.83E-16 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_22285 286ffe71a19bdee8fb8333c00c8f88bd 205 Gene3D G3DSA:1.10.10.10 143 202 2.6E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_27035 b668b9088fc5ac38c86db369547d22b7 205 Pfam PF03591 AzlC protein 1 130 5.3E-34 T 13-10-2018 IPR011606 Branched-chain amino acid transport, permease RAM_39425 72fdc2f249608f4fee62a8acb35d034f 172 SUPERFAMILY SSF52949 1 167 8.92E-52 T 13-10-2018 RAM_39425 72fdc2f249608f4fee62a8acb35d034f 172 SMART SM00506 2 136 6.7E-45 T 13-10-2018 IPR002589 Macro domain RAM_39425 72fdc2f249608f4fee62a8acb35d034f 172 Gene3D G3DSA:3.40.220.10 1 170 1.3E-59 T 13-10-2018 RAM_39425 72fdc2f249608f4fee62a8acb35d034f 172 Pfam PF01661 Macro domain 19 136 7.0E-40 T 13-10-2018 IPR002589 Macro domain RAM_14480 fba1705e69c8dfdc91c924cb04ee4406 389 Gene3D G3DSA:3.40.50.300 2 380 1.8E-147 T 13-10-2018 RAM_14480 fba1705e69c8dfdc91c924cb04ee4406 389 Pfam PF13469 Sulfotransferase family 89 336 8.5E-58 T 13-10-2018 RAM_14480 fba1705e69c8dfdc91c924cb04ee4406 389 SUPERFAMILY SSF52540 58 362 5.94E-34 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_06675 71511ebbb0326af452bb19090d03de32 290 Gene3D G3DSA:3.30.200.20 8 86 4.5E-7 T 13-10-2018 RAM_06675 71511ebbb0326af452bb19090d03de32 290 Pfam PF01636 Phosphotransferase enzyme family 19 247 5.3E-25 T 13-10-2018 IPR002575 Aminoglycoside phosphotransferase RAM_06675 71511ebbb0326af452bb19090d03de32 290 Gene3D G3DSA:3.90.1200.10 101 274 8.6E-25 T 13-10-2018 RAM_06675 71511ebbb0326af452bb19090d03de32 290 SUPERFAMILY SSF56112 17 254 2.83E-31 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_33350 f401767d07af4f288d36b643ec970caf 308 Gene3D G3DSA:3.40.50.300 1 232 6.6E-54 T 13-10-2018 RAM_33350 f401767d07af4f288d36b643ec970caf 308 SMART SM00382 26 229 3.7E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_33350 f401767d07af4f288d36b643ec970caf 308 SUPERFAMILY SSF52540 2 223 2.51E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_33350 f401767d07af4f288d36b643ec970caf 308 Pfam PF00005 ABC transporter 18 156 1.4E-24 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_07845 595d7436e5f35305d6c6eee29fba6af1 274 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 130 152 4.6E-5 T 13-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) RAM_07845 595d7436e5f35305d6c6eee29fba6af1 274 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 190 207 4.6E-5 T 13-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) RAM_07845 595d7436e5f35305d6c6eee29fba6af1 274 SUPERFAMILY SSF63829 6 247 2.18E-39 T 13-10-2018 RAM_07845 595d7436e5f35305d6c6eee29fba6af1 274 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 13 244 9.0E-40 T 13-10-2018 IPR013658 SMP-30/Gluconolactonase/LRE-like region RAM_07845 595d7436e5f35305d6c6eee29fba6af1 274 Gene3D G3DSA:2.120.10.30 1 249 2.9E-37 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RAM_25620 02a052c91cc963c42fe428dc54f2901a 341 SUPERFAMILY SSF53807 47 312 4.32E-31 T 13-10-2018 RAM_25620 02a052c91cc963c42fe428dc54f2901a 341 Gene3D G3DSA:3.40.50.1980 192 335 2.0E-50 T 13-10-2018 RAM_25620 02a052c91cc963c42fe428dc54f2901a 341 Pfam PF01497 Periplasmic binding protein 67 310 2.7E-17 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain RAM_25620 02a052c91cc963c42fe428dc54f2901a 341 Gene3D G3DSA:3.40.50.1980 45 184 1.1E-47 T 13-10-2018 RAM_08015 48a4617b21510b2f4a6a4381b17a9da3 395 ProSitePatterns PS00737 Thiolases signature 2. 339 355 - T 13-10-2018 IPR020613 Thiolase, conserved site GO:0016747 RAM_08015 48a4617b21510b2f4a6a4381b17a9da3 395 SUPERFAMILY SSF53901 5 270 8.76E-86 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_08015 48a4617b21510b2f4a6a4381b17a9da3 395 Pfam PF00108 Thiolase, N-terminal domain 5 262 2.2E-98 T 13-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 RAM_08015 48a4617b21510b2f4a6a4381b17a9da3 395 ProSitePatterns PS00099 Thiolases active site. 374 387 - T 13-10-2018 IPR020610 Thiolase, active site GO:0016747 RAM_08015 48a4617b21510b2f4a6a4381b17a9da3 395 PIRSF PIRSF000429 3 394 3.0E-119 T 13-10-2018 IPR002155 Thiolase GO:0016747 RAM_08015 48a4617b21510b2f4a6a4381b17a9da3 395 SUPERFAMILY SSF53901 271 390 5.35E-36 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_08015 48a4617b21510b2f4a6a4381b17a9da3 395 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 84 102 - T 13-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 RAM_08015 48a4617b21510b2f4a6a4381b17a9da3 395 Pfam PF02803 Thiolase, C-terminal domain 271 391 6.9E-42 T 13-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 RAM_08015 48a4617b21510b2f4a6a4381b17a9da3 395 Gene3D G3DSA:3.40.47.10 126 389 6.9E-143 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_08015 48a4617b21510b2f4a6a4381b17a9da3 395 Gene3D G3DSA:3.40.47.10 5 276 6.9E-143 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_08015 48a4617b21510b2f4a6a4381b17a9da3 395 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 390 1.3E-136 T 13-10-2018 IPR002155 Thiolase GO:0016747 RAM_23105 1d59308be29c16aeffe8508943056007 778 PRINTS PR00132 Glycosyl hydrolase family 2 signature 338 356 9.2E-8 T 13-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RAM_23105 1d59308be29c16aeffe8508943056007 778 PRINTS PR00132 Glycosyl hydrolase family 2 signature 402 417 9.2E-8 T 13-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RAM_23105 1d59308be29c16aeffe8508943056007 778 PRINTS PR00132 Glycosyl hydrolase family 2 signature 306 320 9.2E-8 T 13-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RAM_23105 1d59308be29c16aeffe8508943056007 778 SUPERFAMILY SSF49785 36 193 1.84E-24 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_23105 1d59308be29c16aeffe8508943056007 778 SUPERFAMILY SSF51445 302 576 1.14E-56 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_23105 1d59308be29c16aeffe8508943056007 778 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 92 188 2.8E-11 T 13-10-2018 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_23105 1d59308be29c16aeffe8508943056007 778 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 301 441 9.8E-24 T 13-10-2018 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 RAM_23105 1d59308be29c16aeffe8508943056007 778 Gene3D G3DSA:2.60.40.10 675 775 3.9E-5 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_23105 1d59308be29c16aeffe8508943056007 778 SUPERFAMILY SSF49303 228 295 4.03E-5 T 13-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily RAM_23105 1d59308be29c16aeffe8508943056007 778 ProSitePatterns PS00608 Glycosyl hydrolases family 2 acid/base catalyst. 402 417 - T 13-10-2018 IPR023232 Glycoside hydrolase, family 2, active site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RAM_23105 1d59308be29c16aeffe8508943056007 778 Gene3D G3DSA:3.20.20.80 300 576 5.6E-61 T 13-10-2018 RAM_23105 1d59308be29c16aeffe8508943056007 778 Gene3D G3DSA:2.60.120.260 33 193 7.8E-22 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_02285 58771949d59b39409fe6e739fa7ecfcb 349 Pfam PF00107 Zinc-binding dehydrogenase 186 308 2.1E-18 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RAM_02285 58771949d59b39409fe6e739fa7ecfcb 349 SMART SM00829 14 342 6.4E-7 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_02285 58771949d59b39409fe6e739fa7ecfcb 349 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 63 77 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 RAM_02285 58771949d59b39409fe6e739fa7ecfcb 349 Gene3D G3DSA:3.40.50.720 160 314 7.9E-136 T 13-10-2018 RAM_02285 58771949d59b39409fe6e739fa7ecfcb 349 SUPERFAMILY SSF51735 151 312 7.45E-40 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_02285 58771949d59b39409fe6e739fa7ecfcb 349 SUPERFAMILY SSF50129 7 173 2.28E-55 T 13-10-2018 IPR011032 GroES-like superfamily RAM_02285 58771949d59b39409fe6e739fa7ecfcb 349 Gene3D G3DSA:3.90.180.10 15 342 7.9E-136 T 13-10-2018 RAM_02285 58771949d59b39409fe6e739fa7ecfcb 349 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 144 3.0E-29 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_07290 fcac1ae36bc346be69f73ce3ea3055b6 247 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 245 2.5E-53 T 13-10-2018 RAM_07290 fcac1ae36bc346be69f73ce3ea3055b6 247 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 137 165 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_07290 fcac1ae36bc346be69f73ce3ea3055b6 247 Gene3D G3DSA:3.40.50.720 3 246 4.1E-70 T 13-10-2018 RAM_07290 fcac1ae36bc346be69f73ce3ea3055b6 247 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 181 7.5E-5 T 13-10-2018 RAM_07290 fcac1ae36bc346be69f73ce3ea3055b6 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 2.8E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_07290 fcac1ae36bc346be69f73ce3ea3055b6 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 169 2.8E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_07290 fcac1ae36bc346be69f73ce3ea3055b6 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 138 2.8E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_07290 fcac1ae36bc346be69f73ce3ea3055b6 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 124 140 7.6E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_07290 fcac1ae36bc346be69f73ce3ea3055b6 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 7.6E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_07290 fcac1ae36bc346be69f73ce3ea3055b6 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 169 7.6E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_07290 fcac1ae36bc346be69f73ce3ea3055b6 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 209 229 7.6E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_07290 fcac1ae36bc346be69f73ce3ea3055b6 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 7.6E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_07290 fcac1ae36bc346be69f73ce3ea3055b6 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 188 7.6E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_07290 fcac1ae36bc346be69f73ce3ea3055b6 247 SUPERFAMILY SSF51735 1 245 6.64E-68 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_19735 4109d2984a3909b9747e054ee145e143 431 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 253 403 8.9E-20 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_19735 4109d2984a3909b9747e054ee145e143 431 Gene3D G3DSA:1.10.540.10 8 141 2.7E-21 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_19735 4109d2984a3909b9747e054ee145e143 431 Gene3D G3DSA:2.40.110.10 145 256 6.9E-37 T 13-10-2018 RAM_19735 4109d2984a3909b9747e054ee145e143 431 Gene3D G3DSA:1.20.140.10 257 409 1.0E-26 T 13-10-2018 RAM_19735 4109d2984a3909b9747e054ee145e143 431 SUPERFAMILY SSF47203 253 407 2.09E-16 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_19735 4109d2984a3909b9747e054ee145e143 431 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 10 142 3.7E-12 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_19735 4109d2984a3909b9747e054ee145e143 431 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 146 240 4.2E-21 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RAM_19735 4109d2984a3909b9747e054ee145e143 431 SUPERFAMILY SSF56645 60 265 4.32E-66 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_09560 c64eb1504508963dd28c1aff322afa32 309 Gene3D G3DSA:3.40.1190.20 6 291 1.6E-87 T 13-10-2018 IPR029056 Ribokinase-like RAM_09560 c64eb1504508963dd28c1aff322afa32 309 SUPERFAMILY SSF53613 4 309 4.13E-68 T 13-10-2018 IPR029056 Ribokinase-like RAM_09560 c64eb1504508963dd28c1aff322afa32 309 Pfam PF00294 pfkB family carbohydrate kinase 6 301 8.2E-44 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB RAM_09560 c64eb1504508963dd28c1aff322afa32 309 TIGRFAM TIGR04382 myo_inos_iolC_N: 5-dehydro-2-deoxygluconokinase 3 309 4.3E-105 T 13-10-2018 IPR030830 5-Dehydro-2-deoxygluconokinase KEGG: 00562+2.7.1.92 RAM_09560 c64eb1504508963dd28c1aff322afa32 309 Gene3D G3DSA:2.20.150.10 11 106 1.6E-87 T 13-10-2018 IPR023314 5-Dehydro-2-deoxygluconokinase-like superfamily KEGG: 00562+2.7.1.92 RAM_16160 b98d356f768d3ae077bc17dcf6bba538 382 PIRSF PIRSF001112 1 382 1.3E-121 T 13-10-2018 IPR016292 Epoxide hydrolase GO:0033961 Reactome: R-HSA-211945 RAM_16160 b98d356f768d3ae077bc17dcf6bba538 382 SUPERFAMILY SSF53474 4 380 1.4E-98 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_16160 b98d356f768d3ae077bc17dcf6bba538 382 PRINTS PR00412 Epoxide hydrolase signature 103 121 7.1E-10 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_16160 b98d356f768d3ae077bc17dcf6bba538 382 PRINTS PR00412 Epoxide hydrolase signature 132 147 7.1E-10 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_16160 b98d356f768d3ae077bc17dcf6bba538 382 PRINTS PR00412 Epoxide hydrolase signature 177 190 7.1E-10 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_16160 b98d356f768d3ae077bc17dcf6bba538 382 PRINTS PR00412 Epoxide hydrolase signature 355 377 7.1E-10 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_16160 b98d356f768d3ae077bc17dcf6bba538 382 PRINTS PR00412 Epoxide hydrolase signature 191 204 7.1E-10 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_16160 b98d356f768d3ae077bc17dcf6bba538 382 Gene3D G3DSA:3.40.50.1820 7 382 7.1E-139 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_16160 b98d356f768d3ae077bc17dcf6bba538 382 Pfam PF06441 Epoxide hydrolase N terminus 7 112 1.5E-37 T 13-10-2018 IPR010497 Epoxide hydrolase, N-terminal Reactome: R-HSA-211945 RAM_25415 ab8556274260f248d3c3cd5dafafbb2d 188 Gene3D G3DSA:1.20.120.1760 1 117 1.9E-12 T 13-10-2018 RAM_25415 ab8556274260f248d3c3cd5dafafbb2d 188 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 50 72 - T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RAM_25415 ab8556274260f248d3c3cd5dafafbb2d 188 PIRSF PIRSF000847 3 188 2.8E-45 T 13-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 RAM_25415 ab8556274260f248d3c3cd5dafafbb2d 188 Pfam PF01066 CDP-alcohol phosphatidyltransferase 7 72 3.5E-15 T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RAM_40890 96060fb250190cc1ba0ff21e8480f745 290 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 31 288 3.5E-33 T 13-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 RAM_40890 96060fb250190cc1ba0ff21e8480f745 290 Gene3D G3DSA:3.40.190.120 131 233 3.7E-59 T 13-10-2018 RAM_40890 96060fb250190cc1ba0ff21e8480f745 290 SUPERFAMILY SSF53850 31 288 1.49E-38 T 13-10-2018 RAM_40890 96060fb250190cc1ba0ff21e8480f745 290 Gene3D G3DSA:3.40.190.10 33 288 3.7E-59 T 13-10-2018 RAM_20910 038f3518af31c0e952e799c08e8b5efb 340 Pfam PF00296 Luciferase-like monooxygenase 8 278 2.7E-25 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_20910 038f3518af31c0e952e799c08e8b5efb 340 Gene3D G3DSA:3.20.20.30 2 339 3.3E-47 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_20910 038f3518af31c0e952e799c08e8b5efb 340 SUPERFAMILY SSF51679 7 333 2.09E-56 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_47020 0f4fd6938a52669b5df3f63a42035861 177 TIGRFAM TIGR00481 TIGR00481: Raf kinase inhibitor-like protein, YbhB/YbcL family 41 173 1.2E-39 T 13-10-2018 IPR005247 YbhB/YbcL RAM_47020 0f4fd6938a52669b5df3f63a42035861 177 Pfam PF01161 Phosphatidylethanolamine-binding protein 42 173 1.8E-35 T 13-10-2018 IPR008914 Phosphatidylethanolamine-binding protein RAM_47020 0f4fd6938a52669b5df3f63a42035861 177 SUPERFAMILY SSF49777 17 175 1.31E-48 T 13-10-2018 IPR036610 PEBP-like superfamily RAM_47020 0f4fd6938a52669b5df3f63a42035861 177 Gene3D G3DSA:3.90.280.10 2 175 4.9E-57 T 13-10-2018 IPR036610 PEBP-like superfamily RAM_38190 55c6d3a6fd0442adbe32173399ecad8b 319 Pfam PF03466 LysR substrate binding domain 89 295 1.9E-40 T 13-10-2018 IPR005119 LysR, substrate-binding RAM_38190 55c6d3a6fd0442adbe32173399ecad8b 319 Gene3D G3DSA:3.40.190.10 172 273 6.5E-35 T 13-10-2018 RAM_38190 55c6d3a6fd0442adbe32173399ecad8b 319 SUPERFAMILY SSF46785 2 112 5.83E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_38190 55c6d3a6fd0442adbe32173399ecad8b 319 Gene3D G3DSA:1.10.10.10 1 90 2.4E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_38190 55c6d3a6fd0442adbe32173399ecad8b 319 Gene3D G3DSA:3.40.190.10 93 287 6.5E-35 T 13-10-2018 RAM_38190 55c6d3a6fd0442adbe32173399ecad8b 319 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 63 8.6E-18 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_38190 55c6d3a6fd0442adbe32173399ecad8b 319 SUPERFAMILY SSF53850 91 295 1.63E-36 T 13-10-2018 RAM_05890 de523396271195433f0cd3addffcbb94 107 SUPERFAMILY SSF46785 3 96 7.93E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_05890 de523396271195433f0cd3addffcbb94 107 SMART SM00418 6 85 8.9E-16 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_05890 de523396271195433f0cd3addffcbb94 107 Pfam PF12840 Helix-turn-helix domain 5 65 2.6E-15 T 13-10-2018 RAM_05890 de523396271195433f0cd3addffcbb94 107 Gene3D G3DSA:1.10.10.10 4 106 1.0E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_05890 de523396271195433f0cd3addffcbb94 107 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 56 71 1.3E-9 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_05890 de523396271195433f0cd3addffcbb94 107 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 41 56 1.3E-9 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_05890 de523396271195433f0cd3addffcbb94 107 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 8 23 1.3E-9 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_46430 7aa6138dfa0647f0614d52733d7d3706 498 SUPERFAMILY SSF53720 12 465 3.01E-137 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RAM_46430 7aa6138dfa0647f0614d52733d7d3706 498 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 270 281 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 RAM_46430 7aa6138dfa0647f0614d52733d7d3706 498 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 242 249 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 RAM_46430 7aa6138dfa0647f0614d52733d7d3706 498 PIRSF PIRSF036492 22 498 1.7E-99 T 13-10-2018 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent GO:0006081|GO:0055114 RAM_46430 7aa6138dfa0647f0614d52733d7d3706 498 Pfam PF00171 Aldehyde dehydrogenase family 12 463 9.6E-132 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RAM_46430 7aa6138dfa0647f0614d52733d7d3706 498 Gene3D G3DSA:3.40.605.10 14 461 3.3E-143 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RAM_46430 7aa6138dfa0647f0614d52733d7d3706 498 Gene3D G3DSA:3.40.309.10 246 432 3.3E-143 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RAM_30760 bcaf79faec3ccc0cfd0451d56e75c4ff 186 SMART SM00563 13 123 1.4E-20 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 RAM_30760 bcaf79faec3ccc0cfd0451d56e75c4ff 186 SUPERFAMILY SSF69593 2 175 7.72E-28 T 13-10-2018 RAM_30760 bcaf79faec3ccc0cfd0451d56e75c4ff 186 Pfam PF01553 Acyltransferase 1 119 1.5E-15 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 RAM_47255 d2fbb231d20f86344a8fa519709215b8 186 SUPERFAMILY SSF46689 5 81 1.47E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_47255 d2fbb231d20f86344a8fa519709215b8 186 Gene3D G3DSA:1.10.357.10 1 185 1.2E-57 T 13-10-2018 RAM_47255 d2fbb231d20f86344a8fa519709215b8 186 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 57 1.2E-15 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_47255 d2fbb231d20f86344a8fa519709215b8 186 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 2.9E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_47255 d2fbb231d20f86344a8fa519709215b8 186 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 2.9E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_24880 aa409ebc94f0c1457ddee5200e9adb06 233 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 1.7E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_24880 aa409ebc94f0c1457ddee5200e9adb06 233 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 1.7E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_24880 aa409ebc94f0c1457ddee5200e9adb06 233 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 1.7E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_24880 aa409ebc94f0c1457ddee5200e9adb06 233 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 1.7E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_24880 aa409ebc94f0c1457ddee5200e9adb06 233 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 1.7E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_24880 aa409ebc94f0c1457ddee5200e9adb06 233 Pfam PF00106 short chain dehydrogenase 5 195 7.5E-41 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_24880 aa409ebc94f0c1457ddee5200e9adb06 233 SUPERFAMILY SSF51735 1 218 1.32E-52 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_24880 aa409ebc94f0c1457ddee5200e9adb06 233 Gene3D G3DSA:3.40.50.720 3 233 1.3E-56 T 13-10-2018 RAM_21250 5f2d73736b82a84700e2062e368f07da 402 Gene3D G3DSA:1.20.1250.20 6 392 2.6E-32 T 13-10-2018 RAM_21250 5f2d73736b82a84700e2062e368f07da 402 SUPERFAMILY SSF103473 9 392 1.02E-32 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_21250 5f2d73736b82a84700e2062e368f07da 402 PRINTS PR01035 Tetracycline resistance protein signature 83 107 7.9E-6 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RAM_21250 5f2d73736b82a84700e2062e368f07da 402 PRINTS PR01035 Tetracycline resistance protein signature 346 369 7.9E-6 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RAM_21250 5f2d73736b82a84700e2062e368f07da 402 PRINTS PR01035 Tetracycline resistance protein signature 139 161 7.9E-6 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RAM_21250 5f2d73736b82a84700e2062e368f07da 402 PRINTS PR01035 Tetracycline resistance protein signature 167 187 7.9E-6 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RAM_21250 5f2d73736b82a84700e2062e368f07da 402 Pfam PF07690 Major Facilitator Superfamily 36 362 5.2E-21 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_26940 82510c3ca5800eaa5e1b7bf24ca13ae6 277 Pfam PF00561 alpha/beta hydrolase fold 20 266 3.6E-21 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_26940 82510c3ca5800eaa5e1b7bf24ca13ae6 277 Gene3D G3DSA:3.40.50.1820 1 277 5.0E-54 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_26940 82510c3ca5800eaa5e1b7bf24ca13ae6 277 SUPERFAMILY SSF53474 4 277 3.08E-57 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_26940 82510c3ca5800eaa5e1b7bf24ca13ae6 277 PRINTS PR00111 Alpha/beta hydrolase fold signature 45 60 3.3E-10 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_26940 82510c3ca5800eaa5e1b7bf24ca13ae6 277 PRINTS PR00111 Alpha/beta hydrolase fold signature 86 99 3.3E-10 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_26940 82510c3ca5800eaa5e1b7bf24ca13ae6 277 PRINTS PR00111 Alpha/beta hydrolase fold signature 100 113 3.3E-10 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_26940 82510c3ca5800eaa5e1b7bf24ca13ae6 277 PRINTS PR00412 Epoxide hydrolase signature 254 276 5.8E-7 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_26940 82510c3ca5800eaa5e1b7bf24ca13ae6 277 PRINTS PR00412 Epoxide hydrolase signature 100 113 5.8E-7 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_26940 82510c3ca5800eaa5e1b7bf24ca13ae6 277 PRINTS PR00412 Epoxide hydrolase signature 45 60 5.8E-7 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_17985 4f0a3e19716774e71aa4928b5eed1667 628 SUPERFAMILY SSF50939 114 527 2.28E-10 T 13-10-2018 IPR036278 Sialidase superfamily KEGG: 00511+3.2.1.18|KEGG: 00600+3.2.1.18|Reactome: R-HSA-1660662|Reactome: R-HSA-4085001 RAM_17985 4f0a3e19716774e71aa4928b5eed1667 628 Gene3D G3DSA:2.120.10.10 115 395 5.0E-6 T 13-10-2018 RAM_39795 881d1c0fae8d518f2f31dc20ecd2b4e0 223 SUPERFAMILY SSF55594 139 223 1.44E-23 T 13-10-2018 IPR035895 HPr-like superfamily RAM_39795 881d1c0fae8d518f2f31dc20ecd2b4e0 223 Gene3D G3DSA:3.40.50.510 1 124 2.6E-42 T 13-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 RAM_39795 881d1c0fae8d518f2f31dc20ecd2b4e0 223 Gene3D G3DSA:3.30.1340.10 138 223 5.7E-27 T 13-10-2018 IPR035895 HPr-like superfamily RAM_39795 881d1c0fae8d518f2f31dc20ecd2b4e0 223 TIGRFAM TIGR02364 dha_pts: dihydroxyacetone kinase, phosphotransfer subunit 3 120 1.6E-36 T 13-10-2018 IPR012844 Dihydroxyacetone kinase phosphotransferase subunit, N-terminal domain RAM_39795 881d1c0fae8d518f2f31dc20ecd2b4e0 223 SUPERFAMILY SSF53062 2 122 8.76E-32 T 13-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 RAM_39795 881d1c0fae8d518f2f31dc20ecd2b4e0 223 Pfam PF00381 PTS HPr component phosphorylation site 139 217 1.6E-24 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like RAM_39795 881d1c0fae8d518f2f31dc20ecd2b4e0 223 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 140 217 7.5E-24 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like RAM_39795 881d1c0fae8d518f2f31dc20ecd2b4e0 223 PRINTS PR00107 Phosphocarrier protein signature 189 206 7.2E-12 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like RAM_39795 881d1c0fae8d518f2f31dc20ecd2b4e0 223 PRINTS PR00107 Phosphocarrier protein signature 149 165 7.2E-12 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like RAM_39795 881d1c0fae8d518f2f31dc20ecd2b4e0 223 PRINTS PR00107 Phosphocarrier protein signature 174 189 7.2E-12 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like RAM_39795 881d1c0fae8d518f2f31dc20ecd2b4e0 223 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 149 156 - T 13-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site RAM_39795 881d1c0fae8d518f2f31dc20ecd2b4e0 223 Pfam PF03610 PTS system fructose IIA component 4 115 2.0E-24 T 13-10-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 RAM_21795 216490627a7e87c461f917d7f22f08f2 313 Gene3D G3DSA:3.40.50.2000 173 295 3.6E-13 T 13-10-2018 RAM_21795 216490627a7e87c461f917d7f22f08f2 313 SUPERFAMILY SSF53756 47 308 1.62E-19 T 13-10-2018 RAM_21795 216490627a7e87c461f917d7f22f08f2 313 Pfam PF00534 Glycosyl transferases group 1 198 289 7.2E-9 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 RAM_23310 214b7a3e301cf5b70372cc44a083474c 581 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 26 134 5.2E-25 T 13-10-2018 RAM_23310 214b7a3e301cf5b70372cc44a083474c 581 SUPERFAMILY SSF52833 20 135 7.83E-28 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RAM_23310 214b7a3e301cf5b70372cc44a083474c 581 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 514 525 - T 13-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_23310 214b7a3e301cf5b70372cc44a083474c 581 Gene3D G3DSA:3.10.20.600 405 497 2.1E-27 T 13-10-2018 RAM_23310 214b7a3e301cf5b70372cc44a083474c 581 Gene3D G3DSA:1.20.1440.230 499 578 1.1E-19 T 13-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_23310 214b7a3e301cf5b70372cc44a083474c 581 Gene3D G3DSA:1.10.10.1590 10 75 2.7E-11 T 13-10-2018 RAM_23310 214b7a3e301cf5b70372cc44a083474c 581 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 220 392 2.4E-47 T 13-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_23310 214b7a3e301cf5b70372cc44a083474c 581 Gene3D G3DSA:3.40.30.10 79 145 1.8E-7 T 13-10-2018 RAM_23310 214b7a3e301cf5b70372cc44a083474c 581 SUPERFAMILY SSF142984 414 496 4.71E-22 T 13-10-2018 RAM_23310 214b7a3e301cf5b70372cc44a083474c 581 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 505 575 6.0E-19 T 13-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_23310 214b7a3e301cf5b70372cc44a083474c 581 SMART SM00928 501 546 2.7E-11 T 13-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_23310 214b7a3e301cf5b70372cc44a083474c 581 Gene3D G3DSA:3.40.50.11540 225 404 5.0E-76 T 13-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_23310 214b7a3e301cf5b70372cc44a083474c 581 SUPERFAMILY SSF140490 501 575 3.79E-19 T 13-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_23310 214b7a3e301cf5b70372cc44a083474c 581 Pfam PF10531 SLBB domain 416 460 4.1E-11 T 13-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_23310 214b7a3e301cf5b70372cc44a083474c 581 SUPERFAMILY SSF142019 181 411 1.44E-81 T 13-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_39360 3be7f2edd9485f5944ac86024bb2eb6e 409 SMART SM00507 313 365 1.6E-11 T 13-10-2018 IPR003615 HNH nuclease RAM_39360 3be7f2edd9485f5944ac86024bb2eb6e 409 Pfam PF01844 HNH endonuclease 330 369 5.7E-6 T 13-10-2018 IPR002711 HNH endonuclease GO:0003676|GO:0004519 RAM_39360 3be7f2edd9485f5944ac86024bb2eb6e 409 Pfam PF02720 Domain of unknown function (DUF222) 20 322 1.2E-38 T 13-10-2018 IPR003870 Domain of unknown function DUF222 RAM_43360 0260397b9d7b9dfa871866bf56209151 229 TIGRFAM TIGR00101 ureG: urease accessory protein UreG 37 226 1.0E-77 T 13-10-2018 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 RAM_43360 0260397b9d7b9dfa871866bf56209151 229 PIRSF PIRSF005624 19 229 1.9E-43 T 13-10-2018 IPR012202 [NiFe]-hydrogenase/urease maturation factor, Ni2-binding GTPase GO:0003924|GO:0016151 RAM_43360 0260397b9d7b9dfa871866bf56209151 229 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 38 208 1.2E-32 T 13-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain RAM_43360 0260397b9d7b9dfa871866bf56209151 229 Gene3D G3DSA:3.40.50.300 36 228 1.3E-44 T 13-10-2018 RAM_43360 0260397b9d7b9dfa871866bf56209151 229 Hamap MF_01389 Urease accessory protein UreG [ureG]. 34 229 41.703 T 13-10-2018 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 RAM_43360 0260397b9d7b9dfa871866bf56209151 229 SUPERFAMILY SSF52540 27 227 2.3E-34 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_27065 923b7158af60a7f104f5d685f12f6d37 254 Pfam PF00975 Thioesterase domain 22 233 4.9E-40 T 13-10-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 RAM_27065 923b7158af60a7f104f5d685f12f6d37 254 SMART SM00824 Thioesterase 24 244 1.3E-5 T 13-10-2018 IPR020802 Polyketide synthase, thioesterase domain GO:0009058|GO:0016788 RAM_27065 923b7158af60a7f104f5d685f12f6d37 254 Gene3D G3DSA:3.40.50.1820 2 244 1.3E-58 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_27065 923b7158af60a7f104f5d685f12f6d37 254 SUPERFAMILY SSF53474 7 243 8.24E-44 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_15475 dea7c8c23952ac2eff1ef5a112c2c52a 191 SUPERFAMILY SSF48498 98 187 4.58E-5 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_15475 dea7c8c23952ac2eff1ef5a112c2c52a 191 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 64 9.4E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_15475 dea7c8c23952ac2eff1ef5a112c2c52a 191 Gene3D G3DSA:1.10.357.10 5 191 2.1E-42 T 13-10-2018 RAM_15475 dea7c8c23952ac2eff1ef5a112c2c52a 191 SUPERFAMILY SSF46689 10 76 8.25E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_28155 14deb73bed86a76bae4c7691c1310663 255 Gene3D G3DSA:1.10.630.10 2 230 5.2E-49 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_28155 14deb73bed86a76bae4c7691c1310663 255 Pfam PF00067 Cytochrome P450 84 191 1.6E-13 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_28155 14deb73bed86a76bae4c7691c1310663 255 SUPERFAMILY SSF48264 44 222 6.29E-37 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_28155 14deb73bed86a76bae4c7691c1310663 255 PRINTS PR00359 B-class P450 signature 98 109 2.4E-20 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_28155 14deb73bed86a76bae4c7691c1310663 255 PRINTS PR00359 B-class P450 signature 143 158 2.4E-20 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_28155 14deb73bed86a76bae4c7691c1310663 255 PRINTS PR00359 B-class P450 signature 115 142 2.4E-20 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_28155 14deb73bed86a76bae4c7691c1310663 255 PRINTS PR00359 B-class P450 signature 173 184 2.4E-20 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_28155 14deb73bed86a76bae4c7691c1310663 255 PRINTS PR00359 B-class P450 signature 164 173 2.4E-20 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_28155 14deb73bed86a76bae4c7691c1310663 255 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 166 175 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RAM_19390 60df28698807ab56519c0bea143aa953 87 SUPERFAMILY SSF50129 2 70 3.5E-14 T 13-10-2018 IPR011032 GroES-like superfamily RAM_19390 60df28698807ab56519c0bea143aa953 87 Gene3D G3DSA:3.90.180.10 1 80 7.5E-17 T 13-10-2018 RAM_40770 2caf1758d4d8d799379fe343514fd0b4 112 Gene3D G3DSA:1.10.10.10 9 103 9.0E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_40770 2caf1758d4d8d799379fe343514fd0b4 112 SUPERFAMILY SSF46785 6 97 5.66E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_40770 2caf1758d4d8d799379fe343514fd0b4 112 Pfam PF03551 Transcriptional regulator PadR-like family 25 87 3.2E-13 T 13-10-2018 IPR005149 Transcription regulator PadR, N-terminal RAM_07920 e26979f3a1a35193fdac3d86fde71b1a 81 Gene3D G3DSA:3.40.30.10 2 79 1.4E-8 T 13-10-2018 RAM_07920 e26979f3a1a35193fdac3d86fde71b1a 81 SUPERFAMILY SSF52833 5 80 1.45E-8 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RAM_46795 e8d750f8e86aa973c78aa99a2d877dcb 138 SUPERFAMILY SSF88723 1 122 6.73E-12 T 13-10-2018 IPR029060 PIN-like domain superfamily RAM_46795 e8d750f8e86aa973c78aa99a2d877dcb 138 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 2 127 10.052 T 13-10-2018 IPR022907 VapC family GO:0004540 RAM_46795 e8d750f8e86aa973c78aa99a2d877dcb 138 Gene3D G3DSA:3.40.50.1010 1 127 5.6E-7 T 13-10-2018 RAM_46795 e8d750f8e86aa973c78aa99a2d877dcb 138 Pfam PF01850 PIN domain 2 120 4.7E-12 T 13-10-2018 IPR002716 PIN domain RAM_39835 a30e19cec346d5da225897455c4935e7 219 Gene3D G3DSA:3.40.1350.10 93 205 1.1E-24 T 13-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 RAM_39835 a30e19cec346d5da225897455c4935e7 219 Hamap MF_00722 Endonuclease NucS [nucS]. 1 211 30.911 T 13-10-2018 IPR002793 Endonuclease NucS GO:0004519 RAM_39835 a30e19cec346d5da225897455c4935e7 219 Pfam PF01939 Endonuclease NucS 1 219 1.1E-80 T 13-10-2018 IPR002793 Endonuclease NucS GO:0004519 RAM_39835 a30e19cec346d5da225897455c4935e7 219 Gene3D G3DSA:2.70.180.20 1 89 7.1E-20 T 13-10-2018 RAM_24305 208470c982c179eaeaf838c7670e8968 393 Pfam PF00155 Aminotransferase class I and II 49 376 2.3E-29 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RAM_24305 208470c982c179eaeaf838c7670e8968 393 Gene3D G3DSA:3.90.1150.10 10 377 3.5E-112 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_24305 208470c982c179eaeaf838c7670e8968 393 Gene3D G3DSA:3.40.640.10 57 275 3.5E-112 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_24305 208470c982c179eaeaf838c7670e8968 393 SUPERFAMILY SSF53383 5 377 9.57E-92 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_24570 f0cebdad3f55dd4f2cec2d8c61167ef6 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 162 178 7.7E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_24570 f0cebdad3f55dd4f2cec2d8c61167ef6 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 178 190 7.7E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_24570 f0cebdad3f55dd4f2cec2d8c61167ef6 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 148 162 7.7E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_24570 f0cebdad3f55dd4f2cec2d8c61167ef6 208 SUPERFAMILY SSF46894 138 208 8.16E-18 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_24570 f0cebdad3f55dd4f2cec2d8c61167ef6 208 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 202 1.8E-15 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_24570 f0cebdad3f55dd4f2cec2d8c61167ef6 208 SMART SM00421 145 202 1.9E-17 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_24570 f0cebdad3f55dd4f2cec2d8c61167ef6 208 Gene3D G3DSA:1.10.10.10 95 208 2.3E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_26715 0db75fd77b0be5aaf61c3dec59da6f61 156 Gene3D G3DSA:3.10.20.30 1 74 1.6E-26 T 13-10-2018 IPR012675 Beta-grasp domain superfamily RAM_26715 0db75fd77b0be5aaf61c3dec59da6f61 156 Pfam PF01799 [2Fe-2S] binding domain 73 146 7.2E-31 T 13-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RAM_26715 0db75fd77b0be5aaf61c3dec59da6f61 156 SUPERFAMILY SSF47741 85 151 3.01E-32 T 13-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily RAM_26715 0db75fd77b0be5aaf61c3dec59da6f61 156 SUPERFAMILY SSF54292 2 78 2.49E-22 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RAM_26715 0db75fd77b0be5aaf61c3dec59da6f61 156 Gene3D G3DSA:1.10.150.120 75 156 2.4E-33 T 13-10-2018 RAM_26715 0db75fd77b0be5aaf61c3dec59da6f61 156 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 5 59 1.7E-5 T 13-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RAM_05905 86e01f2e85b263635c0b4ebf1ba4ee67 165 SUPERFAMILY SSF52540 3 160 1.64E-22 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_05905 86e01f2e85b263635c0b4ebf1ba4ee67 165 TIGRFAM TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family 4 146 1.8E-52 T 13-10-2018 IPR006001 Carbohydrate kinase, thermoresistant glucokinase GO:0005975|GO:0016301 KEGG: 00030+2.7.1.12|MetaCyc: PWY-5530 RAM_05905 86e01f2e85b263635c0b4ebf1ba4ee67 165 Gene3D G3DSA:3.40.50.300 1 165 2.8E-58 T 13-10-2018 RAM_05905 86e01f2e85b263635c0b4ebf1ba4ee67 165 Pfam PF01202 Shikimate kinase 10 159 1.0E-11 T 13-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 RAM_34110 0898758b55d01511e3e4164fc3ea7a6a 409 Pfam PF00144 Beta-lactamase 23 402 1.1E-67 T 13-10-2018 IPR001466 Beta-lactamase-related RAM_34110 0898758b55d01511e3e4164fc3ea7a6a 409 SUPERFAMILY SSF56601 17 406 1.76E-95 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_34110 0898758b55d01511e3e4164fc3ea7a6a 409 Gene3D G3DSA:3.40.710.10 4 409 2.5E-128 T 13-10-2018 RAM_05155 ab5441b4f4f291c6196b52059e228b98 376 SUPERFAMILY SSF53756 8 370 2.56E-65 T 13-10-2018 RAM_05155 ab5441b4f4f291c6196b52059e228b98 376 Gene3D G3DSA:3.40.50.2000 11 365 1.7E-55 T 13-10-2018 RAM_05155 ab5441b4f4f291c6196b52059e228b98 376 Gene3D G3DSA:3.40.50.2000 169 349 1.7E-55 T 13-10-2018 RAM_05155 ab5441b4f4f291c6196b52059e228b98 376 Pfam PF13439 Glycosyltransferase Family 4 13 173 9.2E-20 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 RAM_05155 ab5441b4f4f291c6196b52059e228b98 376 Pfam PF00534 Glycosyl transferases group 1 193 348 2.1E-17 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 RAM_15840 7f7d64533eb24df2ba0099fe9bffa63f 268 Pfam PF12706 Beta-lactamase superfamily domain 43 231 4.5E-17 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_15840 7f7d64533eb24df2ba0099fe9bffa63f 268 SUPERFAMILY SSF56281 12 256 7.84E-21 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_15840 7f7d64533eb24df2ba0099fe9bffa63f 268 Gene3D G3DSA:3.60.15.10 10 267 2.4E-54 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_05030 5481004b6bf7bd10f3079fa1d297cb0d 705 Pfam PF04542 Sigma-70 region 2 31 99 4.0E-13 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_05030 5481004b6bf7bd10f3079fa1d297cb0d 705 Gene3D G3DSA:1.10.10.10 121 189 6.2E-9 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_05030 5481004b6bf7bd10f3079fa1d297cb0d 705 Pfam PF13490 Putative zinc-finger 201 235 7.0E-7 T 13-10-2018 IPR027383 Putative zinc-finger RAM_05030 5481004b6bf7bd10f3079fa1d297cb0d 705 SUPERFAMILY SSF88659 125 187 1.7E-8 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_05030 5481004b6bf7bd10f3079fa1d297cb0d 705 Gene3D G3DSA:1.10.10.1320 201 256 4.7E-8 T 13-10-2018 RAM_05030 5481004b6bf7bd10f3079fa1d297cb0d 705 SUPERFAMILY SSF88946 8 103 2.88E-17 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_05030 5481004b6bf7bd10f3079fa1d297cb0d 705 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 30 187 4.7E-20 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_05030 5481004b6bf7bd10f3079fa1d297cb0d 705 Gene3D G3DSA:1.10.1740.10 9 119 2.5E-16 T 13-10-2018 RAM_44225 c49111fae331bd827fa3f05d34dcae0f 195 SUPERFAMILY SSF53597 1 194 4.19E-27 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RAM_44225 c49111fae331bd827fa3f05d34dcae0f 195 Gene3D G3DSA:3.40.430.10 1 194 1.7E-38 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RAM_44225 c49111fae331bd827fa3f05d34dcae0f 195 Pfam PF01872 RibD C-terminal domain 3 185 4.2E-14 T 13-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 RAM_44150 d552e1fd5a381f875addb2cb240b8844 260 Pfam PF14337 Domain of unknown function (DUF4393) 105 255 6.5E-13 T 13-10-2018 IPR025506 Protein of unknown function DUF4393 RAM_44150 d552e1fd5a381f875addb2cb240b8844 260 Gene3D G3DSA:1.10.10.2280 120 259 1.5E-52 T 13-10-2018 RAM_34365 2f09e6afaba55ace22685e1be612570a 128 TIGRFAM TIGR03618 Rv1155_F420: PPOX class probable F420-dependent enzyme 8 127 9.3E-28 T 13-10-2018 IPR019920 F420-binding domain, putative RAM_34365 2f09e6afaba55ace22685e1be612570a 128 Gene3D G3DSA:2.30.110.10 1 128 1.2E-26 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_34365 2f09e6afaba55ace22685e1be612570a 128 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 6 82 8.7E-11 T 13-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RAM_34365 2f09e6afaba55ace22685e1be612570a 128 SUPERFAMILY SSF50475 3 125 2.68E-23 T 13-10-2018 RAM_43910 9fb3662979105167c985da71b56efce7 488 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 131 143 - T 13-10-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 RAM_43910 9fb3662979105167c985da71b56efce7 488 SMART SM00220 13 274 4.6E-48 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_43910 9fb3662979105167c985da71b56efce7 488 Pfam PF00069 Protein kinase domain 13 219 3.1E-39 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_43910 9fb3662979105167c985da71b56efce7 488 PIRSF PIRSF000654 24 263 2.8E-19 T 13-10-2018 RAM_43910 9fb3662979105167c985da71b56efce7 488 Gene3D G3DSA:3.30.200.20 4 91 3.6E-26 T 13-10-2018 RAM_43910 9fb3662979105167c985da71b56efce7 488 Gene3D G3DSA:1.10.510.10 95 277 3.8E-40 T 13-10-2018 RAM_43910 9fb3662979105167c985da71b56efce7 488 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 19 42 - T 13-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 RAM_43910 9fb3662979105167c985da71b56efce7 488 SUPERFAMILY SSF56112 9 291 1.91E-62 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_06390 54f9209d42e666865e915f842cfebb1a 377 Gene3D G3DSA:3.30.565.10 257 376 5.2E-23 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_06390 54f9209d42e666865e915f842cfebb1a 377 Pfam PF13796 Putative sensor 20 133 1.5E-22 T 13-10-2018 IPR025828 Putative sensor domain RAM_06390 54f9209d42e666865e915f842cfebb1a 377 Pfam PF07730 Histidine kinase 187 253 4.6E-15 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_06390 54f9209d42e666865e915f842cfebb1a 377 SUPERFAMILY SSF55874 265 374 4.02E-12 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_04075 993c7c7ebec45e13cebe6dcb42010ff2 804 Gene3D G3DSA:3.40.50.300 307 688 1.0E-118 T 13-10-2018 RAM_04075 993c7c7ebec45e13cebe6dcb42010ff2 804 Gene3D G3DSA:1.10.486.10 410 601 1.0E-118 T 13-10-2018 RAM_04075 993c7c7ebec45e13cebe6dcb42010ff2 804 Pfam PF13361 UvrD-like helicase C-terminal domain 304 454 1.0E-35 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 RAM_04075 993c7c7ebec45e13cebe6dcb42010ff2 804 Pfam PF00580 UvrD/REP helicase N-terminal domain 28 298 1.9E-79 T 13-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 RAM_04075 993c7c7ebec45e13cebe6dcb42010ff2 804 TIGRFAM TIGR01073 pcrA: ATP-dependent DNA helicase PcrA 24 794 6.9E-288 T 13-10-2018 IPR005751 ATP-dependent DNA helicase PcrA GO:0004003|GO:0005737|GO:0006268 RAM_04075 993c7c7ebec45e13cebe6dcb42010ff2 804 Gene3D G3DSA:3.40.50.300 28 300 4.1E-99 T 13-10-2018 RAM_04075 993c7c7ebec45e13cebe6dcb42010ff2 804 SUPERFAMILY SSF52540 24 697 2.41E-175 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_04075 993c7c7ebec45e13cebe6dcb42010ff2 804 Pfam PF13361 UvrD-like helicase C-terminal domain 528 669 1.8E-25 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 RAM_04075 993c7c7ebec45e13cebe6dcb42010ff2 804 Gene3D G3DSA:1.10.10.160 129 208 4.1E-99 T 13-10-2018 IPR013986 DExx box DNA helicase domain superfamily RAM_28680 9ab83e202435cd25393cfc7579d8b5fd 282 SUPERFAMILY SSF46785 3 84 4.17E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_28680 9ab83e202435cd25393cfc7579d8b5fd 282 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 6.7E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_28680 9ab83e202435cd25393cfc7579d8b5fd 282 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 6.7E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_28680 9ab83e202435cd25393cfc7579d8b5fd 282 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 6.7E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_28680 9ab83e202435cd25393cfc7579d8b5fd 282 SUPERFAMILY SSF53850 96 281 5.32E-18 T 13-10-2018 RAM_28680 9ab83e202435cd25393cfc7579d8b5fd 282 Pfam PF03466 LysR substrate binding domain 97 278 5.9E-17 T 13-10-2018 IPR005119 LysR, substrate-binding RAM_28680 9ab83e202435cd25393cfc7579d8b5fd 282 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 1.4E-21 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_28680 9ab83e202435cd25393cfc7579d8b5fd 282 Gene3D G3DSA:3.40.190.10 103 277 8.0E-17 T 13-10-2018 RAM_28680 9ab83e202435cd25393cfc7579d8b5fd 282 Gene3D G3DSA:3.40.190.10 166 258 8.0E-17 T 13-10-2018 RAM_28680 9ab83e202435cd25393cfc7579d8b5fd 282 Gene3D G3DSA:1.10.10.10 1 85 2.3E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_07900 edf23eec5df7eb507b8709f78da80174 356 Pfam PF06224 Winged helix DNA-binding domain 23 340 7.0E-75 T 13-10-2018 IPR009351 Protein of unknown function DUF1006 RAM_39760 078dcd24d65d23aaa3efc9e9f28c4988 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 34 53 2.0E-13 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_39760 078dcd24d65d23aaa3efc9e9f28c4988 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 7 23 2.0E-13 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_39760 078dcd24d65d23aaa3efc9e9f28c4988 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 23 34 2.0E-13 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_39760 078dcd24d65d23aaa3efc9e9f28c4988 158 SUPERFAMILY SSF54909 69 150 6.03E-16 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_39760 078dcd24d65d23aaa3efc9e9f28c4988 158 Pfam PF01037 Lrp/AsnC ligand binding domain 75 146 3.2E-15 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RAM_39760 078dcd24d65d23aaa3efc9e9f28c4988 158 Gene3D G3DSA:3.30.70.920 60 143 3.8E-22 T 13-10-2018 RAM_39760 078dcd24d65d23aaa3efc9e9f28c4988 158 Pfam PF13412 Winged helix-turn-helix DNA-binding 8 54 8.5E-16 T 13-10-2018 RAM_39760 078dcd24d65d23aaa3efc9e9f28c4988 158 SMART SM00344 10 116 1.8E-32 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RAM_39760 078dcd24d65d23aaa3efc9e9f28c4988 158 SUPERFAMILY SSF46785 7 66 9.6E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_39760 078dcd24d65d23aaa3efc9e9f28c4988 158 Gene3D G3DSA:1.10.10.10 10 59 5.2E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_11680 dc1d1e78e4379480a34e4247788964c4 403 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 88 102 - T 13-10-2018 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 RAM_11680 dc1d1e78e4379480a34e4247788964c4 403 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 60 385 2.5E-49 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RAM_11680 dc1d1e78e4379480a34e4247788964c4 403 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 9 398 51.003 T 13-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 RAM_11680 dc1d1e78e4379480a34e4247788964c4 403 Gene3D G3DSA:3.40.50.1100 17 213 7.8E-183 T 13-10-2018 RAM_11680 dc1d1e78e4379480a34e4247788964c4 403 Gene3D G3DSA:3.40.50.1100 61 391 7.8E-183 T 13-10-2018 RAM_11680 dc1d1e78e4379480a34e4247788964c4 403 SUPERFAMILY SSF53686 10 397 2.62E-144 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RAM_11680 dc1d1e78e4379480a34e4247788964c4 403 PIRSF PIRSF001413 1 401 1.7E-155 T 13-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 RAM_11680 dc1d1e78e4379480a34e4247788964c4 403 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 14 396 8.0E-183 T 13-10-2018 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 RAM_22115 0701f7eaae57318aadfc1d5d75c0473f 667 Gene3D G3DSA:3.20.20.80 227 576 2.2E-105 T 13-10-2018 RAM_22115 0701f7eaae57318aadfc1d5d75c0473f 667 Gene3D G3DSA:2.60.40.1180 579 657 1.7E-26 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta RAM_22115 0701f7eaae57318aadfc1d5d75c0473f 667 SUPERFAMILY SSF74650 6 214 6.28E-29 T 13-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 RAM_22115 0701f7eaae57318aadfc1d5d75c0473f 667 SUPERFAMILY SSF51445 216 575 3.61E-61 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_22115 0701f7eaae57318aadfc1d5d75c0473f 667 Gene3D G3DSA:2.60.40.1760 2 226 1.2E-42 T 13-10-2018 RAM_22115 0701f7eaae57318aadfc1d5d75c0473f 667 SUPERFAMILY SSF51011 577 657 1.08E-22 T 13-10-2018 RAM_22115 0701f7eaae57318aadfc1d5d75c0473f 667 Pfam PF01055 Glycosyl hydrolases family 31 208 660 2.3E-116 T 13-10-2018 IPR000322 Glycoside hydrolase family 31 GO:0004553|GO:0005975 RAM_28185 8862f19a2f356576543812a8ca3d3e3b 412 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 237 408 3.0E-42 T 13-10-2018 IPR000160 GGDEF domain RAM_28185 8862f19a2f356576543812a8ca3d3e3b 412 SUPERFAMILY SSF55073 246 408 1.65E-40 T 13-10-2018 IPR029787 Nucleotide cyclase RAM_28185 8862f19a2f356576543812a8ca3d3e3b 412 SMART SM00267 229 409 6.3E-41 T 13-10-2018 IPR000160 GGDEF domain RAM_28185 8862f19a2f356576543812a8ca3d3e3b 412 Pfam PF00990 Diguanylate cyclase, GGDEF domain 240 405 7.8E-38 T 13-10-2018 IPR000160 GGDEF domain RAM_28185 8862f19a2f356576543812a8ca3d3e3b 412 Gene3D G3DSA:3.30.70.270 234 411 1.1E-48 T 13-10-2018 RAM_25230 4804aec1a4b465ef9d64e47b2ab5b76b 234 Pfam PF02308 MgtC family 14 137 7.3E-36 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RAM_25230 4804aec1a4b465ef9d64e47b2ab5b76b 234 PRINTS PR01837 MgtC/SapB protein signature 64 86 2.0E-45 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RAM_25230 4804aec1a4b465ef9d64e47b2ab5b76b 234 PRINTS PR01837 MgtC/SapB protein signature 91 115 2.0E-45 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RAM_25230 4804aec1a4b465ef9d64e47b2ab5b76b 234 PRINTS PR01837 MgtC/SapB protein signature 32 50 2.0E-45 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RAM_25230 4804aec1a4b465ef9d64e47b2ab5b76b 234 PRINTS PR01837 MgtC/SapB protein signature 13 32 2.0E-45 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RAM_25230 4804aec1a4b465ef9d64e47b2ab5b76b 234 Gene3D G3DSA:3.30.70.260 146 234 1.1E-20 T 13-10-2018 RAM_37955 4a9626bc4903625cba864745b45d37b1 241 PIRSF PIRSF006648 1 241 1.3E-16 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 RAM_37955 4a9626bc4903625cba864745b45d37b1 241 Pfam PF01061 ABC-2 type transporter 6 203 5.2E-30 T 13-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 RAM_38810 0a9bdfa8d7604f3ba93089843bb9ba56 403 Gene3D G3DSA:3.30.9.10 102 333 1.9E-127 T 13-10-2018 RAM_38810 0a9bdfa8d7604f3ba93089843bb9ba56 403 Pfam PF01266 FAD dependent oxidoreductase 22 367 1.8E-59 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RAM_38810 0a9bdfa8d7604f3ba93089843bb9ba56 403 SUPERFAMILY SSF54373 249 326 6.15E-7 T 13-10-2018 RAM_38810 0a9bdfa8d7604f3ba93089843bb9ba56 403 Gene3D G3DSA:3.50.50.60 22 377 1.9E-127 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_38810 0a9bdfa8d7604f3ba93089843bb9ba56 403 TIGRFAM TIGR01373 soxB: sarcosine oxidase, beta subunit family 11 395 1.0E-187 T 13-10-2018 IPR006278 Sarcosine oxidase subunit beta GO:0008115|GO:0046653|GO:0055114 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 RAM_38810 0a9bdfa8d7604f3ba93089843bb9ba56 403 SUPERFAMILY SSF51905 21 391 2.99E-56 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_11925 b61185a95eae27683bf46d3777be74d2 175 Gene3D G3DSA:1.10.10.10 62 106 4.7E-10 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_11925 b61185a95eae27683bf46d3777be74d2 175 Pfam PF02631 RecX family 37 157 5.8E-27 T 13-10-2018 IPR003783 Regulatory protein RecX GO:0006282 RAM_11925 b61185a95eae27683bf46d3777be74d2 175 Hamap MF_01114 Regulatory protein RecX [recX]. 3 162 15.184 T 13-10-2018 IPR003783 Regulatory protein RecX GO:0006282 RAM_11925 b61185a95eae27683bf46d3777be74d2 175 Gene3D G3DSA:1.10.10.2800 4 60 1.1E-6 T 13-10-2018 RAM_23930 0c6bb9dd5361921fce5c4b7f16d5b17f 254 Gene3D G3DSA:3.40.50.1820 1 252 3.5E-39 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_23930 0c6bb9dd5361921fce5c4b7f16d5b17f 254 Pfam PF00561 alpha/beta hydrolase fold 20 118 7.0E-8 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_23930 0c6bb9dd5361921fce5c4b7f16d5b17f 254 SUPERFAMILY SSF53474 2 252 8.86E-28 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_40800 064dc7dfef8fe68f75175305cdd01dac 311 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 141 162 - T 13-10-2018 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 RAM_40800 064dc7dfef8fe68f75175305cdd01dac 311 SUPERFAMILY SSF51735 114 256 2.04E-28 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_40800 064dc7dfef8fe68f75175305cdd01dac 311 Gene3D G3DSA:3.90.180.10 9 307 1.1E-74 T 13-10-2018 RAM_40800 064dc7dfef8fe68f75175305cdd01dac 311 SUPERFAMILY SSF50129 1 150 3.93E-26 T 13-10-2018 IPR011032 GroES-like superfamily RAM_40800 064dc7dfef8fe68f75175305cdd01dac 311 Gene3D G3DSA:3.40.50.720 125 255 1.1E-74 T 13-10-2018 RAM_40800 064dc7dfef8fe68f75175305cdd01dac 311 Pfam PF13602 Zinc-binding dehydrogenase 183 309 1.3E-19 T 13-10-2018 RAM_40800 064dc7dfef8fe68f75175305cdd01dac 311 SMART SM00829 10 309 3.2E-10 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_28900 3458f92ff76a080b6bb9d9f44582b870 521 Pfam PF16640 Bacterial Ig-like domain (group 3) 170 253 2.8E-20 T 13-10-2018 IPR032109 Bacterial Ig-like domain (group 3) RAM_28900 3458f92ff76a080b6bb9d9f44582b870 521 Pfam PF16640 Bacterial Ig-like domain (group 3) 271 351 2.1E-13 T 13-10-2018 IPR032109 Bacterial Ig-like domain (group 3) RAM_28900 3458f92ff76a080b6bb9d9f44582b870 521 Gene3D G3DSA:2.60.40.10 164 252 1.8E-17 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_28900 3458f92ff76a080b6bb9d9f44582b870 521 Gene3D G3DSA:2.60.40.10 262 351 3.2E-13 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_12595 934c2206a3ee47baf7ac741784317cc6 205 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 20 33 1.2E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_12595 934c2206a3ee47baf7ac741784317cc6 205 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 41 64 1.2E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_12595 934c2206a3ee47baf7ac741784317cc6 205 SUPERFAMILY SSF48498 110 187 2.8E-5 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_12595 934c2206a3ee47baf7ac741784317cc6 205 SUPERFAMILY SSF46689 7 86 1.25E-19 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_12595 934c2206a3ee47baf7ac741784317cc6 205 Gene3D G3DSA:1.10.357.10 3 195 2.4E-34 T 13-10-2018 RAM_12595 934c2206a3ee47baf7ac741784317cc6 205 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 66 3.0E-14 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_12455 123dd7f46da20607ee290b3108bfe72b 377 TIGRFAM TIGR00345 GET3_arsA_TRC40: transport-energizing ATPase, TRC40/GET3/ArsA family 6 284 3.0E-50 T 13-10-2018 IPR016300 Arsenical pump ATPase, ArsA/GET3 GO:0005524|GO:0016887 Reactome: R-HSA-381038 RAM_12455 123dd7f46da20607ee290b3108bfe72b 377 Gene3D G3DSA:3.40.50.300 1 292 3.9E-75 T 13-10-2018 RAM_12455 123dd7f46da20607ee290b3108bfe72b 377 Pfam PF02374 Anion-transporting ATPase 2 285 3.3E-54 T 13-10-2018 IPR025723 Anion-transporting ATPase-like domain Reactome: R-HSA-381038 RAM_12455 123dd7f46da20607ee290b3108bfe72b 377 Gene3D G3DSA:2.60.40.790 304 374 2.7E-13 T 13-10-2018 IPR008978 HSP20-like chaperone RAM_12455 123dd7f46da20607ee290b3108bfe72b 377 SUPERFAMILY SSF52540 2 254 1.01E-41 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_28355 bf4bb9f758e630df727e662562795402 103 Pfam PF03551 Transcriptional regulator PadR-like family 10 81 1.6E-13 T 13-10-2018 IPR005149 Transcription regulator PadR, N-terminal RAM_28355 bf4bb9f758e630df727e662562795402 103 SUPERFAMILY SSF46785 7 91 1.48E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_28355 bf4bb9f758e630df727e662562795402 103 Gene3D G3DSA:1.10.10.10 1 97 7.3E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_39995 f5d2574ba39aff24257cbbc893f1a052 288 Gene3D G3DSA:1.10.8.10 6 83 8.6E-12 T 13-10-2018 RAM_39995 f5d2574ba39aff24257cbbc893f1a052 288 Pfam PF05175 Methyltransferase small domain 109 198 8.9E-11 T 13-10-2018 IPR007848 Methyltransferase small domain GO:0008168 RAM_39995 f5d2574ba39aff24257cbbc893f1a052 288 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 191 197 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RAM_39995 f5d2574ba39aff24257cbbc893f1a052 288 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 27 285 1.6E-40 T 13-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 RAM_39995 f5d2574ba39aff24257cbbc893f1a052 288 Gene3D G3DSA:3.40.50.150 86 287 3.9E-50 T 13-10-2018 RAM_39995 f5d2574ba39aff24257cbbc893f1a052 288 SUPERFAMILY SSF53335 12 283 9.83E-45 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_39995 f5d2574ba39aff24257cbbc893f1a052 288 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 28 282 1.1E-64 T 13-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 RAM_39995 f5d2574ba39aff24257cbbc893f1a052 288 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 6 286 39.557 T 13-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 RAM_22180 fb12d2290df8b8748a88438ace11b71f 700 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 360 371 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RAM_22180 fb12d2290df8b8748a88438ace11b71f 700 Gene3D G3DSA:1.10.1060.10 277 394 7.3E-8 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 RAM_22180 fb12d2290df8b8748a88438ace11b71f 700 Pfam PF02754 Cysteine-rich domain 443 534 2.8E-14 T 13-10-2018 IPR004017 Cysteine-rich domain RAM_22180 fb12d2290df8b8748a88438ace11b71f 700 Pfam PF02754 Cysteine-rich domain 575 661 2.0E-18 T 13-10-2018 IPR004017 Cysteine-rich domain RAM_22180 fb12d2290df8b8748a88438ace11b71f 700 SUPERFAMILY SSF103501 25 240 9.55E-7 T 13-10-2018 IPR036197 NarG-like superfamily RAM_22180 fb12d2290df8b8748a88438ace11b71f 700 SUPERFAMILY SSF46548 276 388 2.09E-21 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 RAM_22180 fb12d2290df8b8748a88438ace11b71f 700 Pfam PF13183 4Fe-4S dicluster domain 288 374 2.4E-13 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RAM_18780 ce794465591161bc91992e9c2c92c572 143 Gene3D G3DSA:3.90.1010.20 52 143 4.0E-7 T 13-10-2018 RAM_18780 ce794465591161bc91992e9c2c92c572 143 Pfam PF04205 FMN-binding domain 66 138 4.9E-9 T 13-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 RAM_18780 ce794465591161bc91992e9c2c92c572 143 SMART SM00900 64 141 1.6E-13 T 13-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 RAM_33635 47648e5b0c00b86020623a109a995f0f 335 SUPERFAMILY SSF53706 1 191 7.85E-41 T 13-10-2018 RAM_33635 47648e5b0c00b86020623a109a995f0f 335 Gene3D G3DSA:3.40.50.740 1 124 5.4E-44 T 13-10-2018 RAM_33635 47648e5b0c00b86020623a109a995f0f 335 Gene3D G3DSA:2.40.40.20 176 308 3.0E-41 T 13-10-2018 RAM_33635 47648e5b0c00b86020623a109a995f0f 335 Pfam PF01568 Molydopterin dinucleotide binding domain 186 302 6.0E-28 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 RAM_33635 47648e5b0c00b86020623a109a995f0f 335 Pfam PF00384 Molybdopterin oxidoreductase 2 56 3.8E-14 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_33635 47648e5b0c00b86020623a109a995f0f 335 SUPERFAMILY SSF50692 160 309 8.14E-38 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily RAM_16265 af18b923c027f6e86480810c9724ebe5 464 SUPERFAMILY SSF56112 21 336 6.61E-67 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_16265 af18b923c027f6e86480810c9724ebe5 464 SUPERFAMILY SSF49384 360 451 3.28E-25 T 13-10-2018 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily GO:0030246 RAM_16265 af18b923c027f6e86480810c9724ebe5 464 Gene3D G3DSA:2.60.40.290 359 461 5.7E-27 T 13-10-2018 IPR012291 CBM2, carbohydrate-binding domain superfamily GO:0004553|GO:0030247 RAM_16265 af18b923c027f6e86480810c9724ebe5 464 Pfam PF00069 Protein kinase domain 25 273 1.4E-44 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_16265 af18b923c027f6e86480810c9724ebe5 464 ProSitePatterns PS00109 Tyrosine protein kinases specific active-site signature. 147 159 - T 13-10-2018 IPR008266 Tyrosine-protein kinase, active site GO:0004672|GO:0006468 RAM_16265 af18b923c027f6e86480810c9724ebe5 464 Gene3D G3DSA:3.30.200.20 14 107 2.7E-27 T 13-10-2018 RAM_16265 af18b923c027f6e86480810c9724ebe5 464 Pfam PF00553 Cellulose binding domain 365 452 1.4E-23 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_16265 af18b923c027f6e86480810c9724ebe5 464 SMART SM00637 365 460 2.4E-24 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_16265 af18b923c027f6e86480810c9724ebe5 464 Gene3D G3DSA:1.10.510.10 111 283 5.6E-42 T 13-10-2018 RAM_24125 75c541bd850a21cec3366d28d7be22d3 113 Gene3D G3DSA:1.10.10.10 1 112 1.7E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_24125 75c541bd850a21cec3366d28d7be22d3 113 SUPERFAMILY SSF46785 2 96 1.5E-27 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_24125 75c541bd850a21cec3366d28d7be22d3 113 Pfam PF01638 HxlR-like helix-turn-helix 8 95 1.2E-23 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type RAM_30465 ef350efa3ef4f1770a35269796414dd7 183 Pfam PF01794 Ferric reductase like transmembrane component 12 134 3.7E-9 T 13-10-2018 IPR013130 Ferric reductase transmembrane component-like domain RAM_44660 296b2a7226802c0ce7e10f1399df6698 318 SUPERFAMILY SSF55846 37 213 1.31E-37 T 13-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 RAM_44660 296b2a7226802c0ce7e10f1399df6698 318 Gene3D G3DSA:3.40.80.10 33 214 6.0E-41 T 13-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 RAM_44660 296b2a7226802c0ce7e10f1399df6698 318 Gene3D G3DSA:1.10.101.10 222 304 8.1E-9 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 RAM_44660 296b2a7226802c0ce7e10f1399df6698 318 Pfam PF01471 Putative peptidoglycan binding domain 236 278 4.3E-5 T 13-10-2018 IPR002477 Peptidoglycan binding-like RAM_44660 296b2a7226802c0ce7e10f1399df6698 318 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 59 198 3.6E-15 T 13-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 RAM_44660 296b2a7226802c0ce7e10f1399df6698 318 SUPERFAMILY SSF47090 225 279 3.4E-8 T 13-10-2018 IPR036365 PGBD-like superfamily RAM_13150 810f2ddf46f6dac053e8cc6e8e561c9f 452 SMART SM01230 112 362 2.4E-55 T 13-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RAM_13150 810f2ddf46f6dac053e8cc6e8e561c9f 452 Gene3D G3DSA:3.30.590.10 109 450 1.2E-84 T 13-10-2018 RAM_13150 810f2ddf46f6dac053e8cc6e8e561c9f 452 SUPERFAMILY SSF55931 112 437 7.36E-67 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 RAM_13150 810f2ddf46f6dac053e8cc6e8e561c9f 452 Gene3D G3DSA:3.10.20.70 14 107 2.7E-6 T 13-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RAM_13150 810f2ddf46f6dac053e8cc6e8e561c9f 452 Pfam PF00120 Glutamine synthetase, catalytic domain 114 435 3.1E-60 T 13-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RAM_25690 b2c7db5f9aa14cb3574aa361c513258f 545 Gene3D G3DSA:3.40.50.300 10 316 5.9E-57 T 13-10-2018 RAM_25690 b2c7db5f9aa14cb3574aa361c513258f 545 SUPERFAMILY SSF52540 360 543 6.29E-36 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_25690 b2c7db5f9aa14cb3574aa361c513258f 545 Pfam PF00005 ABC transporter 367 495 1.0E-15 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_25690 b2c7db5f9aa14cb3574aa361c513258f 545 Pfam PF00005 ABC transporter 22 187 6.3E-23 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_25690 b2c7db5f9aa14cb3574aa361c513258f 545 Gene3D G3DSA:3.40.50.300 317 545 2.0E-39 T 13-10-2018 RAM_25690 b2c7db5f9aa14cb3574aa361c513258f 545 SMART SM00382 374 541 7.0E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_25690 b2c7db5f9aa14cb3574aa361c513258f 545 SMART SM00382 29 232 4.8E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_25690 b2c7db5f9aa14cb3574aa361c513258f 545 ProSitePatterns PS00211 ABC transporters family signature. 159 173 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_25690 b2c7db5f9aa14cb3574aa361c513258f 545 SUPERFAMILY SSF52540 5 249 8.6E-43 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_43060 f32fc7797b589ffc44b2879bc2b9d08e 277 Gene3D G3DSA:2.40.100.10 168 277 1.4E-45 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily RAM_43060 f32fc7797b589ffc44b2879bc2b9d08e 277 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 3 276 9.3E-81 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B RAM_43060 f32fc7797b589ffc44b2879bc2b9d08e 277 SMART SM00797 24 277 9.2E-94 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B RAM_43060 f32fc7797b589ffc44b2879bc2b9d08e 277 SUPERFAMILY SSF50891 170 276 4.17E-14 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily RAM_43060 f32fc7797b589ffc44b2879bc2b9d08e 277 Pfam PF02626 Carboxyltransferase domain, subdomain A and B 25 275 7.5E-82 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B RAM_05135 f504121eea25d5ffbfaa33230b4d6072 361 SUPERFAMILY SSF53756 18 355 3.35E-55 T 13-10-2018 RAM_05135 f504121eea25d5ffbfaa33230b4d6072 361 Pfam PF13692 Glycosyl transferases group 1 200 324 5.7E-20 T 13-10-2018 RAM_05135 f504121eea25d5ffbfaa33230b4d6072 361 Pfam PF13439 Glycosyltransferase Family 4 20 179 3.7E-9 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 RAM_05135 f504121eea25d5ffbfaa33230b4d6072 361 Gene3D G3DSA:3.40.50.2000 20 189 3.9E-9 T 13-10-2018 RAM_05135 f504121eea25d5ffbfaa33230b4d6072 361 Gene3D G3DSA:3.40.50.2000 190 356 7.7E-32 T 13-10-2018 RAM_13820 a8deafafb395361f93a09f40545245c5 219 ProSitePatterns PS01081 TetR-type HTH domain signature. 23 54 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RAM_13820 a8deafafb395361f93a09f40545245c5 219 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 55 1.4E-18 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_13820 a8deafafb395361f93a09f40545245c5 219 SUPERFAMILY SSF46689 3 72 1.8E-20 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_13820 a8deafafb395361f93a09f40545245c5 219 Gene3D G3DSA:1.10.357.10 3 216 1.7E-79 T 13-10-2018 RAM_13820 a8deafafb395361f93a09f40545245c5 219 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 32 55 6.1E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_13820 a8deafafb395361f93a09f40545245c5 219 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 11 24 6.1E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_13820 a8deafafb395361f93a09f40545245c5 219 SUPERFAMILY SSF48498 78 217 1.11E-46 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_34745 ba9aee07c3a4a627b0e346a6e9bdea20 1077 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 359 369 - T 13-10-2018 IPR022398 Peptidase S8, subtilisin, His-active site RAM_34745 ba9aee07c3a4a627b0e346a6e9bdea20 1077 Gene3D G3DSA:2.60.120.380 912 1010 6.7E-6 T 13-10-2018 RAM_34745 ba9aee07c3a4a627b0e346a6e9bdea20 1077 Pfam PF00082 Subtilase family 180 606 6.9E-55 T 13-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RAM_34745 ba9aee07c3a4a627b0e346a6e9bdea20 1077 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 185 195 - T 13-10-2018 IPR023827 Peptidase S8, subtilisin, Asp-active site RAM_34745 ba9aee07c3a4a627b0e346a6e9bdea20 1077 Gene3D G3DSA:3.40.50.200 289 620 1.0E-64 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RAM_34745 ba9aee07c3a4a627b0e346a6e9bdea20 1077 Gene3D G3DSA:3.40.50.200 165 256 1.9E-6 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RAM_34745 ba9aee07c3a4a627b0e346a6e9bdea20 1077 PRINTS PR00723 Subtilisin serine protease family (S8) signature 180 199 5.1E-13 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related RAM_34745 ba9aee07c3a4a627b0e346a6e9bdea20 1077 PRINTS PR00723 Subtilisin serine protease family (S8) signature 355 368 5.1E-13 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related RAM_34745 ba9aee07c3a4a627b0e346a6e9bdea20 1077 PRINTS PR00723 Subtilisin serine protease family (S8) signature 550 566 5.1E-13 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related RAM_34745 ba9aee07c3a4a627b0e346a6e9bdea20 1077 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 551 561 - T 13-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site RAM_34745 ba9aee07c3a4a627b0e346a6e9bdea20 1077 SUPERFAMILY SSF52743 170 613 5.89E-52 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RAM_04995 fb6942d7bc6a37115406a8f3285d32a1 427 Gene3D G3DSA:3.30.565.10 267 413 1.3E-25 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_04995 fb6942d7bc6a37115406a8f3285d32a1 427 SMART SM00304 149 201 1.5E-4 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_04995 fb6942d7bc6a37115406a8f3285d32a1 427 SUPERFAMILY SSF55874 268 410 5.5E-25 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_04995 fb6942d7bc6a37115406a8f3285d32a1 427 PRINTS PR00344 Bacterial sensor protein C-terminal signature 373 391 3.6E-10 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_04995 fb6942d7bc6a37115406a8f3285d32a1 427 PRINTS PR00344 Bacterial sensor protein C-terminal signature 363 373 3.6E-10 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_04995 fb6942d7bc6a37115406a8f3285d32a1 427 PRINTS PR00344 Bacterial sensor protein C-terminal signature 345 359 3.6E-10 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_04995 fb6942d7bc6a37115406a8f3285d32a1 427 Gene3D G3DSA:1.10.287.130 153 266 1.3E-15 T 13-10-2018 RAM_04995 fb6942d7bc6a37115406a8f3285d32a1 427 Pfam PF00672 HAMP domain 149 192 1.9E-7 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_04995 fb6942d7bc6a37115406a8f3285d32a1 427 SMART SM00387 308 411 1.4E-25 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_04995 fb6942d7bc6a37115406a8f3285d32a1 427 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 310 403 5.2E-15 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_04995 fb6942d7bc6a37115406a8f3285d32a1 427 SUPERFAMILY SSF47384 186 263 4.51E-8 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RAM_10405 4193894680119aacd9ab1714cc60c2f6 162 Gene3D G3DSA:1.10.1220.10 102 144 6.7E-6 T 13-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 RAM_10405 4193894680119aacd9ab1714cc60c2f6 162 SUPERFAMILY SSF47598 100 149 6.99E-10 T 13-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 RAM_22670 8a7bbb12b7f0c29422eec62c2a295cd3 362 Gene3D G3DSA:3.30.450.90 3 107 1.6E-24 T 13-10-2018 RAM_22670 8a7bbb12b7f0c29422eec62c2a295cd3 362 SUPERFAMILY SSF52540 8 341 5.78E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_22670 8a7bbb12b7f0c29422eec62c2a295cd3 362 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 10 349 1.1E-131 T 13-10-2018 IPR006321 Pilus retraction protein PilT GO:0005524 RAM_22670 8a7bbb12b7f0c29422eec62c2a295cd3 362 Pfam PF00437 Type II/IV secretion system protein 128 268 1.3E-37 T 13-10-2018 IPR001482 Type II/IV secretion system protein RAM_22670 8a7bbb12b7f0c29422eec62c2a295cd3 362 Gene3D G3DSA:3.40.50.300 108 356 5.2E-95 T 13-10-2018 RAM_22670 8a7bbb12b7f0c29422eec62c2a295cd3 362 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 200 214 - T 13-10-2018 IPR001482 Type II/IV secretion system protein RAM_22670 8a7bbb12b7f0c29422eec62c2a295cd3 362 SMART SM00382 129 263 1.7E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_26045 283f7f69d4ed413bf507a0b749824315 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 74 85 3.1E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_26045 283f7f69d4ed413bf507a0b749824315 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 3.1E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_26045 283f7f69d4ed413bf507a0b749824315 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 127 135 3.1E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_26045 283f7f69d4ed413bf507a0b749824315 257 Pfam PF00106 short chain dehydrogenase 4 193 3.4E-35 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_26045 283f7f69d4ed413bf507a0b749824315 257 PIRSF PIRSF000126 1 246 3.4E-56 T 13-10-2018 RAM_26045 283f7f69d4ed413bf507a0b749824315 257 SUPERFAMILY SSF51735 3 220 4.03E-49 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_26045 283f7f69d4ed413bf507a0b749824315 257 Gene3D G3DSA:3.40.50.720 2 245 9.4E-52 T 13-10-2018 RAM_26045 283f7f69d4ed413bf507a0b749824315 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 2.7E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_26045 283f7f69d4ed413bf507a0b749824315 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 121 137 2.7E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_26045 283f7f69d4ed413bf507a0b749824315 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 2.7E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_26045 283f7f69d4ed413bf507a0b749824315 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 74 85 2.7E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_26045 283f7f69d4ed413bf507a0b749824315 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 2.7E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_08145 e309e7e2f53a1bfddc53ad445e91d2ac 842 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 593 605 - T 13-10-2018 IPR035090 Phosphorylase pyridoxal-phosphate attachment site KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 RAM_08145 e309e7e2f53a1bfddc53ad445e91d2ac 842 Pfam PF00343 Carbohydrate phosphorylase 125 170 3.5E-6 T 13-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 RAM_08145 e309e7e2f53a1bfddc53ad445e91d2ac 842 Pfam PF00343 Carbohydrate phosphorylase 266 615 8.5E-19 T 13-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 RAM_08145 e309e7e2f53a1bfddc53ad445e91d2ac 842 SUPERFAMILY SSF53756 4 728 7.85E-194 T 13-10-2018 RAM_08145 e309e7e2f53a1bfddc53ad445e91d2ac 842 Pfam PF11897 Protein of unknown function (DUF3417) 13 120 1.6E-33 T 13-10-2018 IPR024517 Glycogen phosphorylase, domain of unknown function DUF3417 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238 RAM_08145 e309e7e2f53a1bfddc53ad445e91d2ac 842 Gene3D G3DSA:3.40.50.2000 438 637 2.7E-35 T 13-10-2018 RAM_08145 e309e7e2f53a1bfddc53ad445e91d2ac 842 TIGRFAM TIGR02094 more_P_ylases: alpha-glucan phosphorylases 107 703 1.7E-225 T 13-10-2018 IPR011834 Alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238 RAM_08145 e309e7e2f53a1bfddc53ad445e91d2ac 842 Gene3D G3DSA:3.40.50.2000 249 422 1.9E-13 T 13-10-2018 RAM_08145 e309e7e2f53a1bfddc53ad445e91d2ac 842 Gene3D G3DSA:3.40.50.2000 117 182 3.1E-11 T 13-10-2018 RAM_08145 e309e7e2f53a1bfddc53ad445e91d2ac 842 PIRSF PIRSF000460 1 791 5.5E-248 T 13-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 RAM_36655 142b3f0b15c224130fb289745e52b5d4 310 Gene3D G3DSA:3.50.30.50 40 310 1.3E-23 T 13-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 RAM_36655 142b3f0b15c224130fb289745e52b5d4 310 Pfam PF04199 Putative cyclase 53 241 3.3E-22 T 13-10-2018 IPR007325 Kynurenine formamidase/cyclase-like GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 RAM_36655 142b3f0b15c224130fb289745e52b5d4 310 SUPERFAMILY SSF102198 49 309 1.03E-22 T 13-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 RAM_17515 6f1e654f3ee75f9549f0fb78b6226e72 285 SUPERFAMILY SSF49482 48 257 3.27E-47 T 13-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 RAM_17515 6f1e654f3ee75f9549f0fb78b6226e72 285 Pfam PF00775 Dioxygenase 75 131 1.0E-6 T 13-10-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 RAM_17515 6f1e654f3ee75f9549f0fb78b6226e72 285 Gene3D G3DSA:2.60.130.10 25 253 1.0E-49 T 13-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 RAM_22610 0f47ff281e214b1c3270d3a42f75f371 962 SUPERFAMILY SSF51445 32 383 1.34E-91 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_22610 0f47ff281e214b1c3270d3a42f75f371 962 Gene3D G3DSA:2.60.120.260 812 962 1.0E-45 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_22610 0f47ff281e214b1c3270d3a42f75f371 962 Pfam PF01301 Glycosyl hydrolases family 35 40 383 4.7E-89 T 13-10-2018 IPR031330 Glycoside hydrolase 35, catalytic domain KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_22610 0f47ff281e214b1c3270d3a42f75f371 962 Pfam PF13364 Beta-galactosidase jelly roll domain 818 929 5.6E-28 T 13-10-2018 IPR025300 Beta-galactosidase jelly roll domain KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024096|Reactome: R-HSA-2206308|Reactome: R-HSA-4085001|Reactome: R-HSA-6798695 RAM_22610 0f47ff281e214b1c3270d3a42f75f371 962 Pfam PF13364 Beta-galactosidase jelly roll domain 655 772 2.4E-22 T 13-10-2018 IPR025300 Beta-galactosidase jelly roll domain KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024096|Reactome: R-HSA-2206308|Reactome: R-HSA-4085001|Reactome: R-HSA-6798695 RAM_22610 0f47ff281e214b1c3270d3a42f75f371 962 PRINTS PR00742 Glycosyl hydrolase family 35 signature 121 140 3.6E-28 T 13-10-2018 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_22610 0f47ff281e214b1c3270d3a42f75f371 962 PRINTS PR00742 Glycosyl hydrolase family 35 signature 66 84 3.6E-28 T 13-10-2018 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_22610 0f47ff281e214b1c3270d3a42f75f371 962 PRINTS PR00742 Glycosyl hydrolase family 35 signature 335 350 3.6E-28 T 13-10-2018 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_22610 0f47ff281e214b1c3270d3a42f75f371 962 PRINTS PR00742 Glycosyl hydrolase family 35 signature 718 734 3.6E-28 T 13-10-2018 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_22610 0f47ff281e214b1c3270d3a42f75f371 962 PRINTS PR00742 Glycosyl hydrolase family 35 signature 44 61 3.6E-28 T 13-10-2018 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_22610 0f47ff281e214b1c3270d3a42f75f371 962 PRINTS PR00742 Glycosyl hydrolase family 35 signature 690 704 3.6E-28 T 13-10-2018 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_22610 0f47ff281e214b1c3270d3a42f75f371 962 PRINTS PR00742 Glycosyl hydrolase family 35 signature 354 370 3.6E-28 T 13-10-2018 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_22610 0f47ff281e214b1c3270d3a42f75f371 962 PRINTS PR00742 Glycosyl hydrolase family 35 signature 176 191 3.6E-28 T 13-10-2018 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_22610 0f47ff281e214b1c3270d3a42f75f371 962 SUPERFAMILY SSF49785 805 950 2.19E-34 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_22610 0f47ff281e214b1c3270d3a42f75f371 962 SMART SM01029 389 562 2.3E-52 T 13-10-2018 IPR018954 Beta-galactosidase, domain 2 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_22610 0f47ff281e214b1c3270d3a42f75f371 962 Gene3D G3DSA:3.20.20.80 27 391 6.5E-133 T 13-10-2018 RAM_22610 0f47ff281e214b1c3270d3a42f75f371 962 Gene3D G3DSA:2.60.120.260 649 811 1.6E-46 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_22610 0f47ff281e214b1c3270d3a42f75f371 962 Pfam PF10435 Beta-galactosidase, domain 2 398 562 1.3E-25 T 13-10-2018 IPR018954 Beta-galactosidase, domain 2 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_22610 0f47ff281e214b1c3270d3a42f75f371 962 SUPERFAMILY SSF117100 562 628 4.58E-9 T 13-10-2018 IPR036833 Beta-galactosidase, domain 3 superfamily KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_22610 0f47ff281e214b1c3270d3a42f75f371 962 Gene3D G3DSA:2.102.20.10 392 562 1.7E-28 T 13-10-2018 IPR037110 Beta-galactosidase, domain 2 superfamily KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_22610 0f47ff281e214b1c3270d3a42f75f371 962 SUPERFAMILY SSF49785 634 798 1.17E-31 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_22610 0f47ff281e214b1c3270d3a42f75f371 962 SUPERFAMILY SSF51011 401 544 5.68E-28 T 13-10-2018 RAM_20630 ecd7b23cae05c65537c7ac320bf36419 179 Pfam PF13563 2'-5' RNA ligase superfamily 24 162 1.5E-19 T 13-10-2018 RAM_20630 ecd7b23cae05c65537c7ac320bf36419 179 Gene3D G3DSA:3.90.1140.10 11 179 4.9E-21 T 13-10-2018 RAM_20630 ecd7b23cae05c65537c7ac320bf36419 179 SUPERFAMILY SSF55144 12 177 3.66E-16 T 13-10-2018 IPR009097 Cyclic phosphodiesterase RAM_23655 0cda638ca5498fbd254813d3094895be 1040 Gene3D G3DSA:2.70.98.10 166 494 5.0E-245 T 13-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 RAM_23655 0cda638ca5498fbd254813d3094895be 1040 Gene3D G3DSA:3.30.2080.10 429 897 5.0E-245 T 13-10-2018 RAM_23655 0cda638ca5498fbd254813d3094895be 1040 TIGRFAM TIGR01180 aman2_put: putative alpha-1,2-mannosidase 162 896 3.9E-141 T 13-10-2018 IPR005887 Alpha-1,2-mannosidase, putative RAM_23655 0cda638ca5498fbd254813d3094895be 1040 SUPERFAMILY SSF48208 400 876 4.76E-17 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_23655 0cda638ca5498fbd254813d3094895be 1040 Gene3D G3DSA:2.60.120.260 908 1039 4.1E-6 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_23655 0cda638ca5498fbd254813d3094895be 1040 Pfam PF07971 Glycosyl hydrolase family 92 373 893 2.0E-149 T 13-10-2018 IPR012939 Glycosyl hydrolase family 92 RAM_23655 0cda638ca5498fbd254813d3094895be 1040 Gene3D G3DSA:1.20.1610.10 589 767 5.0E-245 T 13-10-2018 RAM_23655 0cda638ca5498fbd254813d3094895be 1040 Gene3D G3DSA:1.20.1050.60 495 588 5.0E-245 T 13-10-2018 RAM_17135 342279f2d4a2ae59b62851a06faefb70 324 Pfam PF00756 Putative esterase 53 312 1.7E-34 T 13-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 RAM_17135 342279f2d4a2ae59b62851a06faefb70 324 SUPERFAMILY SSF53474 43 321 7.75E-38 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_17135 342279f2d4a2ae59b62851a06faefb70 324 Gene3D G3DSA:3.40.50.1820 15 324 1.0E-83 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_10345 f81e80bd05219afeada15088c17a6141 389 SUPERFAMILY SSF56014 282 369 3.92E-11 T 13-10-2018 RAM_10345 f81e80bd05219afeada15088c17a6141 389 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 22 373 33.867 T 13-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 RAM_10345 f81e80bd05219afeada15088c17a6141 389 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 24 366 4.0E-131 T 13-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 RAM_10345 f81e80bd05219afeada15088c17a6141 389 Gene3D G3DSA:3.30.413.10 278 378 3.9E-36 T 13-10-2018 RAM_10345 f81e80bd05219afeada15088c17a6141 389 SUPERFAMILY SSF51717 52 225 1.88E-10 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_10345 f81e80bd05219afeada15088c17a6141 389 PIRSF PIRSF004640 18 378 5.8E-146 T 13-10-2018 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 RAM_10345 f81e80bd05219afeada15088c17a6141 389 Pfam PF04551 GcpE protein 27 367 2.3E-136 T 13-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 RAM_10345 f81e80bd05219afeada15088c17a6141 389 Gene3D G3DSA:3.20.20.20 19 277 7.9E-108 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_15520 c7c9820acb6056c82e141c6ba2237f1d 140 SUPERFAMILY SSF55874 36 136 1.57E-15 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_15520 c7c9820acb6056c82e141c6ba2237f1d 140 Gene3D G3DSA:3.30.565.10 14 138 1.3E-19 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_15520 c7c9820acb6056c82e141c6ba2237f1d 140 SMART SM00387 40 140 0.0029 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_15520 c7c9820acb6056c82e141c6ba2237f1d 140 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 41 135 7.9E-11 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_47300 5bbe41ba7048e981af900c44287e86e1 183 SUPERFAMILY SSF46689 3 73 8.48E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_47300 5bbe41ba7048e981af900c44287e86e1 183 Gene3D G3DSA:1.10.357.10 1 183 6.1E-32 T 13-10-2018 RAM_47300 5bbe41ba7048e981af900c44287e86e1 183 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 59 4.2E-14 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_47300 5bbe41ba7048e981af900c44287e86e1 183 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 3.1E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_47300 5bbe41ba7048e981af900c44287e86e1 183 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 3.1E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_39460 61b914bd860393d8d77f051ca0cc2b20 864 SUPERFAMILY SSF55874 497 615 6.02E-17 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_39460 61b914bd860393d8d77f051ca0cc2b20 864 Gene3D G3DSA:3.30.565.10 474 616 2.0E-12 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_39460 61b914bd860393d8d77f051ca0cc2b20 864 Pfam PF08376 Nitrate and nitrite sensing 49 270 7.3E-22 T 13-10-2018 IPR013587 Nitrate/nitrite sensing protein RAM_39460 61b914bd860393d8d77f051ca0cc2b20 864 SMART SM00387 504 617 1.8E-4 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_39460 61b914bd860393d8d77f051ca0cc2b20 864 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 507 612 1.8E-7 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_02870 1113f075a6620f6ffff1a89474b26fc7 438 SUPERFAMILY SSF53383 4 409 2.12E-81 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_02870 1113f075a6620f6ffff1a89474b26fc7 438 Gene3D G3DSA:3.90.1150.10 13 403 8.2E-119 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_02870 1113f075a6620f6ffff1a89474b26fc7 438 Gene3D G3DSA:3.40.640.10 74 315 8.2E-119 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_02870 1113f075a6620f6ffff1a89474b26fc7 438 Pfam PF00202 Aminotransferase class-III 39 337 2.0E-42 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RAM_04830 d5e86d2e37a8b8b94db3256b0035a5e5 216 Gene3D G3DSA:3.40.50.12740 2 210 3.5E-68 T 13-10-2018 RAM_04830 d5e86d2e37a8b8b94db3256b0035a5e5 216 ProSitePatterns PS00622 LuxR-type HTH domain signature. 164 191 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_04830 d5e86d2e37a8b8b94db3256b0035a5e5 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 164 2.0E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_04830 d5e86d2e37a8b8b94db3256b0035a5e5 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 180 2.0E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_04830 d5e86d2e37a8b8b94db3256b0035a5e5 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 192 2.0E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_04830 d5e86d2e37a8b8b94db3256b0035a5e5 216 SMART SM00421 147 204 1.3E-22 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_04830 d5e86d2e37a8b8b94db3256b0035a5e5 216 Pfam PF00072 Response regulator receiver domain 4 115 4.0E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_04830 d5e86d2e37a8b8b94db3256b0035a5e5 216 Pfam PF00196 Bacterial regulatory proteins, luxR family 151 203 4.2E-16 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_04830 d5e86d2e37a8b8b94db3256b0035a5e5 216 SMART SM00448 2 114 6.0E-32 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_04830 d5e86d2e37a8b8b94db3256b0035a5e5 216 SUPERFAMILY SSF52172 1 175 1.39E-34 T 13-10-2018 IPR011006 CheY-like superfamily RAM_46365 fd03e0a03bf6997fb6e992af366871c3 111 Gene3D G3DSA:3.30.1050.40 1 111 4.6E-49 T 13-10-2018 RAM_46365 fd03e0a03bf6997fb6e992af366871c3 111 SUPERFAMILY SSF55718 32 109 5.89E-8 T 13-10-2018 IPR036527 SCP2 sterol-binding domain superfamily RAM_13985 a48bf62c1d978ccca9b05b1409d1bd40 198 Pfam PF14103 Domain of unknown function (DUF4276) 8 190 9.9E-17 T 13-10-2018 IPR025455 Protein of unknown function DUF4276 RAM_44940 0baf923e1c698c7c12b5daf22dfd22df 422 SUPERFAMILY SSF53383 8 420 7.13E-165 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_44940 0baf923e1c698c7c12b5daf22dfd22df 422 Gene3D G3DSA:3.90.1150.10 14 390 1.4E-170 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_44940 0baf923e1c698c7c12b5daf22dfd22df 422 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 224 240 - T 13-10-2018 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 RAM_44940 0baf923e1c698c7c12b5daf22dfd22df 422 Gene3D G3DSA:3.40.640.10 39 289 1.4E-170 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_44940 0baf923e1c698c7c12b5daf22dfd22df 422 PIRSF PIRSF000412 2 421 1.4E-160 T 13-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 RAM_44940 0baf923e1c698c7c12b5daf22dfd22df 422 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 9 419 49.125 T 13-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 RAM_44940 0baf923e1c698c7c12b5daf22dfd22df 422 Pfam PF00464 Serine hydroxymethyltransferase 11 386 1.4E-153 T 13-10-2018 IPR039429 Serine hydroxymethyltransferase-like domain KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 RAM_13695 7580c8d96a44129280caa9d009653ad1 576 Gene3D G3DSA:1.10.274.90 3 116 6.3E-21 T 13-10-2018 RAM_13695 7580c8d96a44129280caa9d009653ad1 576 Gene3D G3DSA:1.10.510.40 356 556 4.6E-44 T 13-10-2018 RAM_13695 7580c8d96a44129280caa9d009653ad1 576 Pfam PF06276 Ferric iron reductase FhuF-like transporter 387 539 5.2E-29 T 13-10-2018 IPR022770 Ferric iron reductase FhuF domain RAM_13695 7580c8d96a44129280caa9d009653ad1 576 Pfam PF04183 IucA / IucC family 130 365 6.1E-70 T 13-10-2018 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal GO:0019290 RAM_24965 67a2e23f7a380f18c82b5894976a415b 562 SUPERFAMILY SSF52540 201 502 2.6E-50 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_24965 67a2e23f7a380f18c82b5894976a415b 562 Hamap MF_02112 Proteasome-associated ATPase [mpa]. 23 541 50.343 T 13-10-2018 IPR022482 Proteasome ATPase GO:0000502|GO:0010498|GO:0016887|GO:0019941 RAM_24965 67a2e23f7a380f18c82b5894976a415b 562 SMART SM00382 239 394 5.8E-22 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_24965 67a2e23f7a380f18c82b5894976a415b 562 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 243 392 2.9E-48 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RAM_24965 67a2e23f7a380f18c82b5894976a415b 562 Gene3D G3DSA:2.40.50.140 122 201 3.2E-22 T 13-10-2018 RAM_24965 67a2e23f7a380f18c82b5894976a415b 562 Gene3D G3DSA:1.10.8.60 393 413 3.8E-61 T 13-10-2018 RAM_24965 67a2e23f7a380f18c82b5894976a415b 562 Gene3D G3DSA:1.20.5.170 20 61 5.1E-16 T 13-10-2018 RAM_24965 67a2e23f7a380f18c82b5894976a415b 562 Gene3D G3DSA:2.40.50.140 62 121 6.7E-28 T 13-10-2018 RAM_24965 67a2e23f7a380f18c82b5894976a415b 562 TIGRFAM TIGR03689 pup_AAA: proteasome ATPase 21 540 5.8E-255 T 13-10-2018 IPR022482 Proteasome ATPase GO:0000502|GO:0010498|GO:0016887|GO:0019941 RAM_24965 67a2e23f7a380f18c82b5894976a415b 562 Gene3D G3DSA:3.40.50.300 202 392 3.8E-61 T 13-10-2018 RAM_24965 67a2e23f7a380f18c82b5894976a415b 562 ProSitePatterns PS00674 AAA-protein family signature. 362 380 - T 13-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 RAM_24965 67a2e23f7a380f18c82b5894976a415b 562 Pfam PF16450 Proteasomal ATPase OB/ID domain 65 200 1.1E-50 T 13-10-2018 IPR032501 Proteasomal ATPase, OB/ID domain RAM_24250 bbcde14eafdb8c5ec26b94262cce8cd5 86 SUPERFAMILY SSF47336 7 79 1.31E-10 T 13-10-2018 IPR036736 ACP-like superfamily RAM_24250 bbcde14eafdb8c5ec26b94262cce8cd5 86 Gene3D G3DSA:1.10.1200.10 2 80 1.0E-15 T 13-10-2018 IPR036736 ACP-like superfamily RAM_03460 4996fa6fb2ace24322d3e1d19789fa07 218 Gene3D G3DSA:2.40.50.620 37 101 9.3E-18 T 13-10-2018 RAM_03460 4996fa6fb2ace24322d3e1d19789fa07 218 ProSitePatterns PS00474 Ribosomal protein L3 signature. 106 129 - T 13-10-2018 IPR019926 Ribosomal protein L3, conserved site RAM_03460 4996fa6fb2ace24322d3e1d19789fa07 218 Gene3D G3DSA:2.40.30.10 124 215 1.6E-15 T 13-10-2018 RAM_03460 4996fa6fb2ace24322d3e1d19789fa07 218 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 8 209 2.4E-89 T 13-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_03460 4996fa6fb2ace24322d3e1d19789fa07 218 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 6 212 39.722 T 13-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_03460 4996fa6fb2ace24322d3e1d19789fa07 218 SUPERFAMILY SSF50447 5 214 1.06E-80 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RAM_03460 4996fa6fb2ace24322d3e1d19789fa07 218 Pfam PF00297 Ribosomal protein L3 99 187 2.4E-16 T 13-10-2018 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_19350 61d50c26325583c5f1e3fab53ebd00f9 1858 Gene3D G3DSA:2.180.10.10 1020 1615 1.4E-46 T 13-10-2018 RAM_19350 61d50c26325583c5f1e3fab53ebd00f9 1858 Pfam PF05593 RHS Repeat 1100 1133 1.2E-6 T 13-10-2018 IPR031325 RHS repeat RAM_19350 61d50c26325583c5f1e3fab53ebd00f9 1858 Pfam PF05593 RHS Repeat 1058 1092 1.1E-7 T 13-10-2018 IPR031325 RHS repeat RAM_19350 61d50c26325583c5f1e3fab53ebd00f9 1858 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1100 1131 8.4E-7 T 13-10-2018 IPR006530 YD repeat RAM_19350 61d50c26325583c5f1e3fab53ebd00f9 1858 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1058 1095 2.1E-7 T 13-10-2018 IPR006530 YD repeat RAM_19350 61d50c26325583c5f1e3fab53ebd00f9 1858 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 1537 1615 2.5E-15 T 13-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 RAM_11340 473a156614008b19c541b9451e69c4c7 387 Pfam PF00082 Subtilase family 62 305 4.9E-13 T 13-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RAM_11340 473a156614008b19c541b9451e69c4c7 387 PRINTS PR00723 Subtilisin serine protease family (S8) signature 254 270 4.2E-7 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related RAM_11340 473a156614008b19c541b9451e69c4c7 387 PRINTS PR00723 Subtilisin serine protease family (S8) signature 62 81 4.2E-7 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related RAM_11340 473a156614008b19c541b9451e69c4c7 387 PRINTS PR00723 Subtilisin serine protease family (S8) signature 96 109 4.2E-7 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related RAM_11340 473a156614008b19c541b9451e69c4c7 387 SUPERFAMILY SSF52743 44 315 4.97E-43 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RAM_11340 473a156614008b19c541b9451e69c4c7 387 Gene3D G3DSA:3.40.50.200 24 318 2.0E-46 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RAM_06295 24c69fcdc758be867f56ae69bba6bb19 446 Gene3D G3DSA:1.10.510.10 281 314 1.2E-6 T 13-10-2018 RAM_06295 24c69fcdc758be867f56ae69bba6bb19 446 Pfam PF03109 ABC1 family 122 237 8.0E-33 T 13-10-2018 IPR004147 UbiB domain RAM_06295 24c69fcdc758be867f56ae69bba6bb19 446 SUPERFAMILY SSF56112 106 315 1.84E-30 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_47045 5206771b37f931bfdb0a1010beae8182 737 Pfam PF02754 Cysteine-rich domain 602 688 8.6E-18 T 13-10-2018 IPR004017 Cysteine-rich domain RAM_47045 5206771b37f931bfdb0a1010beae8182 737 Pfam PF02754 Cysteine-rich domain 472 563 3.6E-15 T 13-10-2018 IPR004017 Cysteine-rich domain RAM_47045 5206771b37f931bfdb0a1010beae8182 737 Pfam PF13183 4Fe-4S dicluster domain 296 404 1.9E-13 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RAM_47045 5206771b37f931bfdb0a1010beae8182 737 SUPERFAMILY SSF46548 282 418 5.06E-22 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 RAM_47045 5206771b37f931bfdb0a1010beae8182 737 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 390 401 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RAM_29345 caae83515cdb63205d8e8408169f4097 375 Gene3D G3DSA:1.10.540.10 4 104 4.8E-24 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_29345 caae83515cdb63205d8e8408169f4097 375 Gene3D G3DSA:2.40.110.10 123 218 3.2E-14 T 13-10-2018 RAM_29345 caae83515cdb63205d8e8408169f4097 375 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 214 365 8.2E-15 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_29345 caae83515cdb63205d8e8408169f4097 375 SUPERFAMILY SSF56645 7 213 7.46E-42 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_29345 caae83515cdb63205d8e8408169f4097 375 PIRSF PIRSF016578 3 372 7.9E-18 T 13-10-2018 RAM_29345 caae83515cdb63205d8e8408169f4097 375 Gene3D G3DSA:1.20.140.10 226 366 1.8E-20 T 13-10-2018 RAM_29345 caae83515cdb63205d8e8408169f4097 375 SUPERFAMILY SSF47203 220 369 4.83E-22 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_29345 caae83515cdb63205d8e8408169f4097 375 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 109 197 1.9E-10 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RAM_29345 caae83515cdb63205d8e8408169f4097 375 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 99 1.6E-14 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_01370 f88073d0418c01bfc9592a5e75bc5485 257 Pfam PF01925 Sulfite exporter TauE/SafE 10 249 2.1E-41 T 13-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 RAM_04175 e862e787dd2c1ce8b095859206a751cf 195 Gene3D G3DSA:2.160.20.100 12 195 3.9E-56 T 13-10-2018 RAM_04175 e862e787dd2c1ce8b095859206a751cf 195 SUPERFAMILY SSF141571 19 194 1.18E-43 T 13-10-2018 RAM_04175 e862e787dd2c1ce8b095859206a751cf 195 Pfam PF13599 Pentapeptide repeats (9 copies) 22 102 2.1E-10 T 13-10-2018 IPR001646 Pentapeptide repeat RAM_04175 e862e787dd2c1ce8b095859206a751cf 195 Pfam PF00805 Pentapeptide repeats (8 copies) 141 176 4.8E-9 T 13-10-2018 IPR001646 Pentapeptide repeat RAM_33250 4fb1197ed5df592520d7681b8ad57674 96 SUPERFAMILY SSF52091 3 79 3.34E-8 T 13-10-2018 IPR036513 STAS domain superfamily RAM_33250 4fb1197ed5df592520d7681b8ad57674 96 Gene3D G3DSA:3.30.750.24 1 89 3.6E-8 T 13-10-2018 IPR036513 STAS domain superfamily RAM_33250 4fb1197ed5df592520d7681b8ad57674 96 Pfam PF13466 STAS domain 13 79 1.0E-7 T 13-10-2018 IPR002645 STAS domain RAM_09995 3d2c7c6c9526d0f61e37610ca9d00d3d 302 SUPERFAMILY SSF47823 5 95 2.16E-13 T 13-10-2018 RAM_09995 3d2c7c6c9526d0f61e37610ca9d00d3d 302 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 3 302 51.994 T 13-10-2018 IPR023009 Tyrosine recombinase XerC/XerD RAM_09995 3d2c7c6c9526d0f61e37610ca9d00d3d 302 SUPERFAMILY SSF56349 126 300 4.71E-48 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RAM_09995 3d2c7c6c9526d0f61e37610ca9d00d3d 302 Gene3D G3DSA:1.10.150.130 2 95 1.5E-14 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal RAM_09995 3d2c7c6c9526d0f61e37610ca9d00d3d 302 Pfam PF00589 Phage integrase family 115 287 1.7E-41 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RAM_09995 3d2c7c6c9526d0f61e37610ca9d00d3d 302 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 6 86 8.9E-15 T 13-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 RAM_09995 3d2c7c6c9526d0f61e37610ca9d00d3d 302 Gene3D G3DSA:1.10.443.10 111 296 6.9E-55 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 RAM_16210 76b07e00e99abb5b418faf05bf346271 96 SUPERFAMILY SSF46785 12 85 1.04E-9 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_16210 76b07e00e99abb5b418faf05bf346271 96 Gene3D G3DSA:1.10.10.10 6 94 1.8E-9 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_17185 e7c48c49fe87da3e75b521b31cad6434 287 SUPERFAMILY SSF100950 3 270 4.28E-71 T 13-10-2018 IPR037171 NagB/RpiA transferase-like RAM_17185 e7c48c49fe87da3e75b521b31cad6434 287 Gene3D G3DSA:3.40.1080.10 7 280 1.1E-74 T 13-10-2018 RAM_17185 e7c48c49fe87da3e75b521b31cad6434 287 Pfam PF01144 Coenzyme A transferase 6 205 4.0E-38 T 13-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 RAM_17185 e7c48c49fe87da3e75b521b31cad6434 287 SMART SM00882 5 227 4.5E-34 T 13-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 RAM_17185 e7c48c49fe87da3e75b521b31cad6434 287 Gene3D G3DSA:3.30.30.40 115 152 1.1E-74 T 13-10-2018 RAM_16830 0f4e40a26c51e9c40770c0cf92492bf7 1096 Gene3D G3DSA:3.30.450.30 964 1088 3.9E-35 T 13-10-2018 RAM_16830 0f4e40a26c51e9c40770c0cf92492bf7 1096 Gene3D G3DSA:3.30.565.10 468 617 3.2E-11 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_16830 0f4e40a26c51e9c40770c0cf92492bf7 1096 SMART SM00387 505 620 2.4E-9 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_16830 0f4e40a26c51e9c40770c0cf92492bf7 1096 SMART SM00960 968 1058 4.0E-26 T 13-10-2018 IPR004942 Roadblock/LAMTOR2 domain RAM_16830 0f4e40a26c51e9c40770c0cf92492bf7 1096 Pfam PF03259 Roadblock/LC7 domain 968 1058 4.3E-19 T 13-10-2018 IPR004942 Roadblock/LAMTOR2 domain RAM_16830 0f4e40a26c51e9c40770c0cf92492bf7 1096 SUPERFAMILY SSF103196 960 1085 2.09E-29 T 13-10-2018 RAM_16830 0f4e40a26c51e9c40770c0cf92492bf7 1096 Pfam PF00672 HAMP domain 324 390 4.1E-8 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_16830 0f4e40a26c51e9c40770c0cf92492bf7 1096 SMART SM00304 324 393 1.4E-4 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_16830 0f4e40a26c51e9c40770c0cf92492bf7 1096 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 510 617 2.2E-7 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_16830 0f4e40a26c51e9c40770c0cf92492bf7 1096 SUPERFAMILY SSF55874 507 617 1.96E-14 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_32230 85596586c83cbf65d926eb922fed9948 478 Pfam PF04055 Radical SAM superfamily 182 354 4.7E-22 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RAM_32230 85596586c83cbf65d926eb922fed9948 478 Gene3D G3DSA:3.80.30.20 173 410 9.9E-67 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe RAM_32230 85596586c83cbf65d926eb922fed9948 478 Pfam PF00919 Uncharacterized protein family UPF0004 13 107 5.7E-29 T 13-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 RAM_32230 85596586c83cbf65d926eb922fed9948 478 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 180 200 - T 13-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 RAM_32230 85596586c83cbf65d926eb922fed9948 478 SUPERFAMILY SSF102114 171 400 1.83E-44 T 13-10-2018 RAM_32230 85596586c83cbf65d926eb922fed9948 478 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 13 467 9.8E-102 T 13-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 RAM_32230 85596586c83cbf65d926eb922fed9948 478 Gene3D G3DSA:2.40.50.140 411 476 2.9E-8 T 13-10-2018 RAM_32230 85596586c83cbf65d926eb922fed9948 478 SMART SM00729 176 393 9.9E-39 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 RAM_32230 85596586c83cbf65d926eb922fed9948 478 Hamap MF_01865 Ribosomal protein S12 methylthiotransferase RimO [rimO]. 12 472 56.596 T 13-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 RAM_32230 85596586c83cbf65d926eb922fed9948 478 Gene3D G3DSA:3.40.50.12160 12 137 2.9E-34 T 13-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily RAM_32230 85596586c83cbf65d926eb922fed9948 478 TIGRFAM TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO 13 469 1.8E-121 T 13-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 RAM_43555 772f50f956e8b7883533129a9b52a78f 596 Pfam PF11228 Protein of unknown function (DUF3027) 37 227 8.9E-80 T 13-10-2018 IPR021391 Protein of unknown function DUF3027 RAM_30280 dcda96cb7adc6308acb7d02ac793bcdc 929 SUPERFAMILY SSF46894 3 91 2.24E-12 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_30280 dcda96cb7adc6308acb7d02ac793bcdc 929 PRINTS PR00364 Disease resistance protein signature 275 290 1.1E-5 T 13-10-2018 RAM_30280 dcda96cb7adc6308acb7d02ac793bcdc 929 PRINTS PR00364 Disease resistance protein signature 354 368 1.1E-5 T 13-10-2018 RAM_30280 dcda96cb7adc6308acb7d02ac793bcdc 929 PRINTS PR00364 Disease resistance protein signature 442 456 1.1E-5 T 13-10-2018 RAM_30280 dcda96cb7adc6308acb7d02ac793bcdc 929 SUPERFAMILY SSF52540 251 503 2.57E-20 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_30280 dcda96cb7adc6308acb7d02ac793bcdc 929 Gene3D G3DSA:1.25.40.10 644 922 1.2E-37 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_30280 dcda96cb7adc6308acb7d02ac793bcdc 929 SUPERFAMILY SSF48452 665 836 6.07E-17 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_30280 dcda96cb7adc6308acb7d02ac793bcdc 929 Pfam PF00931 NB-ARC domain 266 501 1.4E-8 T 13-10-2018 IPR002182 NB-ARC GO:0043531 Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-6798695|Reactome: R-HSA-6803207|Reactome: R-HSA-8953750 RAM_30280 dcda96cb7adc6308acb7d02ac793bcdc 929 SUPERFAMILY SSF48452 94 253 2.66E-20 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_30280 dcda96cb7adc6308acb7d02ac793bcdc 929 SMART SM00028 763 796 13.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_30280 dcda96cb7adc6308acb7d02ac793bcdc 929 SMART SM00028 879 912 27.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_30280 dcda96cb7adc6308acb7d02ac793bcdc 929 SMART SM00028 723 756 190.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_30280 dcda96cb7adc6308acb7d02ac793bcdc 929 SMART SM00028 803 836 0.58 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_30280 dcda96cb7adc6308acb7d02ac793bcdc 929 Gene3D G3DSA:1.25.40.10 97 260 8.3E-35 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_30280 dcda96cb7adc6308acb7d02ac793bcdc 929 Pfam PF13424 Tetratricopeptide repeat 764 834 3.6E-10 T 13-10-2018 RAM_30280 dcda96cb7adc6308acb7d02ac793bcdc 929 SMART SM01043 98 236 2.1E-28 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_30280 dcda96cb7adc6308acb7d02ac793bcdc 929 Gene3D G3DSA:1.10.10.10 1 93 5.5E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_30280 dcda96cb7adc6308acb7d02ac793bcdc 929 Pfam PF00486 Transcriptional regulatory protein, C terminal 24 89 1.4E-7 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_30280 dcda96cb7adc6308acb7d02ac793bcdc 929 Pfam PF03704 Bacterial transcriptional activator domain 98 236 7.2E-24 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_30280 dcda96cb7adc6308acb7d02ac793bcdc 929 SUPERFAMILY SSF48452 804 908 3.67E-12 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_30280 dcda96cb7adc6308acb7d02ac793bcdc 929 SMART SM00862 16 91 4.3E-8 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_08620 c4eddd129a758ea618a26295c90a7dda 534 Gene3D G3DSA:3.20.20.70 15 338 9.3E-95 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_08620 c4eddd129a758ea618a26295c90a7dda 534 SMART SM00917 387 530 3.6E-38 T 13-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 RAM_08620 c4eddd129a758ea618a26295c90a7dda 534 SUPERFAMILY SSF51569 11 305 1.54E-71 T 13-10-2018 RAM_08620 c4eddd129a758ea618a26295c90a7dda 534 TIGRFAM TIGR00977 citramal_synth: citramalate synthase 16 529 1.1E-174 T 13-10-2018 IPR005675 Citramalate synthase GO:0019752|GO:0046912 KEGG: 00290+2.3.1.182|KEGG: 00660+2.3.1.182|MetaCyc: PWY-5101 RAM_08620 c4eddd129a758ea618a26295c90a7dda 534 SUPERFAMILY SSF110921 409 526 8.24E-25 T 13-10-2018 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 RAM_08620 c4eddd129a758ea618a26295c90a7dda 534 Pfam PF00682 HMGL-like 16 266 1.9E-42 T 13-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 RAM_08620 c4eddd129a758ea618a26295c90a7dda 534 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 22 38 - T 13-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 RAM_08620 c4eddd129a758ea618a26295c90a7dda 534 Gene3D G3DSA:3.30.160.270 356 528 1.3E-7 T 13-10-2018 RAM_08620 c4eddd129a758ea618a26295c90a7dda 534 Pfam PF08502 LeuA allosteric (dimerisation) domain 387 527 1.8E-27 T 13-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 RAM_15675 c71ab9e0e966985833f172f971f8e274 262 Pfam PF00733 Asparagine synthase 7 67 2.2E-4 T 13-10-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 RAM_15675 c71ab9e0e966985833f172f971f8e274 262 TIGRFAM TIGR00268 TIGR00268: TIGR00268 family protein 13 249 1.7E-51 T 13-10-2018 IPR005232 Pyridinium-3,5-bisthiocarboxylic acid mononucleotide synthase LarE GO:0016783 RAM_15675 c71ab9e0e966985833f172f971f8e274 262 PIRSF PIRSF006661 9 262 9.4E-69 T 13-10-2018 IPR005232 Pyridinium-3,5-bisthiocarboxylic acid mononucleotide synthase LarE GO:0016783 RAM_15675 c71ab9e0e966985833f172f971f8e274 262 Gene3D G3DSA:3.40.50.620 9 160 8.1E-20 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAM_15675 c71ab9e0e966985833f172f971f8e274 262 SUPERFAMILY SSF52402 12 196 1.94E-32 T 13-10-2018 RAM_03330 5503c0dfbe14b5ce15624936c4a2bb0f 303 SMART SM00861 8 173 2.6E-22 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain RAM_03330 5503c0dfbe14b5ce15624936c4a2bb0f 303 Pfam PF02779 Transketolase, pyrimidine binding domain 9 168 2.2E-28 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain RAM_03330 5503c0dfbe14b5ce15624936c4a2bb0f 303 Gene3D G3DSA:3.40.50.970 6 180 6.2E-41 T 13-10-2018 RAM_03330 5503c0dfbe14b5ce15624936c4a2bb0f 303 Gene3D G3DSA:3.40.50.920 181 303 2.9E-10 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RAM_03330 5503c0dfbe14b5ce15624936c4a2bb0f 303 SUPERFAMILY SSF52518 8 167 5.4E-36 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_03330 5503c0dfbe14b5ce15624936c4a2bb0f 303 SUPERFAMILY SSF52922 178 302 9.58E-12 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RAM_29100 d1f1639ffb42089df35546fafac853e9 187 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 62 1.1E-12 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_29100 d1f1639ffb42089df35546fafac853e9 187 Gene3D G3DSA:1.10.357.10 67 184 2.1E-28 T 13-10-2018 RAM_29100 d1f1639ffb42089df35546fafac853e9 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 2.5E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_29100 d1f1639ffb42089df35546fafac853e9 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 2.5E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_29100 d1f1639ffb42089df35546fafac853e9 187 SUPERFAMILY SSF48498 78 184 4.45E-25 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_29100 d1f1639ffb42089df35546fafac853e9 187 Gene3D G3DSA:1.10.10.60 3 62 1.6E-21 T 13-10-2018 RAM_29100 d1f1639ffb42089df35546fafac853e9 187 SUPERFAMILY SSF46689 2 66 1.44E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_12750 71d3d2d2aa202d35a5146f4771a39bb2 283 SUPERFAMILY SSF53474 28 272 2.72E-43 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_12750 71d3d2d2aa202d35a5146f4771a39bb2 283 Gene3D G3DSA:3.40.50.1820 23 276 3.1E-43 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_12750 71d3d2d2aa202d35a5146f4771a39bb2 283 Pfam PF00561 alpha/beta hydrolase fold 41 141 4.0E-16 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_37770 e4f122941fac4b8503393e986cd04b73 294 Pfam PF13855 Leucine rich repeat 213 271 4.8E-8 T 13-10-2018 IPR001611 Leucine-rich repeat GO:0005515 RAM_37770 e4f122941fac4b8503393e986cd04b73 294 SMART SM00369 189 212 0.004 T 13-10-2018 IPR003591 Leucine-rich repeat, typical subtype RAM_37770 e4f122941fac4b8503393e986cd04b73 294 SMART SM00369 235 258 10.0 T 13-10-2018 IPR003591 Leucine-rich repeat, typical subtype RAM_37770 e4f122941fac4b8503393e986cd04b73 294 SMART SM00364 189 208 0.21 T 13-10-2018 RAM_37770 e4f122941fac4b8503393e986cd04b73 294 SMART SM00364 212 231 6.4 T 13-10-2018 RAM_37770 e4f122941fac4b8503393e986cd04b73 294 SUPERFAMILY SSF52058 156 273 3.91E-25 T 13-10-2018 RAM_37770 e4f122941fac4b8503393e986cd04b73 294 Gene3D G3DSA:3.80.10.10 125 278 5.2E-30 T 13-10-2018 IPR032675 Leucine-rich repeat domain superfamily RAM_16580 84a510044387851375a93e4f36e188e0 250 Gene3D G3DSA:1.10.150.240 48 113 8.2E-51 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 RAM_16580 84a510044387851375a93e4f36e188e0 250 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 158 174 3.3E-6 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_16580 84a510044387851375a93e4f36e188e0 250 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 127 140 3.3E-6 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_16580 84a510044387851375a93e4f36e188e0 250 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 176 196 3.3E-6 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_16580 84a510044387851375a93e4f36e188e0 250 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 33 44 3.3E-6 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_16580 84a510044387851375a93e4f36e188e0 250 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 116 208 7.2E-9 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_16580 84a510044387851375a93e4f36e188e0 250 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 161 213 1.8E-7 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_16580 84a510044387851375a93e4f36e188e0 250 Gene3D G3DSA:3.40.50.1000 37 233 8.2E-51 T 13-10-2018 IPR023214 HAD superfamily RAM_16580 84a510044387851375a93e4f36e188e0 250 SUPERFAMILY SSF56784 34 244 2.85E-49 T 13-10-2018 IPR036412 HAD-like superfamily RAM_16580 84a510044387851375a93e4f36e188e0 250 Pfam PF13419 Haloacid dehalogenase-like hydrolase 36 214 2.1E-28 T 13-10-2018 RAM_45970 c39b8431e3aac62684abbfbf6c368236 142 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 1 142 44.422 T 13-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 RAM_45970 c39b8431e3aac62684abbfbf6c368236 142 SUPERFAMILY SSF53927 3 142 2.13E-42 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 RAM_45970 c39b8431e3aac62684abbfbf6c368236 142 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 45 83 - T 13-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 RAM_45970 c39b8431e3aac62684abbfbf6c368236 142 Pfam PF14437 MafB19-like deaminase 8 139 6.2E-21 T 13-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 RAM_45970 c39b8431e3aac62684abbfbf6c368236 142 Gene3D G3DSA:3.40.140.10 1 142 7.2E-44 T 13-10-2018 RAM_11935 59e4ea3b7840cd25e2f7e07b32bbc862 420 SUPERFAMILY SSF103473 20 402 9.29E-31 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_11935 59e4ea3b7840cd25e2f7e07b32bbc862 420 Gene3D G3DSA:1.20.1250.20 16 398 3.5E-22 T 13-10-2018 RAM_03655 d8d294ff149f65499fd6fadee8dc56fd 358 SUPERFAMILY SSF140453 58 131 1.57E-5 T 13-10-2018 IPR036689 ESAT-6-like superfamily RAM_03655 d8d294ff149f65499fd6fadee8dc56fd 358 Gene3D G3DSA:1.10.287.1060 55 136 2.3E-5 T 13-10-2018 RAM_06870 c8dd0506a622047051a73347f776e38c 278 Pfam PF00809 Pterin binding enzyme 9 258 3.1E-63 T 13-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_06870 c8dd0506a622047051a73347f776e38c 278 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 8 271 1.4E-76 T 13-10-2018 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 RAM_06870 c8dd0506a622047051a73347f776e38c 278 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 8 23 - T 13-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_06870 c8dd0506a622047051a73347f776e38c 278 SUPERFAMILY SSF51717 3 271 2.09E-73 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_06870 c8dd0506a622047051a73347f776e38c 278 Gene3D G3DSA:3.20.20.20 1 277 4.8E-83 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_34300 ede8242f040c377939aa6412ea8db2a0 326 Pfam PF06144 DNA polymerase III, delta subunit 13 175 7.4E-10 T 13-10-2018 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 RAM_34300 ede8242f040c377939aa6412ea8db2a0 326 SUPERFAMILY SSF48019 203 321 1.38E-13 T 13-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 RAM_34300 ede8242f040c377939aa6412ea8db2a0 326 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 9 319 2.7E-28 T 13-10-2018 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 RAM_34300 ede8242f040c377939aa6412ea8db2a0 326 Gene3D G3DSA:1.20.272.10 201 324 4.1E-16 T 13-10-2018 RAM_34300 ede8242f040c377939aa6412ea8db2a0 326 Gene3D G3DSA:3.40.50.300 2 126 1.1E-12 T 13-10-2018 RAM_34300 ede8242f040c377939aa6412ea8db2a0 326 SUPERFAMILY SSF52540 6 190 1.65E-7 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_46660 4f285d9c7f5634ccd892e4fdf1220f2a 428 Gene3D G3DSA:1.10.300.10 101 200 3.2E-96 T 13-10-2018 RAM_46660 4f285d9c7f5634ccd892e4fdf1220f2a 428 Gene3D G3DSA:3.90.170.10 266 428 4.0E-67 T 13-10-2018 RAM_46660 4f285d9c7f5634ccd892e4fdf1220f2a 428 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 428 198.468 T 13-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 RAM_46660 4f285d9c7f5634ccd892e4fdf1220f2a 428 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 132 143 - T 13-10-2018 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 RAM_46660 4f285d9c7f5634ccd892e4fdf1220f2a 428 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 5 425 1.2E-161 T 13-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 RAM_46660 4f285d9c7f5634ccd892e4fdf1220f2a 428 Gene3D G3DSA:3.40.440.10 7 256 3.2E-96 T 13-10-2018 RAM_46660 4f285d9c7f5634ccd892e4fdf1220f2a 428 Pfam PF00709 Adenylosuccinate synthetase 4 422 2.9E-174 T 13-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 RAM_46660 4f285d9c7f5634ccd892e4fdf1220f2a 428 SUPERFAMILY SSF52540 1 426 4.14E-167 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_46660 4f285d9c7f5634ccd892e4fdf1220f2a 428 SMART SM00788 3 423 2.3E-271 T 13-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 RAM_46660 4f285d9c7f5634ccd892e4fdf1220f2a 428 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 10 17 - T 13-10-2018 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 RAM_27110 3dcc50ba475ed8f43e69a42c88e6f3f3 381 Gene3D G3DSA:3.40.50.2000 171 348 1.0E-118 T 13-10-2018 RAM_27110 3dcc50ba475ed8f43e69a42c88e6f3f3 381 Pfam PF13692 Glycosyl transferases group 1 190 330 1.1E-27 T 13-10-2018 RAM_27110 3dcc50ba475ed8f43e69a42c88e6f3f3 381 SUPERFAMILY SSF53756 3 365 2.27E-74 T 13-10-2018 RAM_27110 3dcc50ba475ed8f43e69a42c88e6f3f3 381 Pfam PF13439 Glycosyltransferase Family 4 14 173 2.6E-26 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 RAM_27110 3dcc50ba475ed8f43e69a42c88e6f3f3 381 Gene3D G3DSA:3.40.50.2000 11 361 1.0E-118 T 13-10-2018 RAM_02825 23f7fabe2c80c6380f93e7382d4e8024 636 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 560 9.4E-123 T 13-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 RAM_02825 23f7fabe2c80c6380f93e7382d4e8024 636 SUPERFAMILY SSF52402 240 621 3.26E-66 T 13-10-2018 RAM_02825 23f7fabe2c80c6380f93e7382d4e8024 636 Pfam PF13537 Glutamine amidotransferase domain 48 165 3.0E-41 T 13-10-2018 IPR017932 Glutamine amidotransferase type 2 domain RAM_02825 23f7fabe2c80c6380f93e7382d4e8024 636 PIRSF PIRSF001589 1 636 2.9E-143 T 13-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 RAM_02825 23f7fabe2c80c6380f93e7382d4e8024 636 Gene3D G3DSA:3.60.20.10 14 181 5.1E-56 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RAM_02825 23f7fabe2c80c6380f93e7382d4e8024 636 Pfam PF00733 Asparagine synthase 240 627 1.2E-89 T 13-10-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 RAM_02825 23f7fabe2c80c6380f93e7382d4e8024 636 SUPERFAMILY SSF56235 1 223 4.72E-59 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RAM_21685 70f7a389f131d896a8df634b0460822a 120 SUPERFAMILY SSF54593 1 117 1.21E-12 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_21685 70f7a389f131d896a8df634b0460822a 120 Gene3D G3DSA:3.10.180.10 1 120 3.9E-30 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_46455 fdbaab0e1bf57ea28430162e893899d7 227 SUPERFAMILY SSF88713 23 136 1.61E-10 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RAM_46455 fdbaab0e1bf57ea28430162e893899d7 227 Pfam PF10096 Uncharacterized protein conserved in bacteria (DUF2334) 44 134 2.5E-13 T 13-10-2018 IPR018763 Protein of unknown function DUF2334 RAM_46455 fdbaab0e1bf57ea28430162e893899d7 227 Gene3D G3DSA:3.20.20.370 12 222 3.1E-11 T 13-10-2018 RAM_42680 6847b216f27da548e210c194af74bfa4 425 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 193 331 5.4E-25 T 13-10-2018 IPR001453 MoaB/Mog domain RAM_42680 6847b216f27da548e210c194af74bfa4 425 Gene3D G3DSA:2.40.340.10 346 418 4.4E-22 T 13-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RAM_42680 6847b216f27da548e210c194af74bfa4 425 SMART SM00852 196 335 2.1E-25 T 13-10-2018 IPR001453 MoaB/Mog domain RAM_42680 6847b216f27da548e210c194af74bfa4 425 Gene3D G3DSA:3.40.980.10 191 334 2.1E-90 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily RAM_42680 6847b216f27da548e210c194af74bfa4 425 SUPERFAMILY SSF63882 19 192 1.44E-44 T 13-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RAM_42680 6847b216f27da548e210c194af74bfa4 425 SUPERFAMILY SSF53218 193 340 9.55E-32 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily RAM_42680 6847b216f27da548e210c194af74bfa4 425 Pfam PF03453 MoeA N-terminal region (domain I and II) 21 183 1.0E-38 T 13-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RAM_42680 6847b216f27da548e210c194af74bfa4 425 Pfam PF03454 MoeA C-terminal region (domain IV) 349 421 3.2E-21 T 13-10-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RAM_42680 6847b216f27da548e210c194af74bfa4 425 Gene3D G3DSA:2.170.190.11 62 157 2.1E-90 T 13-10-2018 RAM_42680 6847b216f27da548e210c194af74bfa4 425 SUPERFAMILY SSF63867 344 421 6.15E-19 T 13-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RAM_42680 6847b216f27da548e210c194af74bfa4 425 Pfam PF00994 Probable molybdopterin binding domain 197 334 7.8E-18 T 13-10-2018 IPR001453 MoaB/Mog domain RAM_42680 6847b216f27da548e210c194af74bfa4 425 Gene3D G3DSA:3.90.105.10 40 190 2.1E-90 T 13-10-2018 RAM_04560 e1447a2fe4f8278f5d18699cc67c56f3 421 Gene3D G3DSA:1.10.630.10 95 368 7.6E-19 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_04560 e1447a2fe4f8278f5d18699cc67c56f3 421 SUPERFAMILY SSF48264 106 351 1.31E-21 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_19485 7b3dbcf7a46ff624eec84c60c1429715 242 Pfam PF00005 ABC transporter 27 167 1.4E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_19485 7b3dbcf7a46ff624eec84c60c1429715 242 Gene3D G3DSA:3.40.50.300 7 239 5.3E-53 T 13-10-2018 RAM_19485 7b3dbcf7a46ff624eec84c60c1429715 242 SUPERFAMILY SSF52540 10 230 5.54E-52 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_19485 7b3dbcf7a46ff624eec84c60c1429715 242 SMART SM00382 36 219 1.3E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_33405 734705a7050487233b1d55b3fc64176a 240 Gene3D G3DSA:3.90.25.10 90 210 8.2E-65 T 13-10-2018 RAM_33405 734705a7050487233b1d55b3fc64176a 240 Gene3D G3DSA:3.40.50.720 1 219 8.2E-65 T 13-10-2018 RAM_33405 734705a7050487233b1d55b3fc64176a 240 SUPERFAMILY SSF51735 1 207 1.07E-39 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_33405 734705a7050487233b1d55b3fc64176a 240 Pfam PF13460 NAD(P)H-binding 1 134 2.4E-11 T 13-10-2018 IPR016040 NAD(P)-binding domain RAM_28565 6368996783ca2ee8d2fcbf9ce68d428a 961 Gene3D G3DSA:1.50.10.10 55 767 1.4E-93 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 RAM_28565 6368996783ca2ee8d2fcbf9ce68d428a 961 SMART SM00458 823 959 2.8E-16 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_28565 6368996783ca2ee8d2fcbf9ce68d428a 961 SUPERFAMILY SSF50370 821 959 4.19E-41 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_28565 6368996783ca2ee8d2fcbf9ce68d428a 961 SUPERFAMILY SSF48208 296 750 2.13E-42 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_28565 6368996783ca2ee8d2fcbf9ce68d428a 961 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 905 960 1.1E-12 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_28565 6368996783ca2ee8d2fcbf9ce68d428a 961 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 820 898 3.5E-19 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_28565 6368996783ca2ee8d2fcbf9ce68d428a 961 Gene3D G3DSA:2.60.40.1180 325 778 1.4E-93 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta RAM_28565 6368996783ca2ee8d2fcbf9ce68d428a 961 Gene3D G3DSA:2.70.98.50 59 324 1.4E-93 T 13-10-2018 RAM_28565 6368996783ca2ee8d2fcbf9ce68d428a 961 Gene3D G3DSA:2.80.10.50 823 961 2.1E-38 T 13-10-2018 RAM_28565 6368996783ca2ee8d2fcbf9ce68d428a 961 Pfam PF14498 Glycosyl hydrolase family 65, N-terminal domain 48 280 7.5E-38 T 13-10-2018 IPR027414 Glycosyl hydrolase family 95, N-terminal domain KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807 RAM_04905 5aac29b92b69d88b70bb8667718a5adc 272 SUPERFAMILY SSF53335 19 245 2.09E-40 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_04905 5aac29b92b69d88b70bb8667718a5adc 272 Pfam PF08241 Methyltransferase domain 50 144 2.9E-20 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 RAM_04905 5aac29b92b69d88b70bb8667718a5adc 272 Gene3D G3DSA:3.40.50.150 3 256 9.8E-42 T 13-10-2018 RAM_43220 06df5d247f061fb19a8837aee06536a1 187 SUPERFAMILY SSF46689 4 63 1.25E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_43220 06df5d247f061fb19a8837aee06536a1 187 Pfam PF00440 Bacterial regulatory proteins, tetR family 6 50 4.5E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_43220 06df5d247f061fb19a8837aee06536a1 187 Gene3D G3DSA:1.10.357.10 2 187 7.2E-18 T 13-10-2018 RAM_18480 b6bba339ff9c135286ea33d5fa6ed2d4 281 PIRSF PIRSF006648 1 276 9.2E-30 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 RAM_18480 b6bba339ff9c135286ea33d5fa6ed2d4 281 Pfam PF01061 ABC-2 type transporter 28 234 2.2E-22 T 13-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 RAM_16170 8c2bbc40bccb741415f3cb8981d91022 448 SUPERFAMILY SSF103473 2 444 1.44E-60 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_16170 8c2bbc40bccb741415f3cb8981d91022 448 Gene3D G3DSA:1.20.1250.20 246 447 1.9E-16 T 13-10-2018 RAM_16170 8c2bbc40bccb741415f3cb8981d91022 448 Pfam PF07690 Major Facilitator Superfamily 8 396 1.4E-47 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_16170 8c2bbc40bccb741415f3cb8981d91022 448 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 3 400 3.9E-74 T 13-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 RAM_16170 8c2bbc40bccb741415f3cb8981d91022 448 Gene3D G3DSA:1.20.1720.10 1 190 3.3E-46 T 13-10-2018 RAM_37220 638e1b98f6b311dd6adb3089efc68223 256 SMART SM01007 22 202 5.5E-63 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal RAM_37220 638e1b98f6b311dd6adb3089efc68223 256 SUPERFAMILY SSF53639 14 221 2.35E-64 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily RAM_37220 638e1b98f6b311dd6adb3089efc68223 256 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 23 202 4.1E-46 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal RAM_37220 638e1b98f6b311dd6adb3089efc68223 256 Gene3D G3DSA:3.40.225.10 10 256 2.9E-72 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily RAM_05850 bb82363448a4418c3623d3a6d6f7de73 339 ProSitePatterns PS00893 Nudix box signature. 219 240 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RAM_05850 bb82363448a4418c3623d3a6d6f7de73 339 Pfam PF00293 NUDIX domain 184 296 6.5E-16 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RAM_05850 bb82363448a4418c3623d3a6d6f7de73 339 Gene3D G3DSA:3.90.79.10 182 338 9.5E-32 T 13-10-2018 RAM_05850 bb82363448a4418c3623d3a6d6f7de73 339 Pfam PF09297 NADH pyrophosphatase zinc ribbon domain 151 179 7.3E-6 T 13-10-2018 IPR015376 Zinc ribbon, NADH pyrophosphatase GO:0016787|GO:0046872 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381|MetaCyc: PWY-7761 RAM_05850 bb82363448a4418c3623d3a6d6f7de73 339 Gene3D G3DSA:3.90.79.20 46 180 9.4E-10 T 13-10-2018 RAM_05850 bb82363448a4418c3623d3a6d6f7de73 339 Pfam PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain 68 146 2.0E-6 T 13-10-2018 IPR015375 NADH pyrophosphatase-like, N-terminal GO:0016787 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381|MetaCyc: PWY-7761 RAM_05850 bb82363448a4418c3623d3a6d6f7de73 339 SUPERFAMILY SSF55811 134 298 1.15E-39 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RAM_12255 3d04190c85751b3d1586219b20a7e3d4 465 Pfam PF01565 FAD binding domain 43 178 6.0E-37 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RAM_12255 3d04190c85751b3d1586219b20a7e3d4 465 Gene3D G3DSA:3.30.43.10 18 95 1.4E-28 T 13-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 RAM_12255 3d04190c85751b3d1586219b20a7e3d4 465 Pfam PF08031 Berberine and berberine like 418 462 5.9E-13 T 13-10-2018 IPR012951 Berberine/berberine-like GO:0016491|GO:0050660|GO:0055114 RAM_12255 3d04190c85751b3d1586219b20a7e3d4 465 Gene3D G3DSA:3.30.465.10 110 450 9.4E-108 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 RAM_12255 3d04190c85751b3d1586219b20a7e3d4 465 SUPERFAMILY SSF55103 189 456 3.05E-6 T 13-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 RAM_12255 3d04190c85751b3d1586219b20a7e3d4 465 Gene3D G3DSA:3.40.462.20 209 422 9.4E-108 T 13-10-2018 RAM_12255 3d04190c85751b3d1586219b20a7e3d4 465 ProSitePatterns PS00862 Oxygen oxidoreductases covalent FAD-binding site. 43 76 - T 13-10-2018 IPR006093 Oxygen oxidoreductase covalent FAD-binding site GO:0016491|GO:0055114 RAM_12255 3d04190c85751b3d1586219b20a7e3d4 465 SUPERFAMILY SSF56176 17 209 1.12E-59 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RAM_34795 bf4f6e5ffec25e01dd793b6ac830ba7d 141 Gene3D G3DSA:1.10.1660.10 2 55 4.7E-13 T 13-10-2018 RAM_34795 bf4f6e5ffec25e01dd793b6ac830ba7d 141 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 6 50 1.8E-11 T 13-10-2018 IPR010093 SinI-like, DNA-binding domain GO:0003677 RAM_34795 bf4f6e5ffec25e01dd793b6ac830ba7d 141 SUPERFAMILY SSF46955 5 51 2.15E-8 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily RAM_34795 bf4f6e5ffec25e01dd793b6ac830ba7d 141 Pfam PF12728 Helix-turn-helix domain 6 50 3.6E-13 T 13-10-2018 RAM_17450 a9b7cbd33e327b259ec4c2776ac7fe95 192 Gene3D G3DSA:2.60.120.200 54 191 5.5E-6 T 13-10-2018 RAM_45410 e463f39424285d87f0a677227d802881 335 SUPERFAMILY SSF52540 18 238 3.81E-27 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_45410 e463f39424285d87f0a677227d802881 335 Pfam PF02374 Anion-transporting ATPase 17 176 4.6E-20 T 13-10-2018 IPR025723 Anion-transporting ATPase-like domain Reactome: R-HSA-381038 RAM_38945 8dce49deaf6f1530ba9474a93aef72fb 250 Gene3D G3DSA:1.10.10.10 8 79 4.9E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_38945 8dce49deaf6f1530ba9474a93aef72fb 250 SUPERFAMILY SSF55781 71 246 1.83E-41 T 13-10-2018 RAM_38945 8dce49deaf6f1530ba9474a93aef72fb 250 Pfam PF01614 Bacterial transcriptional regulator 128 243 2.5E-20 T 13-10-2018 IPR014757 Transcription regulator IclR, C-terminal RAM_38945 8dce49deaf6f1530ba9474a93aef72fb 250 Pfam PF09339 IclR helix-turn-helix domain 10 60 2.0E-12 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RAM_38945 8dce49deaf6f1530ba9474a93aef72fb 250 SMART SM00346 7 96 3.0E-13 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RAM_38945 8dce49deaf6f1530ba9474a93aef72fb 250 Gene3D G3DSA:3.30.450.40 82 250 1.3E-45 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_38945 8dce49deaf6f1530ba9474a93aef72fb 250 SUPERFAMILY SSF46785 9 77 5.01E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_09960 1f357df0372439514e27f1b7e677196c 311 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 154 166 3.8E-18 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RAM_09960 1f357df0372439514e27f1b7e677196c 311 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 205 224 3.8E-18 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RAM_09960 1f357df0372439514e27f1b7e677196c 311 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 66 82 3.8E-18 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RAM_09960 1f357df0372439514e27f1b7e677196c 311 Pfam PF10502 Signal peptidase, peptidase S26 153 248 5.8E-6 T 13-10-2018 IPR019533 Peptidase S26 RAM_09960 1f357df0372439514e27f1b7e677196c 311 ProSitePatterns PS00761 Signal peptidases I signature 3. 210 223 - T 13-10-2018 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 RAM_09960 1f357df0372439514e27f1b7e677196c 311 SUPERFAMILY SSF51306 65 257 1.41E-42 T 13-10-2018 IPR036286 LexA/Signal peptidase-like superfamily RAM_09960 1f357df0372439514e27f1b7e677196c 311 Pfam PF00717 Peptidase S24-like 73 119 3.7E-6 T 13-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C RAM_09960 1f357df0372439514e27f1b7e677196c 311 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 52 250 7.3E-37 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RAM_30780 6395ef9ed52ca7d3fb6ed4d89f1c86cd 160 PIRSF PIRSF005028 1 160 2.7E-54 T 13-10-2018 IPR026278 Potassium/proton antiporter subunit KhtT RAM_30780 6395ef9ed52ca7d3fb6ed4d89f1c86cd 160 SUPERFAMILY SSF116726 84 157 9.02E-16 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RAM_30780 6395ef9ed52ca7d3fb6ed4d89f1c86cd 160 Gene3D G3DSA:3.30.70.1450 87 159 4.7E-16 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RAM_30780 6395ef9ed52ca7d3fb6ed4d89f1c86cd 160 Pfam PF02080 TrkA-C domain 89 157 4.8E-13 T 13-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RAM_36330 ff6fc49ff78c12eb1feabadd06808b2c 508 Pfam PF05872 Bacterial protein of unknown function (DUF853) 34 505 2.0E-189 T 13-10-2018 IPR033186 Helicase HerA-like C-terminal RAM_36330 ff6fc49ff78c12eb1feabadd06808b2c 508 SUPERFAMILY SSF52540 31 397 1.9E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_36330 ff6fc49ff78c12eb1feabadd06808b2c 508 Gene3D G3DSA:3.40.50.300 12 106 4.0E-12 T 13-10-2018 RAM_36330 ff6fc49ff78c12eb1feabadd06808b2c 508 Gene3D G3DSA:3.40.50.300 204 410 3.0E-21 T 13-10-2018 RAM_18220 f95402ac9c1e951b6d47d963ff447450 433 Pfam PF08811 Protein of unknown function (DUF1800) 13 424 5.1E-92 T 13-10-2018 IPR014917 Protein of unknown function DUF1800 RAM_34735 3e6e13e0a2558edc0af737369abac108 305 SMART SM00382 31 218 7.0E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_34735 3e6e13e0a2558edc0af737369abac108 305 Pfam PF00005 ABC transporter 22 161 2.9E-23 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_34735 3e6e13e0a2558edc0af737369abac108 305 Gene3D G3DSA:3.40.50.300 1 235 1.0E-55 T 13-10-2018 RAM_34735 3e6e13e0a2558edc0af737369abac108 305 SUPERFAMILY SSF52540 6 222 1.45E-53 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_34735 3e6e13e0a2558edc0af737369abac108 305 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_06620 6a5d27724543b7cabb61f80119f3c46b 216 Pfam PF00440 Bacterial regulatory proteins, tetR family 21 67 4.0E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_06620 6a5d27724543b7cabb61f80119f3c46b 216 Gene3D G3DSA:1.10.357.10 13 215 3.4E-53 T 13-10-2018 RAM_06620 6a5d27724543b7cabb61f80119f3c46b 216 SUPERFAMILY SSF46689 8 84 4.62E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_02675 878150a8a0f2fc75db6525f682303f1d 249 Gene3D G3DSA:3.30.460.80 60 209 1.1E-46 T 13-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_02675 878150a8a0f2fc75db6525f682303f1d 249 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 108 229 4.5E-44 T 13-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_02675 878150a8a0f2fc75db6525f682303f1d 249 SUPERFAMILY SSF143243 93 245 1.83E-49 T 13-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_02675 878150a8a0f2fc75db6525f682303f1d 249 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 157 218 2.0E-19 T 13-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_02675 878150a8a0f2fc75db6525f682303f1d 249 Hamap MF_01357 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic [ndhJ]. 85 237 29.377 T 13-10-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_02675 878150a8a0f2fc75db6525f682303f1d 249 TIGRFAM TIGR01961 NuoC_fam: NADH (or F420H2) dehydrogenase, subunit C 107 228 3.0E-42 T 13-10-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_04875 7727d8803c24414b19ebf6d9100ce509 249 SUPERFAMILY SSF51735 4 241 2.7E-66 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_04875 7727d8803c24414b19ebf6d9100ce509 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 126 134 2.9E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_04875 7727d8803c24414b19ebf6d9100ce509 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 165 2.9E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_04875 7727d8803c24414b19ebf6d9100ce509 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 75 86 2.9E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_04875 7727d8803c24414b19ebf6d9100ce509 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 75 86 1.1E-35 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_04875 7727d8803c24414b19ebf6d9100ce509 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 184 1.1E-35 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_04875 7727d8803c24414b19ebf6d9100ce509 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 1.1E-35 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_04875 7727d8803c24414b19ebf6d9100ce509 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.1E-35 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_04875 7727d8803c24414b19ebf6d9100ce509 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 120 136 1.1E-35 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_04875 7727d8803c24414b19ebf6d9100ce509 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 206 226 1.1E-35 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_04875 7727d8803c24414b19ebf6d9100ce509 249 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 241 1.0E-51 T 13-10-2018 RAM_04875 7727d8803c24414b19ebf6d9100ce509 249 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 177 0.0012 T 13-10-2018 RAM_04875 7727d8803c24414b19ebf6d9100ce509 249 Gene3D G3DSA:3.40.50.720 1 247 5.4E-69 T 13-10-2018 RAM_04875 7727d8803c24414b19ebf6d9100ce509 249 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 133 161 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_10755 cc506258f2962a1f4d43a7dd7c01c69d 571 SUPERFAMILY SSF53041 28 178 1.09E-29 T 13-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 RAM_10755 cc506258f2962a1f4d43a7dd7c01c69d 571 Pfam PF13408 Recombinase zinc beta ribbon domain 313 371 1.2E-8 T 13-10-2018 IPR025827 Recombinase zinc beta ribbon domain RAM_10755 cc506258f2962a1f4d43a7dd7c01c69d 571 Gene3D G3DSA:3.40.50.1390 27 161 1.7E-34 T 13-10-2018 RAM_10755 cc506258f2962a1f4d43a7dd7c01c69d 571 Pfam PF07508 Recombinase 207 298 5.0E-8 T 13-10-2018 IPR011109 DNA-binding recombinase domain GO:0000150|GO:0003677 RAM_10755 cc506258f2962a1f4d43a7dd7c01c69d 571 ProSitePatterns PS00397 Site-specific recombinases active site. 31 39 - T 13-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 RAM_10755 cc506258f2962a1f4d43a7dd7c01c69d 571 Pfam PF00239 Resolvase, N terminal domain 28 179 1.4E-32 T 13-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 RAM_10755 cc506258f2962a1f4d43a7dd7c01c69d 571 SMART SM00857 28 180 7.2E-44 T 13-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 RAM_10755 cc506258f2962a1f4d43a7dd7c01c69d 571 Gene3D G3DSA:1.10.10.2600 165 302 2.9E-11 T 13-10-2018 IPR038109 DNA-binding recombinase domain superfamily RAM_17545 1a428f6030dc347691003e31e887a21b 748 SUPERFAMILY SSF49299 459 549 1.31E-15 T 13-10-2018 IPR035986 PKD domain superfamily RAM_17545 1a428f6030dc347691003e31e887a21b 748 Gene3D G3DSA:2.120.10.30 11 417 3.0E-63 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RAM_17545 1a428f6030dc347691003e31e887a21b 748 Gene3D G3DSA:2.60.40.10 456 549 1.3E-21 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_17545 1a428f6030dc347691003e31e887a21b 748 SUPERFAMILY SSF50952 18 456 1.83E-23 T 13-10-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 RAM_17545 1a428f6030dc347691003e31e887a21b 748 SMART SM00089 463 550 5.8E-10 T 13-10-2018 IPR022409 PKD/Chitinase domain RAM_17545 1a428f6030dc347691003e31e887a21b 748 Pfam PF07995 Glucose / Sorbosone dehydrogenase 36 190 1.7E-11 T 13-10-2018 IPR012938 Glucose/Sorbosone dehydrogenase RAM_17545 1a428f6030dc347691003e31e887a21b 748 Pfam PF07995 Glucose / Sorbosone dehydrogenase 231 408 7.0E-12 T 13-10-2018 IPR012938 Glucose/Sorbosone dehydrogenase RAM_01415 9d5d0199b83aef23e48ed47137ad988f 305 Pfam PF03466 LysR substrate binding domain 88 287 3.9E-35 T 13-10-2018 IPR005119 LysR, substrate-binding RAM_01415 9d5d0199b83aef23e48ed47137ad988f 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 62 3.2E-13 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_01415 9d5d0199b83aef23e48ed47137ad988f 305 Gene3D G3DSA:3.40.190.10 92 276 1.9E-31 T 13-10-2018 RAM_01415 9d5d0199b83aef23e48ed47137ad988f 305 Gene3D G3DSA:1.10.10.10 1 89 3.8E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_01415 9d5d0199b83aef23e48ed47137ad988f 305 SUPERFAMILY SSF46785 1 111 4.86E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_01415 9d5d0199b83aef23e48ed47137ad988f 305 Gene3D G3DSA:3.40.190.10 167 263 1.9E-31 T 13-10-2018 RAM_01415 9d5d0199b83aef23e48ed47137ad988f 305 SUPERFAMILY SSF53850 89 287 1.81E-30 T 13-10-2018 RAM_30895 555d9cca0f923def53d5df567114ea37 147 Pfam PF12802 MarR family 33 94 3.0E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_30895 555d9cca0f923def53d5df567114ea37 147 SMART SM00347 28 131 5.9E-14 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_30895 555d9cca0f923def53d5df567114ea37 147 Gene3D G3DSA:1.10.10.10 3 147 1.3E-35 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_30895 555d9cca0f923def53d5df567114ea37 147 SUPERFAMILY SSF46785 6 143 6.82E-28 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_23190 8d024400dc930847479a9cb8dd28ad34 310 Pfam PF09362 Domain of unknown function (DUF1996) 53 265 1.1E-46 T 13-10-2018 IPR018535 Domain of unknown function DUF1996 RAM_05665 05f4eeffce5f1042a73907937c148465 302 Gene3D G3DSA:3.40.50.1820 3 299 1.9E-54 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_05665 05f4eeffce5f1042a73907937c148465 302 Pfam PF12146 Serine aminopeptidase, S33 37 285 5.4E-23 T 13-10-2018 IPR022742 Serine aminopeptidase, S33 RAM_05665 05f4eeffce5f1042a73907937c148465 302 SUPERFAMILY SSF53474 10 295 6.56E-53 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_12140 d09a8846a6c9fbdaa9f1fcaefb4f9d20 837 Gene3D G3DSA:3.40.50.620 30 578 1.1E-190 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAM_12140 d09a8846a6c9fbdaa9f1fcaefb4f9d20 837 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 52 63 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 RAM_12140 d09a8846a6c9fbdaa9f1fcaefb4f9d20 837 PRINTS PR00986 Valyl-tRNA synthetase signature 498 519 1.3E-17 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 RAM_12140 d09a8846a6c9fbdaa9f1fcaefb4f9d20 837 PRINTS PR00986 Valyl-tRNA synthetase signature 380 393 1.3E-17 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 RAM_12140 d09a8846a6c9fbdaa9f1fcaefb4f9d20 837 PRINTS PR00986 Valyl-tRNA synthetase signature 45 56 1.3E-17 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 RAM_12140 d09a8846a6c9fbdaa9f1fcaefb4f9d20 837 PRINTS PR00986 Valyl-tRNA synthetase signature 255 272 1.3E-17 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 RAM_12140 d09a8846a6c9fbdaa9f1fcaefb4f9d20 837 PRINTS PR00986 Valyl-tRNA synthetase signature 529 547 1.3E-17 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 RAM_12140 d09a8846a6c9fbdaa9f1fcaefb4f9d20 837 Hamap MF_02005 Valine--tRNA ligase [valS]. 10 826 27.124 T 13-10-2018 IPR022874 Valine-tRNA ligase, type 2 GO:0004832 KEGG: 00970+6.1.1.9 RAM_12140 d09a8846a6c9fbdaa9f1fcaefb4f9d20 837 Pfam PF08264 Anticodon-binding domain of tRNA 654 794 7.7E-26 T 13-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 RAM_12140 d09a8846a6c9fbdaa9f1fcaefb4f9d20 837 SUPERFAMILY SSF50677 217 366 1.96E-32 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 RAM_12140 d09a8846a6c9fbdaa9f1fcaefb4f9d20 837 SUPERFAMILY SSF47323 629 832 5.79E-37 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 RAM_12140 d09a8846a6c9fbdaa9f1fcaefb4f9d20 837 Gene3D G3DSA:3.90.740.10 201 376 1.1E-190 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 RAM_12140 d09a8846a6c9fbdaa9f1fcaefb4f9d20 837 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 23 615 5.5E-89 T 13-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 RAM_12140 d09a8846a6c9fbdaa9f1fcaefb4f9d20 837 SUPERFAMILY SSF52374 10 617 5.42E-104 T 13-10-2018 RAM_12140 d09a8846a6c9fbdaa9f1fcaefb4f9d20 837 Gene3D G3DSA:1.10.730.10 18 782 1.1E-190 T 13-10-2018 RAM_46195 dc64773396d4b912749b54247e1f5f3a 376 SUPERFAMILY SSF53850 57 376 6.12E-81 T 13-10-2018 RAM_46195 dc64773396d4b912749b54247e1f5f3a 376 TIGRFAM TIGR00975 3a0107s03: phosphate ABC transporter, phosphate-binding protein PstS 58 375 1.2E-81 T 13-10-2018 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 RAM_46195 dc64773396d4b912749b54247e1f5f3a 376 Gene3D G3DSA:3.40.190.10 138 317 2.1E-102 T 13-10-2018 RAM_46195 dc64773396d4b912749b54247e1f5f3a 376 Pfam PF12849 PBP superfamily domain 45 346 6.1E-58 T 13-10-2018 IPR024370 PBP domain RAM_46195 dc64773396d4b912749b54247e1f5f3a 376 PIRSF PIRSF002756 7 376 1.3E-107 T 13-10-2018 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 RAM_46195 dc64773396d4b912749b54247e1f5f3a 376 Gene3D G3DSA:3.40.190.10 61 362 2.1E-102 T 13-10-2018 RAM_00075 90e026af1d902ff196c6466aca0b6a72 265 SUPERFAMILY SSF47413 11 71 6.48E-7 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_00075 90e026af1d902ff196c6466aca0b6a72 265 Gene3D G3DSA:1.10.260.40 12 75 1.6E-6 T 13-10-2018 RAM_07980 afe44cc98c4bd0068ad96662081e4049 379 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 167 312 2.5E-13 T 13-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 RAM_07980 afe44cc98c4bd0068ad96662081e4049 379 Gene3D G3DSA:3.30.70.1230 147 317 2.2E-45 T 13-10-2018 IPR029787 Nucleotide cyclase RAM_07980 afe44cc98c4bd0068ad96662081e4049 379 SUPERFAMILY SSF55073 164 314 4.4E-34 T 13-10-2018 IPR029787 Nucleotide cyclase RAM_07980 afe44cc98c4bd0068ad96662081e4049 379 Pfam PF16701 Adenylate cyclase regulatory domain 16 108 4.8E-12 T 13-10-2018 IPR032026 Adenylate cyclase regulatory domain RAM_11490 87c09cf6d2a7f3cf9db8793d5c13ef4a 186 Gene3D G3DSA:1.10.357.10 4 186 1.9E-39 T 13-10-2018 RAM_11490 87c09cf6d2a7f3cf9db8793d5c13ef4a 186 SUPERFAMILY SSF48498 77 183 4.8E-11 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_11490 87c09cf6d2a7f3cf9db8793d5c13ef4a 186 SUPERFAMILY SSF46689 3 62 2.05E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_11490 87c09cf6d2a7f3cf9db8793d5c13ef4a 186 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 59 1.1E-13 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_23285 28523e501e21dc953ade07b19ffc1427 708 SUPERFAMILY SSF52210 543 689 6.41E-28 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RAM_23285 28523e501e21dc953ade07b19ffc1427 708 Pfam PF13380 CoA binding domain 261 380 7.9E-25 T 13-10-2018 IPR003781 CoA-binding GO:0048037 RAM_23285 28523e501e21dc953ade07b19ffc1427 708 Gene3D G3DSA:3.40.50.261 379 538 7.8E-54 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RAM_23285 28523e501e21dc953ade07b19ffc1427 708 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 400 535 2.5E-49 T 13-10-2018 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain RAM_23285 28523e501e21dc953ade07b19ffc1427 708 Gene3D G3DSA:3.30.1490.20 40 117 3.0E-76 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 RAM_23285 28523e501e21dc953ade07b19ffc1427 708 SUPERFAMILY SSF56059 28 239 5.41E-39 T 13-10-2018 RAM_23285 28523e501e21dc953ade07b19ffc1427 708 Gene3D G3DSA:3.40.50.720 251 378 6.4E-44 T 13-10-2018 RAM_23285 28523e501e21dc953ade07b19ffc1427 708 Gene3D G3DSA:3.40.50.261 541 708 1.2E-36 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RAM_23285 28523e501e21dc953ade07b19ffc1427 708 SUPERFAMILY SSF51735 253 386 4.64E-36 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_23285 28523e501e21dc953ade07b19ffc1427 708 Gene3D G3DSA:3.30.470.20 22 231 3.0E-76 T 13-10-2018 RAM_23285 28523e501e21dc953ade07b19ffc1427 708 SMART SM00881 256 351 1.6E-30 T 13-10-2018 IPR003781 CoA-binding GO:0048037 RAM_23285 28523e501e21dc953ade07b19ffc1427 708 SUPERFAMILY SSF52210 381 534 9.68E-38 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RAM_23285 28523e501e21dc953ade07b19ffc1427 708 Pfam PF13549 ATP-grasp domain 13 232 2.2E-76 T 13-10-2018 RAM_36620 108fea692b92e33325761b8cd1f58fda 121 SUPERFAMILY SSF50475 1 118 9.53E-24 T 13-10-2018 RAM_36620 108fea692b92e33325761b8cd1f58fda 121 SMART SM00903 1 118 3.6E-17 T 13-10-2018 IPR002563 Flavin reductase like domain GO:0010181 RAM_36620 108fea692b92e33325761b8cd1f58fda 121 Pfam PF01613 Flavin reductase like domain 2 71 1.6E-16 T 13-10-2018 IPR002563 Flavin reductase like domain GO:0010181 RAM_36620 108fea692b92e33325761b8cd1f58fda 121 Gene3D G3DSA:2.30.110.10 1 121 5.0E-24 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_02670 e380317f3f8311af805221f22f29d753 182 Gene3D G3DSA:3.40.50.12280 2 170 6.1E-75 T 13-10-2018 RAM_02670 e380317f3f8311af805221f22f29d753 182 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 37 146 3.6E-24 T 13-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_02670 e380317f3f8311af805221f22f29d753 182 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 11 152 4.3E-70 T 13-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_02670 e380317f3f8311af805221f22f29d753 182 SUPERFAMILY SSF56770 9 155 5.49E-67 T 13-10-2018 RAM_02670 e380317f3f8311af805221f22f29d753 182 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 1 151 43.412 T 13-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_02670 e380317f3f8311af805221f22f29d753 182 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 118 134 - T 13-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_23965 a8fa0d483081e8e925cf0f270c7bcd47 838 Gene3D G3DSA:1.20.120.850 605 828 8.6E-83 T 13-10-2018 RAM_23965 a8fa0d483081e8e925cf0f270c7bcd47 838 SUPERFAMILY SSF52540 588 834 1.28E-64 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_23965 a8fa0d483081e8e925cf0f270c7bcd47 838 SMART SM00487 376 555 1.4E-24 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RAM_23965 a8fa0d483081e8e925cf0f270c7bcd47 838 SMART SM00490 696 778 1.8E-23 T 13-10-2018 IPR001650 Helicase, C-terminal RAM_23965 a8fa0d483081e8e925cf0f270c7bcd47 838 Gene3D G3DSA:3.40.50.10810 381 582 3.8E-60 T 13-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily RAM_23965 a8fa0d483081e8e925cf0f270c7bcd47 838 Pfam PF12419 SNF2 Helicase protein 208 337 6.4E-35 T 13-10-2018 IPR022138 Helicase SWF/SNF-related RAM_23965 a8fa0d483081e8e925cf0f270c7bcd47 838 Gene3D G3DSA:3.40.50.300 591 792 8.6E-83 T 13-10-2018 RAM_23965 a8fa0d483081e8e925cf0f270c7bcd47 838 SUPERFAMILY SSF52540 364 581 1.72E-53 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_23965 a8fa0d483081e8e925cf0f270c7bcd47 838 Pfam PF00176 SNF2 family N-terminal domain 399 649 4.7E-49 T 13-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 RAM_23965 a8fa0d483081e8e925cf0f270c7bcd47 838 Pfam PF00271 Helicase conserved C-terminal domain 667 778 7.5E-18 T 13-10-2018 IPR001650 Helicase, C-terminal RAM_43420 6630153c8a32a6ef15a0a6534ea58568 446 Gene3D G3DSA:3.40.710.10 6 320 1.5E-72 T 13-10-2018 RAM_43420 6630153c8a32a6ef15a0a6534ea58568 446 SUPERFAMILY SSF56601 13 313 2.05E-71 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_43420 6630153c8a32a6ef15a0a6534ea58568 446 Pfam PF00144 Beta-lactamase 16 315 2.2E-59 T 13-10-2018 IPR001466 Beta-lactamase-related RAM_33210 6436a4287f046207b0773b9eeea44697 466 SUPERFAMILY SSF103473 3 191 9.42E-38 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_33210 6436a4287f046207b0773b9eeea44697 466 Gene3D G3DSA:1.20.1250.20 253 456 9.1E-14 T 13-10-2018 RAM_33210 6436a4287f046207b0773b9eeea44697 466 SUPERFAMILY SSF103473 186 458 3.53E-24 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_33210 6436a4287f046207b0773b9eeea44697 466 Pfam PF07690 Major Facilitator Superfamily 14 408 1.9E-39 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_33210 6436a4287f046207b0773b9eeea44697 466 Gene3D G3DSA:1.20.1720.10 10 199 4.4E-40 T 13-10-2018 RAM_26075 c335907d37e7132778640cd3f73232eb 70 Pfam PF11387 Protein of unknown function (DUF2795) 13 57 1.2E-8 T 13-10-2018 IPR021527 Protein of unknown function DUF2795 RAM_01425 1061d5e3dada8f7a41ba4740a5ce8ad3 223 Pfam PF07510 Protein of unknown function (DUF1524) 118 218 1.1E-7 T 13-10-2018 IPR011089 Domain of unknown function DUF1524 RAM_09795 a465d5995f618fb222d4281f79b76522 334 Pfam PF03561 Allantoicase repeat 20 167 2.8E-41 T 13-10-2018 IPR015908 Allantoicase domain GO:0000256|GO:0004037 KEGG: 00230+3.5.3.4|MetaCyc: PWY-5697 RAM_09795 a465d5995f618fb222d4281f79b76522 334 Pfam PF03561 Allantoicase repeat 189 316 1.6E-31 T 13-10-2018 IPR015908 Allantoicase domain GO:0000256|GO:0004037 KEGG: 00230+3.5.3.4|MetaCyc: PWY-5697 RAM_09795 a465d5995f618fb222d4281f79b76522 334 Gene3D G3DSA:2.60.120.260 179 317 8.9E-37 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_09795 a465d5995f618fb222d4281f79b76522 334 Hamap MF_00813 Probable allantoicase [alc]. 2 319 41.517 T 13-10-2018 IPR005164 Allantoicase GO:0000256|GO:0004037 KEGG: 00230+3.5.3.4|MetaCyc: PWY-5697 RAM_09795 a465d5995f618fb222d4281f79b76522 334 SUPERFAMILY SSF49785 7 171 1.11E-50 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_09795 a465d5995f618fb222d4281f79b76522 334 SUPERFAMILY SSF49785 179 319 7.23E-38 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_09795 a465d5995f618fb222d4281f79b76522 334 Gene3D G3DSA:2.60.120.260 3 172 4.8E-52 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_09795 a465d5995f618fb222d4281f79b76522 334 TIGRFAM TIGR02961 allantoicase: allantoicase 11 317 2.2E-107 T 13-10-2018 IPR005164 Allantoicase GO:0000256|GO:0004037 KEGG: 00230+3.5.3.4|MetaCyc: PWY-5697 RAM_09795 a465d5995f618fb222d4281f79b76522 334 PIRSF PIRSF016516 3 270 1.5E-75 T 13-10-2018 IPR005164 Allantoicase GO:0000256|GO:0004037 KEGG: 00230+3.5.3.4|MetaCyc: PWY-5697 RAM_09795 a465d5995f618fb222d4281f79b76522 334 PIRSF PIRSF016516 263 330 6.6E-12 T 13-10-2018 IPR005164 Allantoicase GO:0000256|GO:0004037 KEGG: 00230+3.5.3.4|MetaCyc: PWY-5697 RAM_24055 55b7f9904af61e26d94dfb0b7b6bd2d1 466 Gene3D G3DSA:1.20.1250.20 266 455 3.9E-12 T 13-10-2018 RAM_24055 55b7f9904af61e26d94dfb0b7b6bd2d1 466 Gene3D G3DSA:1.20.1250.20 77 241 6.7E-10 T 13-10-2018 RAM_24055 55b7f9904af61e26d94dfb0b7b6bd2d1 466 Pfam PF11700 Vacuole effluxer Atg22 like 9 166 5.1E-30 T 13-10-2018 IPR024671 Autophagy-related protein 22-like RAM_24055 55b7f9904af61e26d94dfb0b7b6bd2d1 466 Pfam PF11700 Vacuole effluxer Atg22 like 174 458 8.4E-58 T 13-10-2018 IPR024671 Autophagy-related protein 22-like RAM_24055 55b7f9904af61e26d94dfb0b7b6bd2d1 466 SUPERFAMILY SSF103473 84 453 1.31E-33 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_18750 215c9a4df8bfc7b454087dd161e7764b 91 SUPERFAMILY SSF47336 7 84 2.49E-15 T 13-10-2018 IPR036736 ACP-like superfamily RAM_18750 215c9a4df8bfc7b454087dd161e7764b 91 Gene3D G3DSA:1.10.1200.10 1 88 1.0E-16 T 13-10-2018 IPR036736 ACP-like superfamily RAM_18750 215c9a4df8bfc7b454087dd161e7764b 91 Pfam PF00550 Phosphopantetheine attachment site 15 79 5.6E-13 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_18750 215c9a4df8bfc7b454087dd161e7764b 91 SMART SM00823 Phosphopantetheine attachment site 13 84 9.7E-4 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_11920 8632f04734633ed86a4798834b56e125 348 Gene3D G3DSA:3.40.50.300 28 269 9.6E-82 T 13-10-2018 RAM_11920 8632f04734633ed86a4798834b56e125 348 ProSitePatterns PS00321 recA signature. 215 223 - T 13-10-2018 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 RAM_11920 8632f04734633ed86a4798834b56e125 348 PRINTS PR00142 RecA protein signature 212 240 1.1E-85 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RAM_11920 8632f04734633ed86a4798834b56e125 348 PRINTS PR00142 RecA protein signature 95 124 1.1E-85 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RAM_11920 8632f04734633ed86a4798834b56e125 348 PRINTS PR00142 RecA protein signature 245 274 1.1E-85 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RAM_11920 8632f04734633ed86a4798834b56e125 348 PRINTS PR00142 RecA protein signature 167 196 1.1E-85 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RAM_11920 8632f04734633ed86a4798834b56e125 348 PRINTS PR00142 RecA protein signature 299 316 1.1E-85 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RAM_11920 8632f04734633ed86a4798834b56e125 348 PRINTS PR00142 RecA protein signature 129 158 1.1E-85 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RAM_11920 8632f04734633ed86a4798834b56e125 348 SMART SM00382 59 230 7.3E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_11920 8632f04734633ed86a4798834b56e125 348 SUPERFAMILY SSF52540 6 269 4.21E-67 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_11920 8632f04734633ed86a4798834b56e125 348 Pfam PF00154 recA bacterial DNA recombination protein 9 270 7.7E-143 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RAM_11920 8632f04734633ed86a4798834b56e125 348 SUPERFAMILY SSF54752 270 328 9.68E-21 T 13-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal RAM_11920 8632f04734633ed86a4798834b56e125 348 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 6 326 2.9E-173 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RAM_11920 8632f04734633ed86a4798834b56e125 348 Hamap MF_00268 Protein RecA [recA]. 7 331 52.43 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RAM_11920 8632f04734633ed86a4798834b56e125 348 Gene3D G3DSA:3.30.250.10 270 348 3.9E-33 T 13-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal RAM_32050 868d9312e6aeed47b00b0211eb962016 276 SUPERFAMILY SSF51735 2 230 6.25E-47 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_32050 868d9312e6aeed47b00b0211eb962016 276 Gene3D G3DSA:3.40.50.720 4 257 3.6E-64 T 13-10-2018 RAM_32050 868d9312e6aeed47b00b0211eb962016 276 Pfam PF13460 NAD(P)H-binding 7 174 9.0E-24 T 13-10-2018 IPR016040 NAD(P)-binding domain RAM_32050 868d9312e6aeed47b00b0211eb962016 276 Gene3D G3DSA:3.90.25.10 129 259 3.6E-64 T 13-10-2018 RAM_11255 5677af009f8e976576077415b10f8d50 387 Pfam PF00534 Glycosyl transferases group 1 186 360 1.5E-38 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 RAM_11255 5677af009f8e976576077415b10f8d50 387 Gene3D G3DSA:3.40.50.2000 7 368 1.9E-124 T 13-10-2018 RAM_11255 5677af009f8e976576077415b10f8d50 387 Gene3D G3DSA:3.40.50.2000 174 367 1.9E-124 T 13-10-2018 RAM_11255 5677af009f8e976576077415b10f8d50 387 SUPERFAMILY SSF53756 7 378 4.54E-76 T 13-10-2018 RAM_11255 5677af009f8e976576077415b10f8d50 387 Pfam PF13439 Glycosyltransferase Family 4 17 176 1.0E-11 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 RAM_08845 068cd51935193049a3ca00e9276c64fa 364 Pfam PF07478 D-ala D-ala ligase C-terminus 150 354 1.6E-65 T 13-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RAM_08845 068cd51935193049a3ca00e9276c64fa 364 Gene3D G3DSA:3.40.50.20 1 131 3.3E-39 T 13-10-2018 RAM_08845 068cd51935193049a3ca00e9276c64fa 364 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 6 356 1.4E-104 T 13-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RAM_08845 068cd51935193049a3ca00e9276c64fa 364 Gene3D G3DSA:3.30.1490.20 158 225 3.6E-72 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 RAM_08845 068cd51935193049a3ca00e9276c64fa 364 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 299 327 - T 13-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RAM_08845 068cd51935193049a3ca00e9276c64fa 364 Gene3D G3DSA:3.30.470.20 132 359 3.6E-72 T 13-10-2018 RAM_08845 068cd51935193049a3ca00e9276c64fa 364 PIRSF PIRSF039102 2 362 1.2E-106 T 13-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RAM_08845 068cd51935193049a3ca00e9276c64fa 364 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 5 357 39.929 T 13-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RAM_08845 068cd51935193049a3ca00e9276c64fa 364 Pfam PF01820 D-ala D-ala ligase N-terminus 6 132 5.1E-31 T 13-10-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RAM_08845 068cd51935193049a3ca00e9276c64fa 364 SUPERFAMILY SSF56059 143 357 2.12E-51 T 13-10-2018 RAM_08845 068cd51935193049a3ca00e9276c64fa 364 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 110 121 - T 13-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RAM_08845 068cd51935193049a3ca00e9276c64fa 364 SUPERFAMILY SSF52440 4 142 1.25E-35 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RAM_14895 d0e79c5961aee1f8fea6265162deff2e 560 Pfam PF08386 TAP-like protein 414 509 3.9E-14 T 13-10-2018 IPR013595 Peptidase S33 tripeptidyl aminopeptidase-like, C-terminal RAM_14895 d0e79c5961aee1f8fea6265162deff2e 560 Pfam PF00561 alpha/beta hydrolase fold 87 282 3.2E-18 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_14895 d0e79c5961aee1f8fea6265162deff2e 560 SUPERFAMILY SSF53474 81 468 3.15E-16 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_20700 b6b4134e281e0206924df97329efe078 343 SUPERFAMILY SSF56784 6 116 3.53E-13 T 13-10-2018 IPR036412 HAD-like superfamily RAM_20700 b6b4134e281e0206924df97329efe078 343 SUPERFAMILY SSF55729 170 316 1.7E-8 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_20700 b6b4134e281e0206924df97329efe078 343 Gene3D G3DSA:3.40.630.30 182 319 1.1E-7 T 13-10-2018 RAM_20700 b6b4134e281e0206924df97329efe078 343 Gene3D G3DSA:3.40.50.1000 6 152 2.1E-31 T 13-10-2018 IPR023214 HAD superfamily RAM_20700 b6b4134e281e0206924df97329efe078 343 TIGRFAM TIGR01681 HAD-SF-IIIC: HAD phosphatase, family IIIC 8 115 2.4E-11 T 13-10-2018 IPR010033 HAD-superfamily phosphatase, subfamily IIIC RAM_20700 b6b4134e281e0206924df97329efe078 343 TIGRFAM TIGR01686 FkbH: FkbH domain 6 313 2.8E-68 T 13-10-2018 IPR010037 FkbH domain RAM_02280 a676bc631f6d379c9b01c4a77e470ebe 199 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 60 2.6E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_02280 a676bc631f6d379c9b01c4a77e470ebe 199 Gene3D G3DSA:1.10.357.10 2 191 1.4E-35 T 13-10-2018 RAM_02280 a676bc631f6d379c9b01c4a77e470ebe 199 SUPERFAMILY SSF46689 5 86 5.82E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_02280 a676bc631f6d379c9b01c4a77e470ebe 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 35 58 1.8E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_02280 a676bc631f6d379c9b01c4a77e470ebe 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 14 27 1.8E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_06740 e0833b130f065b4d3c486f87de60221d 525 Gene3D G3DSA:2.80.10.50 231 329 3.8E-12 T 13-10-2018 RAM_06740 e0833b130f065b4d3c486f87de60221d 525 Gene3D G3DSA:2.60.120.260 393 523 5.5E-38 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_06740 e0833b130f065b4d3c486f87de60221d 525 SMART SM00458 186 297 4.2E-15 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_06740 e0833b130f065b4d3c486f87de60221d 525 SUPERFAMILY SSF50370 187 296 3.54E-18 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_06740 e0833b130f065b4d3c486f87de60221d 525 Pfam PF00652 Ricin-type beta-trefoil lectin domain 190 282 4.0E-11 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_06740 e0833b130f065b4d3c486f87de60221d 525 Gene3D G3DSA:2.80.10.50 179 230 5.0E-5 T 13-10-2018 RAM_06740 e0833b130f065b4d3c486f87de60221d 525 Pfam PF00754 F5/8 type C domain 403 518 1.0E-25 T 13-10-2018 IPR000421 Coagulation factor 5/8 C-terminal domain RAM_06740 e0833b130f065b4d3c486f87de60221d 525 SUPERFAMILY SSF49785 393 524 1.13E-29 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_04675 fd866b1b941776ddd4d30f121c4b60e9 412 PIRSF PIRSF005962 30 412 6.1E-102 T 13-10-2018 IPR017439 Amidohydrolase GO:0016787 RAM_04675 fd866b1b941776ddd4d30f121c4b60e9 412 Pfam PF01546 Peptidase family M20/M25/M40 97 407 1.4E-27 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 RAM_04675 fd866b1b941776ddd4d30f121c4b60e9 412 SUPERFAMILY SSF53187 31 411 3.89E-72 T 13-10-2018 RAM_04675 fd866b1b941776ddd4d30f121c4b60e9 412 Gene3D G3DSA:3.40.630.10 42 396 9.1E-112 T 13-10-2018 RAM_04675 fd866b1b941776ddd4d30f121c4b60e9 412 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 43 399 1.8E-98 T 13-10-2018 IPR017439 Amidohydrolase GO:0016787 RAM_04675 fd866b1b941776ddd4d30f121c4b60e9 412 SUPERFAMILY SSF55031 206 323 3.74E-19 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain RAM_04675 fd866b1b941776ddd4d30f121c4b60e9 412 Gene3D G3DSA:3.30.70.360 205 319 9.1E-112 T 13-10-2018 RAM_01225 e39bdb143a7544497758445c982287c0 399 Gene3D G3DSA:3.90.1150.10 18 395 8.3E-115 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_01225 e39bdb143a7544497758445c982287c0 399 TIGRFAM TIGR01976 am_tr_V_VC1184: cysteine desulfurase family protein 3 395 5.5E-118 T 13-10-2018 IPR011340 Cysteine desulfurase-related RAM_01225 e39bdb143a7544497758445c982287c0 399 Gene3D G3DSA:3.40.640.10 28 284 8.3E-115 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_01225 e39bdb143a7544497758445c982287c0 399 SUPERFAMILY SSF53383 3 398 1.02E-61 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_01225 e39bdb143a7544497758445c982287c0 399 Pfam PF00266 Aminotransferase class-V 21 391 3.1E-35 T 13-10-2018 IPR000192 Aminotransferase class V domain RAM_15220 e99d14b845d3d18b900aaef19b2b3974 152 Gene3D G3DSA:3.10.20.30 2 75 1.6E-21 T 13-10-2018 IPR012675 Beta-grasp domain superfamily RAM_15220 e99d14b845d3d18b900aaef19b2b3974 152 Gene3D G3DSA:1.10.150.120 76 152 1.8E-27 T 13-10-2018 RAM_15220 e99d14b845d3d18b900aaef19b2b3974 152 SUPERFAMILY SSF54292 3 88 3.33E-22 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RAM_15220 e99d14b845d3d18b900aaef19b2b3974 152 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 7 55 8.2E-5 T 13-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RAM_15220 e99d14b845d3d18b900aaef19b2b3974 152 Pfam PF01799 [2Fe-2S] binding domain 74 145 2.4E-26 T 13-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RAM_15220 e99d14b845d3d18b900aaef19b2b3974 152 SUPERFAMILY SSF47741 85 150 1.7E-28 T 13-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily RAM_45185 d1f7ec63c3f2089ea4776843a7e68ce3 355 TIGRFAM TIGR03815 CpaE_hom_Actino: helicase/secretion neighborhood CpaE-like protein 10 344 3.8E-83 T 13-10-2018 IPR022521 Conserved hypothetical protein CHP03815, CpaE-like RAM_45185 d1f7ec63c3f2089ea4776843a7e68ce3 355 Gene3D G3DSA:3.40.50.300 120 351 1.1E-19 T 13-10-2018 RAM_45185 d1f7ec63c3f2089ea4776843a7e68ce3 355 SUPERFAMILY SSF52540 119 324 3.99E-17 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_01390 625cde3b3b5a69eb2bd0603e93ea1ff5 571 Pfam PF09924 Uncharacterised conserved protein (DUF2156) 243 538 1.7E-93 T 13-10-2018 IPR024320 Phosphatidylglycerol lysyltransferase, C-terminal RAM_40360 ef9c6cef2c88577b3b70b3fc68c55289 422 Gene3D G3DSA:3.40.640.10 56 317 1.9E-124 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_40360 ef9c6cef2c88577b3b70b3fc68c55289 422 SUPERFAMILY SSF53383 6 418 1.19E-101 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_40360 ef9c6cef2c88577b3b70b3fc68c55289 422 Gene3D G3DSA:3.90.1150.10 5 415 1.9E-124 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_40360 ef9c6cef2c88577b3b70b3fc68c55289 422 PIRSF PIRSF000521 172 418 7.8E-10 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RAM_40360 ef9c6cef2c88577b3b70b3fc68c55289 422 PIRSF PIRSF000521 12 135 0.019 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RAM_40360 ef9c6cef2c88577b3b70b3fc68c55289 422 Pfam PF00202 Aminotransferase class-III 21 414 1.7E-77 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RAM_37840 93f8db91cbe33894683624ee7aaefdeb 773 Gene3D G3DSA:3.40.190.10 517 574 6.6E-6 T 13-10-2018 RAM_37840 93f8db91cbe33894683624ee7aaefdeb 773 Gene3D G3DSA:3.40.190.10 552 616 6.6E-6 T 13-10-2018 RAM_37065 863210be4f2eb66512610f0b8d5d7ca2 353 SUPERFAMILY SSF51905 10 47 1.52E-5 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_37065 863210be4f2eb66512610f0b8d5d7ca2 353 SUPERFAMILY SSF51905 38 260 2.27E-30 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_37065 863210be4f2eb66512610f0b8d5d7ca2 353 Pfam PF00743 Flavin-binding monooxygenase-like 7 105 6.3E-6 T 13-10-2018 IPR020946 Flavin monooxygenase-like GO:0004499|GO:0050660|GO:0050661|GO:0055114 RAM_37065 863210be4f2eb66512610f0b8d5d7ca2 353 Gene3D G3DSA:3.50.50.60 1 182 2.8E-33 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_37065 863210be4f2eb66512610f0b8d5d7ca2 353 Gene3D G3DSA:3.50.50.60 234 349 1.9E-10 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_45625 c020520524e1072ededb0a3f7ee13d65 297 Pfam PF00892 EamA-like transporter family 7 130 4.7E-12 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RAM_45625 c020520524e1072ededb0a3f7ee13d65 297 Pfam PF00892 EamA-like transporter family 142 282 1.3E-16 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RAM_45625 c020520524e1072ededb0a3f7ee13d65 297 SUPERFAMILY SSF103481 184 286 9.42E-12 T 13-10-2018 RAM_45625 c020520524e1072ededb0a3f7ee13d65 297 SUPERFAMILY SSF103481 42 135 5.36E-14 T 13-10-2018 RAM_39695 dfc5917587c0d68442e2e1b697abc454 133 SUPERFAMILY SSF82784 1 131 4.45E-21 T 13-10-2018 IPR036102 OsmC/Ohr superfamily RAM_39695 dfc5917587c0d68442e2e1b697abc454 133 Pfam PF02566 OsmC-like protein 30 129 3.6E-15 T 13-10-2018 IPR003718 OsmC/Ohr family RAM_39695 dfc5917587c0d68442e2e1b697abc454 133 Gene3D G3DSA:3.30.300.20 1 132 4.2E-22 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta RAM_20110 e0ed27cc1a6906cc3013d8fef59e3d00 529 Gene3D G3DSA:3.40.50.12780 9 400 4.1E-70 T 13-10-2018 RAM_20110 e0ed27cc1a6906cc3013d8fef59e3d00 529 Pfam PF13193 AMP-binding enzyme C-terminal domain 413 488 3.9E-11 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_20110 e0ed27cc1a6906cc3013d8fef59e3d00 529 SUPERFAMILY SSF56801 12 498 9.68E-98 T 13-10-2018 RAM_20110 e0ed27cc1a6906cc3013d8fef59e3d00 529 ProSitePatterns PS00455 Putative AMP-binding domain signature. 150 161 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_20110 e0ed27cc1a6906cc3013d8fef59e3d00 529 Gene3D G3DSA:3.30.300.310 401 500 6.7E-20 T 13-10-2018 RAM_20110 e0ed27cc1a6906cc3013d8fef59e3d00 529 Pfam PF00501 AMP-binding enzyme 17 402 2.6E-58 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_26050 437d1d6b8ab5f5ad46a3945b5664f96a 283 SUPERFAMILY SSF47413 28 80 8.59E-11 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_26050 437d1d6b8ab5f5ad46a3945b5664f96a 283 Pfam PF13560 Helix-turn-helix domain 6 84 2.4E-15 T 13-10-2018 RAM_26050 437d1d6b8ab5f5ad46a3945b5664f96a 283 Gene3D G3DSA:3.30.450.180 108 274 3.1E-6 T 13-10-2018 RAM_26050 437d1d6b8ab5f5ad46a3945b5664f96a 283 SMART SM00530 9 81 1.4E-9 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_26050 437d1d6b8ab5f5ad46a3945b5664f96a 283 Gene3D G3DSA:1.10.260.40 22 93 2.1E-10 T 13-10-2018 RAM_08945 61128ec390d40a4498513cf650bd5d7b 260 Gene3D G3DSA:3.40.800.10 5 253 1.7E-38 T 13-10-2018 RAM_08945 61128ec390d40a4498513cf650bd5d7b 260 SUPERFAMILY SSF52768 69 238 1.8E-33 T 13-10-2018 IPR023696 Ureohydrolase domain superfamily RAM_08945 61128ec390d40a4498513cf650bd5d7b 260 Pfam PF00491 Arginase family 69 238 4.3E-21 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 RAM_08945 61128ec390d40a4498513cf650bd5d7b 260 PRINTS PR00116 Arginase signature 107 134 5.4E-6 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 RAM_08945 61128ec390d40a4498513cf650bd5d7b 260 PRINTS PR00116 Arginase signature 157 175 5.4E-6 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 RAM_15705 e1e765baa8ae87d19e67c06dca283f80 257 Gene3D G3DSA:3.40.50.720 5 247 4.8E-75 T 13-10-2018 RAM_15705 e1e765baa8ae87d19e67c06dca283f80 257 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 243 2.3E-56 T 13-10-2018 RAM_15705 e1e765baa8ae87d19e67c06dca283f80 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 184 6.4E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15705 e1e765baa8ae87d19e67c06dca283f80 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 6.4E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15705 e1e765baa8ae87d19e67c06dca283f80 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 6.4E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15705 e1e765baa8ae87d19e67c06dca283f80 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 206 226 6.4E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15705 e1e765baa8ae87d19e67c06dca283f80 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 120 136 6.4E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15705 e1e765baa8ae87d19e67c06dca283f80 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 6.4E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15705 e1e765baa8ae87d19e67c06dca283f80 257 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 12 186 0.0011 T 13-10-2018 RAM_15705 e1e765baa8ae87d19e67c06dca283f80 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 165 2.0E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15705 e1e765baa8ae87d19e67c06dca283f80 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 73 84 2.0E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15705 e1e765baa8ae87d19e67c06dca283f80 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 126 134 2.0E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15705 e1e765baa8ae87d19e67c06dca283f80 257 SUPERFAMILY SSF51735 6 245 2.15E-72 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_15705 e1e765baa8ae87d19e67c06dca283f80 257 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 133 161 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_28520 87ee78b372bb0bf8d06e6e0cba3e7d1c 391 Gene3D G3DSA:3.30.590.20 8 372 4.4E-92 T 13-10-2018 RAM_28520 87ee78b372bb0bf8d06e6e0cba3e7d1c 391 TIGRFAM TIGR02050 gshA_cyan_rel: carboxylate-amine ligase, YbdK family 14 293 5.4E-58 T 13-10-2018 IPR011793 Putative glutamate--cysteine ligase YbdK GO:0016879 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 RAM_28520 87ee78b372bb0bf8d06e6e0cba3e7d1c 391 SUPERFAMILY SSF55931 9 368 7.75E-74 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 RAM_28520 87ee78b372bb0bf8d06e6e0cba3e7d1c 391 Hamap MF_01609 Glutamate--cysteine ligase [gshA]. 1 391 61.547 T 13-10-2018 IPR011793 Putative glutamate--cysteine ligase YbdK GO:0016879 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 RAM_28520 87ee78b372bb0bf8d06e6e0cba3e7d1c 391 Pfam PF04107 Glutamate-cysteine ligase family 2(GCS2) 15 283 8.5E-32 T 13-10-2018 IPR006336 Glutamate--cysteine ligase, GCS2 GO:0004357|GO:0042398 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 RAM_42740 2bdd59faf50e75b53d5b39a4e5eb1608 233 Gene3D G3DSA:3.40.50.2300 1 125 1.6E-42 T 13-10-2018 RAM_42740 2bdd59faf50e75b53d5b39a4e5eb1608 233 Gene3D G3DSA:1.10.10.10 126 232 3.0E-32 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_42740 2bdd59faf50e75b53d5b39a4e5eb1608 233 SMART SM00862 153 228 1.6E-25 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_42740 2bdd59faf50e75b53d5b39a4e5eb1608 233 SUPERFAMILY SSF52172 7 177 1.41E-46 T 13-10-2018 IPR011006 CheY-like superfamily RAM_42740 2bdd59faf50e75b53d5b39a4e5eb1608 233 SMART SM00448 6 116 3.3E-50 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_42740 2bdd59faf50e75b53d5b39a4e5eb1608 233 Pfam PF00486 Transcriptional regulatory protein, C terminal 153 227 6.0E-25 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_42740 2bdd59faf50e75b53d5b39a4e5eb1608 233 Pfam PF00072 Response regulator receiver domain 8 116 1.5E-32 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_21925 ac82b7338dbfb5c515d769ff792d869b 436 Pfam PF00296 Luciferase-like monooxygenase 15 375 1.2E-62 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_21925 ac82b7338dbfb5c515d769ff792d869b 436 Gene3D G3DSA:3.20.20.30 1 435 2.1E-164 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_21925 ac82b7338dbfb5c515d769ff792d869b 436 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 3 420 4.4E-181 T 13-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 RAM_21925 ac82b7338dbfb5c515d769ff792d869b 436 SUPERFAMILY SSF51679 1 426 6.41E-136 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_21925 ac82b7338dbfb5c515d769ff792d869b 436 PIRSF PIRSF000337 1 435 3.0E-169 T 13-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 RAM_19670 c454026a0621f5d2f9b2277d08325d2e 258 SUPERFAMILY SSF52096 3 257 9.96E-83 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_19670 c454026a0621f5d2f9b2277d08325d2e 258 Pfam PF00378 Enoyl-CoA hydratase/isomerase 12 257 4.5E-52 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RAM_19670 c454026a0621f5d2f9b2277d08325d2e 258 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 100 120 - T 13-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 RAM_19670 c454026a0621f5d2f9b2277d08325d2e 258 Gene3D G3DSA:1.10.12.10 202 257 1.3E-13 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal RAM_19670 c454026a0621f5d2f9b2277d08325d2e 258 Gene3D G3DSA:3.90.226.10 1 201 2.1E-71 T 13-10-2018 RAM_29865 7eb3b01292247cd2c7d273e238dbf608 111 Gene3D G3DSA:3.40.309.10 2 46 5.9E-8 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RAM_29865 7eb3b01292247cd2c7d273e238dbf608 111 Pfam PF00171 Aldehyde dehydrogenase family 2 57 5.5E-6 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RAM_29865 7eb3b01292247cd2c7d273e238dbf608 111 SUPERFAMILY SSF53720 2 80 3.23E-6 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RAM_29865 7eb3b01292247cd2c7d273e238dbf608 111 Gene3D G3DSA:3.40.605.10 47 58 5.9E-8 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RAM_21650 09371600b702fba59302ce7034bec123 307 Pfam PF05425 Copper resistance protein D 196 300 8.2E-15 T 13-10-2018 IPR008457 Copper resistance protein D GO:0016021 RAM_35950 49ccd7c18af8d513dc5716f276db19c0 73 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 6 71 2.2E-33 T 13-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 RAM_35950 49ccd7c18af8d513dc5716f276db19c0 73 Pfam PF01176 Translation initiation factor 1A / IF-1 7 70 4.1E-26 T 13-10-2018 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 RAM_35950 49ccd7c18af8d513dc5716f276db19c0 73 Gene3D G3DSA:2.40.50.140 1 72 2.5E-33 T 13-10-2018 RAM_35950 49ccd7c18af8d513dc5716f276db19c0 73 SUPERFAMILY SSF50249 5 72 1.71E-25 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_35950 49ccd7c18af8d513dc5716f276db19c0 73 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 24.855 T 13-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 RAM_35950 49ccd7c18af8d513dc5716f276db19c0 73 SMART SM00316 4 72 3.1E-7 T 13-10-2018 IPR022967 RNA-binding domain, S1 RAM_11525 c31bbc2776a338ce249ebec7f02b97bc 309 SUPERFAMILY SSF52518 1 160 4.07E-34 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_11525 c31bbc2776a338ce249ebec7f02b97bc 309 Gene3D G3DSA:3.40.50.970 1 170 9.6E-40 T 13-10-2018 RAM_11525 c31bbc2776a338ce249ebec7f02b97bc 309 Gene3D G3DSA:3.40.50.920 172 303 2.1E-9 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RAM_11525 c31bbc2776a338ce249ebec7f02b97bc 309 SMART SM00861 1 166 8.7E-20 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain RAM_11525 c31bbc2776a338ce249ebec7f02b97bc 309 SUPERFAMILY SSF52922 174 294 4.06E-11 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RAM_11525 c31bbc2776a338ce249ebec7f02b97bc 309 Pfam PF02779 Transketolase, pyrimidine binding domain 3 161 6.7E-22 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain RAM_04190 823c8d36ad69a97be7ec8edf37db0e42 107 Pfam PF11222 Protein of unknown function (DUF3017) 26 98 1.9E-22 T 13-10-2018 IPR021385 Protein of unknown function DUF3017 RAM_05145 26e81a87ce57aee35b7ad9181d3b3f6e 297 Gene3D G3DSA:3.90.550.10 1 201 8.6E-32 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_05145 26e81a87ce57aee35b7ad9181d3b3f6e 297 Pfam PF00535 Glycosyl transferase family 2 8 155 1.4E-19 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RAM_05145 26e81a87ce57aee35b7ad9181d3b3f6e 297 SUPERFAMILY SSF53448 2 219 4.39E-41 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_17055 dccc3321899a1f6661cf05082d056610 198 Pfam PF02909 Tetracyclin repressor, C-terminal all-alpha domain 63 195 1.9E-19 T 13-10-2018 IPR004111 Tetracycline transcriptional regulator, TetR, C-terminal GO:0045892 RAM_17055 dccc3321899a1f6661cf05082d056610 198 PRINTS PR00400 Tetracycline repressor protein signature 18 41 6.0E-11 T 13-10-2018 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 RAM_17055 dccc3321899a1f6661cf05082d056610 198 PRINTS PR00400 Tetracycline repressor protein signature 125 144 6.0E-11 T 13-10-2018 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 RAM_17055 dccc3321899a1f6661cf05082d056610 198 PRINTS PR00400 Tetracycline repressor protein signature 69 88 6.0E-11 T 13-10-2018 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 RAM_17055 dccc3321899a1f6661cf05082d056610 198 PRINTS PR00400 Tetracycline repressor protein signature 181 195 6.0E-11 T 13-10-2018 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 RAM_17055 dccc3321899a1f6661cf05082d056610 198 SUPERFAMILY SSF46689 2 58 2.36E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_17055 dccc3321899a1f6661cf05082d056610 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 6 50 5.9E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_17055 dccc3321899a1f6661cf05082d056610 198 Gene3D G3DSA:1.10.357.10 62 197 1.5E-28 T 13-10-2018 RAM_17055 dccc3321899a1f6661cf05082d056610 198 Gene3D G3DSA:1.10.10.60 1 60 8.3E-23 T 13-10-2018 RAM_17055 dccc3321899a1f6661cf05082d056610 198 SUPERFAMILY SSF48498 63 195 2.45E-25 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_08630 efc3b3b3e7bb785f0bd21c81838e5af7 415 Pfam PF01494 FAD binding domain 8 327 8.1E-57 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_08630 efc3b3b3e7bb785f0bd21c81838e5af7 415 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 300 316 4.3E-20 T 13-10-2018 RAM_08630 efc3b3b3e7bb785f0bd21c81838e5af7 415 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 9 31 4.3E-20 T 13-10-2018 RAM_08630 efc3b3b3e7bb785f0bd21c81838e5af7 415 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 285 300 4.3E-20 T 13-10-2018 RAM_08630 efc3b3b3e7bb785f0bd21c81838e5af7 415 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 160 175 4.3E-20 T 13-10-2018 RAM_08630 efc3b3b3e7bb785f0bd21c81838e5af7 415 SUPERFAMILY SSF51905 9 361 6.2E-55 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_08630 efc3b3b3e7bb785f0bd21c81838e5af7 415 Gene3D G3DSA:3.50.50.60 5 356 3.0E-58 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_19695 8f08f65c4406509fe9e7af04f06bbc94 381 SUPERFAMILY SSF53901 18 323 1.32E-21 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_19695 8f08f65c4406509fe9e7af04f06bbc94 381 Gene3D G3DSA:3.40.47.10 3 381 3.0E-83 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_19695 8f08f65c4406509fe9e7af04f06bbc94 381 PIRSF PIRSF000429 1 374 2.3E-18 T 13-10-2018 IPR002155 Thiolase GO:0016747 RAM_41030 beaa0a120a99dcb77092c696b1aa18b5 123 Pfam PF13419 Haloacid dehalogenase-like hydrolase 20 102 2.1E-10 T 13-10-2018 RAM_41030 beaa0a120a99dcb77092c696b1aa18b5 123 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 18 106 2.6E-16 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_41030 beaa0a120a99dcb77092c696b1aa18b5 123 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 24 101 1.3E-8 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_41030 beaa0a120a99dcb77092c696b1aa18b5 123 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 23 36 7.1E-5 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_41030 beaa0a120a99dcb77092c696b1aa18b5 123 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 69 89 7.1E-5 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_41030 beaa0a120a99dcb77092c696b1aa18b5 123 Gene3D G3DSA:3.40.50.1000 3 122 2.6E-30 T 13-10-2018 IPR023214 HAD superfamily RAM_41030 beaa0a120a99dcb77092c696b1aa18b5 123 SUPERFAMILY SSF56784 17 111 6.04E-26 T 13-10-2018 IPR036412 HAD-like superfamily RAM_10940 5b29132bd540a87d8c1ecbe862a07bd1 252 SUPERFAMILY SSF56300 1 248 3.21E-44 T 13-10-2018 RAM_10940 5b29132bd540a87d8c1ecbe862a07bd1 252 Hamap MF_00905 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA [cpdA]. 1 250 34.612 T 13-10-2018 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA GO:0004115 KEGG: 00230+3.1.4.53 RAM_10940 5b29132bd540a87d8c1ecbe862a07bd1 252 Pfam PF00149 Calcineurin-like phosphoesterase 3 185 8.8E-16 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 RAM_10940 5b29132bd540a87d8c1ecbe862a07bd1 252 Gene3D G3DSA:3.60.21.10 1 251 2.5E-64 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like RAM_05995 76f3ea57dc6a7c9440a76b905b5db663 270 Gene3D G3DSA:3.30.70.20 204 266 2.7E-13 T 13-10-2018 RAM_05995 76f3ea57dc6a7c9440a76b905b5db663 270 Pfam PF13370 4Fe-4S single cluster domain of Ferredoxin I 210 264 1.4E-8 T 13-10-2018 RAM_05995 76f3ea57dc6a7c9440a76b905b5db663 270 SUPERFAMILY SSF54862 207 265 2.36E-7 T 13-10-2018 RAM_25525 feeaa18ca180c63cb3bb9f570ec61d5f 341 TIGRFAM TIGR03559 F420_Rv3520c: probable F420-dependent oxidoreductase, Rv3520c family 2 326 8.3E-145 T 13-10-2018 IPR019951 F420-dependent oxidoreductase-predicted, Rv3520c RAM_25525 feeaa18ca180c63cb3bb9f570ec61d5f 341 Gene3D G3DSA:3.20.20.30 2 337 1.6E-81 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_25525 feeaa18ca180c63cb3bb9f570ec61d5f 341 SUPERFAMILY SSF51679 2 328 7.59E-66 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_25525 feeaa18ca180c63cb3bb9f570ec61d5f 341 Pfam PF00296 Luciferase-like monooxygenase 18 322 3.5E-74 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_31660 7d01715700298aea180d6eb959baa738 207 Gene3D G3DSA:3.90.1200.10 13 153 4.5E-9 T 13-10-2018 RAM_31660 7d01715700298aea180d6eb959baa738 207 SUPERFAMILY SSF56112 18 185 4.98E-25 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_31660 7d01715700298aea180d6eb959baa738 207 Pfam PF01636 Phosphotransferase enzyme family 6 152 3.6E-13 T 13-10-2018 IPR002575 Aminoglycoside phosphotransferase RAM_42785 1e22ba58d82ca9d54b1ab8e0d3f55a3d 266 SMART SM00420 6 58 9.8E-16 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RAM_42785 1e22ba58d82ca9d54b1ab8e0d3f55a3d 266 Gene3D G3DSA:1.10.10.10 4 111 1.9E-6 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_42785 1e22ba58d82ca9d54b1ab8e0d3f55a3d 266 SMART SM01134 74 236 1.6E-55 T 13-10-2018 RAM_42785 1e22ba58d82ca9d54b1ab8e0d3f55a3d 266 SUPERFAMILY SSF100950 76 236 3.45E-29 T 13-10-2018 IPR037171 NagB/RpiA transferase-like RAM_42785 1e22ba58d82ca9d54b1ab8e0d3f55a3d 266 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 1.0E-7 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RAM_42785 1e22ba58d82ca9d54b1ab8e0d3f55a3d 266 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 1.0E-7 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RAM_42785 1e22ba58d82ca9d54b1ab8e0d3f55a3d 266 Pfam PF00455 DeoR C terminal sensor domain 76 234 5.4E-46 T 13-10-2018 IPR014036 DeoR C-terminal sensor domain RAM_42785 1e22ba58d82ca9d54b1ab8e0d3f55a3d 266 Pfam PF08220 DeoR-like helix-turn-helix domain 6 58 2.7E-15 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RAM_42785 1e22ba58d82ca9d54b1ab8e0d3f55a3d 266 SUPERFAMILY SSF46785 5 59 5.13E-11 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_28760 44b5651b6c7d0ffd2c2371c67ea5e9e4 158 PRINTS PR00598 Bacterial regulatory protein MarR family signature 116 136 8.8E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_28760 44b5651b6c7d0ffd2c2371c67ea5e9e4 158 PRINTS PR00598 Bacterial regulatory protein MarR family signature 67 82 8.8E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_28760 44b5651b6c7d0ffd2c2371c67ea5e9e4 158 PRINTS PR00598 Bacterial regulatory protein MarR family signature 50 66 8.8E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_28760 44b5651b6c7d0ffd2c2371c67ea5e9e4 158 Pfam PF12802 MarR family 32 90 1.4E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_28760 44b5651b6c7d0ffd2c2371c67ea5e9e4 158 SUPERFAMILY SSF46785 8 141 7.72E-29 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_28760 44b5651b6c7d0ffd2c2371c67ea5e9e4 158 SMART SM00347 26 126 8.7E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_28760 44b5651b6c7d0ffd2c2371c67ea5e9e4 158 Gene3D G3DSA:1.10.10.10 3 145 2.1E-32 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_05260 27f7183a1197ab627edf9dd3125cea35 260 SUPERFAMILY SSF55486 105 228 5.31E-14 T 13-10-2018 RAM_05260 27f7183a1197ab627edf9dd3125cea35 260 Pfam PF11350 Protein of unknown function (DUF3152) 61 226 3.0E-33 T 13-10-2018 IPR022603 Domain of unknown function DUF3152 RAM_23550 133a97aea095241173e2ede202a90d96 203 SUPERFAMILY SSF56784 72 189 2.61E-7 T 13-10-2018 IPR036412 HAD-like superfamily RAM_23550 133a97aea095241173e2ede202a90d96 203 Gene3D G3DSA:3.40.50.1000 24 199 1.1E-33 T 13-10-2018 IPR023214 HAD superfamily RAM_23550 133a97aea095241173e2ede202a90d96 203 Pfam PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) 97 198 3.6E-17 T 13-10-2018 IPR005519 Acid phosphatase, class B-like RAM_11695 abe753c3f9f52a339bf747dd711386d7 188 Gene3D G3DSA:3.90.1570.10 15 182 8.9E-16 T 13-10-2018 RAM_11695 abe753c3f9f52a339bf747dd711386d7 188 Pfam PF05685 Putative restriction endonuclease 23 178 1.1E-22 T 13-10-2018 IPR008538 Domain of unknown function DUF820 RAM_11695 abe753c3f9f52a339bf747dd711386d7 188 SUPERFAMILY SSF52980 19 170 4.93E-17 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 RAM_34525 ced6d8d4989b1c1131afa1bd5a3964d2 45 Gene3D G3DSA:3.40.50.720 2 45 1.3E-6 T 13-10-2018 RAM_34525 ced6d8d4989b1c1131afa1bd5a3964d2 45 SUPERFAMILY SSF51735 5 40 2.99E-6 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_16760 d6e7b31c96cfa9222531f28a150fd1b3 228 SMART SM00895 86 212 8.8E-17 T 13-10-2018 IPR011711 GntR, C-terminal RAM_16760 d6e7b31c96cfa9222531f28a150fd1b3 228 Gene3D G3DSA:1.20.120.530 82 224 2.5E-24 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_16760 d6e7b31c96cfa9222531f28a150fd1b3 228 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 50 1.1E-6 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_16760 d6e7b31c96cfa9222531f28a150fd1b3 228 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 20 34 1.1E-6 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_16760 d6e7b31c96cfa9222531f28a150fd1b3 228 SUPERFAMILY SSF46785 1 64 2.73E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_16760 d6e7b31c96cfa9222531f28a150fd1b3 228 Pfam PF00392 Bacterial regulatory proteins, gntR family 1 60 6.4E-17 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_16760 d6e7b31c96cfa9222531f28a150fd1b3 228 SUPERFAMILY SSF48008 84 218 5.75E-23 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_16760 d6e7b31c96cfa9222531f28a150fd1b3 228 SMART SM00345 1 60 3.6E-13 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_16760 d6e7b31c96cfa9222531f28a150fd1b3 228 Pfam PF07729 FCD domain 87 211 7.0E-21 T 13-10-2018 IPR011711 GntR, C-terminal RAM_16760 d6e7b31c96cfa9222531f28a150fd1b3 228 Gene3D G3DSA:1.10.10.10 1 64 2.1E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_02420 061555c70bde815e6bb72ab71efae0ae 223 Pfam PF00072 Response regulator receiver domain 3 100 3.0E-13 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_02420 061555c70bde815e6bb72ab71efae0ae 223 Gene3D G3DSA:1.10.10.10 103 219 3.4E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_02420 061555c70bde815e6bb72ab71efae0ae 223 SUPERFAMILY SSF52172 2 153 1.11E-18 T 13-10-2018 IPR011006 CheY-like superfamily RAM_02420 061555c70bde815e6bb72ab71efae0ae 223 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 165 181 3.4E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_02420 061555c70bde815e6bb72ab71efae0ae 223 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 151 165 3.4E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_02420 061555c70bde815e6bb72ab71efae0ae 223 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 181 193 3.4E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_02420 061555c70bde815e6bb72ab71efae0ae 223 Gene3D G3DSA:3.40.50.2300 1 99 1.7E-14 T 13-10-2018 RAM_02420 061555c70bde815e6bb72ab71efae0ae 223 SMART SM00448 1 120 2.4E-6 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_02420 061555c70bde815e6bb72ab71efae0ae 223 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 195 8.1E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_02420 061555c70bde815e6bb72ab71efae0ae 223 SUPERFAMILY SSF46894 132 196 5.1E-14 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_02420 061555c70bde815e6bb72ab71efae0ae 223 SMART SM00421 148 207 3.6E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_33895 6e70c213ca05d27817d124f7a892c90f 215 Gene3D G3DSA:2.40.260.10 62 212 4.0E-14 T 13-10-2018 IPR023365 Sortase domain superfamily RAM_33895 6e70c213ca05d27817d124f7a892c90f 215 SUPERFAMILY SSF63817 65 210 1.1E-10 T 13-10-2018 IPR023365 Sortase domain superfamily RAM_33895 6e70c213ca05d27817d124f7a892c90f 215 Pfam PF04203 Sortase family 111 210 3.0E-9 T 13-10-2018 IPR005754 Sortase family RAM_40345 05dcdcec0ea3dbdfba5da754211751c2 167 Gene3D G3DSA:3.40.630.30 1 157 3.9E-23 T 13-10-2018 RAM_40345 05dcdcec0ea3dbdfba5da754211751c2 167 Pfam PF00583 Acetyltransferase (GNAT) family 48 129 3.5E-14 T 13-10-2018 IPR000182 GNAT domain RAM_40345 05dcdcec0ea3dbdfba5da754211751c2 167 SUPERFAMILY SSF55729 2 140 2.7E-24 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_20695 e6d3ac6407ab07bd7c166692e39f0863 279 SUPERFAMILY SSF51735 2 179 6.43E-44 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_20695 e6d3ac6407ab07bd7c166692e39f0863 279 Gene3D G3DSA:3.40.50.720 1 178 1.4E-52 T 13-10-2018 RAM_20695 e6d3ac6407ab07bd7c166692e39f0863 279 Gene3D G3DSA:1.10.1040.10 180 279 1.6E-26 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RAM_20695 e6d3ac6407ab07bd7c166692e39f0863 279 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 180 276 4.9E-28 T 13-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RAM_20695 e6d3ac6407ab07bd7c166692e39f0863 279 SUPERFAMILY SSF48179 179 278 1.36E-27 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RAM_20695 e6d3ac6407ab07bd7c166692e39f0863 279 PIRSF PIRSF000105 1 279 3.0E-70 T 13-10-2018 IPR022694 3-hydroxyacyl-CoA dehydrogenase GO:0003857|GO:0006631|GO:0055114|GO:0070403 RAM_20695 e6d3ac6407ab07bd7c166692e39f0863 279 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2 177 1.8E-47 T 13-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RAM_09315 1ede244ebe0253043b25324d0e3f7e6b 434 Pfam PF13378 Enolase C-terminal domain-like 200 414 5.2E-60 T 13-10-2018 IPR029065 Enolase C-terminal domain-like RAM_09315 1ede244ebe0253043b25324d0e3f7e6b 434 Gene3D G3DSA:3.30.390.10 1 129 4.5E-48 T 13-10-2018 IPR029017 Enolase-like, N-terminal RAM_09315 1ede244ebe0253043b25324d0e3f7e6b 434 Gene3D G3DSA:3.20.20.120 130 434 1.5E-107 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RAM_09315 1ede244ebe0253043b25324d0e3f7e6b 434 SMART SM00922 197 293 1.7E-24 T 13-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal RAM_09315 1ede244ebe0253043b25324d0e3f7e6b 434 SUPERFAMILY SSF51604 182 427 6.81E-65 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RAM_09315 1ede244ebe0253043b25324d0e3f7e6b 434 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 243 274 - T 13-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 RAM_09315 1ede244ebe0253043b25324d0e3f7e6b 434 SUPERFAMILY SSF54826 3 137 3.87E-35 T 13-10-2018 RAM_09315 1ede244ebe0253043b25324d0e3f7e6b 434 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 35 132 4.5E-7 T 13-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain RAM_09765 81373cec5595f0ee21b56d4b2ed10ce2 364 Pfam PF13808 DDE_Tnp_1-associated 1 80 5.1E-14 T 13-10-2018 IPR032806 H repeat-associated protein, N-terminal RAM_09765 81373cec5595f0ee21b56d4b2ed10ce2 364 Pfam PF01609 Transposase DDE domain 97 300 5.4E-14 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 RAM_31930 95872e6ed857f3f087e0ed1fdcb7a290 142 SUPERFAMILY SSF55874 42 128 9.49E-6 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_31930 95872e6ed857f3f087e0ed1fdcb7a290 142 Gene3D G3DSA:3.30.565.10 14 137 2.6E-24 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_31930 95872e6ed857f3f087e0ed1fdcb7a290 142 Pfam PF13581 Histidine kinase-like ATPase domain 23 127 3.8E-7 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_47100 f51fea966b2ee388d38a76d090e89325 116 SUPERFAMILY SSF54909 6 113 5.36E-22 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_47100 f51fea966b2ee388d38a76d090e89325 116 Gene3D G3DSA:3.30.70.1060 1 115 7.4E-31 T 13-10-2018 RAM_47100 f51fea966b2ee388d38a76d090e89325 116 Pfam PF03795 YCII-related domain 6 114 9.1E-17 T 13-10-2018 IPR005545 YCII-related RAM_05745 f4f5122305f22b0559c4d31fa3cba0c1 269 Gene3D G3DSA:3.40.50.10090 11 258 2.8E-65 T 13-10-2018 RAM_05745 f4f5122305f22b0559c4d31fa3cba0c1 269 SUPERFAMILY SSF69618 6 266 1.96E-51 T 13-10-2018 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RAM_05745 f4f5122305f22b0559c4d31fa3cba0c1 269 Gene3D G3DSA:3.40.50.10090 37 175 2.8E-65 T 13-10-2018 RAM_05745 f4f5122305f22b0559c4d31fa3cba0c1 269 Pfam PF02602 Uroporphyrinogen-III synthase HemD 19 259 4.3E-37 T 13-10-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RAM_09880 7af56658ecba6438b059ffb7506d5fc4 250 SUPERFAMILY SSF51735 3 249 5.99E-76 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_09880 7af56658ecba6438b059ffb7506d5fc4 250 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_09880 7af56658ecba6438b059ffb7506d5fc4 250 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 249 1.6E-62 T 13-10-2018 RAM_09880 7af56658ecba6438b059ffb7506d5fc4 250 Gene3D G3DSA:3.40.50.720 2 250 2.2E-81 T 13-10-2018 RAM_09880 7af56658ecba6438b059ffb7506d5fc4 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 1.3E-42 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_09880 7af56658ecba6438b059ffb7506d5fc4 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.3E-42 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_09880 7af56658ecba6438b059ffb7506d5fc4 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 1.3E-42 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_09880 7af56658ecba6438b059ffb7506d5fc4 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 1.3E-42 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_09880 7af56658ecba6438b059ffb7506d5fc4 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 1.3E-42 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_09880 7af56658ecba6438b059ffb7506d5fc4 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 1.3E-42 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_09880 7af56658ecba6438b059ffb7506d5fc4 250 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 186 0.009 T 13-10-2018 RAM_09880 7af56658ecba6438b059ffb7506d5fc4 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 1.6E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_09880 7af56658ecba6438b059ffb7506d5fc4 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 1.6E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_09880 7af56658ecba6438b059ffb7506d5fc4 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 1.6E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_32840 efc231fabee76bb7eee4ee0507d2f758 214 SUPERFAMILY SSF48613 17 179 6.37E-5 T 13-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 RAM_32840 efc231fabee76bb7eee4ee0507d2f758 214 Gene3D G3DSA:1.20.910.10 9 209 2.3E-6 T 13-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 RAM_32840 efc231fabee76bb7eee4ee0507d2f758 214 ProDom PD209215 WITH SIMILARITIES RP592 11 208 1.0E-20 T 13-10-2018 RAM_31145 2f1b3081251c4af30c7ba17898cc52d9 133 Pfam PF01638 HxlR-like helix-turn-helix 32 118 1.5E-24 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type RAM_31145 2f1b3081251c4af30c7ba17898cc52d9 133 SUPERFAMILY SSF46785 21 129 5.93E-29 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_31145 2f1b3081251c4af30c7ba17898cc52d9 133 Gene3D G3DSA:1.10.10.10 13 130 8.2E-36 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_08070 158e8d31cc93d9f0ddb37591f4bb4966 348 Pfam PF06580 Histidine kinase 142 220 4.6E-20 T 13-10-2018 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 RAM_08070 158e8d31cc93d9f0ddb37591f4bb4966 348 PRINTS PR00344 Bacterial sensor protein C-terminal signature 300 318 9.3E-5 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_08070 158e8d31cc93d9f0ddb37591f4bb4966 348 PRINTS PR00344 Bacterial sensor protein C-terminal signature 327 340 9.3E-5 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_08070 158e8d31cc93d9f0ddb37591f4bb4966 348 PRINTS PR00344 Bacterial sensor protein C-terminal signature 272 286 9.3E-5 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_08070 158e8d31cc93d9f0ddb37591f4bb4966 348 Gene3D G3DSA:3.30.565.10 202 343 7.9E-20 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_08070 158e8d31cc93d9f0ddb37591f4bb4966 348 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 239 340 6.9E-8 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_08070 158e8d31cc93d9f0ddb37591f4bb4966 348 SMART SM00387 235 343 0.0026 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_08070 158e8d31cc93d9f0ddb37591f4bb4966 348 SUPERFAMILY SSF55874 200 340 1.7E-19 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_02215 c3165e2617b337af76316b3406ad3d47 482 Pfam PF00221 Aromatic amino acid lyase 13 432 3.7E-78 T 13-10-2018 IPR001106 Aromatic amino acid lyase Reactome: R-HSA-70921 RAM_02215 c3165e2617b337af76316b3406ad3d47 482 SUPERFAMILY SSF48557 10 477 1.65E-88 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 RAM_02215 c3165e2617b337af76316b3406ad3d47 482 Gene3D G3DSA:1.10.275.10 8 185 2.7E-38 T 13-10-2018 IPR024083 Fumarase/histidase, N-terminal RAM_02215 c3165e2617b337af76316b3406ad3d47 482 Gene3D G3DSA:1.20.200.10 189 479 7.9E-45 T 13-10-2018 RAM_17030 77784f2f07a70d69a7a1285dcfe757da 439 Gene3D G3DSA:3.40.50.1820 200 425 2.8E-40 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_17030 77784f2f07a70d69a7a1285dcfe757da 439 SUPERFAMILY SSF53474 203 421 2.58E-30 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_17030 77784f2f07a70d69a7a1285dcfe757da 439 Pfam PF07859 alpha/beta hydrolase fold 230 345 1.0E-11 T 13-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 RAM_32895 fdcf20458538514f60758bfc8a7f3f0c 404 Gene3D G3DSA:1.10.10.10 112 160 2.2E-6 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_32895 fdcf20458538514f60758bfc8a7f3f0c 404 Pfam PF04542 Sigma-70 region 2 11 69 1.2E-9 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_32895 fdcf20458538514f60758bfc8a7f3f0c 404 Gene3D G3DSA:1.10.1740.10 1 66 1.5E-5 T 13-10-2018 RAM_32895 fdcf20458538514f60758bfc8a7f3f0c 404 Pfam PF08281 Sigma-70, region 4 108 155 5.2E-9 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_32895 fdcf20458538514f60758bfc8a7f3f0c 404 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 10 156 6.4E-13 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_32895 fdcf20458538514f60758bfc8a7f3f0c 404 SUPERFAMILY SSF88659 96 157 3.71E-9 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_32895 fdcf20458538514f60758bfc8a7f3f0c 404 SUPERFAMILY SSF88946 3 78 1.29E-10 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_46720 9321df1592727fc6e6c005e902c26981 343 PIRSF PIRSF001359 6 341 2.6E-65 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 RAM_46720 9321df1592727fc6e6c005e902c26981 343 Gene3D G3DSA:3.20.20.70 1 343 4.1E-128 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_46720 9321df1592727fc6e6c005e902c26981 343 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 10 340 4.3E-73 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 RAM_46720 9321df1592727fc6e6c005e902c26981 343 Pfam PF01116 Fructose-bisphosphate aldolase class-II 9 339 1.0E-81 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 RAM_46720 9321df1592727fc6e6c005e902c26981 343 TIGRFAM TIGR01520 FruBisAldo_II_A: fructose-bisphosphate aldolase, class II 3 338 1.6E-138 T 13-10-2018 IPR006411 Fructose-bisphosphate aldolase, class II, yeast/E. coli subtype GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385 RAM_46720 9321df1592727fc6e6c005e902c26981 343 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 158 169 - T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 RAM_46720 9321df1592727fc6e6c005e902c26981 343 ProSitePatterns PS00602 Fructose-bisphosphate aldolase class-II signature 1. 86 97 - T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 RAM_46720 9321df1592727fc6e6c005e902c26981 343 SUPERFAMILY SSF51569 4 340 2.34E-98 T 13-10-2018 RAM_07670 0922a1845aa159549dc14503aeaf584f 435 Pfam PF00817 impB/mucB/samB family 8 156 2.2E-37 T 13-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 RAM_07670 0922a1845aa159549dc14503aeaf584f 435 Pfam PF11798 IMS family HHH motif 171 195 5.1E-6 T 13-10-2018 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 RAM_07670 0922a1845aa159549dc14503aeaf584f 435 Gene3D G3DSA:3.30.70.270 75 167 9.9E-23 T 13-10-2018 RAM_07670 0922a1845aa159549dc14503aeaf584f 435 Hamap MF_01113 DNA polymerase IV [dinB]. 2 355 31.839 T 13-10-2018 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 RAM_07670 0922a1845aa159549dc14503aeaf584f 435 Gene3D G3DSA:3.30.1490.100 243 348 6.4E-19 T 13-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 RAM_07670 0922a1845aa159549dc14503aeaf584f 435 Gene3D G3DSA:2.30.40.20 13 74 6.4E-21 T 13-10-2018 RAM_07670 0922a1845aa159549dc14503aeaf584f 435 Pfam PF11799 impB/mucB/samB family C-terminal domain 236 344 1.3E-17 T 13-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 RAM_07670 0922a1845aa159549dc14503aeaf584f 435 Gene3D G3DSA:1.10.150.20 172 239 6.7E-16 T 13-10-2018 RAM_07670 0922a1845aa159549dc14503aeaf584f 435 SUPERFAMILY SSF100879 242 340 7.26E-21 T 13-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 RAM_07670 0922a1845aa159549dc14503aeaf584f 435 SUPERFAMILY SSF56672 3 238 1.87E-64 T 13-10-2018 RAM_28590 d4660ef82c487640381a8b1930c67c2c 667 SUPERFAMILY SSF53756 281 652 2.01E-73 T 13-10-2018 RAM_28590 d4660ef82c487640381a8b1930c67c2c 667 Pfam PF13439 Glycosyltransferase Family 4 293 469 2.7E-29 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 RAM_28590 d4660ef82c487640381a8b1930c67c2c 667 Gene3D G3DSA:3.40.50.2000 478 635 4.1E-40 T 13-10-2018 RAM_28590 d4660ef82c487640381a8b1930c67c2c 667 Gene3D G3DSA:3.40.50.2000 278 477 1.4E-31 T 13-10-2018 RAM_28590 d4660ef82c487640381a8b1930c67c2c 667 Pfam PF00534 Glycosyl transferases group 1 480 632 2.5E-31 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 RAM_27705 d1d574ae79b13b908fd49ffa644c0795 419 Gene3D G3DSA:3.40.47.10 1 260 1.0E-70 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_27705 d1d574ae79b13b908fd49ffa644c0795 419 SUPERFAMILY SSF53901 220 417 1.65E-63 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_27705 d1d574ae79b13b908fd49ffa644c0795 419 SMART SM00825 Beta-ketoacyl synthase 5 408 2.3E-13 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RAM_27705 d1d574ae79b13b908fd49ffa644c0795 419 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 6 252 1.4E-50 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal RAM_27705 d1d574ae79b13b908fd49ffa644c0795 419 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 160 176 - T 13-10-2018 IPR018201 Beta-ketoacyl synthase, active site RAM_27705 d1d574ae79b13b908fd49ffa644c0795 419 SUPERFAMILY SSF53901 3 257 9.69E-63 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_27705 d1d574ae79b13b908fd49ffa644c0795 419 Gene3D G3DSA:3.40.47.10 264 419 7.2E-47 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_27705 d1d574ae79b13b908fd49ffa644c0795 419 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 260 374 2.2E-33 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal RAM_21270 4424c7249746dc36d3f2aa1c8361818b 171 Pfam PF02577 Bifunctional nuclease 9 133 2.0E-32 T 13-10-2018 IPR003729 Bifunctional nuclease domain GO:0004518 RAM_21270 4424c7249746dc36d3f2aa1c8361818b 171 Gene3D G3DSA:3.10.690.10 3 141 2.3E-32 T 13-10-2018 IPR036104 Bifunctional nuclease superfamily GO:0004518 RAM_21270 4424c7249746dc36d3f2aa1c8361818b 171 SUPERFAMILY SSF103256 5 138 1.57E-29 T 13-10-2018 IPR036104 Bifunctional nuclease superfamily GO:0004518 RAM_21565 4039fcb8969541a052beae58d2ba7d7a 166 Pfam PF03734 L,D-transpeptidase catalytic domain 62 165 1.4E-14 T 13-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 RAM_21565 4039fcb8969541a052beae58d2ba7d7a 166 Gene3D G3DSA:2.40.440.10 59 166 8.2E-18 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like RAM_21565 4039fcb8969541a052beae58d2ba7d7a 166 SUPERFAMILY SSF141523 61 165 4.45E-19 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like RAM_12755 8393e7812a04c59a420be56e3966bc17 362 SUPERFAMILY SSF56645 3 215 6.41E-32 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_12755 8393e7812a04c59a420be56e3966bc17 362 Gene3D G3DSA:1.20.140.10 228 361 3.1E-22 T 13-10-2018 RAM_12755 8393e7812a04c59a420be56e3966bc17 362 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 35 114 2.1E-14 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_12755 8393e7812a04c59a420be56e3966bc17 362 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 235 339 3.6E-15 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_12755 8393e7812a04c59a420be56e3966bc17 362 SUPERFAMILY SSF47203 234 359 5.8E-21 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_12755 8393e7812a04c59a420be56e3966bc17 362 Gene3D G3DSA:2.40.110.10 117 220 1.5E-16 T 13-10-2018 RAM_12755 8393e7812a04c59a420be56e3966bc17 362 Gene3D G3DSA:1.10.540.10 1 115 1.6E-20 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_29940 7d77e1cf37a8489e25b7cfb134c6cff3 118 SUPERFAMILY SSF46785 8 102 5.85E-25 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_29940 7d77e1cf37a8489e25b7cfb134c6cff3 118 Gene3D G3DSA:1.10.10.10 7 114 3.2E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_29940 7d77e1cf37a8489e25b7cfb134c6cff3 118 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 70 85 8.7E-14 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_29940 7d77e1cf37a8489e25b7cfb134c6cff3 118 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 55 70 8.7E-14 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_29940 7d77e1cf37a8489e25b7cfb134c6cff3 118 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 23 38 8.7E-14 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_29940 7d77e1cf37a8489e25b7cfb134c6cff3 118 SMART SM00418 21 99 1.2E-26 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_29940 7d77e1cf37a8489e25b7cfb134c6cff3 118 Pfam PF12840 Helix-turn-helix domain 22 78 4.3E-12 T 13-10-2018 RAM_03280 47e9eba083c856da9353fecd76a3f2df 330 SUPERFAMILY SSF55347 128 294 1.31E-36 T 13-10-2018 RAM_03280 47e9eba083c856da9353fecd76a3f2df 330 SUPERFAMILY SSF51735 3 153 1.9E-43 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_03280 47e9eba083c856da9353fecd76a3f2df 330 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 121 1.0E-20 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 RAM_03280 47e9eba083c856da9353fecd76a3f2df 330 Gene3D G3DSA:3.40.50.720 2 127 9.5E-35 T 13-10-2018 RAM_03280 47e9eba083c856da9353fecd76a3f2df 330 Gene3D G3DSA:3.30.360.10 128 322 5.6E-46 T 13-10-2018 RAM_27205 31ce0f463124d68ce09a33b2c04a8559 256 Gene3D G3DSA:3.90.226.10 2 256 1.9E-62 T 13-10-2018 RAM_27205 31ce0f463124d68ce09a33b2c04a8559 256 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 101 121 - T 13-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 RAM_27205 31ce0f463124d68ce09a33b2c04a8559 256 SUPERFAMILY SSF52096 3 252 2.69E-60 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_27205 31ce0f463124d68ce09a33b2c04a8559 256 Pfam PF00378 Enoyl-CoA hydratase/isomerase 10 254 1.0E-35 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RAM_33430 e29f9ad6258e7f75b756e6752f425613 481 Pfam PF07690 Major Facilitator Superfamily 27 420 4.1E-50 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_33430 e29f9ad6258e7f75b756e6752f425613 481 SUPERFAMILY SSF103473 22 469 1.27E-61 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_33430 e29f9ad6258e7f75b756e6752f425613 481 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 22 428 2.0E-84 T 13-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 RAM_33430 e29f9ad6258e7f75b756e6752f425613 481 PRINTS PR01036 Tetracycline resistance protein TetB signature 115 135 4.3E-9 T 13-10-2018 RAM_33430 e29f9ad6258e7f75b756e6752f425613 481 PRINTS PR01036 Tetracycline resistance protein TetB signature 24 48 4.3E-9 T 13-10-2018 RAM_33430 e29f9ad6258e7f75b756e6752f425613 481 PRINTS PR01036 Tetracycline resistance protein TetB signature 145 169 4.3E-9 T 13-10-2018 RAM_33430 e29f9ad6258e7f75b756e6752f425613 481 Gene3D G3DSA:1.20.1250.20 271 473 6.0E-17 T 13-10-2018 RAM_33430 e29f9ad6258e7f75b756e6752f425613 481 Gene3D G3DSA:1.20.1720.10 21 235 1.2E-41 T 13-10-2018 RAM_19675 ed46739fadb79599d864716227e3d78c 268 SUPERFAMILY SSF52096 16 262 4.07E-63 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_19675 ed46739fadb79599d864716227e3d78c 268 Gene3D G3DSA:1.10.12.10 207 266 1.1E-27 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal RAM_19675 ed46739fadb79599d864716227e3d78c 268 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 107 127 - T 13-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 RAM_19675 ed46739fadb79599d864716227e3d78c 268 Pfam PF00378 Enoyl-CoA hydratase/isomerase 19 263 1.5E-39 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RAM_19675 ed46739fadb79599d864716227e3d78c 268 Gene3D G3DSA:3.90.226.10 1 206 6.9E-65 T 13-10-2018 RAM_24895 8cf1bcdbfca7fc4f58d9483b838ed35a 500 Gene3D G3DSA:2.60.200.40 333 492 1.6E-16 T 13-10-2018 RAM_24895 8cf1bcdbfca7fc4f58d9483b838ed35a 500 Pfam PF00781 Diacylglycerol kinase catalytic domain 211 327 4.7E-15 T 13-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 RAM_24895 8cf1bcdbfca7fc4f58d9483b838ed35a 500 Gene3D G3DSA:3.40.50.10330 206 330 2.4E-14 T 13-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 RAM_24895 8cf1bcdbfca7fc4f58d9483b838ed35a 500 SMART SM00014 73 183 7.7E-22 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RAM_24895 8cf1bcdbfca7fc4f58d9483b838ed35a 500 Gene3D G3DSA:1.20.144.10 30 204 4.0E-13 T 13-10-2018 RAM_24895 8cf1bcdbfca7fc4f58d9483b838ed35a 500 SUPERFAMILY SSF48317 29 186 2.35E-29 T 13-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily RAM_24895 8cf1bcdbfca7fc4f58d9483b838ed35a 500 Pfam PF01569 PAP2 superfamily 77 186 1.2E-13 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RAM_24895 8cf1bcdbfca7fc4f58d9483b838ed35a 500 SMART SM00046 210 328 7.7E-4 T 13-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 RAM_24895 8cf1bcdbfca7fc4f58d9483b838ed35a 500 SUPERFAMILY SSF111331 210 498 4.58E-43 T 13-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily RAM_17035 c1e1647c801ca53046960b0f51c793c8 291 Pfam PF00296 Luciferase-like monooxygenase 1 234 8.6E-44 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_17035 c1e1647c801ca53046960b0f51c793c8 291 TIGRFAM TIGR03560 F420_Rv1855c: probable F420-dependent oxidoreductase, Rv1855c family 10 234 2.8E-92 T 13-10-2018 IPR019952 F420-dependent oxidoreductase-predicted, Rv1855c RAM_17035 c1e1647c801ca53046960b0f51c793c8 291 SUPERFAMILY SSF51679 1 259 1.03E-56 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_17035 c1e1647c801ca53046960b0f51c793c8 291 Gene3D G3DSA:3.20.20.30 1 284 1.8E-66 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_21955 4e3e339b847342442d55c308692132e6 378 PIRSF PIRSF001112 3 378 5.5E-102 T 13-10-2018 IPR016292 Epoxide hydrolase GO:0033961 Reactome: R-HSA-211945 RAM_21955 4e3e339b847342442d55c308692132e6 378 SUPERFAMILY SSF53474 3 375 4.59E-92 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_21955 4e3e339b847342442d55c308692132e6 378 PRINTS PR00412 Epoxide hydrolase signature 350 372 1.2E-12 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_21955 4e3e339b847342442d55c308692132e6 378 PRINTS PR00412 Epoxide hydrolase signature 188 201 1.2E-12 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_21955 4e3e339b847342442d55c308692132e6 378 PRINTS PR00412 Epoxide hydrolase signature 129 144 1.2E-12 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_21955 4e3e339b847342442d55c308692132e6 378 PRINTS PR00412 Epoxide hydrolase signature 106 124 1.2E-12 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_21955 4e3e339b847342442d55c308692132e6 378 Gene3D G3DSA:3.40.50.1820 3 378 3.9E-130 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_21955 4e3e339b847342442d55c308692132e6 378 Pfam PF06441 Epoxide hydrolase N terminus 8 115 1.3E-34 T 13-10-2018 IPR010497 Epoxide hydrolase, N-terminal Reactome: R-HSA-211945 RAM_44195 36fd9d396ed3e82c6508aad9f2994d98 539 TIGRFAM TIGR03222 benzo_boxC: benzoyl-CoA-dihydrodiol lyase 7 539 2.3E-248 T 13-10-2018 IPR017633 Benzoyl-CoA-dihydrodiol lyase KEGG: 00362+4.1.2.44|MetaCyc: PWY-1361 RAM_44195 36fd9d396ed3e82c6508aad9f2994d98 539 Gene3D G3DSA:3.90.226.10 7 539 8.9E-282 T 13-10-2018 RAM_44195 36fd9d396ed3e82c6508aad9f2994d98 539 SUPERFAMILY SSF52096 15 236 6.37E-35 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_44195 36fd9d396ed3e82c6508aad9f2994d98 539 Gene3D G3DSA:3.90.226.10 253 474 8.9E-282 T 13-10-2018 RAM_44195 36fd9d396ed3e82c6508aad9f2994d98 539 SUPERFAMILY SSF52096 286 529 3.05E-13 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_44195 36fd9d396ed3e82c6508aad9f2994d98 539 Pfam PF00378 Enoyl-CoA hydratase/isomerase 48 238 5.7E-23 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RAM_16835 c949ded7724dbdd2a703b13c2ab2fe5e 126 Pfam PF05331 Protein of unknown function (DUF742) 12 126 4.0E-30 T 13-10-2018 IPR007995 Protein of unknown function DUF742 RAM_40510 325e822bc4aabd395d0131e7e54c2ca3 461 Gene3D G3DSA:3.30.465.40 7 222 1.0E-66 T 13-10-2018 RAM_40510 325e822bc4aabd395d0131e7e54c2ca3 461 SUPERFAMILY SSF55103 219 458 2.13E-51 T 13-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 RAM_40510 325e822bc4aabd395d0131e7e54c2ca3 461 SUPERFAMILY SSF56176 2 213 3.27E-64 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RAM_40510 325e822bc4aabd395d0131e7e54c2ca3 461 Gene3D G3DSA:1.10.45.10 416 455 4.2E-11 T 13-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 RAM_40510 325e822bc4aabd395d0131e7e54c2ca3 461 Pfam PF01565 FAD binding domain 40 178 8.3E-39 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RAM_40510 325e822bc4aabd395d0131e7e54c2ca3 461 Pfam PF02913 FAD linked oxidases, C-terminal domain 217 453 2.3E-52 T 13-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 RAM_40510 325e822bc4aabd395d0131e7e54c2ca3 461 Gene3D G3DSA:3.30.70.2740 339 415 7.8E-13 T 13-10-2018 RAM_01675 982972731809df708681c1f279166ffa 403 Pfam PF05426 Alginate lyase 89 325 1.8E-66 T 13-10-2018 IPR008397 Alginate lyase domain GO:0016829|GO:0042597 KEGG: 00051+4.2.2.3|MetaCyc: PWY-6986 RAM_01675 982972731809df708681c1f279166ffa 403 SUPERFAMILY SSF48230 82 324 1.19E-35 T 13-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 RAM_01675 982972731809df708681c1f279166ffa 403 Gene3D G3DSA:1.50.10.100 45 326 2.7E-98 T 13-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 RAM_12650 7e1f43c7072967dff5db1d75b32fb1d6 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 20 33 6.1E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_12650 7e1f43c7072967dff5db1d75b32fb1d6 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 40 63 6.1E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_12650 7e1f43c7072967dff5db1d75b32fb1d6 187 SUPERFAMILY SSF48498 85 187 7.05E-12 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_12650 7e1f43c7072967dff5db1d75b32fb1d6 187 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 65 9.2E-14 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_12650 7e1f43c7072967dff5db1d75b32fb1d6 187 SUPERFAMILY SSF46689 7 87 3.89E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_12650 7e1f43c7072967dff5db1d75b32fb1d6 187 Gene3D G3DSA:1.10.357.10 3 187 4.0E-55 T 13-10-2018 RAM_23705 c5a03abef979094554e71c3992b7d32b 341 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 137 339 4.5E-40 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_23705 c5a03abef979094554e71c3992b7d32b 341 SUPERFAMILY SSF161098 114 324 1.96E-17 T 13-10-2018 IPR035906 MetI-like superfamily RAM_23705 c5a03abef979094554e71c3992b7d32b 341 Gene3D G3DSA:1.10.3720.10 109 335 1.6E-22 T 13-10-2018 IPR035906 MetI-like superfamily RAM_31155 ed192a3aaf1276bb3f146d72692699d4 147 Gene3D G3DSA:3.30.530.20 17 146 2.8E-12 T 13-10-2018 IPR023393 START-like domain superfamily RAM_31155 ed192a3aaf1276bb3f146d72692699d4 147 SUPERFAMILY SSF55961 19 146 6.38E-15 T 13-10-2018 RAM_31155 ed192a3aaf1276bb3f146d72692699d4 147 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 19 135 6.3E-7 T 13-10-2018 IPR019587 Polyketide cyclase/dehydrase RAM_44345 a798adff433caf1da7ecd29a47069dd3 242 Pfam PF09339 IclR helix-turn-helix domain 1 43 5.8E-8 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RAM_44345 a798adff433caf1da7ecd29a47069dd3 242 Gene3D G3DSA:3.30.450.40 64 239 1.7E-51 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_44345 a798adff433caf1da7ecd29a47069dd3 242 SMART SM00346 1 81 1.1E-9 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RAM_44345 a798adff433caf1da7ecd29a47069dd3 242 SUPERFAMILY SSF46785 1 63 1.47E-9 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_44345 a798adff433caf1da7ecd29a47069dd3 242 SUPERFAMILY SSF55781 57 236 7.85E-46 T 13-10-2018 RAM_44345 a798adff433caf1da7ecd29a47069dd3 242 Gene3D G3DSA:1.10.10.10 1 63 6.2E-13 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_44345 a798adff433caf1da7ecd29a47069dd3 242 Pfam PF01614 Bacterial transcriptional regulator 110 231 4.8E-29 T 13-10-2018 IPR014757 Transcription regulator IclR, C-terminal RAM_01050 3bed236f0be5cddfcdf51c15e0611761 318 SUPERFAMILY SSF51735 4 172 2.96E-31 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_01050 3bed236f0be5cddfcdf51c15e0611761 318 Gene3D G3DSA:3.40.50.720 4 292 7.7E-47 T 13-10-2018 RAM_01050 3bed236f0be5cddfcdf51c15e0611761 318 Gene3D G3DSA:3.30.360.10 123 275 7.7E-47 T 13-10-2018 RAM_01050 3bed236f0be5cddfcdf51c15e0611761 318 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 115 6.9E-19 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 RAM_13610 90a83ef55dbf754db1ea1e2f5d70b910 243 SUPERFAMILY SSF53597 25 240 1.83E-39 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RAM_13610 90a83ef55dbf754db1ea1e2f5d70b910 243 Pfam PF01872 RibD C-terminal domain 27 227 2.1E-32 T 13-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 RAM_13610 90a83ef55dbf754db1ea1e2f5d70b910 243 Gene3D G3DSA:3.40.430.10 4 242 8.5E-61 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RAM_20340 ba058dfe6b8b58efffae552700762ae1 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 29 52 5.6E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_20340 ba058dfe6b8b58efffae552700762ae1 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 8 21 5.6E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_20340 ba058dfe6b8b58efffae552700762ae1 199 SUPERFAMILY SSF46689 3 69 2.44E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_20340 ba058dfe6b8b58efffae552700762ae1 199 Pfam PF00440 Bacterial regulatory proteins, tetR family 8 53 2.1E-14 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_20340 ba058dfe6b8b58efffae552700762ae1 199 SUPERFAMILY SSF48498 77 168 8.9E-11 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_20340 ba058dfe6b8b58efffae552700762ae1 199 Gene3D G3DSA:1.10.357.10 1 187 3.2E-71 T 13-10-2018 RAM_12720 fe4ea06b3b93100d26c64a4695ce8ef3 684 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 433 525 3.6E-19 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RAM_12720 fe4ea06b3b93100d26c64a4695ce8ef3 684 SUPERFAMILY SSF47203 194 313 4.03E-30 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_12720 fe4ea06b3b93100d26c64a4695ce8ef3 684 SUPERFAMILY SSF47203 539 681 3.38E-14 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_12720 fe4ea06b3b93100d26c64a4695ce8ef3 684 Gene3D G3DSA:2.40.110.10 433 543 4.4E-33 T 13-10-2018 RAM_12720 fe4ea06b3b93100d26c64a4695ce8ef3 684 Gene3D G3DSA:1.10.540.10 326 430 5.8E-11 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_12720 fe4ea06b3b93100d26c64a4695ce8ef3 684 SUPERFAMILY SSF56645 1 181 1.57E-11 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_12720 fe4ea06b3b93100d26c64a4695ce8ef3 684 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 353 429 6.3E-7 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_12720 fe4ea06b3b93100d26c64a4695ce8ef3 684 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 111 2.6E-5 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_12720 fe4ea06b3b93100d26c64a4695ce8ef3 684 Gene3D G3DSA:1.20.140.10 193 322 5.6E-31 T 13-10-2018 RAM_12720 fe4ea06b3b93100d26c64a4695ce8ef3 684 Gene3D G3DSA:1.10.540.10 3 112 5.7E-13 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_12720 fe4ea06b3b93100d26c64a4695ce8ef3 684 Gene3D G3DSA:1.20.140.10 544 684 9.1E-20 T 13-10-2018 RAM_12720 fe4ea06b3b93100d26c64a4695ce8ef3 684 SUPERFAMILY SSF56645 350 552 4.45E-55 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_12720 fe4ea06b3b93100d26c64a4695ce8ef3 684 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 539 679 1.2E-13 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_12720 fe4ea06b3b93100d26c64a4695ce8ef3 684 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 197 311 4.7E-21 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_28045 7dc5f3cce6df4e97e49cf8076b3a8e16 268 Gene3D G3DSA:3.60.15.10 3 237 5.2E-29 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_28045 7dc5f3cce6df4e97e49cf8076b3a8e16 268 SMART SM00849 19 202 6.0E-14 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_28045 7dc5f3cce6df4e97e49cf8076b3a8e16 268 SUPERFAMILY SSF56281 20 245 2.24E-33 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_28045 7dc5f3cce6df4e97e49cf8076b3a8e16 268 Pfam PF00753 Metallo-beta-lactamase superfamily 19 202 9.2E-14 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_47865 9809ce4892d52fa5f15a5f6bb1559909 194 SUPERFAMILY SSF82607 34 116 5.89E-6 T 13-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily RAM_47865 9809ce4892d52fa5f15a5f6bb1559909 194 Pfam PF02575 YbaB/EbfC DNA-binding family 29 115 1.4E-9 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family RAM_47865 9809ce4892d52fa5f15a5f6bb1559909 194 Gene3D G3DSA:3.30.1310.10 22 122 3.1E-8 T 13-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily RAM_07100 f727d13774ac3e94aadfa324b133b90d 484 Pfam PF00171 Aldehyde dehydrogenase family 13 478 3.7E-155 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RAM_07100 f727d13774ac3e94aadfa324b133b90d 484 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 252 259 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 RAM_07100 f727d13774ac3e94aadfa324b133b90d 484 SUPERFAMILY SSF53720 3 480 1.96E-155 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RAM_07100 f727d13774ac3e94aadfa324b133b90d 484 Gene3D G3DSA:3.40.309.10 256 447 3.3E-164 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RAM_07100 f727d13774ac3e94aadfa324b133b90d 484 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 280 291 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 RAM_07100 f727d13774ac3e94aadfa324b133b90d 484 Gene3D G3DSA:3.40.605.10 22 476 3.3E-164 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RAM_34520 7211bf9d20dc79c41b94230b652e663b 477 Gene3D G3DSA:1.10.260.150 49 338 2.3E-63 T 13-10-2018 RAM_34520 7211bf9d20dc79c41b94230b652e663b 477 Pfam PF13399 LytR cell envelope-related transcriptional attenuator 365 448 1.3E-11 T 13-10-2018 IPR027381 Putative LytR/CpsA/Psr regulator, C-terminal domain RAM_34520 7211bf9d20dc79c41b94230b652e663b 477 Pfam PF03816 Cell envelope-related transcriptional attenuator domain 92 259 2.2E-39 T 13-10-2018 IPR004474 Cell envelope-related transcriptional attenuator domain RAM_34520 7211bf9d20dc79c41b94230b652e663b 477 Gene3D G3DSA:3.30.70.2390 363 444 3.5E-5 T 13-10-2018 RAM_34520 7211bf9d20dc79c41b94230b652e663b 477 TIGRFAM TIGR00350 lytR_cpsA_psr: cell envelope-related function transcriptional attenuator common domain 92 260 2.8E-35 T 13-10-2018 IPR004474 Cell envelope-related transcriptional attenuator domain RAM_07735 198c3edff5a2017e8524c0d1c5d725c5 151 Pfam PF14342 Domain of unknown function (DUF4396) 8 140 4.5E-39 T 13-10-2018 IPR025509 Domain of unknown function DUF4396 RAM_36625 37a5691efed70bdff966cc58fe52c944 305 PIRSF PIRSF015582 2 305 4.0E-79 T 13-10-2018 IPR011206 Citrate lyase beta subunit-like RAM_36625 37a5691efed70bdff966cc58fe52c944 305 Gene3D G3DSA:3.20.20.60 2 304 8.2E-97 T 13-10-2018 RAM_36625 37a5691efed70bdff966cc58fe52c944 305 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 11 238 1.2E-41 T 13-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 RAM_36625 37a5691efed70bdff966cc58fe52c944 305 SUPERFAMILY SSF51621 6 248 1.35E-61 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 RAM_28300 6aa2d336b7691624a5ba3d0700ee637f 159 Pfam PF02575 YbaB/EbfC DNA-binding family 24 102 6.7E-8 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family RAM_28300 6aa2d336b7691624a5ba3d0700ee637f 159 SUPERFAMILY SSF82607 26 104 1.44E-6 T 13-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily RAM_28300 6aa2d336b7691624a5ba3d0700ee637f 159 Gene3D G3DSA:3.30.1310.10 13 107 2.6E-5 T 13-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily RAM_12710 1de815b9c4fd55ad4dfffd6fc10ffa26 276 SUPERFAMILY SSF51679 20 270 2.22E-53 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_12710 1de815b9c4fd55ad4dfffd6fc10ffa26 276 Pfam PF00296 Luciferase-like monooxygenase 22 228 8.3E-47 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_12710 1de815b9c4fd55ad4dfffd6fc10ffa26 276 Gene3D G3DSA:3.20.20.30 3 275 2.9E-64 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_12710 1de815b9c4fd55ad4dfffd6fc10ffa26 276 TIGRFAM TIGR03619 F420_Rv2161c: probable F420-dependent oxidoreductase, Rv2161c family 19 251 2.5E-80 T 13-10-2018 IPR019921 Luciferase-like, F420-dependent oxidoreductase, Rv2161c, predicted RAM_23815 d3645a38a820ec9bd4bede25921c80cb 106 SUPERFAMILY SSF46785 5 96 6.57E-28 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_23815 d3645a38a820ec9bd4bede25921c80cb 106 Gene3D G3DSA:1.10.10.10 4 106 3.3E-33 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_23815 d3645a38a820ec9bd4bede25921c80cb 106 SMART SM00418 6 80 1.1E-24 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_23815 d3645a38a820ec9bd4bede25921c80cb 106 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 55 70 5.5E-13 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_23815 d3645a38a820ec9bd4bede25921c80cb 106 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 40 55 5.5E-13 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_23815 d3645a38a820ec9bd4bede25921c80cb 106 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 8 23 5.5E-13 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_23815 d3645a38a820ec9bd4bede25921c80cb 106 Pfam PF12840 Helix-turn-helix domain 5 64 3.3E-18 T 13-10-2018 RAM_07825 445104734782c0c9005125f3aa8ac2c6 350 Gene3D G3DSA:3.40.190.10 39 136 1.1E-8 T 13-10-2018 RAM_07825 445104734782c0c9005125f3aa8ac2c6 350 Pfam PF13379 NMT1-like family 41 268 7.0E-33 T 13-10-2018 RAM_07825 445104734782c0c9005125f3aa8ac2c6 350 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 43 329 2.1E-56 T 13-10-2018 IPR010067 Aliphatic sulfonates-binding protein GO:0016020|GO:0042626 RAM_07825 445104734782c0c9005125f3aa8ac2c6 350 SUPERFAMILY SSF53850 42 265 3.32E-41 T 13-10-2018 RAM_07825 445104734782c0c9005125f3aa8ac2c6 350 Gene3D G3DSA:3.40.190.10 145 334 1.1E-25 T 13-10-2018 RAM_27590 eb8f758b8b2c30087669ddc6b1bf6272 375 Gene3D G3DSA:3.40.50.2000 1 364 4.8E-102 T 13-10-2018 RAM_27590 eb8f758b8b2c30087669ddc6b1bf6272 375 Gene3D G3DSA:3.40.50.2000 187 360 4.8E-102 T 13-10-2018 RAM_27590 eb8f758b8b2c30087669ddc6b1bf6272 375 SUPERFAMILY SSF53756 1 365 1.19E-66 T 13-10-2018 RAM_27590 eb8f758b8b2c30087669ddc6b1bf6272 375 Pfam PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 279 352 3.9E-7 T 13-10-2018 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0016758 Reactome: R-HSA-156588 RAM_27590 eb8f758b8b2c30087669ddc6b1bf6272 375 Pfam PF06722 Protein of unknown function (DUF1205) 169 249 2.3E-8 T 13-10-2018 IPR010610 Domain of unknown function DUF1205 RAM_19425 b645f85f4a48be237612a04f3f954602 339 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 158 179 - T 13-10-2018 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 RAM_19425 b645f85f4a48be237612a04f3f954602 339 Gene3D G3DSA:3.40.50.720 142 265 7.0E-65 T 13-10-2018 RAM_19425 b645f85f4a48be237612a04f3f954602 339 Pfam PF13602 Zinc-binding dehydrogenase 200 314 2.0E-10 T 13-10-2018 RAM_19425 b645f85f4a48be237612a04f3f954602 339 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 37 100 1.6E-7 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_19425 b645f85f4a48be237612a04f3f954602 339 SUPERFAMILY SSF51735 131 259 1.97E-23 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_19425 b645f85f4a48be237612a04f3f954602 339 SUPERFAMILY SSF50129 8 165 2.43E-29 T 13-10-2018 IPR011032 GroES-like superfamily RAM_19425 b645f85f4a48be237612a04f3f954602 339 Gene3D G3DSA:3.90.180.10 19 313 7.0E-65 T 13-10-2018 RAM_19425 b645f85f4a48be237612a04f3f954602 339 SMART SM00829 20 314 1.1E-12 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_38750 f825888cb7304b2fcadaf54451fb07ef 466 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 49 63 9.6E-5 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_38750 f825888cb7304b2fcadaf54451fb07ef 466 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 63 79 9.6E-5 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_38750 f825888cb7304b2fcadaf54451fb07ef 466 Pfam PF00155 Aminotransferase class I and II 125 413 6.3E-16 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RAM_38750 f825888cb7304b2fcadaf54451fb07ef 466 Gene3D G3DSA:3.40.640.10 105 457 6.0E-95 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_38750 f825888cb7304b2fcadaf54451fb07ef 466 SUPERFAMILY SSF46785 23 98 9.37E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_38750 f825888cb7304b2fcadaf54451fb07ef 466 Gene3D G3DSA:1.10.10.10 28 97 6.6E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_38750 f825888cb7304b2fcadaf54451fb07ef 466 SMART SM00345 30 89 1.9E-16 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_38750 f825888cb7304b2fcadaf54451fb07ef 466 Pfam PF00392 Bacterial regulatory proteins, gntR family 30 89 3.7E-16 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_38750 f825888cb7304b2fcadaf54451fb07ef 466 SUPERFAMILY SSF53383 84 463 1.33E-65 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_30905 243363f9d64d7cbdac99f1f808cbf2d1 308 Hamap MF_00361 NAD kinase [nadK]. 5 294 29.537 T 13-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 RAM_30905 243363f9d64d7cbdac99f1f808cbf2d1 308 Gene3D G3DSA:2.60.200.30 135 271 1.2E-90 T 13-10-2018 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal GO:0003951|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 RAM_30905 243363f9d64d7cbdac99f1f808cbf2d1 308 Pfam PF01513 ATP-NAD kinase 10 279 1.7E-60 T 13-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 RAM_30905 243363f9d64d7cbdac99f1f808cbf2d1 308 Gene3D G3DSA:3.40.50.10330 65 292 1.2E-90 T 13-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 RAM_30905 243363f9d64d7cbdac99f1f808cbf2d1 308 SUPERFAMILY SSF111331 6 300 1.02E-77 T 13-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily RAM_21800 0f0476e404c4a132e0a108a4850b05d6 204 Gene3D G3DSA:1.20.58.220 10 204 2.9E-58 T 13-10-2018 IPR038078 PhoU-like domain superfamily RAM_21800 0f0476e404c4a132e0a108a4850b05d6 204 Pfam PF01865 Protein of unknown function DUF47 8 201 5.4E-25 T 13-10-2018 IPR018445 Putative phosphate transport regulator RAM_08010 cf1381138a822f001a8fcf2203af1ec0 151 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 13 128 1.3E-22 T 13-10-2018 RAM_08010 cf1381138a822f001a8fcf2203af1ec0 151 TIGRFAM TIGR03081 metmalonyl_epim: methylmalonyl-CoA epimerase 12 143 3.8E-40 T 13-10-2018 IPR017515 Methylmalonyl-CoA epimerase KEGG: 00280+5.1.99.1|KEGG: 00630+5.1.99.1|KEGG: 00640+5.1.99.1|KEGG: 00720+5.1.99.1|MetaCyc: PWY-5741|MetaCyc: PWY-5743|MetaCyc: PWY-5789|MetaCyc: PWY-6728|MetaCyc: PWY-7384|MetaCyc: PWY-7854|Reactome: R-HSA-71032 RAM_08010 cf1381138a822f001a8fcf2203af1ec0 151 SUPERFAMILY SSF54593 9 144 6.44E-32 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_08010 cf1381138a822f001a8fcf2203af1ec0 151 Gene3D G3DSA:3.10.180.10 6 145 1.9E-38 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_11700 f138d5c9f4655b58209ded7387787f89 218 SUPERFAMILY SSF55846 38 212 1.57E-44 T 13-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 RAM_11700 f138d5c9f4655b58209ded7387787f89 218 SMART SM00701 38 192 1.4E-6 T 13-10-2018 IPR006619 Peptidoglycan recognition protein family domain, metazoa/bacteria GO:0008270|GO:0008745|GO:0009253 Reactome: R-HSA-6803157 RAM_11700 f138d5c9f4655b58209ded7387787f89 218 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 61 198 1.1E-18 T 13-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 RAM_11700 f138d5c9f4655b58209ded7387787f89 218 Gene3D G3DSA:3.40.80.10 32 214 2.2E-48 T 13-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 RAM_11700 f138d5c9f4655b58209ded7387787f89 218 SMART SM00644 50 198 8.3E-5 T 13-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 RAM_00380 95b2e99a5ab509949120284621f10fbd 173 Gene3D G3DSA:1.10.10.10 108 170 1.5E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_00380 95b2e99a5ab509949120284621f10fbd 173 Pfam PF04542 Sigma-70 region 2 18 82 2.9E-11 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_00380 95b2e99a5ab509949120284621f10fbd 173 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 16 163 4.5E-22 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_00380 95b2e99a5ab509949120284621f10fbd 173 SUPERFAMILY SSF88659 104 165 3.27E-14 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_00380 95b2e99a5ab509949120284621f10fbd 173 Pfam PF08281 Sigma-70, region 4 112 162 4.5E-16 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_00380 95b2e99a5ab509949120284621f10fbd 173 SMART SM00421 116 170 0.0075 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_00380 95b2e99a5ab509949120284621f10fbd 173 Gene3D G3DSA:1.10.1740.10 1 78 2.8E-15 T 13-10-2018 RAM_00380 95b2e99a5ab509949120284621f10fbd 173 SUPERFAMILY SSF88946 8 92 2.75E-16 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_39860 9a3c1b1fa59e32e37fb205523b47db78 333 SUPERFAMILY SSF46689 270 320 1.43E-5 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_39860 9a3c1b1fa59e32e37fb205523b47db78 333 SUPERFAMILY SSF52317 7 198 2.93E-40 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_39860 9a3c1b1fa59e32e37fb205523b47db78 333 SMART SM00342 233 316 3.5E-18 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_39860 9a3c1b1fa59e32e37fb205523b47db78 333 Pfam PF12833 Helix-turn-helix domain 240 317 5.2E-16 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_39860 9a3c1b1fa59e32e37fb205523b47db78 333 SUPERFAMILY SSF46689 220 267 3.81E-5 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_39860 9a3c1b1fa59e32e37fb205523b47db78 333 Pfam PF01965 DJ-1/PfpI family 76 176 1.9E-9 T 13-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 RAM_39860 9a3c1b1fa59e32e37fb205523b47db78 333 Gene3D G3DSA:1.10.10.60 218 322 1.6E-20 T 13-10-2018 RAM_39860 9a3c1b1fa59e32e37fb205523b47db78 333 Gene3D G3DSA:3.40.50.880 7 209 2.8E-47 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_41375 f70e51922bd1f84aab8ebd59cf9091ed 301 Pfam PF02646 RmuC family 57 260 6.5E-37 T 13-10-2018 IPR003798 DNA recombination RmuC RAM_17000 bb24754c1d109e8e7410665b3afc0462 1047 Gene3D G3DSA:2.60.40.2340 661 746 3.6E-13 T 13-10-2018 RAM_17000 bb24754c1d109e8e7410665b3afc0462 1047 Gene3D G3DSA:2.115.10.20 747 1029 7.4E-91 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily RAM_17000 bb24754c1d109e8e7410665b3afc0462 1047 SUPERFAMILY SSF75005 750 1036 3.53E-71 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily RAM_17000 bb24754c1d109e8e7410665b3afc0462 1047 Pfam PF04616 Glycosyl hydrolases family 43 179 390 1.5E-6 T 13-10-2018 IPR006710 Glycoside hydrolase, family 43 GO:0004553|GO:0005975 RAM_17000 bb24754c1d109e8e7410665b3afc0462 1047 Pfam PF04616 Glycosyl hydrolases family 43 750 1022 6.0E-65 T 13-10-2018 IPR006710 Glycoside hydrolase, family 43 GO:0004553|GO:0005975 RAM_17000 bb24754c1d109e8e7410665b3afc0462 1047 SUPERFAMILY SSF49899 450 662 2.11E-26 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily RAM_17000 bb24754c1d109e8e7410665b3afc0462 1047 Gene3D G3DSA:2.115.10.20 160 437 2.2E-24 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily RAM_17000 bb24754c1d109e8e7410665b3afc0462 1047 Gene3D G3DSA:2.60.120.200 452 660 6.6E-25 T 13-10-2018 RAM_17000 bb24754c1d109e8e7410665b3afc0462 1047 SUPERFAMILY SSF75005 179 432 7.85E-27 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily RAM_17000 bb24754c1d109e8e7410665b3afc0462 1047 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 495 659 5.2E-17 T 13-10-2018 RAM_23110 dfaadc1cb5dc9038dc80d0155a0c6c51 348 SUPERFAMILY SSF53822 73 346 1.49E-64 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_23110 dfaadc1cb5dc9038dc80d0155a0c6c51 348 SUPERFAMILY SSF47413 13 70 3.06E-15 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_23110 dfaadc1cb5dc9038dc80d0155a0c6c51 348 Gene3D G3DSA:3.40.50.2300 174 343 1.3E-73 T 13-10-2018 RAM_23110 dfaadc1cb5dc9038dc80d0155a0c6c51 348 Pfam PF00356 Bacterial regulatory proteins, lacI family 15 59 2.1E-16 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_23110 dfaadc1cb5dc9038dc80d0155a0c6c51 348 Gene3D G3DSA:3.40.50.2300 77 338 1.3E-73 T 13-10-2018 RAM_23110 dfaadc1cb5dc9038dc80d0155a0c6c51 348 SMART SM00354 12 82 9.3E-21 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_23110 dfaadc1cb5dc9038dc80d0155a0c6c51 348 Pfam PF13377 Periplasmic binding protein-like domain 182 346 2.3E-38 T 13-10-2018 RAM_23110 dfaadc1cb5dc9038dc80d0155a0c6c51 348 Gene3D G3DSA:1.10.260.40 7 70 1.7E-20 T 13-10-2018 RAM_23110 dfaadc1cb5dc9038dc80d0155a0c6c51 348 ProSitePatterns PS00356 LacI-type HTH domain signature. 15 33 - T 13-10-2018 RAM_05390 875bf4211d39aa53c4dbe747cd253ec9 264 Gene3D G3DSA:3.90.226.10 2 206 2.2E-69 T 13-10-2018 RAM_05390 875bf4211d39aa53c4dbe747cd253ec9 264 SUPERFAMILY SSF52096 4 263 3.82E-82 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_05390 875bf4211d39aa53c4dbe747cd253ec9 264 Gene3D G3DSA:1.10.12.10 207 264 3.4E-19 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal RAM_05390 875bf4211d39aa53c4dbe747cd253ec9 264 Pfam PF00378 Enoyl-CoA hydratase/isomerase 13 263 1.3E-61 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RAM_26885 3f3e06f7bb075a25aa3e6b054f67995e 984 SMART SM00862 10 91 4.1E-9 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_26885 3f3e06f7bb075a25aa3e6b054f67995e 984 SUPERFAMILY SSF52540 251 455 1.24E-18 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_26885 3f3e06f7bb075a25aa3e6b054f67995e 984 SUPERFAMILY SSF48452 670 823 5.24E-14 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_26885 3f3e06f7bb075a25aa3e6b054f67995e 984 SMART SM01043 98 238 3.6E-21 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_26885 3f3e06f7bb075a25aa3e6b054f67995e 984 Gene3D G3DSA:1.25.40.10 813 982 6.1E-20 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_26885 3f3e06f7bb075a25aa3e6b054f67995e 984 Pfam PF00931 NB-ARC domain 278 455 6.2E-10 T 13-10-2018 IPR002182 NB-ARC GO:0043531 Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-6798695|Reactome: R-HSA-6803207|Reactome: R-HSA-8953750 RAM_26885 3f3e06f7bb075a25aa3e6b054f67995e 984 Gene3D G3DSA:3.40.50.300 252 394 4.3E-21 T 13-10-2018 RAM_26885 3f3e06f7bb075a25aa3e6b054f67995e 984 Pfam PF00486 Transcriptional regulatory protein, C terminal 21 71 5.4E-9 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_26885 3f3e06f7bb075a25aa3e6b054f67995e 984 Gene3D G3DSA:1.25.40.10 651 805 1.0E-20 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_26885 3f3e06f7bb075a25aa3e6b054f67995e 984 SUPERFAMILY SSF48452 93 256 9.74E-22 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_26885 3f3e06f7bb075a25aa3e6b054f67995e 984 SUPERFAMILY SSF46894 13 71 4.82E-10 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_26885 3f3e06f7bb075a25aa3e6b054f67995e 984 SUPERFAMILY SSF48452 802 957 7.59E-12 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_26885 3f3e06f7bb075a25aa3e6b054f67995e 984 SMART SM00028 676 709 62.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_26885 3f3e06f7bb075a25aa3e6b054f67995e 984 SMART SM00028 716 749 110.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_26885 3f3e06f7bb075a25aa3e6b054f67995e 984 SMART SM00028 876 909 35.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_26885 3f3e06f7bb075a25aa3e6b054f67995e 984 SMART SM00028 756 789 200.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_26885 3f3e06f7bb075a25aa3e6b054f67995e 984 Gene3D G3DSA:1.25.40.10 96 251 2.8E-29 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_26885 3f3e06f7bb075a25aa3e6b054f67995e 984 Pfam PF03704 Bacterial transcriptional activator domain 99 237 4.2E-20 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_26885 3f3e06f7bb075a25aa3e6b054f67995e 984 Gene3D G3DSA:1.10.10.10 1 94 9.6E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_47350 7defdd15c06e591e7f6a2c21fcdad4e5 280 Gene3D G3DSA:3.10.129.10 32 280 1.6E-84 T 13-10-2018 RAM_47350 7defdd15c06e591e7f6a2c21fcdad4e5 280 SUPERFAMILY SSF54637 66 163 4.88E-10 T 13-10-2018 IPR029069 HotDog domain superfamily RAM_47350 7defdd15c06e591e7f6a2c21fcdad4e5 280 Pfam PF01575 MaoC like domain 184 256 5.8E-15 T 13-10-2018 IPR002539 MaoC-like dehydratase domain RAM_47350 7defdd15c06e591e7f6a2c21fcdad4e5 280 SUPERFAMILY SSF54637 174 277 1.55E-22 T 13-10-2018 IPR029069 HotDog domain superfamily RAM_47350 7defdd15c06e591e7f6a2c21fcdad4e5 280 PRINTS PR01483 Fatty acid synthase signature 180 202 7.4E-6 T 13-10-2018 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 RAM_47350 7defdd15c06e591e7f6a2c21fcdad4e5 280 PRINTS PR01483 Fatty acid synthase signature 202 223 7.4E-6 T 13-10-2018 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 RAM_36350 4ee89dcfbac77b9fe6f402fed0a0d96b 545 Gene3D G3DSA:1.10.150.130 123 250 2.1E-20 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal RAM_36350 4ee89dcfbac77b9fe6f402fed0a0d96b 545 SUPERFAMILY SSF56349 128 468 3.53E-49 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RAM_36350 4ee89dcfbac77b9fe6f402fed0a0d96b 545 Pfam PF00589 Phage integrase family 290 461 1.8E-18 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RAM_36350 4ee89dcfbac77b9fe6f402fed0a0d96b 545 Gene3D G3DSA:1.10.443.10 286 473 2.7E-46 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 RAM_20315 991dae23926c634b4c84501bce3a1b02 453 SMART SM00458 315 451 3.7E-8 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_20315 991dae23926c634b4c84501bce3a1b02 453 Gene3D G3DSA:2.80.10.50 280 359 2.3E-10 T 13-10-2018 RAM_20315 991dae23926c634b4c84501bce3a1b02 453 SUPERFAMILY SSF53474 55 214 1.59E-12 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_20315 991dae23926c634b4c84501bce3a1b02 453 SUPERFAMILY SSF50370 318 451 1.0E-36 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_20315 991dae23926c634b4c84501bce3a1b02 453 Gene3D G3DSA:2.80.10.50 360 451 2.2E-24 T 13-10-2018 RAM_20315 991dae23926c634b4c84501bce3a1b02 453 Gene3D G3DSA:3.40.50.1820 20 275 2.5E-26 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_20315 991dae23926c634b4c84501bce3a1b02 453 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 398 451 4.4E-11 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_20315 991dae23926c634b4c84501bce3a1b02 453 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 314 390 6.0E-18 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_29895 6c93f6253a18425113e50e33ebb11fb2 143 SMART SM00637 40 140 5.2E-37 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_29895 6c93f6253a18425113e50e33ebb11fb2 143 Pfam PF00553 Cellulose binding domain 40 140 4.2E-32 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_29895 6c93f6253a18425113e50e33ebb11fb2 143 SUPERFAMILY SSF49384 38 140 1.53E-30 T 13-10-2018 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily GO:0030246 RAM_29895 6c93f6253a18425113e50e33ebb11fb2 143 Gene3D G3DSA:2.60.40.290 35 142 1.3E-33 T 13-10-2018 IPR012291 CBM2, carbohydrate-binding domain superfamily GO:0004553|GO:0030247 RAM_25920 7791bccef3b64082b2a645a09462ed97 299 Pfam PF10370 Domain of unknown function (DUF2437) 1 63 3.2E-6 T 13-10-2018 IPR018833 Domain of unknown function DUF2437 RAM_25920 7791bccef3b64082b2a645a09462ed97 299 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 69 281 9.4E-51 T 13-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 RAM_25920 7791bccef3b64082b2a645a09462ed97 299 Gene3D G3DSA:3.90.850.10 1 282 1.5E-71 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 RAM_25920 7791bccef3b64082b2a645a09462ed97 299 SUPERFAMILY SSF56529 67 282 1.57E-58 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 RAM_06230 197f99e86921f57ba1619cc8ce9ffce0 141 Gene3D G3DSA:3.10.129.10 2 131 6.7E-25 T 13-10-2018 RAM_06230 197f99e86921f57ba1619cc8ce9ffce0 141 Pfam PF13279 Thioesterase-like superfamily 13 120 3.4E-12 T 13-10-2018 RAM_06230 197f99e86921f57ba1619cc8ce9ffce0 141 SUPERFAMILY SSF54637 6 130 4.98E-25 T 13-10-2018 IPR029069 HotDog domain superfamily RAM_12085 830322306bc9d2a377ca5de0e66331bb 221 Gene3D G3DSA:1.10.10.60 1 73 1.2E-21 T 13-10-2018 RAM_12085 830322306bc9d2a377ca5de0e66331bb 221 Gene3D G3DSA:1.10.357.10 74 221 5.2E-36 T 13-10-2018 RAM_12085 830322306bc9d2a377ca5de0e66331bb 221 SUPERFAMILY SSF46689 7 72 3.54E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_12085 830322306bc9d2a377ca5de0e66331bb 221 Pfam PF02909 Tetracyclin repressor, C-terminal all-alpha domain 82 220 2.4E-6 T 13-10-2018 IPR004111 Tetracycline transcriptional regulator, TetR, C-terminal GO:0045892 RAM_12085 830322306bc9d2a377ca5de0e66331bb 221 SUPERFAMILY SSF48498 82 220 7.34E-19 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_12085 830322306bc9d2a377ca5de0e66331bb 221 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 63 3.3E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_03970 4bf7466c950620e534930cb4dffd6d86 501 Gene3D G3DSA:3.30.465.50 162 499 2.9E-95 T 13-10-2018 RAM_03970 4bf7466c950620e534930cb4dffd6d86 501 Gene3D G3DSA:3.40.462.20 268 452 2.9E-95 T 13-10-2018 RAM_03970 4bf7466c950620e534930cb4dffd6d86 501 Pfam PF08031 Berberine and berberine like 457 499 2.1E-15 T 13-10-2018 IPR012951 Berberine/berberine-like GO:0016491|GO:0050660|GO:0055114 RAM_03970 4bf7466c950620e534930cb4dffd6d86 501 SUPERFAMILY SSF56176 73 264 1.64E-50 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RAM_03970 4bf7466c950620e534930cb4dffd6d86 501 Gene3D G3DSA:3.30.43.10 75 153 8.9E-19 T 13-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 RAM_03970 4bf7466c950620e534930cb4dffd6d86 501 Pfam PF01565 FAD binding domain 102 232 8.1E-28 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RAM_26760 6616d6578ba45d5c2b2bf3250823eeaf 511 Gene3D G3DSA:3.50.50.60 3 335 3.8E-75 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_26760 6616d6578ba45d5c2b2bf3250823eeaf 511 Gene3D G3DSA:3.30.70.2450 178 263 3.8E-75 T 13-10-2018 RAM_26760 6616d6578ba45d5c2b2bf3250823eeaf 511 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 307 325 2.9E-30 T 13-10-2018 RAM_26760 6616d6578ba45d5c2b2bf3250823eeaf 511 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 274 289 2.9E-30 T 13-10-2018 RAM_26760 6616d6578ba45d5c2b2bf3250823eeaf 511 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 148 163 2.9E-30 T 13-10-2018 RAM_26760 6616d6578ba45d5c2b2bf3250823eeaf 511 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 2 24 2.9E-30 T 13-10-2018 RAM_26760 6616d6578ba45d5c2b2bf3250823eeaf 511 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 289 305 2.9E-30 T 13-10-2018 RAM_26760 6616d6578ba45d5c2b2bf3250823eeaf 511 Pfam PF01494 FAD binding domain 2 334 1.2E-46 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_26760 6616d6578ba45d5c2b2bf3250823eeaf 511 SUPERFAMILY SSF51905 2 371 3.77E-43 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_05470 f5cac620e70daf3925833c3d56bf0feb 253 Pfam PF13828 Domain of unknown function (DUF4190) 178 236 6.7E-15 T 13-10-2018 IPR025241 Domain of unknown function DUF4190 RAM_12005 30c1923fc36bab8a348d6d38f6fca1e8 283 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 59 153 2.5E-22 T 13-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 RAM_12005 30c1923fc36bab8a348d6d38f6fca1e8 283 SUPERFAMILY SSF161098 59 263 9.68E-41 T 13-10-2018 IPR035906 MetI-like superfamily RAM_12005 30c1923fc36bab8a348d6d38f6fca1e8 283 Gene3D G3DSA:1.10.3720.10 46 266 9.7E-51 T 13-10-2018 IPR035906 MetI-like superfamily RAM_12005 30c1923fc36bab8a348d6d38f6fca1e8 283 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 79 262 2.5E-24 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_10120 4fc6d6c9811635a26740e02a30622f36 289 Gene3D G3DSA:1.10.3720.10 84 281 1.1E-17 T 13-10-2018 IPR035906 MetI-like superfamily RAM_10120 4fc6d6c9811635a26740e02a30622f36 289 SUPERFAMILY SSF161098 86 269 4.32E-21 T 13-10-2018 IPR035906 MetI-like superfamily RAM_10120 4fc6d6c9811635a26740e02a30622f36 289 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 106 278 9.0E-18 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_00240 617c5befcf1ea2fd221af257421b3998 263 SMART SM00382 27 213 2.0E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_00240 617c5befcf1ea2fd221af257421b3998 263 Gene3D G3DSA:3.40.50.300 1 208 4.1E-45 T 13-10-2018 RAM_00240 617c5befcf1ea2fd221af257421b3998 263 SUPERFAMILY SSF52540 2 198 4.77E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_00240 617c5befcf1ea2fd221af257421b3998 263 ProSitePatterns PS00211 ABC transporters family signature. 119 133 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_00240 617c5befcf1ea2fd221af257421b3998 263 Pfam PF00005 ABC transporter 18 146 1.1E-20 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_19030 fc88e6f67fdf87e9f29ef19af1f70a91 194 Pfam PF03600 Citrate transporter 9 96 4.0E-13 T 13-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 RAM_19030 fc88e6f67fdf87e9f29ef19af1f70a91 194 SUPERFAMILY SSF48498 94 191 2.04E-16 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_19030 fc88e6f67fdf87e9f29ef19af1f70a91 194 Pfam PF13305 WHG domain 94 168 3.3E-17 T 13-10-2018 IPR025996 WHG domain RAM_19030 fc88e6f67fdf87e9f29ef19af1f70a91 194 Gene3D G3DSA:1.10.357.10 91 194 3.0E-17 T 13-10-2018 RAM_07155 f2ae053030ed22976f0947ae681a70c5 269 Gene3D G3DSA:3.40.630.30 2 125 6.3E-23 T 13-10-2018 RAM_07155 f2ae053030ed22976f0947ae681a70c5 269 Pfam PF13302 Acetyltransferase (GNAT) domain 11 119 2.0E-15 T 13-10-2018 IPR000182 GNAT domain RAM_07155 f2ae053030ed22976f0947ae681a70c5 269 SUPERFAMILY SSF55729 9 122 8.95E-19 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_46150 0edceb3dd1f11b17690c73f43894982c 277 PRINTS PR00412 Epoxide hydrolase signature 251 273 9.2E-21 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_46150 0edceb3dd1f11b17690c73f43894982c 277 PRINTS PR00412 Epoxide hydrolase signature 217 233 9.2E-21 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_46150 0edceb3dd1f11b17690c73f43894982c 277 PRINTS PR00412 Epoxide hydrolase signature 111 124 9.2E-21 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_46150 0edceb3dd1f11b17690c73f43894982c 277 PRINTS PR00412 Epoxide hydrolase signature 51 66 9.2E-21 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_46150 0edceb3dd1f11b17690c73f43894982c 277 PRINTS PR00412 Epoxide hydrolase signature 31 49 9.2E-21 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_46150 0edceb3dd1f11b17690c73f43894982c 277 PRINTS PR00412 Epoxide hydrolase signature 97 110 9.2E-21 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_46150 0edceb3dd1f11b17690c73f43894982c 277 Gene3D G3DSA:3.40.50.1820 9 275 3.9E-62 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_46150 0edceb3dd1f11b17690c73f43894982c 277 SUPERFAMILY SSF53474 6 275 1.31E-58 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_46150 0edceb3dd1f11b17690c73f43894982c 277 PRINTS PR00111 Alpha/beta hydrolase fold signature 51 66 2.4E-5 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_46150 0edceb3dd1f11b17690c73f43894982c 277 PRINTS PR00111 Alpha/beta hydrolase fold signature 97 110 2.4E-5 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_46150 0edceb3dd1f11b17690c73f43894982c 277 PRINTS PR00111 Alpha/beta hydrolase fold signature 111 124 2.4E-5 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_46150 0edceb3dd1f11b17690c73f43894982c 277 Pfam PF00561 alpha/beta hydrolase fold 26 151 1.9E-21 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_37085 84369747b30ad35b91bdf265204b8261 467 Pfam PF00106 short chain dehydrogenase 22 147 1.5E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_37085 84369747b30ad35b91bdf265204b8261 467 SUPERFAMILY SSF51735 22 203 3.52E-39 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_37085 84369747b30ad35b91bdf265204b8261 467 Gene3D G3DSA:3.40.50.720 4 240 2.8E-48 T 13-10-2018 RAM_37085 84369747b30ad35b91bdf265204b8261 467 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 25 42 3.9E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_37085 84369747b30ad35b91bdf265204b8261 467 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 90 106 3.9E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_37085 84369747b30ad35b91bdf265204b8261 467 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 115 134 3.9E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_37085 84369747b30ad35b91bdf265204b8261 467 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 136 153 3.9E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_37085 84369747b30ad35b91bdf265204b8261 467 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 185 3.9E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_37085 84369747b30ad35b91bdf265204b8261 467 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 43 54 2.4E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_37085 84369747b30ad35b91bdf265204b8261 467 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 115 134 2.4E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_43315 825654968764ecaaafbe080b2e6f1499 277 SMART SM00849 32 263 3.2E-10 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_43315 825654968764ecaaafbe080b2e6f1499 277 Gene3D G3DSA:3.60.15.10 1 276 1.4E-51 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_43315 825654968764ecaaafbe080b2e6f1499 277 Pfam PF00753 Metallo-beta-lactamase superfamily 33 229 1.2E-16 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_43315 825654968764ecaaafbe080b2e6f1499 277 SUPERFAMILY SSF56281 30 266 1.49E-27 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_08935 57edda857da7f9167d4c6663c8c4e0e4 72 Gene3D G3DSA:3.30.10.10 13 70 5.9E-7 T 13-10-2018 RAM_08935 57edda857da7f9167d4c6663c8c4e0e4 72 SUPERFAMILY SSF54654 16 62 5.1E-6 T 13-10-2018 IPR036354 Proteinase inhibitor I13, potato inhibitor I superfamily RAM_07055 81396f4927d2443c4888421b0ad42607 220 Pfam PF01522 Polysaccharide deacetylase 31 148 3.9E-33 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 RAM_07055 81396f4927d2443c4888421b0ad42607 220 SUPERFAMILY SSF88713 27 206 1.11E-54 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RAM_07055 81396f4927d2443c4888421b0ad42607 220 Gene3D G3DSA:3.20.20.370 27 220 4.7E-58 T 13-10-2018 RAM_27380 1483cdb99c494007870e15e2bbed0bd6 508 SUPERFAMILY SSF63829 301 504 3.05E-28 T 13-10-2018 RAM_27380 1483cdb99c494007870e15e2bbed0bd6 508 Gene3D G3DSA:2.40.10.500 214 285 5.9E-6 T 13-10-2018 RAM_27380 1483cdb99c494007870e15e2bbed0bd6 508 Gene3D G3DSA:2.130.10.10 2 213 1.2E-16 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RAM_27380 1483cdb99c494007870e15e2bbed0bd6 508 SUPERFAMILY SSF101898 124 281 3.14E-19 T 13-10-2018 RAM_27380 1483cdb99c494007870e15e2bbed0bd6 508 SUPERFAMILY SSF63829 15 115 1.63E-18 T 13-10-2018 RAM_27380 1483cdb99c494007870e15e2bbed0bd6 508 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 307 456 6.3E-7 T 13-10-2018 IPR013658 SMP-30/Gluconolactonase/LRE-like region RAM_27380 1483cdb99c494007870e15e2bbed0bd6 508 Gene3D G3DSA:2.120.10.30 286 497 5.5E-20 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RAM_24270 02c401e738c6b1245eee8459c25c1cd5 75 SMART SM00923 2 52 8.7E-21 T 13-10-2018 IPR005153 MbtH-like domain RAM_24270 02c401e738c6b1245eee8459c25c1cd5 75 Pfam PF03621 MbtH-like protein 5 52 3.4E-21 T 13-10-2018 IPR005153 MbtH-like domain RAM_24270 02c401e738c6b1245eee8459c25c1cd5 75 SUPERFAMILY SSF160582 5 68 7.72E-27 T 13-10-2018 IPR038020 MbtH-like domain superfamily RAM_24270 02c401e738c6b1245eee8459c25c1cd5 75 Gene3D G3DSA:3.90.820.10 2 71 2.1E-29 T 13-10-2018 RAM_38345 9867c896d59e5965f3f9d43e295247ae 246 Gene3D G3DSA:3.40.50.1110 26 235 1.3E-70 T 13-10-2018 IPR036514 SGNH hydrolase superfamily RAM_38345 9867c896d59e5965f3f9d43e295247ae 246 SUPERFAMILY SSF52266 24 221 2.96E-34 T 13-10-2018 RAM_38345 9867c896d59e5965f3f9d43e295247ae 246 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 35 211 6.3E-21 T 13-10-2018 IPR013830 SGNH hydrolase-type esterase domain RAM_01910 17365ad2e6c88c343bcb7a1c6c59c15c 115 SMART SM00345 14 73 9.2E-16 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_01910 17365ad2e6c88c343bcb7a1c6c59c15c 115 SUPERFAMILY SSF46785 5 77 1.5E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_01910 17365ad2e6c88c343bcb7a1c6c59c15c 115 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 73 3.1E-17 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_01910 17365ad2e6c88c343bcb7a1c6c59c15c 115 Gene3D G3DSA:1.10.10.10 8 114 6.9E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_40765 b33d56c2bf24bf3074248729355b976b 127 Gene3D G3DSA:3.10.180.10 4 126 2.1E-30 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_40765 b33d56c2bf24bf3074248729355b976b 127 SUPERFAMILY SSF54593 1 126 2.55E-25 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_40765 b33d56c2bf24bf3074248729355b976b 127 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 122 2.3E-10 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RAM_00035 4252632d0f6e3882b71a23798b40f8de 845 Gene3D G3DSA:3.30.1360.40 246 343 1.2E-199 T 13-10-2018 RAM_00035 4252632d0f6e3882b71a23798b40f8de 845 Gene3D G3DSA:3.90.199.10 38 497 1.2E-199 T 13-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 RAM_00035 4252632d0f6e3882b71a23798b40f8de 845 SUPERFAMILY SSF56719 36 498 1.57E-170 T 13-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 RAM_00035 4252632d0f6e3882b71a23798b40f8de 845 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 621 663 3.8E-10 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RAM_00035 4252632d0f6e3882b71a23798b40f8de 845 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 668 717 1.8E-10 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RAM_00035 4252632d0f6e3882b71a23798b40f8de 845 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 721 768 1.0E-10 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RAM_00035 4252632d0f6e3882b71a23798b40f8de 845 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 564 608 2.8E-11 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RAM_00035 4252632d0f6e3882b71a23798b40f8de 845 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 514 561 3.7E-12 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RAM_00035 4252632d0f6e3882b71a23798b40f8de 845 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 771 812 1.1E-9 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RAM_00035 4252632d0f6e3882b71a23798b40f8de 845 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 14 817 0.0 T 13-10-2018 RAM_00035 4252632d0f6e3882b71a23798b40f8de 845 SUPERFAMILY SSF101904 509 823 5.49E-101 T 13-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal RAM_00035 4252632d0f6e3882b71a23798b40f8de 845 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 38 482 1.6E-148 T 13-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RAM_00035 4252632d0f6e3882b71a23798b40f8de 845 SMART SM00434 17 475 1.3E-271 T 13-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RAM_00035 4252632d0f6e3882b71a23798b40f8de 845 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 3 819 23.722 T 13-10-2018 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RAM_00035 4252632d0f6e3882b71a23798b40f8de 845 Gene3D G3DSA:1.10.268.10 380 468 1.2E-199 T 13-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 RAM_00035 4252632d0f6e3882b71a23798b40f8de 845 Gene3D G3DSA:2.120.10.90 511 819 4.1E-126 T 13-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal RAM_42235 6bed2f81894e3b2611b1a82e7cf22756 372 Gene3D G3DSA:3.30.565.10 242 370 3.2E-28 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_42235 6bed2f81894e3b2611b1a82e7cf22756 372 Pfam PF07730 Histidine kinase 174 238 1.1E-17 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_42235 6bed2f81894e3b2611b1a82e7cf22756 372 SUPERFAMILY SSF55874 248 368 1.9E-15 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_42235 6bed2f81894e3b2611b1a82e7cf22756 372 SMART SM00387 277 372 2.9E-4 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_21340 1dc7d85d10003f14726c9b50d63fa6b7 316 PRINTS PR00990 Ribokinase signature 179 194 2.2E-11 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 RAM_21340 1dc7d85d10003f14726c9b50d63fa6b7 316 PRINTS PR00990 Ribokinase signature 11 32 2.2E-11 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 RAM_21340 1dc7d85d10003f14726c9b50d63fa6b7 316 PRINTS PR00990 Ribokinase signature 38 57 2.2E-11 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 RAM_21340 1dc7d85d10003f14726c9b50d63fa6b7 316 PRINTS PR00990 Ribokinase signature 223 234 2.2E-11 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 RAM_21340 1dc7d85d10003f14726c9b50d63fa6b7 316 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 43 67 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RAM_21340 1dc7d85d10003f14726c9b50d63fa6b7 316 SUPERFAMILY SSF53613 8 303 3.43E-57 T 13-10-2018 IPR029056 Ribokinase-like RAM_21340 1dc7d85d10003f14726c9b50d63fa6b7 316 Gene3D G3DSA:3.40.1190.20 6 307 7.4E-64 T 13-10-2018 IPR029056 Ribokinase-like RAM_21340 1dc7d85d10003f14726c9b50d63fa6b7 316 Pfam PF00294 pfkB family carbohydrate kinase 8 295 9.8E-48 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB RAM_36305 2bbc06b53459fce8a480f32c8cae235a 382 SUPERFAMILY SSF53098 55 377 1.9E-20 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily RAM_36305 2bbc06b53459fce8a480f32c8cae235a 382 Pfam PF13546 DDE superfamily endonuclease 20 234 5.3E-51 T 13-10-2018 IPR038721 Transposase IS701-like, DDE domain RAM_08170 b5b2eb6d4d5550e88f6edd97c72384c5 329 Gene3D G3DSA:3.20.20.30 15 328 7.8E-73 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_08170 b5b2eb6d4d5550e88f6edd97c72384c5 329 TIGRFAM TIGR03560 F420_Rv1855c: probable F420-dependent oxidoreductase, Rv1855c family 17 234 6.8E-82 T 13-10-2018 IPR019952 F420-dependent oxidoreductase-predicted, Rv1855c RAM_08170 b5b2eb6d4d5550e88f6edd97c72384c5 329 SUPERFAMILY SSF51679 1 327 5.36E-79 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_08170 b5b2eb6d4d5550e88f6edd97c72384c5 329 Pfam PF00296 Luciferase-like monooxygenase 1 298 1.4E-54 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_26855 0577a4ecfa9b93eae418ad0db5ce360e 220 Pfam PF00440 Bacterial regulatory proteins, tetR family 25 64 7.2E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_26855 0577a4ecfa9b93eae418ad0db5ce360e 220 SUPERFAMILY SSF46689 12 85 6.98E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_26855 0577a4ecfa9b93eae418ad0db5ce360e 220 Gene3D G3DSA:1.10.357.10 8 205 5.3E-45 T 13-10-2018 RAM_46870 f355dd46166ce3aad4ccbe4e69b09e39 338 Gene3D G3DSA:3.40.50.2300 144 279 4.1E-67 T 13-10-2018 RAM_46870 f355dd46166ce3aad4ccbe4e69b09e39 338 Pfam PF13407 Periplasmic binding protein domain 41 300 8.1E-54 T 13-10-2018 IPR025997 Periplasmic binding protein RAM_46870 f355dd46166ce3aad4ccbe4e69b09e39 338 SUPERFAMILY SSF53822 39 311 9.6E-61 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_46870 f355dd46166ce3aad4ccbe4e69b09e39 338 Gene3D G3DSA:3.40.50.2300 42 297 4.1E-67 T 13-10-2018 RAM_14905 90097eefaca73ec1d8d1e24a38320e33 212 Pfam PF00072 Response regulator receiver domain 1 114 1.1E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_14905 90097eefaca73ec1d8d1e24a38320e33 212 Gene3D G3DSA:3.40.50.12740 1 211 1.9E-63 T 13-10-2018 RAM_14905 90097eefaca73ec1d8d1e24a38320e33 212 SMART SM00448 1 114 1.1E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_14905 90097eefaca73ec1d8d1e24a38320e33 212 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 205 4.1E-16 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_14905 90097eefaca73ec1d8d1e24a38320e33 212 SUPERFAMILY SSF52172 1 131 4.55E-30 T 13-10-2018 IPR011006 CheY-like superfamily RAM_14905 90097eefaca73ec1d8d1e24a38320e33 212 SUPERFAMILY SSF46894 138 211 8.5E-20 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_14905 90097eefaca73ec1d8d1e24a38320e33 212 SMART SM00421 148 205 3.7E-18 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_14905 90097eefaca73ec1d8d1e24a38320e33 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 165 181 9.0E-10 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_14905 90097eefaca73ec1d8d1e24a38320e33 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 181 193 9.0E-10 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_14905 90097eefaca73ec1d8d1e24a38320e33 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 151 165 9.0E-10 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_05445 670bbc02be0dbaff780252e743eb24f3 384 SUPERFAMILY SSF117916 12 102 6.21E-23 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily RAM_05445 670bbc02be0dbaff780252e743eb24f3 384 Gene3D G3DSA:3.40.50.300 114 364 2.8E-68 T 13-10-2018 RAM_05445 670bbc02be0dbaff780252e743eb24f3 384 Hamap MF_02040 Iron-sulfur cluster carrier protein. 100 366 33.05 T 13-10-2018 IPR019591 Mrp/NBP35 ATP-binding protein RAM_05445 670bbc02be0dbaff780252e743eb24f3 384 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 120 365 7.1E-87 T 13-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 RAM_05445 670bbc02be0dbaff780252e743eb24f3 384 SUPERFAMILY SSF52540 119 365 2.74E-50 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_05445 670bbc02be0dbaff780252e743eb24f3 384 Gene3D G3DSA:3.30.300.130 8 104 4.3E-21 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily RAM_05445 670bbc02be0dbaff780252e743eb24f3 384 Pfam PF01883 Iron-sulfur cluster assembly protein 14 86 1.1E-17 T 13-10-2018 IPR002744 MIP18 family-like RAM_42375 e80ece4c23f04fdee171ed5a29012289 598 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 9 526 1.1E-144 T 13-10-2018 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 RAM_42375 e80ece4c23f04fdee171ed5a29012289 598 Pfam PF09334 tRNA synthetases class I (M) 6 411 1.6E-142 T 13-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 RAM_42375 e80ece4c23f04fdee171ed5a29012289 598 PRINTS PR01041 Methionyl-tRNA synthetase signature 253 264 1.1E-24 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 RAM_42375 e80ece4c23f04fdee171ed5a29012289 598 PRINTS PR01041 Methionyl-tRNA synthetase signature 399 410 1.1E-24 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 RAM_42375 e80ece4c23f04fdee171ed5a29012289 598 PRINTS PR01041 Methionyl-tRNA synthetase signature 293 308 1.1E-24 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 RAM_42375 e80ece4c23f04fdee171ed5a29012289 598 PRINTS PR01041 Methionyl-tRNA synthetase signature 40 54 1.1E-24 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 RAM_42375 e80ece4c23f04fdee171ed5a29012289 598 PRINTS PR01041 Methionyl-tRNA synthetase signature 7 20 1.1E-24 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 RAM_42375 e80ece4c23f04fdee171ed5a29012289 598 PRINTS PR01041 Methionyl-tRNA synthetase signature 88 99 1.1E-24 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 RAM_42375 e80ece4c23f04fdee171ed5a29012289 598 SUPERFAMILY SSF47323 400 581 2.43E-32 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 RAM_42375 e80ece4c23f04fdee171ed5a29012289 598 Gene3D G3DSA:3.40.50.620 6 394 1.6E-143 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAM_42375 e80ece4c23f04fdee171ed5a29012289 598 SUPERFAMILY SSF52374 6 399 2.39E-87 T 13-10-2018 RAM_42375 e80ece4c23f04fdee171ed5a29012289 598 Gene3D G3DSA:2.20.28.20 140 174 1.6E-143 T 13-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 RAM_42375 e80ece4c23f04fdee171ed5a29012289 598 Hamap MF_00098 Methionine--tRNA ligase [metG]. 3 592 37.385 T 13-10-2018 IPR023458 Methionine-tRNA ligase, type 1 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 RAM_42375 e80ece4c23f04fdee171ed5a29012289 598 SUPERFAMILY SSF57770 140 174 1.44E-11 T 13-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 RAM_42375 e80ece4c23f04fdee171ed5a29012289 598 Gene3D G3DSA:1.10.730.10 395 588 1.3E-35 T 13-10-2018 RAM_09445 399ce8c2b55e8b05624b1f046682875e 184 TIGRFAM TIGR02423 protocat_alph: protocatechuate 3,4-dioxygenase, alpha subunit 7 184 3.0E-63 T 13-10-2018 IPR012786 Protocatechuate 3,4-dioxygenase, alpha subunit GO:0005506|GO:0018578|GO:0019439|GO:0055114 KEGG: 00362+1.13.11.3|KEGG: 00624+1.13.11.3|MetaCyc: PWY-6041 RAM_09445 399ce8c2b55e8b05624b1f046682875e 184 Pfam PF00775 Dioxygenase 37 174 4.6E-16 T 13-10-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 RAM_09445 399ce8c2b55e8b05624b1f046682875e 184 Gene3D G3DSA:2.60.130.10 1 184 6.7E-61 T 13-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 RAM_09445 399ce8c2b55e8b05624b1f046682875e 184 SUPERFAMILY SSF49482 2 183 1.15E-48 T 13-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 RAM_29495 bfbd43993561e9c9f279a6974587bdc1 875 Pfam PF05592 Bacterial alpha-L-rhamnosidase concanavalin-like domain 332 429 5.2E-27 T 13-10-2018 IPR008902 Alpha-L-rhamnosidase, concanavalin-like domain RAM_29495 bfbd43993561e9c9f279a6974587bdc1 875 Gene3D G3DSA:1.50.10.10 114 874 2.8E-281 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 RAM_29495 bfbd43993561e9c9f279a6974587bdc1 875 Pfam PF17389 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain 435 770 8.6E-122 T 13-10-2018 IPR035396 Alpha-L-rhamnosidase, six-hairpin glycosidase domain RAM_29495 bfbd43993561e9c9f279a6974587bdc1 875 Pfam PF08531 Alpha-L-rhamnosidase N-terminal domain 162 321 9.1E-47 T 13-10-2018 IPR013737 Bacterial alpha-L-rhamnosidase N-terminal RAM_29495 bfbd43993561e9c9f279a6974587bdc1 875 Pfam PF17390 Bacterial alpha-L-rhamnosidase C-terminal domain 773 851 3.0E-13 T 13-10-2018 IPR035398 Alpha-L-rhamnosidase C-terminal domain RAM_29495 bfbd43993561e9c9f279a6974587bdc1 875 PIRSF PIRSF010631 1 872 2.5E-277 T 13-10-2018 IPR016007 Alpha-L-rhamnosidase RAM_29495 bfbd43993561e9c9f279a6974587bdc1 875 SUPERFAMILY SSF48208 435 841 7.06E-46 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_29495 bfbd43993561e9c9f279a6974587bdc1 875 Gene3D G3DSA:2.60.40.10 3 113 1.1E-29 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_06315 aeb5100d540727328976bb5c1926881a 368 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 264 355 7.2E-12 T 13-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 RAM_06315 aeb5100d540727328976bb5c1926881a 368 SUPERFAMILY SSF54211 253 356 3.49E-21 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RAM_06315 aeb5100d540727328976bb5c1926881a 368 Gene3D G3DSA:2.30.42.10 138 231 5.7E-11 T 13-10-2018 RAM_06315 aeb5100d540727328976bb5c1926881a 368 SUPERFAMILY SSF50156 163 265 7.06E-16 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 RAM_06315 aeb5100d540727328976bb5c1926881a 368 Pfam PF13180 PDZ domain 164 223 1.6E-8 T 13-10-2018 IPR001478 PDZ domain GO:0005515 RAM_06315 aeb5100d540727328976bb5c1926881a 368 SMART SM00228 156 220 2.2E-4 T 13-10-2018 IPR001478 PDZ domain GO:0005515 RAM_06315 aeb5100d540727328976bb5c1926881a 368 Gene3D G3DSA:3.30.230.10 232 363 1.0E-24 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RAM_18465 1a319bc337022c20e8a0c4f63b6383f2 312 Gene3D G3DSA:3.40.47.10 1 177 2.3E-16 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_18465 1a319bc337022c20e8a0c4f63b6383f2 312 SUPERFAMILY SSF53901 12 311 9.52E-24 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_18465 1a319bc337022c20e8a0c4f63b6383f2 312 Gene3D G3DSA:3.40.47.10 178 311 1.6E-28 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_18465 1a319bc337022c20e8a0c4f63b6383f2 312 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 222 312 2.2E-16 T 13-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 RAM_10930 7b622f40f6e9a1441aa238933268ecb7 386 Gene3D G3DSA:3.40.640.10 30 287 1.1E-107 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_10930 7b622f40f6e9a1441aa238933268ecb7 386 SUPERFAMILY SSF53383 3 386 1.83E-83 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_10930 7b622f40f6e9a1441aa238933268ecb7 386 Gene3D G3DSA:3.90.1150.10 15 382 1.1E-107 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_10930 7b622f40f6e9a1441aa238933268ecb7 386 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 204 224 - T 13-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site RAM_10930 7b622f40f6e9a1441aa238933268ecb7 386 Pfam PF00266 Aminotransferase class-V 20 382 3.7E-61 T 13-10-2018 IPR000192 Aminotransferase class V domain RAM_20130 f1f0680430a1dbf1d8e499a514aa0be9 302 Gene3D G3DSA:3.40.50.720 1 301 4.6E-83 T 13-10-2018 RAM_20130 f1f0680430a1dbf1d8e499a514aa0be9 302 Pfam PF00106 short chain dehydrogenase 17 216 1.8E-27 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_20130 f1f0680430a1dbf1d8e499a514aa0be9 302 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 2.5E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_20130 f1f0680430a1dbf1d8e499a514aa0be9 302 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 17 34 2.5E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_20130 f1f0680430a1dbf1d8e499a514aa0be9 302 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 90 101 2.5E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_20130 f1f0680430a1dbf1d8e499a514aa0be9 302 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 193 2.5E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_20130 f1f0680430a1dbf1d8e499a514aa0be9 302 SUPERFAMILY SSF51735 11 296 2.91E-53 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_23925 ea5a43671ee413379e8aecb060c328f9 111 SUPERFAMILY SSF54909 1 109 5.09E-30 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_23925 ea5a43671ee413379e8aecb060c328f9 111 Pfam PF03795 YCII-related domain 1 104 1.3E-18 T 13-10-2018 IPR005545 YCII-related RAM_23925 ea5a43671ee413379e8aecb060c328f9 111 Gene3D G3DSA:3.30.70.1060 1 107 2.3E-38 T 13-10-2018 RAM_31875 c30b1bbdda65046d3bfb04b73a2bde01 264 SMART SM00530 7 62 2.9E-10 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_31875 c30b1bbdda65046d3bfb04b73a2bde01 264 SUPERFAMILY SSF47413 4 61 9.38E-13 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_31875 c30b1bbdda65046d3bfb04b73a2bde01 264 Pfam PF13560 Helix-turn-helix domain 4 65 3.5E-11 T 13-10-2018 RAM_31875 c30b1bbdda65046d3bfb04b73a2bde01 264 Gene3D G3DSA:1.10.260.40 3 64 5.6E-11 T 13-10-2018 RAM_00740 17d16bfff7612b44cdfdbe40bd0ce309 170 Gene3D G3DSA:1.10.10.10 76 160 7.6E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_00740 17d16bfff7612b44cdfdbe40bd0ce309 170 Pfam PF04542 Sigma-70 region 2 11 79 3.1E-7 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_00740 17d16bfff7612b44cdfdbe40bd0ce309 170 SUPERFAMILY SSF88946 8 96 2.67E-10 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_00740 17d16bfff7612b44cdfdbe40bd0ce309 170 Pfam PF08281 Sigma-70, region 4 102 152 1.3E-17 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_00740 17d16bfff7612b44cdfdbe40bd0ce309 170 Gene3D G3DSA:1.10.1740.10 4 62 1.6E-7 T 13-10-2018 RAM_00740 17d16bfff7612b44cdfdbe40bd0ce309 170 TIGRFAM TIGR02983 SigE-fam_strep: RNA polymerase sigma-70 factor, sigma-E family 7 159 5.3E-48 T 13-10-2018 IPR014325 RNA polymerase sigma-E factor, actinobacteria GO:0016987 RAM_00740 17d16bfff7612b44cdfdbe40bd0ce309 170 SUPERFAMILY SSF88659 92 159 7.1E-17 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_00740 17d16bfff7612b44cdfdbe40bd0ce309 170 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 9 156 6.3E-21 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_04655 1a52d72c1b787c59b5f8e854e60067b5 602 Gene3D G3DSA:3.40.50.280 477 602 2.5E-39 T 13-10-2018 RAM_04655 1a52d72c1b787c59b5f8e854e60067b5 602 Pfam PF01642 Methylmalonyl-CoA mutase 49 520 1.5E-128 T 13-10-2018 IPR006099 Methylmalonyl-CoA mutase, alpha/beta chain, catalytic GO:0016866|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 RAM_04655 1a52d72c1b787c59b5f8e854e60067b5 602 Gene3D G3DSA:3.20.20.240 47 473 2.8E-164 T 13-10-2018 RAM_04655 1a52d72c1b787c59b5f8e854e60067b5 602 SUPERFAMILY SSF51703 7 526 2.0E-153 T 13-10-2018 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 RAM_12270 a8202ce646c04b5538acbaa95b599ea0 284 SUPERFAMILY SSF51261 66 148 3.56E-29 T 13-10-2018 IPR011055 Duplicated hybrid motif RAM_12270 a8202ce646c04b5538acbaa95b599ea0 284 Gene3D G3DSA:2.70.70.10 30 176 3.1E-31 T 13-10-2018 IPR011055 Duplicated hybrid motif RAM_12270 a8202ce646c04b5538acbaa95b599ea0 284 Pfam PF01551 Peptidase family M23 58 148 1.2E-23 T 13-10-2018 IPR016047 Peptidase M23 RAM_04965 36115f16c782106c5a8d7a8fa9b2374d 308 Pfam PF00682 HMGL-like 22 289 3.6E-44 T 13-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 RAM_04965 36115f16c782106c5a8d7a8fa9b2374d 308 SUPERFAMILY SSF51569 18 303 1.81E-66 T 13-10-2018 RAM_04965 36115f16c782106c5a8d7a8fa9b2374d 308 Gene3D G3DSA:3.20.20.70 16 308 3.1E-122 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_24380 cf75be025c47a39840c41b2ee1eb6960 279 Gene3D G3DSA:1.10.3720.10 32 273 2.7E-33 T 13-10-2018 IPR035906 MetI-like superfamily RAM_24380 cf75be025c47a39840c41b2ee1eb6960 279 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 104 264 1.0E-6 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_24380 cf75be025c47a39840c41b2ee1eb6960 279 SUPERFAMILY SSF161098 36 264 5.76E-31 T 13-10-2018 IPR035906 MetI-like superfamily RAM_40505 ff7a4a359d7c33bd62f96d1b31adec32 161 Gene3D G3DSA:3.30.450.30 36 160 9.0E-21 T 13-10-2018 RAM_40505 ff7a4a359d7c33bd62f96d1b31adec32 161 Pfam PF03259 Roadblock/LC7 domain 55 132 2.8E-9 T 13-10-2018 IPR004942 Roadblock/LAMTOR2 domain RAM_40505 ff7a4a359d7c33bd62f96d1b31adec32 161 SMART SM00960 46 132 2.0E-11 T 13-10-2018 IPR004942 Roadblock/LAMTOR2 domain RAM_40505 ff7a4a359d7c33bd62f96d1b31adec32 161 SUPERFAMILY SSF103196 46 158 3.31E-16 T 13-10-2018 RAM_16320 4cbefd25088eaf9c2cc78cfd0c999b31 205 SUPERFAMILY SSF53335 8 163 9.43E-30 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_16320 4cbefd25088eaf9c2cc78cfd0c999b31 205 Gene3D G3DSA:3.40.50.150 6 192 2.5E-34 T 13-10-2018 RAM_16320 4cbefd25088eaf9c2cc78cfd0c999b31 205 Pfam PF13649 Methyltransferase domain 44 137 1.7E-13 T 13-10-2018 RAM_22255 6f2db7d913407cc7966e607fa2928dc1 410 Pfam PF07690 Major Facilitator Superfamily 21 256 7.4E-22 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_22255 6f2db7d913407cc7966e607fa2928dc1 410 Gene3D G3DSA:1.20.1250.20 11 396 2.5E-42 T 13-10-2018 RAM_22255 6f2db7d913407cc7966e607fa2928dc1 410 SUPERFAMILY SSF103473 17 396 1.57E-50 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_38240 eb95e2bee68c25505868a84303b323d2 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 3.6E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_38240 eb95e2bee68c25505868a84303b323d2 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 3.6E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_38240 eb95e2bee68c25505868a84303b323d2 190 SUPERFAMILY SSF48498 84 186 1.53E-10 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_38240 eb95e2bee68c25505868a84303b323d2 190 Gene3D G3DSA:1.10.357.10 2 187 5.8E-48 T 13-10-2018 RAM_38240 eb95e2bee68c25505868a84303b323d2 190 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 63 2.8E-13 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_38240 eb95e2bee68c25505868a84303b323d2 190 SUPERFAMILY SSF46689 5 87 5.49E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_23505 325d7e4e7a94e536e243dac011eea89a 250 Pfam PF13460 NAD(P)H-binding 10 132 3.5E-13 T 13-10-2018 IPR016040 NAD(P)-binding domain RAM_23505 325d7e4e7a94e536e243dac011eea89a 250 SUPERFAMILY SSF51735 5 222 2.47E-38 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_23505 325d7e4e7a94e536e243dac011eea89a 250 Gene3D G3DSA:3.40.50.720 5 249 9.9E-43 T 13-10-2018 RAM_43705 db171b760babcf84cb06924557e9d186 159 SUPERFAMILY SSF46785 23 147 1.42E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_43705 db171b760babcf84cb06924557e9d186 159 Gene3D G3DSA:1.10.10.10 8 152 3.7E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_43705 db171b760babcf84cb06924557e9d186 159 SMART SM00347 33 134 8.2E-15 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_43705 db171b760babcf84cb06924557e9d186 159 Pfam PF01047 MarR family 55 99 9.9E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_24810 e551849ae08cbbdf2f43c5ab0e0b230a 314 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 194 278 2.2E-18 T 13-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 RAM_24810 e551849ae08cbbdf2f43c5ab0e0b230a 314 Gene3D G3DSA:3.40.50.1010 6 298 2.7E-62 T 13-10-2018 RAM_24810 e551849ae08cbbdf2f43c5ab0e0b230a 314 SUPERFAMILY SSF88723 4 154 8.34E-37 T 13-10-2018 IPR029060 PIN-like domain superfamily RAM_24810 e551849ae08cbbdf2f43c5ab0e0b230a 314 SUPERFAMILY SSF47807 194 306 1.64E-19 T 13-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily RAM_24810 e551849ae08cbbdf2f43c5ab0e0b230a 314 SMART SM00475 3 283 3.1E-74 T 13-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 RAM_24810 e551849ae08cbbdf2f43c5ab0e0b230a 314 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 5 183 7.8E-46 T 13-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 RAM_24810 e551849ae08cbbdf2f43c5ab0e0b230a 314 Gene3D G3DSA:1.10.150.20 188 268 2.7E-62 T 13-10-2018 RAM_24810 e551849ae08cbbdf2f43c5ab0e0b230a 314 SMART SM00279 191 226 4.3E-9 T 13-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 RAM_13760 f2856555449e5e5efeb788d385d815cc 402 SUPERFAMILY SSF48264 8 401 2.1E-92 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_13760 f2856555449e5e5efeb788d385d815cc 402 Gene3D G3DSA:1.10.630.10 2 402 3.5E-121 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_13760 f2856555449e5e5efeb788d385d815cc 402 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 344 353 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RAM_13760 f2856555449e5e5efeb788d385d815cc 402 PRINTS PR00359 B-class P450 signature 82 93 4.7E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_13760 f2856555449e5e5efeb788d385d815cc 402 PRINTS PR00359 B-class P450 signature 128 144 4.7E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_13760 f2856555449e5e5efeb788d385d815cc 402 PRINTS PR00359 B-class P450 signature 195 217 4.7E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_13760 f2856555449e5e5efeb788d385d815cc 402 PRINTS PR00359 B-class P450 signature 293 320 4.7E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_13760 f2856555449e5e5efeb788d385d815cc 402 PRINTS PR00359 B-class P450 signature 321 336 4.7E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_13760 f2856555449e5e5efeb788d385d815cc 402 PRINTS PR00359 B-class P450 signature 342 351 4.7E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_13760 f2856555449e5e5efeb788d385d815cc 402 PRINTS PR00359 B-class P450 signature 145 160 4.7E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_13760 f2856555449e5e5efeb788d385d815cc 402 PRINTS PR00359 B-class P450 signature 276 287 4.7E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_13760 f2856555449e5e5efeb788d385d815cc 402 PRINTS PR00359 B-class P450 signature 351 362 4.7E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_13760 f2856555449e5e5efeb788d385d815cc 402 Pfam PF00067 Cytochrome P450 37 395 7.7E-26 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_24375 7b093ec5018e86551aa1861ddaccf746 290 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 89 283 1.3E-19 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_24375 7b093ec5018e86551aa1861ddaccf746 290 SUPERFAMILY SSF161098 4 289 1.3E-51 T 13-10-2018 IPR035906 MetI-like superfamily RAM_24375 7b093ec5018e86551aa1861ddaccf746 290 Gene3D G3DSA:1.10.3720.10 2 281 2.2E-51 T 13-10-2018 IPR035906 MetI-like superfamily RAM_07585 e68020179d503840c0e2493e948730bf 514 Gene3D G3DSA:3.40.50.12780 5 410 6.3E-102 T 13-10-2018 RAM_07585 e68020179d503840c0e2493e948730bf 514 SUPERFAMILY SSF56801 9 508 2.35E-141 T 13-10-2018 RAM_07585 e68020179d503840c0e2493e948730bf 514 Pfam PF00501 AMP-binding enzyme 17 415 1.9E-88 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_07585 e68020179d503840c0e2493e948730bf 514 ProSitePatterns PS00455 Putative AMP-binding domain signature. 167 178 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_07585 e68020179d503840c0e2493e948730bf 514 Gene3D G3DSA:3.30.300.310 411 510 5.4E-33 T 13-10-2018 RAM_07585 e68020179d503840c0e2493e948730bf 514 Pfam PF13193 AMP-binding enzyme C-terminal domain 424 496 2.2E-18 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_08705 0f7b8d50fe3e5d389c41392369524142 583 SUPERFAMILY SSF52540 129 535 3.66E-11 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_08705 0f7b8d50fe3e5d389c41392369524142 583 Gene3D G3DSA:3.40.50.300 317 544 5.2E-13 T 13-10-2018 RAM_17195 9b01e44da4c682a33806a2ba1ae7dc9c 351 Pfam PF03060 Nitronate monooxygenase 79 333 1.1E-66 T 13-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 RAM_17195 9b01e44da4c682a33806a2ba1ae7dc9c 351 Pfam PF03060 Nitronate monooxygenase 2 78 1.3E-24 T 13-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 RAM_17195 9b01e44da4c682a33806a2ba1ae7dc9c 351 SUPERFAMILY SSF51412 2 258 5.95E-58 T 13-10-2018 RAM_17195 9b01e44da4c682a33806a2ba1ae7dc9c 351 Gene3D G3DSA:3.20.20.70 1 349 1.9E-92 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_29385 48c54d75ba4aaaf723fbc743d7dd50ea 408 Pfam PF00999 Sodium/hydrogen exchanger family 9 378 1.0E-41 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 RAM_29385 48c54d75ba4aaaf723fbc743d7dd50ea 408 Gene3D G3DSA:1.20.1530.20 1 377 2.0E-20 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily RAM_18290 078885badc2cd537d55f12ae5862f16d 197 SUPERFAMILY SSF46689 18 77 9.75E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_18290 078885badc2cd537d55f12ae5862f16d 197 Gene3D G3DSA:1.10.357.10 66 197 1.3E-15 T 13-10-2018 RAM_18290 078885badc2cd537d55f12ae5862f16d 197 Pfam PF16859 Bacterial transcriptional repressor C-terminal 85 189 8.8E-9 T 13-10-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RAM_18290 078885badc2cd537d55f12ae5862f16d 197 Gene3D G3DSA:1.10.10.60 13 65 1.9E-18 T 13-10-2018 RAM_18290 078885badc2cd537d55f12ae5862f16d 197 SUPERFAMILY SSF48498 89 195 5.11E-6 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_18290 078885badc2cd537d55f12ae5862f16d 197 Pfam PF00440 Bacterial regulatory proteins, tetR family 27 72 9.5E-12 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_18290 078885badc2cd537d55f12ae5862f16d 197 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 48 71 3.5E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_18290 078885badc2cd537d55f12ae5862f16d 197 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 27 40 3.5E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_34430 1e7ed65f63736e08f47a5989dd482267 1093 Gene3D G3DSA:3.60.21.10 756 1007 2.9E-24 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like RAM_34430 1e7ed65f63736e08f47a5989dd482267 1093 SUPERFAMILY SSF56300 758 995 9.12E-29 T 13-10-2018 RAM_34430 1e7ed65f63736e08f47a5989dd482267 1093 Pfam PF00149 Calcineurin-like phosphoesterase 760 917 3.8E-11 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 RAM_34430 1e7ed65f63736e08f47a5989dd482267 1093 Pfam PF09992 Phosphodiester glycosidase 226 396 3.9E-32 T 13-10-2018 IPR018711 Phosphodiester glycosidase RAM_28195 1a90c1a764ffa8bf0bca9708d397a48e 179 SUPERFAMILY SSF50370 45 178 1.34E-35 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_28195 1a90c1a764ffa8bf0bca9708d397a48e 179 SMART SM00458 44 177 2.1E-4 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_28195 1a90c1a764ffa8bf0bca9708d397a48e 179 Gene3D G3DSA:2.80.10.50 30 76 1.6E-5 T 13-10-2018 RAM_28195 1a90c1a764ffa8bf0bca9708d397a48e 179 Gene3D G3DSA:2.80.10.50 128 179 6.2E-16 T 13-10-2018 RAM_28195 1a90c1a764ffa8bf0bca9708d397a48e 179 Gene3D G3DSA:2.80.10.50 77 127 4.5E-9 T 13-10-2018 RAM_28195 1a90c1a764ffa8bf0bca9708d397a48e 179 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 41 76 6.2E-6 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_28195 1a90c1a764ffa8bf0bca9708d397a48e 179 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 79 164 3.5E-19 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_42570 301233544a26c14e316e4ce7d0dc5861 324 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 31 323 3.7E-17 T 13-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 RAM_42570 301233544a26c14e316e4ce7d0dc5861 324 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 222 238 - T 13-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site RAM_42570 301233544a26c14e316e4ce7d0dc5861 324 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 193 215 - T 13-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site RAM_42570 301233544a26c14e316e4ce7d0dc5861 324 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 114 296 9.7E-52 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 RAM_42570 301233544a26c14e316e4ce7d0dc5861 324 Gene3D G3DSA:3.40.50.720 9 317 1.6E-97 T 13-10-2018 RAM_42570 301233544a26c14e316e4ce7d0dc5861 324 SUPERFAMILY SSF52283 9 139 3.83E-28 T 13-10-2018 RAM_42570 301233544a26c14e316e4ce7d0dc5861 324 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 151 178 - T 13-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 RAM_42570 301233544a26c14e316e4ce7d0dc5861 324 Gene3D G3DSA:3.40.50.720 106 296 1.6E-97 T 13-10-2018 RAM_42570 301233544a26c14e316e4ce7d0dc5861 324 SUPERFAMILY SSF51735 106 298 4.73E-54 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_36665 ae647e243be5fddeae9fff4cc2bbcc06 532 SUPERFAMILY SSF51905 7 241 1.94E-49 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_36665 ae647e243be5fddeae9fff4cc2bbcc06 532 Gene3D G3DSA:3.50.50.60 4 295 1.1E-61 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_36665 ae647e243be5fddeae9fff4cc2bbcc06 532 SUPERFAMILY SSF51905 307 530 1.94E-13 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_36665 ae647e243be5fddeae9fff4cc2bbcc06 532 Pfam PF13738 Pyridine nucleotide-disulphide oxidoreductase 13 215 6.3E-11 T 13-10-2018 RAM_36665 ae647e243be5fddeae9fff4cc2bbcc06 532 Gene3D G3DSA:3.50.50.60 340 532 1.5E-41 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_36665 ae647e243be5fddeae9fff4cc2bbcc06 532 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 11 33 3.5E-5 T 13-10-2018 RAM_36665 ae647e243be5fddeae9fff4cc2bbcc06 532 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 139 148 3.5E-5 T 13-10-2018 RAM_36665 ae647e243be5fddeae9fff4cc2bbcc06 532 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 181 206 3.5E-5 T 13-10-2018 RAM_25290 8ce729186158b67aa16a0384efbe6af6 242 Pfam PF14011 EspG family 5 235 3.8E-48 T 13-10-2018 IPR025734 EspG family RAM_41415 9aba63f24164572ef2c6d5aedd606e22 245 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 58 63 - T 13-10-2018 IPR018114 Serine proteases, trypsin family, histidine active site GO:0004252|GO:0006508 RAM_41415 9aba63f24164572ef2c6d5aedd606e22 245 Gene3D G3DSA:2.40.10.10 15 245 5.4E-47 T 13-10-2018 RAM_41415 9aba63f24164572ef2c6d5aedd606e22 245 SMART SM00020 21 239 4.1E-42 T 13-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 RAM_41415 9aba63f24164572ef2c6d5aedd606e22 245 Pfam PF00089 Trypsin 27 239 4.8E-38 T 13-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 RAM_41415 9aba63f24164572ef2c6d5aedd606e22 245 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 48 63 1.9E-12 T 13-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 RAM_41415 9aba63f24164572ef2c6d5aedd606e22 245 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 103 117 1.9E-12 T 13-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 RAM_41415 9aba63f24164572ef2c6d5aedd606e22 245 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 187 199 1.9E-12 T 13-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 RAM_41415 9aba63f24164572ef2c6d5aedd606e22 245 SUPERFAMILY SSF50494 7 244 6.12E-53 T 13-10-2018 IPR009003 Peptidase S1, PA clan RAM_06595 4df8e7ccfc5cc3217ef0ddcd96d278c9 369 Pfam PF00296 Luciferase-like monooxygenase 1 291 3.1E-55 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_06595 4df8e7ccfc5cc3217ef0ddcd96d278c9 369 SUPERFAMILY SSF51679 1 333 2.49E-71 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_06595 4df8e7ccfc5cc3217ef0ddcd96d278c9 369 Gene3D G3DSA:3.20.20.30 1 343 2.0E-68 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_06595 4df8e7ccfc5cc3217ef0ddcd96d278c9 369 TIGRFAM TIGR04036 LLM_CE1758_fam: putative luciferase-like monooxygenase, FMN-dependent, CE1758 family 1 354 7.9E-218 T 13-10-2018 IPR023934 Luciferase-like monooxygenase, FMN-dependent, putative RAM_04900 f3decbd613450bd8cec9655293ec4aed 219 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 67 1.7E-13 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_04900 f3decbd613450bd8cec9655293ec4aed 219 SUPERFAMILY SSF46689 12 82 6.79E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_04900 f3decbd613450bd8cec9655293ec4aed 219 Gene3D G3DSA:1.10.10.60 2 64 1.3E-13 T 13-10-2018 RAM_04900 f3decbd613450bd8cec9655293ec4aed 219 Gene3D G3DSA:1.10.357.10 65 210 2.3E-13 T 13-10-2018 RAM_04900 f3decbd613450bd8cec9655293ec4aed 219 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 43 66 2.7E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_04900 f3decbd613450bd8cec9655293ec4aed 219 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 22 35 2.7E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_04900 f3decbd613450bd8cec9655293ec4aed 219 SUPERFAMILY SSF48498 87 204 8.16E-7 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_02430 6a5b7d7457cf98b5b8f8e4f738aa3d90 269 Gene3D G3DSA:3.40.50.1000 21 233 2.3E-60 T 13-10-2018 IPR023214 HAD superfamily RAM_02430 6a5b7d7457cf98b5b8f8e4f738aa3d90 269 Gene3D G3DSA:1.20.1440.100 32 108 2.3E-60 T 13-10-2018 RAM_02430 6a5b7d7457cf98b5b8f8e4f738aa3d90 269 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 20 210 5.8E-18 T 13-10-2018 RAM_02430 6a5b7d7457cf98b5b8f8e4f738aa3d90 269 Pfam PF12710 haloacid dehalogenase-like hydrolase 21 207 1.3E-25 T 13-10-2018 RAM_02430 6a5b7d7457cf98b5b8f8e4f738aa3d90 269 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 20 221 4.0E-54 T 13-10-2018 IPR006385 HAD-superfamily hydrolase, subfamily IB, SerB1-like RAM_02430 6a5b7d7457cf98b5b8f8e4f738aa3d90 269 SUPERFAMILY SSF56784 20 238 3.25E-28 T 13-10-2018 IPR036412 HAD-like superfamily RAM_29300 66697b3a9a73ca813ab899ed7d61e329 146 Pfam PF03779 SPW repeat 84 129 2.2E-6 T 13-10-2018 IPR005530 SPW repeat RAM_03070 3debab485f35073e5d61c9f14e7a429c 127 SUPERFAMILY SSF48300 5 62 3.53E-14 T 13-10-2018 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_03070 3debab485f35073e5d61c9f14e7a429c 127 SUPERFAMILY SSF54736 55 127 2.62E-21 T 13-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like RAM_03070 3debab485f35073e5d61c9f14e7a429c 127 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 60 127 1.6E-26 T 13-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_03070 3debab485f35073e5d61c9f14e7a429c 127 Gene3D G3DSA:3.30.1390.10 57 127 1.1E-27 T 13-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like RAM_03070 3debab485f35073e5d61c9f14e7a429c 127 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 3 127 23.748 T 13-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_03070 3debab485f35073e5d61c9f14e7a429c 127 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 127 3.3E-47 T 13-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_03070 3debab485f35073e5d61c9f14e7a429c 127 Gene3D G3DSA:1.20.5.710 4 56 7.8E-19 T 13-10-2018 RAM_03070 3debab485f35073e5d61c9f14e7a429c 127 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 6 52 4.5E-19 T 13-10-2018 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_03070 3debab485f35073e5d61c9f14e7a429c 127 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 61 98 4.0E-13 T 13-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_08045 6a65f006fdfc98f9725dad8a2f58c9ed 535 Gene3D G3DSA:1.20.1730.10 18 522 2.1E-56 T 13-10-2018 IPR038377 Sodium/glucose symporter superfamily RAM_08045 6a65f006fdfc98f9725dad8a2f58c9ed 535 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 44 453 2.2E-57 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 RAM_08045 6a65f006fdfc98f9725dad8a2f58c9ed 535 Pfam PF00474 Sodium:solute symporter family 44 454 8.0E-93 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 RAM_08775 aa429d225db226daede10737f0dfabae 793 SUPERFAMILY SSF140356 113 217 2.09E-35 T 13-10-2018 IPR036832 Polyphosphate kinase N-terminal domain superfamily KEGG: 00190+2.7.4.1 RAM_08775 aa429d225db226daede10737f0dfabae 793 SUPERFAMILY SSF56024 436 609 3.77E-57 T 13-10-2018 RAM_08775 aa429d225db226daede10737f0dfabae 793 Gene3D G3DSA:3.30.870.10 612 791 4.9E-57 T 13-10-2018 RAM_08775 aa429d225db226daede10737f0dfabae 793 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 115 782 6.8E-250 T 13-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 RAM_08775 aa429d225db226daede10737f0dfabae 793 Gene3D G3DSA:3.30.1840.10 109 421 1.0E-114 T 13-10-2018 IPR036830 Polyphosphate kinase middle domain superfamily KEGG: 00190+2.7.4.1 RAM_08775 aa429d225db226daede10737f0dfabae 793 Pfam PF02503 Polyphosphate kinase middle domain 234 430 8.2E-70 T 13-10-2018 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 RAM_08775 aa429d225db226daede10737f0dfabae 793 SUPERFAMILY SSF143724 219 420 4.32E-67 T 13-10-2018 RAM_08775 aa429d225db226daede10737f0dfabae 793 SUPERFAMILY SSF56024 613 788 8.97E-61 T 13-10-2018 RAM_08775 aa429d225db226daede10737f0dfabae 793 Hamap MF_00347 Polyphosphate kinase [ppk]. 113 791 28.173 T 13-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 RAM_08775 aa429d225db226daede10737f0dfabae 793 Pfam PF13089 Polyphosphate kinase N-terminal domain 116 222 1.1E-35 T 13-10-2018 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 RAM_08775 aa429d225db226daede10737f0dfabae 793 Gene3D G3DSA:3.30.870.10 427 611 3.0E-74 T 13-10-2018 RAM_08775 aa429d225db226daede10737f0dfabae 793 Pfam PF13090 Polyphosphate kinase C-terminal domain 441 782 6.3E-147 T 13-10-2018 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 RAM_08775 aa429d225db226daede10737f0dfabae 793 PIRSF PIRSF015589 96 791 1.6E-268 T 13-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 RAM_36090 d26a901682b0a3f070cae32bd8125550 896 TIGRFAM TIGR01180 aman2_put: putative alpha-1,2-mannosidase 17 731 1.1E-142 T 13-10-2018 IPR005887 Alpha-1,2-mannosidase, putative RAM_36090 d26a901682b0a3f070cae32bd8125550 896 SUPERFAMILY SSF48208 281 712 3.57E-12 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_36090 d26a901682b0a3f070cae32bd8125550 896 SUPERFAMILY SSF49785 757 895 6.95E-22 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_36090 d26a901682b0a3f070cae32bd8125550 896 Gene3D G3DSA:2.70.98.10 33 367 9.1E-220 T 13-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 RAM_36090 d26a901682b0a3f070cae32bd8125550 896 Gene3D G3DSA:3.30.2080.10 316 732 9.1E-220 T 13-10-2018 RAM_36090 d26a901682b0a3f070cae32bd8125550 896 Gene3D G3DSA:2.60.120.260 757 896 1.8E-37 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_36090 d26a901682b0a3f070cae32bd8125550 896 Gene3D G3DSA:1.20.1610.10 463 605 9.1E-220 T 13-10-2018 RAM_36090 d26a901682b0a3f070cae32bd8125550 896 Pfam PF00754 F5/8 type C domain 769 891 9.1E-15 T 13-10-2018 IPR000421 Coagulation factor 5/8 C-terminal domain RAM_36090 d26a901682b0a3f070cae32bd8125550 896 Gene3D G3DSA:1.20.1050.60 368 462 9.1E-220 T 13-10-2018 RAM_36090 d26a901682b0a3f070cae32bd8125550 896 Pfam PF07971 Glycosyl hydrolase family 92 257 728 1.6E-148 T 13-10-2018 IPR012939 Glycosyl hydrolase family 92 RAM_09950 9243864632f5526980d389dc7e4a5ac4 253 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 22 221 2.4E-68 T 13-10-2018 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RAM_09950 9243864632f5526980d389dc7e4a5ac4 253 Gene3D G3DSA:1.10.1270.20 164 250 4.6E-30 T 13-10-2018 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RAM_09950 9243864632f5526980d389dc7e4a5ac4 253 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 1 227 9.7E-76 T 13-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RAM_09950 9243864632f5526980d389dc7e4a5ac4 253 PIRSF PIRSF000386 1 245 3.8E-92 T 13-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RAM_09950 9243864632f5526980d389dc7e4a5ac4 253 Gene3D G3DSA:3.40.1280.10 1 163 1.6E-66 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RAM_09950 9243864632f5526980d389dc7e4a5ac4 253 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 253 101.387 T 13-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RAM_09950 9243864632f5526980d389dc7e4a5ac4 253 SUPERFAMILY SSF75217 2 231 1.37E-88 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases RAM_07795 9f64164c19fd6ac11e4bdd3ca80b7931 643 SUPERFAMILY SSF54897 30 185 2.72E-37 T 13-10-2018 RAM_07795 9f64164c19fd6ac11e4bdd3ca80b7931 643 Gene3D G3DSA:3.40.50.200 234 642 2.3E-89 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RAM_07795 9f64164c19fd6ac11e4bdd3ca80b7931 643 SMART SM00944 41 182 8.7E-44 T 13-10-2018 IPR015366 Peptidase S53, activation domain GO:0008236 Reactome: R-HSA-381038 RAM_07795 9f64164c19fd6ac11e4bdd3ca80b7931 643 Pfam PF09286 Pro-kumamolisin, activation domain 45 181 1.5E-30 T 13-10-2018 IPR015366 Peptidase S53, activation domain GO:0008236 Reactome: R-HSA-381038 RAM_07795 9f64164c19fd6ac11e4bdd3ca80b7931 643 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 540 550 - T 13-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site RAM_07795 9f64164c19fd6ac11e4bdd3ca80b7931 643 SUPERFAMILY SSF52743 235 637 1.44E-52 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RAM_07795 9f64164c19fd6ac11e4bdd3ca80b7931 643 Pfam PF00082 Subtilase family 320 556 1.8E-10 T 13-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RAM_37905 29b146593f6a7b6d3a47023b51a68ffb 470 Gene3D G3DSA:3.90.1300.10 2 457 2.5E-119 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RAM_37905 29b146593f6a7b6d3a47023b51a68ffb 470 Pfam PF01425 Amidase 5 445 4.8E-99 T 13-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RAM_37905 29b146593f6a7b6d3a47023b51a68ffb 470 SUPERFAMILY SSF75304 1 457 8.9E-115 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RAM_37905 29b146593f6a7b6d3a47023b51a68ffb 470 ProSitePatterns PS00571 Amidases signature. 132 163 - T 13-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 RAM_33885 88807ed7a186a12f8f26d906ab52632d 462 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 158 287 1.1E-8 T 13-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 RAM_33885 88807ed7a186a12f8f26d906ab52632d 462 Pfam PF03129 Anticodon binding domain 368 456 8.9E-24 T 13-10-2018 IPR004154 Anticodon-binding RAM_33885 88807ed7a186a12f8f26d906ab52632d 462 SUPERFAMILY SSF55681 5 371 1.65E-120 T 13-10-2018 RAM_33885 88807ed7a186a12f8f26d906ab52632d 462 Hamap MF_00253_B Glycine--tRNA ligase [glyQS]. 3 460 50.057 T 13-10-2018 IPR022961 Glycine-tRNA ligase, bacterial GO:0004820 KEGG: 00970+6.1.1.14 RAM_33885 88807ed7a186a12f8f26d906ab52632d 462 SUPERFAMILY SSF52954 355 459 1.66E-33 T 13-10-2018 RAM_33885 88807ed7a186a12f8f26d906ab52632d 462 TIGRFAM TIGR00389 glyS_dimeric: glycine--tRNA ligase 6 234 8.7E-84 T 13-10-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RAM_33885 88807ed7a186a12f8f26d906ab52632d 462 PRINTS PR01043 Glycyl-tRNA synthetase signature 25 39 1.6E-54 T 13-10-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RAM_33885 88807ed7a186a12f8f26d906ab52632d 462 PRINTS PR01043 Glycyl-tRNA synthetase signature 191 208 1.6E-54 T 13-10-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RAM_33885 88807ed7a186a12f8f26d906ab52632d 462 PRINTS PR01043 Glycyl-tRNA synthetase signature 159 176 1.6E-54 T 13-10-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RAM_33885 88807ed7a186a12f8f26d906ab52632d 462 PRINTS PR01043 Glycyl-tRNA synthetase signature 405 424 1.6E-54 T 13-10-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RAM_33885 88807ed7a186a12f8f26d906ab52632d 462 PRINTS PR01043 Glycyl-tRNA synthetase signature 138 150 1.6E-54 T 13-10-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RAM_33885 88807ed7a186a12f8f26d906ab52632d 462 PRINTS PR01043 Glycyl-tRNA synthetase signature 319 331 1.6E-54 T 13-10-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RAM_33885 88807ed7a186a12f8f26d906ab52632d 462 PRINTS PR01043 Glycyl-tRNA synthetase signature 208 218 1.6E-54 T 13-10-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RAM_33885 88807ed7a186a12f8f26d906ab52632d 462 Gene3D G3DSA:3.40.50.800 366 460 3.3E-33 T 13-10-2018 IPR036621 Anticodon-binding domain superfamily RAM_30250 87d9d3b804e89f99aa6cb35d97c7e7df 338 Gene3D G3DSA:3.20.20.100 6 334 1.2E-102 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_30250 87d9d3b804e89f99aa6cb35d97c7e7df 338 SUPERFAMILY SSF51430 7 318 3.4E-87 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_30250 87d9d3b804e89f99aa6cb35d97c7e7df 338 Pfam PF00248 Aldo/keto reductase family 19 317 3.3E-66 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain RAM_08330 e905e626b7de7a298ca345ac5fa0ab9f 516 SUPERFAMILY SSF52025 67 130 9.29E-6 T 13-10-2018 RAM_08330 e905e626b7de7a298ca345ac5fa0ab9f 516 Gene3D G3DSA:3.50.30.30 64 173 1.0E-6 T 13-10-2018 RAM_45065 3352816c6b82e0f719291d7d56dfe4ab 510 Pfam PF12307 Protein of unknown function (DUF3631) 251 435 1.3E-65 T 13-10-2018 IPR022081 Domain of unknown function DUF3631 RAM_33455 909428ab69e90d3822bffe2d780f2741 311 SUPERFAMILY SSF46689 260 309 1.88E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_33455 909428ab69e90d3822bffe2d780f2741 311 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 260 302 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RAM_33455 909428ab69e90d3822bffe2d780f2741 311 SUPERFAMILY SSF52317 4 189 2.04E-46 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_33455 909428ab69e90d3822bffe2d780f2741 311 SMART SM00342 223 306 2.3E-27 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_33455 909428ab69e90d3822bffe2d780f2741 311 Gene3D G3DSA:3.40.50.880 2 201 1.8E-58 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_33455 909428ab69e90d3822bffe2d780f2741 311 SUPERFAMILY SSF46689 209 256 6.65E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_33455 909428ab69e90d3822bffe2d780f2741 311 Gene3D G3DSA:1.10.10.60 207 311 2.0E-25 T 13-10-2018 RAM_33455 909428ab69e90d3822bffe2d780f2741 311 Pfam PF12833 Helix-turn-helix domain 229 307 3.1E-21 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_33455 909428ab69e90d3822bffe2d780f2741 311 Pfam PF01965 DJ-1/PfpI family 4 168 1.5E-20 T 13-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 RAM_34770 801c382e339466d7687cb1305709e99b 394 Gene3D G3DSA:1.20.1250.20 2 374 1.4E-48 T 13-10-2018 RAM_34770 801c382e339466d7687cb1305709e99b 394 SUPERFAMILY SSF103473 4 375 1.96E-56 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_34770 801c382e339466d7687cb1305709e99b 394 PRINTS PR01035 Tetracycline resistance protein signature 40 59 8.8E-5 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RAM_34770 801c382e339466d7687cb1305709e99b 394 PRINTS PR01035 Tetracycline resistance protein signature 133 155 8.8E-5 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RAM_34770 801c382e339466d7687cb1305709e99b 394 PRINTS PR01035 Tetracycline resistance protein signature 10 26 8.8E-5 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RAM_34770 801c382e339466d7687cb1305709e99b 394 Pfam PF07690 Major Facilitator Superfamily 8 328 3.7E-38 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_21575 24a1b9d103e0f267a3ce6a2b370618d1 164 Gene3D G3DSA:3.30.70.920 70 161 9.9E-14 T 13-10-2018 RAM_21575 24a1b9d103e0f267a3ce6a2b370618d1 164 Pfam PF01037 Lrp/AsnC ligand binding domain 85 153 2.1E-12 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RAM_21575 24a1b9d103e0f267a3ce6a2b370618d1 164 SUPERFAMILY SSF54909 81 161 8.58E-12 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_21575 24a1b9d103e0f267a3ce6a2b370618d1 164 SUPERFAMILY SSF46785 18 66 3.33E-11 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_21575 24a1b9d103e0f267a3ce6a2b370618d1 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 35 46 4.3E-13 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_21575 24a1b9d103e0f267a3ce6a2b370618d1 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 46 65 4.3E-13 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_21575 24a1b9d103e0f267a3ce6a2b370618d1 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 19 35 4.3E-13 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_21575 24a1b9d103e0f267a3ce6a2b370618d1 164 SMART SM00344 19 123 1.1E-28 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RAM_21575 24a1b9d103e0f267a3ce6a2b370618d1 164 Pfam PF13404 AsnC-type helix-turn-helix domain 19 59 1.3E-15 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_21575 24a1b9d103e0f267a3ce6a2b370618d1 164 Gene3D G3DSA:1.10.10.10 17 69 5.2E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_37835 027559d440b0325a626698fafa235a70 290 Pfam PF04203 Sortase family 85 206 3.3E-16 T 13-10-2018 IPR005754 Sortase family RAM_37835 027559d440b0325a626698fafa235a70 290 SUPERFAMILY SSF63817 75 207 1.24E-15 T 13-10-2018 IPR023365 Sortase domain superfamily RAM_37835 027559d440b0325a626698fafa235a70 290 Gene3D G3DSA:2.40.260.10 43 214 1.3E-25 T 13-10-2018 IPR023365 Sortase domain superfamily RAM_47365 abd5e0cf379a9be603a5346155bb8f22 174 Pfam PF07681 DoxX 2 94 1.1E-9 T 13-10-2018 IPR032808 DoxX family RAM_38085 bd749c71cc301eedd0b75a0c5f7dd97b 438 Pfam PF13229 Right handed beta helix region 149 323 1.9E-8 T 13-10-2018 IPR039448 Right handed beta helix domain RAM_38085 bd749c71cc301eedd0b75a0c5f7dd97b 438 Gene3D G3DSA:2.160.20.10 20 438 2.5E-119 T 13-10-2018 IPR012334 Pectin lyase fold RAM_38085 bd749c71cc301eedd0b75a0c5f7dd97b 438 SUPERFAMILY SSF51126 23 437 6.48E-65 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor RAM_46480 c1b1371045247c63de04067b32b37e76 247 SUPERFAMILY SSF52540 11 242 2.28E-75 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_46480 c1b1371045247c63de04067b32b37e76 247 Pfam PF00005 ABC transporter 26 172 3.3E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_46480 c1b1371045247c63de04067b32b37e76 247 SMART SM00382 35 220 6.6E-19 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_46480 c1b1371045247c63de04067b32b37e76 247 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_46480 c1b1371045247c63de04067b32b37e76 247 Gene3D G3DSA:3.40.50.300 9 247 1.8E-78 T 13-10-2018 RAM_46480 c1b1371045247c63de04067b32b37e76 247 PIRSF PIRSF039085 7 247 1.8E-99 T 13-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 RAM_31350 2e729ea3f1f60152e12e3d4d01a0afde 129 SUPERFAMILY SSF54593 3 122 4.43E-20 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_31350 2e729ea3f1f60152e12e3d4d01a0afde 129 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 116 5.4E-7 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RAM_31350 2e729ea3f1f60152e12e3d4d01a0afde 129 Gene3D G3DSA:3.10.180.10 3 123 1.8E-31 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_18395 f4f3e4e682878163f70b4d479ab5c406 72 SUPERFAMILY SSF53850 11 70 1.28E-9 T 13-10-2018 RAM_18395 f4f3e4e682878163f70b4d479ab5c406 72 Gene3D G3DSA:3.40.190.10 2 72 3.0E-12 T 13-10-2018 RAM_47125 f1c0aa9871b3f0f4fcea5d0fbb4fb149 108 SUPERFAMILY SSF142906 1 106 1.18E-9 T 13-10-2018 IPR038056 YjbR-like superfamily RAM_47125 f1c0aa9871b3f0f4fcea5d0fbb4fb149 108 Pfam PF04237 YjbR 13 100 4.9E-14 T 13-10-2018 IPR007351 Uncharacterised protein YjbR RAM_28395 d29885fde12b6a58d80996930e926102 187 Pfam PF03358 NADPH-dependent FMN reductase 5 146 1.1E-35 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 RAM_28395 d29885fde12b6a58d80996930e926102 187 SUPERFAMILY SSF52218 1 148 4.35E-38 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RAM_28395 d29885fde12b6a58d80996930e926102 187 Gene3D G3DSA:3.40.50.360 1 187 7.2E-47 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RAM_26275 4bd89701f3d8bb68c19d03cd6c216052 491 SUPERFAMILY SSF56801 48 447 4.27E-9 T 13-10-2018 RAM_26275 4bd89701f3d8bb68c19d03cd6c216052 491 Gene3D G3DSA:3.40.50.12780 35 355 9.1E-32 T 13-10-2018 RAM_18270 5ace453833378541c842a911e144482e 202 Gene3D G3DSA:1.10.357.10 57 187 8.8E-18 T 13-10-2018 RAM_18270 5ace453833378541c842a911e144482e 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 8.0E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_18270 5ace453833378541c842a911e144482e 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 8.0E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_18270 5ace453833378541c842a911e144482e 202 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 62 1.4E-16 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_18270 5ace453833378541c842a911e144482e 202 Gene3D G3DSA:1.10.10.60 5 55 2.4E-23 T 13-10-2018 RAM_18270 5ace453833378541c842a911e144482e 202 SUPERFAMILY SSF46689 5 77 9.23E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_03100 e2a1528160c87bf67d3bfcdd904c6100 328 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 128 152 9.7E-14 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_03100 e2a1528160c87bf67d3bfcdd904c6100 328 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 28 48 9.7E-14 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_03100 e2a1528160c87bf67d3bfcdd904c6100 328 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 90 106 9.7E-14 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_03100 e2a1528160c87bf67d3bfcdd904c6100 328 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 246 265 9.7E-14 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_03100 e2a1528160c87bf67d3bfcdd904c6100 328 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 297 316 9.7E-14 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_03100 e2a1528160c87bf67d3bfcdd904c6100 328 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 177 195 9.7E-14 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_03100 e2a1528160c87bf67d3bfcdd904c6100 328 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 12 291 7.9E-62 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_03100 e2a1528160c87bf67d3bfcdd904c6100 328 Pfam PF02470 MlaD protein 39 112 2.4E-15 T 13-10-2018 IPR003399 Mce/MlaD RAM_17760 3853f9b42a0878b5e18bfd9fc219cfdd 253 Pfam PF00106 short chain dehydrogenase 4 85 3.0E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17760 3853f9b42a0878b5e18bfd9fc219cfdd 253 Gene3D G3DSA:3.40.50.720 2 241 7.8E-37 T 13-10-2018 RAM_17760 3853f9b42a0878b5e18bfd9fc219cfdd 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 9.1E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17760 3853f9b42a0878b5e18bfd9fc219cfdd 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 175 9.1E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17760 3853f9b42a0878b5e18bfd9fc219cfdd 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 9.1E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17760 3853f9b42a0878b5e18bfd9fc219cfdd 253 SUPERFAMILY SSF51735 3 188 1.55E-34 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_17965 5a22b202d3a5538ee3cc0d6214abbd4a 414 Gene3D G3DSA:3.50.50.60 214 351 2.5E-17 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_17965 5a22b202d3a5538ee3cc0d6214abbd4a 414 Pfam PF01494 FAD binding domain 1 323 4.3E-46 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_17965 5a22b202d3a5538ee3cc0d6214abbd4a 414 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 290 306 3.8E-7 T 13-10-2018 RAM_17965 5a22b202d3a5538ee3cc0d6214abbd4a 414 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 275 290 3.8E-7 T 13-10-2018 RAM_17965 5a22b202d3a5538ee3cc0d6214abbd4a 414 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 148 163 3.8E-7 T 13-10-2018 RAM_17965 5a22b202d3a5538ee3cc0d6214abbd4a 414 SUPERFAMILY SSF51905 2 371 9.18E-43 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_17965 5a22b202d3a5538ee3cc0d6214abbd4a 414 Gene3D G3DSA:3.50.50.60 1 184 3.1E-26 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_34105 cecfb367cd29b6757d9909dd0853d25a 486 Pfam PF00561 alpha/beta hydrolase fold 77 230 3.9E-20 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_34105 cecfb367cd29b6757d9909dd0853d25a 486 SUPERFAMILY SSF53474 74 442 7.47E-20 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_34105 cecfb367cd29b6757d9909dd0853d25a 486 Pfam PF08386 TAP-like protein 371 470 4.0E-18 T 13-10-2018 IPR013595 Peptidase S33 tripeptidyl aminopeptidase-like, C-terminal RAM_03810 edf7124ae3de6274b660b0f98fd50ab0 220 Pfam PF00814 Glycoprotease family 36 137 3.0E-25 T 13-10-2018 IPR000905 Gcp-like domain RAM_03810 edf7124ae3de6274b660b0f98fd50ab0 220 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 2 204 1.5E-52 T 13-10-2018 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB GO:0002949 RAM_03810 edf7124ae3de6274b660b0f98fd50ab0 220 Gene3D G3DSA:3.30.420.40 98 175 1.2E-41 T 13-10-2018 RAM_03810 edf7124ae3de6274b660b0f98fd50ab0 220 SUPERFAMILY SSF53067 112 202 1.36E-10 T 13-10-2018 RAM_03810 edf7124ae3de6274b660b0f98fd50ab0 220 SUPERFAMILY SSF53067 2 104 1.21E-21 T 13-10-2018 RAM_03810 edf7124ae3de6274b660b0f98fd50ab0 220 Gene3D G3DSA:3.30.420.40 2 204 1.2E-41 T 13-10-2018 RAM_34555 581f6b7c4ed197e332cc1f1dd0477337 317 SUPERFAMILY SSF53474 74 312 1.65E-20 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_34555 581f6b7c4ed197e332cc1f1dd0477337 317 Gene3D G3DSA:3.40.50.1820 79 312 3.1E-21 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_34555 581f6b7c4ed197e332cc1f1dd0477337 317 Pfam PF00756 Putative esterase 83 211 3.5E-8 T 13-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 RAM_18470 7fea00e7aa6904a765b560dbd10ae8c1 593 SUPERFAMILY SSF52777 218 467 7.23E-11 T 13-10-2018 RAM_18470 7fea00e7aa6904a765b560dbd10ae8c1 593 Gene3D G3DSA:3.30.559.10 42 220 1.5E-14 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_18470 7fea00e7aa6904a765b560dbd10ae8c1 593 SUPERFAMILY SSF52777 40 230 4.34E-15 T 13-10-2018 RAM_18470 7fea00e7aa6904a765b560dbd10ae8c1 593 Gene3D G3DSA:3.30.559.30 221 476 2.6E-12 T 13-10-2018 RAM_18470 7fea00e7aa6904a765b560dbd10ae8c1 593 Pfam PF00668 Condensation domain 77 320 8.3E-15 T 13-10-2018 IPR001242 Condensation domain RAM_35140 98b75e6d2e50fbf3cd0caa3487fb2496 481 SUPERFAMILY SSF53720 5 477 1.13E-152 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RAM_35140 98b75e6d2e50fbf3cd0caa3487fb2496 481 Gene3D G3DSA:3.40.605.10 23 473 7.0E-163 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RAM_35140 98b75e6d2e50fbf3cd0caa3487fb2496 481 Gene3D G3DSA:3.40.309.10 255 444 7.0E-163 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RAM_35140 98b75e6d2e50fbf3cd0caa3487fb2496 481 Pfam PF00171 Aldehyde dehydrogenase family 14 475 9.1E-151 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RAM_35140 98b75e6d2e50fbf3cd0caa3487fb2496 481 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 251 258 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 RAM_17100 7acdae446800ceff863150f5cf24de74 363 ProSitePatterns PS00545 Aldose 1-epimerase putative active site. 184 193 - T 13-10-2018 IPR018052 Aldose 1-epimerase, conserved site KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317 RAM_17100 7acdae446800ceff863150f5cf24de74 363 Gene3D G3DSA:2.70.98.10 2 356 5.3E-125 T 13-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 RAM_17100 7acdae446800ceff863150f5cf24de74 363 PIRSF PIRSF005096 3 357 3.4E-124 T 13-10-2018 IPR015443 Aldose 1-epimerase GO:0016853|GO:0019318 KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317 RAM_17100 7acdae446800ceff863150f5cf24de74 363 Pfam PF01263 Aldose 1-epimerase 21 352 6.9E-89 T 13-10-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 RAM_17100 7acdae446800ceff863150f5cf24de74 363 SUPERFAMILY SSF74650 9 353 1.38E-111 T 13-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 RAM_37290 93f6651cf01fe872e334f76053bc8440 298 SUPERFAMILY SSF161098 27 298 8.97E-74 T 13-10-2018 IPR035906 MetI-like superfamily RAM_37290 93f6651cf01fe872e334f76053bc8440 298 Gene3D G3DSA:1.10.3720.10 24 290 2.2E-69 T 13-10-2018 IPR035906 MetI-like superfamily RAM_37290 93f6651cf01fe872e334f76053bc8440 298 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 116 288 1.4E-22 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_12640 8d1559c5538a8f2aa1795e76dcf45e55 113 TIGRFAM TIGR03954 integ_memb_HG: integral membrane protein 21 103 4.3E-30 T 13-10-2018 IPR023845 Domain of unknown function DUF3817, transmembrane RAM_12640 8d1559c5538a8f2aa1795e76dcf45e55 113 Pfam PF12823 Domain of unknown function (DUF3817) 19 104 4.2E-26 T 13-10-2018 IPR023845 Domain of unknown function DUF3817, transmembrane RAM_03080 8386f1f42a173beaf940d3a7a08b880b 250 Pfam PF02405 Permease MlaE 29 240 6.4E-64 T 13-10-2018 IPR030802 ABC transporter permease MalE GO:0043190 RAM_38505 e81d05ec3908d884c8582399e79e7cfc 309 Gene3D G3DSA:3.40.50.1820 48 309 1.7E-78 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_38505 e81d05ec3908d884c8582399e79e7cfc 309 SUPERFAMILY SSF53474 58 300 1.36E-42 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_18060 eab817efd98a2bf2a1bb473dc96e8843 234 Gene3D G3DSA:3.40.50.12740 3 228 1.7E-65 T 13-10-2018 RAM_18060 eab817efd98a2bf2a1bb473dc96e8843 234 SMART SM00448 3 115 2.3E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_18060 eab817efd98a2bf2a1bb473dc96e8843 234 SUPERFAMILY SSF52172 3 133 1.18E-31 T 13-10-2018 IPR011006 CheY-like superfamily RAM_18060 eab817efd98a2bf2a1bb473dc96e8843 234 Pfam PF00072 Response regulator receiver domain 5 116 8.0E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_18060 eab817efd98a2bf2a1bb473dc96e8843 234 SUPERFAMILY SSF46894 162 226 1.46E-20 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_18060 eab817efd98a2bf2a1bb473dc96e8843 234 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 200 212 9.4E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_18060 eab817efd98a2bf2a1bb473dc96e8843 234 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 184 200 9.4E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_18060 eab817efd98a2bf2a1bb473dc96e8843 234 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 170 184 9.4E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_18060 eab817efd98a2bf2a1bb473dc96e8843 234 Pfam PF00196 Bacterial regulatory proteins, luxR family 169 224 2.9E-19 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_18060 eab817efd98a2bf2a1bb473dc96e8843 234 SMART SM00421 167 224 1.6E-25 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_33870 dba135a0012c268f3b0651e842aab33f 400 SUPERFAMILY SSF55874 286 381 4.4E-7 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_33870 dba135a0012c268f3b0651e842aab33f 400 Gene3D G3DSA:3.30.565.10 268 381 8.4E-19 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_33870 dba135a0012c268f3b0651e842aab33f 400 Pfam PF07730 Histidine kinase 199 266 9.8E-16 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_11220 c5d3252808d9d78b6d28f3ff72f72022 560 Gene3D G3DSA:1.20.810.10 16 436 1.7E-90 T 13-10-2018 IPR027387 Cytochrome b/b6-like domain superfamily Reactome: R-HSA-611105 RAM_11220 c5d3252808d9d78b6d28f3ff72f72022 560 Pfam PF13631 Cytochrome b(N-terminal)/b6/petB 124 298 6.4E-62 T 13-10-2018 IPR005797 Cytochrome b/b6, N-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 RAM_11220 c5d3252808d9d78b6d28f3ff72f72022 560 SUPERFAMILY SSF81342 24 303 5.65E-61 T 13-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 RAM_19495 797c1da6dc6a3940c0b01cc1dcd7e24f 410 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 234 396 1.2E-28 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_19495 797c1da6dc6a3940c0b01cc1dcd7e24f 410 Gene3D G3DSA:1.10.540.10 2 123 9.3E-31 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_19495 797c1da6dc6a3940c0b01cc1dcd7e24f 410 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 128 220 1.1E-21 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RAM_19495 797c1da6dc6a3940c0b01cc1dcd7e24f 410 SUPERFAMILY SSF56645 2 245 5.89E-73 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_19495 797c1da6dc6a3940c0b01cc1dcd7e24f 410 SUPERFAMILY SSF47203 234 398 1.11E-25 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_19495 797c1da6dc6a3940c0b01cc1dcd7e24f 410 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 124 4.8E-24 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_19495 797c1da6dc6a3940c0b01cc1dcd7e24f 410 Gene3D G3DSA:1.20.140.10 239 404 3.1E-37 T 13-10-2018 RAM_19495 797c1da6dc6a3940c0b01cc1dcd7e24f 410 Gene3D G3DSA:2.40.110.10 128 238 8.9E-36 T 13-10-2018 RAM_46180 59fab9e7596c3e97cbe39a3e866c47d1 258 Gene3D G3DSA:3.40.50.300 2 256 5.4E-63 T 13-10-2018 RAM_46180 59fab9e7596c3e97cbe39a3e866c47d1 258 SMART SM00382 29 229 2.4E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_46180 59fab9e7596c3e97cbe39a3e866c47d1 258 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 5 258 2.4E-114 T 13-10-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 RAM_46180 59fab9e7596c3e97cbe39a3e866c47d1 258 SUPERFAMILY SSF52540 5 245 9.08E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_46180 59fab9e7596c3e97cbe39a3e866c47d1 258 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_46180 59fab9e7596c3e97cbe39a3e866c47d1 258 Pfam PF00005 ABC transporter 21 176 3.7E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_44990 bc74f1e283ab996bf4128484a47bf3ae 404 Gene3D G3DSA:1.25.40.10 112 389 2.5E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_44990 bc74f1e283ab996bf4128484a47bf3ae 404 SMART SM00530 10 66 1.3E-11 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_44990 bc74f1e283ab996bf4128484a47bf3ae 404 Pfam PF13560 Helix-turn-helix domain 7 65 2.8E-11 T 13-10-2018 RAM_44990 bc74f1e283ab996bf4128484a47bf3ae 404 Gene3D G3DSA:1.10.260.40 2 71 2.6E-15 T 13-10-2018 RAM_44990 bc74f1e283ab996bf4128484a47bf3ae 404 SUPERFAMILY SSF47413 5 71 7.78E-14 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_36370 5e02a28f9525706507e1b44ee614ac3c 897 Pfam PF03704 Bacterial transcriptional activator domain 752 893 9.6E-8 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_36370 5e02a28f9525706507e1b44ee614ac3c 897 SMART SM01043 752 894 1.7E-14 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_36370 5e02a28f9525706507e1b44ee614ac3c 897 SMART SM00257 212 268 0.11 T 13-10-2018 IPR018392 LysM domain RAM_36370 5e02a28f9525706507e1b44ee614ac3c 897 SMART SM00257 147 203 0.81 T 13-10-2018 IPR018392 LysM domain RAM_36370 5e02a28f9525706507e1b44ee614ac3c 897 Gene3D G3DSA:3.10.350.10 147 201 2.8E-5 T 13-10-2018 IPR036779 LysM domain superfamily RAM_36370 5e02a28f9525706507e1b44ee614ac3c 897 Gene3D G3DSA:1.25.40.10 751 897 2.3E-14 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_36370 5e02a28f9525706507e1b44ee614ac3c 897 SUPERFAMILY SSF48452 752 891 7.96E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_17470 0c5409158b24224f31f9094677cd536a 145 SMART SM00347 32 132 1.4E-18 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_17470 0c5409158b24224f31f9094677cd536a 145 SUPERFAMILY SSF46785 7 143 5.09E-35 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_17470 0c5409158b24224f31f9094677cd536a 145 Pfam PF01047 MarR family 39 96 7.3E-13 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_17470 0c5409158b24224f31f9094677cd536a 145 Gene3D G3DSA:1.10.10.10 5 144 1.0E-35 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_22860 2006bc23560d2fbfa76a1db504291ecd 123 Pfam PF13298 DNA polymerase Ligase (LigD) 15 104 1.5E-17 T 13-10-2018 IPR014144 DNA ligase D, 3'-phosphoesterase domain RAM_21905 2d2de708cfd570ea5174ef8a1a550c92 159 Pfam PF01814 Hemerythrin HHE cation binding domain 6 123 2.2E-14 T 13-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 RAM_21905 2d2de708cfd570ea5174ef8a1a550c92 159 Gene3D G3DSA:1.20.120.520 2 145 4.9E-14 T 13-10-2018 RAM_43700 6d7aeabcd023fa8e3a8d68fef8c02204 134 Gene3D G3DSA:1.10.1660.10 2 41 3.7E-8 T 13-10-2018 RAM_43700 6d7aeabcd023fa8e3a8d68fef8c02204 134 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 7 40 1.4E-8 T 13-10-2018 IPR010093 SinI-like, DNA-binding domain GO:0003677 RAM_43700 6d7aeabcd023fa8e3a8d68fef8c02204 134 SUPERFAMILY SSF50331 10 127 7.78E-17 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal RAM_43700 6d7aeabcd023fa8e3a8d68fef8c02204 134 Pfam PF12728 Helix-turn-helix domain 6 39 7.6E-8 T 13-10-2018 RAM_43700 6d7aeabcd023fa8e3a8d68fef8c02204 134 Gene3D G3DSA:2.40.50.100 65 128 1.6E-16 T 13-10-2018 RAM_43700 6d7aeabcd023fa8e3a8d68fef8c02204 134 Pfam PF03459 TOBE domain 66 125 2.2E-9 T 13-10-2018 IPR005116 Transport-associated OB, type 1 RAM_40070 31ee8905c6d5fece9dc9624d130e6e68 306 SUPERFAMILY SSF161111 19 217 1.7E-49 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily RAM_40070 31ee8905c6d5fece9dc9624d130e6e68 306 Gene3D G3DSA:1.20.1510.10 21 216 9.3E-37 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily RAM_40070 31ee8905c6d5fece9dc9624d130e6e68 306 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 22 294 1.7E-74 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RAM_40070 31ee8905c6d5fece9dc9624d130e6e68 306 Pfam PF01545 Cation efflux family 26 215 1.2E-39 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RAM_40070 31ee8905c6d5fece9dc9624d130e6e68 306 SUPERFAMILY SSF160240 222 293 1.31E-7 T 13-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 RAM_11440 8662270518e0d07b184849c7886d1785 346 Pfam PF11203 Putative type VII ESX secretion system translocon, EccE 180 271 2.0E-16 T 13-10-2018 IPR021368 Type VII secretion system protein EccE RAM_38250 06c2d132cb95a9420962c64d2c9affbb 284 SUPERFAMILY SSF51679 1 281 2.36E-55 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_38250 06c2d132cb95a9420962c64d2c9affbb 284 Pfam PF00296 Luciferase-like monooxygenase 10 238 3.5E-38 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_38250 06c2d132cb95a9420962c64d2c9affbb 284 Gene3D G3DSA:3.20.20.30 1 284 1.6E-57 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_30855 37557276f7c9bd4178e51a4d93645dac 473 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 28 457 1.4E-91 T 13-10-2018 IPR001248 Purine-cytosine permease GO:0016020|GO:0022857|GO:0055085 RAM_30855 37557276f7c9bd4178e51a4d93645dac 473 Gene3D G3DSA:1.10.4160.10 11 471 4.6E-112 T 13-10-2018 IPR038271 Purine-cytosine permease superfamily RAM_02885 abc7e2cd26326fe84605c3560858b1a6 314 Gene3D G3DSA:3.90.550.10 1 235 3.8E-47 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_02885 abc7e2cd26326fe84605c3560858b1a6 314 Pfam PF00535 Glycosyl transferase family 2 11 134 9.3E-28 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RAM_02885 abc7e2cd26326fe84605c3560858b1a6 314 SUPERFAMILY SSF53448 5 219 5.91E-45 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_13875 c9e50df06edf37ed4a1c38827c744428 145 SUPERFAMILY SSF50022 50 143 3.01E-27 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RAM_13875 c9e50df06edf37ed4a1c38827c744428 145 Pfam PF00355 Rieske [2Fe-2S] domain 56 134 2.9E-15 T 13-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RAM_13875 c9e50df06edf37ed4a1c38827c744428 145 Gene3D G3DSA:2.102.10.10 31 145 1.4E-26 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RAM_13875 c9e50df06edf37ed4a1c38827c744428 145 PRINTS PR00162 Rieske 2Fe-2S subunit signature 105 117 1.2E-8 T 13-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 RAM_13875 c9e50df06edf37ed4a1c38827c744428 145 PRINTS PR00162 Rieske 2Fe-2S subunit signature 86 97 1.2E-8 T 13-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 RAM_13875 c9e50df06edf37ed4a1c38827c744428 145 PRINTS PR00162 Rieske 2Fe-2S subunit signature 118 130 1.2E-8 T 13-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 RAM_07815 a6bd350c4a0b69f74dcb0b2b44b83ce4 335 Gene3D G3DSA:2.40.10.240 63 165 1.8E-59 T 13-10-2018 RAM_07815 a6bd350c4a0b69f74dcb0b2b44b83ce4 335 Gene3D G3DSA:3.40.1780.10 23 331 1.8E-59 T 13-10-2018 RAM_07815 a6bd350c4a0b69f74dcb0b2b44b83ce4 335 SUPERFAMILY SSF111337 4 333 3.53E-75 T 13-10-2018 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 RAM_07815 a6bd350c4a0b69f74dcb0b2b44b83ce4 335 Pfam PF02547 Queuosine biosynthesis protein 4 332 2.7E-75 T 13-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 RAM_40105 945470d86a20c7be2ec354cd5646a775 179 SUPERFAMILY SSF109854 2 123 1.42E-13 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_40105 945470d86a20c7be2ec354cd5646a775 179 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 2 174 8.9E-22 T 13-10-2018 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type RAM_40105 945470d86a20c7be2ec354cd5646a775 179 TIGRFAM TIGR03086 TIGR03086: TIGR03086 family protein 1 174 5.8E-41 T 13-10-2018 IPR017520 Conserved hypothetical protein CHP03086 RAM_40105 945470d86a20c7be2ec354cd5646a775 179 Pfam PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain 2 118 1.5E-10 T 13-10-2018 IPR024344 Mycothiol-dependent maleylpyruvate isomerase, metal-binding domain GO:0046872 RAM_40105 945470d86a20c7be2ec354cd5646a775 179 Gene3D G3DSA:1.20.120.450 1 122 2.8E-10 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_09580 8be8e16202d95b9a4f0941aab16b9b0f 292 Pfam PF01261 Xylose isomerase-like TIM barrel 34 239 3.6E-26 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain RAM_09580 8be8e16202d95b9a4f0941aab16b9b0f 292 SUPERFAMILY SSF51658 26 287 1.08E-49 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily RAM_09580 8be8e16202d95b9a4f0941aab16b9b0f 292 Gene3D G3DSA:3.20.20.150 1 288 1.0E-69 T 13-10-2018 RAM_15740 c882d4e1b0c0eadd006160d3f71f32be 139 Gene3D G3DSA:3.10.450.50 9 136 4.2E-29 T 13-10-2018 RAM_15740 c882d4e1b0c0eadd006160d3f71f32be 139 SUPERFAMILY SSF54427 1 134 5.08E-26 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_15740 c882d4e1b0c0eadd006160d3f71f32be 139 Pfam PF12680 SnoaL-like domain 15 117 5.0E-19 T 13-10-2018 IPR037401 SnoaL-like domain RAM_18535 a2ce078445a04fdf2066dcaa0b008f46 210 Gene3D G3DSA:1.10.357.10 9 208 3.2E-60 T 13-10-2018 RAM_18535 a2ce078445a04fdf2066dcaa0b008f46 210 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 1.0E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_18535 a2ce078445a04fdf2066dcaa0b008f46 210 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 1.0E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_18535 a2ce078445a04fdf2066dcaa0b008f46 210 SUPERFAMILY SSF46689 3 87 8.72E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_18535 a2ce078445a04fdf2066dcaa0b008f46 210 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 64 2.2E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_36340 34346ec5d4c0023b433e509da328dfa2 428 Gene3D G3DSA:1.20.1250.20 1 410 9.7E-68 T 13-10-2018 RAM_36340 34346ec5d4c0023b433e509da328dfa2 428 SUPERFAMILY SSF103473 1 406 3.01E-69 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_36340 34346ec5d4c0023b433e509da328dfa2 428 ProSitePatterns PS00217 Sugar transport proteins signature 2. 102 127 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RAM_36340 34346ec5d4c0023b433e509da328dfa2 428 Pfam PF07690 Major Facilitator Superfamily 31 359 1.0E-35 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_04595 c3d2dc757a3bcd4f58f65edb6f8c9e9d 388 SUPERFAMILY SSF51338 2 70 6.82E-10 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_04595 c3d2dc757a3bcd4f58f65edb6f8c9e9d 388 SUPERFAMILY SSF51556 60 351 2.53E-52 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_04595 c3d2dc757a3bcd4f58f65edb6f8c9e9d 388 Gene3D G3DSA:2.30.40.10 15 386 2.6E-82 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_04595 c3d2dc757a3bcd4f58f65edb6f8c9e9d 388 Pfam PF01979 Amidohydrolase family 57 377 2.3E-28 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RAM_04595 c3d2dc757a3bcd4f58f65edb6f8c9e9d 388 Gene3D G3DSA:3.20.20.140 62 350 2.6E-82 T 13-10-2018 RAM_04595 c3d2dc757a3bcd4f58f65edb6f8c9e9d 388 SUPERFAMILY SSF51338 336 386 6.91E-7 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_17275 16c2cfcd50a8bfefb3cd4267c2ecd13e 337 Gene3D G3DSA:3.90.180.10 18 315 1.3E-67 T 13-10-2018 RAM_17275 16c2cfcd50a8bfefb3cd4267c2ecd13e 337 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 140 6.1E-25 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_17275 16c2cfcd50a8bfefb3cd4267c2ecd13e 337 SUPERFAMILY SSF51735 149 293 1.25E-20 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_17275 16c2cfcd50a8bfefb3cd4267c2ecd13e 337 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 67 81 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 RAM_17275 16c2cfcd50a8bfefb3cd4267c2ecd13e 337 Gene3D G3DSA:3.40.50.720 160 281 1.3E-67 T 13-10-2018 RAM_17275 16c2cfcd50a8bfefb3cd4267c2ecd13e 337 SUPERFAMILY SSF50129 3 181 9.28E-43 T 13-10-2018 IPR011032 GroES-like superfamily RAM_00215 7bfa3f9ee5b6fec0cf1d4d2819bd656b 237 Gene3D G3DSA:3.40.50.300 1 237 1.9E-66 T 13-10-2018 RAM_00215 7bfa3f9ee5b6fec0cf1d4d2819bd656b 237 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_00215 7bfa3f9ee5b6fec0cf1d4d2819bd656b 237 SMART SM00382 28 214 1.7E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_00215 7bfa3f9ee5b6fec0cf1d4d2819bd656b 237 SUPERFAMILY SSF52540 2 220 3.85E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_00215 7bfa3f9ee5b6fec0cf1d4d2819bd656b 237 Pfam PF00005 ABC transporter 20 157 1.1E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_04215 a26f37ec140f5e560ee76d87870b51e9 144 Gene3D G3DSA:3.40.1280.10 9 143 8.8E-28 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RAM_04215 a26f37ec140f5e560ee76d87870b51e9 144 Pfam PF00588 SpoU rRNA Methylase family 11 138 9.5E-21 T 13-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 RAM_04215 a26f37ec140f5e560ee76d87870b51e9 144 SUPERFAMILY SSF75217 8 140 1.5E-24 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases RAM_39080 a30c4574f3bf5e3b13eb96b942f92b6d 454 Gene3D G3DSA:1.10.10.2840 322 451 5.1E-18 T 13-10-2018 RAM_39080 a30c4574f3bf5e3b13eb96b942f92b6d 454 Pfam PF13556 PucR C-terminal helix-turn-helix domain 392 448 1.5E-15 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain RAM_17610 bd654cd8136c036370f50ad4392a46ba 527 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 77 411 5.2E-49 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain RAM_17610 bd654cd8136c036370f50ad4392a46ba 527 PIRSF PIRSF002741 2 525 3.2E-51 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RAM_17610 bd654cd8136c036370f50ad4392a46ba 527 Gene3D G3DSA:3.10.105.10 278 495 3.0E-32 T 13-10-2018 RAM_17610 bd654cd8136c036370f50ad4392a46ba 527 SUPERFAMILY SSF53850 32 512 2.71E-75 T 13-10-2018 RAM_17610 bd654cd8136c036370f50ad4392a46ba 527 Gene3D G3DSA:3.40.190.10 25 274 8.8E-43 T 13-10-2018 RAM_33185 f19a37f971844ba504b625f9360fda6b 304 Pfam PF00561 alpha/beta hydrolase fold 33 130 2.1E-19 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_33185 f19a37f971844ba504b625f9360fda6b 304 SUPERFAMILY SSF53474 10 296 2.54E-63 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_33185 f19a37f971844ba504b625f9360fda6b 304 Gene3D G3DSA:3.40.50.1820 12 296 2.0E-79 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_33185 f19a37f971844ba504b625f9360fda6b 304 PRINTS PR00412 Epoxide hydrolase signature 38 56 2.3E-8 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_33185 f19a37f971844ba504b625f9360fda6b 304 PRINTS PR00412 Epoxide hydrolase signature 272 294 2.3E-8 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_33185 f19a37f971844ba504b625f9360fda6b 304 PRINTS PR00412 Epoxide hydrolase signature 101 114 2.3E-8 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_15075 8fa300dcffcd4e03a032627d578be38b 527 Gene3D G3DSA:3.40.710.10 236 527 4.6E-54 T 13-10-2018 RAM_15075 8fa300dcffcd4e03a032627d578be38b 527 SUPERFAMILY SSF56601 237 525 3.0E-52 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_15075 8fa300dcffcd4e03a032627d578be38b 527 Pfam PF00905 Penicillin binding protein transpeptidase domain 256 521 1.1E-33 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RAM_15075 8fa300dcffcd4e03a032627d578be38b 527 Pfam PF05223 NTF2-like N-terminal transpeptidase domain 38 148 1.2E-9 T 13-10-2018 IPR007887 NTF2-like N-terminal transpeptidase GO:0046677 RAM_09225 1ca532b55cf2852c843dbf0267caf45e 455 SUPERFAMILY SSF143548 17 155 1.94E-46 T 13-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 RAM_09225 1ca532b55cf2852c843dbf0267caf45e 455 Gene3D G3DSA:3.30.1330.90 11 158 4.0E-54 T 13-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 RAM_09225 1ca532b55cf2852c843dbf0267caf45e 455 Pfam PF03315 Serine dehydratase beta chain 4 154 1.2E-58 T 13-10-2018 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 RAM_09225 1ca532b55cf2852c843dbf0267caf45e 455 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 3 452 5.1E-206 T 13-10-2018 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 RAM_09225 1ca532b55cf2852c843dbf0267caf45e 455 Pfam PF03313 Serine dehydratase alpha chain 186 449 9.1E-102 T 13-10-2018 IPR005130 Serine dehydratase-like, alpha subunit RAM_06945 99927b3eeb2880ede9463ab5adf3bc24 543 Pfam PF03609 PTS system sorbose-specific iic component 2 237 1.4E-54 T 13-10-2018 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit GO:0009401|GO:0016021 RAM_06945 99927b3eeb2880ede9463ab5adf3bc24 543 Pfam PF03613 PTS system mannose/fructose/sorbose family IID component 269 535 3.0E-74 T 13-10-2018 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component GO:0009401|GO:0016021 RAM_41780 47295f563c300d818f25bbb4ad915774 337 SUPERFAMILY SSF53955 134 337 2.59E-66 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily RAM_41780 47295f563c300d818f25bbb4ad915774 337 SMART SM00495 21 65 1.4 T 13-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 RAM_41780 47295f563c300d818f25bbb4ad915774 337 SMART SM00495 76 120 1.3 T 13-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 RAM_41780 47295f563c300d818f25bbb4ad915774 337 Gene3D G3DSA:2.10.10.20 75 122 5.4E-6 T 13-10-2018 RAM_41780 47295f563c300d818f25bbb4ad915774 337 Gene3D G3DSA:2.10.10.20 20 67 1.7E-5 T 13-10-2018 RAM_41780 47295f563c300d818f25bbb4ad915774 337 Gene3D G3DSA:1.10.530.10 131 202 3.1E-20 T 13-10-2018 RAM_41780 47295f563c300d818f25bbb4ad915774 337 Gene3D G3DSA:1.10.530.10 255 337 1.2E-30 T 13-10-2018 RAM_41780 47295f563c300d818f25bbb4ad915774 337 PIRSF PIRSF001060 12 337 9.6E-79 T 13-10-2018 IPR016283 Glycoside hydrolase, family 19 GO:0004568|GO:0005975 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 RAM_41780 47295f563c300d818f25bbb4ad915774 337 Gene3D G3DSA:3.30.20.10 203 254 5.5E-29 T 13-10-2018 RAM_41780 47295f563c300d818f25bbb4ad915774 337 Pfam PF00182 Chitinase class I 136 337 5.8E-41 T 13-10-2018 IPR000726 Glycoside hydrolase, family 19, catalytic GO:0004568|GO:0006032|GO:0016998 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 RAM_12185 6356bf55b9c3a9909d81fc8a17d7ed6e 446 Gene3D G3DSA:1.25.40.10 201 376 1.3E-12 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_12185 6356bf55b9c3a9909d81fc8a17d7ed6e 446 SUPERFAMILY SSF48452 227 343 7.59E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_15085 cff7d70a66ef35f1169e9e71a7ee533f 492 Gene3D G3DSA:3.30.70.1450 397 474 2.0E-11 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RAM_15085 cff7d70a66ef35f1169e9e71a7ee533f 492 Pfam PF00999 Sodium/hydrogen exchanger family 14 380 1.8E-48 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 RAM_15085 cff7d70a66ef35f1169e9e71a7ee533f 492 SUPERFAMILY SSF116726 400 470 1.23E-9 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RAM_15085 cff7d70a66ef35f1169e9e71a7ee533f 492 Gene3D G3DSA:1.20.1530.20 8 387 1.2E-21 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily RAM_15085 cff7d70a66ef35f1169e9e71a7ee533f 492 Pfam PF02080 TrkA-C domain 408 471 1.5E-8 T 13-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RAM_19340 023cb420972c72ce9fcfc66ac32fcb85 206 Pfam PF13580 SIS domain 26 149 1.6E-16 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 RAM_19340 023cb420972c72ce9fcfc66ac32fcb85 206 SUPERFAMILY SSF53697 29 192 5.56E-34 T 13-10-2018 RAM_19340 023cb420972c72ce9fcfc66ac32fcb85 206 Gene3D G3DSA:3.40.50.10490 11 196 6.6E-53 T 13-10-2018 RAM_31720 3c5bc7c360602d19550fa84702d9c274 402 SUPERFAMILY SSF51905 5 307 2.23E-30 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_31720 3c5bc7c360602d19550fa84702d9c274 402 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 5.6E-9 T 13-10-2018 RAM_31720 3c5bc7c360602d19550fa84702d9c274 402 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 95 113 5.6E-9 T 13-10-2018 RAM_31720 3c5bc7c360602d19550fa84702d9c274 402 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 142 160 5.6E-9 T 13-10-2018 RAM_31720 3c5bc7c360602d19550fa84702d9c274 402 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 274 7.5E-37 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAM_31720 3c5bc7c360602d19550fa84702d9c274 402 Gene3D G3DSA:3.50.50.100 3 360 3.3E-68 T 13-10-2018 RAM_45995 48d689647e9eb0832a96449d9a7d6f2c 155 PIRSF PIRSF008757 1 155 5.7E-55 T 13-10-2018 IPR010371 Uncharacterised protein family UPF0303 RAM_45995 48d689647e9eb0832a96449d9a7d6f2c 155 Gene3D G3DSA:3.30.450.150 1 155 3.4E-53 T 13-10-2018 IPR038084 GlcG-like domain superfamily RAM_45995 48d689647e9eb0832a96449d9a7d6f2c 155 SUPERFAMILY SSF143744 13 152 6.8E-24 T 13-10-2018 IPR038084 GlcG-like domain superfamily RAM_45995 48d689647e9eb0832a96449d9a7d6f2c 155 Hamap MF_00761 UPF0303 protein . 3 155 31.613 T 13-10-2018 IPR010371 Uncharacterised protein family UPF0303 RAM_45995 48d689647e9eb0832a96449d9a7d6f2c 155 Pfam PF03928 Haem-degrading 22 149 2.3E-29 T 13-10-2018 IPR005624 Haem-degrading RAM_20940 8deb03451057ba94a345f551462e9cdc 541 Gene3D G3DSA:3.50.50.60 11 536 2.5E-159 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_20940 8deb03451057ba94a345f551462e9cdc 541 Pfam PF00732 GMC oxidoreductase 12 302 6.9E-75 T 13-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 RAM_20940 8deb03451057ba94a345f551462e9cdc 541 SUPERFAMILY SSF51905 9 539 6.24E-77 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_20940 8deb03451057ba94a345f551462e9cdc 541 Gene3D G3DSA:4.10.450.10 43 206 2.5E-159 T 13-10-2018 IPR027424 Glucose Oxidase, domain 2 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|Reactome: R-HSA-6798163 RAM_20940 8deb03451057ba94a345f551462e9cdc 541 Gene3D G3DSA:3.30.410.40 160 479 2.5E-159 T 13-10-2018 RAM_20940 8deb03451057ba94a345f551462e9cdc 541 Pfam PF05199 GMC oxidoreductase 397 530 5.0E-37 T 13-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 RAM_20940 8deb03451057ba94a345f551462e9cdc 541 Gene3D G3DSA:1.10.1220.110 106 159 2.5E-159 T 13-10-2018 RAM_20940 8deb03451057ba94a345f551462e9cdc 541 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 91 114 - T 13-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 RAM_20940 8deb03451057ba94a345f551462e9cdc 541 SUPERFAMILY SSF54373 297 482 8.73E-43 T 13-10-2018 RAM_20940 8deb03451057ba94a345f551462e9cdc 541 PIRSF PIRSF000137 1 541 1.8E-129 T 13-10-2018 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 RAM_13815 9b616ce7c4a45f6d9439e5b3ece60abe 426 SUPERFAMILY SSF53335 188 385 2.92E-41 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_13815 9b616ce7c4a45f6d9439e5b3ece60abe 426 SUPERFAMILY SSF81301 29 187 1.37E-47 T 13-10-2018 RAM_13815 9b616ce7c4a45f6d9439e5b3ece60abe 426 Gene3D G3DSA:3.40.50.150 208 411 2.6E-47 T 13-10-2018 RAM_13815 9b616ce7c4a45f6d9439e5b3ece60abe 426 Pfam PF08241 Methyltransferase domain 229 322 5.8E-23 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 RAM_13815 9b616ce7c4a45f6d9439e5b3ece60abe 426 Gene3D G3DSA:3.30.460.10 23 192 2.7E-49 T 13-10-2018 RAM_13815 9b616ce7c4a45f6d9439e5b3ece60abe 426 Pfam PF04229 GrpB protein 27 184 5.0E-50 T 13-10-2018 IPR007344 GrpB/Dephospho-CoA kinase RAM_22110 69cad8ac017d5b11947d581503739f65 315 Pfam PF13576 Pentapeptide repeats (9 copies) 146 194 1.5E-8 T 13-10-2018 IPR001646 Pentapeptide repeat RAM_22110 69cad8ac017d5b11947d581503739f65 315 Gene3D G3DSA:2.160.20.80 121 292 1.5E-7 T 13-10-2018 RAM_43430 eeae4a3fc8e0ab772463f2f951af76ed 374 Pfam PF00266 Aminotransferase class-V 141 332 4.7E-12 T 13-10-2018 IPR000192 Aminotransferase class V domain RAM_43430 eeae4a3fc8e0ab772463f2f951af76ed 374 TIGRFAM TIGR01366 serC_3: putative phosphoserine aminotransferase 13 373 1.3E-194 T 13-10-2018 IPR006272 Phosphoserine aminotransferase, Mycobacterial-type GO:0004648|GO:0006564|GO:0009058 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52 RAM_43430 eeae4a3fc8e0ab772463f2f951af76ed 374 Gene3D G3DSA:3.40.640.10 29 266 7.4E-56 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_43430 eeae4a3fc8e0ab772463f2f951af76ed 374 Hamap MF_00160 Phosphoserine aminotransferase [serC]. 7 373 24.215 T 13-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 RAM_43430 eeae4a3fc8e0ab772463f2f951af76ed 374 Gene3D G3DSA:3.90.1150.10 269 373 2.2E-40 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_43430 eeae4a3fc8e0ab772463f2f951af76ed 374 PIRSF PIRSF000525 4 374 9.4E-77 T 13-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 RAM_43430 eeae4a3fc8e0ab772463f2f951af76ed 374 SUPERFAMILY SSF53383 14 372 5.39E-75 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_46550 1aabf302df0ff1ffff28187dd0751567 192 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 125 141 2.6E-8 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_46550 1aabf302df0ff1ffff28187dd0751567 192 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 95 108 2.6E-8 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_46550 1aabf302df0ff1ffff28187dd0751567 192 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 1 12 2.6E-8 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_46550 1aabf302df0ff1ffff28187dd0751567 192 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 143 163 2.6E-8 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_46550 1aabf302df0ff1ffff28187dd0751567 192 Pfam PF13419 Haloacid dehalogenase-like hydrolase 89 178 4.8E-9 T 13-10-2018 RAM_46550 1aabf302df0ff1ffff28187dd0751567 192 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 52 178 1.5E-13 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_46550 1aabf302df0ff1ffff28187dd0751567 192 Gene3D G3DSA:3.40.50.1000 1 192 3.0E-30 T 13-10-2018 IPR023214 HAD superfamily RAM_46550 1aabf302df0ff1ffff28187dd0751567 192 SUPERFAMILY SSF56784 2 187 6.16E-30 T 13-10-2018 IPR036412 HAD-like superfamily RAM_27900 80f5846b044610130f70b364112b15fc 196 ProSitePatterns PS00622 LuxR-type HTH domain signature. 148 175 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_27900 80f5846b044610130f70b364112b15fc 196 SMART SM00421 131 188 2.1E-22 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_27900 80f5846b044610130f70b364112b15fc 196 SUPERFAMILY SSF52172 4 154 5.41E-23 T 13-10-2018 IPR011006 CheY-like superfamily RAM_27900 80f5846b044610130f70b364112b15fc 196 Pfam PF00072 Response regulator receiver domain 3 99 1.7E-19 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_27900 80f5846b044610130f70b364112b15fc 196 Gene3D G3DSA:3.40.50.12740 1 192 2.8E-52 T 13-10-2018 RAM_27900 80f5846b044610130f70b364112b15fc 196 SMART SM00448 1 99 3.4E-11 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_27900 80f5846b044610130f70b364112b15fc 196 Pfam PF00196 Bacterial regulatory proteins, luxR family 134 188 4.3E-16 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_27900 80f5846b044610130f70b364112b15fc 196 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 148 164 1.5E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_27900 80f5846b044610130f70b364112b15fc 196 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 134 148 1.5E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_27900 80f5846b044610130f70b364112b15fc 196 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 176 1.5E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_32345 d600d148529798f645053e34116a11b3 307 Pfam PF13349 Putative adhesin 187 276 3.3E-7 T 13-10-2018 IPR025164 Putative adhesin RAM_07770 370276cb51afadf60e2777d603c12d26 493 Gene3D G3DSA:2.160.20.10 21 396 3.1E-77 T 13-10-2018 IPR012334 Pectin lyase fold RAM_07770 370276cb51afadf60e2777d603c12d26 493 SUPERFAMILY SSF51126 22 379 5.46E-55 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor RAM_07770 370276cb51afadf60e2777d603c12d26 493 Pfam PF00295 Glycosyl hydrolases family 28 78 385 1.3E-22 T 13-10-2018 IPR000743 Glycoside hydrolase, family 28 GO:0004650|GO:0005975 RAM_00140 4e161f356ec103ffa2ec49af196ae3a9 406 Pfam PF00067 Cytochrome P450 222 373 1.1E-24 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_00140 4e161f356ec103ffa2ec49af196ae3a9 406 Gene3D G3DSA:1.10.630.10 13 406 8.0E-123 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_00140 4e161f356ec103ffa2ec49af196ae3a9 406 PRINTS PR00359 B-class P450 signature 162 177 4.8E-60 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_00140 4e161f356ec103ffa2ec49af196ae3a9 406 PRINTS PR00359 B-class P450 signature 98 109 4.8E-60 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_00140 4e161f356ec103ffa2ec49af196ae3a9 406 PRINTS PR00359 B-class P450 signature 145 161 4.8E-60 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_00140 4e161f356ec103ffa2ec49af196ae3a9 406 PRINTS PR00359 B-class P450 signature 199 221 4.8E-60 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_00140 4e161f356ec103ffa2ec49af196ae3a9 406 PRINTS PR00359 B-class P450 signature 321 336 4.8E-60 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_00140 4e161f356ec103ffa2ec49af196ae3a9 406 PRINTS PR00359 B-class P450 signature 293 320 4.8E-60 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_00140 4e161f356ec103ffa2ec49af196ae3a9 406 PRINTS PR00359 B-class P450 signature 276 287 4.8E-60 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_00140 4e161f356ec103ffa2ec49af196ae3a9 406 PRINTS PR00359 B-class P450 signature 342 351 4.8E-60 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_00140 4e161f356ec103ffa2ec49af196ae3a9 406 PRINTS PR00359 B-class P450 signature 351 362 4.8E-60 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_00140 4e161f356ec103ffa2ec49af196ae3a9 406 SUPERFAMILY SSF48264 17 403 1.7E-96 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_00140 4e161f356ec103ffa2ec49af196ae3a9 406 PRINTS PR00385 P450 superfamily signature 351 362 2.1E-8 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_00140 4e161f356ec103ffa2ec49af196ae3a9 406 PRINTS PR00385 P450 superfamily signature 276 287 2.1E-8 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_00140 4e161f356ec103ffa2ec49af196ae3a9 406 PRINTS PR00385 P450 superfamily signature 342 351 2.1E-8 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_00140 4e161f356ec103ffa2ec49af196ae3a9 406 PRINTS PR00385 P450 superfamily signature 241 258 2.1E-8 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_00140 4e161f356ec103ffa2ec49af196ae3a9 406 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 344 353 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RAM_01340 8044a8e50069ec246c4340a5ee14f205 157 Pfam PF01037 Lrp/AsnC ligand binding domain 72 145 9.4E-18 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RAM_01340 8044a8e50069ec246c4340a5ee14f205 157 Gene3D G3DSA:1.10.10.10 2 59 2.0E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_01340 8044a8e50069ec246c4340a5ee14f205 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 6 22 2.7E-12 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_01340 8044a8e50069ec246c4340a5ee14f205 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 33 52 2.7E-12 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_01340 8044a8e50069ec246c4340a5ee14f205 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 22 33 2.7E-12 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_01340 8044a8e50069ec246c4340a5ee14f205 157 Gene3D G3DSA:3.30.70.920 60 143 3.2E-20 T 13-10-2018 RAM_01340 8044a8e50069ec246c4340a5ee14f205 157 SMART SM00344 6 115 1.7E-33 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RAM_01340 8044a8e50069ec246c4340a5ee14f205 157 SUPERFAMILY SSF54909 66 155 6.7E-17 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_01340 8044a8e50069ec246c4340a5ee14f205 157 Pfam PF13404 AsnC-type helix-turn-helix domain 6 47 1.9E-14 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_01340 8044a8e50069ec246c4340a5ee14f205 157 SUPERFAMILY SSF46785 6 65 2.32E-14 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_31890 d56f66e8c37383e670e1b57d4e50d5e9 311 Gene3D G3DSA:3.40.50.880 1 198 7.1E-49 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_31890 d56f66e8c37383e670e1b57d4e50d5e9 311 Pfam PF01965 DJ-1/PfpI family 3 165 2.9E-16 T 13-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 RAM_31890 d56f66e8c37383e670e1b57d4e50d5e9 311 SUPERFAMILY SSF46689 257 306 1.79E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_31890 d56f66e8c37383e670e1b57d4e50d5e9 311 Pfam PF12833 Helix-turn-helix domain 227 304 3.8E-20 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_31890 d56f66e8c37383e670e1b57d4e50d5e9 311 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 257 299 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RAM_31890 d56f66e8c37383e670e1b57d4e50d5e9 311 SUPERFAMILY SSF52317 2 185 5.63E-40 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_31890 d56f66e8c37383e670e1b57d4e50d5e9 311 Gene3D G3DSA:1.10.10.60 203 307 1.7E-26 T 13-10-2018 RAM_31890 d56f66e8c37383e670e1b57d4e50d5e9 311 SUPERFAMILY SSF46689 203 254 4.28E-9 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_31890 d56f66e8c37383e670e1b57d4e50d5e9 311 SMART SM00342 220 303 1.3E-25 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_45855 0642a38c5fd5aefc72bb7c137c0fe0ba 222 Pfam PF03734 L,D-transpeptidase catalytic domain 116 220 1.5E-8 T 13-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 RAM_45855 0642a38c5fd5aefc72bb7c137c0fe0ba 222 Gene3D G3DSA:2.40.440.10 108 220 2.9E-17 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like RAM_45855 0642a38c5fd5aefc72bb7c137c0fe0ba 222 SUPERFAMILY SSF141523 112 220 1.83E-18 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like RAM_00590 b23450fcb69c2b72bcf9687b07353e12 304 Gene3D G3DSA:3.40.50.150 12 178 1.3E-16 T 13-10-2018 RAM_00590 b23450fcb69c2b72bcf9687b07353e12 304 SUPERFAMILY SSF53335 23 193 1.16E-20 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_00590 b23450fcb69c2b72bcf9687b07353e12 304 Pfam PF05050 Methyltransferase FkbM domain 29 188 5.8E-21 T 13-10-2018 IPR006342 Methyltransferase FkbM RAM_00590 b23450fcb69c2b72bcf9687b07353e12 304 TIGRFAM TIGR01444 fkbM_fam: methyltransferase, FkbM family 25 161 4.3E-19 T 13-10-2018 IPR006342 Methyltransferase FkbM RAM_44515 d6a8136104ce273f502a8cd1e71970e1 197 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 26 185 2.0E-22 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_44515 d6a8136104ce273f502a8cd1e71970e1 197 Gene3D G3DSA:1.10.10.10 106 190 1.3E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_44515 d6a8136104ce273f502a8cd1e71970e1 197 Pfam PF08281 Sigma-70, region 4 132 183 7.8E-12 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_44515 d6a8136104ce273f502a8cd1e71970e1 197 Pfam PF04542 Sigma-70 region 2 30 97 1.9E-13 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_44515 d6a8136104ce273f502a8cd1e71970e1 197 SUPERFAMILY SSF88946 26 98 3.73E-16 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_44515 d6a8136104ce273f502a8cd1e71970e1 197 SUPERFAMILY SSF88659 123 185 4.58E-13 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_44515 d6a8136104ce273f502a8cd1e71970e1 197 Gene3D G3DSA:1.10.1740.10 22 93 2.8E-14 T 13-10-2018 RAM_32475 6c6fa98a110b0f5511832439de5f4158 205 Pfam PF13649 Methyltransferase domain 47 137 5.8E-20 T 13-10-2018 RAM_32475 6c6fa98a110b0f5511832439de5f4158 205 SUPERFAMILY SSF53335 9 192 5.17E-36 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_32475 6c6fa98a110b0f5511832439de5f4158 205 Gene3D G3DSA:3.40.50.150 5 197 1.1E-50 T 13-10-2018 RAM_36060 ae62a40ffaf13e2c67d45481bfa36b5f 279 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 253 275 1.8E-11 T 13-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RAM_36060 ae62a40ffaf13e2c67d45481bfa36b5f 279 SMART SM00382 52 253 1.7E-5 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_36060 ae62a40ffaf13e2c67d45481bfa36b5f 279 Pfam PF00005 ABC transporter 43 203 2.0E-24 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_36060 ae62a40ffaf13e2c67d45481bfa36b5f 279 SUPERFAMILY SSF52540 28 275 4.8E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_36060 ae62a40ffaf13e2c67d45481bfa36b5f 279 Gene3D G3DSA:3.40.50.300 28 278 1.2E-55 T 13-10-2018 RAM_13605 936f4a31af01cb5efb2ce591cbf572fd 184 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 18 179 6.2E-30 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_13605 936f4a31af01cb5efb2ce591cbf572fd 184 SUPERFAMILY SSF88659 118 181 9.53E-15 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_13605 936f4a31af01cb5efb2ce591cbf572fd 184 Gene3D G3DSA:1.10.10.10 120 183 6.1E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_13605 936f4a31af01cb5efb2ce591cbf572fd 184 SUPERFAMILY SSF88946 3 102 9.89E-31 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_13605 936f4a31af01cb5efb2ce591cbf572fd 184 Pfam PF08281 Sigma-70, region 4 126 177 6.6E-14 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_13605 936f4a31af01cb5efb2ce591cbf572fd 184 Gene3D G3DSA:1.10.1740.10 1 109 2.7E-32 T 13-10-2018 RAM_13605 936f4a31af01cb5efb2ce591cbf572fd 184 Pfam PF04542 Sigma-70 region 2 22 88 2.9E-20 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_33975 9d26cb80af843368119a6fb63788c1ed 112 SUPERFAMILY SSF53927 7 77 4.14E-8 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 RAM_33975 9d26cb80af843368119a6fb63788c1ed 112 Gene3D G3DSA:3.40.140.10 3 111 4.2E-8 T 13-10-2018 RAM_43240 73b6906b469fdc115cdd5993ad3b36cc 308 Pfam PF00005 ABC transporter 21 161 2.0E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_43240 73b6906b469fdc115cdd5993ad3b36cc 308 SUPERFAMILY SSF52540 5 222 6.99E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_43240 73b6906b469fdc115cdd5993ad3b36cc 308 SMART SM00382 30 209 2.7E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_43240 73b6906b469fdc115cdd5993ad3b36cc 308 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_43240 73b6906b469fdc115cdd5993ad3b36cc 308 Pfam PF13732 Domain of unknown function (DUF4162) 215 297 5.5E-7 T 13-10-2018 IPR025302 Domain of unknown function DUF4162 RAM_43240 73b6906b469fdc115cdd5993ad3b36cc 308 Gene3D G3DSA:3.40.50.300 1 232 2.1E-65 T 13-10-2018 RAM_25885 2c1a9d809fc50e96791dafba59a763f3 539 Gene3D G3DSA:1.20.1250.20 258 444 2.7E-10 T 13-10-2018 RAM_25885 2c1a9d809fc50e96791dafba59a763f3 539 Gene3D G3DSA:1.20.1250.20 1 252 1.1E-23 T 13-10-2018 RAM_25885 2c1a9d809fc50e96791dafba59a763f3 539 Pfam PF07690 Major Facilitator Superfamily 3 406 6.7E-29 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_25885 2c1a9d809fc50e96791dafba59a763f3 539 SUPERFAMILY SSF103473 3 527 2.44E-44 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_42435 10ece54ea9716a24eaa1049f14a4da23 599 SUPERFAMILY SSF56112 318 565 9.17E-62 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_42435 10ece54ea9716a24eaa1049f14a4da23 599 SMART SM00220 320 573 1.6E-46 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_42435 10ece54ea9716a24eaa1049f14a4da23 599 Pfam PF00069 Protein kinase domain 320 565 1.2E-43 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_42435 10ece54ea9716a24eaa1049f14a4da23 599 Gene3D G3DSA:1.10.510.10 399 582 6.5E-35 T 13-10-2018 RAM_42435 10ece54ea9716a24eaa1049f14a4da23 599 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 326 349 - T 13-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 RAM_42435 10ece54ea9716a24eaa1049f14a4da23 599 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 436 448 - T 13-10-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 RAM_42435 10ece54ea9716a24eaa1049f14a4da23 599 Gene3D G3DSA:3.30.200.20 301 398 1.3E-23 T 13-10-2018 RAM_34040 eb806ebf4c733993f2cbea22acd46ca5 283 SUPERFAMILY SSF51430 10 282 4.19E-80 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_34040 eb806ebf4c733993f2cbea22acd46ca5 283 Pfam PF00248 Aldo/keto reductase family 19 281 2.1E-63 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain RAM_34040 eb806ebf4c733993f2cbea22acd46ca5 283 PRINTS PR00069 Aldo-keto reductase signature 49 73 4.7E-9 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_34040 eb806ebf4c733993f2cbea22acd46ca5 283 PRINTS PR00069 Aldo-keto reductase signature 216 240 4.7E-9 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_34040 eb806ebf4c733993f2cbea22acd46ca5 283 PRINTS PR00069 Aldo-keto reductase signature 114 132 4.7E-9 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_34040 eb806ebf4c733993f2cbea22acd46ca5 283 PRINTS PR00069 Aldo-keto reductase signature 145 162 4.7E-9 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_34040 eb806ebf4c733993f2cbea22acd46ca5 283 Gene3D G3DSA:3.20.20.100 12 283 3.7E-86 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_45280 bbf17b9f69120436186a42b2c000e42d 364 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 292 308 2.7E-13 T 13-10-2018 RAM_45280 bbf17b9f69120436186a42b2c000e42d 364 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 277 292 2.7E-13 T 13-10-2018 RAM_45280 bbf17b9f69120436186a42b2c000e42d 364 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 3 25 2.7E-13 T 13-10-2018 RAM_45280 bbf17b9f69120436186a42b2c000e42d 364 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 146 161 2.7E-13 T 13-10-2018 RAM_45280 bbf17b9f69120436186a42b2c000e42d 364 Gene3D G3DSA:3.50.50.60 6 336 1.8E-68 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_45280 bbf17b9f69120436186a42b2c000e42d 364 SUPERFAMILY SSF51905 3 342 5.28E-51 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_45280 bbf17b9f69120436186a42b2c000e42d 364 Pfam PF01494 FAD binding domain 3 332 2.6E-21 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_45280 bbf17b9f69120436186a42b2c000e42d 364 Gene3D G3DSA:3.30.9.50 39 267 1.8E-68 T 13-10-2018 RAM_45515 1f5edd26133bc28461ee54b5eea2db27 140 SUPERFAMILY SSF82784 1 137 5.89E-43 T 13-10-2018 IPR036102 OsmC/Ohr superfamily RAM_45515 1f5edd26133bc28461ee54b5eea2db27 140 TIGRFAM TIGR03561 organ_hyd_perox: peroxiredoxin, Ohr subfamily 5 137 1.2E-52 T 13-10-2018 IPR019953 Organic hydroperoxide resistance protein famiy GO:0006979 RAM_45515 1f5edd26133bc28461ee54b5eea2db27 140 Gene3D G3DSA:3.30.300.20 47 138 2.0E-34 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta RAM_45515 1f5edd26133bc28461ee54b5eea2db27 140 Pfam PF02566 OsmC-like protein 42 136 1.5E-19 T 13-10-2018 IPR003718 OsmC/Ohr family RAM_45515 1f5edd26133bc28461ee54b5eea2db27 140 Gene3D G3DSA:2.20.25.10 2 46 4.5E-17 T 13-10-2018 RAM_19690 a91b6796fa49ba0679e8579789f50980 529 Gene3D G3DSA:3.30.300.310 415 515 4.7E-25 T 13-10-2018 RAM_19690 a91b6796fa49ba0679e8579789f50980 529 Pfam PF00501 AMP-binding enzyme 18 419 1.4E-68 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_19690 a91b6796fa49ba0679e8579789f50980 529 Pfam PF13193 AMP-binding enzyme C-terminal domain 428 501 1.9E-19 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_19690 a91b6796fa49ba0679e8579789f50980 529 SUPERFAMILY SSF56801 6 516 6.28E-107 T 13-10-2018 RAM_19690 a91b6796fa49ba0679e8579789f50980 529 Gene3D G3DSA:3.40.50.12780 6 411 2.3E-133 T 13-10-2018 RAM_43780 644e768b1670902322723e406928e22f 259 Pfam PF05331 Protein of unknown function (DUF742) 147 258 3.4E-29 T 13-10-2018 IPR007995 Protein of unknown function DUF742 RAM_21285 fed6fb062a0bf885e01f2ce5b76cdf7a 546 Gene3D G3DSA:3.30.300.30 436 545 2.1E-34 T 13-10-2018 RAM_21285 fed6fb062a0bf885e01f2ce5b76cdf7a 546 SUPERFAMILY SSF56801 24 543 4.19E-99 T 13-10-2018 RAM_21285 fed6fb062a0bf885e01f2ce5b76cdf7a 546 Gene3D G3DSA:3.40.50.12780 12 435 3.7E-130 T 13-10-2018 RAM_21285 fed6fb062a0bf885e01f2ce5b76cdf7a 546 Pfam PF00501 AMP-binding enzyme 41 441 3.0E-71 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_34860 48e66ef26ec7e7f0bbe3fdfbcd0ead27 292 SUPERFAMILY SSF81301 7 105 1.14E-8 T 13-10-2018 RAM_10720 36d66d018db1a5f33c2fb04ae99a3bbe 536 Pfam PF02652 L-lactate permease 14 523 4.6E-139 T 13-10-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 RAM_10720 36d66d018db1a5f33c2fb04ae99a3bbe 536 TIGRFAM TIGR00795 lctP: transporter, lactate permease (LctP) family 13 523 1.9E-135 T 13-10-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 RAM_37395 addc787ba335542693ef86f3c115d183 286 PIRSF PIRSF000105 5 286 2.1E-75 T 13-10-2018 IPR022694 3-hydroxyacyl-CoA dehydrogenase GO:0003857|GO:0006631|GO:0055114|GO:0070403 RAM_37395 addc787ba335542693ef86f3c115d183 286 SUPERFAMILY SSF51735 10 189 7.45E-49 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_37395 addc787ba335542693ef86f3c115d183 286 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 10 187 8.0E-55 T 13-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RAM_37395 addc787ba335542693ef86f3c115d183 286 Gene3D G3DSA:1.10.1040.10 193 286 6.5E-30 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RAM_37395 addc787ba335542693ef86f3c115d183 286 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 190 285 1.8E-25 T 13-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RAM_37395 addc787ba335542693ef86f3c115d183 286 SUPERFAMILY SSF48179 189 285 5.7E-27 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RAM_37395 addc787ba335542693ef86f3c115d183 286 Gene3D G3DSA:3.40.50.720 4 192 1.0E-57 T 13-10-2018 RAM_30255 ab58c08dfbf260edf2c9f5d1798d7b23 282 Gene3D G3DSA:3.40.50.720 1 279 2.9E-52 T 13-10-2018 RAM_30255 ab58c08dfbf260edf2c9f5d1798d7b23 282 Pfam PF00106 short chain dehydrogenase 1 131 1.4E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_30255 ab58c08dfbf260edf2c9f5d1798d7b23 282 SUPERFAMILY SSF51735 1 195 4.69E-34 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_40190 f3ecb1df42131d3b16b8152763da01e7 441 Pfam PF00067 Cytochrome P450 8 420 3.6E-65 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_40190 f3ecb1df42131d3b16b8152763da01e7 441 PRINTS PR00463 E-class P450 group I signature 384 407 9.4E-22 T 13-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_40190 f3ecb1df42131d3b16b8152763da01e7 441 PRINTS PR00463 E-class P450 group I signature 239 256 9.4E-22 T 13-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_40190 f3ecb1df42131d3b16b8152763da01e7 441 PRINTS PR00463 E-class P450 group I signature 374 384 9.4E-22 T 13-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_40190 f3ecb1df42131d3b16b8152763da01e7 441 PRINTS PR00463 E-class P450 group I signature 30 49 9.4E-22 T 13-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_40190 f3ecb1df42131d3b16b8152763da01e7 441 PRINTS PR00463 E-class P450 group I signature 338 362 9.4E-22 T 13-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_40190 f3ecb1df42131d3b16b8152763da01e7 441 PRINTS PR00463 E-class P450 group I signature 259 285 9.4E-22 T 13-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_40190 f3ecb1df42131d3b16b8152763da01e7 441 PRINTS PR00463 E-class P450 group I signature 298 316 9.4E-22 T 13-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_40190 f3ecb1df42131d3b16b8152763da01e7 441 SUPERFAMILY SSF48264 7 423 1.17E-93 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_40190 f3ecb1df42131d3b16b8152763da01e7 441 Gene3D G3DSA:1.10.630.10 3 437 1.1E-113 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_40190 f3ecb1df42131d3b16b8152763da01e7 441 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 377 386 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RAM_40190 f3ecb1df42131d3b16b8152763da01e7 441 PRINTS PR00385 P450 superfamily signature 250 267 5.0E-10 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_40190 f3ecb1df42131d3b16b8152763da01e7 441 PRINTS PR00385 P450 superfamily signature 375 384 5.0E-10 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_40190 f3ecb1df42131d3b16b8152763da01e7 441 PRINTS PR00385 P450 superfamily signature 384 395 5.0E-10 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_40190 f3ecb1df42131d3b16b8152763da01e7 441 PRINTS PR00385 P450 superfamily signature 299 310 5.0E-10 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_05375 5a56112bb4f26031464b67156b9cd751 107 TIGRFAM TIGR03544 DivI1A_domain: DivIVA domain 49 78 1.4E-8 T 13-10-2018 IPR019933 DivIVA domain RAM_01520 49b3d09c99ffd2ec328219da7d1ad9ec 162 Pfam PF12802 MarR family 28 87 1.6E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_01520 49b3d09c99ffd2ec328219da7d1ad9ec 162 Gene3D G3DSA:1.10.287.160 95 161 2.3E-6 T 13-10-2018 RAM_01520 49b3d09c99ffd2ec328219da7d1ad9ec 162 SUPERFAMILY SSF46785 11 148 1.03E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_01520 49b3d09c99ffd2ec328219da7d1ad9ec 162 Gene3D G3DSA:1.10.10.10 2 93 3.2E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_12955 fc0a199d2482ac076c565bebd7a85ea3 257 Pfam PF00561 alpha/beta hydrolase fold 15 129 4.9E-13 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_12955 fc0a199d2482ac076c565bebd7a85ea3 257 SUPERFAMILY SSF53474 3 254 3.21E-32 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_12955 fc0a199d2482ac076c565bebd7a85ea3 257 Gene3D G3DSA:3.40.50.1820 1 254 5.0E-43 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_01235 df0a1b4f720a9bc900efb8316e70f6fa 493 Gene3D G3DSA:3.40.630.10 50 438 3.3E-84 T 13-10-2018 RAM_01235 df0a1b4f720a9bc900efb8316e70f6fa 493 Pfam PF04389 Peptidase family M28 226 442 4.9E-43 T 13-10-2018 IPR007484 Peptidase M28 RAM_01235 df0a1b4f720a9bc900efb8316e70f6fa 493 SUPERFAMILY SSF52025 105 196 9.29E-17 T 13-10-2018 RAM_01235 df0a1b4f720a9bc900efb8316e70f6fa 493 Pfam PF02225 PA domain 116 203 1.2E-16 T 13-10-2018 IPR003137 PA domain RAM_01235 df0a1b4f720a9bc900efb8316e70f6fa 493 Gene3D G3DSA:3.50.30.30 89 218 3.3E-84 T 13-10-2018 RAM_01235 df0a1b4f720a9bc900efb8316e70f6fa 493 SUPERFAMILY SSF53187 23 451 1.45E-62 T 13-10-2018 RAM_38525 282da2cb33d07669774ddc2eae0558ee 224 SMART SM00554 122 221 6.6E-23 T 13-10-2018 IPR000782 FAS1 domain RAM_38525 282da2cb33d07669774ddc2eae0558ee 224 Gene3D G3DSA:2.30.180.10 62 221 2.2E-38 T 13-10-2018 IPR036378 FAS1 domain superfamily RAM_38525 282da2cb33d07669774ddc2eae0558ee 224 SUPERFAMILY SSF82153 84 220 2.49E-29 T 13-10-2018 IPR036378 FAS1 domain superfamily RAM_38525 282da2cb33d07669774ddc2eae0558ee 224 Pfam PF02469 Fasciclin domain 98 220 1.0E-28 T 13-10-2018 IPR000782 FAS1 domain RAM_45710 0eb3c9e3a656ff81a92828e3a148c4cc 185 SMART SM00047 23 183 2.2E-22 T 13-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 RAM_45710 0eb3c9e3a656ff81a92828e3a148c4cc 185 PRINTS PR01002 Flagellar protein FlgJ signature 53 71 1.3E-9 T 13-10-2018 RAM_45710 0eb3c9e3a656ff81a92828e3a148c4cc 185 PRINTS PR01002 Flagellar protein FlgJ signature 160 178 1.3E-9 T 13-10-2018 RAM_45710 0eb3c9e3a656ff81a92828e3a148c4cc 185 PRINTS PR01002 Flagellar protein FlgJ signature 118 139 1.3E-9 T 13-10-2018 RAM_45710 0eb3c9e3a656ff81a92828e3a148c4cc 185 PRINTS PR01002 Flagellar protein FlgJ signature 96 117 1.3E-9 T 13-10-2018 RAM_45710 0eb3c9e3a656ff81a92828e3a148c4cc 185 Gene3D G3DSA:1.10.530.10 35 174 3.4E-35 T 13-10-2018 RAM_45710 0eb3c9e3a656ff81a92828e3a148c4cc 185 Gene3D G3DSA:2.10.70.40 68 121 3.4E-35 T 13-10-2018 RAM_45710 0eb3c9e3a656ff81a92828e3a148c4cc 185 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 40 177 5.9E-24 T 13-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 RAM_14415 8d6a4f953add6c1f1328009232bbdc2b 110 Pfam PF02694 Uncharacterised BCR, YnfA/UPF0060 family 2 109 9.5E-45 T 13-10-2018 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 RAM_14415 8d6a4f953add6c1f1328009232bbdc2b 110 SUPERFAMILY SSF103481 9 107 4.97E-10 T 13-10-2018 RAM_14415 8d6a4f953add6c1f1328009232bbdc2b 110 Hamap MF_00010 UPF0060 membrane protein YnfA [ynfA]. 3 108 21.241 T 13-10-2018 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 RAM_06810 ad270fc5fb3e86586698c25712b5bfd6 236 Pfam PF00106 short chain dehydrogenase 3 181 1.1E-15 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_06810 ad270fc5fb3e86586698c25712b5bfd6 236 SUPERFAMILY SSF51735 3 221 5.48E-23 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_06810 ad270fc5fb3e86586698c25712b5bfd6 236 Gene3D G3DSA:3.40.50.720 1 234 3.0E-23 T 13-10-2018 RAM_20010 d593e476d3fbf7e0ad65ae99861017cf 419 PRINTS PR00385 P450 superfamily signature 291 302 7.0E-6 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_20010 d593e476d3fbf7e0ad65ae99861017cf 419 PRINTS PR00385 P450 superfamily signature 359 368 7.0E-6 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_20010 d593e476d3fbf7e0ad65ae99861017cf 419 PRINTS PR00385 P450 superfamily signature 368 379 7.0E-6 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_20010 d593e476d3fbf7e0ad65ae99861017cf 419 PRINTS PR00385 P450 superfamily signature 256 273 7.0E-6 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_20010 d593e476d3fbf7e0ad65ae99861017cf 419 Pfam PF00067 Cytochrome P450 203 388 1.1E-19 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_20010 d593e476d3fbf7e0ad65ae99861017cf 419 SUPERFAMILY SSF48264 34 419 3.41E-90 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_20010 d593e476d3fbf7e0ad65ae99861017cf 419 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 361 370 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RAM_20010 d593e476d3fbf7e0ad65ae99861017cf 419 PRINTS PR00359 B-class P450 signature 110 121 1.6E-50 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_20010 d593e476d3fbf7e0ad65ae99861017cf 419 PRINTS PR00359 B-class P450 signature 368 379 1.6E-50 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_20010 d593e476d3fbf7e0ad65ae99861017cf 419 PRINTS PR00359 B-class P450 signature 171 186 1.6E-50 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_20010 d593e476d3fbf7e0ad65ae99861017cf 419 PRINTS PR00359 B-class P450 signature 154 170 1.6E-50 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_20010 d593e476d3fbf7e0ad65ae99861017cf 419 PRINTS PR00359 B-class P450 signature 338 353 1.6E-50 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_20010 d593e476d3fbf7e0ad65ae99861017cf 419 PRINTS PR00359 B-class P450 signature 210 232 1.6E-50 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_20010 d593e476d3fbf7e0ad65ae99861017cf 419 PRINTS PR00359 B-class P450 signature 359 368 1.6E-50 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_20010 d593e476d3fbf7e0ad65ae99861017cf 419 PRINTS PR00359 B-class P450 signature 310 337 1.6E-50 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_20010 d593e476d3fbf7e0ad65ae99861017cf 419 PRINTS PR00359 B-class P450 signature 291 302 1.6E-50 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_20010 d593e476d3fbf7e0ad65ae99861017cf 419 Gene3D G3DSA:1.10.630.10 27 419 1.2E-119 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_47290 755d99d6c75bd62e63189938f7f00af9 203 Gene3D G3DSA:3.90.180.10 1 201 3.2E-40 T 13-10-2018 RAM_47290 755d99d6c75bd62e63189938f7f00af9 203 Pfam PF13602 Zinc-binding dehydrogenase 72 201 1.1E-20 T 13-10-2018 RAM_47290 755d99d6c75bd62e63189938f7f00af9 203 Gene3D G3DSA:3.40.50.720 16 147 3.2E-40 T 13-10-2018 RAM_47290 755d99d6c75bd62e63189938f7f00af9 203 SUPERFAMILY SSF51735 5 178 8.25E-27 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_43805 d38d0b0d39d0b66b8be304728d702dc0 277 SUPERFAMILY SSF161098 76 256 3.66E-22 T 13-10-2018 IPR035906 MetI-like superfamily RAM_43805 d38d0b0d39d0b66b8be304728d702dc0 277 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 97 262 5.9E-17 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_43805 d38d0b0d39d0b66b8be304728d702dc0 277 Gene3D G3DSA:1.10.3720.10 70 266 1.9E-19 T 13-10-2018 IPR035906 MetI-like superfamily RAM_34135 25bf255d4cb63068152b335309d0b6d2 306 SMART SM00829 11 304 9.1E-17 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_34135 25bf255d4cb63068152b335309d0b6d2 306 Gene3D G3DSA:3.90.180.10 9 303 4.2E-75 T 13-10-2018 RAM_34135 25bf255d4cb63068152b335309d0b6d2 306 SUPERFAMILY SSF50129 3 150 7.91E-33 T 13-10-2018 IPR011032 GroES-like superfamily RAM_34135 25bf255d4cb63068152b335309d0b6d2 306 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 123 2.2E-8 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_34135 25bf255d4cb63068152b335309d0b6d2 306 SUPERFAMILY SSF51735 116 236 5.53E-26 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_34135 25bf255d4cb63068152b335309d0b6d2 306 Gene3D G3DSA:3.40.50.720 127 255 4.2E-75 T 13-10-2018 RAM_34135 25bf255d4cb63068152b335309d0b6d2 306 Pfam PF13602 Zinc-binding dehydrogenase 202 304 1.5E-14 T 13-10-2018 RAM_34350 cee07bbe212d066a5c279aa5384a4e60 703 Gene3D G3DSA:1.10.10.10 434 510 5.6E-7 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_34350 cee07bbe212d066a5c279aa5384a4e60 703 Pfam PF00270 DEAD/DEAH box helicase 31 200 4.8E-16 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RAM_34350 cee07bbe212d066a5c279aa5384a4e60 703 SUPERFAMILY SSF53271 577 700 2.1E-13 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like RAM_34350 cee07bbe212d066a5c279aa5384a4e60 703 SUPERFAMILY SSF52540 36 357 7.51E-52 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_34350 cee07bbe212d066a5c279aa5384a4e60 703 Pfam PF16124 RecQ zinc-binding 444 487 7.6E-6 T 13-10-2018 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain RAM_34350 cee07bbe212d066a5c279aa5384a4e60 703 Gene3D G3DSA:3.40.50.300 4 214 1.1E-54 T 13-10-2018 RAM_34350 cee07bbe212d066a5c279aa5384a4e60 703 SMART SM00490 265 346 4.4E-21 T 13-10-2018 IPR001650 Helicase, C-terminal RAM_34350 cee07bbe212d066a5c279aa5384a4e60 703 Gene3D G3DSA:3.40.50.2020 573 703 1.2E-9 T 13-10-2018 RAM_34350 cee07bbe212d066a5c279aa5384a4e60 703 Gene3D G3DSA:3.40.50.300 227 390 1.6E-28 T 13-10-2018 RAM_34350 cee07bbe212d066a5c279aa5384a4e60 703 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 27 359 1.4E-68 T 13-10-2018 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 RAM_34350 cee07bbe212d066a5c279aa5384a4e60 703 SMART SM00487 24 229 6.1E-23 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RAM_34350 cee07bbe212d066a5c279aa5384a4e60 703 Pfam PF00271 Helicase conserved C-terminal domain 248 345 1.0E-12 T 13-10-2018 IPR001650 Helicase, C-terminal RAM_34350 cee07bbe212d066a5c279aa5384a4e60 703 ProSitePatterns PS00690 DEAH-box subfamily ATP-dependent helicases signature. 150 159 - T 13-10-2018 IPR002464 DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site RAM_10320 861495d385578d40148d3db4557eac41 589 Gene3D G3DSA:1.20.1720.10 24 238 1.8E-26 T 13-10-2018 RAM_10320 861495d385578d40148d3db4557eac41 589 SUPERFAMILY SSF103473 218 561 2.35E-23 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_10320 861495d385578d40148d3db4557eac41 589 SUPERFAMILY SSF103473 11 210 3.27E-29 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_10320 861495d385578d40148d3db4557eac41 589 Gene3D G3DSA:1.20.1250.20 306 493 1.1E-17 T 13-10-2018 RAM_10320 861495d385578d40148d3db4557eac41 589 Pfam PF07690 Major Facilitator Superfamily 26 439 1.5E-35 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_13565 a591961ed52f004968b15d8a1c14391e 515 Pfam PF08386 TAP-like protein 414 513 6.4E-22 T 13-10-2018 IPR013595 Peptidase S33 tripeptidyl aminopeptidase-like, C-terminal RAM_13565 a591961ed52f004968b15d8a1c14391e 515 SUPERFAMILY SSF53474 113 487 1.62E-17 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_00500 8c061d217b1109c26e6c1ccc9702b499 319 SUPERFAMILY SSF53850 46 318 1.9E-61 T 13-10-2018 RAM_00500 8c061d217b1109c26e6c1ccc9702b499 319 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 46 312 1.4E-57 T 13-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 RAM_00500 8c061d217b1109c26e6c1ccc9702b499 319 Gene3D G3DSA:3.40.190.10 48 317 7.5E-88 T 13-10-2018 RAM_00500 8c061d217b1109c26e6c1ccc9702b499 319 Gene3D G3DSA:3.40.190.120 149 256 7.5E-88 T 13-10-2018 RAM_06830 2bb9a3d31d2988acb1d83615d70a393d 200 Gene3D G3DSA:1.10.357.10 6 190 3.4E-38 T 13-10-2018 RAM_06830 2bb9a3d31d2988acb1d83615d70a393d 200 Pfam PF13977 BetI-type transcriptional repressor, C-terminal 83 187 9.8E-19 T 13-10-2018 IPR039538 BetI-type transcriptional repressor, C-terminal RAM_06830 2bb9a3d31d2988acb1d83615d70a393d 200 SUPERFAMILY SSF46689 6 81 1.08E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_06830 2bb9a3d31d2988acb1d83615d70a393d 200 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 57 2.1E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_06830 2bb9a3d31d2988acb1d83615d70a393d 200 SUPERFAMILY SSF48498 83 177 9.4E-16 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_17310 3a01990f394d89e210cb7326a7f50cb8 114 Gene3D G3DSA:3.10.180.10 17 110 6.2E-9 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_17310 3a01990f394d89e210cb7326a7f50cb8 114 SUPERFAMILY SSF54593 5 112 9.02E-14 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_18825 ff0d08a2c64a09f5ace628a2df1e0a46 510 Gene3D G3DSA:3.50.50.60 3 340 1.0E-105 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_18825 ff0d08a2c64a09f5ace628a2df1e0a46 510 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 279 294 6.5E-40 T 13-10-2018 RAM_18825 ff0d08a2c64a09f5ace628a2df1e0a46 510 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 3 25 6.5E-40 T 13-10-2018 RAM_18825 ff0d08a2c64a09f5ace628a2df1e0a46 510 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 151 166 6.5E-40 T 13-10-2018 RAM_18825 ff0d08a2c64a09f5ace628a2df1e0a46 510 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 294 310 6.5E-40 T 13-10-2018 RAM_18825 ff0d08a2c64a09f5ace628a2df1e0a46 510 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 329 345 6.5E-40 T 13-10-2018 RAM_18825 ff0d08a2c64a09f5ace628a2df1e0a46 510 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 311 329 6.5E-40 T 13-10-2018 RAM_18825 ff0d08a2c64a09f5ace628a2df1e0a46 510 SUPERFAMILY SSF51905 2 346 7.02E-61 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_18825 ff0d08a2c64a09f5ace628a2df1e0a46 510 Gene3D G3DSA:3.30.70.2450 180 268 1.0E-105 T 13-10-2018 RAM_18825 ff0d08a2c64a09f5ace628a2df1e0a46 510 SUPERFAMILY SSF52833 388 505 2.68E-8 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RAM_18825 ff0d08a2c64a09f5ace628a2df1e0a46 510 Pfam PF01494 FAD binding domain 2 338 3.4E-80 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_18825 ff0d08a2c64a09f5ace628a2df1e0a46 510 Gene3D G3DSA:3.40.30.120 384 507 4.0E-16 T 13-10-2018 RAM_25170 5c325310dd053edfc9c62ec273f2c933 464 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 353 460 1.7E-12 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_25170 5c325310dd053edfc9c62ec273f2c933 464 SMART SM00304 184 236 6.6E-6 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_25170 5c325310dd053edfc9c62ec273f2c933 464 SMART SM00388 237 300 5.8E-7 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_25170 5c325310dd053edfc9c62ec273f2c933 464 Pfam PF00512 His Kinase A (phospho-acceptor) domain 238 299 1.4E-6 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_25170 5c325310dd053edfc9c62ec273f2c933 464 SUPERFAMILY SSF47384 220 298 8.04E-11 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RAM_25170 5c325310dd053edfc9c62ec273f2c933 464 Gene3D G3DSA:1.10.287.130 188 301 1.1E-19 T 13-10-2018 RAM_25170 5c325310dd053edfc9c62ec273f2c933 464 Pfam PF00672 HAMP domain 184 230 2.8E-7 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_25170 5c325310dd053edfc9c62ec273f2c933 464 SUPERFAMILY SSF55874 311 459 3.41E-28 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_25170 5c325310dd053edfc9c62ec273f2c933 464 PRINTS PR00344 Bacterial sensor protein C-terminal signature 421 439 9.5E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_25170 5c325310dd053edfc9c62ec273f2c933 464 PRINTS PR00344 Bacterial sensor protein C-terminal signature 388 402 9.5E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_25170 5c325310dd053edfc9c62ec273f2c933 464 PRINTS PR00344 Bacterial sensor protein C-terminal signature 445 458 9.5E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_25170 5c325310dd053edfc9c62ec273f2c933 464 Gene3D G3DSA:3.30.565.10 309 462 4.2E-27 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_25170 5c325310dd053edfc9c62ec273f2c933 464 SMART SM00387 351 461 3.7E-21 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_26220 7e974dd6a5496f3052d004abefcc814e 143 SMART SM00347 32 127 8.8E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_26220 7e974dd6a5496f3052d004abefcc814e 143 Pfam PF12802 MarR family 38 95 3.0E-13 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_26220 7e974dd6a5496f3052d004abefcc814e 143 Gene3D G3DSA:1.10.10.10 6 142 3.2E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_26220 7e974dd6a5496f3052d004abefcc814e 143 ProSitePatterns PS01117 MarR-type HTH domain signature. 70 104 - T 13-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site RAM_26220 7e974dd6a5496f3052d004abefcc814e 143 SUPERFAMILY SSF46785 14 127 1.69E-25 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_12845 74f5180fa9a4f5abddada1c2b553a48f 84 Gene3D G3DSA:3.30.1370.110 1 82 6.7E-12 T 13-10-2018 RAM_12845 74f5180fa9a4f5abddada1c2b553a48f 84 SUPERFAMILY SSF160443 3 81 1.26E-5 T 13-10-2018 IPR036063 Smr domain superfamily RAM_12845 74f5180fa9a4f5abddada1c2b553a48f 84 Pfam PF01713 Smr domain 5 82 6.1E-12 T 13-10-2018 IPR002625 Smr domain RAM_40095 772ae291176de46a0fe83c5ddb7ff209 319 Gene3D G3DSA:3.40.50.720 129 264 5.7E-82 T 13-10-2018 RAM_40095 772ae291176de46a0fe83c5ddb7ff209 319 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 24 91 7.9E-9 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_40095 772ae291176de46a0fe83c5ddb7ff209 319 Pfam PF13602 Zinc-binding dehydrogenase 187 313 2.2E-25 T 13-10-2018 RAM_40095 772ae291176de46a0fe83c5ddb7ff209 319 Gene3D G3DSA:3.90.180.10 4 312 5.7E-82 T 13-10-2018 RAM_40095 772ae291176de46a0fe83c5ddb7ff209 319 SMART SM00829 6 313 4.0E-10 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_40095 772ae291176de46a0fe83c5ddb7ff209 319 SUPERFAMILY SSF51735 118 290 1.12E-29 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_40095 772ae291176de46a0fe83c5ddb7ff209 319 SUPERFAMILY SSF50129 4 152 4.41E-29 T 13-10-2018 IPR011032 GroES-like superfamily RAM_20275 ea1cf8a151bcf3eaad7167e951a682eb 355 Gene3D G3DSA:3.40.50.2300 61 336 2.1E-75 T 13-10-2018 RAM_20275 ea1cf8a151bcf3eaad7167e951a682eb 355 SUPERFAMILY SSF53822 57 349 1.38E-58 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_20275 ea1cf8a151bcf3eaad7167e951a682eb 355 Pfam PF13407 Periplasmic binding protein domain 61 319 2.1E-38 T 13-10-2018 IPR025997 Periplasmic binding protein RAM_20275 ea1cf8a151bcf3eaad7167e951a682eb 355 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 13 34 5.5E-5 T 13-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal RAM_20275 ea1cf8a151bcf3eaad7167e951a682eb 355 Gene3D G3DSA:3.40.50.2300 163 348 2.1E-75 T 13-10-2018 RAM_26505 26b074fe6829fc9a407a6d2272964efb 287 TIGRFAM TIGR02778 ligD_pol: DNA ligase D, polymerase domain 1 246 1.4E-78 T 13-10-2018 IPR014145 DNA ligase D, polymerase domain RAM_26505 26b074fe6829fc9a407a6d2272964efb 287 Gene3D G3DSA:3.90.920.30 8 286 3.4E-95 T 13-10-2018 RAM_23480 98c88fa1ecf93aba1e6a669745762555 314 TIGRFAM TIGR02778 ligD_pol: DNA ligase D, polymerase domain 15 262 3.0E-69 T 13-10-2018 IPR014145 DNA ligase D, polymerase domain RAM_23480 98c88fa1ecf93aba1e6a669745762555 314 Gene3D G3DSA:3.90.920.30 22 299 2.1E-87 T 13-10-2018 RAM_23480 98c88fa1ecf93aba1e6a669745762555 314 Pfam PF01896 DNA primase small subunit 136 258 3.3E-8 T 13-10-2018 IPR002755 DNA primase, small subunit GO:0003896|GO:0006269 Reactome: R-HSA-113501|Reactome: R-HSA-174411|Reactome: R-HSA-174430|Reactome: R-HSA-68952|Reactome: R-HSA-68962|Reactome: R-HSA-69091|Reactome: R-HSA-69166|Reactome: R-HSA-69183 RAM_43610 77482479581c88002c47634d1a8a0c3b 176 Gene3D G3DSA:1.10.10.10 90 164 3.2E-13 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_43610 77482479581c88002c47634d1a8a0c3b 176 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 9 160 3.2E-13 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_43610 77482479581c88002c47634d1a8a0c3b 176 SUPERFAMILY SSF88659 103 161 3.36E-10 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_43610 77482479581c88002c47634d1a8a0c3b 176 Pfam PF04542 Sigma-70 region 2 13 80 1.4E-9 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_43610 77482479581c88002c47634d1a8a0c3b 176 SUPERFAMILY SSF88946 5 94 3.92E-14 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_43610 77482479581c88002c47634d1a8a0c3b 176 Pfam PF08281 Sigma-70, region 4 107 157 4.4E-12 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_43610 77482479581c88002c47634d1a8a0c3b 176 TIGRFAM TIGR02983 SigE-fam_strep: RNA polymerase sigma-70 factor, sigma-E family 5 162 2.1E-48 T 13-10-2018 IPR014325 RNA polymerase sigma-E factor, actinobacteria GO:0016987 RAM_43610 77482479581c88002c47634d1a8a0c3b 176 Gene3D G3DSA:1.10.1740.10 2 79 5.1E-8 T 13-10-2018 RAM_16075 49e94f6a5b72c5836d1b2dda5e6b23a6 254 Pfam PF12730 ABC-2 family transporter protein 9 188 3.0E-8 T 13-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 RAM_31415 6d89139a0a9cadf6179f5bdc03094fc9 305 Pfam PF00583 Acetyltransferase (GNAT) family 195 291 2.2E-5 T 13-10-2018 IPR000182 GNAT domain RAM_31415 6d89139a0a9cadf6179f5bdc03094fc9 305 Gene3D G3DSA:3.40.630.30 68 302 1.0E-19 T 13-10-2018 RAM_31415 6d89139a0a9cadf6179f5bdc03094fc9 305 SUPERFAMILY SSF55729 80 296 1.72E-21 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_01980 5f2eed30063ff60730e25129b84772b0 191 SUPERFAMILY SSF46689 6 64 7.48E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_01980 5f2eed30063ff60730e25129b84772b0 191 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 59 3.3E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_01980 5f2eed30063ff60730e25129b84772b0 191 SUPERFAMILY SSF48498 72 177 9.12E-14 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_01980 5f2eed30063ff60730e25129b84772b0 191 Pfam PF16859 Bacterial transcriptional repressor C-terminal 71 173 1.7E-17 T 13-10-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RAM_01980 5f2eed30063ff60730e25129b84772b0 191 Gene3D G3DSA:1.10.357.10 53 178 8.6E-18 T 13-10-2018 RAM_01980 5f2eed30063ff60730e25129b84772b0 191 Gene3D G3DSA:1.10.10.60 5 52 5.9E-18 T 13-10-2018 RAM_02390 45b0969fdf6ece19c0df71f6d356c963 270 SUPERFAMILY SSF48179 158 266 4.76E-36 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RAM_02390 45b0969fdf6ece19c0df71f6d356c963 270 ProSitePatterns PS00521 Delta 1-pyrroline-5-carboxylate reductase signature. 219 241 - T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 RAM_02390 45b0969fdf6ece19c0df71f6d356c963 270 Gene3D G3DSA:3.40.50.720 2 161 2.4E-43 T 13-10-2018 RAM_02390 45b0969fdf6ece19c0df71f6d356c963 270 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 159 263 4.0E-37 T 13-10-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 RAM_02390 45b0969fdf6ece19c0df71f6d356c963 270 Gene3D G3DSA:1.10.3730.10 162 265 9.0E-40 T 13-10-2018 RAM_02390 45b0969fdf6ece19c0df71f6d356c963 270 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 4 263 1.4E-80 T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 RAM_02390 45b0969fdf6ece19c0df71f6d356c963 270 SUPERFAMILY SSF51735 4 157 2.05E-35 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_02390 45b0969fdf6ece19c0df71f6d356c963 270 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 2 263 26.916 T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 RAM_02390 45b0969fdf6ece19c0df71f6d356c963 270 PIRSF PIRSF000193 1 266 1.5E-72 T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 RAM_02390 45b0969fdf6ece19c0df71f6d356c963 270 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 4 96 3.0E-19 T 13-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal RAM_14885 30a9d2939268f74bd209e242205fedfb 162 SUPERFAMILY SSF46785 33 137 5.64E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_14885 30a9d2939268f74bd209e242205fedfb 162 SMART SM00347 35 139 6.1E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_14885 30a9d2939268f74bd209e242205fedfb 162 Gene3D G3DSA:1.10.10.10 10 154 3.2E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_14885 30a9d2939268f74bd209e242205fedfb 162 Pfam PF12802 MarR family 41 101 1.5E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_27865 8fd15f49f83d52353f15855a00ff4a44 887 Pfam PF00690 Cation transporter/ATPase, N-terminus 22 86 5.8E-13 T 13-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 RAM_27865 8fd15f49f83d52353f15855a00ff4a44 887 Gene3D G3DSA:1.20.1110.10 235 351 3.0E-35 T 13-10-2018 RAM_27865 8fd15f49f83d52353f15855a00ff4a44 887 SUPERFAMILY SSF81653 128 235 1.27E-28 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 RAM_27865 8fd15f49f83d52353f15855a00ff4a44 887 Gene3D G3DSA:3.40.1110.10 363 507 6.1E-26 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 RAM_27865 8fd15f49f83d52353f15855a00ff4a44 887 SMART SM00831 18 91 7.0E-10 T 13-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 RAM_27865 8fd15f49f83d52353f15855a00ff4a44 887 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 339 345 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 RAM_27865 8fd15f49f83d52353f15855a00ff4a44 887 SUPERFAMILY SSF81660 344 511 2.62E-34 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 RAM_27865 8fd15f49f83d52353f15855a00ff4a44 887 Pfam PF00702 haloacid dehalogenase-like hydrolase 334 623 8.4E-23 T 13-10-2018 RAM_27865 8fd15f49f83d52353f15855a00ff4a44 887 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 98 354 9.1E-41 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RAM_27865 8fd15f49f83d52353f15855a00ff4a44 887 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 580 696 1.7E-28 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RAM_27865 8fd15f49f83d52353f15855a00ff4a44 887 SUPERFAMILY SSF56784 335 715 7.01E-55 T 13-10-2018 IPR036412 HAD-like superfamily RAM_27865 8fd15f49f83d52353f15855a00ff4a44 887 SUPERFAMILY SSF81665 22 886 5.89E-107 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 RAM_27865 8fd15f49f83d52353f15855a00ff4a44 887 Pfam PF00689 Cation transporting ATPase, C-terminus 695 882 1.0E-45 T 13-10-2018 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 RAM_27865 8fd15f49f83d52353f15855a00ff4a44 887 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 467 485 1.2E-16 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RAM_27865 8fd15f49f83d52353f15855a00ff4a44 887 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 609 625 1.2E-16 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RAM_27865 8fd15f49f83d52353f15855a00ff4a44 887 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 641 666 1.2E-16 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RAM_27865 8fd15f49f83d52353f15855a00ff4a44 887 Pfam PF00122 E1-E2 ATPase 127 317 2.1E-47 T 13-10-2018 RAM_27865 8fd15f49f83d52353f15855a00ff4a44 887 Gene3D G3DSA:2.70.150.10 99 234 1.1E-39 T 13-10-2018 RAM_27865 8fd15f49f83d52353f15855a00ff4a44 887 Gene3D G3DSA:3.40.50.1000 508 558 3.8E-10 T 13-10-2018 IPR023214 HAD superfamily RAM_27865 8fd15f49f83d52353f15855a00ff4a44 887 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 337 351 3.3E-39 T 13-10-2018 RAM_27865 8fd15f49f83d52353f15855a00ff4a44 887 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 633 645 3.3E-39 T 13-10-2018 RAM_27865 8fd15f49f83d52353f15855a00ff4a44 887 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 507 518 3.3E-39 T 13-10-2018 RAM_27865 8fd15f49f83d52353f15855a00ff4a44 887 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 175 189 3.3E-39 T 13-10-2018 RAM_27865 8fd15f49f83d52353f15855a00ff4a44 887 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 529 539 3.3E-39 T 13-10-2018 RAM_27865 8fd15f49f83d52353f15855a00ff4a44 887 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 609 628 3.3E-39 T 13-10-2018 RAM_27865 8fd15f49f83d52353f15855a00ff4a44 887 Gene3D G3DSA:1.20.1110.10 621 887 2.1E-73 T 13-10-2018 RAM_02300 758245546fd4530a1d6adf719b47368d 233 Pfam PF09335 SNARE associated Golgi protein 38 161 8.1E-15 T 13-10-2018 IPR032816 SNARE associated Golgi protein RAM_45520 c00f42e59bbecfb63fade1a3a8bfc9eb 182 SUPERFAMILY SSF52218 1 176 5.2E-33 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RAM_45520 c00f42e59bbecfb63fade1a3a8bfc9eb 182 Pfam PF03358 NADPH-dependent FMN reductase 1 138 3.4E-24 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 RAM_45520 c00f42e59bbecfb63fade1a3a8bfc9eb 182 Gene3D G3DSA:3.40.50.360 1 182 2.1E-38 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RAM_13050 c86a332feb21679510fd06a6df5dc92a 317 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 108 121 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RAM_13050 c86a332feb21679510fd06a6df5dc92a 317 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 277 303 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RAM_13050 c86a332feb21679510fd06a6df5dc92a 317 PRINTS PR00046 Major sigma-70 factor signature 256 268 2.5E-28 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RAM_13050 c86a332feb21679510fd06a6df5dc92a 317 PRINTS PR00046 Major sigma-70 factor signature 132 140 2.5E-28 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RAM_13050 c86a332feb21679510fd06a6df5dc92a 317 PRINTS PR00046 Major sigma-70 factor signature 277 292 2.5E-28 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RAM_13050 c86a332feb21679510fd06a6df5dc92a 317 PRINTS PR00046 Major sigma-70 factor signature 108 121 2.5E-28 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RAM_13050 c86a332feb21679510fd06a6df5dc92a 317 PRINTS PR00046 Major sigma-70 factor signature 292 303 2.5E-28 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RAM_13050 c86a332feb21679510fd06a6df5dc92a 317 SUPERFAMILY SSF88946 19 154 3.01E-51 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_13050 c86a332feb21679510fd06a6df5dc92a 317 SUPERFAMILY SSF88659 214 312 1.44E-26 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_13050 c86a332feb21679510fd06a6df5dc92a 317 Pfam PF00140 Sigma-70 factor, region 1.2 19 52 3.6E-13 T 13-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_13050 c86a332feb21679510fd06a6df5dc92a 317 Gene3D G3DSA:1.10.601.10 17 55 3.4E-6 T 13-10-2018 RAM_13050 c86a332feb21679510fd06a6df5dc92a 317 Gene3D G3DSA:1.10.601.10 56 156 1.0E-49 T 13-10-2018 RAM_13050 c86a332feb21679510fd06a6df5dc92a 317 Gene3D G3DSA:1.10.10.10 157 234 3.0E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_13050 c86a332feb21679510fd06a6df5dc92a 317 Pfam PF04542 Sigma-70 region 2 84 153 4.7E-22 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_13050 c86a332feb21679510fd06a6df5dc92a 317 Pfam PF04545 Sigma-70, region 4 252 305 1.9E-19 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 RAM_13050 c86a332feb21679510fd06a6df5dc92a 317 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 81 305 4.9E-37 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_13050 c86a332feb21679510fd06a6df5dc92a 317 Gene3D G3DSA:1.10.10.10 240 317 1.2E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_13050 c86a332feb21679510fd06a6df5dc92a 317 Pfam PF04539 Sigma-70 region 3 163 238 8.9E-24 T 13-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 RAM_13050 c86a332feb21679510fd06a6df5dc92a 317 SUPERFAMILY SSF88659 157 230 1.26E-17 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_08430 2367d88135d8e72a3d5980e1ac255db7 455 SUPERFAMILY SSF103473 10 447 1.7E-50 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_08430 2367d88135d8e72a3d5980e1ac255db7 455 Pfam PF07690 Major Facilitator Superfamily 27 327 1.7E-28 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_08430 2367d88135d8e72a3d5980e1ac255db7 455 Gene3D G3DSA:1.20.1250.20 260 449 4.3E-11 T 13-10-2018 RAM_08430 2367d88135d8e72a3d5980e1ac255db7 455 Gene3D G3DSA:1.20.1720.10 24 259 2.2E-30 T 13-10-2018 RAM_36680 5e0df55e0ff8d55d892d6aa621530c00 64 Gene3D G3DSA:3.30.70.20 1 64 3.4E-18 T 13-10-2018 RAM_36680 5e0df55e0ff8d55d892d6aa621530c00 64 PRINTS PR00352 3Fe-4S ferredoxin signature 16 26 6.3E-5 T 13-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 RAM_36680 5e0df55e0ff8d55d892d6aa621530c00 64 PRINTS PR00352 3Fe-4S ferredoxin signature 48 60 6.3E-5 T 13-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 RAM_36680 5e0df55e0ff8d55d892d6aa621530c00 64 PRINTS PR00352 3Fe-4S ferredoxin signature 5 16 6.3E-5 T 13-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 RAM_36680 5e0df55e0ff8d55d892d6aa621530c00 64 SUPERFAMILY SSF54862 2 62 4.89E-12 T 13-10-2018 RAM_36680 5e0df55e0ff8d55d892d6aa621530c00 64 Pfam PF13370 4Fe-4S single cluster domain of Ferredoxin I 5 61 1.2E-12 T 13-10-2018 RAM_47480 8e7e92adda3ef79443b5df01d6b66122 518 Pfam PF00350 Dynamin family 49 203 2.6E-12 T 13-10-2018 IPR022812 Dynamin superfamily RAM_47480 8e7e92adda3ef79443b5df01d6b66122 518 SUPERFAMILY SSF52540 44 244 1.25E-24 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_47480 8e7e92adda3ef79443b5df01d6b66122 518 Gene3D G3DSA:3.40.50.300 49 304 1.1E-23 T 13-10-2018 RAM_44430 25eab4b986d70cf07e462b46b75bcc6f 293 Pfam PF08281 Sigma-70, region 4 109 159 6.8E-10 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_44430 25eab4b986d70cf07e462b46b75bcc6f 293 SUPERFAMILY SSF88946 3 89 1.26E-15 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_44430 25eab4b986d70cf07e462b46b75bcc6f 293 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 6 161 1.9E-17 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_44430 25eab4b986d70cf07e462b46b75bcc6f 293 Gene3D G3DSA:3.10.450.50 171 289 2.0E-9 T 13-10-2018 RAM_44430 25eab4b986d70cf07e462b46b75bcc6f 293 Gene3D G3DSA:1.10.1740.10 2 91 7.5E-10 T 13-10-2018 RAM_44430 25eab4b986d70cf07e462b46b75bcc6f 293 Gene3D G3DSA:1.10.10.10 92 164 5.8E-11 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_44430 25eab4b986d70cf07e462b46b75bcc6f 293 SUPERFAMILY SSF54427 174 288 3.8E-16 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_44430 25eab4b986d70cf07e462b46b75bcc6f 293 Pfam PF04542 Sigma-70 region 2 10 73 7.4E-13 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_44430 25eab4b986d70cf07e462b46b75bcc6f 293 SUPERFAMILY SSF88659 84 161 2.62E-11 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_27250 75863d5f06ea6c332cdcc1bac23ca1a5 166 Gene3D G3DSA:1.10.1740.10 1 75 5.1E-13 T 13-10-2018 RAM_27250 75863d5f06ea6c332cdcc1bac23ca1a5 166 SUPERFAMILY SSF88946 4 79 1.37E-13 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_27250 75863d5f06ea6c332cdcc1bac23ca1a5 166 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 4 153 5.0E-24 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_27250 75863d5f06ea6c332cdcc1bac23ca1a5 166 Pfam PF08281 Sigma-70, region 4 99 151 2.2E-12 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_27250 75863d5f06ea6c332cdcc1bac23ca1a5 166 SUPERFAMILY SSF88659 83 155 2.24E-14 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_27250 75863d5f06ea6c332cdcc1bac23ca1a5 166 Pfam PF04542 Sigma-70 region 2 8 73 1.3E-10 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_27250 75863d5f06ea6c332cdcc1bac23ca1a5 166 TIGRFAM TIGR02983 SigE-fam_strep: RNA polymerase sigma-70 factor, sigma-E family 3 155 3.6E-47 T 13-10-2018 IPR014325 RNA polymerase sigma-E factor, actinobacteria GO:0016987 RAM_27250 75863d5f06ea6c332cdcc1bac23ca1a5 166 Gene3D G3DSA:1.10.10.10 78 157 1.5E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_15150 295683c62a07c54bdb0bff24adbceadd 243 TIGRFAM TIGR02009 PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase 8 210 1.7E-48 T 13-10-2018 IPR010976 Beta-phosphoglucomutase hydrolase RAM_15150 295683c62a07c54bdb0bff24adbceadd 243 Pfam PF13419 Haloacid dehalogenase-like hydrolase 11 209 1.3E-17 T 13-10-2018 RAM_15150 295683c62a07c54bdb0bff24adbceadd 243 SUPERFAMILY SSF56784 8 241 7.83E-40 T 13-10-2018 IPR036412 HAD-like superfamily RAM_15150 295683c62a07c54bdb0bff24adbceadd 243 Gene3D G3DSA:3.40.50.1000 10 218 1.0E-51 T 13-10-2018 IPR023214 HAD superfamily RAM_15150 295683c62a07c54bdb0bff24adbceadd 243 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 101 213 1.2E-13 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_15150 295683c62a07c54bdb0bff24adbceadd 243 Gene3D G3DSA:1.10.150.240 21 114 1.0E-51 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 RAM_08270 1513a80603765c00c7577e194ecc8209 483 Gene3D G3DSA:3.30.70.2450 181 266 1.4E-121 T 13-10-2018 RAM_08270 1513a80603765c00c7577e194ecc8209 483 Gene3D G3DSA:3.50.50.60 12 341 1.4E-121 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_08270 1513a80603765c00c7577e194ecc8209 483 Pfam PF01494 FAD binding domain 12 343 5.7E-87 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_08270 1513a80603765c00c7577e194ecc8209 483 SUPERFAMILY SSF51905 10 355 4.43E-65 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_08270 1513a80603765c00c7577e194ecc8209 483 Gene3D G3DSA:3.40.30.120 388 481 7.9E-28 T 13-10-2018 RAM_08270 1513a80603765c00c7577e194ecc8209 483 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 152 167 2.1E-46 T 13-10-2018 RAM_08270 1513a80603765c00c7577e194ecc8209 483 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 277 292 2.1E-46 T 13-10-2018 RAM_08270 1513a80603765c00c7577e194ecc8209 483 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 292 308 2.1E-46 T 13-10-2018 RAM_08270 1513a80603765c00c7577e194ecc8209 483 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 12 34 2.1E-46 T 13-10-2018 RAM_08270 1513a80603765c00c7577e194ecc8209 483 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 328 344 2.1E-46 T 13-10-2018 RAM_08270 1513a80603765c00c7577e194ecc8209 483 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 310 328 2.1E-46 T 13-10-2018 RAM_38270 803d91c2893ac9eef22b252c07fb15fd 1109 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 359 776 3.6E-138 T 13-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAM_38270 803d91c2893ac9eef22b252c07fb15fd 1109 Gene3D G3DSA:2.40.50.140 1002 1099 4.7E-5 T 13-10-2018 RAM_38270 803d91c2893ac9eef22b252c07fb15fd 1109 Gene3D G3DSA:3.20.20.140 40 335 9.6E-74 T 13-10-2018 RAM_38270 803d91c2893ac9eef22b252c07fb15fd 1109 SUPERFAMILY SSF89550 65 279 5.69E-19 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 RAM_38270 803d91c2893ac9eef22b252c07fb15fd 1109 Pfam PF14579 Helix-hairpin-helix motif 849 941 1.5E-24 T 13-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAM_38270 803d91c2893ac9eef22b252c07fb15fd 1109 Pfam PF02811 PHP domain 67 238 5.1E-28 T 13-10-2018 IPR004013 PHP domain GO:0003824 RAM_38270 803d91c2893ac9eef22b252c07fb15fd 1109 SMART SM00481 66 133 3.9E-23 T 13-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal RAM_38270 803d91c2893ac9eef22b252c07fb15fd 1109 Hamap MF_01902 Error-prone DNA polymerase [dnaE2]. 65 1109 12.51 T 13-10-2018 IPR023073 DNA polymerase, error-prone GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAM_38270 803d91c2893ac9eef22b252c07fb15fd 1109 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 66 943 1.0E-197 T 13-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAM_35555 dd7fd6561aca925de7ace6fc681899b2 333 SUPERFAMILY SSF51735 3 328 1.91E-26 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_35555 dd7fd6561aca925de7ace6fc681899b2 333 Pfam PF01370 NAD dependent epimerase/dehydratase family 6 110 6.2E-6 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 RAM_35555 dd7fd6561aca925de7ace6fc681899b2 333 Gene3D G3DSA:3.40.50.720 1 333 1.5E-99 T 13-10-2018 RAM_43375 4dcf9e2f334ef0f58987ed97af5d24a8 101 Gene3D G3DSA:2.10.150.10 1 101 4.4E-43 T 13-10-2018 IPR036461 Urease, beta subunit superfamily KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RAM_43375 4dcf9e2f334ef0f58987ed97af5d24a8 101 SUPERFAMILY SSF51278 1 99 1.96E-43 T 13-10-2018 IPR036461 Urease, beta subunit superfamily KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RAM_43375 4dcf9e2f334ef0f58987ed97af5d24a8 101 TIGRFAM TIGR00192 urease_beta: urease, beta subunit 1 95 1.1E-35 T 13-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RAM_43375 4dcf9e2f334ef0f58987ed97af5d24a8 101 Pfam PF00699 Urease beta subunit 3 99 9.1E-41 T 13-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RAM_43375 4dcf9e2f334ef0f58987ed97af5d24a8 101 Hamap MF_01954 Urease subunit beta [ureB]. 1 101 29.065 T 13-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RAM_02585 55b213d663bc13dfab68e2b53168f043 93 Pfam PF14012 Protein of unknown function (DUF4229) 15 75 3.5E-12 T 13-10-2018 IPR025323 Protein of unknown function DUF4229 RAM_36260 59abc7e4df4d8a2bd90c90d33f00d6df 77 Pfam PF01381 Helix-turn-helix 9 62 1.4E-14 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_36260 59abc7e4df4d8a2bd90c90d33f00d6df 77 SUPERFAMILY SSF47413 4 66 6.97E-17 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_36260 59abc7e4df4d8a2bd90c90d33f00d6df 77 Gene3D G3DSA:1.10.260.40 4 68 3.7E-22 T 13-10-2018 RAM_36260 59abc7e4df4d8a2bd90c90d33f00d6df 77 SMART SM00530 8 63 7.8E-15 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_10440 fad302091105823a1caedba35e583872 143 SUPERFAMILY SSF55729 10 142 9.57E-28 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_10440 fad302091105823a1caedba35e583872 143 Pfam PF13673 Acetyltransferase (GNAT) domain 45 141 6.0E-11 T 13-10-2018 IPR000182 GNAT domain RAM_10440 fad302091105823a1caedba35e583872 143 Gene3D G3DSA:3.40.630.30 5 142 3.6E-35 T 13-10-2018 RAM_18230 e73be34ef074b165440276d1f00c4266 256 Pfam PF01522 Polysaccharide deacetylase 69 189 1.8E-22 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 RAM_18230 e73be34ef074b165440276d1f00c4266 256 Gene3D G3DSA:3.20.20.370 52 256 6.9E-44 T 13-10-2018 RAM_18230 e73be34ef074b165440276d1f00c4266 256 SUPERFAMILY SSF88713 65 255 7.17E-40 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RAM_15735 8e231cb7f24471a91b0562246f9eba02 237 SUPERFAMILY SSF48008 91 225 9.42E-29 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_15735 8e231cb7f24471a91b0562246f9eba02 237 Pfam PF07729 FCD domain 94 216 5.3E-28 T 13-10-2018 IPR011711 GntR, C-terminal RAM_15735 8e231cb7f24471a91b0562246f9eba02 237 Gene3D G3DSA:1.20.120.530 80 231 3.7E-30 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_15735 8e231cb7f24471a91b0562246f9eba02 237 Gene3D G3DSA:1.10.10.10 1 71 9.5E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_15735 8e231cb7f24471a91b0562246f9eba02 237 SUPERFAMILY SSF46785 4 72 1.52E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_15735 8e231cb7f24471a91b0562246f9eba02 237 Pfam PF00392 Bacterial regulatory proteins, gntR family 6 68 4.0E-17 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_15735 8e231cb7f24471a91b0562246f9eba02 237 SMART SM00895 94 217 6.1E-23 T 13-10-2018 IPR011711 GntR, C-terminal RAM_15735 8e231cb7f24471a91b0562246f9eba02 237 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 42 58 1.6E-5 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_15735 8e231cb7f24471a91b0562246f9eba02 237 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 28 42 1.6E-5 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_15735 8e231cb7f24471a91b0562246f9eba02 237 SMART SM00345 9 68 5.4E-16 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_22895 74375e100d6a5e3cb1b4f0ff12080a4f 195 SUPERFAMILY SSF46689 6 78 1.65E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_22895 74375e100d6a5e3cb1b4f0ff12080a4f 195 Gene3D G3DSA:1.10.357.10 7 193 7.0E-23 T 13-10-2018 RAM_22895 74375e100d6a5e3cb1b4f0ff12080a4f 195 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 61 3.0E-12 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_45505 7ba06beb4c4130e5974c19696b390f69 462 TIGRFAM TIGR01788 Glu-decarb-GAD: glutamate decarboxylase 34 444 3.8E-188 T 13-10-2018 IPR010107 Glutamate decarboxylase GO:0004351|GO:0006536|GO:0030170 KEGG: 00250+4.1.1.15|KEGG: 00410+4.1.1.15|KEGG: 00430+4.1.1.15|KEGG: 00650+4.1.1.15|MetaCyc: PWY-4321 RAM_45505 7ba06beb4c4130e5974c19696b390f69 462 SUPERFAMILY SSF53383 31 444 7.79E-132 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_45505 7ba06beb4c4130e5974c19696b390f69 462 Gene3D G3DSA:3.90.1150.160 361 462 3.7E-28 T 13-10-2018 RAM_45505 7ba06beb4c4130e5974c19696b390f69 462 Gene3D G3DSA:3.40.640.10 73 359 3.7E-82 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_45505 7ba06beb4c4130e5974c19696b390f69 462 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 48 378 1.2E-74 T 13-10-2018 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 RAM_43280 16f6ff5807022c8f0c58a690b90efa47 181 SUPERFAMILY SSF52980 4 157 1.39E-17 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 RAM_43280 16f6ff5807022c8f0c58a690b90efa47 181 Pfam PF05685 Putative restriction endonuclease 10 159 5.3E-20 T 13-10-2018 IPR008538 Domain of unknown function DUF820 RAM_43280 16f6ff5807022c8f0c58a690b90efa47 181 Gene3D G3DSA:3.90.1570.10 1 173 9.8E-16 T 13-10-2018 RAM_32670 89fac63d9dbd49c20c9d9a0d314755d8 247 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 189 5.6E-5 T 13-10-2018 RAM_32670 89fac63d9dbd49c20c9d9a0d314755d8 247 SUPERFAMILY SSF51735 3 245 1.17E-39 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_32670 89fac63d9dbd49c20c9d9a0d314755d8 247 Gene3D G3DSA:3.40.50.720 2 245 1.4E-37 T 13-10-2018 RAM_32670 89fac63d9dbd49c20c9d9a0d314755d8 247 Pfam PF00106 short chain dehydrogenase 4 193 2.4E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_32670 89fac63d9dbd49c20c9d9a0d314755d8 247 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_32670 89fac63d9dbd49c20c9d9a0d314755d8 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 2.4E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_32670 89fac63d9dbd49c20c9d9a0d314755d8 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 2.4E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_32670 89fac63d9dbd49c20c9d9a0d314755d8 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 2.4E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_32670 89fac63d9dbd49c20c9d9a0d314755d8 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 2.4E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_32670 89fac63d9dbd49c20c9d9a0d314755d8 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 2.4E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_38840 ee034da8a1bd715b61b6cceb92f0fe3b 522 Gene3D G3DSA:1.20.1740.10 28 505 1.8E-42 T 13-10-2018 RAM_38840 ee034da8a1bd715b61b6cceb92f0fe3b 522 Pfam PF13520 Amino acid permease 34 485 1.7E-43 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RAM_38840 ee034da8a1bd715b61b6cceb92f0fe3b 522 PIRSF PIRSF006060 11 519 6.5E-64 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RAM_18055 6c4b4f03d5055295d312229bcf7d1013 378 Gene3D G3DSA:3.30.565.10 253 374 1.4E-35 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_18055 6c4b4f03d5055295d312229bcf7d1013 378 Pfam PF07730 Histidine kinase 177 242 3.2E-18 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_18055 6c4b4f03d5055295d312229bcf7d1013 378 SMART SM00387 284 375 2.4E-6 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_18055 6c4b4f03d5055295d312229bcf7d1013 378 SUPERFAMILY SSF55874 258 372 1.86E-16 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_21660 045b635f32b1d3aee084acd7f8899a3f 178 SUPERFAMILY SSF81296 31 125 1.75E-20 T 13-10-2018 IPR014756 Immunoglobulin E-set RAM_21660 045b635f32b1d3aee084acd7f8899a3f 178 Gene3D G3DSA:2.60.40.1220 32 130 5.5E-23 T 13-10-2018 RAM_21660 045b635f32b1d3aee084acd7f8899a3f 178 Pfam PF04234 CopC domain 32 125 2.9E-24 T 13-10-2018 IPR007348 CopC domain GO:0005507|GO:0042597|GO:0046688 RAM_43130 cf2a0eb8c6ae6cdf6dd50f11f89b1745 211 SUPERFAMILY SSF48498 74 186 1.63E-18 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_43130 cf2a0eb8c6ae6cdf6dd50f11f89b1745 211 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 7 20 2.2E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_43130 cf2a0eb8c6ae6cdf6dd50f11f89b1745 211 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 51 2.2E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_43130 cf2a0eb8c6ae6cdf6dd50f11f89b1745 211 SUPERFAMILY SSF46689 4 79 1.4E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_43130 cf2a0eb8c6ae6cdf6dd50f11f89b1745 211 Gene3D G3DSA:1.10.10.60 1 50 2.1E-16 T 13-10-2018 RAM_43130 cf2a0eb8c6ae6cdf6dd50f11f89b1745 211 Gene3D G3DSA:1.10.357.10 51 185 1.4E-38 T 13-10-2018 RAM_43130 cf2a0eb8c6ae6cdf6dd50f11f89b1745 211 Pfam PF00440 Bacterial regulatory proteins, tetR family 9 53 2.1E-14 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_30690 7faa194da3536c168bda3a10319113ca 423 Pfam PF13229 Right handed beta helix region 141 326 5.6E-6 T 13-10-2018 IPR039448 Right handed beta helix domain RAM_30690 7faa194da3536c168bda3a10319113ca 423 SUPERFAMILY SSF51126 22 420 6.52E-32 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor RAM_30690 7faa194da3536c168bda3a10319113ca 423 Gene3D G3DSA:2.160.20.10 18 420 3.0E-38 T 13-10-2018 IPR012334 Pectin lyase fold RAM_05610 86abcdc7f934a25da3484e4919572619 820 Pfam PF17389 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain 406 617 2.2E-15 T 13-10-2018 IPR035396 Alpha-L-rhamnosidase, six-hairpin glycosidase domain RAM_05610 86abcdc7f934a25da3484e4919572619 820 SUPERFAMILY SSF49785 103 203 3.19E-10 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_05610 86abcdc7f934a25da3484e4919572619 820 Pfam PF00754 F5/8 type C domain 100 212 2.5E-9 T 13-10-2018 IPR000421 Coagulation factor 5/8 C-terminal domain RAM_05610 86abcdc7f934a25da3484e4919572619 820 Pfam PF17390 Bacterial alpha-L-rhamnosidase C-terminal domain 727 792 1.7E-11 T 13-10-2018 IPR035398 Alpha-L-rhamnosidase C-terminal domain RAM_05610 86abcdc7f934a25da3484e4919572619 820 Gene3D G3DSA:1.50.10.10 362 719 4.6E-70 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 RAM_05610 86abcdc7f934a25da3484e4919572619 820 Gene3D G3DSA:2.60.120.260 96 210 1.1E-13 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_05610 86abcdc7f934a25da3484e4919572619 820 Gene3D G3DSA:2.60.420.10 720 797 1.6E-17 T 13-10-2018 RAM_05610 86abcdc7f934a25da3484e4919572619 820 SUPERFAMILY SSF48208 355 817 9.36E-56 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_15445 8cd0f03b6a96c12f68647dc0581d4275 229 SUPERFAMILY SSF55729 98 218 6.45E-22 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_15445 8cd0f03b6a96c12f68647dc0581d4275 229 Gene3D G3DSA:3.40.630.30 1 223 7.6E-69 T 13-10-2018 RAM_15445 8cd0f03b6a96c12f68647dc0581d4275 229 Pfam PF08445 FR47-like protein 132 214 3.5E-24 T 13-10-2018 IPR013653 FR47-like GO:0016747 RAM_19835 5cff66537ad1de823f1defb690e13e02 410 Gene3D G3DSA:2.60.120.330 1 410 5.1E-132 T 13-10-2018 IPR027443 Isopenicillin N synthase-like RAM_19835 5cff66537ad1de823f1defb690e13e02 410 SUPERFAMILY SSF51197 4 410 7.23E-126 T 13-10-2018 RAM_19835 5cff66537ad1de823f1defb690e13e02 410 Pfam PF07350 Protein of unknown function (DUF1479) 10 410 2.8E-122 T 13-10-2018 IPR010856 Protein of unknown function DUF1479 RAM_06235 d752948fbe2e93d1cf2656897181ac34 474 Gene3D G3DSA:3.30.590.10 107 462 2.8E-149 T 13-10-2018 RAM_06235 d752948fbe2e93d1cf2656897181ac34 474 ProSitePatterns PS00180 Glutamine synthetase signature 1. 52 70 - T 13-10-2018 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 RAM_06235 d752948fbe2e93d1cf2656897181ac34 474 Pfam PF00120 Glutamine synthetase, catalytic domain 105 471 3.1E-134 T 13-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RAM_06235 d752948fbe2e93d1cf2656897181ac34 474 SMART SM01230 104 383 2.8E-147 T 13-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RAM_06235 d752948fbe2e93d1cf2656897181ac34 474 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 7 473 1.4E-201 T 13-10-2018 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RAM_06235 d752948fbe2e93d1cf2656897181ac34 474 SUPERFAMILY SSF54368 4 102 3.92E-32 T 13-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RAM_06235 d752948fbe2e93d1cf2656897181ac34 474 ProSitePatterns PS00182 Glutamine synthetase class-I adenylation site. 390 402 - T 13-10-2018 IPR001637 Glutamine synthetase class-I, adenylation site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RAM_06235 d752948fbe2e93d1cf2656897181ac34 474 Gene3D G3DSA:3.10.20.70 4 106 4.5E-38 T 13-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RAM_06235 d752948fbe2e93d1cf2656897181ac34 474 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 261 276 - T 13-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 RAM_06235 d752948fbe2e93d1cf2656897181ac34 474 SUPERFAMILY SSF55931 105 473 3.53E-136 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 RAM_06235 d752948fbe2e93d1cf2656897181ac34 474 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 16 97 2.8E-26 T 13-10-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 RAM_43155 87b9abab28c2cf5231164d33ee6a594b 89 Gene3D G3DSA:1.10.8.50 1 89 1.1E-27 T 13-10-2018 RAM_43155 87b9abab28c2cf5231164d33ee6a594b 89 PIRSF PIRSF002134 27 89 4.2E-4 T 13-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_43155 87b9abab28c2cf5231164d33ee6a594b 89 SUPERFAMILY SSF46946 41 88 5.1E-7 T 13-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 RAM_26710 615b609c497e513044824864e2c76746 270 SUPERFAMILY SSF56176 2 174 2.02E-53 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RAM_26710 615b609c497e513044824864e2c76746 270 Gene3D G3DSA:3.30.465.10 58 174 6.9E-38 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 RAM_26710 615b609c497e513044824864e2c76746 270 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 200 267 1.1E-10 T 13-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal RAM_26710 615b609c497e513044824864e2c76746 270 SMART SM01092 180 268 6.0E-23 T 13-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal RAM_26710 615b609c497e513044824864e2c76746 270 SUPERFAMILY SSF55447 179 268 1.83E-20 T 13-10-2018 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily RAM_26710 615b609c497e513044824864e2c76746 270 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 5 174 8.2E-50 T 13-10-2018 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 RAM_26710 615b609c497e513044824864e2c76746 270 Gene3D G3DSA:3.30.390.50 177 270 3.1E-19 T 13-10-2018 RAM_26710 615b609c497e513044824864e2c76746 270 Gene3D G3DSA:3.30.43.10 1 54 2.1E-25 T 13-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 RAM_36050 20c8877e6eed09c5486f6ba6959eeb09 272 SUPERFAMILY SSF89550 3 260 8.5E-42 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 RAM_36050 20c8877e6eed09c5486f6ba6959eeb09 272 Gene3D G3DSA:3.20.20.140 3 243 1.2E-69 T 13-10-2018 RAM_36050 20c8877e6eed09c5486f6ba6959eeb09 272 Pfam PF02811 PHP domain 4 69 1.0E-6 T 13-10-2018 IPR004013 PHP domain GO:0003824 RAM_36050 20c8877e6eed09c5486f6ba6959eeb09 272 Gene3D G3DSA:1.10.150.650 94 162 1.2E-69 T 13-10-2018 RAM_36050 20c8877e6eed09c5486f6ba6959eeb09 272 SMART SM00481 3 66 5.3E-15 T 13-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal RAM_42575 774c0eb0c7e0871a2379e1f045f269b5 329 Gene3D G3DSA:3.40.50.1100 55 160 2.4E-45 T 13-10-2018 RAM_42575 774c0eb0c7e0871a2379e1f045f269b5 329 SUPERFAMILY SSF53686 51 315 9.95E-41 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RAM_42575 774c0eb0c7e0871a2379e1f045f269b5 329 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 52 296 2.1E-27 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RAM_42575 774c0eb0c7e0871a2379e1f045f269b5 329 Gene3D G3DSA:3.40.50.1100 51 311 2.4E-45 T 13-10-2018 RAM_03505 49983a98b0f9f4461b530a8e6d8ac049 92 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 14 85 2.0E-23 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_03505 49983a98b0f9f4461b530a8e6d8ac049 92 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 14 89 23.859 T 13-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_03505 49983a98b0f9f4461b530a8e6d8ac049 92 PRINTS PR00973 Ribosomal protein S17 family signature 33 56 1.4E-11 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_03505 49983a98b0f9f4461b530a8e6d8ac049 92 PRINTS PR00973 Ribosomal protein S17 family signature 65 75 1.4E-11 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_03505 49983a98b0f9f4461b530a8e6d8ac049 92 PRINTS PR00973 Ribosomal protein S17 family signature 75 82 1.4E-11 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_03505 49983a98b0f9f4461b530a8e6d8ac049 92 Pfam PF00366 Ribosomal protein S17 19 85 7.1E-30 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_03505 49983a98b0f9f4461b530a8e6d8ac049 92 Gene3D G3DSA:2.40.50.140 13 92 3.3E-32 T 13-10-2018 RAM_03505 49983a98b0f9f4461b530a8e6d8ac049 92 SUPERFAMILY SSF50249 14 91 2.06E-29 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_03505 49983a98b0f9f4461b530a8e6d8ac049 92 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 14 85 4.5E-33 T 13-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_03505 49983a98b0f9f4461b530a8e6d8ac049 92 ProSitePatterns PS00056 Ribosomal protein S17 signature. 65 77 - T 13-10-2018 IPR019979 Ribosomal protein S17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_42430 4a9894c955b9b57b4ea1b0dd8c1c82f4 187 SUPERFAMILY SSF53335 23 178 2.66E-26 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_42430 4a9894c955b9b57b4ea1b0dd8c1c82f4 187 Gene3D G3DSA:3.40.50.150 5 186 2.3E-26 T 13-10-2018 RAM_42430 4a9894c955b9b57b4ea1b0dd8c1c82f4 187 Pfam PF08241 Methyltransferase domain 36 129 6.2E-16 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 RAM_00945 afe632c82f9d0314cbcd731f8aa293a5 116 Gene3D G3DSA:3.30.2010.20 2 115 3.2E-43 T 13-10-2018 IPR038555 Zincin-like metallopeptidase superfamily RAM_00945 afe632c82f9d0314cbcd731f8aa293a5 116 SUPERFAMILY SSF55486 4 115 4.0E-40 T 13-10-2018 RAM_00945 afe632c82f9d0314cbcd731f8aa293a5 116 Pfam PF06262 Zincin-like metallopeptidase 29 115 3.4E-33 T 13-10-2018 IPR010428 Zincin-like metallopeptidase RAM_43175 355848e947924d4e02ae713765917d7e 261 Gene3D G3DSA:1.10.3720.10 1 251 1.1E-56 T 13-10-2018 IPR035906 MetI-like superfamily RAM_43175 355848e947924d4e02ae713765917d7e 261 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 88 253 8.4E-21 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_43175 355848e947924d4e02ae713765917d7e 261 SUPERFAMILY SSF161098 2 257 1.01E-56 T 13-10-2018 IPR035906 MetI-like superfamily RAM_25715 324c898508a1236662707d81942df6e6 107 Pfam PF01527 Transposase 4 79 1.3E-13 T 13-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 RAM_25715 324c898508a1236662707d81942df6e6 107 Gene3D G3DSA:1.10.10.60 10 95 1.2E-7 T 13-10-2018 RAM_25715 324c898508a1236662707d81942df6e6 107 SUPERFAMILY SSF46689 5 97 3.4E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_36880 23cd14b65e6799bd78d0c1bc039a23fd 546 SUPERFAMILY SSF53901 425 535 9.36E-14 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_36880 23cd14b65e6799bd78d0c1bc039a23fd 546 SUPERFAMILY SSF50249 2 125 7.37E-27 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_36880 23cd14b65e6799bd78d0c1bc039a23fd 546 Pfam PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) 17 52 4.4E-9 T 13-10-2018 IPR022002 Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal RAM_36880 23cd14b65e6799bd78d0c1bc039a23fd 546 Gene3D G3DSA:3.40.47.10 159 544 8.1E-77 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_36880 23cd14b65e6799bd78d0c1bc039a23fd 546 Pfam PF01796 DUF35 OB-fold domain, acyl-CoA-associated 57 119 2.7E-14 T 13-10-2018 IPR002878 Domain of unknown function DUF35, OB-fold, C-terminal RAM_36880 23cd14b65e6799bd78d0c1bc039a23fd 546 SUPERFAMILY SSF53901 166 391 9.61E-15 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_10030 16df57fb1d6230e2cd2e32bd6341c5b5 487 Pfam PF01148 Cytidylyltransferase family 230 483 3.4E-53 T 13-10-2018 RAM_10030 16df57fb1d6230e2cd2e32bd6341c5b5 487 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 442 468 - T 13-10-2018 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7817 RAM_38350 8041b48badc1843cdbe750eb4a7d2310 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 9.6E-35 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_38350 8041b48badc1843cdbe750eb4a7d2310 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 9.6E-35 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_38350 8041b48badc1843cdbe750eb4a7d2310 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 210 230 9.6E-35 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_38350 8041b48badc1843cdbe750eb4a7d2310 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 9.6E-35 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_38350 8041b48badc1843cdbe750eb4a7d2310 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 14 31 9.6E-35 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_38350 8041b48badc1843cdbe750eb4a7d2310 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 9.6E-35 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_38350 8041b48badc1843cdbe750eb4a7d2310 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 3.9E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_38350 8041b48badc1843cdbe750eb4a7d2310 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 3.9E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_38350 8041b48badc1843cdbe750eb4a7d2310 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 3.9E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_38350 8041b48badc1843cdbe750eb4a7d2310 252 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 19 247 2.7E-59 T 13-10-2018 RAM_38350 8041b48badc1843cdbe750eb4a7d2310 252 SUPERFAMILY SSF51735 12 248 1.05E-74 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_38350 8041b48badc1843cdbe750eb4a7d2310 252 Gene3D G3DSA:3.40.50.720 3 248 1.2E-72 T 13-10-2018 RAM_02605 a1a1fb8c752b0adef97e6e5e72fd41fc 333 ProSitePatterns PS00455 Putative AMP-binding domain signature. 14 25 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_02605 a1a1fb8c752b0adef97e6e5e72fd41fc 333 Pfam PF13193 AMP-binding enzyme C-terminal domain 247 317 1.3E-17 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_02605 a1a1fb8c752b0adef97e6e5e72fd41fc 333 Gene3D G3DSA:3.40.50.12780 1 234 8.5E-49 T 13-10-2018 RAM_02605 a1a1fb8c752b0adef97e6e5e72fd41fc 333 SUPERFAMILY SSF56801 7 329 6.8E-76 T 13-10-2018 RAM_02605 a1a1fb8c752b0adef97e6e5e72fd41fc 333 Pfam PF00501 AMP-binding enzyme 6 237 4.9E-33 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_02605 a1a1fb8c752b0adef97e6e5e72fd41fc 333 Gene3D G3DSA:3.30.300.310 235 330 9.7E-24 T 13-10-2018 RAM_14985 05cc8a9c8c7058087b3125ae9d9c832a 147 SMART SM00347 28 126 9.6E-20 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_14985 05cc8a9c8c7058087b3125ae9d9c832a 147 Gene3D G3DSA:1.10.10.10 2 140 3.4E-36 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_14985 05cc8a9c8c7058087b3125ae9d9c832a 147 SUPERFAMILY SSF46785 5 138 1.57E-35 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_14985 05cc8a9c8c7058087b3125ae9d9c832a 147 Pfam PF01047 MarR family 35 93 1.9E-15 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_14985 05cc8a9c8c7058087b3125ae9d9c832a 147 PRINTS PR00598 Bacterial regulatory protein MarR family signature 88 104 2.4E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_14985 05cc8a9c8c7058087b3125ae9d9c832a 147 PRINTS PR00598 Bacterial regulatory protein MarR family signature 52 68 2.4E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_14985 05cc8a9c8c7058087b3125ae9d9c832a 147 PRINTS PR00598 Bacterial regulatory protein MarR family signature 69 84 2.4E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_30765 ccbd089ab1d1af00f5e0921756b7e0f3 234 Gene3D G3DSA:3.40.50.300 1 223 3.6E-77 T 13-10-2018 RAM_30765 ccbd089ab1d1af00f5e0921756b7e0f3 234 SUPERFAMILY SSF52540 1 217 8.01E-36 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_30765 ccbd089ab1d1af00f5e0921756b7e0f3 234 Hamap MF_00238 Cytidylate kinase [cmk]. 1 223 29.539 T 13-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 RAM_30765 ccbd089ab1d1af00f5e0921756b7e0f3 234 TIGRFAM TIGR00017 cmk: cytidylate kinase 2 213 1.1E-64 T 13-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 RAM_30765 ccbd089ab1d1af00f5e0921756b7e0f3 234 Pfam PF02224 Cytidylate kinase 2 218 7.8E-70 T 13-10-2018 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 RAM_23730 6a46697bef23c71a257708d32c55313b 299 SUPERFAMILY SSF52317 2 159 1.83E-38 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_23730 6a46697bef23c71a257708d32c55313b 299 Gene3D G3DSA:3.40.50.10740 4 161 8.5E-44 T 13-10-2018 IPR027478 Murein tetrapeptide carboxypeptidase, N-terminal RAM_23730 6a46697bef23c71a257708d32c55313b 299 SUPERFAMILY SSF141986 141 289 1.07E-35 T 13-10-2018 IPR027461 LD-carboxypeptidase A, C-terminal domain superfamily RAM_23730 6a46697bef23c71a257708d32c55313b 299 PIRSF PIRSF028757 1 297 1.7E-64 T 13-10-2018 IPR003507 Peptidase family S66 RAM_23730 6a46697bef23c71a257708d32c55313b 299 Pfam PF02016 LD-carboxypeptidase 13 284 1.2E-64 T 13-10-2018 IPR003507 Peptidase family S66 RAM_23730 6a46697bef23c71a257708d32c55313b 299 Gene3D G3DSA:3.50.30.60 165 291 8.3E-37 T 13-10-2018 IPR027461 LD-carboxypeptidase A, C-terminal domain superfamily RAM_33220 b0c6664c407a318ff903d354fb59f7c0 573 SUPERFAMILY SSF49785 357 538 5.53E-25 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_33220 b0c6664c407a318ff903d354fb59f7c0 573 Gene3D G3DSA:3.40.50.1820 230 359 7.9E-12 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_33220 b0c6664c407a318ff903d354fb59f7c0 573 Gene3D G3DSA:2.60.120.260 360 555 3.8E-25 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_33220 b0c6664c407a318ff903d354fb59f7c0 573 Gene3D G3DSA:1.10.3020.10 187 208 1.8E-35 T 13-10-2018 RAM_33220 b0c6664c407a318ff903d354fb59f7c0 573 Gene3D G3DSA:3.40.50.1820 47 186 1.8E-35 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_33220 b0c6664c407a318ff903d354fb59f7c0 573 TIGRFAM TIGR00976 /NonD: hydrolase CocE/NonD family protein 48 196 5.2E-29 T 13-10-2018 IPR005674 CocE/Serine esterase GO:0016787 RAM_33220 b0c6664c407a318ff903d354fb59f7c0 573 SUPERFAMILY SSF53474 44 365 1.69E-33 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_33220 b0c6664c407a318ff903d354fb59f7c0 573 SMART SM00939 328 546 3.1E-24 T 13-10-2018 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 RAM_33220 b0c6664c407a318ff903d354fb59f7c0 573 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 52 315 1.3E-31 T 13-10-2018 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 RAM_33220 b0c6664c407a318ff903d354fb59f7c0 573 Pfam PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain 345 525 1.7E-21 T 13-10-2018 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 RAM_07330 edef153ffbf0d2ad182c9fdc32be3576 169 Gene3D G3DSA:1.10.357.10 1 169 1.5E-45 T 13-10-2018 RAM_07330 edef153ffbf0d2ad182c9fdc32be3576 169 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 45 3.0E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_07330 edef153ffbf0d2ad182c9fdc32be3576 169 SUPERFAMILY SSF48498 65 165 8.53E-12 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_07330 edef153ffbf0d2ad182c9fdc32be3576 169 SUPERFAMILY SSF46689 7 62 2.29E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_04550 0b2f18557b099148d51db80e7767372e 523 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 17 39 9.9E-5 T 13-10-2018 RAM_04550 0b2f18557b099148d51db80e7767372e 523 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 159 168 9.9E-5 T 13-10-2018 RAM_04550 0b2f18557b099148d51db80e7767372e 523 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 196 221 9.9E-5 T 13-10-2018 RAM_04550 0b2f18557b099148d51db80e7767372e 523 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 18 37 1.5E-9 T 13-10-2018 RAM_04550 0b2f18557b099148d51db80e7767372e 523 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 196 214 1.5E-9 T 13-10-2018 RAM_04550 0b2f18557b099148d51db80e7767372e 523 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 322 344 1.5E-9 T 13-10-2018 RAM_04550 0b2f18557b099148d51db80e7767372e 523 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 156 174 1.5E-9 T 13-10-2018 RAM_04550 0b2f18557b099148d51db80e7767372e 523 SUPERFAMILY SSF51905 16 360 2.59E-35 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_04550 0b2f18557b099148d51db80e7767372e 523 Pfam PF13738 Pyridine nucleotide-disulphide oxidoreductase 19 341 2.4E-54 T 13-10-2018 RAM_04550 0b2f18557b099148d51db80e7767372e 523 Gene3D G3DSA:3.50.50.60 168 299 6.8E-51 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_04550 0b2f18557b099148d51db80e7767372e 523 Gene3D G3DSA:3.50.50.60 20 376 6.8E-51 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_17475 2b0367a4d963ef5d1702e9e2f220020a 293 SUPERFAMILY SSF51679 4 291 5.15E-49 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_17475 2b0367a4d963ef5d1702e9e2f220020a 293 Gene3D G3DSA:3.20.20.30 6 292 3.1E-53 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_17475 2b0367a4d963ef5d1702e9e2f220020a 293 Pfam PF00296 Luciferase-like monooxygenase 3 221 6.1E-39 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_17475 2b0367a4d963ef5d1702e9e2f220020a 293 TIGRFAM TIGR03854 F420_MSMEG_3544: probable F420-dependent oxidoreductase, MSMEG_3544 family 5 293 1.4E-124 T 13-10-2018 IPR022402 F420-dependent oxidoreductase-predicted, MSMEG3544 RAM_38100 c103b87c10e04f02a82160d9a0ef3f13 351 SUPERFAMILY SSF52266 142 350 7.33E-37 T 13-10-2018 RAM_38100 c103b87c10e04f02a82160d9a0ef3f13 351 SUPERFAMILY SSF49785 35 136 1.19E-7 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_38100 c103b87c10e04f02a82160d9a0ef3f13 351 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 144 328 4.8E-13 T 13-10-2018 IPR013830 SGNH hydrolase-type esterase domain RAM_38100 c103b87c10e04f02a82160d9a0ef3f13 351 Gene3D G3DSA:3.40.50.1110 141 351 4.7E-50 T 13-10-2018 IPR036514 SGNH hydrolase superfamily RAM_40775 0eed5d87aacec67b1b91ceb42d96e291 164 SUPERFAMILY SSF54593 8 127 1.17E-22 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_40775 0eed5d87aacec67b1b91ceb42d96e291 164 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 11 124 1.8E-8 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RAM_40775 0eed5d87aacec67b1b91ceb42d96e291 164 Gene3D G3DSA:3.10.180.10 6 139 2.1E-26 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_12500 719da004f11c487e98fe63855d1441e1 162 Pfam PF16473 3' exoribonuclease, RNase T-like 2 155 1.0E-18 T 13-10-2018 IPR033390 3'-5' exoribonuclease Rv2179c-like domain RAM_12500 719da004f11c487e98fe63855d1441e1 162 Gene3D G3DSA:3.30.420.10 1 160 1.8E-64 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RAM_12500 719da004f11c487e98fe63855d1441e1 162 Hamap MF_00977 3'-5' exoribonuclease. 1 159 43.166 T 13-10-2018 IPR030853 3-5 exoribonuclease, actinobacteria GO:0000287|GO:0008408 RAM_15135 51f3a1a3c946e21f7bbc99d69191f8cb 305 SUPERFAMILY SSF53067 126 295 5.72E-28 T 13-10-2018 RAM_15135 51f3a1a3c946e21f7bbc99d69191f8cb 305 Gene3D G3DSA:3.30.420.150 105 282 1.9E-58 T 13-10-2018 RAM_15135 51f3a1a3c946e21f7bbc99d69191f8cb 305 SUPERFAMILY SSF53067 1 122 2.03E-23 T 13-10-2018 RAM_15135 51f3a1a3c946e21f7bbc99d69191f8cb 305 Gene3D G3DSA:3.30.420.40 3 289 1.9E-58 T 13-10-2018 RAM_15135 51f3a1a3c946e21f7bbc99d69191f8cb 305 Pfam PF02541 Ppx/GppA phosphatase family 24 294 1.2E-48 T 13-10-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 RAM_24030 8ff8892702fdd381cc47fd84bc27043d 146 Gene3D G3DSA:3.30.530.20 1 145 2.9E-40 T 13-10-2018 IPR023393 START-like domain superfamily RAM_24030 8ff8892702fdd381cc47fd84bc27043d 146 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 11 129 4.7E-13 T 13-10-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like RAM_24030 8ff8892702fdd381cc47fd84bc27043d 146 SUPERFAMILY SSF55961 11 135 6.11E-31 T 13-10-2018 RAM_00100 0fd24bcff5294d7a93026ab331628805 1102 Gene3D G3DSA:3.40.50.300 225 388 1.3E-6 T 13-10-2018 RAM_00100 0fd24bcff5294d7a93026ab331628805 1102 Gene3D G3DSA:1.25.10.110 966 1044 8.1E-6 T 13-10-2018 RAM_00100 0fd24bcff5294d7a93026ab331628805 1102 Pfam PF05729 NACHT domain 251 413 2.5E-9 T 13-10-2018 IPR007111 NACHT nucleoside triphosphatase RAM_00100 0fd24bcff5294d7a93026ab331628805 1102 SUPERFAMILY SSF48371 794 1068 4.43E-20 T 13-10-2018 IPR016024 Armadillo-type fold RAM_00100 0fd24bcff5294d7a93026ab331628805 1102 Pfam PF13646 HEAT repeats 951 1040 1.6E-7 T 13-10-2018 RAM_00100 0fd24bcff5294d7a93026ab331628805 1102 SUPERFAMILY SSF52540 209 410 3.87E-10 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_00100 0fd24bcff5294d7a93026ab331628805 1102 Gene3D G3DSA:1.25.10.10 772 965 3.3E-8 T 13-10-2018 IPR011989 Armadillo-like helical RAM_04125 99364f69aeb51d9cd468361b6d66d6c1 522 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 11 522 2.3E-174 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RAM_04125 99364f69aeb51d9cd468361b6d66d6c1 522 Gene3D G3DSA:3.40.140.20 218 368 1.0E-59 T 13-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RAM_04125 99364f69aeb51d9cd468361b6d66d6c1 522 SMART SM00851 22 136 2.8E-48 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain RAM_04125 99364f69aeb51d9cd468361b6d66d6c1 522 SUPERFAMILY SSF52335 10 199 8.37E-64 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily RAM_04125 99364f69aeb51d9cd468361b6d66d6c1 522 Pfam PF01808 AICARFT/IMPCHase bienzyme 141 456 2.1E-114 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RAM_04125 99364f69aeb51d9cd468361b6d66d6c1 522 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 10 522 42.585 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RAM_04125 99364f69aeb51d9cd468361b6d66d6c1 522 PIRSF PIRSF000414 6 522 6.4E-197 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RAM_04125 99364f69aeb51d9cd468361b6d66d6c1 522 SMART SM00798 141 457 2.0E-185 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RAM_04125 99364f69aeb51d9cd468361b6d66d6c1 522 SUPERFAMILY SSF53927 221 522 1.7E-118 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 RAM_04125 99364f69aeb51d9cd468361b6d66d6c1 522 Pfam PF02142 MGS-like domain 22 135 8.0E-25 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain RAM_04125 99364f69aeb51d9cd468361b6d66d6c1 522 Gene3D G3DSA:3.40.140.20 393 522 2.6E-53 T 13-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RAM_04125 99364f69aeb51d9cd468361b6d66d6c1 522 Gene3D G3DSA:3.40.50.1380 1 204 1.2E-84 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily RAM_23540 2e82554d73fd5ed0f8755b4fb5064fff 138 Pfam PF02515 CoA-transferase family III 6 137 1.1E-49 T 13-10-2018 IPR003673 CoA-transferase family III GO:0003824 RAM_23540 2e82554d73fd5ed0f8755b4fb5064fff 138 SUPERFAMILY SSF89796 4 137 2.22E-52 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily RAM_23540 2e82554d73fd5ed0f8755b4fb5064fff 138 Gene3D G3DSA:3.40.50.10540 3 138 1.0E-54 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily RAM_28455 131872580d5341c25c0a041142c7040c 245 Gene3D G3DSA:3.30.450.40 24 166 2.3E-14 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_28455 131872580d5341c25c0a041142c7040c 245 Pfam PF03861 ANTAR domain 189 230 5.5E-7 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 RAM_28455 131872580d5341c25c0a041142c7040c 245 SMART SM01012 152 230 1.3E-5 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 RAM_28455 131872580d5341c25c0a041142c7040c 245 Pfam PF13185 GAF domain 25 161 3.0E-8 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_28455 131872580d5341c25c0a041142c7040c 245 SUPERFAMILY SSF55781 26 164 4.42E-16 T 13-10-2018 RAM_01975 f4a662577346a4e8c6985f4a613c4b8f 148 SUPERFAMILY SSF50475 2 137 7.3E-19 T 13-10-2018 RAM_01975 f4a662577346a4e8c6985f4a613c4b8f 148 Pfam PF12900 Pyridoxamine 5'-phosphate oxidase 7 87 2.2E-6 T 13-10-2018 IPR024747 Pyridoxamine 5'-phosphate oxidase-related RAM_01975 f4a662577346a4e8c6985f4a613c4b8f 148 Gene3D G3DSA:2.30.110.10 1 138 1.4E-21 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_45200 0062cd96350f9bd7c0b54691822ae5d2 419 Gene3D G3DSA:3.90.1150.140 257 403 1.0E-122 T 13-10-2018 RAM_45200 0062cd96350f9bd7c0b54691822ae5d2 419 PIRSF PIRSF016719 5 419 2.5E-127 T 13-10-2018 IPR008302 Uncharacterised conserved protein UCP016719 RAM_45200 0062cd96350f9bd7c0b54691822ae5d2 419 Gene3D G3DSA:3.40.50.12170 40 418 1.0E-122 T 13-10-2018 RAM_45200 0062cd96350f9bd7c0b54691822ae5d2 419 Pfam PF07075 Protein of unknown function (DUF1343) 58 418 6.2E-123 T 13-10-2018 IPR008302 Uncharacterised conserved protein UCP016719 RAM_16495 708ee7a1b420a4247417a81c9c9ca896 301 Gene3D G3DSA:1.10.3720.10 50 296 1.8E-67 T 13-10-2018 IPR035906 MetI-like superfamily RAM_16495 708ee7a1b420a4247417a81c9c9ca896 301 SUPERFAMILY SSF160964 10 70 8.5E-7 T 13-10-2018 RAM_16495 708ee7a1b420a4247417a81c9c9ca896 301 SUPERFAMILY SSF161098 52 285 9.94E-57 T 13-10-2018 IPR035906 MetI-like superfamily RAM_16495 708ee7a1b420a4247417a81c9c9ca896 301 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 90 293 3.1E-16 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_22390 8f5d01d04a93ba6f1db04f54e868c199 347 Gene3D G3DSA:3.40.50.2300 97 335 2.2E-76 T 13-10-2018 RAM_22390 8f5d01d04a93ba6f1db04f54e868c199 347 Gene3D G3DSA:1.10.260.40 12 78 4.6E-25 T 13-10-2018 RAM_22390 8f5d01d04a93ba6f1db04f54e868c199 347 Pfam PF13377 Periplasmic binding protein-like domain 187 344 2.0E-36 T 13-10-2018 RAM_22390 8f5d01d04a93ba6f1db04f54e868c199 347 Pfam PF00356 Bacterial regulatory proteins, lacI family 23 67 7.3E-19 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_22390 8f5d01d04a93ba6f1db04f54e868c199 347 Gene3D G3DSA:3.40.50.2300 178 339 2.2E-76 T 13-10-2018 RAM_22390 8f5d01d04a93ba6f1db04f54e868c199 347 SUPERFAMILY SSF47413 20 78 2.29E-19 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_22390 8f5d01d04a93ba6f1db04f54e868c199 347 ProSitePatterns PS00356 LacI-type HTH domain signature. 23 41 - T 13-10-2018 RAM_22390 8f5d01d04a93ba6f1db04f54e868c199 347 SUPERFAMILY SSF53822 77 331 5.89E-59 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_22390 8f5d01d04a93ba6f1db04f54e868c199 347 SMART SM00354 20 90 3.3E-29 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_23380 023e21d967feba4fe2485b407f0455eb 289 Pfam PF01513 ATP-NAD kinase 70 198 1.4E-6 T 13-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 RAM_23380 023e21d967feba4fe2485b407f0455eb 289 SUPERFAMILY SSF111331 73 202 8.17E-19 T 13-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily RAM_13040 dd1954e5862ad4ac640fc4bea3b30ae9 223 ProDom PD068376 ORF2 SECRETED GLNII PRECURSOR SIGNAL 48 223 6.0E-37 T 13-10-2018 RAM_12940 5ea09f46d8119f194071a88790ecc2a4 399 PIRSF PIRSF005962 2 397 1.7E-108 T 13-10-2018 IPR017439 Amidohydrolase GO:0016787 RAM_12940 5ea09f46d8119f194071a88790ecc2a4 399 SUPERFAMILY SSF53187 4 394 8.68E-71 T 13-10-2018 RAM_12940 5ea09f46d8119f194071a88790ecc2a4 399 Pfam PF07687 Peptidase dimerisation domain 193 282 2.9E-10 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain RAM_12940 5ea09f46d8119f194071a88790ecc2a4 399 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 16 379 4.8E-95 T 13-10-2018 IPR017439 Amidohydrolase GO:0016787 RAM_12940 5ea09f46d8119f194071a88790ecc2a4 399 SUPERFAMILY SSF55031 192 302 2.69E-30 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain RAM_12940 5ea09f46d8119f194071a88790ecc2a4 399 Gene3D G3DSA:3.40.630.10 16 379 8.0E-125 T 13-10-2018 RAM_12940 5ea09f46d8119f194071a88790ecc2a4 399 Gene3D G3DSA:3.30.70.360 187 301 8.0E-125 T 13-10-2018 RAM_12940 5ea09f46d8119f194071a88790ecc2a4 399 Pfam PF01546 Peptidase family M20/M25/M40 74 390 3.7E-35 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 RAM_32910 a9fb4bb4fc1e657a4e706a1d156251a4 194 Gene3D G3DSA:1.10.10.60 6 52 3.3E-17 T 13-10-2018 RAM_32910 a9fb4bb4fc1e657a4e706a1d156251a4 194 Gene3D G3DSA:1.10.357.10 53 184 1.0E-29 T 13-10-2018 RAM_32910 a9fb4bb4fc1e657a4e706a1d156251a4 194 SUPERFAMILY SSF46689 3 76 3.39E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_32910 a9fb4bb4fc1e657a4e706a1d156251a4 194 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 1.4E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_32910 a9fb4bb4fc1e657a4e706a1d156251a4 194 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 1.4E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_32910 a9fb4bb4fc1e657a4e706a1d156251a4 194 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 60 5.5E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_32910 a9fb4bb4fc1e657a4e706a1d156251a4 194 SUPERFAMILY SSF48498 79 180 1.08E-18 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_06055 5acd03158ab98c07f4725feaba00e880 468 Pfam PF00773 RNB domain 46 352 8.2E-48 T 13-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 RAM_06055 5acd03158ab98c07f4725feaba00e880 468 SMART SM00955 46 364 7.9E-68 T 13-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 RAM_06055 5acd03158ab98c07f4725feaba00e880 468 SUPERFAMILY SSF50249 10 408 1.09E-91 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_36110 efbdd41447865a1279bd368e97c8c9fc 290 SUPERFAMILY SSF51735 1 277 1.74E-38 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_36110 efbdd41447865a1279bd368e97c8c9fc 290 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 210 2.9E-15 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 RAM_36110 efbdd41447865a1279bd368e97c8c9fc 290 Gene3D G3DSA:3.40.50.720 2 287 2.1E-35 T 13-10-2018 RAM_41865 8fdd03f2c9b1d1f37920a28f8e642b62 388 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 181 376 3.3E-20 T 13-10-2018 IPR013830 SGNH hydrolase-type esterase domain RAM_41865 8fdd03f2c9b1d1f37920a28f8e642b62 388 SUPERFAMILY SSF52266 179 386 2.83E-35 T 13-10-2018 RAM_41865 8fdd03f2c9b1d1f37920a28f8e642b62 388 Gene3D G3DSA:3.40.50.1110 172 386 1.1E-26 T 13-10-2018 IPR036514 SGNH hydrolase superfamily RAM_24565 778ffbd58dbb7a8a905293e4d65536b4 216 Pfam PF00072 Response regulator receiver domain 7 118 9.7E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_24565 778ffbd58dbb7a8a905293e4d65536b4 216 SMART SM00448 5 118 8.2E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_24565 778ffbd58dbb7a8a905293e4d65536b4 216 SUPERFAMILY SSF46894 141 212 1.94E-20 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_24565 778ffbd58dbb7a8a905293e4d65536b4 216 Gene3D G3DSA:3.40.50.12740 5 212 1.9E-67 T 13-10-2018 RAM_24565 778ffbd58dbb7a8a905293e4d65536b4 216 ProSitePatterns PS00622 LuxR-type HTH domain signature. 167 194 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_24565 778ffbd58dbb7a8a905293e4d65536b4 216 SUPERFAMILY SSF52172 4 135 3.98E-33 T 13-10-2018 IPR011006 CheY-like superfamily RAM_24565 778ffbd58dbb7a8a905293e4d65536b4 216 Pfam PF00196 Bacterial regulatory proteins, luxR family 152 206 1.6E-18 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_24565 778ffbd58dbb7a8a905293e4d65536b4 216 SMART SM00421 150 207 3.0E-24 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_24565 778ffbd58dbb7a8a905293e4d65536b4 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 153 167 2.2E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_24565 778ffbd58dbb7a8a905293e4d65536b4 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 167 183 2.2E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_24565 778ffbd58dbb7a8a905293e4d65536b4 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 183 195 2.2E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_17110 469ab2cc4968f7a5be72ef24c8bd4d76 666 SUPERFAMILY SSF82866 136 321 1.7E-27 T 13-10-2018 RAM_17110 469ab2cc4968f7a5be72ef24c8bd4d76 666 SUPERFAMILY SSF82866 455 649 9.94E-24 T 13-10-2018 RAM_17110 469ab2cc4968f7a5be72ef24c8bd4d76 666 Gene3D G3DSA:1.20.1640.10 150 326 2.3E-5 T 13-10-2018 RAM_17110 469ab2cc4968f7a5be72ef24c8bd4d76 666 Pfam PF03176 MMPL family 44 346 1.4E-50 T 13-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 RAM_17110 469ab2cc4968f7a5be72ef24c8bd4d76 666 Pfam PF03176 MMPL family 465 655 9.8E-29 T 13-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 RAM_43475 594553a290eb9df713bb1c419f918cb5 281 Pfam PF11268 Protein of unknown function (DUF3071) 1 169 2.2E-61 T 13-10-2018 IPR021421 Protein of unknown function DUF3071 RAM_27020 649338ca2e3fe0841e53cb75faf4654f 251 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 3 242 34.588 T 13-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_27020 649338ca2e3fe0841e53cb75faf4654f 251 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 240 3.0E-97 T 13-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_27020 649338ca2e3fe0841e53cb75faf4654f 251 Gene3D G3DSA:3.30.70.980 136 208 4.8E-53 T 13-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_27020 649338ca2e3fe0841e53cb75faf4654f 251 SUPERFAMILY SSF75625 3 249 1.1E-88 T 13-10-2018 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_27020 649338ca2e3fe0841e53cb75faf4654f 251 Pfam PF01709 Transcriptional regulator 5 240 2.2E-89 T 13-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_27020 649338ca2e3fe0841e53cb75faf4654f 251 Gene3D G3DSA:1.10.10.200 1 82 3.1E-30 T 13-10-2018 IPR017856 Integrase-like, N-terminal RAM_27020 649338ca2e3fe0841e53cb75faf4654f 251 Gene3D G3DSA:3.30.70.980 88 239 4.8E-53 T 13-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_05685 c55dabe71cca8226df43a69a1cfc255a 391 Gene3D G3DSA:3.40.50.720 14 264 1.5E-85 T 13-10-2018 RAM_05685 c55dabe71cca8226df43a69a1cfc255a 391 SMART SM00450 289 386 1.2E-26 T 13-10-2018 IPR001763 Rhodanese-like domain RAM_05685 c55dabe71cca8226df43a69a1cfc255a 391 Pfam PF00581 Rhodanese-like domain 289 382 1.0E-13 T 13-10-2018 IPR001763 Rhodanese-like domain RAM_05685 c55dabe71cca8226df43a69a1cfc255a 391 Pfam PF00899 ThiF family 22 258 1.7E-61 T 13-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 RAM_05685 c55dabe71cca8226df43a69a1cfc255a 391 Gene3D G3DSA:3.40.250.10 273 388 9.9E-26 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily RAM_05685 c55dabe71cca8226df43a69a1cfc255a 391 SUPERFAMILY SSF69572 8 358 1.19E-98 T 13-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 RAM_30695 fc545b3232bdde37acf05864be276fcd 189 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 56 1.4E-18 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_30695 fc545b3232bdde37acf05864be276fcd 189 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 10 23 1.7E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_30695 fc545b3232bdde37acf05864be276fcd 189 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 31 54 1.7E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_30695 fc545b3232bdde37acf05864be276fcd 189 ProSitePatterns PS01081 TetR-type HTH domain signature. 22 53 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RAM_30695 fc545b3232bdde37acf05864be276fcd 189 SUPERFAMILY SSF48498 81 187 4.52E-5 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_30695 fc545b3232bdde37acf05864be276fcd 189 Gene3D G3DSA:1.10.357.10 6 189 7.8E-46 T 13-10-2018 RAM_30695 fc545b3232bdde37acf05864be276fcd 189 SUPERFAMILY SSF46689 2 76 5.99E-21 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_04880 a044dddad16de17633b4dbab5325999a 332 SUPERFAMILY SSF46689 225 271 3.53E-9 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_04880 a044dddad16de17633b4dbab5325999a 332 Pfam PF12833 Helix-turn-helix domain 243 321 7.4E-21 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_04880 a044dddad16de17633b4dbab5325999a 332 SMART SM00342 237 320 8.0E-27 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_04880 a044dddad16de17633b4dbab5325999a 332 SUPERFAMILY SSF46689 274 324 3.47E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_04880 a044dddad16de17633b4dbab5325999a 332 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 274 316 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RAM_04880 a044dddad16de17633b4dbab5325999a 332 Gene3D G3DSA:3.40.50.880 7 211 6.0E-53 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_04880 a044dddad16de17633b4dbab5325999a 332 SUPERFAMILY SSF52317 10 203 2.4E-44 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_04880 a044dddad16de17633b4dbab5325999a 332 Gene3D G3DSA:1.10.10.60 221 326 1.2E-25 T 13-10-2018 RAM_04880 a044dddad16de17633b4dbab5325999a 332 Pfam PF01965 DJ-1/PfpI family 11 181 7.2E-15 T 13-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 RAM_41915 fb9f085d9eb18831e00bb686419ce066 369 Pfam PF00999 Sodium/hydrogen exchanger family 13 230 6.1E-9 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 RAM_17735 507ac0490e93afa30b653c7543ea4ceb 333 Pfam PF03773 Predicted permease 52 182 3.2E-30 T 13-10-2018 IPR005524 Predicted permease DUF318 RAM_17735 507ac0490e93afa30b653c7543ea4ceb 333 Pfam PF03773 Predicted permease 217 328 1.9E-11 T 13-10-2018 IPR005524 Predicted permease DUF318 RAM_46940 7fee9189c55bf8180a8db160b45a42da 259 Gene3D G3DSA:3.40.50.720 6 246 1.3E-59 T 13-10-2018 RAM_46940 7fee9189c55bf8180a8db160b45a42da 259 Pfam PF00106 short chain dehydrogenase 10 191 1.7E-41 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_46940 7fee9189c55bf8180a8db160b45a42da 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 1.0E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_46940 7fee9189c55bf8180a8db160b45a42da 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 1.0E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_46940 7fee9189c55bf8180a8db160b45a42da 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 1.0E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_46940 7fee9189c55bf8180a8db160b45a42da 259 PIRSF PIRSF000126 1 258 1.6E-66 T 13-10-2018 RAM_46940 7fee9189c55bf8180a8db160b45a42da 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 3.9E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_46940 7fee9189c55bf8180a8db160b45a42da 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 3.9E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_46940 7fee9189c55bf8180a8db160b45a42da 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 3.9E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_46940 7fee9189c55bf8180a8db160b45a42da 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 3.9E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_46940 7fee9189c55bf8180a8db160b45a42da 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 3.9E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_46940 7fee9189c55bf8180a8db160b45a42da 259 SUPERFAMILY SSF51735 8 235 6.44E-54 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_44995 b0173abca4dab66187dd0d9c34f74523 162 SUPERFAMILY SSF55811 15 138 1.62E-18 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RAM_44995 b0173abca4dab66187dd0d9c34f74523 162 Pfam PF00293 NUDIX domain 16 129 3.8E-14 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RAM_44995 b0173abca4dab66187dd0d9c34f74523 162 ProSitePatterns PS00893 Nudix box signature. 47 68 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RAM_44995 b0173abca4dab66187dd0d9c34f74523 162 Gene3D G3DSA:3.90.79.10 7 148 5.3E-19 T 13-10-2018 RAM_47010 5fd82ba190083b15c323be5f9ab60e4e 624 Gene3D G3DSA:3.30.420.40 5 350 1.3E-146 T 13-10-2018 RAM_47010 5fd82ba190083b15c323be5f9ab60e4e 624 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 168 181 - T 13-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 RAM_47010 5fd82ba190083b15c323be5f9ab60e4e 624 SUPERFAMILY SSF53067 162 356 2.12E-63 T 13-10-2018 RAM_47010 5fd82ba190083b15c323be5f9ab60e4e 624 Gene3D G3DSA:3.30.420.40 162 339 1.3E-146 T 13-10-2018 RAM_47010 5fd82ba190083b15c323be5f9ab60e4e 624 Gene3D G3DSA:2.60.34.10 351 478 4.0E-59 T 13-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 RAM_47010 5fd82ba190083b15c323be5f9ab60e4e 624 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 13-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 RAM_47010 5fd82ba190083b15c323be5f9ab60e4e 624 PRINTS PR00301 70kDa heat shock protein signature 31 43 1.7E-75 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RAM_47010 5fd82ba190083b15c323be5f9ab60e4e 624 PRINTS PR00301 70kDa heat shock protein signature 54 62 1.7E-75 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RAM_47010 5fd82ba190083b15c323be5f9ab60e4e 624 PRINTS PR00301 70kDa heat shock protein signature 307 323 1.7E-75 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RAM_47010 5fd82ba190083b15c323be5f9ab60e4e 624 PRINTS PR00301 70kDa heat shock protein signature 339 359 1.7E-75 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RAM_47010 5fd82ba190083b15c323be5f9ab60e4e 624 PRINTS PR00301 70kDa heat shock protein signature 362 381 1.7E-75 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RAM_47010 5fd82ba190083b15c323be5f9ab60e4e 624 PRINTS PR00301 70kDa heat shock protein signature 443 459 1.7E-75 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RAM_47010 5fd82ba190083b15c323be5f9ab60e4e 624 PRINTS PR00301 70kDa heat shock protein signature 174 184 1.7E-75 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RAM_47010 5fd82ba190083b15c323be5f9ab60e4e 624 PRINTS PR00301 70kDa heat shock protein signature 114 134 1.7E-75 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RAM_47010 5fd82ba190083b15c323be5f9ab60e4e 624 PRINTS PR00301 70kDa heat shock protein signature 3 16 1.7E-75 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RAM_47010 5fd82ba190083b15c323be5f9ab60e4e 624 Gene3D G3DSA:3.90.640.10 200 288 1.3E-146 T 13-10-2018 RAM_47010 5fd82ba190083b15c323be5f9ab60e4e 624 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 4 577 1.7E-277 T 13-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 RAM_47010 5fd82ba190083b15c323be5f9ab60e4e 624 SUPERFAMILY SSF100934 481 587 6.15E-18 T 13-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 RAM_47010 5fd82ba190083b15c323be5f9ab60e4e 624 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 310 324 - T 13-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 RAM_47010 5fd82ba190083b15c323be5f9ab60e4e 624 SUPERFAMILY SSF53067 4 160 2.75E-57 T 13-10-2018 RAM_47010 5fd82ba190083b15c323be5f9ab60e4e 624 SUPERFAMILY SSF100920 358 514 4.45E-60 T 13-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 RAM_47010 5fd82ba190083b15c323be5f9ab60e4e 624 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 620 36.151 T 13-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 RAM_47010 5fd82ba190083b15c323be5f9ab60e4e 624 Pfam PF00012 Hsp70 protein 79 577 3.6E-218 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RAM_47010 5fd82ba190083b15c323be5f9ab60e4e 624 Gene3D G3DSA:1.20.1270.10 481 581 1.0E-31 T 13-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 RAM_11630 3062cfe5cb7c964fbe530e2c885cbfa5 120 Hamap MF_01021 Phosphoribosyl-AMP cyclohydrolase [hisI]. 7 110 30.799 T 13-10-2018 IPR026660 Phosphoribosyl-AMP cyclohydrolase GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 RAM_11630 3062cfe5cb7c964fbe530e2c885cbfa5 120 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 56 108 3.0E-17 T 13-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 RAM_11630 3062cfe5cb7c964fbe530e2c885cbfa5 120 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 33 105 1.9E-35 T 13-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 RAM_11630 3062cfe5cb7c964fbe530e2c885cbfa5 120 SUPERFAMILY SSF141734 7 108 7.98E-46 T 13-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 RAM_11630 3062cfe5cb7c964fbe530e2c885cbfa5 120 Gene3D G3DSA:3.10.20.400 1 97 3.3E-40 T 13-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 RAM_00645 0f9da4c07a6c86156ec21a1f2db1e129 133 Pfam PF15585 Immunity protein 7 2 129 8.5E-51 T 13-10-2018 IPR028965 Immunity protein 7 RAM_23375 909fad81aa2a4eac8db427da76228c23 741 Gene3D G3DSA:1.50.10.10 308 741 8.9E-130 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 RAM_23375 909fad81aa2a4eac8db427da76228c23 741 Pfam PF00723 Glycosyl hydrolases family 15 435 720 6.5E-14 T 13-10-2018 IPR011613 GH15-like domain Reactome: R-HSA-70221 RAM_23375 909fad81aa2a4eac8db427da76228c23 741 SUPERFAMILY SSF74650 26 303 9.89E-65 T 13-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 RAM_23375 909fad81aa2a4eac8db427da76228c23 741 Pfam PF09137 Glucodextranase, domain N 35 300 1.1E-80 T 13-10-2018 IPR015220 Glucodextranase, N-terminal KEGG: 00500+3.2.1.3|MetaCyc: PWY-5941 RAM_23375 909fad81aa2a4eac8db427da76228c23 741 SUPERFAMILY SSF48208 311 735 5.35E-48 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_23375 909fad81aa2a4eac8db427da76228c23 741 Gene3D G3DSA:2.70.98.10 28 304 1.2E-79 T 13-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 RAM_22320 8db749e5dc4a9f4f7fdb7e95d1ea5306 401 Gene3D G3DSA:3.50.50.60 113 236 4.3E-108 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_22320 8db749e5dc4a9f4f7fdb7e95d1ea5306 401 SUPERFAMILY SSF55424 310 400 3.98E-20 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RAM_22320 8db749e5dc4a9f4f7fdb7e95d1ea5306 401 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 4.6E-21 T 13-10-2018 RAM_22320 8db749e5dc4a9f4f7fdb7e95d1ea5306 401 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 229 245 4.6E-21 T 13-10-2018 RAM_22320 8db749e5dc4a9f4f7fdb7e95d1ea5306 401 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 100 118 4.6E-21 T 13-10-2018 RAM_22320 8db749e5dc4a9f4f7fdb7e95d1ea5306 401 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 254 276 4.6E-21 T 13-10-2018 RAM_22320 8db749e5dc4a9f4f7fdb7e95d1ea5306 401 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 145 163 4.6E-21 T 13-10-2018 RAM_22320 8db749e5dc4a9f4f7fdb7e95d1ea5306 401 Gene3D G3DSA:3.30.390.30 318 401 1.4E-17 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RAM_22320 8db749e5dc4a9f4f7fdb7e95d1ea5306 401 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 298 2.1E-59 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAM_22320 8db749e5dc4a9f4f7fdb7e95d1ea5306 401 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 269 276 1.1E-13 T 13-10-2018 RAM_22320 8db749e5dc4a9f4f7fdb7e95d1ea5306 401 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 230 244 1.1E-13 T 13-10-2018 RAM_22320 8db749e5dc4a9f4f7fdb7e95d1ea5306 401 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 3 25 1.1E-13 T 13-10-2018 RAM_22320 8db749e5dc4a9f4f7fdb7e95d1ea5306 401 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 145 170 1.1E-13 T 13-10-2018 RAM_22320 8db749e5dc4a9f4f7fdb7e95d1ea5306 401 Pfam PF14759 Reductase C-terminal 318 400 1.6E-15 T 13-10-2018 IPR028202 Reductase, C-terminal RAM_22320 8db749e5dc4a9f4f7fdb7e95d1ea5306 401 Gene3D G3DSA:3.50.50.60 5 306 4.3E-108 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_22320 8db749e5dc4a9f4f7fdb7e95d1ea5306 401 SUPERFAMILY SSF51905 2 190 5.8E-44 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_22320 8db749e5dc4a9f4f7fdb7e95d1ea5306 401 SUPERFAMILY SSF51905 145 308 8.64E-30 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_10130 18765a2afcbbf881e0b980d70323b3e7 416 Gene3D G3DSA:3.20.20.140 59 359 6.3E-91 T 13-10-2018 RAM_10130 18765a2afcbbf881e0b980d70323b3e7 416 SUPERFAMILY SSF51556 60 370 3.54E-60 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_10130 18765a2afcbbf881e0b980d70323b3e7 416 Gene3D G3DSA:2.30.40.10 14 403 6.3E-91 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_10130 18765a2afcbbf881e0b980d70323b3e7 416 Pfam PF07969 Amidohydrolase family 129 399 1.5E-15 T 13-10-2018 IPR013108 Amidohydrolase 3 RAM_36115 d68be55c99e14e2f2e3f8ca2565aeb5f 190 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 57 3.0E-17 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_36115 d68be55c99e14e2f2e3f8ca2565aeb5f 190 ProSitePatterns PS01081 TetR-type HTH domain signature. 24 55 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RAM_36115 d68be55c99e14e2f2e3f8ca2565aeb5f 190 Gene3D G3DSA:1.10.357.10 1 190 9.8E-51 T 13-10-2018 RAM_36115 d68be55c99e14e2f2e3f8ca2565aeb5f 190 SUPERFAMILY SSF46689 3 80 1.16E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_36115 d68be55c99e14e2f2e3f8ca2565aeb5f 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 5.2E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_36115 d68be55c99e14e2f2e3f8ca2565aeb5f 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 5.2E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_32795 ab6e1514cd246f49ed8240f86249e992 127 Pfam PF13463 Winged helix DNA-binding domain 15 80 1.4E-9 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_32795 ab6e1514cd246f49ed8240f86249e992 127 SUPERFAMILY SSF46785 2 118 2.63E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_32795 ab6e1514cd246f49ed8240f86249e992 127 SMART SM00347 3 107 8.5E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_32795 ab6e1514cd246f49ed8240f86249e992 127 Gene3D G3DSA:1.10.10.10 1 123 3.0E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_46820 e652090528e15e94fba71cfa2e607b16 863 SUPERFAMILY SSF103473 12 515 2.49E-67 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_46820 e652090528e15e94fba71cfa2e607b16 863 Pfam PF07690 Major Facilitator Superfamily 29 432 1.4E-50 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_46820 e652090528e15e94fba71cfa2e607b16 863 SUPERFAMILY SSF49464 690 774 1.49E-13 T 13-10-2018 IPR008969 Carboxypeptidase-like, regulatory domain superfamily RAM_46820 e652090528e15e94fba71cfa2e607b16 863 SUPERFAMILY SSF49464 607 687 3.06E-11 T 13-10-2018 IPR008969 Carboxypeptidase-like, regulatory domain superfamily RAM_46820 e652090528e15e94fba71cfa2e607b16 863 Gene3D G3DSA:2.60.40.1120 607 685 8.4E-9 T 13-10-2018 RAM_46820 e652090528e15e94fba71cfa2e607b16 863 Gene3D G3DSA:2.60.40.1120 690 770 6.0E-13 T 13-10-2018 RAM_46820 e652090528e15e94fba71cfa2e607b16 863 SUPERFAMILY SSF49464 776 859 2.67E-9 T 13-10-2018 IPR008969 Carboxypeptidase-like, regulatory domain superfamily RAM_46820 e652090528e15e94fba71cfa2e607b16 863 PRINTS PR01036 Tetracycline resistance protein TetB signature 118 138 3.5E-5 T 13-10-2018 RAM_46820 e652090528e15e94fba71cfa2e607b16 863 PRINTS PR01036 Tetracycline resistance protein TetB signature 28 52 3.5E-5 T 13-10-2018 RAM_46820 e652090528e15e94fba71cfa2e607b16 863 PRINTS PR01036 Tetracycline resistance protein TetB signature 148 172 3.5E-5 T 13-10-2018 RAM_46820 e652090528e15e94fba71cfa2e607b16 863 Gene3D G3DSA:1.20.1720.10 26 270 1.7E-49 T 13-10-2018 RAM_46820 e652090528e15e94fba71cfa2e607b16 863 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 25 513 4.1E-76 T 13-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 RAM_46820 e652090528e15e94fba71cfa2e607b16 863 Pfam PF13620 Carboxypeptidase regulatory-like domain 777 849 1.7E-10 T 13-10-2018 RAM_46820 e652090528e15e94fba71cfa2e607b16 863 Pfam PF13620 Carboxypeptidase regulatory-like domain 607 685 2.3E-13 T 13-10-2018 RAM_46820 e652090528e15e94fba71cfa2e607b16 863 Pfam PF13620 Carboxypeptidase regulatory-like domain 690 769 1.2E-14 T 13-10-2018 RAM_46820 e652090528e15e94fba71cfa2e607b16 863 Gene3D G3DSA:2.60.40.10 777 858 2.2E-7 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_17190 d6321aed1bab834a2692244909d8fdc9 243 SUPERFAMILY SSF100950 2 239 3.35E-49 T 13-10-2018 IPR037171 NagB/RpiA transferase-like RAM_17190 d6321aed1bab834a2692244909d8fdc9 243 SMART SM00882 7 203 5.9E-4 T 13-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 RAM_17190 d6321aed1bab834a2692244909d8fdc9 243 Gene3D G3DSA:3.40.1080.10 2 237 5.1E-42 T 13-10-2018 RAM_13115 0aa68fec2b5a41d89bb4b6fecdc221da 578 Gene3D G3DSA:3.40.50.300 11 184 8.6E-21 T 13-10-2018 RAM_13115 0aa68fec2b5a41d89bb4b6fecdc221da 578 Pfam PF04851 Type III restriction enzyme, res subunit 20 172 4.9E-13 T 13-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 RAM_13115 0aa68fec2b5a41d89bb4b6fecdc221da 578 Gene3D G3DSA:3.40.50.300 200 400 2.5E-14 T 13-10-2018 RAM_13115 0aa68fec2b5a41d89bb4b6fecdc221da 578 SUPERFAMILY SSF52540 134 384 9.04E-18 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_13115 0aa68fec2b5a41d89bb4b6fecdc221da 578 SMART SM00487 16 194 4.7E-11 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RAM_13115 0aa68fec2b5a41d89bb4b6fecdc221da 578 SUPERFAMILY SSF52540 17 176 7.28E-23 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_16385 8ba60993f70c33a8ba558212d7fb9e89 398 Gene3D G3DSA:1.20.1250.20 5 190 2.4E-15 T 13-10-2018 RAM_16385 8ba60993f70c33a8ba558212d7fb9e89 398 Pfam PF07690 Major Facilitator Superfamily 15 352 1.0E-18 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_16385 8ba60993f70c33a8ba558212d7fb9e89 398 Gene3D G3DSA:1.20.1250.20 192 390 2.6E-8 T 13-10-2018 RAM_16385 8ba60993f70c33a8ba558212d7fb9e89 398 SUPERFAMILY SSF103473 6 387 3.92E-30 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_01890 5da367aafb350665d5c3c9db3942cb15 154 Gene3D G3DSA:3.90.79.10 2 141 8.0E-38 T 13-10-2018 RAM_01890 5da367aafb350665d5c3c9db3942cb15 154 PRINTS PR00502 NUDIX hydrolase family signature 33 47 1.0E-6 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RAM_01890 5da367aafb350665d5c3c9db3942cb15 154 PRINTS PR00502 NUDIX hydrolase family signature 47 62 1.0E-6 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RAM_01890 5da367aafb350665d5c3c9db3942cb15 154 Pfam PF00293 NUDIX domain 4 116 3.4E-17 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RAM_01890 5da367aafb350665d5c3c9db3942cb15 154 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RAM_01890 5da367aafb350665d5c3c9db3942cb15 154 SUPERFAMILY SSF55811 6 140 9.48E-27 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RAM_30235 db73876a242446768094bda8c3f9c09c 136 Gene3D G3DSA:3.30.565.10 6 134 9.5E-26 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_30235 db73876a242446768094bda8c3f9c09c 136 Pfam PF13581 Histidine kinase-like ATPase domain 16 128 7.8E-18 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_30235 db73876a242446768094bda8c3f9c09c 136 SUPERFAMILY SSF55874 41 130 7.83E-11 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_14510 4d16275b513e11c590607295e2b1e415 557 SMART SM00052 5 228 5.7E-14 T 13-10-2018 IPR001633 EAL domain RAM_14510 4d16275b513e11c590607295e2b1e415 557 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 387 495 4.6E-10 T 13-10-2018 IPR000160 GGDEF domain RAM_14510 4d16275b513e11c590607295e2b1e415 557 Gene3D G3DSA:3.20.20.450 3 239 1.6E-42 T 13-10-2018 IPR035919 EAL domain superfamily RAM_14510 4d16275b513e11c590607295e2b1e415 557 SUPERFAMILY SSF55073 388 526 3.69E-14 T 13-10-2018 IPR029787 Nucleotide cyclase RAM_14510 4d16275b513e11c590607295e2b1e415 557 Pfam PF00563 EAL domain 7 223 6.3E-39 T 13-10-2018 IPR001633 EAL domain RAM_14510 4d16275b513e11c590607295e2b1e415 557 Pfam PF00990 Diguanylate cyclase, GGDEF domain 388 469 3.1E-9 T 13-10-2018 IPR000160 GGDEF domain RAM_14510 4d16275b513e11c590607295e2b1e415 557 SMART SM00267 372 534 4.7E-6 T 13-10-2018 IPR000160 GGDEF domain RAM_14510 4d16275b513e11c590607295e2b1e415 557 Gene3D G3DSA:3.30.70.270 374 524 2.1E-15 T 13-10-2018 RAM_14510 4d16275b513e11c590607295e2b1e415 557 SUPERFAMILY SSF141868 7 234 6.54E-43 T 13-10-2018 IPR035919 EAL domain superfamily RAM_14010 d5d194900fc7b299926f5b8659e529fd 89 Pfam PF01192 RNA polymerase Rpb6 21 83 1.3E-14 T 13-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 RAM_14010 d5d194900fc7b299926f5b8659e529fd 89 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 14 86 14.179 T 13-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAM_14010 d5d194900fc7b299926f5b8659e529fd 89 SMART SM01409 21 85 1.7E-13 T 13-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 RAM_14010 d5d194900fc7b299926f5b8659e529fd 89 Gene3D G3DSA:3.90.940.10 14 89 3.9E-19 T 13-10-2018 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 RAM_14010 d5d194900fc7b299926f5b8659e529fd 89 SUPERFAMILY SSF63562 14 85 9.24E-23 T 13-10-2018 IPR036161 RPB6/omega subunit-like superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 RAM_14010 d5d194900fc7b299926f5b8659e529fd 89 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 14 84 2.4E-26 T 13-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAM_26375 9d8945fb0ac9d250305fe04fc2619c7c 284 TIGRFAM TIGR03619 F420_Rv2161c: probable F420-dependent oxidoreductase, Rv2161c family 18 257 8.2E-75 T 13-10-2018 IPR019921 Luciferase-like, F420-dependent oxidoreductase, Rv2161c, predicted RAM_26375 9d8945fb0ac9d250305fe04fc2619c7c 284 Gene3D G3DSA:3.20.20.30 2 280 4.5E-64 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_26375 9d8945fb0ac9d250305fe04fc2619c7c 284 SUPERFAMILY SSF51679 18 235 7.33E-54 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_26375 9d8945fb0ac9d250305fe04fc2619c7c 284 Pfam PF00296 Luciferase-like monooxygenase 18 232 5.4E-48 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_22295 466b33a2679e636e50a47577711792dd 506 Pfam PF07730 Histidine kinase 301 364 2.8E-11 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_22295 466b33a2679e636e50a47577711792dd 506 Pfam PF13185 GAF domain 137 284 9.8E-21 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_22295 466b33a2679e636e50a47577711792dd 506 SUPERFAMILY SSF55874 389 494 3.16E-8 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_22295 466b33a2679e636e50a47577711792dd 506 Gene3D G3DSA:3.30.450.40 18 122 1.3E-5 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_22295 466b33a2679e636e50a47577711792dd 506 SUPERFAMILY SSF55781 121 297 2.01E-24 T 13-10-2018 RAM_22295 466b33a2679e636e50a47577711792dd 506 SMART SM00065 139 293 1.3E-11 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_22295 466b33a2679e636e50a47577711792dd 506 Gene3D G3DSA:3.30.450.40 141 300 1.0E-29 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_22295 466b33a2679e636e50a47577711792dd 506 SUPERFAMILY SSF55781 10 134 1.54E-7 T 13-10-2018 RAM_22295 466b33a2679e636e50a47577711792dd 506 Gene3D G3DSA:3.30.565.10 369 497 1.9E-20 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_45155 48a67be8185c82f2cc3e00627578b0df 205 SMART SM00943 22 181 0.0028 T 13-10-2018 IPR015330 DNA primase/polymerase, bifunctional, N-terminal RAM_45155 48a67be8185c82f2cc3e00627578b0df 205 Pfam PF09250 Bifunctional DNA primase/polymerase, N-terminal 25 175 2.5E-10 T 13-10-2018 IPR015330 DNA primase/polymerase, bifunctional, N-terminal RAM_46435 ba33d23b9e7e5154a375b71fdaed4f81 379 Pfam PF07690 Major Facilitator Superfamily 23 252 1.1E-12 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_46435 ba33d23b9e7e5154a375b71fdaed4f81 379 Gene3D G3DSA:1.20.1250.20 6 366 3.9E-22 T 13-10-2018 RAM_46435 ba33d23b9e7e5154a375b71fdaed4f81 379 SUPERFAMILY SSF103473 7 362 1.14E-26 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_05700 f7a713a24f0960a623ee0700f08e8637 475 Gene3D G3DSA:1.10.10.1100 414 472 9.7E-10 T 13-10-2018 RAM_05700 f7a713a24f0960a623ee0700f08e8637 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 150 175 2.1E-10 T 13-10-2018 RAM_05700 f7a713a24f0960a623ee0700f08e8637 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 233 247 2.1E-10 T 13-10-2018 RAM_05700 f7a713a24f0960a623ee0700f08e8637 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 272 279 2.1E-10 T 13-10-2018 RAM_05700 f7a713a24f0960a623ee0700f08e8637 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 2.1E-10 T 13-10-2018 RAM_05700 f7a713a24f0960a623ee0700f08e8637 475 Gene3D G3DSA:3.50.50.60 117 239 3.0E-84 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_05700 f7a713a24f0960a623ee0700f08e8637 475 SUPERFAMILY SSF51905 3 194 2.74E-42 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_05700 f7a713a24f0960a623ee0700f08e8637 475 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 295 4.6E-52 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAM_05700 f7a713a24f0960a623ee0700f08e8637 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 257 279 5.2E-17 T 13-10-2018 RAM_05700 f7a713a24f0960a623ee0700f08e8637 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 150 168 5.2E-17 T 13-10-2018 RAM_05700 f7a713a24f0960a623ee0700f08e8637 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 104 122 5.2E-17 T 13-10-2018 RAM_05700 f7a713a24f0960a623ee0700f08e8637 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 232 248 5.2E-17 T 13-10-2018 RAM_05700 f7a713a24f0960a623ee0700f08e8637 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 5.2E-17 T 13-10-2018 RAM_05700 f7a713a24f0960a623ee0700f08e8637 475 SUPERFAMILY SSF51905 149 305 3.11E-25 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_05700 f7a713a24f0960a623ee0700f08e8637 475 Gene3D G3DSA:3.50.50.60 6 296 3.0E-84 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_05700 f7a713a24f0960a623ee0700f08e8637 475 Pfam PF04324 BFD-like [2Fe-2S] binding domain 422 466 3.0E-11 T 13-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain RAM_28265 abe4fc14fbdb2ff8f55b03934517ab91 263 SUPERFAMILY SSF53335 11 254 5.48E-40 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_28265 abe4fc14fbdb2ff8f55b03934517ab91 263 Gene3D G3DSA:3.40.50.150 2 262 6.9E-96 T 13-10-2018 RAM_28265 abe4fc14fbdb2ff8f55b03934517ab91 263 Pfam PF04672 S-adenosyl methyltransferase 9 252 5.3E-85 T 13-10-2018 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type RAM_28265 abe4fc14fbdb2ff8f55b03934517ab91 263 PIRSF PIRSF017393 3 263 2.3E-83 T 13-10-2018 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type RAM_40445 95555a430b7f3f9b756e01c562b4e96f 456 Gene3D G3DSA:3.90.1300.10 1 456 7.1E-143 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RAM_40445 95555a430b7f3f9b756e01c562b4e96f 456 SUPERFAMILY SSF75304 2 450 1.7E-134 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RAM_40445 95555a430b7f3f9b756e01c562b4e96f 456 Pfam PF01425 Amidase 20 441 3.3E-100 T 13-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RAM_40445 95555a430b7f3f9b756e01c562b4e96f 456 ProSitePatterns PS00571 Amidases signature. 149 180 - T 13-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 RAM_10185 5a6deb6f7fc852f173b5f05a18c9ae2c 361 SUPERFAMILY SSF56601 8 345 5.18E-67 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_10185 5a6deb6f7fc852f173b5f05a18c9ae2c 361 Pfam PF00144 Beta-lactamase 27 340 2.1E-55 T 13-10-2018 IPR001466 Beta-lactamase-related RAM_10185 5a6deb6f7fc852f173b5f05a18c9ae2c 361 Gene3D G3DSA:3.40.710.30 5 359 4.1E-105 T 13-10-2018 RAM_11505 75b1342fc9a89839a25bbcd60057ca1e 197 SUPERFAMILY SSF46689 5 77 1.18E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_11505 75b1342fc9a89839a25bbcd60057ca1e 197 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 2.9E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_11505 75b1342fc9a89839a25bbcd60057ca1e 197 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 2.9E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_11505 75b1342fc9a89839a25bbcd60057ca1e 197 ProSitePatterns PS01081 TetR-type HTH domain signature. 25 55 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RAM_11505 75b1342fc9a89839a25bbcd60057ca1e 197 Gene3D G3DSA:1.10.357.10 2 184 1.0E-28 T 13-10-2018 RAM_11505 75b1342fc9a89839a25bbcd60057ca1e 197 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 59 1.5E-15 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_04990 8d541d7e17aba27ae54d4621c29d98c9 231 Pfam PF00072 Response regulator receiver domain 2 112 6.6E-30 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_04990 8d541d7e17aba27ae54d4621c29d98c9 231 SMART SM00862 141 228 7.0E-21 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_04990 8d541d7e17aba27ae54d4621c29d98c9 231 SMART SM00448 1 111 1.9E-38 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_04990 8d541d7e17aba27ae54d4621c29d98c9 231 Gene3D G3DSA:1.10.10.10 119 231 6.9E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_04990 8d541d7e17aba27ae54d4621c29d98c9 231 Pfam PF00486 Transcriptional regulatory protein, C terminal 142 228 2.3E-20 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_04990 8d541d7e17aba27ae54d4621c29d98c9 231 Gene3D G3DSA:3.40.50.2300 1 118 1.5E-37 T 13-10-2018 RAM_04990 8d541d7e17aba27ae54d4621c29d98c9 231 SUPERFAMILY SSF52172 2 119 6.26E-40 T 13-10-2018 IPR011006 CheY-like superfamily RAM_04990 8d541d7e17aba27ae54d4621c29d98c9 231 SUPERFAMILY SSF46894 120 229 1.19E-22 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_31245 607c4bfb834e6b094ba888261f52358a 461 Pfam PF00135 Carboxylesterase family 3 428 4.2E-84 T 13-10-2018 IPR002018 Carboxylesterase, type B RAM_31245 607c4bfb834e6b094ba888261f52358a 461 ProSitePatterns PS00941 Carboxylesterases type-B signature 2. 73 83 - T 13-10-2018 IPR019819 Carboxylesterase type B, conserved site RAM_31245 607c4bfb834e6b094ba888261f52358a 461 SUPERFAMILY SSF53474 3 459 1.15E-97 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_31245 607c4bfb834e6b094ba888261f52358a 461 Gene3D G3DSA:3.40.50.1820 1 460 4.6E-114 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_19320 259e75726637d17403b73edd11b15b66 598 Pfam PF00374 Nickel-dependent hydrogenase 180 575 1.4E-42 T 13-10-2018 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 RAM_19320 259e75726637d17403b73edd11b15b66 598 Pfam PF00374 Nickel-dependent hydrogenase 57 141 3.8E-18 T 13-10-2018 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 RAM_19320 259e75726637d17403b73edd11b15b66 598 Gene3D G3DSA:1.10.645.10 19 575 4.0E-224 T 13-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_19320 259e75726637d17403b73edd11b15b66 598 SUPERFAMILY SSF56762 18 575 2.35E-107 T 13-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_27595 8d6dbb303b50a9d3ca024b1ae5ebc51b 386 Gene3D G3DSA:3.40.50.11450 2 382 9.9E-107 T 13-10-2018 RAM_27595 8d6dbb303b50a9d3ca024b1ae5ebc51b 386 SUPERFAMILY SSF53756 2 383 2.66E-64 T 13-10-2018 RAM_27595 8d6dbb303b50a9d3ca024b1ae5ebc51b 386 Pfam PF06722 Protein of unknown function (DUF1205) 175 273 5.8E-15 T 13-10-2018 IPR010610 Domain of unknown function DUF1205 RAM_27595 8d6dbb303b50a9d3ca024b1ae5ebc51b 386 Gene3D G3DSA:3.40.50.2000 197 369 9.9E-107 T 13-10-2018 RAM_42915 481f02cbc6d4c4e398bd09b8a859864a 430 Gene3D G3DSA:3.30.465.10 89 422 2.3E-86 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 RAM_42915 481f02cbc6d4c4e398bd09b8a859864a 430 Pfam PF01565 FAD binding domain 26 157 7.1E-32 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RAM_42915 481f02cbc6d4c4e398bd09b8a859864a 430 Gene3D G3DSA:3.30.43.10 2 76 2.3E-15 T 13-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 RAM_42915 481f02cbc6d4c4e398bd09b8a859864a 430 SUPERFAMILY SSF56176 5 187 1.21E-48 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RAM_42915 481f02cbc6d4c4e398bd09b8a859864a 430 Gene3D G3DSA:3.40.462.20 187 392 2.3E-86 T 13-10-2018 RAM_42915 481f02cbc6d4c4e398bd09b8a859864a 430 ProSitePatterns PS00862 Oxygen oxidoreductases covalent FAD-binding site. 26 59 - T 13-10-2018 IPR006093 Oxygen oxidoreductase covalent FAD-binding site GO:0016491|GO:0055114 RAM_14620 458951e3314b08677cbf2f309e3cb961 134 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 23 87 8.6E-7 T 13-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RAM_14620 458951e3314b08677cbf2f309e3cb961 134 SUPERFAMILY SSF50475 5 130 3.55E-17 T 13-10-2018 RAM_14620 458951e3314b08677cbf2f309e3cb961 134 Gene3D G3DSA:2.30.110.10 1 132 5.5E-17 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_33570 4a5df554aa3dce93e3c9cacb32cffce9 230 SMART SM01012 140 219 3.9E-4 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 RAM_33570 4a5df554aa3dce93e3c9cacb32cffce9 230 Gene3D G3DSA:3.30.450.40 3 164 8.1E-11 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_33570 4a5df554aa3dce93e3c9cacb32cffce9 230 Pfam PF03861 ANTAR domain 178 219 8.8E-7 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 RAM_33570 4a5df554aa3dce93e3c9cacb32cffce9 230 SUPERFAMILY SSF55781 18 161 7.46E-14 T 13-10-2018 RAM_36005 c92dfc1533f52bd0a62e4171cf18b58f 71 Gene3D G3DSA:3.30.70.20 2 62 1.4E-15 T 13-10-2018 RAM_36005 c92dfc1533f52bd0a62e4171cf18b58f 71 SUPERFAMILY SSF54862 3 61 6.08E-9 T 13-10-2018 RAM_36005 c92dfc1533f52bd0a62e4171cf18b58f 71 PRINTS PR00352 3Fe-4S ferredoxin signature 46 58 3.2E-6 T 13-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 RAM_36005 c92dfc1533f52bd0a62e4171cf18b58f 71 PRINTS PR00352 3Fe-4S ferredoxin signature 7 18 3.2E-6 T 13-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 RAM_36005 c92dfc1533f52bd0a62e4171cf18b58f 71 PRINTS PR00352 3Fe-4S ferredoxin signature 18 28 3.2E-6 T 13-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 RAM_36005 c92dfc1533f52bd0a62e4171cf18b58f 71 Pfam PF13370 4Fe-4S single cluster domain of Ferredoxin I 7 60 5.2E-9 T 13-10-2018 RAM_27265 7e5288a275d68657af5c99ed03b46734 508 Pfam PF01494 FAD binding domain 6 349 1.9E-66 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_27265 7e5288a275d68657af5c99ed03b46734 508 SUPERFAMILY SSF51905 6 384 4.94E-63 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_27265 7e5288a275d68657af5c99ed03b46734 508 Gene3D G3DSA:3.30.70.2450 189 274 1.5E-84 T 13-10-2018 RAM_27265 7e5288a275d68657af5c99ed03b46734 508 Gene3D G3DSA:3.50.50.60 7 348 1.5E-84 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_27265 7e5288a275d68657af5c99ed03b46734 508 Gene3D G3DSA:3.40.30.120 406 502 4.1E-6 T 13-10-2018 RAM_27265 7e5288a275d68657af5c99ed03b46734 508 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 336 352 1.2E-38 T 13-10-2018 RAM_27265 7e5288a275d68657af5c99ed03b46734 508 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 285 300 1.2E-38 T 13-10-2018 RAM_27265 7e5288a275d68657af5c99ed03b46734 508 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 300 316 1.2E-38 T 13-10-2018 RAM_27265 7e5288a275d68657af5c99ed03b46734 508 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 160 175 1.2E-38 T 13-10-2018 RAM_27265 7e5288a275d68657af5c99ed03b46734 508 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 318 336 1.2E-38 T 13-10-2018 RAM_27265 7e5288a275d68657af5c99ed03b46734 508 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 7 29 1.2E-38 T 13-10-2018 RAM_17485 6de67956c92d39334bca731a9f612cb1 86 Pfam PF04226 Transglycosylase associated protein 33 82 1.3E-9 T 13-10-2018 IPR007341 Transglycosylase-associated protein GO:0016021 RAM_09915 3f4b5e5712997aaa8ec35d0cf61e0885 358 SUPERFAMILY SSF51556 47 321 8.81E-56 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_09915 3f4b5e5712997aaa8ec35d0cf61e0885 358 Gene3D G3DSA:3.20.20.140 49 321 6.3E-48 T 13-10-2018 RAM_09915 3f4b5e5712997aaa8ec35d0cf61e0885 358 Pfam PF01979 Amidohydrolase family 43 333 8.8E-12 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RAM_09915 3f4b5e5712997aaa8ec35d0cf61e0885 358 Gene3D G3DSA:2.30.40.10 39 356 6.3E-48 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_23335 5a4ef874c4aa0f62f1087c8983b7c0ce 289 SUPERFAMILY SSF55447 172 281 1.11E-18 T 13-10-2018 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily RAM_23335 5a4ef874c4aa0f62f1087c8983b7c0ce 289 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 172 276 1.6E-10 T 13-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal RAM_23335 5a4ef874c4aa0f62f1087c8983b7c0ce 289 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 2 163 2.6E-47 T 13-10-2018 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 RAM_23335 5a4ef874c4aa0f62f1087c8983b7c0ce 289 Gene3D G3DSA:3.30.465.10 1 167 1.1E-51 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 RAM_23335 5a4ef874c4aa0f62f1087c8983b7c0ce 289 SMART SM01092 171 277 3.9E-15 T 13-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal RAM_23335 5a4ef874c4aa0f62f1087c8983b7c0ce 289 Gene3D G3DSA:3.30.390.50 171 280 5.6E-19 T 13-10-2018 RAM_23335 5a4ef874c4aa0f62f1087c8983b7c0ce 289 SUPERFAMILY SSF56176 2 164 4.91E-51 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RAM_27270 94692bc7adf1a845cecdaba05cc450e4 113 Pfam PF13564 DoxX-like family 7 106 1.2E-15 T 13-10-2018 IPR032808 DoxX family RAM_01770 3469f310573cb7ad88bb27fe96de8094 314 SUPERFAMILY SSF53850 59 299 2.5E-54 T 13-10-2018 RAM_01770 3469f310573cb7ad88bb27fe96de8094 314 Gene3D G3DSA:3.40.190.10 171 259 1.3E-72 T 13-10-2018 RAM_01770 3469f310573cb7ad88bb27fe96de8094 314 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 80 299 1.6E-47 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RAM_01770 3469f310573cb7ad88bb27fe96de8094 314 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 103 116 - T 13-10-2018 IPR018313 Solute-binding protein family 3, conserved site RAM_01770 3469f310573cb7ad88bb27fe96de8094 314 SMART SM00062 79 302 1.1E-57 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RAM_01770 3469f310573cb7ad88bb27fe96de8094 314 Gene3D G3DSA:3.40.190.10 69 304 1.3E-72 T 13-10-2018 RAM_32375 c3f2104c55301c960fbb504b576639e2 283 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.0E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_32375 c3f2104c55301c960fbb504b576639e2 283 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.0E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_32375 c3f2104c55301c960fbb504b576639e2 283 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.0E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_32375 c3f2104c55301c960fbb504b576639e2 283 Gene3D G3DSA:1.10.10.10 1 87 1.8E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_32375 c3f2104c55301c960fbb504b576639e2 283 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 2.7E-22 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_32375 c3f2104c55301c960fbb504b576639e2 283 Gene3D G3DSA:3.40.190.10 161 257 4.2E-22 T 13-10-2018 RAM_32375 c3f2104c55301c960fbb504b576639e2 283 Pfam PF03466 LysR substrate binding domain 88 280 2.0E-24 T 13-10-2018 IPR005119 LysR, substrate-binding RAM_32375 c3f2104c55301c960fbb504b576639e2 283 Gene3D G3DSA:3.40.190.10 91 277 4.2E-22 T 13-10-2018 RAM_32375 c3f2104c55301c960fbb504b576639e2 283 SUPERFAMILY SSF53850 90 281 9.77E-23 T 13-10-2018 RAM_32375 c3f2104c55301c960fbb504b576639e2 283 SUPERFAMILY SSF46785 1 84 8.09E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_04445 5a36ab472ecee7213bc3f250edfc07f6 446 Pfam PF01547 Bacterial extracellular solute-binding protein 46 335 1.3E-45 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein RAM_04445 5a36ab472ecee7213bc3f250edfc07f6 446 SUPERFAMILY SSF53850 18 439 7.91E-68 T 13-10-2018 RAM_04445 5a36ab472ecee7213bc3f250edfc07f6 446 Gene3D G3DSA:3.40.190.10 147 432 4.8E-131 T 13-10-2018 RAM_04445 5a36ab472ecee7213bc3f250edfc07f6 446 Gene3D G3DSA:3.40.190.10 49 403 4.8E-131 T 13-10-2018 RAM_10425 9cacbf3004c2b064986747c0b23c6995 227 SUPERFAMILY SSF55166 71 224 9.42E-21 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 RAM_10425 9cacbf3004c2b064986747c0b23c6995 227 Pfam PF13539 D-alanyl-D-alanine carboxypeptidase 145 222 1.6E-19 T 13-10-2018 IPR039561 Peptidase M15C GO:0008233 RAM_10425 9cacbf3004c2b064986747c0b23c6995 227 Gene3D G3DSA:3.30.1380.10 129 223 1.2E-13 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 RAM_19315 d4fd0a41911b7349af02edd8923db46e 172 SUPERFAMILY SSF117916 70 146 6.54E-22 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily RAM_19315 d4fd0a41911b7349af02edd8923db46e 172 Pfam PF01106 NifU-like domain 80 145 1.3E-23 T 13-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 RAM_19315 d4fd0a41911b7349af02edd8923db46e 172 Gene3D G3DSA:3.30.300.130 72 156 4.9E-28 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily RAM_19315 d4fd0a41911b7349af02edd8923db46e 172 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 84 136 3.0E-11 T 13-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 RAM_00585 6df8466e3ee8c7fa6b8b439ecfcbfc24 327 Gene3D G3DSA:3.40.50.720 1 301 3.6E-135 T 13-10-2018 RAM_00585 6df8466e3ee8c7fa6b8b439ecfcbfc24 327 Pfam PF16363 GDP-mannose 4,6 dehydratase 1 310 9.4E-124 T 13-10-2018 IPR016040 NAD(P)-binding domain RAM_00585 6df8466e3ee8c7fa6b8b439ecfcbfc24 327 Gene3D G3DSA:3.90.25.10 183 315 3.6E-135 T 13-10-2018 RAM_00585 6df8466e3ee8c7fa6b8b439ecfcbfc24 327 Hamap MF_00955 GDP-mannose 4,6-dehydratase [gmd]. 1 320 50.461 T 13-10-2018 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|Reactome: R-HSA-6787639 RAM_00585 6df8466e3ee8c7fa6b8b439ecfcbfc24 327 TIGRFAM TIGR01472 gmd: GDP-mannose 4,6-dehydratase 1 316 2.8E-128 T 13-10-2018 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|Reactome: R-HSA-6787639 RAM_00585 6df8466e3ee8c7fa6b8b439ecfcbfc24 327 SUPERFAMILY SSF51735 1 315 2.67E-71 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_47645 7439b4062e6fcd620e4db00fa89cf8aa 503 Pfam PF09594 Glycosyltransferase family 87 168 388 8.1E-12 T 13-10-2018 IPR018584 Glycosyltransferase family 87 GO:0016758 RAM_47645 7439b4062e6fcd620e4db00fa89cf8aa 503 PIRSF PIRSF010361 9 489 1.7E-153 T 13-10-2018 IPR016570 Uncharacterised conserved protein UCP010361, membrane RAM_38455 102a16f07c140a2e55649befe9093d19 661 SMART SM00458 528 659 1.1E-6 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_38455 102a16f07c140a2e55649befe9093d19 661 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 558 646 1.8E-17 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_38455 102a16f07c140a2e55649befe9093d19 661 Gene3D G3DSA:3.20.20.80 41 422 6.0E-66 T 13-10-2018 RAM_38455 102a16f07c140a2e55649befe9093d19 661 Gene3D G3DSA:2.80.10.50 531 659 1.2E-20 T 13-10-2018 RAM_38455 102a16f07c140a2e55649befe9093d19 661 Gene3D G3DSA:2.60.40.1180 423 513 1.9E-8 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta RAM_38455 102a16f07c140a2e55649befe9093d19 661 SUPERFAMILY SSF51445 43 423 5.31E-29 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_38455 102a16f07c140a2e55649befe9093d19 661 Pfam PF14587 O-Glycosyl hydrolase family 30 35 260 1.4E-15 T 13-10-2018 IPR039514 Endo-beta-1,6-galactanase-like GO:0004553 RAM_38455 102a16f07c140a2e55649befe9093d19 661 SUPERFAMILY SSF50370 527 657 7.76E-23 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_47945 dc4671537aa8ba96cfbe5e4386b8c9ab 531 Gene3D G3DSA:3.30.200.20 23 127 1.8E-23 T 13-10-2018 RAM_47945 dc4671537aa8ba96cfbe5e4386b8c9ab 531 Gene3D G3DSA:1.10.510.10 128 279 9.4E-39 T 13-10-2018 RAM_47945 dc4671537aa8ba96cfbe5e4386b8c9ab 531 SUPERFAMILY SSF56112 32 251 1.53E-8 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_04315 39e60c78807a3b409d66556846e1fd2c 414 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 94 314 2.3E-35 T 13-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 RAM_04315 39e60c78807a3b409d66556846e1fd2c 414 SUPERFAMILY SSF56601 10 332 1.91E-53 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_04315 39e60c78807a3b409d66556846e1fd2c 414 Gene3D G3DSA:3.40.710.10 61 346 8.9E-84 T 13-10-2018 RAM_04315 39e60c78807a3b409d66556846e1fd2c 414 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 170 187 2.4E-7 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RAM_04315 39e60c78807a3b409d66556846e1fd2c 414 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 196 209 2.4E-7 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RAM_04315 39e60c78807a3b409d66556846e1fd2c 414 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 122 133 2.4E-7 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RAM_24070 cf73657992f0ff041191df7dcddfe817 185 TIGRFAM TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family 10 176 4.7E-43 T 13-10-2018 IPR004385 Nucleoside diphosphate pyrophosphatase GO:0016818|GO:0046872 Reactome: R-HSA-480985 RAM_24070 cf73657992f0ff041191df7dcddfe817 185 SUPERFAMILY SSF55811 3 180 2.03E-47 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RAM_24070 cf73657992f0ff041191df7dcddfe817 185 Pfam PF00293 NUDIX domain 36 146 1.8E-11 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RAM_24070 cf73657992f0ff041191df7dcddfe817 185 Gene3D G3DSA:3.90.79.10 1 179 3.0E-52 T 13-10-2018 RAM_46375 15bb7cf4f6373c008d1afe7ed64edfee 266 SUPERFAMILY SSF51445 63 261 2.44E-63 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_46375 15bb7cf4f6373c008d1afe7ed64edfee 266 ProSitePatterns PS00953 Glycosyl hydrolases family 25 active sites signature. 66 99 - T 13-10-2018 IPR008270 Glycoside hydrolase, family 25, active site GO:0003796|GO:0009253|GO:0016998 RAM_46375 15bb7cf4f6373c008d1afe7ed64edfee 266 SMART SM00641 62 171 4.4E-40 T 13-10-2018 IPR018077 Glycoside hydrolase, family 25 subgroup RAM_46375 15bb7cf4f6373c008d1afe7ed64edfee 266 Pfam PF01183 Glycosyl hydrolases family 25 66 248 6.1E-47 T 13-10-2018 IPR002053 Glycoside hydrolase, family 25 GO:0003796|GO:0009253|GO:0016998 RAM_46375 15bb7cf4f6373c008d1afe7ed64edfee 266 Gene3D G3DSA:3.20.20.80 61 266 2.9E-79 T 13-10-2018 RAM_42930 65154b680557580ed55efbe541e629f8 154 Gene3D G3DSA:1.10.10.10 3 146 7.8E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_42930 65154b680557580ed55efbe541e629f8 154 Pfam PF12802 MarR family 41 98 9.5E-9 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_42930 65154b680557580ed55efbe541e629f8 154 SMART SM00347 34 134 5.2E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_42930 65154b680557580ed55efbe541e629f8 154 SUPERFAMILY SSF46785 22 146 3.02E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_02190 9bd6e8e8ee184af940427944b5a822c3 139 Pfam PF01381 Helix-turn-helix 15 67 2.1E-14 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_02190 9bd6e8e8ee184af940427944b5a822c3 139 SMART SM00530 14 69 1.7E-14 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_02190 9bd6e8e8ee184af940427944b5a822c3 139 SUPERFAMILY SSF47413 8 71 8.45E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_02190 9bd6e8e8ee184af940427944b5a822c3 139 Gene3D G3DSA:1.10.260.40 6 74 1.7E-17 T 13-10-2018 RAM_32435 b5664e9d5ec06a6e3f44a1528413622a 125 SUPERFAMILY SSF54593 8 123 8.8E-18 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_32435 b5664e9d5ec06a6e3f44a1528413622a 125 Gene3D G3DSA:3.10.180.10 1 121 6.3E-25 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_24805 eee34434a6b2998bc9ddd43c6a51dfcd 380 Gene3D G3DSA:3.40.350.10 5 148 1.1E-34 T 13-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal RAM_24805 eee34434a6b2998bc9ddd43c6a51dfcd 380 Gene3D G3DSA:3.90.230.10 149 380 4.0E-78 T 13-10-2018 RAM_24805 eee34434a6b2998bc9ddd43c6a51dfcd 380 Pfam PF00557 Metallopeptidase family M24 159 362 1.8E-59 T 13-10-2018 IPR000994 Peptidase M24 RAM_24805 eee34434a6b2998bc9ddd43c6a51dfcd 380 Pfam PF01321 Creatinase/Prolidase N-terminal domain 19 151 6.9E-16 T 13-10-2018 IPR000587 Creatinase, N-terminal GO:0016787 RAM_24805 eee34434a6b2998bc9ddd43c6a51dfcd 380 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 308 320 - T 13-10-2018 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site RAM_24805 eee34434a6b2998bc9ddd43c6a51dfcd 380 SUPERFAMILY SSF53092 12 149 1.74E-24 T 13-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal RAM_24805 eee34434a6b2998bc9ddd43c6a51dfcd 380 SUPERFAMILY SSF55920 150 378 6.54E-71 T 13-10-2018 IPR036005 Creatinase/aminopeptidase-like RAM_18145 ec931dc290886f716944928b6c24193a 94 Gene3D G3DSA:2.60.40.10 2 90 4.1E-12 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_18145 ec931dc290886f716944928b6c24193a 94 SUPERFAMILY SSF81296 16 90 6.16E-11 T 13-10-2018 IPR014756 Immunoglobulin E-set RAM_34475 922be2b3896a663d26208cf6e14a9d4d 258 Pfam PF00561 alpha/beta hydrolase fold 20 237 3.4E-21 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_34475 922be2b3896a663d26208cf6e14a9d4d 258 SUPERFAMILY SSF53474 1 254 8.66E-55 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_34475 922be2b3896a663d26208cf6e14a9d4d 258 PRINTS PR00111 Alpha/beta hydrolase fold signature 88 101 1.6E-8 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_34475 922be2b3896a663d26208cf6e14a9d4d 258 PRINTS PR00111 Alpha/beta hydrolase fold signature 44 59 1.6E-8 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_34475 922be2b3896a663d26208cf6e14a9d4d 258 PRINTS PR00111 Alpha/beta hydrolase fold signature 201 215 1.6E-8 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_34475 922be2b3896a663d26208cf6e14a9d4d 258 PRINTS PR00111 Alpha/beta hydrolase fold signature 102 115 1.6E-8 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_34475 922be2b3896a663d26208cf6e14a9d4d 258 Gene3D G3DSA:3.40.50.1820 7 256 3.8E-53 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_16370 308e20ce33dbac6c5712f361f15b23ae 640 Pfam PF02910 Fumarate reductase flavoprotein C-term 508 639 1.4E-36 T 13-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_16370 308e20ce33dbac6c5712f361f15b23ae 640 TIGRFAM TIGR01811 sdhA_Bsu: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 44 639 9.0E-303 T 13-10-2018 IPR011280 Succinate dehydrogenase/fumarate reductase flavoprotein subunit, low-GC Gram-positive bacteria KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 RAM_16370 308e20ce33dbac6c5712f361f15b23ae 640 Gene3D G3DSA:1.20.58.100 479 598 7.2E-24 T 13-10-2018 RAM_16370 308e20ce33dbac6c5712f361f15b23ae 640 SUPERFAMILY SSF51905 39 460 1.37E-46 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_16370 308e20ce33dbac6c5712f361f15b23ae 640 SUPERFAMILY SSF56425 269 411 1.64E-32 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_16370 308e20ce33dbac6c5712f361f15b23ae 640 Gene3D G3DSA:3.90.700.10 300 424 1.2E-99 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_16370 308e20ce33dbac6c5712f361f15b23ae 640 Gene3D G3DSA:3.50.50.60 44 458 1.2E-99 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_16370 308e20ce33dbac6c5712f361f15b23ae 640 Pfam PF00890 FAD binding domain 44 449 2.7E-56 T 13-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_16370 308e20ce33dbac6c5712f361f15b23ae 640 SUPERFAMILY SSF46977 500 639 3.14E-42 T 13-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_23865 40af76ba56a7c37a27f58cbf63462b44 114 Gene3D G3DSA:3.30.70.1060 1 114 3.4E-33 T 13-10-2018 RAM_23865 40af76ba56a7c37a27f58cbf63462b44 114 SUPERFAMILY SSF54909 4 113 1.34E-25 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_23865 40af76ba56a7c37a27f58cbf63462b44 114 Pfam PF03795 YCII-related domain 19 97 1.3E-11 T 13-10-2018 IPR005545 YCII-related RAM_37825 7117e4d177681baf7d677b401e974b2f 130 SUPERFAMILY SSF160113 5 58 3.92E-6 T 13-10-2018 IPR036913 YegP-like superfamily RAM_37825 7117e4d177681baf7d677b401e974b2f 130 Gene3D G3DSA:2.30.29.80 1 113 4.6E-5 T 13-10-2018 RAM_37825 7117e4d177681baf7d677b401e974b2f 130 SUPERFAMILY SSF160113 62 107 3.14E-6 T 13-10-2018 IPR036913 YegP-like superfamily RAM_37825 7117e4d177681baf7d677b401e974b2f 130 Pfam PF07411 Domain of unknown function (DUF1508) 63 107 1.1E-5 T 13-10-2018 IPR010879 Domain of unknown function DUF1508 RAM_32415 87ebb7aa8e6d85878982321e3b2cb139 157 SUPERFAMILY SSF47413 21 62 3.56E-6 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_17755 b33f4c9a057b5786196cd66900821d23 388 SUPERFAMILY SSF103473 10 356 3.92E-14 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_17755 b33f4c9a057b5786196cd66900821d23 388 Gene3D G3DSA:1.20.1250.20 2 351 9.6E-10 T 13-10-2018 RAM_32410 8c5bb12d297e13c48cabc668f631bfc9 167 Hamap MF_01940 RNA 2',3'-cyclic phosphodiesterase [thpR]. 2 164 15.79 T 13-10-2018 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 RAM_32410 8c5bb12d297e13c48cabc668f631bfc9 167 Pfam PF02834 LigT like Phosphoesterase 86 156 1.0E-7 T 13-10-2018 IPR014051 Phosphoesterase, HXTX RAM_32410 8c5bb12d297e13c48cabc668f631bfc9 167 Pfam PF02834 LigT like Phosphoesterase 16 79 2.9E-8 T 13-10-2018 IPR014051 Phosphoesterase, HXTX RAM_32410 8c5bb12d297e13c48cabc668f631bfc9 167 TIGRFAM TIGR02258 2_5_ligase: 2'-5' RNA ligase 4 163 3.0E-20 T 13-10-2018 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 RAM_32410 8c5bb12d297e13c48cabc668f631bfc9 167 Gene3D G3DSA:3.90.1140.10 4 167 4.1E-28 T 13-10-2018 RAM_32410 8c5bb12d297e13c48cabc668f631bfc9 167 SUPERFAMILY SSF55144 4 164 1.19E-26 T 13-10-2018 IPR009097 Cyclic phosphodiesterase RAM_20065 3d46a4fef00c865a9046aad7266fc9bd 563 Gene3D G3DSA:3.90.226.10 283 543 2.0E-30 T 13-10-2018 RAM_20065 3d46a4fef00c865a9046aad7266fc9bd 563 SUPERFAMILY SSF50486 172 249 2.55E-13 T 13-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 RAM_20065 3d46a4fef00c865a9046aad7266fc9bd 563 Gene3D G3DSA:3.10.25.10 172 252 1.8E-8 T 13-10-2018 IPR037022 Formyl transferase, C-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RAM_20065 3d46a4fef00c865a9046aad7266fc9bd 563 SUPERFAMILY SSF53328 2 160 3.66E-23 T 13-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RAM_20065 3d46a4fef00c865a9046aad7266fc9bd 563 SUPERFAMILY SSF52096 286 539 6.01E-30 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_20065 3d46a4fef00c865a9046aad7266fc9bd 563 PIRSF PIRSF006787 1 555 4.3E-191 T 13-10-2018 IPR009188 [NiFe]-hydrogenase maturation factor, HypX/HoxX type RAM_20065 3d46a4fef00c865a9046aad7266fc9bd 563 Pfam PF00378 Enoyl-CoA hydratase/isomerase 313 485 1.2E-17 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RAM_20065 3d46a4fef00c865a9046aad7266fc9bd 563 Pfam PF02911 Formyl transferase, C-terminal domain 172 249 4.5E-11 T 13-10-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RAM_20065 3d46a4fef00c865a9046aad7266fc9bd 563 Gene3D G3DSA:3.40.50.170 16 164 3.4E-14 T 13-10-2018 RAM_42920 1234eede40fea58118d8faae699b0cfa 389 Pfam PF01757 Acyltransferase family 16 343 1.6E-23 T 13-10-2018 IPR002656 Acyltransferase 3 GO:0016747 RAM_24715 247ab687f6f7bff2e558cd142b4c3227 245 Pfam PF00107 Zinc-binding dehydrogenase 80 204 5.5E-16 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RAM_24715 247ab687f6f7bff2e558cd142b4c3227 245 Gene3D G3DSA:3.90.180.10 3 236 3.7E-40 T 13-10-2018 RAM_24715 247ab687f6f7bff2e558cd142b4c3227 245 SUPERFAMILY SSF51735 41 207 2.18E-30 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_24715 247ab687f6f7bff2e558cd142b4c3227 245 Gene3D G3DSA:3.40.50.720 48 220 3.7E-40 T 13-10-2018 RAM_30705 79d202632c7911be24cbc48a8d75dc4b 293 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 247 255 - T 13-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RAM_30705 79d202632c7911be24cbc48a8d75dc4b 293 SUPERFAMILY SSF52343 96 203 1.05E-19 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RAM_30705 79d202632c7911be24cbc48a8d75dc4b 293 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 222 283 1.1E-11 T 13-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RAM_30705 79d202632c7911be24cbc48a8d75dc4b 293 PRINTS PR00409 Phthalate dioxygenase reductase family signature 109 128 6.6E-22 T 13-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RAM_30705 79d202632c7911be24cbc48a8d75dc4b 293 PRINTS PR00409 Phthalate dioxygenase reductase family signature 50 64 6.6E-22 T 13-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RAM_30705 79d202632c7911be24cbc48a8d75dc4b 293 PRINTS PR00409 Phthalate dioxygenase reductase family signature 74 88 6.6E-22 T 13-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RAM_30705 79d202632c7911be24cbc48a8d75dc4b 293 PRINTS PR00409 Phthalate dioxygenase reductase family signature 28 38 6.6E-22 T 13-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RAM_30705 79d202632c7911be24cbc48a8d75dc4b 293 PRINTS PR00409 Phthalate dioxygenase reductase family signature 38 50 6.6E-22 T 13-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RAM_30705 79d202632c7911be24cbc48a8d75dc4b 293 Gene3D G3DSA:3.10.20.30 203 293 9.3E-23 T 13-10-2018 IPR012675 Beta-grasp domain superfamily RAM_30705 79d202632c7911be24cbc48a8d75dc4b 293 SUPERFAMILY SSF54292 195 291 1.97E-25 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RAM_30705 79d202632c7911be24cbc48a8d75dc4b 293 Gene3D G3DSA:3.40.50.80 104 201 3.5E-15 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RAM_30705 79d202632c7911be24cbc48a8d75dc4b 293 Gene3D G3DSA:2.40.30.10 2 99 2.6E-25 T 13-10-2018 RAM_30705 79d202632c7911be24cbc48a8d75dc4b 293 SUPERFAMILY SSF63380 6 98 4.54E-23 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RAM_12235 d9a36c8da6768af87fae051fc9495985 143 Gene3D G3DSA:3.10.580.10 1 142 9.6E-45 T 13-10-2018 RAM_12235 d9a36c8da6768af87fae051fc9495985 143 SMART SM00116 79 126 8.2E-8 T 13-10-2018 IPR000644 CBS domain RAM_12235 d9a36c8da6768af87fae051fc9495985 143 SMART SM00116 13 61 2.6E-5 T 13-10-2018 IPR000644 CBS domain RAM_12235 d9a36c8da6768af87fae051fc9495985 143 SUPERFAMILY SSF54631 1 140 1.04E-30 T 13-10-2018 RAM_12235 d9a36c8da6768af87fae051fc9495985 143 Pfam PF00571 CBS domain 14 61 2.6E-8 T 13-10-2018 IPR000644 CBS domain RAM_12235 d9a36c8da6768af87fae051fc9495985 143 Pfam PF00571 CBS domain 72 123 3.5E-10 T 13-10-2018 IPR000644 CBS domain RAM_12440 1accd09767af6545e40572664e938f0f 135 SUPERFAMILY SSF55961 8 113 6.47E-8 T 13-10-2018 RAM_18430 1cc9e6ca952357ad847926cf72b1c84c 122 SUPERFAMILY SSF56214 2 119 5.23E-20 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 RAM_18430 1cc9e6ca952357ad847926cf72b1c84c 122 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 3 101 8.0E-11 T 13-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 RAM_18430 1cc9e6ca952357ad847926cf72b1c84c 122 Gene3D G3DSA:3.90.470.20 1 121 3.0E-20 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 RAM_18430 1cc9e6ca952357ad847926cf72b1c84c 122 TIGRFAM TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain 2 119 1.9E-17 T 13-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 RAM_18430 1cc9e6ca952357ad847926cf72b1c84c 122 ProDom PD004282 TRANSFERASE SYNTHASE HOLO-ACYL-CARRIER-PROTEIN HOLO-ACP 4'-PHOSPHOPANTETHEINYL FATTY ACID METAL-BINDING MAGNESIUM LIPID 12 65 5.0E-6 T 13-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 RAM_11620 3e75f24cc6588845b138d4c5101acb46 257 Gene3D G3DSA:3.20.20.70 1 257 3.6E-105 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_11620 3e75f24cc6588845b138d4c5101acb46 257 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 2 257 48.027 T 13-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 RAM_11620 3e75f24cc6588845b138d4c5101acb46 257 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 3 257 8.3E-113 T 13-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 RAM_11620 3e75f24cc6588845b138d4c5101acb46 257 Pfam PF00977 Histidine biosynthesis protein 6 240 8.2E-86 T 13-10-2018 IPR006062 Histidine biosynthesis GO:0000105 RAM_11620 3e75f24cc6588845b138d4c5101acb46 257 SUPERFAMILY SSF51366 4 257 3.61E-79 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 RAM_16815 66dd85b26a596a83e10e2b86ba99ce05 597 SUPERFAMILY SSF52518 3 185 5.68E-51 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_16815 66dd85b26a596a83e10e2b86ba99ce05 597 Gene3D G3DSA:3.40.50.1220 189 343 1.0E-42 T 13-10-2018 RAM_16815 66dd85b26a596a83e10e2b86ba99ce05 597 Gene3D G3DSA:3.40.50.970 1 178 8.6E-57 T 13-10-2018 RAM_16815 66dd85b26a596a83e10e2b86ba99ce05 597 SUPERFAMILY SSF52518 365 565 2.86E-52 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_16815 66dd85b26a596a83e10e2b86ba99ce05 597 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 389 544 3.7E-28 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RAM_16815 66dd85b26a596a83e10e2b86ba99ce05 597 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 199 329 4.3E-26 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 RAM_16815 66dd85b26a596a83e10e2b86ba99ce05 597 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 426 445 - T 13-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 RAM_16815 66dd85b26a596a83e10e2b86ba99ce05 597 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4 171 1.3E-49 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RAM_16815 66dd85b26a596a83e10e2b86ba99ce05 597 Gene3D G3DSA:3.40.50.970 356 584 6.2E-56 T 13-10-2018 RAM_16815 66dd85b26a596a83e10e2b86ba99ce05 597 SUPERFAMILY SSF52467 156 357 3.08E-43 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily RAM_34025 2beaa0dc91624b43f5c99a401fe120a8 105 Pfam PF10824 Excreted virulence factor EspC, type VII ESX diderm 3 91 2.5E-7 T 13-10-2018 IPR022536 ESX-1 secretion-associated protein EspC GO:0009306 RAM_21625 6b47589e9d1c89f9bcabc48d04a2479f 631 Gene3D G3DSA:3.30.230.80 233 401 6.1E-64 T 13-10-2018 RAM_21625 6b47589e9d1c89f9bcabc48d04a2479f 631 PRINTS PR00775 90kDa heat shock protein signature 27 49 6.6E-58 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal RAM_21625 6b47589e9d1c89f9bcabc48d04a2479f 631 PRINTS PR00775 90kDa heat shock protein signature 173 190 6.6E-58 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal RAM_21625 6b47589e9d1c89f9bcabc48d04a2479f 631 PRINTS PR00775 90kDa heat shock protein signature 6 26 6.6E-58 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal RAM_21625 6b47589e9d1c89f9bcabc48d04a2479f 631 PRINTS PR00775 90kDa heat shock protein signature 76 93 6.6E-58 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal RAM_21625 6b47589e9d1c89f9bcabc48d04a2479f 631 PRINTS PR00775 90kDa heat shock protein signature 123 145 6.6E-58 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal RAM_21625 6b47589e9d1c89f9bcabc48d04a2479f 631 PRINTS PR00775 90kDa heat shock protein signature 196 214 6.6E-58 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal RAM_21625 6b47589e9d1c89f9bcabc48d04a2479f 631 PRINTS PR00775 90kDa heat shock protein signature 94 111 6.6E-58 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal RAM_21625 6b47589e9d1c89f9bcabc48d04a2479f 631 Pfam PF00183 Hsp90 protein 223 629 4.7E-132 T 13-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 RAM_21625 6b47589e9d1c89f9bcabc48d04a2479f 631 Gene3D G3DSA:1.20.120.790 491 627 1.3E-37 T 13-10-2018 IPR037196 HSP90, C-terminal domain RAM_21625 6b47589e9d1c89f9bcabc48d04a2479f 631 Gene3D G3DSA:3.40.50.11260 402 490 1.4E-33 T 13-10-2018 RAM_21625 6b47589e9d1c89f9bcabc48d04a2479f 631 SMART SM00387 28 185 1.0E-6 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_21625 6b47589e9d1c89f9bcabc48d04a2479f 631 SUPERFAMILY SSF55874 5 219 3.27E-61 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_21625 6b47589e9d1c89f9bcabc48d04a2479f 631 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 32 157 8.8E-12 T 13-10-2018 RAM_21625 6b47589e9d1c89f9bcabc48d04a2479f 631 Hamap MF_00505 Chaperone protein HtpG [htpG]. 3 628 30.081 T 13-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 RAM_21625 6b47589e9d1c89f9bcabc48d04a2479f 631 PIRSF PIRSF002583 2 631 2.4E-214 T 13-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 RAM_21625 6b47589e9d1c89f9bcabc48d04a2479f 631 SUPERFAMILY SSF110942 512 627 3.92E-31 T 13-10-2018 IPR037196 HSP90, C-terminal domain RAM_21625 6b47589e9d1c89f9bcabc48d04a2479f 631 Gene3D G3DSA:3.30.565.10 1 232 1.3E-73 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_21625 6b47589e9d1c89f9bcabc48d04a2479f 631 SUPERFAMILY SSF54211 231 484 1.37E-94 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RAM_23950 53affa82bd47a094a5d2cfd004b73deb 258 Pfam PF02909 Tetracyclin repressor, C-terminal all-alpha domain 98 252 7.2E-15 T 13-10-2018 IPR004111 Tetracycline transcriptional regulator, TetR, C-terminal GO:0045892 RAM_23950 53affa82bd47a094a5d2cfd004b73deb 258 Gene3D G3DSA:1.10.10.60 31 93 1.3E-24 T 13-10-2018 RAM_23950 53affa82bd47a094a5d2cfd004b73deb 258 Pfam PF00440 Bacterial regulatory proteins, tetR family 42 85 7.9E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_23950 53affa82bd47a094a5d2cfd004b73deb 258 Gene3D G3DSA:1.10.357.10 94 254 2.2E-35 T 13-10-2018 RAM_23950 53affa82bd47a094a5d2cfd004b73deb 258 SUPERFAMILY SSF46689 29 97 4.59E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_23950 53affa82bd47a094a5d2cfd004b73deb 258 SUPERFAMILY SSF48498 103 253 2.22E-22 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_02860 cf509f9fde0d9a370baeb437b691af75 204 SUPERFAMILY SSF109854 4 125 6.71E-16 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_02860 cf509f9fde0d9a370baeb437b691af75 204 Pfam PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain 7 94 1.6E-15 T 13-10-2018 IPR024344 Mycothiol-dependent maleylpyruvate isomerase, metal-binding domain GO:0046872 RAM_02860 cf509f9fde0d9a370baeb437b691af75 204 Gene3D G3DSA:1.20.120.450 3 123 2.0E-11 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_02860 cf509f9fde0d9a370baeb437b691af75 204 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 6 186 6.1E-25 T 13-10-2018 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type RAM_30880 8010c4bea6483c69bfc2e2c651c83daa 403 Pfam PF12555 Thiamine pyrophosphokinase C terminal 344 395 7.8E-17 T 13-10-2018 IPR022215 Thiamine pyrophosphokinase C-terminal RAM_30880 8010c4bea6483c69bfc2e2c651c83daa 403 SUPERFAMILY SSF63999 188 310 6.41E-17 T 13-10-2018 IPR036759 Thiamin pyrophosphokinase, catalytic domain superfamily GO:0004788|GO:0005524|GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 RAM_30880 8010c4bea6483c69bfc2e2c651c83daa 403 Gene3D G3DSA:3.40.50.10240 189 246 3.0E-6 T 13-10-2018 IPR036759 Thiamin pyrophosphokinase, catalytic domain superfamily GO:0004788|GO:0005524|GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 RAM_00360 0988e0c8e2849c3d1d1c297a42475439 414 Pfam PF00171 Aldehyde dehydrogenase family 3 408 1.2E-121 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RAM_00360 0988e0c8e2849c3d1d1c297a42475439 414 SUPERFAMILY SSF53720 3 412 5.24E-120 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RAM_00360 0988e0c8e2849c3d1d1c297a42475439 414 Gene3D G3DSA:3.40.605.10 3 399 2.3E-131 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RAM_00360 0988e0c8e2849c3d1d1c297a42475439 414 Gene3D G3DSA:3.40.309.10 196 380 2.3E-131 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RAM_24400 7b0c538b32f9ae7785851c1e44801fb6 67 SMART SM00923 2 49 1.9E-19 T 13-10-2018 IPR005153 MbtH-like domain RAM_24400 7b0c538b32f9ae7785851c1e44801fb6 67 Gene3D G3DSA:3.90.820.10 2 67 2.1E-31 T 13-10-2018 RAM_24400 7b0c538b32f9ae7785851c1e44801fb6 67 SUPERFAMILY SSF160582 4 64 9.68E-28 T 13-10-2018 IPR038020 MbtH-like domain superfamily RAM_24400 7b0c538b32f9ae7785851c1e44801fb6 67 Pfam PF03621 MbtH-like protein 4 48 2.1E-21 T 13-10-2018 IPR005153 MbtH-like domain RAM_23870 1c86551532572f5180be2a1f2e2803b5 400 Pfam PF04542 Sigma-70 region 2 8 72 7.9E-11 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_23870 1c86551532572f5180be2a1f2e2803b5 400 SUPERFAMILY SSF88659 97 157 5.98E-8 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_23870 1c86551532572f5180be2a1f2e2803b5 400 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 5 157 3.3E-13 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_23870 1c86551532572f5180be2a1f2e2803b5 400 Gene3D G3DSA:1.10.1740.10 2 69 1.7E-9 T 13-10-2018 RAM_23870 1c86551532572f5180be2a1f2e2803b5 400 SUPERFAMILY SSF88946 3 75 5.49E-13 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_07605 b688c40e9f52ed195a0b374ef26f87c0 401 PRINTS PR00735 Glycosyl hydrolase family 8 signature 144 162 2.5E-21 T 13-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 RAM_07605 b688c40e9f52ed195a0b374ef26f87c0 401 PRINTS PR00735 Glycosyl hydrolase family 8 signature 282 291 2.5E-21 T 13-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 RAM_07605 b688c40e9f52ed195a0b374ef26f87c0 401 PRINTS PR00735 Glycosyl hydrolase family 8 signature 252 263 2.5E-21 T 13-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 RAM_07605 b688c40e9f52ed195a0b374ef26f87c0 401 PRINTS PR00735 Glycosyl hydrolase family 8 signature 209 226 2.5E-21 T 13-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 RAM_07605 b688c40e9f52ed195a0b374ef26f87c0 401 PRINTS PR00735 Glycosyl hydrolase family 8 signature 381 395 2.5E-21 T 13-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 RAM_07605 b688c40e9f52ed195a0b374ef26f87c0 401 PRINTS PR00735 Glycosyl hydrolase family 8 signature 82 95 2.5E-21 T 13-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 RAM_07605 b688c40e9f52ed195a0b374ef26f87c0 401 Gene3D G3DSA:1.50.10.10 41 395 1.0E-115 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 RAM_07605 b688c40e9f52ed195a0b374ef26f87c0 401 SUPERFAMILY SSF48208 31 398 1.9E-79 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_07605 b688c40e9f52ed195a0b374ef26f87c0 401 Pfam PF01270 Glycosyl hydrolases family 8 46 392 2.6E-26 T 13-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 RAM_40900 9b6c7d1402fbfac8c30fed8db5a156a3 219 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 35 202 1.5E-16 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_40900 9b6c7d1402fbfac8c30fed8db5a156a3 219 Gene3D G3DSA:1.10.3720.10 15 208 2.3E-25 T 13-10-2018 IPR035906 MetI-like superfamily RAM_40900 9b6c7d1402fbfac8c30fed8db5a156a3 219 SUPERFAMILY SSF161098 15 201 9.55E-29 T 13-10-2018 IPR035906 MetI-like superfamily RAM_19015 b232cb4317bba3f45eded6eaa181d0bc 282 SUPERFAMILY SSF51445 66 278 2.39E-54 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_19015 b232cb4317bba3f45eded6eaa181d0bc 282 SMART SM00641 66 172 1.0E-31 T 13-10-2018 IPR018077 Glycoside hydrolase, family 25 subgroup RAM_19015 b232cb4317bba3f45eded6eaa181d0bc 282 Gene3D G3DSA:3.20.20.80 65 279 8.9E-77 T 13-10-2018 RAM_19015 b232cb4317bba3f45eded6eaa181d0bc 282 Pfam PF01183 Glycosyl hydrolases family 25 70 261 5.2E-43 T 13-10-2018 IPR002053 Glycoside hydrolase, family 25 GO:0003796|GO:0009253|GO:0016998 RAM_24520 377300c23674709a1d934795abba75f9 483 Gene3D G3DSA:2.115.10.20 174 483 4.8E-141 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily RAM_24520 377300c23674709a1d934795abba75f9 483 SMART SM00458 39 165 1.6E-32 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_24520 377300c23674709a1d934795abba75f9 483 SUPERFAMILY SSF75005 202 472 1.37E-30 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily RAM_24520 377300c23674709a1d934795abba75f9 483 SUPERFAMILY SSF50370 38 163 6.68E-42 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_24520 377300c23674709a1d934795abba75f9 483 Pfam PF00652 Ricin-type beta-trefoil lectin domain 39 162 5.9E-32 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_24520 377300c23674709a1d934795abba75f9 483 Pfam PF03664 Glycosyl hydrolase family 62 183 453 8.3E-157 T 13-10-2018 IPR005193 Glycoside hydrolase, family 62, arabinosidase GO:0046373|GO:0046556 KEGG: 00520+3.2.1.55 RAM_24520 377300c23674709a1d934795abba75f9 483 Gene3D G3DSA:2.80.10.50 41 163 1.8E-43 T 13-10-2018 RAM_10830 b6844288cbb0ece205640cfcfe74af60 269 Pfam PF00089 Trypsin 27 261 3.4E-30 T 13-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 RAM_10830 b6844288cbb0ece205640cfcfe74af60 269 SMART SM00020 26 261 8.4E-23 T 13-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 RAM_10830 b6844288cbb0ece205640cfcfe74af60 269 SUPERFAMILY SSF50494 21 267 9.79E-42 T 13-10-2018 IPR009003 Peptidase S1, PA clan RAM_10830 b6844288cbb0ece205640cfcfe74af60 269 Gene3D G3DSA:2.40.10.10 19 266 3.4E-35 T 13-10-2018 RAM_05075 9ee7089019a7811c312959c912159331 385 SUPERFAMILY SSF56645 7 245 4.32E-74 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_05075 9ee7089019a7811c312959c912159331 385 Gene3D G3DSA:2.40.110.10 123 237 9.2E-42 T 13-10-2018 RAM_05075 9ee7089019a7811c312959c912159331 385 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 233 383 2.9E-48 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_05075 9ee7089019a7811c312959c912159331 385 PIRSF PIRSF016578 128 384 1.5E-17 T 13-10-2018 RAM_05075 9ee7089019a7811c312959c912159331 385 PIRSF PIRSF016578 5 94 1.0E-4 T 13-10-2018 RAM_05075 9ee7089019a7811c312959c912159331 385 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 10 120 4.1E-27 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_05075 9ee7089019a7811c312959c912159331 385 SUPERFAMILY SSF47203 231 384 2.58E-57 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_05075 9ee7089019a7811c312959c912159331 385 Gene3D G3DSA:1.20.140.10 238 385 8.7E-55 T 13-10-2018 RAM_05075 9ee7089019a7811c312959c912159331 385 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 126 138 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RAM_05075 9ee7089019a7811c312959c912159331 385 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 124 221 1.3E-28 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RAM_05075 9ee7089019a7811c312959c912159331 385 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 341 360 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RAM_05075 9ee7089019a7811c312959c912159331 385 Gene3D G3DSA:1.10.540.10 11 121 4.7E-35 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_12520 b4a7a2b39c97bf8c732b6f1b60144d2b 194 Pfam PF04542 Sigma-70 region 2 28 94 3.2E-10 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_12520 b4a7a2b39c97bf8c732b6f1b60144d2b 194 SMART SM00421 132 186 0.0056 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_12520 b4a7a2b39c97bf8c732b6f1b60144d2b 194 Pfam PF08281 Sigma-70, region 4 128 177 5.9E-16 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_12520 b4a7a2b39c97bf8c732b6f1b60144d2b 194 SUPERFAMILY SSF88946 10 100 2.79E-14 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_12520 b4a7a2b39c97bf8c732b6f1b60144d2b 194 Gene3D G3DSA:1.10.10.10 105 185 2.4E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_12520 b4a7a2b39c97bf8c732b6f1b60144d2b 194 SUPERFAMILY SSF88659 122 182 9.59E-15 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_12520 b4a7a2b39c97bf8c732b6f1b60144d2b 194 Gene3D G3DSA:1.10.1740.10 6 92 7.8E-12 T 13-10-2018 RAM_12520 b4a7a2b39c97bf8c732b6f1b60144d2b 194 ProSitePatterns PS00622 LuxR-type HTH domain signature. 150 177 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_12520 b4a7a2b39c97bf8c732b6f1b60144d2b 194 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 25 182 1.7E-19 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_24420 ba31bcd55d00528d34413abd37c09edb 131 SUPERFAMILY SSF52242 1 127 5.76E-19 T 13-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 RAM_24420 ba31bcd55d00528d34413abd37c09edb 131 Pfam PF02310 B12 binding domain 1 90 5.3E-13 T 13-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 RAM_24420 ba31bcd55d00528d34413abd37c09edb 131 Gene3D G3DSA:3.40.50.280 1 130 2.3E-24 T 13-10-2018 RAM_02265 3083134aa2a5b30ca8c56d0089e1cca2 144 PIRSF PIRSF017371 1 144 2.9E-57 T 13-10-2018 IPR014488 Uncharacterised conserved protein UCP017371 RAM_02265 3083134aa2a5b30ca8c56d0089e1cca2 144 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 4 142 5.1E-20 T 13-10-2018 IPR019587 Polyketide cyclase/dehydrase RAM_02265 3083134aa2a5b30ca8c56d0089e1cca2 144 SUPERFAMILY SSF55961 1 143 1.86E-15 T 13-10-2018 RAM_02265 3083134aa2a5b30ca8c56d0089e1cca2 144 Gene3D G3DSA:3.30.530.20 1 144 2.9E-11 T 13-10-2018 IPR023393 START-like domain superfamily RAM_21480 5db01045e757d79f45c883f9d08cf2fd 485 SUPERFAMILY SSF51126 3 370 1.54E-70 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor RAM_21480 5db01045e757d79f45c883f9d08cf2fd 485 Gene3D G3DSA:2.160.20.10 3 382 5.1E-88 T 13-10-2018 IPR012334 Pectin lyase fold RAM_21480 5db01045e757d79f45c883f9d08cf2fd 485 SMART SM00710 193 215 88.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_21480 5db01045e757d79f45c883f9d08cf2fd 485 SMART SM00710 225 246 8700.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_21480 5db01045e757d79f45c883f9d08cf2fd 485 SMART SM00710 171 192 680.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_21480 5db01045e757d79f45c883f9d08cf2fd 485 SMART SM00710 148 170 23.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_21480 5db01045e757d79f45c883f9d08cf2fd 485 SMART SM00710 269 289 5200.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_21480 5db01045e757d79f45c883f9d08cf2fd 485 Pfam PF12708 Pectate lyase superfamily protein 8 237 5.4E-17 T 13-10-2018 IPR024535 Pectate lyase superfamily protein RAM_35050 f959b04917ee269fc74d5ce75cbee416 669 Pfam PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) 388 632 1.4E-89 T 13-10-2018 IPR019108 Cytochrome c oxidase caa3-type, assembly factor CtaG-related RAM_35050 f959b04917ee269fc74d5ce75cbee416 669 Pfam PF05425 Copper resistance protein D 239 335 5.9E-20 T 13-10-2018 IPR008457 Copper resistance protein D GO:0016021 RAM_20155 39f46148d1a844534ebe3209df3caa82 239 Gene3D G3DSA:1.10.10.10 2 78 1.3E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_20155 39f46148d1a844534ebe3209df3caa82 239 SMART SM00895 99 222 1.5E-19 T 13-10-2018 IPR011711 GntR, C-terminal RAM_20155 39f46148d1a844534ebe3209df3caa82 239 SUPERFAMILY SSF46785 4 74 1.59E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_20155 39f46148d1a844534ebe3209df3caa82 239 SUPERFAMILY SSF48008 98 223 9.68E-23 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_20155 39f46148d1a844534ebe3209df3caa82 239 Gene3D G3DSA:1.20.120.530 93 227 1.7E-23 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_20155 39f46148d1a844534ebe3209df3caa82 239 SMART SM00345 11 70 2.1E-15 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_20155 39f46148d1a844534ebe3209df3caa82 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 44 60 2.5E-8 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_20155 39f46148d1a844534ebe3209df3caa82 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 30 44 2.5E-8 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_20155 39f46148d1a844534ebe3209df3caa82 239 Pfam PF00392 Bacterial regulatory proteins, gntR family 8 70 6.2E-16 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_20155 39f46148d1a844534ebe3209df3caa82 239 Pfam PF07729 FCD domain 99 221 3.1E-23 T 13-10-2018 IPR011711 GntR, C-terminal RAM_23900 b837a6dce71d48aed8fa28d62a99dc36 197 SUPERFAMILY SSF46689 3 80 6.16E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_23900 b837a6dce71d48aed8fa28d62a99dc36 197 SUPERFAMILY SSF48498 82 191 3.14E-11 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_23900 b837a6dce71d48aed8fa28d62a99dc36 197 Gene3D G3DSA:1.10.357.10 58 196 3.9E-21 T 13-10-2018 RAM_23900 b837a6dce71d48aed8fa28d62a99dc36 197 Gene3D G3DSA:1.10.10.60 3 57 2.5E-12 T 13-10-2018 RAM_23900 b837a6dce71d48aed8fa28d62a99dc36 197 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 61 3.1E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_45745 c5f83c2cf9b47d96d8b21734b7b37293 96 SUPERFAMILY SSF46689 4 93 1.15E-19 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_45745 c5f83c2cf9b47d96d8b21734b7b37293 96 Gene3D G3DSA:1.10.10.60 8 94 1.7E-19 T 13-10-2018 RAM_45745 c5f83c2cf9b47d96d8b21734b7b37293 96 Pfam PF01527 Transposase 1 79 1.2E-13 T 13-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 RAM_39735 c5f83c2cf9b47d96d8b21734b7b37293 96 SUPERFAMILY SSF46689 4 93 1.15E-19 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_39735 c5f83c2cf9b47d96d8b21734b7b37293 96 Gene3D G3DSA:1.10.10.60 8 94 1.7E-19 T 13-10-2018 RAM_39735 c5f83c2cf9b47d96d8b21734b7b37293 96 Pfam PF01527 Transposase 1 79 1.2E-13 T 13-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 RAM_39745 b59a2c14f5c504c16917959bdd90b165 374 Pfam PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase 42 359 4.9E-31 T 13-10-2018 IPR002591 Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase GO:0003824 RAM_39745 b59a2c14f5c504c16917959bdd90b165 374 SUPERFAMILY SSF53649 42 371 1.87E-48 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 RAM_39745 b59a2c14f5c504c16917959bdd90b165 374 Gene3D G3DSA:3.40.720.10 34 374 8.2E-38 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 RAM_22740 53275b517acbee948db2bb1821aeb9ae 454 SUPERFAMILY SSF117074 145 225 1.05E-9 T 13-10-2018 RAM_22740 53275b517acbee948db2bb1821aeb9ae 454 SUPERFAMILY SSF117074 362 423 3.01E-9 T 13-10-2018 RAM_22740 53275b517acbee948db2bb1821aeb9ae 454 Gene3D G3DSA:2.60.40.10 362 439 3.4E-10 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_22740 53275b517acbee948db2bb1821aeb9ae 454 Gene3D G3DSA:2.60.40.10 143 256 2.0E-12 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_01740 58b9aac71754015ad581298aa266e355 67 SMART SM00357 3 67 3.8E-31 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 RAM_01740 58b9aac71754015ad581298aa266e355 67 PIRSF PIRSF002599 1 67 4.2E-25 T 13-10-2018 IPR012156 Cold shock, CspA GO:0003676 RAM_01740 58b9aac71754015ad581298aa266e355 67 SUPERFAMILY SSF50249 1 66 1.84E-26 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_01740 58b9aac71754015ad581298aa266e355 67 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 13-10-2018 IPR019844 Cold-shock conserved site RAM_01740 58b9aac71754015ad581298aa266e355 67 Pfam PF00313 'Cold-shock' DNA-binding domain 3 66 1.7E-31 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RAM_01740 58b9aac71754015ad581298aa266e355 67 PRINTS PR00050 Cold shock protein signature 4 19 9.1E-17 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RAM_01740 58b9aac71754015ad581298aa266e355 67 PRINTS PR00050 Cold shock protein signature 40 58 9.1E-17 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RAM_01740 58b9aac71754015ad581298aa266e355 67 PRINTS PR00050 Cold shock protein signature 25 34 9.1E-17 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RAM_01740 58b9aac71754015ad581298aa266e355 67 Gene3D G3DSA:2.40.50.140 1 67 2.7E-31 T 13-10-2018 RAM_20585 9b852c3e78e6ed40d3333cad709a6eb5 329 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 19 273 7.3E-51 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RAM_20585 9b852c3e78e6ed40d3333cad709a6eb5 329 TIGRFAM TIGR03945 PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA 9 307 2.1E-111 T 13-10-2018 IPR023927 2,3-diaminopropionate biosynthesis protein SbnA RAM_20585 9b852c3e78e6ed40d3333cad709a6eb5 329 Gene3D G3DSA:3.40.50.1100 24 298 7.3E-83 T 13-10-2018 RAM_20585 9b852c3e78e6ed40d3333cad709a6eb5 329 SUPERFAMILY SSF53686 19 309 1.19E-69 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RAM_20585 9b852c3e78e6ed40d3333cad709a6eb5 329 Gene3D G3DSA:3.40.50.1100 42 146 7.3E-83 T 13-10-2018 RAM_00535 4d44748f50cc8a682573dd663ff48b14 726 Gene3D G3DSA:3.60.20.40 537 725 5.8E-43 T 13-10-2018 RAM_00535 4d44748f50cc8a682573dd663ff48b14 726 SUPERFAMILY SSF54593 4 118 2.89E-18 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_00535 4d44748f50cc8a682573dd663ff48b14 726 Gene3D G3DSA:1.10.246.130 396 505 8.7E-14 T 13-10-2018 RAM_00535 4d44748f50cc8a682573dd663ff48b14 726 Pfam PF01019 Gamma-glutamyltranspeptidase 166 718 1.7E-103 T 13-10-2018 RAM_00535 4d44748f50cc8a682573dd663ff48b14 726 Gene3D G3DSA:3.10.180.10 1 133 1.0E-16 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_00535 4d44748f50cc8a682573dd663ff48b14 726 SUPERFAMILY SSF56235 135 725 1.47E-121 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RAM_00535 4d44748f50cc8a682573dd663ff48b14 726 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 244 262 2.7E-21 T 13-10-2018 RAM_00535 4d44748f50cc8a682573dd663ff48b14 726 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 381 397 2.7E-21 T 13-10-2018 RAM_00535 4d44748f50cc8a682573dd663ff48b14 726 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 591 606 2.7E-21 T 13-10-2018 RAM_00535 4d44748f50cc8a682573dd663ff48b14 726 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 173 198 2.7E-21 T 13-10-2018 RAM_00535 4d44748f50cc8a682573dd663ff48b14 726 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 537 555 2.7E-21 T 13-10-2018 RAM_26295 99a15bc3a277459f4218d89e97dba40a 126 Pfam PF00072 Response regulator receiver domain 6 118 1.8E-21 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_26295 99a15bc3a277459f4218d89e97dba40a 126 SMART SM00448 4 117 5.8E-18 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_26295 99a15bc3a277459f4218d89e97dba40a 126 SUPERFAMILY SSF52172 3 122 5.41E-27 T 13-10-2018 IPR011006 CheY-like superfamily RAM_26295 99a15bc3a277459f4218d89e97dba40a 126 Gene3D G3DSA:3.40.50.12740 4 125 1.1E-29 T 13-10-2018 RAM_22960 2a5f73691676e2d0a1d65dd8a547b13a 429 SUPERFAMILY SSF53850 20 425 3.86E-66 T 13-10-2018 RAM_22960 2a5f73691676e2d0a1d65dd8a547b13a 429 Gene3D G3DSA:3.40.190.10 52 386 7.9E-109 T 13-10-2018 RAM_22960 2a5f73691676e2d0a1d65dd8a547b13a 429 Gene3D G3DSA:3.40.190.10 150 418 7.9E-109 T 13-10-2018 RAM_22960 2a5f73691676e2d0a1d65dd8a547b13a 429 Pfam PF13416 Bacterial extracellular solute-binding protein 55 364 1.8E-29 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein RAM_34855 5f46f5c3b5a3a0ed0b23787b9707b24b 238 Gene3D G3DSA:3.40.50.1000 11 218 2.4E-54 T 13-10-2018 IPR023214 HAD superfamily RAM_34855 5f46f5c3b5a3a0ed0b23787b9707b24b 238 Pfam PF12710 haloacid dehalogenase-like hydrolase 12 192 8.4E-16 T 13-10-2018 RAM_34855 5f46f5c3b5a3a0ed0b23787b9707b24b 238 Gene3D G3DSA:1.10.150.240 25 89 2.4E-54 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 RAM_34855 5f46f5c3b5a3a0ed0b23787b9707b24b 238 SUPERFAMILY SSF56784 7 229 6.34E-35 T 13-10-2018 IPR036412 HAD-like superfamily RAM_27660 530912d0aeb536e7c9d04ae162aade51 239 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 1.5E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_27660 530912d0aeb536e7c9d04ae162aade51 239 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 1.5E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_27660 530912d0aeb536e7c9d04ae162aade51 239 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 1.5E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_27660 530912d0aeb536e7c9d04ae162aade51 239 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_27660 530912d0aeb536e7c9d04ae162aade51 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 2.3E-41 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_27660 530912d0aeb536e7c9d04ae162aade51 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 2.3E-41 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_27660 530912d0aeb536e7c9d04ae162aade51 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 2.3E-41 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_27660 530912d0aeb536e7c9d04ae162aade51 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 2.3E-41 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_27660 530912d0aeb536e7c9d04ae162aade51 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 203 223 2.3E-41 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_27660 530912d0aeb536e7c9d04ae162aade51 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 2.3E-41 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_27660 530912d0aeb536e7c9d04ae162aade51 239 Gene3D G3DSA:3.40.50.720 1 239 1.0E-76 T 13-10-2018 RAM_27660 530912d0aeb536e7c9d04ae162aade51 239 SUPERFAMILY SSF51735 6 239 3.71E-76 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_27660 530912d0aeb536e7c9d04ae162aade51 239 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 239 2.0E-62 T 13-10-2018 RAM_17910 cec06f1f7c85c81560760bcbf5fe0fc4 128 Gene3D G3DSA:3.40.50.1820 2 126 1.2E-22 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_17910 cec06f1f7c85c81560760bcbf5fe0fc4 128 SUPERFAMILY SSF53474 12 124 7.66E-15 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_12450 8de1f2de315c34a4e0339d6733e98375 144 SUPERFAMILY SSF55961 1 144 2.36E-30 T 13-10-2018 RAM_12450 8de1f2de315c34a4e0339d6733e98375 144 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 4 143 9.5E-15 T 13-10-2018 IPR019587 Polyketide cyclase/dehydrase RAM_12450 8de1f2de315c34a4e0339d6733e98375 144 Gene3D G3DSA:3.30.530.20 2 143 7.6E-38 T 13-10-2018 IPR023393 START-like domain superfamily RAM_30660 82ba668e27f891d73c03e833f845fcfe 220 SUPERFAMILY SSF81923 7 38 2.62E-5 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 RAM_30660 82ba668e27f891d73c03e833f845fcfe 220 Gene3D G3DSA:1.10.1780.10 1 174 3.8E-19 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 RAM_30660 82ba668e27f891d73c03e833f845fcfe 220 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 16 39 2.7E-5 T 13-10-2018 IPR004176 Clp, N-terminal RAM_30660 82ba668e27f891d73c03e833f845fcfe 220 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 137 169 2.3 T 13-10-2018 IPR004176 Clp, N-terminal RAM_05385 348a503cee9e35681affb4e62735e6e3 187 Gene3D G3DSA:1.10.340.30 10 187 5.2E-74 T 13-10-2018 RAM_05385 348a503cee9e35681affb4e62735e6e3 187 SUPERFAMILY SSF48150 11 186 9.2E-70 T 13-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 RAM_05385 348a503cee9e35681affb4e62735e6e3 187 Pfam PF03352 Methyladenine glycosylase 15 185 5.1E-70 T 13-10-2018 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 RAM_05385 348a503cee9e35681affb4e62735e6e3 187 TIGRFAM TIGR00624 tag: DNA-3-methyladenine glycosylase I 12 185 8.8E-77 T 13-10-2018 IPR004597 DNA-3-methyladenine glycosylase I GO:0006284|GO:0008725 RAM_18225 e8986b2438f71a75be66ab9a44a09183 397 SUPERFAMILY SSF50974 72 392 2.09E-59 T 13-10-2018 IPR011045 Nitrous oxide reductase, N-terminal Reactome: R-HSA-114608 RAM_18225 e8986b2438f71a75be66ab9a44a09183 397 Gene3D G3DSA:2.130.10.10 64 174 8.5E-10 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RAM_18225 e8986b2438f71a75be66ab9a44a09183 397 Gene3D G3DSA:2.130.10.10 176 394 3.5E-38 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RAM_31040 bd297a05836ef91d3be0e669517ba537 125 PRINTS PR00062 Ribosomal protein L20 signature 42 71 9.3E-38 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_31040 bd297a05836ef91d3be0e669517ba537 125 PRINTS PR00062 Ribosomal protein L20 signature 75 101 9.3E-38 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_31040 bd297a05836ef91d3be0e669517ba537 125 PRINTS PR00062 Ribosomal protein L20 signature 12 41 9.3E-38 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_31040 bd297a05836ef91d3be0e669517ba537 125 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 27.859 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_31040 bd297a05836ef91d3be0e669517ba537 125 Pfam PF00453 Ribosomal protein L20 3 109 5.8E-43 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_31040 bd297a05836ef91d3be0e669517ba537 125 Gene3D G3DSA:1.10.720.90 2 55 1.1E-17 T 13-10-2018 RAM_31040 bd297a05836ef91d3be0e669517ba537 125 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 21 70 1.0E-20 T 13-10-2018 RAM_31040 bd297a05836ef91d3be0e669517ba537 125 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 2 114 5.3E-42 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_31040 bd297a05836ef91d3be0e669517ba537 125 SUPERFAMILY SSF74731 3 115 2.35E-43 T 13-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_31040 bd297a05836ef91d3be0e669517ba537 125 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_31040 bd297a05836ef91d3be0e669517ba537 125 Gene3D G3DSA:1.10.1900.20 56 119 1.8E-26 T 13-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_36980 94a3821e4906cd63b62fbaa3f373bd35 264 Pfam PF00378 Enoyl-CoA hydratase/isomerase 16 227 4.8E-45 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RAM_36980 94a3821e4906cd63b62fbaa3f373bd35 264 SUPERFAMILY SSF52096 14 234 1.77E-62 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_36980 94a3821e4906cd63b62fbaa3f373bd35 264 Gene3D G3DSA:3.90.226.10 10 250 1.2E-65 T 13-10-2018 RAM_10450 b83ce3496cf4e19553e2ce04de900b71 534 Pfam PF00270 DEAD/DEAH box helicase 68 236 2.9E-43 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RAM_10450 b83ce3496cf4e19553e2ce04de900b71 534 SMART SM00487 63 263 2.6E-53 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RAM_10450 b83ce3496cf4e19553e2ce04de900b71 534 SUPERFAMILY SSF52540 115 398 6.08E-66 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_10450 b83ce3496cf4e19553e2ce04de900b71 534 Gene3D G3DSA:3.40.50.300 250 423 6.4E-44 T 13-10-2018 RAM_10450 b83ce3496cf4e19553e2ce04de900b71 534 SMART SM00490 297 378 1.1E-30 T 13-10-2018 IPR001650 Helicase, C-terminal RAM_10450 b83ce3496cf4e19553e2ce04de900b71 534 Gene3D G3DSA:3.40.50.300 34 249 5.9E-73 T 13-10-2018 RAM_10450 b83ce3496cf4e19553e2ce04de900b71 534 Pfam PF00271 Helicase conserved C-terminal domain 281 378 1.5E-24 T 13-10-2018 IPR001650 Helicase, C-terminal RAM_07965 fc42641689c1c90bd4c450d4b0440e4f 350 SUPERFAMILY SSF63380 3 104 2.15E-22 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RAM_07965 fc42641689c1c90bd4c450d4b0440e4f 350 SUPERFAMILY SSF54292 230 348 1.7E-24 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RAM_07965 fc42641689c1c90bd4c450d4b0440e4f 350 SUPERFAMILY SSF52343 92 238 2.75E-34 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RAM_07965 fc42641689c1c90bd4c450d4b0440e4f 350 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 279 339 1.5E-12 T 13-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RAM_07965 fc42641689c1c90bd4c450d4b0440e4f 350 PRINTS PR00410 Phenol hydroxylase reductase family signature 113 132 1.2E-6 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RAM_07965 fc42641689c1c90bd4c450d4b0440e4f 350 PRINTS PR00410 Phenol hydroxylase reductase family signature 208 216 1.2E-6 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RAM_07965 fc42641689c1c90bd4c450d4b0440e4f 350 PRINTS PR00410 Phenol hydroxylase reductase family signature 55 62 1.2E-6 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RAM_07965 fc42641689c1c90bd4c450d4b0440e4f 350 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 297 305 - T 13-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RAM_07965 fc42641689c1c90bd4c450d4b0440e4f 350 Pfam PF00970 Oxidoreductase FAD-binding domain 7 102 2.5E-9 T 13-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 RAM_07965 fc42641689c1c90bd4c450d4b0440e4f 350 Gene3D G3DSA:2.40.30.10 2 100 1.3E-18 T 13-10-2018 RAM_07965 fc42641689c1c90bd4c450d4b0440e4f 350 Pfam PF00175 Oxidoreductase NAD-binding domain 114 222 2.0E-16 T 13-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 RAM_07965 fc42641689c1c90bd4c450d4b0440e4f 350 Gene3D G3DSA:3.40.50.80 108 243 1.1E-29 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RAM_07965 fc42641689c1c90bd4c450d4b0440e4f 350 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 55 62 1.4E-5 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RAM_07965 fc42641689c1c90bd4c450d4b0440e4f 350 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 137 146 1.4E-5 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RAM_07965 fc42641689c1c90bd4c450d4b0440e4f 350 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 113 132 1.4E-5 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RAM_07965 fc42641689c1c90bd4c450d4b0440e4f 350 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 149 160 1.4E-5 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RAM_07965 fc42641689c1c90bd4c450d4b0440e4f 350 Gene3D G3DSA:3.10.20.30 251 350 1.0E-24 T 13-10-2018 IPR012675 Beta-grasp domain superfamily RAM_07965 fc42641689c1c90bd4c450d4b0440e4f 350 TIGRFAM TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit 4 349 1.5E-144 T 13-10-2018 IPR011884 Phenylacetate-CoA oxygenase/reductase, PaaK subunit GO:0010124 RAM_39805 5f43a39d2b7cca0769fb4d37522a5279 333 Pfam PF02733 Dak1 domain 17 327 1.0E-125 T 13-10-2018 IPR004006 DhaK domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 RAM_39805 5f43a39d2b7cca0769fb4d37522a5279 333 Gene3D G3DSA:3.40.50.10440 11 184 3.1E-64 T 13-10-2018 RAM_39805 5f43a39d2b7cca0769fb4d37522a5279 333 TIGRFAM TIGR02363 dhaK1: dihydroxyacetone kinase, DhaK subunit 1 329 3.6E-141 T 13-10-2018 IPR012736 Dihydroxyacetone kinase DhaK, subunit 1 KEGG: 00561+2.7.1.121 RAM_39805 5f43a39d2b7cca0769fb4d37522a5279 333 SUPERFAMILY SSF82549 10 331 1.31E-118 T 13-10-2018 RAM_39805 5f43a39d2b7cca0769fb4d37522a5279 333 Gene3D G3DSA:3.30.1180.20 185 333 6.7E-49 T 13-10-2018 RAM_45315 13e4440d7391f97fbd342ab03cadc1e0 224 Pfam PF13545 Crp-like helix-turn-helix domain 148 221 3.3E-19 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RAM_45315 13e4440d7391f97fbd342ab03cadc1e0 224 SUPERFAMILY SSF46785 145 223 3.33E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_45315 13e4440d7391f97fbd342ab03cadc1e0 224 SMART SM00419 167 215 8.6E-14 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RAM_45315 13e4440d7391f97fbd342ab03cadc1e0 224 SMART SM00100 10 131 1.6E-27 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain RAM_45315 13e4440d7391f97fbd342ab03cadc1e0 224 Gene3D G3DSA:2.60.120.10 1 146 2.0E-46 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_45315 13e4440d7391f97fbd342ab03cadc1e0 224 Gene3D G3DSA:1.10.10.10 147 224 2.6E-34 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_45315 13e4440d7391f97fbd342ab03cadc1e0 224 Pfam PF00027 Cyclic nucleotide-binding domain 29 114 4.2E-24 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain RAM_45315 13e4440d7391f97fbd342ab03cadc1e0 224 PRINTS PR00103 cAMP-dependent protein kinase signature 76 85 7.0E-5 T 13-10-2018 RAM_45315 13e4440d7391f97fbd342ab03cadc1e0 224 PRINTS PR00103 cAMP-dependent protein kinase signature 46 60 7.0E-5 T 13-10-2018 RAM_45315 13e4440d7391f97fbd342ab03cadc1e0 224 PRINTS PR00103 cAMP-dependent protein kinase signature 31 45 7.0E-5 T 13-10-2018 RAM_45315 13e4440d7391f97fbd342ab03cadc1e0 224 PRINTS PR00103 cAMP-dependent protein kinase signature 88 99 7.0E-5 T 13-10-2018 RAM_45315 13e4440d7391f97fbd342ab03cadc1e0 224 SUPERFAMILY SSF51206 4 142 1.1E-36 T 13-10-2018 IPR018490 Cyclic nucleotide-binding-like RAM_14615 678db912e5bb70a6c705405d4ac85d27 491 Gene3D G3DSA:1.10.630.10 44 289 2.0E-25 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_14615 678db912e5bb70a6c705405d4ac85d27 491 Pfam PF00067 Cytochrome P450 57 200 2.3E-5 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_14615 678db912e5bb70a6c705405d4ac85d27 491 SUPERFAMILY SSF48264 49 285 1.57E-21 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_45290 c9f9c829494994aa6fc8c270c1e45d80 394 Gene3D G3DSA:2.40.10.10 277 380 4.7E-20 T 13-10-2018 RAM_45290 c9f9c829494994aa6fc8c270c1e45d80 394 Gene3D G3DSA:2.40.10.10 184 274 2.0E-21 T 13-10-2018 RAM_45290 c9f9c829494994aa6fc8c270c1e45d80 394 PRINTS PR00834 HtrA/DegQ protease family signature 245 265 1.2E-9 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAM_45290 c9f9c829494994aa6fc8c270c1e45d80 394 PRINTS PR00834 HtrA/DegQ protease family signature 324 341 1.2E-9 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAM_45290 c9f9c829494994aa6fc8c270c1e45d80 394 PRINTS PR00834 HtrA/DegQ protease family signature 284 308 1.2E-9 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAM_45290 c9f9c829494994aa6fc8c270c1e45d80 394 PRINTS PR00834 HtrA/DegQ protease family signature 225 237 1.2E-9 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAM_45290 c9f9c829494994aa6fc8c270c1e45d80 394 Pfam PF02674 Colicin V production protein 4 144 4.4E-15 T 13-10-2018 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 RAM_45290 c9f9c829494994aa6fc8c270c1e45d80 394 SUPERFAMILY SSF50494 191 373 1.54E-34 T 13-10-2018 IPR009003 Peptidase S1, PA clan RAM_45290 c9f9c829494994aa6fc8c270c1e45d80 394 Pfam PF13365 Trypsin-like peptidase domain 217 353 7.4E-23 T 13-10-2018 RAM_10990 1f59bd67cef6cb183e6304e0525f0762 289 Gene3D G3DSA:3.40.1090.10 105 198 1.4E-14 T 13-10-2018 RAM_10990 1f59bd67cef6cb183e6304e0525f0762 289 Gene3D G3DSA:3.40.1090.10 6 101 2.6E-15 T 13-10-2018 RAM_10990 1f59bd67cef6cb183e6304e0525f0762 289 Pfam PF01734 Patatin-like phospholipase 13 182 3.4E-25 T 13-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 RAM_10990 1f59bd67cef6cb183e6304e0525f0762 289 SUPERFAMILY SSF52151 9 205 1.36E-47 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RAM_22640 9361f840bf7cdd1be97c4478308c7d02 259 Pfam PF01478 Type IV leader peptidase family 103 213 4.0E-13 T 13-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 RAM_22640 9361f840bf7cdd1be97c4478308c7d02 259 Pfam PF06750 Bacterial Peptidase A24 N-terminal domain 10 92 4.3E-34 T 13-10-2018 IPR010627 Peptidase A24A, N-terminal RAM_38115 be8ffae81857b4bee70bda3eef64b8fb 352 SMART SM00354 4 74 3.3E-20 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_38115 be8ffae81857b4bee70bda3eef64b8fb 352 ProSitePatterns PS00356 LacI-type HTH domain signature. 7 25 - T 13-10-2018 RAM_38115 be8ffae81857b4bee70bda3eef64b8fb 352 SUPERFAMILY SSF53822 63 338 5.3E-69 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_38115 be8ffae81857b4bee70bda3eef64b8fb 352 Gene3D G3DSA:1.10.260.40 2 61 1.4E-18 T 13-10-2018 RAM_38115 be8ffae81857b4bee70bda3eef64b8fb 352 Gene3D G3DSA:3.40.50.2300 65 326 7.0E-76 T 13-10-2018 RAM_38115 be8ffae81857b4bee70bda3eef64b8fb 352 Pfam PF13377 Periplasmic binding protein-like domain 171 334 7.7E-36 T 13-10-2018 RAM_38115 be8ffae81857b4bee70bda3eef64b8fb 352 Gene3D G3DSA:3.40.50.2300 163 331 7.0E-76 T 13-10-2018 RAM_38115 be8ffae81857b4bee70bda3eef64b8fb 352 Pfam PF00356 Bacterial regulatory proteins, lacI family 7 51 7.8E-13 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_38115 be8ffae81857b4bee70bda3eef64b8fb 352 SUPERFAMILY SSF47413 6 60 8.81E-14 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_45440 9fa1862aa41f13dd37fd947f1c278144 256 SUPERFAMILY SSF53335 15 209 1.84E-39 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_45440 9fa1862aa41f13dd37fd947f1c278144 256 Pfam PF08241 Methyltransferase domain 40 134 2.3E-25 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 RAM_45440 9fa1862aa41f13dd37fd947f1c278144 256 Gene3D G3DSA:3.40.50.150 3 211 9.1E-41 T 13-10-2018 RAM_35750 f131adac0dc45ebd624c7c97d6b13dfb 230 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 113 141 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_35750 f131adac0dc45ebd624c7c97d6b13dfb 230 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 36 226 2.1E-45 T 13-10-2018 RAM_35750 f131adac0dc45ebd624c7c97d6b13dfb 230 SUPERFAMILY SSF51735 3 226 2.67E-65 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_35750 f131adac0dc45ebd624c7c97d6b13dfb 230 Gene3D G3DSA:3.40.50.720 2 227 8.3E-70 T 13-10-2018 RAM_35750 f131adac0dc45ebd624c7c97d6b13dfb 230 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 201 5.0E-4 T 13-10-2018 RAM_35750 f131adac0dc45ebd624c7c97d6b13dfb 230 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 126 145 1.9E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_35750 f131adac0dc45ebd624c7c97d6b13dfb 230 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 53 64 1.9E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_35750 f131adac0dc45ebd624c7c97d6b13dfb 230 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 106 114 1.9E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_35750 f131adac0dc45ebd624c7c97d6b13dfb 230 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 100 116 2.3E-42 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_35750 f131adac0dc45ebd624c7c97d6b13dfb 230 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 164 2.3E-42 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_35750 f131adac0dc45ebd624c7c97d6b13dfb 230 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 145 2.3E-42 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_35750 f131adac0dc45ebd624c7c97d6b13dfb 230 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 191 211 2.3E-42 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_35750 f131adac0dc45ebd624c7c97d6b13dfb 230 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 2.3E-42 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_35750 f131adac0dc45ebd624c7c97d6b13dfb 230 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 53 64 2.3E-42 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_10370 94865d1cc76821cda62c1b7512bb0ead 68 Pfam PF13783 Domain of unknown function (DUF4177) 4 66 5.2E-19 T 13-10-2018 IPR025234 Protein of unknown function DUF4177 RAM_44435 39f47d7ec5e6fabeb01344698d27bd08 131 SUPERFAMILY SSF69118 1 125 6.41E-35 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_44435 39f47d7ec5e6fabeb01344698d27bd08 131 Pfam PF02627 Carboxymuconolactone decarboxylase family 33 114 2.2E-20 T 13-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RAM_44435 39f47d7ec5e6fabeb01344698d27bd08 131 Gene3D G3DSA:1.20.1290.10 3 124 1.4E-38 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_32040 7db2397f1f9f9ab683c6a3f86ce6390f 178 SUPERFAMILY SSF160904 3 174 4.05E-41 T 13-10-2018 RAM_32040 7db2397f1f9f9ab683c6a3f86ce6390f 178 Gene3D G3DSA:1.10.3300.10 3 176 3.5E-24 T 13-10-2018 IPR023286 ABATE domain superfamily RAM_32040 7db2397f1f9f9ab683c6a3f86ce6390f 178 Pfam PF07336 Putative stress-induced transcription regulator 10 128 2.9E-19 T 13-10-2018 IPR010852 Putative stress-induced transcription regulator RAM_32040 7db2397f1f9f9ab683c6a3f86ce6390f 178 Pfam PF11706 CGNR zinc finger 132 174 2.6E-17 T 13-10-2018 IPR021005 Zinc finger, CGNR RAM_11715 aede28c1c6e8e103bdaa728667c09938 480 Gene3D G3DSA:1.20.1740.10 14 473 4.8E-49 T 13-10-2018 RAM_11715 aede28c1c6e8e103bdaa728667c09938 480 PIRSF PIRSF006060 1 476 2.3E-59 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RAM_11715 aede28c1c6e8e103bdaa728667c09938 480 Pfam PF13520 Amino acid permease 18 455 7.4E-32 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RAM_46990 3879eb1f9ad20c375c6f5f9badceeb8c 172 Gene3D G3DSA:1.20.1260.10 13 171 9.2E-33 T 13-10-2018 IPR012347 Ferritin-like RAM_46990 3879eb1f9ad20c375c6f5f9badceeb8c 172 Pfam PF03713 Domain of unknown function (DUF305) 25 168 8.4E-27 T 13-10-2018 IPR005183 Domain of unknown function DUF305 RAM_24920 b40a6a85a109bb6dd42157e7f2ac9d36 500 PIRSF PIRSF018077 8 496 2.0E-203 T 13-10-2018 IPR004347 Pup ligase/deamidase GO:0010498|GO:0019941 MetaCyc: PWY-7893 RAM_24920 b40a6a85a109bb6dd42157e7f2ac9d36 500 TIGRFAM TIGR03688 pupylate_PafA2: proteasome accessory factor PafA2 2 485 6.7E-232 T 13-10-2018 IPR022366 Pup deamidase GO:0008233|GO:0016811 RAM_24920 b40a6a85a109bb6dd42157e7f2ac9d36 500 Pfam PF03136 Pup-ligase protein 3 454 7.6E-181 T 13-10-2018 IPR004347 Pup ligase/deamidase GO:0010498|GO:0019941 MetaCyc: PWY-7893 RAM_35390 6ca95ce01fc90e2fac97b46477689e57 68 SUPERFAMILY SSF55008 1 67 1.2E-19 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 RAM_35390 6ca95ce01fc90e2fac97b46477689e57 68 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 5 66 4.3E-18 T 13-10-2018 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 RAM_35390 6ca95ce01fc90e2fac97b46477689e57 68 PRINTS PR00944 Copper ion binding protein signature 15 28 8.8E-11 T 13-10-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 RAM_35390 6ca95ce01fc90e2fac97b46477689e57 68 PRINTS PR00944 Copper ion binding protein signature 53 66 8.8E-11 T 13-10-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 RAM_35390 6ca95ce01fc90e2fac97b46477689e57 68 PRINTS PR00944 Copper ion binding protein signature 3 15 8.8E-11 T 13-10-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 RAM_35390 6ca95ce01fc90e2fac97b46477689e57 68 PRINTS PR00944 Copper ion binding protein signature 28 41 8.8E-11 T 13-10-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 RAM_35390 6ca95ce01fc90e2fac97b46477689e57 68 PRINTS PR00944 Copper ion binding protein signature 41 53 8.8E-11 T 13-10-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 RAM_35390 6ca95ce01fc90e2fac97b46477689e57 68 Gene3D G3DSA:3.30.70.100 3 65 5.0E-21 T 13-10-2018 RAM_35390 6ca95ce01fc90e2fac97b46477689e57 68 Pfam PF00403 Heavy-metal-associated domain 5 64 8.5E-18 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 RAM_35390 6ca95ce01fc90e2fac97b46477689e57 68 ProSitePatterns PS01047 Heavy-metal-associated domain. 8 37 - T 13-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 RAM_09425 08f149f3d82733d4da09f2ce286eb709 269 SUPERFAMILY SSF100950 5 263 2.99E-77 T 13-10-2018 IPR037171 NagB/RpiA transferase-like RAM_09425 08f149f3d82733d4da09f2ce286eb709 269 Gene3D G3DSA:3.40.1080.10 5 263 1.1E-67 T 13-10-2018 RAM_09425 08f149f3d82733d4da09f2ce286eb709 269 Gene3D G3DSA:3.30.30.40 118 154 1.1E-67 T 13-10-2018 RAM_09425 08f149f3d82733d4da09f2ce286eb709 269 Pfam PF01144 Coenzyme A transferase 6 223 3.8E-28 T 13-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 RAM_09425 08f149f3d82733d4da09f2ce286eb709 269 SMART SM00882 4 224 3.6E-46 T 13-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 RAM_19090 f0f69def03b22f7441b7b369b5294029 359 Gene3D G3DSA:1.10.10.10 2 60 3.5E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_19090 f0f69def03b22f7441b7b369b5294029 359 Gene3D G3DSA:3.30.420.40 183 338 2.6E-59 T 13-10-2018 RAM_19090 f0f69def03b22f7441b7b369b5294029 359 Pfam PF00480 ROK family 69 318 3.8E-38 T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 RAM_19090 f0f69def03b22f7441b7b369b5294029 359 SUPERFAMILY SSF53067 66 350 7.26E-38 T 13-10-2018 RAM_19090 f0f69def03b22f7441b7b369b5294029 359 SUPERFAMILY SSF46785 7 58 4.21E-10 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_19090 f0f69def03b22f7441b7b369b5294029 359 Gene3D G3DSA:3.30.420.40 71 341 2.6E-59 T 13-10-2018 RAM_17615 bac3074c3d56b77981d1557e261dd3c3 326 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 128 320 1.0E-30 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_17615 bac3074c3d56b77981d1557e261dd3c3 326 Gene3D G3DSA:1.10.3720.10 99 317 3.6E-17 T 13-10-2018 IPR035906 MetI-like superfamily RAM_17615 bac3074c3d56b77981d1557e261dd3c3 326 SUPERFAMILY SSF161098 105 305 9.16E-14 T 13-10-2018 IPR035906 MetI-like superfamily RAM_12930 3f175d479a77ee3512056f296a9b1051 308 Pfam PF03640 Secreted repeat of unknown function 121 161 2.3E-10 T 13-10-2018 IPR005297 Lipoprotein repeat RAM_12930 3f175d479a77ee3512056f296a9b1051 308 Pfam PF03640 Secreted repeat of unknown function 65 103 1.0E-12 T 13-10-2018 IPR005297 Lipoprotein repeat RAM_12930 3f175d479a77ee3512056f296a9b1051 308 Pfam PF03640 Secreted repeat of unknown function 183 222 5.0E-12 T 13-10-2018 IPR005297 Lipoprotein repeat RAM_12930 3f175d479a77ee3512056f296a9b1051 308 Pfam PF03640 Secreted repeat of unknown function 242 282 3.6E-12 T 13-10-2018 IPR005297 Lipoprotein repeat RAM_22330 f86d4ab071a1dc687def019dabf6299e 216 Pfam PF12840 Helix-turn-helix domain 9 68 8.1E-10 T 13-10-2018 RAM_22330 f86d4ab071a1dc687def019dabf6299e 216 Gene3D G3DSA:1.10.10.10 2 94 8.9E-11 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_22330 f86d4ab071a1dc687def019dabf6299e 216 SUPERFAMILY SSF46785 6 191 3.0E-14 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_07385 f5a777a0d671f105001a7a27a6f855db 140 SUPERFAMILY SSF46785 6 138 9.86E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_07385 f5a777a0d671f105001a7a27a6f855db 140 PRINTS PR00598 Bacterial regulatory protein MarR family signature 116 136 6.5E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_07385 f5a777a0d671f105001a7a27a6f855db 140 PRINTS PR00598 Bacterial regulatory protein MarR family signature 50 66 6.5E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_07385 f5a777a0d671f105001a7a27a6f855db 140 PRINTS PR00598 Bacterial regulatory protein MarR family signature 67 82 6.5E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_07385 f5a777a0d671f105001a7a27a6f855db 140 PRINTS PR00598 Bacterial regulatory protein MarR family signature 86 102 6.5E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_07385 f5a777a0d671f105001a7a27a6f855db 140 SMART SM00347 26 126 4.1E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_07385 f5a777a0d671f105001a7a27a6f855db 140 Pfam PF12802 MarR family 32 85 1.0E-9 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_07385 f5a777a0d671f105001a7a27a6f855db 140 Gene3D G3DSA:1.10.10.10 1 138 4.3E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_18065 95c7f151a71d8df52457f3699b6a5040 358 Pfam PF00144 Beta-lactamase 12 333 5.5E-51 T 13-10-2018 IPR001466 Beta-lactamase-related RAM_18065 95c7f151a71d8df52457f3699b6a5040 358 SUPERFAMILY SSF56601 3 331 3.24E-65 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_18065 95c7f151a71d8df52457f3699b6a5040 358 Gene3D G3DSA:3.40.710.10 2 348 1.8E-75 T 13-10-2018 RAM_18065 95c7f151a71d8df52457f3699b6a5040 358 ProSitePatterns PS00146 Beta-lactamase class-A active site. 53 68 - T 13-10-2018 IPR023650 Beta-lactamase, class-A active site KEGG: 00311+3.5.2.6 RAM_04615 f0d5d0812d52b8a19cb6b23a93866b6a 152 SUPERFAMILY SSF52218 1 148 7.64E-28 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RAM_04615 f0d5d0812d52b8a19cb6b23a93866b6a 152 Gene3D G3DSA:3.40.50.360 2 151 1.4E-19 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RAM_04615 f0d5d0812d52b8a19cb6b23a93866b6a 152 Pfam PF03358 NADPH-dependent FMN reductase 38 124 4.0E-7 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 RAM_04555 5c7106eb461e13a9ac4753337ac3968c 356 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 252 258 - T 13-10-2018 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 Reactome: R-HSA-9033241 RAM_04555 5c7106eb461e13a9ac4753337ac3968c 356 Pfam PF01070 FMN-dependent dehydrogenase 11 355 2.5E-134 T 13-10-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 Reactome: R-HSA-9033241 RAM_04555 5c7106eb461e13a9ac4753337ac3968c 356 Gene3D G3DSA:3.20.20.70 1 356 2.6E-144 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_04555 5c7106eb461e13a9ac4753337ac3968c 356 SUPERFAMILY SSF51395 3 353 2.44E-100 T 13-10-2018 RAM_04555 5c7106eb461e13a9ac4753337ac3968c 356 PIRSF PIRSF000138 1 356 1.3E-133 T 13-10-2018 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 Reactome: R-HSA-9033241 RAM_20590 14001a18440683617f50cbfdb16f47e1 345 SUPERFAMILY SSF51735 10 327 6.13E-69 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_20590 14001a18440683617f50cbfdb16f47e1 345 Gene3D G3DSA:3.30.1780.10 17 323 1.7E-89 T 13-10-2018 IPR023401 Ornithine cyclodeaminase, N-terminal Reactome: R-HSA-71064 RAM_20590 14001a18440683617f50cbfdb16f47e1 345 PIRSF PIRSF001439 4 333 3.1E-78 T 13-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 RAM_20590 14001a18440683617f50cbfdb16f47e1 345 TIGRFAM TIGR03944 dehyd_SbnB_fam: 2,3-diaminopropionate biosynthesis protein SbnB 11 335 1.4E-129 T 13-10-2018 IPR023866 2,3-diaminopropionate biosynthesis protein SbnB RAM_20590 14001a18440683617f50cbfdb16f47e1 345 Gene3D G3DSA:3.40.50.720 138 308 1.7E-89 T 13-10-2018 RAM_20590 14001a18440683617f50cbfdb16f47e1 345 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 28 324 1.2E-36 T 13-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 RAM_45890 18ea90c8cdd52f4dc4a11dd1fd972d54 909 Pfam PF01580 FtsK/SpoIIIE family 386 566 1.7E-20 T 13-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 RAM_45890 18ea90c8cdd52f4dc4a11dd1fd972d54 909 Gene3D G3DSA:3.40.50.300 126 358 1.4E-8 T 13-10-2018 RAM_45890 18ea90c8cdd52f4dc4a11dd1fd972d54 909 Gene3D G3DSA:3.40.50.300 369 632 4.5E-50 T 13-10-2018 RAM_45890 18ea90c8cdd52f4dc4a11dd1fd972d54 909 SUPERFAMILY SSF52540 389 592 2.66E-23 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_40715 d4a1fba178a6a64dd4d19b13c5a346d9 661 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 611 628 - T 13-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RAM_40715 d4a1fba178a6a64dd4d19b13c5a346d9 661 Pfam PF00364 Biotin-requiring enzyme 589 653 2.1E-16 T 13-10-2018 IPR000089 Biotin/lipoyl attachment RAM_40715 d4a1fba178a6a64dd4d19b13c5a346d9 661 Gene3D G3DSA:3.30.470.130 1 450 9.7E-195 T 13-10-2018 RAM_40715 d4a1fba178a6a64dd4d19b13c5a346d9 661 SUPERFAMILY SSF56059 83 350 1.57E-66 T 13-10-2018 RAM_40715 d4a1fba178a6a64dd4d19b13c5a346d9 661 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 324 7.6E-77 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RAM_40715 d4a1fba178a6a64dd4d19b13c5a346d9 661 SUPERFAMILY SSF52440 1 113 2.59E-46 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RAM_40715 d4a1fba178a6a64dd4d19b13c5a346d9 661 Gene3D G3DSA:2.40.50.100 580 655 9.2E-22 T 13-10-2018 RAM_40715 d4a1fba178a6a64dd4d19b13c5a346d9 661 SMART SM00878 338 444 6.3E-51 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RAM_40715 d4a1fba178a6a64dd4d19b13c5a346d9 661 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 153 167 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RAM_40715 d4a1fba178a6a64dd4d19b13c5a346d9 661 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 288 295 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RAM_40715 d4a1fba178a6a64dd4d19b13c5a346d9 661 SUPERFAMILY SSF51230 582 654 1.44E-20 T 13-10-2018 IPR011053 Single hybrid motif RAM_40715 d4a1fba178a6a64dd4d19b13c5a346d9 661 Pfam PF02785 Biotin carboxylase C-terminal domain 338 444 3.2E-34 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RAM_40715 d4a1fba178a6a64dd4d19b13c5a346d9 661 SUPERFAMILY SSF51246 333 449 3.35E-37 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 RAM_40715 d4a1fba178a6a64dd4d19b13c5a346d9 661 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 5.5E-44 T 13-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RAM_21945 9a2d958b02722b0845cd91b9be85d823 405 Gene3D G3DSA:3.30.420.40 213 369 6.0E-52 T 13-10-2018 RAM_21945 9a2d958b02722b0845cd91b9be85d823 405 Gene3D G3DSA:1.10.10.10 9 87 1.0E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_21945 9a2d958b02722b0845cd91b9be85d823 405 SUPERFAMILY SSF46785 21 85 1.01E-10 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_21945 9a2d958b02722b0845cd91b9be85d823 405 Pfam PF00480 ROK family 94 383 1.1E-26 T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 RAM_21945 9a2d958b02722b0845cd91b9be85d823 405 SUPERFAMILY SSF53067 94 392 3.99E-34 T 13-10-2018 RAM_21945 9a2d958b02722b0845cd91b9be85d823 405 Gene3D G3DSA:3.30.420.40 99 212 6.0E-52 T 13-10-2018 RAM_06895 6d202ea7a6a36bbfb9923a22abbe28be 859 Pfam PF12770 CHAT domain 616 848 1.6E-39 T 13-10-2018 IPR024983 CHAT domain RAM_06895 6d202ea7a6a36bbfb9923a22abbe28be 859 SUPERFAMILY SSF48452 117 228 1.57E-12 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_06895 6d202ea7a6a36bbfb9923a22abbe28be 859 Gene3D G3DSA:1.25.40.10 4 156 6.1E-7 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_06895 6d202ea7a6a36bbfb9923a22abbe28be 859 Gene3D G3DSA:1.25.40.10 157 309 4.3E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_10375 75d2e740d0ac7bebe2fc7fa35ba5709a 284 SUPERFAMILY SSF55729 78 279 1.8E-19 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_10375 75d2e740d0ac7bebe2fc7fa35ba5709a 284 Gene3D G3DSA:3.40.630.30 79 282 5.1E-21 T 13-10-2018 RAM_10375 75d2e740d0ac7bebe2fc7fa35ba5709a 284 Pfam PF08445 FR47-like protein 214 277 2.2E-10 T 13-10-2018 IPR013653 FR47-like GO:0016747 RAM_10375 75d2e740d0ac7bebe2fc7fa35ba5709a 284 Pfam PF13312 Domain of unknown function (DUF4081) 48 156 1.3E-40 T 13-10-2018 IPR025289 Domain of unknown function DUF4081 RAM_10375 75d2e740d0ac7bebe2fc7fa35ba5709a 284 PIRSF PIRSF021603 2 284 3.5E-119 T 13-10-2018 IPR016794 Uncharacterised conserved protein UCP21603, acetyltransferase-like RAM_29555 020300d433940ad4ede8cd4e55046330 135 Gene3D G3DSA:3.10.450.50 3 134 4.7E-36 T 13-10-2018 RAM_29555 020300d433940ad4ede8cd4e55046330 135 SUPERFAMILY SSF54427 8 132 7.88E-34 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_29555 020300d433940ad4ede8cd4e55046330 135 Pfam PF12680 SnoaL-like domain 13 119 1.5E-16 T 13-10-2018 IPR037401 SnoaL-like domain RAM_26450 ab971da332160e978d83c48e42fed8c1 509 SUPERFAMILY SSF51445 36 388 1.72E-85 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_26450 ab971da332160e978d83c48e42fed8c1 509 SMART SM00637 408 507 2.6E-30 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_26450 ab971da332160e978d83c48e42fed8c1 509 SUPERFAMILY SSF49384 402 503 3.56E-24 T 13-10-2018 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily GO:0030246 RAM_26450 ab971da332160e978d83c48e42fed8c1 509 Gene3D G3DSA:3.20.20.80 35 389 3.9E-124 T 13-10-2018 RAM_26450 ab971da332160e978d83c48e42fed8c1 509 ProSitePatterns PS00659 Glycosyl hydrolases family 5 signature. 188 197 - T 13-10-2018 IPR018087 Glycoside hydrolase, family 5, conserved site GO:0004553|GO:0005975 RAM_26450 ab971da332160e978d83c48e42fed8c1 509 Gene3D G3DSA:2.60.40.290 405 509 9.0E-26 T 13-10-2018 IPR012291 CBM2, carbohydrate-binding domain superfamily GO:0004553|GO:0030247 RAM_26450 ab971da332160e978d83c48e42fed8c1 509 Pfam PF00150 Cellulase (glycosyl hydrolase family 5) 48 363 4.9E-59 T 13-10-2018 IPR001547 Glycoside hydrolase, family 5 GO:0004553|GO:0005975 RAM_26450 ab971da332160e978d83c48e42fed8c1 509 Pfam PF00553 Cellulose binding domain 408 507 5.8E-23 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_23525 6e4c1fa2ca2a3cdce08a27ef24f96c80 222 SUPERFAMILY SSF56784 1 215 1.45E-37 T 13-10-2018 IPR036412 HAD-like superfamily RAM_23525 6e4c1fa2ca2a3cdce08a27ef24f96c80 222 Pfam PF13419 Haloacid dehalogenase-like hydrolase 91 188 9.6E-8 T 13-10-2018 RAM_23525 6e4c1fa2ca2a3cdce08a27ef24f96c80 222 Gene3D G3DSA:3.40.50.1000 3 195 3.4E-54 T 13-10-2018 IPR023214 HAD superfamily RAM_23525 6e4c1fa2ca2a3cdce08a27ef24f96c80 222 Gene3D G3DSA:1.10.150.750 16 87 3.4E-54 T 13-10-2018 RAM_23525 6e4c1fa2ca2a3cdce08a27ef24f96c80 222 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 2 13 7.2E-9 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_23525 6e4c1fa2ca2a3cdce08a27ef24f96c80 222 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 102 115 7.2E-9 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_23525 6e4c1fa2ca2a3cdce08a27ef24f96c80 222 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 177 190 7.2E-9 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_46225 dbc1f0700103b948255fa89b4c5d0174 278 Pfam PF00581 Rhodanese-like domain 149 266 4.6E-18 T 13-10-2018 IPR001763 Rhodanese-like domain RAM_46225 dbc1f0700103b948255fa89b4c5d0174 278 Pfam PF00581 Rhodanese-like domain 9 118 3.4E-15 T 13-10-2018 IPR001763 Rhodanese-like domain RAM_46225 dbc1f0700103b948255fa89b4c5d0174 278 SMART SM00450 144 271 3.6E-20 T 13-10-2018 IPR001763 Rhodanese-like domain RAM_46225 dbc1f0700103b948255fa89b4c5d0174 278 SMART SM00450 8 122 7.9E-21 T 13-10-2018 IPR001763 Rhodanese-like domain RAM_46225 dbc1f0700103b948255fa89b4c5d0174 278 SUPERFAMILY SSF52821 4 137 4.06E-34 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily RAM_46225 dbc1f0700103b948255fa89b4c5d0174 278 Gene3D G3DSA:3.40.250.10 1 142 5.5E-41 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily RAM_46225 dbc1f0700103b948255fa89b4c5d0174 278 SUPERFAMILY SSF52821 149 276 5.89E-35 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily RAM_46225 dbc1f0700103b948255fa89b4c5d0174 278 ProSitePatterns PS00683 Rhodanese C-terminal signature. 255 265 - T 13-10-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927|Reactome: R-HSA-1614558 RAM_46225 dbc1f0700103b948255fa89b4c5d0174 278 Gene3D G3DSA:3.40.250.10 143 277 6.2E-43 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily RAM_37450 1f5b9dd7b03a66efb31d266263126ed7 370 Gene3D G3DSA:3.90.1530.30 43 102 9.6E-10 T 13-10-2018 RAM_37450 1f5b9dd7b03a66efb31d266263126ed7 370 SUPERFAMILY SSF110849 47 136 5.06E-11 T 13-10-2018 IPR036086 ParB/Sulfiredoxin superfamily RAM_37450 1f5b9dd7b03a66efb31d266263126ed7 370 SMART SM00470 31 134 1.9E-7 T 13-10-2018 IPR003115 ParB/Sulfiredoxin RAM_37450 1f5b9dd7b03a66efb31d266263126ed7 370 Pfam PF02195 ParB-like nuclease domain 48 133 2.7E-10 T 13-10-2018 IPR003115 ParB/Sulfiredoxin RAM_36825 4d4b91a2d63f578cb4417335e753fa9c 254 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 95 115 - T 13-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 RAM_36825 4d4b91a2d63f578cb4417335e753fa9c 254 Pfam PF00378 Enoyl-CoA hydratase/isomerase 9 253 1.7E-48 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RAM_36825 4d4b91a2d63f578cb4417335e753fa9c 254 SUPERFAMILY SSF52096 3 254 1.07E-74 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_36825 4d4b91a2d63f578cb4417335e753fa9c 254 Gene3D G3DSA:3.90.226.10 1 196 3.4E-63 T 13-10-2018 RAM_36825 4d4b91a2d63f578cb4417335e753fa9c 254 Gene3D G3DSA:1.10.12.10 197 254 4.2E-25 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal RAM_19705 2fd4540cd58b055b1602364403b16737 153 Gene3D G3DSA:3.10.129.10 1 150 3.0E-50 T 13-10-2018 RAM_19705 2fd4540cd58b055b1602364403b16737 153 SUPERFAMILY SSF54637 9 147 3.32E-37 T 13-10-2018 IPR029069 HotDog domain superfamily RAM_19705 2fd4540cd58b055b1602364403b16737 153 Pfam PF01575 MaoC like domain 18 119 3.2E-27 T 13-10-2018 IPR002539 MaoC-like dehydratase domain RAM_16290 46e54f1aa5ae1b3500616113f37166c4 871 Gene3D G3DSA:3.40.228.10 551 642 3.0E-24 T 13-10-2018 RAM_16290 46e54f1aa5ae1b3500616113f37166c4 871 Gene3D G3DSA:3.40.50.740 322 483 6.7E-56 T 13-10-2018 RAM_16290 46e54f1aa5ae1b3500616113f37166c4 871 Pfam PF00384 Molybdopterin oxidoreductase 1 383 8.8E-16 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_16290 46e54f1aa5ae1b3500616113f37166c4 871 Pfam PF01568 Molydopterin dinucleotide binding domain 697 806 1.4E-10 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 RAM_16290 46e54f1aa5ae1b3500616113f37166c4 871 Gene3D G3DSA:2.40.40.20 643 822 6.0E-54 T 13-10-2018 RAM_16290 46e54f1aa5ae1b3500616113f37166c4 871 SUPERFAMILY SSF53706 1 653 5.23E-186 T 13-10-2018 RAM_16290 46e54f1aa5ae1b3500616113f37166c4 871 SUPERFAMILY SSF50692 633 822 1.29E-32 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily RAM_34510 839d134976030bd8b01efd68f2a235b3 779 Gene3D G3DSA:3.40.50.740 136 594 2.7E-79 T 13-10-2018 RAM_34510 839d134976030bd8b01efd68f2a235b3 779 Pfam PF01568 Molydopterin dinucleotide binding domain 654 759 1.4E-10 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 RAM_34510 839d134976030bd8b01efd68f2a235b3 779 SUPERFAMILY SSF50692 650 771 6.78E-18 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily RAM_34510 839d134976030bd8b01efd68f2a235b3 779 PIRSF PIRSF000144 3 772 0.0 T 13-10-2018 RAM_34510 839d134976030bd8b01efd68f2a235b3 779 Gene3D G3DSA:3.40.228.10 201 423 2.7E-79 T 13-10-2018 RAM_34510 839d134976030bd8b01efd68f2a235b3 779 Pfam PF00384 Molybdopterin oxidoreductase 125 504 1.3E-28 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_34510 839d134976030bd8b01efd68f2a235b3 779 TIGRFAM TIGR01701 Fdhalpha-like: oxidoreductase alpha (molybdopterin) subunit 24 767 8.8E-296 T 13-10-2018 IPR010046 Oxidoreductase alpha (molybdopterin) subunit GO:0008863|GO:0030151|GO:0051539 RAM_34510 839d134976030bd8b01efd68f2a235b3 779 SUPERFAMILY SSF53706 60 645 7.33E-145 T 13-10-2018 RAM_15830 1cef1cdaee68d4dd5465b2a94fecebc4 196 SMART SM00471 22 141 8.3E-6 T 13-10-2018 IPR003607 HD/PDEase domain RAM_15830 1cef1cdaee68d4dd5465b2a94fecebc4 196 SUPERFAMILY SSF109604 19 131 2.25E-16 T 13-10-2018 RAM_15830 1cef1cdaee68d4dd5465b2a94fecebc4 196 Pfam PF01966 HD domain 27 73 1.5E-6 T 13-10-2018 IPR006674 HD domain RAM_15830 1cef1cdaee68d4dd5465b2a94fecebc4 196 Gene3D G3DSA:1.10.3210.10 10 139 2.1E-12 T 13-10-2018 RAM_17955 00e490d37479e220034b339182776a1c 518 SUPERFAMILY SSF110221 362 517 8.5E-42 T 13-10-2018 IPR036195 Alpha-L-arabinofuranosidase B, arabinose-binding domain superfamily GO:0046373|GO:0046556 RAM_17955 00e490d37479e220034b339182776a1c 518 Gene3D G3DSA:2.80.10.50 357 518 2.9E-53 T 13-10-2018 RAM_17955 00e490d37479e220034b339182776a1c 518 Pfam PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain 371 512 2.3E-49 T 13-10-2018 IPR007934 Alpha-L-arabinofuranosidase B, arabinose-binding domain GO:0046373|GO:0046556 RAM_17955 00e490d37479e220034b339182776a1c 518 Gene3D G3DSA:2.60.120.200 37 356 3.0E-154 T 13-10-2018 RAM_17955 00e490d37479e220034b339182776a1c 518 SUPERFAMILY SSF49899 38 353 1.52E-142 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily RAM_17955 00e490d37479e220034b339182776a1c 518 Pfam PF09206 Alpha-L-arabinofuranosidase B, catalytic 39 353 2.4E-147 T 13-10-2018 IPR015289 Alpha-L-arabinofuranosidase B, catalytic GO:0031221|GO:0046556 KEGG: 00520+3.2.1.55 RAM_14520 21f1c38d75cf098302124935a37e3a81 211 SUPERFAMILY SSF55961 16 148 1.6E-30 T 13-10-2018 RAM_14520 21f1c38d75cf098302124935a37e3a81 211 Gene3D G3DSA:3.30.530.20 7 188 3.8E-44 T 13-10-2018 IPR023393 START-like domain superfamily RAM_14520 21f1c38d75cf098302124935a37e3a81 211 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 36 143 2.1E-13 T 13-10-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like RAM_28805 874baee3754b58513fb9beab378915c0 228 Gene3D G3DSA:3.40.50.1820 1 227 1.9E-37 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_28805 874baee3754b58513fb9beab378915c0 228 Pfam PF12697 Alpha/beta hydrolase family 1 213 7.1E-14 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_28805 874baee3754b58513fb9beab378915c0 228 SUPERFAMILY SSF53474 1 223 6.85E-25 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_40565 e7d0686d5c59466d5894b2a6e7cb2b77 403 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 7 401 7.7E-131 T 13-10-2018 IPR002155 Thiolase GO:0016747 RAM_40565 e7d0686d5c59466d5894b2a6e7cb2b77 403 Pfam PF00108 Thiolase, N-terminal domain 6 229 1.4E-46 T 13-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 RAM_40565 e7d0686d5c59466d5894b2a6e7cb2b77 403 Gene3D G3DSA:3.40.47.10 7 300 1.9E-145 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_40565 e7d0686d5c59466d5894b2a6e7cb2b77 403 SUPERFAMILY SSF53901 3 274 6.48E-66 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_40565 e7d0686d5c59466d5894b2a6e7cb2b77 403 ProSitePatterns PS00099 Thiolases active site. 384 397 - T 13-10-2018 IPR020610 Thiolase, active site GO:0016747 RAM_40565 e7d0686d5c59466d5894b2a6e7cb2b77 403 ProSitePatterns PS00737 Thiolases signature 2. 349 365 - T 13-10-2018 IPR020613 Thiolase, conserved site GO:0016747 RAM_40565 e7d0686d5c59466d5894b2a6e7cb2b77 403 Pfam PF02803 Thiolase, C-terminal domain 281 402 4.6E-46 T 13-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 RAM_40565 e7d0686d5c59466d5894b2a6e7cb2b77 403 SUPERFAMILY SSF53901 281 402 4.49E-44 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_40565 e7d0686d5c59466d5894b2a6e7cb2b77 403 PIRSF PIRSF000429 2 403 2.1E-111 T 13-10-2018 IPR002155 Thiolase GO:0016747 RAM_40565 e7d0686d5c59466d5894b2a6e7cb2b77 403 Gene3D G3DSA:3.40.47.10 126 398 1.9E-145 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_31380 eace86f646c74368c1a2d3f89fc30902 378 SUPERFAMILY SSF52540 1 178 2.47E-26 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_31380 eace86f646c74368c1a2d3f89fc30902 378 SUPERFAMILY SSF81301 198 371 8.5E-42 T 13-10-2018 RAM_31380 eace86f646c74368c1a2d3f89fc30902 378 Pfam PF01121 Dephospho-CoA kinase 1 161 3.4E-49 T 13-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 RAM_31380 eace86f646c74368c1a2d3f89fc30902 378 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 1 176 17.242 T 13-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 RAM_31380 eace86f646c74368c1a2d3f89fc30902 378 Gene3D G3DSA:3.30.460.10 195 372 6.2E-37 T 13-10-2018 RAM_31380 eace86f646c74368c1a2d3f89fc30902 378 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 1 161 1.7E-34 T 13-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 RAM_31380 eace86f646c74368c1a2d3f89fc30902 378 Gene3D G3DSA:3.40.50.300 1 179 4.0E-54 T 13-10-2018 RAM_31380 eace86f646c74368c1a2d3f89fc30902 378 Pfam PF04229 GrpB protein 197 364 5.7E-42 T 13-10-2018 IPR007344 GrpB/Dephospho-CoA kinase RAM_21975 a53d82e04ffcf20d1cf381e6e6645d6f 149 ProSitePatterns PS00892 HIT domain signature. 99 117 - T 13-10-2018 IPR019808 Histidine triad, conserved site RAM_21975 a53d82e04ffcf20d1cf381e6e6645d6f 149 Pfam PF01230 HIT domain 24 119 8.2E-22 T 13-10-2018 IPR001310 Histidine triad (HIT) protein RAM_21975 a53d82e04ffcf20d1cf381e6e6645d6f 149 SUPERFAMILY SSF54197 12 147 5.26E-36 T 13-10-2018 IPR036265 HIT-like superfamily RAM_21975 a53d82e04ffcf20d1cf381e6e6645d6f 149 PRINTS PR00332 Histidine triad family signature 106 116 1.8E-10 T 13-10-2018 IPR001310 Histidine triad (HIT) protein RAM_21975 a53d82e04ffcf20d1cf381e6e6645d6f 149 PRINTS PR00332 Histidine triad family signature 17 33 1.8E-10 T 13-10-2018 IPR001310 Histidine triad (HIT) protein RAM_21975 a53d82e04ffcf20d1cf381e6e6645d6f 149 PRINTS PR00332 Histidine triad family signature 38 56 1.8E-10 T 13-10-2018 IPR001310 Histidine triad (HIT) protein RAM_21975 a53d82e04ffcf20d1cf381e6e6645d6f 149 Gene3D G3DSA:3.30.428.10 12 149 7.0E-42 T 13-10-2018 IPR036265 HIT-like superfamily RAM_30315 4e796afd273db6f3db9249a1cbc87fde 514 Pfam PF01580 FtsK/SpoIIIE family 251 441 4.5E-10 T 13-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 RAM_30315 4e796afd273db6f3db9249a1cbc87fde 514 SUPERFAMILY SSF52540 251 492 5.84E-11 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_30315 4e796afd273db6f3db9249a1cbc87fde 514 Gene3D G3DSA:3.40.50.300 250 504 2.7E-32 T 13-10-2018 RAM_19150 5dc868bdb45cbd51448abdab12a0aee2 226 SUPERFAMILY SSF50022 83 219 1.83E-23 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RAM_19150 5dc868bdb45cbd51448abdab12a0aee2 226 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 74 99 1.4E-4 T 13-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal RAM_19150 5dc868bdb45cbd51448abdab12a0aee2 226 Pfam PF00355 Rieske [2Fe-2S] domain 122 196 9.0E-13 T 13-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RAM_19150 5dc868bdb45cbd51448abdab12a0aee2 226 Gene3D G3DSA:2.102.10.10 136 221 1.0E-16 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RAM_32395 ca9c64ff264e4e64dc9fe1fbdb3b744e 454 SUPERFAMILY SSF63411 28 230 4.22E-55 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RAM_32395 ca9c64ff264e4e64dc9fe1fbdb3b744e 454 Pfam PF00675 Insulinase (Peptidase family M16) 37 184 3.6E-37 T 13-10-2018 IPR011765 Peptidase M16, N-terminal RAM_32395 ca9c64ff264e4e64dc9fe1fbdb3b744e 454 Pfam PF05193 Peptidase M16 inactive domain 194 369 9.4E-42 T 13-10-2018 IPR007863 Peptidase M16, C-terminal RAM_32395 ca9c64ff264e4e64dc9fe1fbdb3b744e 454 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 58 81 - T 13-10-2018 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 RAM_32395 ca9c64ff264e4e64dc9fe1fbdb3b744e 454 SUPERFAMILY SSF63411 255 442 5.83E-48 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RAM_32395 ca9c64ff264e4e64dc9fe1fbdb3b744e 454 Gene3D G3DSA:3.30.830.10 28 234 1.3E-67 T 13-10-2018 RAM_32395 ca9c64ff264e4e64dc9fe1fbdb3b744e 454 Gene3D G3DSA:3.30.830.10 251 442 9.6E-55 T 13-10-2018 RAM_03890 fea6fe432eff0590ac1ee023a513613e 537 PRINTS PR00298 60kDa chaperonin signature 82 109 4.9E-67 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RAM_03890 fea6fe432eff0590ac1ee023a513613e 537 PRINTS PR00298 60kDa chaperonin signature 266 289 4.9E-67 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RAM_03890 fea6fe432eff0590ac1ee023a513613e 537 PRINTS PR00298 60kDa chaperonin signature 396 417 4.9E-67 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RAM_03890 fea6fe432eff0590ac1ee023a513613e 537 PRINTS PR00298 60kDa chaperonin signature 348 373 4.9E-67 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RAM_03890 fea6fe432eff0590ac1ee023a513613e 537 PRINTS PR00298 60kDa chaperonin signature 26 52 4.9E-67 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RAM_03890 fea6fe432eff0590ac1ee023a513613e 537 Pfam PF00118 TCP-1/cpn60 chaperonin family 22 522 1.4E-86 T 13-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 RAM_03890 fea6fe432eff0590ac1ee023a513613e 537 ProSitePatterns PS00296 Chaperonins cpn60 signature. 403 414 - T 13-10-2018 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RAM_03890 fea6fe432eff0590ac1ee023a513613e 537 SUPERFAMILY SSF52029 183 374 3.31E-73 T 13-10-2018 IPR027409 GroEL-like apical domain superfamily RAM_03890 fea6fe432eff0590ac1ee023a513613e 537 SUPERFAMILY SSF54849 136 203 1.37E-20 T 13-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily RAM_03890 fea6fe432eff0590ac1ee023a513613e 537 TIGRFAM TIGR02348 GroEL: chaperonin GroL 2 524 5.7E-226 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RAM_03890 fea6fe432eff0590ac1ee023a513613e 537 Gene3D G3DSA:3.50.7.10 190 371 4.0E-211 T 13-10-2018 IPR027409 GroEL-like apical domain superfamily RAM_03890 fea6fe432eff0590ac1ee023a513613e 537 Hamap MF_00600 60 kDa chaperonin [groL]. 1 535 38.798 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RAM_03890 fea6fe432eff0590ac1ee023a513613e 537 Gene3D G3DSA:3.30.260.10 136 408 4.0E-211 T 13-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily RAM_03890 fea6fe432eff0590ac1ee023a513613e 537 SUPERFAMILY SSF48592 1 523 2.84E-74 T 13-10-2018 IPR027413 GroEL-like equatorial domain superfamily RAM_03890 fea6fe432eff0590ac1ee023a513613e 537 Gene3D G3DSA:1.10.560.10 6 517 4.0E-211 T 13-10-2018 IPR027413 GroEL-like equatorial domain superfamily RAM_45635 5079682a6ef3b5cd5f2ba3e345f12e95 143 Pfam PF13474 SnoaL-like domain 6 129 1.0E-19 T 13-10-2018 IPR037401 SnoaL-like domain RAM_45635 5079682a6ef3b5cd5f2ba3e345f12e95 143 Gene3D G3DSA:3.10.450.50 1 143 1.4E-37 T 13-10-2018 RAM_45635 5079682a6ef3b5cd5f2ba3e345f12e95 143 SUPERFAMILY SSF54427 3 126 7.67E-27 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_45635 5079682a6ef3b5cd5f2ba3e345f12e95 143 TIGRFAM TIGR02246 TIGR02246: conserved hypothetical protein 2 127 1.8E-10 T 13-10-2018 IPR011944 Steroid delta5-4-isomerase KEGG: 00140+5.3.3.1|KEGG: 00984+5.3.3.1|MetaCyc: PWY-2582|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-699|MetaCyc: PWY-7299 RAM_22460 0b5b5f9600a4ee317ebde1faaea5e72b 407 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 352 361 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RAM_22460 0b5b5f9600a4ee317ebde1faaea5e72b 407 SUPERFAMILY SSF48264 18 392 3.54E-82 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_22460 0b5b5f9600a4ee317ebde1faaea5e72b 407 Gene3D G3DSA:1.10.630.10 3 407 4.8E-117 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_22460 0b5b5f9600a4ee317ebde1faaea5e72b 407 PRINTS PR00359 B-class P450 signature 284 295 1.6E-44 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_22460 0b5b5f9600a4ee317ebde1faaea5e72b 407 PRINTS PR00359 B-class P450 signature 92 103 1.6E-44 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_22460 0b5b5f9600a4ee317ebde1faaea5e72b 407 PRINTS PR00359 B-class P450 signature 142 158 1.6E-44 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_22460 0b5b5f9600a4ee317ebde1faaea5e72b 407 PRINTS PR00359 B-class P450 signature 159 174 1.6E-44 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_22460 0b5b5f9600a4ee317ebde1faaea5e72b 407 PRINTS PR00359 B-class P450 signature 350 359 1.6E-44 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_22460 0b5b5f9600a4ee317ebde1faaea5e72b 407 PRINTS PR00359 B-class P450 signature 301 328 1.6E-44 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_22460 0b5b5f9600a4ee317ebde1faaea5e72b 407 PRINTS PR00359 B-class P450 signature 202 224 1.6E-44 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_22460 0b5b5f9600a4ee317ebde1faaea5e72b 407 PRINTS PR00359 B-class P450 signature 329 344 1.6E-44 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_22460 0b5b5f9600a4ee317ebde1faaea5e72b 407 PRINTS PR00359 B-class P450 signature 359 370 1.6E-44 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_22460 0b5b5f9600a4ee317ebde1faaea5e72b 407 Pfam PF00067 Cytochrome P450 184 270 7.1E-8 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_22460 0b5b5f9600a4ee317ebde1faaea5e72b 407 Pfam PF00067 Cytochrome P450 285 387 5.5E-13 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_09695 ba5c9f96c448fbf7e05217478d970bd7 525 SUPERFAMILY SSF51645 7 524 3.01E-177 T 13-10-2018 IPR011076 Malate synthase-like superfamily GO:0003824 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 RAM_09695 ba5c9f96c448fbf7e05217478d970bd7 525 Pfam PF01274 Malate synthase 7 524 1.6E-189 T 13-10-2018 IPR001465 Malate synthase GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 RAM_09695 ba5c9f96c448fbf7e05217478d970bd7 525 Gene3D G3DSA:3.20.20.360 1 406 6.7E-182 T 13-10-2018 RAM_09695 ba5c9f96c448fbf7e05217478d970bd7 525 PIRSF PIRSF001363 1 525 7.4E-228 T 13-10-2018 IPR006252 Malate synthase A GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 RAM_09695 ba5c9f96c448fbf7e05217478d970bd7 525 Gene3D G3DSA:1.20.1220.12 410 524 9.0E-40 T 13-10-2018 RAM_09695 ba5c9f96c448fbf7e05217478d970bd7 525 TIGRFAM TIGR01344 malate_syn_A: malate synthase A 18 524 4.4E-229 T 13-10-2018 IPR006252 Malate synthase A GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 RAM_09695 ba5c9f96c448fbf7e05217478d970bd7 525 ProSitePatterns PS00510 Malate synthase signature. 261 276 - T 13-10-2018 IPR019830 Malate synthase, conserved site GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 RAM_14645 63a1e03326c204fa7b306b6098dd8745 279 SUPERFAMILY SSF52096 2 262 1.3E-76 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_14645 63a1e03326c204fa7b306b6098dd8745 279 Gene3D G3DSA:1.10.12.10 207 265 7.9E-8 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal RAM_14645 63a1e03326c204fa7b306b6098dd8745 279 Pfam PF00378 Enoyl-CoA hydratase/isomerase 14 263 1.0E-49 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RAM_14645 63a1e03326c204fa7b306b6098dd8745 279 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 104 124 - T 13-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 RAM_14645 63a1e03326c204fa7b306b6098dd8745 279 Gene3D G3DSA:3.90.226.10 2 205 4.6E-68 T 13-10-2018 RAM_06485 7426fe97f7b35bebc7cc19d12e2ca008 224 Pfam PF00072 Response regulator receiver domain 4 113 1.5E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_06485 7426fe97f7b35bebc7cc19d12e2ca008 224 SUPERFAMILY SSF52172 2 133 3.27E-33 T 13-10-2018 IPR011006 CheY-like superfamily RAM_06485 7426fe97f7b35bebc7cc19d12e2ca008 224 SMART SM00448 2 115 3.7E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_06485 7426fe97f7b35bebc7cc19d12e2ca008 224 SUPERFAMILY SSF46894 143 215 1.02E-20 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_06485 7426fe97f7b35bebc7cc19d12e2ca008 224 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 169 185 6.8E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_06485 7426fe97f7b35bebc7cc19d12e2ca008 224 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 155 169 6.8E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_06485 7426fe97f7b35bebc7cc19d12e2ca008 224 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 185 197 6.8E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_06485 7426fe97f7b35bebc7cc19d12e2ca008 224 Gene3D G3DSA:3.40.50.12740 2 215 3.6E-68 T 13-10-2018 RAM_06485 7426fe97f7b35bebc7cc19d12e2ca008 224 SMART SM00421 152 209 7.0E-23 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_06485 7426fe97f7b35bebc7cc19d12e2ca008 224 Pfam PF00196 Bacterial regulatory proteins, luxR family 154 208 3.8E-18 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_25505 c9e254ee11c174da5c54609a585b1a43 246 SUPERFAMILY SSF53474 8 244 6.12E-43 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_25505 c9e254ee11c174da5c54609a585b1a43 246 Pfam PF01738 Dienelactone hydrolase family 20 242 4.8E-46 T 13-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 RAM_25505 c9e254ee11c174da5c54609a585b1a43 246 Gene3D G3DSA:3.40.50.1820 6 242 2.9E-54 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_25990 be594fed7375b83e81167e6307104e57 415 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 198 394 3.0E-16 T 13-10-2018 IPR013830 SGNH hydrolase-type esterase domain RAM_25990 be594fed7375b83e81167e6307104e57 415 SUPERFAMILY SSF52266 194 399 5.04E-31 T 13-10-2018 RAM_25990 be594fed7375b83e81167e6307104e57 415 Gene3D G3DSA:3.40.50.1110 183 403 3.5E-22 T 13-10-2018 IPR036514 SGNH hydrolase superfamily RAM_15470 b875d96e4badea56d7fd13998c262b82 150 SUPERFAMILY SSF54292 2 87 6.55E-26 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RAM_15470 b875d96e4badea56d7fd13998c262b82 150 Gene3D G3DSA:3.10.20.30 1 74 3.7E-27 T 13-10-2018 IPR012675 Beta-grasp domain superfamily RAM_15470 b875d96e4badea56d7fd13998c262b82 150 SUPERFAMILY SSF47741 83 145 1.03E-27 T 13-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily RAM_15470 b875d96e4badea56d7fd13998c262b82 150 Gene3D G3DSA:1.10.150.120 75 149 7.8E-29 T 13-10-2018 RAM_15470 b875d96e4badea56d7fd13998c262b82 150 Pfam PF01799 [2Fe-2S] binding domain 72 140 5.1E-28 T 13-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RAM_15470 b875d96e4badea56d7fd13998c262b82 150 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 39 47 - T 13-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RAM_15470 b875d96e4badea56d7fd13998c262b82 150 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 6 62 2.1E-9 T 13-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RAM_27235 1781421255e85698278376013cd5c520 147 Gene3D G3DSA:1.10.10.10 4 135 9.9E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_27235 1781421255e85698278376013cd5c520 147 Pfam PF12802 MarR family 33 85 8.9E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_27235 1781421255e85698278376013cd5c520 147 SMART SM00347 22 121 1.5E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_27235 1781421255e85698278376013cd5c520 147 SUPERFAMILY SSF46785 5 132 1.85E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_16250 94e1b064580b4f380f0ac562b43046f4 369 SMART SM00420 7 59 4.5E-17 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RAM_16250 94e1b064580b4f380f0ac562b43046f4 369 Gene3D G3DSA:3.40.50.2300 189 357 5.7E-46 T 13-10-2018 RAM_16250 94e1b064580b4f380f0ac562b43046f4 369 Gene3D G3DSA:1.10.10.10 9 59 1.7E-7 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_16250 94e1b064580b4f380f0ac562b43046f4 369 ProSitePatterns PS00894 DeoR-type HTH domain signature. 7 41 - T 13-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 RAM_16250 94e1b064580b4f380f0ac562b43046f4 369 SUPERFAMILY SSF53822 85 364 2.9E-34 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_16250 94e1b064580b4f380f0ac562b43046f4 369 SUPERFAMILY SSF46785 5 61 4.67E-13 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_16250 94e1b064580b4f380f0ac562b43046f4 369 Pfam PF13377 Periplasmic binding protein-like domain 197 360 9.8E-29 T 13-10-2018 RAM_16250 94e1b064580b4f380f0ac562b43046f4 369 Pfam PF08220 DeoR-like helix-turn-helix domain 7 60 4.0E-16 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RAM_16250 94e1b064580b4f380f0ac562b43046f4 369 Gene3D G3DSA:3.40.50.2300 85 352 5.7E-46 T 13-10-2018 RAM_16250 94e1b064580b4f380f0ac562b43046f4 369 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 25 39 6.0E-9 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RAM_16250 94e1b064580b4f380f0ac562b43046f4 369 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 39 57 6.0E-9 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RAM_13690 207972c10f2f1f08f2d80fda85ae52c4 425 SUPERFAMILY SSF51905 5 231 3.49E-18 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_13690 207972c10f2f1f08f2d80fda85ae52c4 425 Pfam PF13434 L-lysine 6-monooxygenase (NADPH-requiring) 4 333 1.0E-106 T 13-10-2018 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase RAM_13690 207972c10f2f1f08f2d80fda85ae52c4 425 SUPERFAMILY SSF51905 187 399 6.79E-6 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_13690 207972c10f2f1f08f2d80fda85ae52c4 425 Gene3D G3DSA:3.50.50.60 2 417 1.7E-116 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_19395 aeafa9d2ab3d913c359dc6026f7d73a6 259 Gene3D G3DSA:3.90.226.10 1 247 3.6E-75 T 13-10-2018 RAM_19395 aeafa9d2ab3d913c359dc6026f7d73a6 259 Pfam PF00378 Enoyl-CoA hydratase/isomerase 1 187 3.4E-30 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RAM_19395 aeafa9d2ab3d913c359dc6026f7d73a6 259 SUPERFAMILY SSF52096 2 222 1.45E-45 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_06705 6812390491fa1907c70e4dff0cf46869 703 Pfam PF04020 Mycobacterial 4 TMS phage holin, superfamily IV 21 121 1.6E-11 T 13-10-2018 IPR007165 Mycobacterial 4 TMS phage holin, superfamily IV RAM_06705 6812390491fa1907c70e4dff0cf46869 703 SUPERFAMILY SSF53649 155 437 6.25E-15 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 RAM_06705 6812390491fa1907c70e4dff0cf46869 703 Pfam PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase 157 440 6.3E-7 T 13-10-2018 IPR002591 Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase GO:0003824 RAM_16960 f079bcae9681b09a1a2a9ef82d356c1c 276 Pfam PF00089 Trypsin 81 271 3.2E-23 T 13-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 RAM_16960 f079bcae9681b09a1a2a9ef82d356c1c 276 SUPERFAMILY SSF50494 46 276 3.5E-32 T 13-10-2018 IPR009003 Peptidase S1, PA clan RAM_16960 f079bcae9681b09a1a2a9ef82d356c1c 276 Gene3D G3DSA:2.40.10.10 84 276 3.0E-26 T 13-10-2018 RAM_16960 f079bcae9681b09a1a2a9ef82d356c1c 276 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 95 100 - T 13-10-2018 IPR018114 Serine proteases, trypsin family, histidine active site GO:0004252|GO:0006508 RAM_16960 f079bcae9681b09a1a2a9ef82d356c1c 276 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 85 100 4.9E-9 T 13-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 RAM_16960 f079bcae9681b09a1a2a9ef82d356c1c 276 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 221 233 4.9E-9 T 13-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 RAM_16960 f079bcae9681b09a1a2a9ef82d356c1c 276 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 142 156 4.9E-9 T 13-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 RAM_16960 f079bcae9681b09a1a2a9ef82d356c1c 276 SMART SM00020 48 271 1.8E-8 T 13-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 RAM_45535 35c2ce7cdefe4b7bd04ff3e92b413737 172 Gene3D G3DSA:1.10.10.60 1 33 1.5E-16 T 13-10-2018 RAM_45535 35c2ce7cdefe4b7bd04ff3e92b413737 172 Gene3D G3DSA:1.10.357.10 34 172 1.2E-28 T 13-10-2018 RAM_45535 35c2ce7cdefe4b7bd04ff3e92b413737 172 SUPERFAMILY SSF46689 2 37 6.14E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_45535 35c2ce7cdefe4b7bd04ff3e92b413737 172 Pfam PF00440 Bacterial regulatory proteins, tetR family 1 37 7.4E-14 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_39320 2136e360d9836ee270d5d31033c8957e 154 Pfam PF00583 Acetyltransferase (GNAT) family 52 132 7.6E-15 T 13-10-2018 IPR000182 GNAT domain RAM_39320 2136e360d9836ee270d5d31033c8957e 154 SUPERFAMILY SSF55729 6 141 9.43E-26 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_39320 2136e360d9836ee270d5d31033c8957e 154 Gene3D G3DSA:3.40.630.30 4 154 9.0E-41 T 13-10-2018 RAM_15585 de1d445e7c3b0d37f580a0495c074b88 130 SUPERFAMILY SSF46785 11 116 5.77E-29 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_15585 de1d445e7c3b0d37f580a0495c074b88 130 Pfam PF01638 HxlR-like helix-turn-helix 27 107 1.5E-23 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type RAM_15585 de1d445e7c3b0d37f580a0495c074b88 130 Gene3D G3DSA:1.10.10.10 2 126 1.5E-35 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_15235 98732a199075a148b483901e019a0eee 289 TIGRFAM TIGR03564 F420_MSMEG_4879: F420-dependent oxidoreductase, MSMEG_4879 family 17 271 1.8E-83 T 13-10-2018 IPR019910 Luciferase-like, F420-dependent oxidoreductase, MSMEG4879, predicted RAM_15235 98732a199075a148b483901e019a0eee 289 SUPERFAMILY SSF51679 6 288 3.27E-46 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_15235 98732a199075a148b483901e019a0eee 289 Gene3D G3DSA:3.20.20.30 10 288 8.2E-46 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_15235 98732a199075a148b483901e019a0eee 289 Pfam PF00296 Luciferase-like monooxygenase 13 267 2.6E-37 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_38360 2bcc111913add54473b7e9c08453cd0d 215 SUPERFAMILY SSF54637 11 196 3.13E-39 T 13-10-2018 IPR029069 HotDog domain superfamily RAM_38360 2bcc111913add54473b7e9c08453cd0d 215 Gene3D G3DSA:1.20.58.350 22 68 1.8E-51 T 13-10-2018 RAM_38360 2bcc111913add54473b7e9c08453cd0d 215 Gene3D G3DSA:3.10.129.10 69 194 1.8E-51 T 13-10-2018 RAM_38360 2bcc111913add54473b7e9c08453cd0d 215 Pfam PF03061 Thioesterase superfamily 116 187 2.7E-8 T 13-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 RAM_40235 5703d0bc8f9dffbe5fb951057612607f 489 SUPERFAMILY SSF51445 40 302 1.77E-21 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_40235 5703d0bc8f9dffbe5fb951057612607f 489 SMART SM00458 363 489 1.2E-34 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_40235 5703d0bc8f9dffbe5fb951057612607f 489 SUPERFAMILY SSF50370 363 487 2.65E-39 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_40235 5703d0bc8f9dffbe5fb951057612607f 489 Gene3D G3DSA:2.80.10.50 451 489 2.7E-10 T 13-10-2018 RAM_40235 5703d0bc8f9dffbe5fb951057612607f 489 Gene3D G3DSA:3.20.20.80 40 306 6.4E-24 T 13-10-2018 RAM_40235 5703d0bc8f9dffbe5fb951057612607f 489 Pfam PF00652 Ricin-type beta-trefoil lectin domain 364 486 2.1E-29 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_40235 5703d0bc8f9dffbe5fb951057612607f 489 Gene3D G3DSA:2.80.10.50 307 403 1.0E-13 T 13-10-2018 RAM_40235 5703d0bc8f9dffbe5fb951057612607f 489 Gene3D G3DSA:2.80.10.50 407 450 1.7E-13 T 13-10-2018 RAM_00335 d46731ffe0561672fa0367a649f162cf 486 SUPERFAMILY SSF53850 20 475 2.53E-108 T 13-10-2018 RAM_00335 d46731ffe0561672fa0367a649f162cf 486 Gene3D G3DSA:3.40.190.10 49 253 2.0E-96 T 13-10-2018 RAM_00335 d46731ffe0561672fa0367a649f162cf 486 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 66 393 5.8E-78 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain RAM_00335 d46731ffe0561672fa0367a649f162cf 486 PIRSF PIRSF002741 3 480 6.1E-78 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RAM_00335 d46731ffe0561672fa0367a649f162cf 486 Gene3D G3DSA:3.10.105.10 254 437 2.0E-96 T 13-10-2018 RAM_03900 58d8dad797e62ff941532882d4fdc36b 314 SUPERFAMILY SSF46955 13 78 3.48E-12 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily RAM_03900 58d8dad797e62ff941532882d4fdc36b 314 SMART SM00422 12 81 6.3E-7 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_03900 58d8dad797e62ff941532882d4fdc36b 314 Pfam PF13411 MerR HTH family regulatory protein 15 77 1.7E-13 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_03900 58d8dad797e62ff941532882d4fdc36b 314 Gene3D G3DSA:3.40.50.280 192 306 1.0E-6 T 13-10-2018 RAM_03900 58d8dad797e62ff941532882d4fdc36b 314 Gene3D G3DSA:1.10.1660.10 6 81 4.9E-19 T 13-10-2018 RAM_45450 b86d1258ddebac34c5628761f0ed7576 61 Gene3D G3DSA:3.30.429.10 1 61 5.0E-20 T 13-10-2018 IPR014347 Tautomerase/MIF superfamily RAM_45450 b86d1258ddebac34c5628761f0ed7576 61 SUPERFAMILY SSF55331 1 60 1.7E-16 T 13-10-2018 IPR014347 Tautomerase/MIF superfamily RAM_45450 b86d1258ddebac34c5628761f0ed7576 61 Pfam PF01361 Tautomerase enzyme 2 57 7.9E-12 T 13-10-2018 IPR004370 4-oxalocrotonate tautomerase GO:0006725|GO:0016853 RAM_18215 92941e53477a01ef9d37e6b388361931 402 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 7 27 6.8E-4 T 13-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal RAM_18215 92941e53477a01ef9d37e6b388361931 402 Pfam PF07394 Protein of unknown function (DUF1501) 217 399 4.7E-24 T 13-10-2018 IPR010869 Protein of unknown function DUF1501 RAM_02560 e6fd30f6d8f1f62bac2f65049b982a0e 322 Pfam PF01578 Cytochrome C assembly protein 108 316 1.2E-44 T 13-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 RAM_02560 e6fd30f6d8f1f62bac2f65049b982a0e 322 TIGRFAM TIGR03144 cytochr_II_ccsB: cytochrome c-type biogenesis protein CcsB 85 319 9.6E-71 T 13-10-2018 IPR017562 Cytochrome c-type biogenesis protein CcsA GO:0017004 RAM_44260 3538128e4548c3daba146d0437c357cb 167 SUPERFAMILY SSF54593 35 164 2.82E-28 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_44260 3538128e4548c3daba146d0437c357cb 167 Gene3D G3DSA:3.10.180.10 31 166 1.5E-28 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_44260 3538128e4548c3daba146d0437c357cb 167 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 36 153 5.3E-10 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RAM_39495 d9d34ef236960db856ec5c3faa9a7e98 717 SUPERFAMILY SSF48619 101 182 2.53E-9 T 13-10-2018 IPR036444 Phospholipase A2 domain superfamily GO:0004623|GO:0006644|GO:0050482 KEGG: 00564+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 RAM_39495 d9d34ef236960db856ec5c3faa9a7e98 717 Gene3D G3DSA:1.20.90.10 94 185 7.8E-8 T 13-10-2018 IPR036444 Phospholipase A2 domain superfamily GO:0004623|GO:0006644|GO:0050482 KEGG: 00564+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 RAM_39495 d9d34ef236960db856ec5c3faa9a7e98 717 Pfam PF09056 Prokaryotic phospholipase A2 101 181 5.7E-7 T 13-10-2018 IPR015141 Phospholipase A2, prokaryotic/fungal RAM_12630 efad01120f6dd3bbdd8df19478258ec6 302 Pfam PF13406 Transglycosylase SLT domain 214 258 1.8E-6 T 13-10-2018 IPR031304 Transglycosylase SLT domain 2 RAM_12630 efad01120f6dd3bbdd8df19478258ec6 302 SUPERFAMILY SSF53955 119 292 6.86E-36 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily RAM_00265 f5efdd17b65fff36684ce895ad61852f 489 SUPERFAMILY SSF56519 59 138 5.76E-6 T 13-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 RAM_00265 f5efdd17b65fff36684ce895ad61852f 489 SUPERFAMILY SSF56601 140 485 4.27E-78 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_00265 f5efdd17b65fff36684ce895ad61852f 489 Gene3D G3DSA:3.90.1310.10 59 379 3.8E-143 T 13-10-2018 RAM_00265 f5efdd17b65fff36684ce895ad61852f 489 Pfam PF00905 Penicillin binding protein transpeptidase domain 159 482 1.4E-66 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RAM_00265 f5efdd17b65fff36684ce895ad61852f 489 Gene3D G3DSA:3.40.710.10 139 480 3.8E-143 T 13-10-2018 RAM_30980 bbde15d69763e31a501a2ca3716ff862 305 Gene3D G3DSA:3.40.1160.10 13 303 1.1E-99 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RAM_30980 bbde15d69763e31a501a2ca3716ff862 305 PRINTS PR00474 Glutamate 5-kinase family signature 250 270 3.7E-7 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 RAM_30980 bbde15d69763e31a501a2ca3716ff862 305 PRINTS PR00474 Glutamate 5-kinase family signature 199 226 3.7E-7 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 RAM_30980 bbde15d69763e31a501a2ca3716ff862 305 SUPERFAMILY SSF53633 15 301 2.62E-86 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RAM_30980 bbde15d69763e31a501a2ca3716ff862 305 PIRSF PIRSF000728 18 299 1.8E-101 T 13-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 RAM_30980 bbde15d69763e31a501a2ca3716ff862 305 Pfam PF00696 Amino acid kinase family 37 277 5.0E-43 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 RAM_30980 bbde15d69763e31a501a2ca3716ff862 305 Hamap MF_00082 Acetylglutamate kinase [argB]. 35 293 46.596 T 13-10-2018 IPR037528 Acetylglutamate kinase ArgB GO:0003991|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 RAM_30980 bbde15d69763e31a501a2ca3716ff862 305 TIGRFAM TIGR00761 argB: acetylglutamate kinase 37 275 2.8E-79 T 13-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 RAM_05670 e52e6967625f94c66f04c0d81ad4955a 208 SUPERFAMILY SSF46689 10 89 2.79E-21 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_05670 e52e6967625f94c66f04c0d81ad4955a 208 Gene3D G3DSA:1.10.357.10 6 203 4.6E-50 T 13-10-2018 RAM_05670 e52e6967625f94c66f04c0d81ad4955a 208 SUPERFAMILY SSF48498 90 200 8.45E-24 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_05670 e52e6967625f94c66f04c0d81ad4955a 208 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 23 36 1.9E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_05670 e52e6967625f94c66f04c0d81ad4955a 208 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 44 67 1.9E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_05670 e52e6967625f94c66f04c0d81ad4955a 208 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 69 7.7E-17 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_11855 1646a42edd06386d51b240a69f661f86 190 SUPERFAMILY SSF55729 25 183 7.57E-13 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_11855 1646a42edd06386d51b240a69f661f86 190 Pfam PF00583 Acetyltransferase (GNAT) family 25 162 2.1E-4 T 13-10-2018 IPR000182 GNAT domain RAM_11855 1646a42edd06386d51b240a69f661f86 190 Gene3D G3DSA:3.40.630.30 20 172 1.5E-12 T 13-10-2018 RAM_05715 e19319e0cda97e2ed87390e29977db8b 113 SUPERFAMILY SSF50022 8 112 6.75E-35 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RAM_05715 e19319e0cda97e2ed87390e29977db8b 113 Pfam PF13806 Rieske-like [2Fe-2S] domain 8 111 3.5E-36 T 13-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 RAM_05715 e19319e0cda97e2ed87390e29977db8b 113 TIGRFAM TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit 8 111 1.4E-38 T 13-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 RAM_05715 e19319e0cda97e2ed87390e29977db8b 113 Gene3D G3DSA:2.102.10.10 3 112 9.1E-36 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RAM_35095 7d3f6973401992ba6336c4f0785b9650 448 SUPERFAMILY SSF51905 1 382 2.16E-22 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_35095 7d3f6973401992ba6336c4f0785b9650 448 Gene3D G3DSA:3.50.50.60 1 356 2.7E-15 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_38805 6e3a2b656af1f153f2732c87dbd127b8 92 TIGRFAM TIGR01374 soxD: sarcosine oxidase, delta subunit family 3 85 3.1E-37 T 13-10-2018 IPR006279 Sarcosine oxidase, delta subunit, heterotetrameric GO:0008115|GO:0046653 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 RAM_38805 6e3a2b656af1f153f2732c87dbd127b8 92 Pfam PF04267 Sarcosine oxidase, delta subunit family 3 83 2.3E-37 T 13-10-2018 IPR006279 Sarcosine oxidase, delta subunit, heterotetrameric GO:0008115|GO:0046653 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 RAM_38805 6e3a2b656af1f153f2732c87dbd127b8 92 Gene3D G3DSA:3.30.2270.10 1 92 1.1E-38 T 13-10-2018 IPR038561 Sarcosine oxidase subunit delta superfamily KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 RAM_12070 aa10c224e2c7736cffd28621902f9cba 470 Gene3D G3DSA:2.80.10.50 425 469 1.8E-13 T 13-10-2018 RAM_12070 aa10c224e2c7736cffd28621902f9cba 470 Gene3D G3DSA:2.80.10.50 379 424 2.6E-16 T 13-10-2018 RAM_12070 aa10c224e2c7736cffd28621902f9cba 470 Gene3D G3DSA:2.80.10.50 331 378 8.0E-11 T 13-10-2018 RAM_12070 aa10c224e2c7736cffd28621902f9cba 470 Pfam PF04616 Glycosyl hydrolases family 43 45 245 8.2E-20 T 13-10-2018 IPR006710 Glycoside hydrolase, family 43 GO:0004553|GO:0005975 RAM_12070 aa10c224e2c7736cffd28621902f9cba 470 SMART SM00458 331 468 7.5E-17 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_12070 aa10c224e2c7736cffd28621902f9cba 470 Gene3D G3DSA:2.115.10.20 6 328 5.9E-102 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily RAM_12070 aa10c224e2c7736cffd28621902f9cba 470 SUPERFAMILY SSF75005 38 313 1.71E-49 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily RAM_12070 aa10c224e2c7736cffd28621902f9cba 470 SUPERFAMILY SSF50370 333 465 1.91E-45 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_12070 aa10c224e2c7736cffd28621902f9cba 470 Pfam PF00652 Ricin-type beta-trefoil lectin domain 335 465 1.2E-23 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_14990 e329eb9003156c658b3eadbc5935c0f9 168 Pfam PF04978 Protein of unknown function (DUF664) 20 164 1.1E-42 T 13-10-2018 IPR007061 Protein of unknown function DUF664 RAM_14990 e329eb9003156c658b3eadbc5935c0f9 168 Gene3D G3DSA:1.20.120.450 9 164 2.7E-32 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_14990 e329eb9003156c658b3eadbc5935c0f9 168 SUPERFAMILY SSF109854 4 163 2.29E-39 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_08540 dd530a58a679bd87ffca4616310c78cc 302 Gene3D G3DSA:3.40.50.720 92 274 1.1E-69 T 13-10-2018 RAM_08540 dd530a58a679bd87ffca4616310c78cc 302 SUPERFAMILY SSF51735 94 267 5.42E-45 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_08540 dd530a58a679bd87ffca4616310c78cc 302 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 101 267 2.4E-43 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 RAM_08540 dd530a58a679bd87ffca4616310c78cc 302 SUPERFAMILY SSF52283 35 122 6.38E-7 T 13-10-2018 RAM_08540 dd530a58a679bd87ffca4616310c78cc 302 Gene3D G3DSA:3.40.50.720 29 298 1.1E-69 T 13-10-2018 RAM_22520 cbe9fe60e1ff85d84b87401fde437dae 192 Pfam PF12385 Papain-like cysteine protease AvrRpt2 34 171 1.1E-18 T 13-10-2018 IPR022118 Peptidase C70, AvrRpt2 RAM_22520 cbe9fe60e1ff85d84b87401fde437dae 192 Gene3D G3DSA:3.90.70.10 41 187 2.2E-8 T 13-10-2018 RAM_13515 67c1bc65bf480ba3da04721fee4c426f 218 Pfam PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain 6 149 3.4E-21 T 13-10-2018 IPR024344 Mycothiol-dependent maleylpyruvate isomerase, metal-binding domain GO:0046872 RAM_13515 67c1bc65bf480ba3da04721fee4c426f 218 SUPERFAMILY SSF109854 2 151 4.35E-11 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_13515 67c1bc65bf480ba3da04721fee4c426f 218 Gene3D G3DSA:1.20.120.450 1 154 1.8E-13 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_37585 c475eb308dada58b1b3b5bd65c25dfeb 95 Gene3D G3DSA:3.20.20.20 1 95 1.0E-32 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_37585 c475eb308dada58b1b3b5bd65c25dfeb 95 SUPERFAMILY SSF51717 1 93 1.03E-29 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_37585 c475eb308dada58b1b3b5bd65c25dfeb 95 Pfam PF00809 Pterin binding enzyme 1 76 1.4E-20 T 13-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_03250 2a403a451bba0fb2d1aaae108d427565 403 PRINTS PR00359 B-class P450 signature 96 107 1.9E-27 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03250 2a403a451bba0fb2d1aaae108d427565 403 PRINTS PR00359 B-class P450 signature 352 363 1.9E-27 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03250 2a403a451bba0fb2d1aaae108d427565 403 PRINTS PR00359 B-class P450 signature 321 336 1.9E-27 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03250 2a403a451bba0fb2d1aaae108d427565 403 PRINTS PR00359 B-class P450 signature 343 352 1.9E-27 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03250 2a403a451bba0fb2d1aaae108d427565 403 PRINTS PR00359 B-class P450 signature 143 159 1.9E-27 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03250 2a403a451bba0fb2d1aaae108d427565 403 PRINTS PR00359 B-class P450 signature 275 286 1.9E-27 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03250 2a403a451bba0fb2d1aaae108d427565 403 PRINTS PR00359 B-class P450 signature 160 175 1.9E-27 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03250 2a403a451bba0fb2d1aaae108d427565 403 PRINTS PR00359 B-class P450 signature 193 215 1.9E-27 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_03250 2a403a451bba0fb2d1aaae108d427565 403 Pfam PF00067 Cytochrome P450 189 372 4.9E-16 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_03250 2a403a451bba0fb2d1aaae108d427565 403 SUPERFAMILY SSF48264 9 403 3.93E-79 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_03250 2a403a451bba0fb2d1aaae108d427565 403 Gene3D G3DSA:1.10.630.10 4 403 6.4E-102 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_36410 fc2f79e43f11f77f66df3a134583fcf4 268 SUPERFAMILY SSF52540 6 223 7.36E-10 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_36410 fc2f79e43f11f77f66df3a134583fcf4 268 Gene3D G3DSA:3.40.50.300 5 245 2.0E-13 T 13-10-2018 RAM_14225 97312e87d95945cb832a0e0f4eace3a1 404 SUPERFAMILY SSF53748 5 402 4.12E-141 T 13-10-2018 IPR036043 Phosphoglycerate kinase superfamily GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RAM_14225 97312e87d95945cb832a0e0f4eace3a1 404 Gene3D G3DSA:3.40.50.1260 178 392 7.8E-141 T 13-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RAM_14225 97312e87d95945cb832a0e0f4eace3a1 404 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 5 402 40.728 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RAM_14225 97312e87d95945cb832a0e0f4eace3a1 404 PIRSF PIRSF000724 1 404 1.1E-131 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RAM_14225 97312e87d95945cb832a0e0f4eace3a1 404 PRINTS PR00477 Phosphoglycerate kinase family signature 199 218 3.7E-78 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RAM_14225 97312e87d95945cb832a0e0f4eace3a1 404 PRINTS PR00477 Phosphoglycerate kinase family signature 13 29 3.7E-78 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RAM_14225 97312e87d95945cb832a0e0f4eace3a1 404 PRINTS PR00477 Phosphoglycerate kinase family signature 112 127 3.7E-78 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RAM_14225 97312e87d95945cb832a0e0f4eace3a1 404 PRINTS PR00477 Phosphoglycerate kinase family signature 321 346 3.7E-78 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RAM_14225 97312e87d95945cb832a0e0f4eace3a1 404 PRINTS PR00477 Phosphoglycerate kinase family signature 354 365 3.7E-78 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RAM_14225 97312e87d95945cb832a0e0f4eace3a1 404 PRINTS PR00477 Phosphoglycerate kinase family signature 176 198 3.7E-78 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RAM_14225 97312e87d95945cb832a0e0f4eace3a1 404 PRINTS PR00477 Phosphoglycerate kinase family signature 146 168 3.7E-78 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RAM_14225 97312e87d95945cb832a0e0f4eace3a1 404 PRINTS PR00477 Phosphoglycerate kinase family signature 378 395 3.7E-78 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RAM_14225 97312e87d95945cb832a0e0f4eace3a1 404 PRINTS PR00477 Phosphoglycerate kinase family signature 34 56 3.7E-78 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RAM_14225 97312e87d95945cb832a0e0f4eace3a1 404 Pfam PF00162 Phosphoglycerate kinase 14 392 4.5E-143 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RAM_14225 97312e87d95945cb832a0e0f4eace3a1 404 Gene3D G3DSA:3.40.50.1260 14 400 7.8E-141 T 13-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RAM_34115 1c5cf7feb47edd0e0d046ec3f7766405 254 Pfam PF04954 Siderophore-interacting protein 122 236 7.2E-35 T 13-10-2018 IPR007037 Siderophore-interacting protein, C-terminal domain RAM_34115 1c5cf7feb47edd0e0d046ec3f7766405 254 Pfam PF08021 Siderophore-interacting FAD-binding domain 1 115 4.3E-33 T 13-10-2018 IPR013113 FAD-binding 9, siderophore-interacting RAM_34115 1c5cf7feb47edd0e0d046ec3f7766405 254 Gene3D G3DSA:2.40.30.10 1 115 2.6E-33 T 13-10-2018 RAM_34115 1c5cf7feb47edd0e0d046ec3f7766405 254 SUPERFAMILY SSF63380 1 115 1.28E-8 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RAM_34115 1c5cf7feb47edd0e0d046ec3f7766405 254 Gene3D G3DSA:3.40.50.80 118 254 1.5E-45 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RAM_43040 eeabcf74e5451fedd5b7569d907e4ede 414 Pfam PF07690 Major Facilitator Superfamily 31 375 2.7E-42 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_43040 eeabcf74e5451fedd5b7569d907e4ede 414 ProSitePatterns PS00217 Sugar transport proteins signature 2. 121 146 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RAM_43040 eeabcf74e5451fedd5b7569d907e4ede 414 Gene3D G3DSA:1.20.1250.20 23 414 1.9E-68 T 13-10-2018 RAM_43040 eeabcf74e5451fedd5b7569d907e4ede 414 SUPERFAMILY SSF103473 10 411 1.23E-73 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_40495 6bcb20d17109ac9a4757a762783fa941 271 SUPERFAMILY SSF51430 4 269 8.64E-75 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_40495 6bcb20d17109ac9a4757a762783fa941 271 PRINTS PR00069 Aldo-keto reductase signature 204 228 3.3E-7 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_40495 6bcb20d17109ac9a4757a762783fa941 271 PRINTS PR00069 Aldo-keto reductase signature 102 120 3.3E-7 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_40495 6bcb20d17109ac9a4757a762783fa941 271 PRINTS PR00069 Aldo-keto reductase signature 133 150 3.3E-7 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_40495 6bcb20d17109ac9a4757a762783fa941 271 Gene3D G3DSA:3.20.20.100 6 271 1.8E-82 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_40495 6bcb20d17109ac9a4757a762783fa941 271 Pfam PF00248 Aldo/keto reductase family 13 268 4.8E-57 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain RAM_16915 2d10bb07cc05074d49176206d55a40f8 396 SMART SM00267 223 394 4.9E-52 T 13-10-2018 IPR000160 GGDEF domain RAM_16915 2d10bb07cc05074d49176206d55a40f8 396 SUPERFAMILY SSF55073 240 393 1.65E-41 T 13-10-2018 IPR029787 Nucleotide cyclase RAM_16915 2d10bb07cc05074d49176206d55a40f8 396 Pfam PF00990 Diguanylate cyclase, GGDEF domain 234 390 1.2E-40 T 13-10-2018 IPR000160 GGDEF domain RAM_16915 2d10bb07cc05074d49176206d55a40f8 396 Gene3D G3DSA:3.30.70.270 225 394 3.4E-51 T 13-10-2018 RAM_16915 2d10bb07cc05074d49176206d55a40f8 396 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 232 393 2.8E-42 T 13-10-2018 IPR000160 GGDEF domain RAM_24035 d5a05a646cac1cb1fd44ddfeeea33d72 326 Gene3D G3DSA:1.10.150.130 14 107 2.8E-6 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal RAM_24035 d5a05a646cac1cb1fd44ddfeeea33d72 326 Pfam PF00589 Phage integrase family 137 304 3.5E-19 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RAM_24035 d5a05a646cac1cb1fd44ddfeeea33d72 326 Gene3D G3DSA:1.10.443.10 125 312 4.5E-30 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 RAM_24035 d5a05a646cac1cb1fd44ddfeeea33d72 326 SUPERFAMILY SSF56349 8 313 4.12E-36 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RAM_37830 f38394e6909b2eb853f6a7a4c1db58e2 329 Pfam PF12849 PBP superfamily domain 8 221 2.6E-16 T 13-10-2018 IPR024370 PBP domain RAM_37830 f38394e6909b2eb853f6a7a4c1db58e2 329 Gene3D G3DSA:3.40.190.10 60 115 3.7E-20 T 13-10-2018 RAM_37830 f38394e6909b2eb853f6a7a4c1db58e2 329 Gene3D G3DSA:3.40.190.10 116 183 3.7E-20 T 13-10-2018 RAM_37830 f38394e6909b2eb853f6a7a4c1db58e2 329 SUPERFAMILY SSF53850 11 220 6.51E-23 T 13-10-2018 RAM_11365 92d725f2603eb3edfe3c07ca9529cc23 100 SUPERFAMILY SSF140453 4 99 5.89E-10 T 13-10-2018 IPR036689 ESAT-6-like superfamily RAM_11365 92d725f2603eb3edfe3c07ca9529cc23 100 Gene3D G3DSA:1.10.287.1060 1 100 9.5E-14 T 13-10-2018 RAM_30390 7f1a3013dadecdd3705e4e18e3ad3e40 126 Pfam PF01740 STAS domain 46 107 2.2E-6 T 13-10-2018 IPR002645 STAS domain RAM_30390 7f1a3013dadecdd3705e4e18e3ad3e40 126 SUPERFAMILY SSF52091 6 109 2.35E-8 T 13-10-2018 IPR036513 STAS domain superfamily RAM_30390 7f1a3013dadecdd3705e4e18e3ad3e40 126 Gene3D G3DSA:3.30.750.24 3 118 3.6E-16 T 13-10-2018 IPR036513 STAS domain superfamily RAM_15935 ec22d25ce23280d6253c81bb56027a75 326 SUPERFAMILY SSF51556 2 319 3.4E-82 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_15935 ec22d25ce23280d6253c81bb56027a75 326 Pfam PF02126 Phosphotriesterase family 10 318 2.6E-100 T 13-10-2018 IPR001559 Phosphotriesterase GO:0008270|GO:0009056 RAM_15935 ec22d25ce23280d6253c81bb56027a75 326 Gene3D G3DSA:3.20.20.140 1 321 3.7E-107 T 13-10-2018 RAM_20450 f06366d515676670e51f61a0f86540b2 512 Gene3D G3DSA:3.40.50.12780 2 401 7.6E-62 T 13-10-2018 RAM_20450 f06366d515676670e51f61a0f86540b2 512 Pfam PF00501 AMP-binding enzyme 11 408 6.7E-53 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_20450 f06366d515676670e51f61a0f86540b2 512 Pfam PF13193 AMP-binding enzyme C-terminal domain 423 492 2.4E-8 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_20450 f06366d515676670e51f61a0f86540b2 512 SUPERFAMILY SSF56801 5 508 3.27E-87 T 13-10-2018 RAM_20450 f06366d515676670e51f61a0f86540b2 512 Gene3D G3DSA:3.30.300.30 402 511 3.7E-17 T 13-10-2018 RAM_06440 004d5a3b4a2a24c298cdb9471edc0fbb 381 Gene3D G3DSA:2.30.40.10 17 378 8.5E-125 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_06440 004d5a3b4a2a24c298cdb9471edc0fbb 381 Gene3D G3DSA:3.20.20.140 59 340 8.5E-125 T 13-10-2018 RAM_06440 004d5a3b4a2a24c298cdb9471edc0fbb 381 SUPERFAMILY SSF51338 320 380 7.68E-13 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_06440 004d5a3b4a2a24c298cdb9471edc0fbb 381 TIGRFAM TIGR01224 hutI: imidazolonepropionase 23 378 2.2E-104 T 13-10-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RAM_06440 004d5a3b4a2a24c298cdb9471edc0fbb 381 SUPERFAMILY SSF51556 58 339 1.46E-69 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_06440 004d5a3b4a2a24c298cdb9471edc0fbb 381 Hamap MF_00372 Imidazolonepropionase [hutI]. 2 380 41.459 T 13-10-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RAM_06440 004d5a3b4a2a24c298cdb9471edc0fbb 381 SUPERFAMILY SSF51338 13 72 2.36E-8 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_06440 004d5a3b4a2a24c298cdb9471edc0fbb 381 Pfam PF01979 Amidohydrolase family 56 359 6.2E-17 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RAM_43775 1550d287c30d071c7c10a14b2e1c64b8 202 Gene3D G3DSA:3.40.50.300 16 197 8.1E-17 T 13-10-2018 RAM_43775 1550d287c30d071c7c10a14b2e1c64b8 202 Pfam PF03029 Conserved hypothetical ATP binding protein 26 194 3.7E-27 T 13-10-2018 IPR004130 GPN-loop GTPase RAM_43775 1550d287c30d071c7c10a14b2e1c64b8 202 SUPERFAMILY SSF52540 22 193 1.69E-20 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_02130 c97014bd0d91db0b691c329283b2d763 69 SUPERFAMILY SSF88659 39 65 8.5E-6 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_02130 c97014bd0d91db0b691c329283b2d763 69 Pfam PF08281 Sigma-70, region 4 30 68 4.6E-6 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_02130 c97014bd0d91db0b691c329283b2d763 69 Gene3D G3DSA:1.10.10.60 27 69 5.3E-6 T 13-10-2018 RAM_16655 9db732b1c348479a982d0b20c792e21d 141 SUPERFAMILY SSF52091 34 124 2.75E-15 T 13-10-2018 IPR036513 STAS domain superfamily RAM_16655 9db732b1c348479a982d0b20c792e21d 141 Pfam PF13466 STAS domain 38 119 1.1E-10 T 13-10-2018 IPR002645 STAS domain RAM_16655 9db732b1c348479a982d0b20c792e21d 141 Gene3D G3DSA:3.30.750.24 28 130 1.8E-19 T 13-10-2018 IPR036513 STAS domain superfamily RAM_29630 e63ec7bd09eafe5789cf2dcba5d74c42 410 Gene3D G3DSA:3.30.1330.60 273 408 7.1E-19 T 13-10-2018 IPR036737 OmpA-like domain superfamily RAM_29630 e63ec7bd09eafe5789cf2dcba5d74c42 410 Pfam PF00691 OmpA family 296 380 8.2E-11 T 13-10-2018 IPR006665 OmpA-like domain RAM_29630 e63ec7bd09eafe5789cf2dcba5d74c42 410 SUPERFAMILY SSF103088 288 403 4.71E-17 T 13-10-2018 IPR036737 OmpA-like domain superfamily RAM_35840 373a879d9bc5866a3e3aaf899db7faca 387 SUPERFAMILY SSF51395 29 382 8.55E-90 T 13-10-2018 RAM_35840 373a879d9bc5866a3e3aaf899db7faca 387 PIRSF PIRSF000138 23 387 1.1E-122 T 13-10-2018 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 Reactome: R-HSA-9033241 RAM_35840 373a879d9bc5866a3e3aaf899db7faca 387 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 282 288 - T 13-10-2018 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 Reactome: R-HSA-9033241 RAM_35840 373a879d9bc5866a3e3aaf899db7faca 387 Gene3D G3DSA:3.20.20.70 26 387 1.1E-133 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_35840 373a879d9bc5866a3e3aaf899db7faca 387 Pfam PF01070 FMN-dependent dehydrogenase 35 385 4.3E-125 T 13-10-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 Reactome: R-HSA-9033241 RAM_39720 0cb4eb519e8df6b5a9713591a5a32daa 255 SUPERFAMILY SSF53474 5 246 4.09E-59 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_39720 0cb4eb519e8df6b5a9713591a5a32daa 255 PRINTS PR00111 Alpha/beta hydrolase fold signature 193 207 4.2E-11 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_39720 0cb4eb519e8df6b5a9713591a5a32daa 255 PRINTS PR00111 Alpha/beta hydrolase fold signature 29 44 4.2E-11 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_39720 0cb4eb519e8df6b5a9713591a5a32daa 255 PRINTS PR00111 Alpha/beta hydrolase fold signature 75 88 4.2E-11 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_39720 0cb4eb519e8df6b5a9713591a5a32daa 255 PRINTS PR00111 Alpha/beta hydrolase fold signature 89 102 4.2E-11 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_39720 0cb4eb519e8df6b5a9713591a5a32daa 255 Gene3D G3DSA:3.40.50.1820 2 251 3.0E-67 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_39720 0cb4eb519e8df6b5a9713591a5a32daa 255 Pfam PF12697 Alpha/beta hydrolase family 6 242 4.4E-25 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_04895 f4f8747e7b257648f9f832c49715e03e 127 Gene3D G3DSA:3.10.450.50 1 127 2.4E-36 T 13-10-2018 RAM_04895 f4f8747e7b257648f9f832c49715e03e 127 Pfam PF12680 SnoaL-like domain 12 109 1.2E-13 T 13-10-2018 IPR037401 SnoaL-like domain RAM_04895 f4f8747e7b257648f9f832c49715e03e 127 SUPERFAMILY SSF54427 4 117 1.65E-24 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_24395 df3be9978f2eb341aa345049c4296ea9 395 Gene3D G3DSA:3.40.190.10 10 316 4.4E-35 T 13-10-2018 RAM_24395 df3be9978f2eb341aa345049c4296ea9 395 Gene3D G3DSA:3.40.190.10 110 351 4.4E-35 T 13-10-2018 RAM_24395 df3be9978f2eb341aa345049c4296ea9 395 SUPERFAMILY SSF53850 8 365 2.29E-27 T 13-10-2018 RAM_24395 df3be9978f2eb341aa345049c4296ea9 395 Pfam PF01547 Bacterial extracellular solute-binding protein 3 165 1.7E-8 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein RAM_03645 ab25fce0679a5d0c0611d75b48876664 525 Gene3D G3DSA:2.40.50.910 271 349 4.0E-5 T 13-10-2018 RAM_03645 ab25fce0679a5d0c0611d75b48876664 525 Gene3D G3DSA:2.40.50.900 52 165 5.0E-9 T 13-10-2018 RAM_03645 ab25fce0679a5d0c0611d75b48876664 525 Pfam PF05108 Type VII secretion system ESX-1, transport TM domain B 1 510 6.4E-106 T 13-10-2018 IPR007795 Type VII secretion system EccB RAM_03645 ab25fce0679a5d0c0611d75b48876664 525 TIGRFAM TIGR03919 T7SS_EccB: type VII secretion protein EccB 119 497 1.6E-56 T 13-10-2018 IPR007795 Type VII secretion system EccB RAM_10500 7c5b4bcb0387b362ccd0140cb5a0d7b8 366 Gene3D G3DSA:3.30.9.10 79 298 4.4E-74 T 13-10-2018 RAM_10500 7c5b4bcb0387b362ccd0140cb5a0d7b8 366 Pfam PF01266 FAD dependent oxidoreductase 1 335 3.5E-54 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RAM_10500 7c5b4bcb0387b362ccd0140cb5a0d7b8 366 Gene3D G3DSA:3.50.50.60 1 335 4.4E-74 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_10500 7c5b4bcb0387b362ccd0140cb5a0d7b8 366 SUPERFAMILY SSF51905 1 355 1.94E-37 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_10500 7c5b4bcb0387b362ccd0140cb5a0d7b8 366 SUPERFAMILY SSF54373 208 298 1.31E-16 T 13-10-2018 RAM_04355 cb421fb953e68f5fa7e703f66764e314 657 Gene3D G3DSA:2.60.40.1180 293 378 1.4E-23 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta RAM_04355 cb421fb953e68f5fa7e703f66764e314 657 Pfam PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase 410 476 1.8E-8 T 13-10-2018 IPR018905 Alpha-galactosidase, NEW3 domain RAM_04355 cb421fb953e68f5fa7e703f66764e314 657 PRINTS PR00740 Glycosyl hydrolase family 27 signature 160 178 4.4E-65 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_04355 cb421fb953e68f5fa7e703f66764e314 657 PRINTS PR00740 Glycosyl hydrolase family 27 signature 246 267 4.4E-65 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_04355 cb421fb953e68f5fa7e703f66764e314 657 PRINTS PR00740 Glycosyl hydrolase family 27 signature 133 150 4.4E-65 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_04355 cb421fb953e68f5fa7e703f66764e314 657 PRINTS PR00740 Glycosyl hydrolase family 27 signature 225 244 4.4E-65 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_04355 cb421fb953e68f5fa7e703f66764e314 657 PRINTS PR00740 Glycosyl hydrolase family 27 signature 98 119 4.4E-65 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_04355 cb421fb953e68f5fa7e703f66764e314 657 PRINTS PR00740 Glycosyl hydrolase family 27 signature 21 40 4.4E-65 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_04355 cb421fb953e68f5fa7e703f66764e314 657 PRINTS PR00740 Glycosyl hydrolase family 27 signature 57 72 4.4E-65 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_04355 cb421fb953e68f5fa7e703f66764e314 657 Pfam PF08305 NPCBM/NEW2 domain 512 655 4.3E-47 T 13-10-2018 IPR013222 Glycosyl hydrolase family 98, putative carbohydrate-binding module RAM_04355 cb421fb953e68f5fa7e703f66764e314 657 ProSitePatterns PS00512 Alpha-galactosidase signature. 62 78 - T 13-10-2018 IPR000111 Glycoside hydrolase family 27/36, conserved site GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_04355 cb421fb953e68f5fa7e703f66764e314 657 SMART SM00776 508 656 4.6E-65 T 13-10-2018 IPR013222 Glycosyl hydrolase family 98, putative carbohydrate-binding module RAM_04355 cb421fb953e68f5fa7e703f66764e314 657 SUPERFAMILY SSF51011 293 378 8.27E-19 T 13-10-2018 RAM_04355 cb421fb953e68f5fa7e703f66764e314 657 Gene3D G3DSA:3.20.20.70 20 291 5.3E-130 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_04355 cb421fb953e68f5fa7e703f66764e314 657 Pfam PF16499 Alpha galactosidase A 26 290 4.6E-84 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_04355 cb421fb953e68f5fa7e703f66764e314 657 Gene3D G3DSA:2.60.120.1060 506 655 7.2E-46 T 13-10-2018 IPR038637 NPCBM domain superfamily RAM_04355 cb421fb953e68f5fa7e703f66764e314 657 SUPERFAMILY SSF49785 512 655 1.53E-40 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_04355 cb421fb953e68f5fa7e703f66764e314 657 SUPERFAMILY SSF51445 18 290 2.14E-104 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_44250 51fe0f52df2ece270d4d9c8807b5e134 244 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 69 240 2.0E-8 T 13-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 RAM_44250 51fe0f52df2ece270d4d9c8807b5e134 244 SUPERFAMILY SSF56529 9 241 3.14E-66 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 RAM_44250 51fe0f52df2ece270d4d9c8807b5e134 244 Gene3D G3DSA:3.90.850.10 4 243 2.1E-74 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 RAM_35745 cdb4dc24a0815bb15ed2deb009660587 504 SUPERFAMILY SSF56801 4 503 2.88E-121 T 13-10-2018 RAM_35745 cdb4dc24a0815bb15ed2deb009660587 504 Gene3D G3DSA:3.40.50.980 1 234 2.0E-41 T 13-10-2018 RAM_35745 cdb4dc24a0815bb15ed2deb009660587 504 Pfam PF13193 AMP-binding enzyme C-terminal domain 422 494 1.8E-17 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_35745 cdb4dc24a0815bb15ed2deb009660587 504 TIGRFAM TIGR02262 benz_CoA_lig: benzoate-CoA ligase family 4 500 3.1E-127 T 13-10-2018 IPR011957 Benzoate-CoA ligase family GO:0005524|GO:0016405 RAM_35745 cdb4dc24a0815bb15ed2deb009660587 504 Gene3D G3DSA:2.30.38.10 307 415 1.1E-28 T 13-10-2018 RAM_35745 cdb4dc24a0815bb15ed2deb009660587 504 Gene3D G3DSA:3.30.300.30 416 504 2.3E-24 T 13-10-2018 RAM_35745 cdb4dc24a0815bb15ed2deb009660587 504 Pfam PF00501 AMP-binding enzyme 17 413 4.2E-70 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_35745 cdb4dc24a0815bb15ed2deb009660587 504 Gene3D G3DSA:1.10.10.2900 236 306 2.2E-23 T 13-10-2018 RAM_00560 ffbd8759aadedb3f37e64591c7b87d5c 474 Gene3D G3DSA:1.20.1720.10 24 231 2.5E-44 T 13-10-2018 RAM_00560 ffbd8759aadedb3f37e64591c7b87d5c 474 Gene3D G3DSA:1.20.1250.20 285 473 2.5E-11 T 13-10-2018 RAM_00560 ffbd8759aadedb3f37e64591c7b87d5c 474 Pfam PF07690 Major Facilitator Superfamily 28 427 9.3E-47 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_00560 ffbd8759aadedb3f37e64591c7b87d5c 474 SUPERFAMILY SSF103473 20 469 1.31E-58 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_14585 bb14b3be922d021d3d00ddee3a287b56 251 SUPERFAMILY SSF53474 11 222 5.75E-23 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_14585 bb14b3be922d021d3d00ddee3a287b56 251 Pfam PF12146 Serine aminopeptidase, S33 74 152 1.1E-9 T 13-10-2018 IPR022742 Serine aminopeptidase, S33 RAM_14585 bb14b3be922d021d3d00ddee3a287b56 251 Gene3D G3DSA:3.40.50.1820 6 217 4.0E-23 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_43310 9133a1828b1f092dd89086a42c6d0f04 198 SUPERFAMILY SSF48498 85 193 1.44E-26 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_43310 9133a1828b1f092dd89086a42c6d0f04 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 4.2E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_43310 9133a1828b1f092dd89086a42c6d0f04 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 4.2E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_43310 9133a1828b1f092dd89086a42c6d0f04 198 Gene3D G3DSA:1.10.357.10 7 196 3.2E-59 T 13-10-2018 RAM_43310 9133a1828b1f092dd89086a42c6d0f04 198 SUPERFAMILY SSF46689 12 82 1.64E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_43310 9133a1828b1f092dd89086a42c6d0f04 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 63 2.2E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_20385 6eead6af474606c67d69dd0830a83451 562 SMART SM00065 28 178 3.4E-24 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_20385 6eead6af474606c67d69dd0830a83451 562 Pfam PF13185 GAF domain 28 169 4.8E-15 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_20385 6eead6af474606c67d69dd0830a83451 562 Pfam PF13556 PucR C-terminal helix-turn-helix domain 497 553 2.9E-13 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain RAM_20385 6eead6af474606c67d69dd0830a83451 562 Gene3D G3DSA:3.30.450.40 27 178 1.2E-34 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_20385 6eead6af474606c67d69dd0830a83451 562 Gene3D G3DSA:1.10.10.2840 429 559 2.0E-13 T 13-10-2018 RAM_20385 6eead6af474606c67d69dd0830a83451 562 SUPERFAMILY SSF55781 9 189 2.84E-28 T 13-10-2018 RAM_42045 02b67473cb8e15a929a209c0709d3b23 227 Pfam PF03167 Uracil DNA glycosylase superfamily 45 218 5.1E-29 T 13-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 RAM_42045 02b67473cb8e15a929a209c0709d3b23 227 SMART SM00986 45 217 9.6E-27 T 13-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 RAM_42045 02b67473cb8e15a929a209c0709d3b23 227 SMART SM00987 45 217 9.6E-27 T 13-10-2018 RAM_42045 02b67473cb8e15a929a209c0709d3b23 227 SUPERFAMILY SSF52141 4 221 9.48E-44 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 RAM_42045 02b67473cb8e15a929a209c0709d3b23 227 Gene3D G3DSA:3.40.470.10 3 226 2.2E-63 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 RAM_42480 baf3932ccb9f0d73e185923094078ee2 195 Pfam PF13305 WHG domain 79 161 5.0E-17 T 13-10-2018 IPR025996 WHG domain RAM_42480 baf3932ccb9f0d73e185923094078ee2 195 SUPERFAMILY SSF48498 75 184 8.48E-20 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_42480 baf3932ccb9f0d73e185923094078ee2 195 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 51 4.3E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_42480 baf3932ccb9f0d73e185923094078ee2 195 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 7 20 4.3E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_42480 baf3932ccb9f0d73e185923094078ee2 195 SUPERFAMILY SSF46689 3 65 7.7E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_42480 baf3932ccb9f0d73e185923094078ee2 195 Pfam PF00440 Bacterial regulatory proteins, tetR family 7 53 6.7E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_42480 baf3932ccb9f0d73e185923094078ee2 195 Gene3D G3DSA:1.10.357.10 2 186 2.6E-44 T 13-10-2018 RAM_11290 377e68e138a4a962bdba8b2f92de287e 241 SUPERFAMILY SSF52540 4 202 1.7E-35 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_11290 377e68e138a4a962bdba8b2f92de287e 241 Pfam PF13500 AAA domain 4 201 2.0E-31 T 13-10-2018 RAM_11290 377e68e138a4a962bdba8b2f92de287e 241 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 6 170 2.1E-29 T 13-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 RAM_11290 377e68e138a4a962bdba8b2f92de287e 241 PIRSF PIRSF006755 1 217 3.5E-34 T 13-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 RAM_11290 377e68e138a4a962bdba8b2f92de287e 241 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 1 220 22.822 T 13-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 RAM_11290 377e68e138a4a962bdba8b2f92de287e 241 Gene3D G3DSA:3.40.50.300 3 224 2.3E-52 T 13-10-2018 RAM_12895 602aa3b8160d2bb061799195718477f8 76 SUPERFAMILY SSF54862 11 70 2.24E-9 T 13-10-2018 RAM_12895 602aa3b8160d2bb061799195718477f8 76 Pfam PF13459 4Fe-4S single cluster domain 12 69 2.8E-11 T 13-10-2018 RAM_12895 602aa3b8160d2bb061799195718477f8 76 PRINTS PR00352 3Fe-4S ferredoxin signature 14 25 5.9E-5 T 13-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 RAM_12895 602aa3b8160d2bb061799195718477f8 76 PRINTS PR00352 3Fe-4S ferredoxin signature 56 68 5.9E-5 T 13-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 RAM_12895 602aa3b8160d2bb061799195718477f8 76 PRINTS PR00352 3Fe-4S ferredoxin signature 25 35 5.9E-5 T 13-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 RAM_12895 602aa3b8160d2bb061799195718477f8 76 Gene3D G3DSA:3.30.70.20 10 72 8.5E-15 T 13-10-2018 RAM_34635 9ba5abeaab60c99ae6133c4da2f83df3 254 SUPERFAMILY SSF51182 38 212 4.26E-10 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RAM_08905 2ef7cdd76c482fc11ff1e1b8f4081c0e 158 Pfam PF13673 Acetyltransferase (GNAT) domain 44 139 1.4E-10 T 13-10-2018 IPR000182 GNAT domain RAM_08905 2ef7cdd76c482fc11ff1e1b8f4081c0e 158 Gene3D G3DSA:3.40.630.30 3 157 4.9E-36 T 13-10-2018 RAM_08905 2ef7cdd76c482fc11ff1e1b8f4081c0e 158 SUPERFAMILY SSF55729 3 134 1.25E-24 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_20610 e53b86450c735a5e31f034a91275cfb4 398 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 237 346 1.0E-30 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal RAM_20610 e53b86450c735a5e31f034a91275cfb4 398 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 4 229 1.1E-26 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal RAM_20610 e53b86450c735a5e31f034a91275cfb4 398 SUPERFAMILY SSF53901 2 234 2.62E-42 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_20610 e53b86450c735a5e31f034a91275cfb4 398 Gene3D G3DSA:3.40.47.10 245 393 1.9E-40 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_20610 e53b86450c735a5e31f034a91275cfb4 398 SUPERFAMILY SSF53901 200 389 1.49E-57 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_20610 e53b86450c735a5e31f034a91275cfb4 398 SMART SM00825 Beta-ketoacyl synthase 6 392 1.2E-12 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RAM_20610 e53b86450c735a5e31f034a91275cfb4 398 Gene3D G3DSA:3.40.47.10 1 238 2.3E-55 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_16355 85ff4389e53b7a12cbf452678d64e1a9 285 SUPERFAMILY SSF51679 6 280 4.58E-59 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_16355 85ff4389e53b7a12cbf452678d64e1a9 285 Gene3D G3DSA:3.20.20.30 2 282 5.2E-66 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_16355 85ff4389e53b7a12cbf452678d64e1a9 285 TIGRFAM TIGR03619 F420_Rv2161c: probable F420-dependent oxidoreductase, Rv2161c family 23 262 1.0E-72 T 13-10-2018 IPR019921 Luciferase-like, F420-dependent oxidoreductase, Rv2161c, predicted RAM_16355 85ff4389e53b7a12cbf452678d64e1a9 285 Pfam PF00296 Luciferase-like monooxygenase 15 260 1.4E-50 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_28635 dc5109ebe132de0af2a28786d2094185 187 ProSitePatterns PS01081 TetR-type HTH domain signature. 28 59 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RAM_28635 dc5109ebe132de0af2a28786d2094185 187 SUPERFAMILY SSF46689 4 75 6.67E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_28635 dc5109ebe132de0af2a28786d2094185 187 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 59 2.7E-15 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_28635 dc5109ebe132de0af2a28786d2094185 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 1.1E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_28635 dc5109ebe132de0af2a28786d2094185 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 1.1E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_28635 dc5109ebe132de0af2a28786d2094185 187 Gene3D G3DSA:1.10.357.10 1 183 2.2E-22 T 13-10-2018 RAM_22420 56184c70ac7de396ae85c7016ae78cd0 549 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 6 276 8.5E-8 T 13-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 RAM_22420 56184c70ac7de396ae85c7016ae78cd0 549 PIRSF PIRSF000538 3 522 2.5E-59 T 13-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 RAM_22420 56184c70ac7de396ae85c7016ae78cd0 549 Gene3D G3DSA:3.30.420.40 3 280 1.7E-62 T 13-10-2018 RAM_22420 56184c70ac7de396ae85c7016ae78cd0 549 SUPERFAMILY SSF53067 6 280 4.75E-33 T 13-10-2018 RAM_22420 56184c70ac7de396ae85c7016ae78cd0 549 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 289 477 5.1E-41 T 13-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 RAM_22420 56184c70ac7de396ae85c7016ae78cd0 549 TIGRFAM TIGR01234 L-ribulokinase: ribulokinase 6 524 3.4E-237 T 13-10-2018 IPR005929 Ribulokinase GO:0005524|GO:0008741|GO:0019569 KEGG: 00040+2.7.1.16 RAM_22420 56184c70ac7de396ae85c7016ae78cd0 549 SUPERFAMILY SSF53067 282 523 1.39E-56 T 13-10-2018 RAM_22420 56184c70ac7de396ae85c7016ae78cd0 549 Hamap MF_00520 Ribulokinase [araB]. 3 534 45.666 T 13-10-2018 IPR005929 Ribulokinase GO:0005524|GO:0008741|GO:0019569 KEGG: 00040+2.7.1.16 RAM_22420 56184c70ac7de396ae85c7016ae78cd0 549 Gene3D G3DSA:3.30.420.40 282 537 5.5E-73 T 13-10-2018 RAM_15620 f27550c664b06b86c6b4f4d20351ec1d 415 Gene3D G3DSA:3.40.190.10 67 371 4.9E-61 T 13-10-2018 RAM_15620 f27550c664b06b86c6b4f4d20351ec1d 415 Pfam PF13416 Bacterial extracellular solute-binding protein 58 357 1.2E-44 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein RAM_15620 f27550c664b06b86c6b4f4d20351ec1d 415 SUPERFAMILY SSF53850 43 410 1.19E-52 T 13-10-2018 RAM_15620 f27550c664b06b86c6b4f4d20351ec1d 415 Gene3D G3DSA:3.40.190.10 151 404 4.9E-61 T 13-10-2018 RAM_34045 1e881c00bda6992a771f474b5e6fd0a5 496 SUPERFAMILY SSF53720 4 482 1.96E-148 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RAM_34045 1e881c00bda6992a771f474b5e6fd0a5 496 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 6 480 1.9E-210 T 13-10-2018 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00640+1.2.1.27|MetaCyc: PWY-5642|Reactome: R-HSA-70895 RAM_34045 1e881c00bda6992a771f474b5e6fd0a5 496 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 275 286 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 RAM_34045 1e881c00bda6992a771f474b5e6fd0a5 496 Gene3D G3DSA:3.40.309.10 250 449 2.0E-150 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RAM_34045 1e881c00bda6992a771f474b5e6fd0a5 496 Pfam PF00171 Aldehyde dehydrogenase family 20 476 1.2E-141 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RAM_34045 1e881c00bda6992a771f474b5e6fd0a5 496 Gene3D G3DSA:3.40.605.10 24 457 2.0E-150 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RAM_42945 63269e035b299088303b447b5ee11b02 225 Pfam PF13302 Acetyltransferase (GNAT) domain 35 179 1.2E-10 T 13-10-2018 IPR000182 GNAT domain RAM_42945 63269e035b299088303b447b5ee11b02 225 ProSitePatterns PS01322 Phosphotriesterase family signature 1. 146 154 - T 13-10-2018 IPR017947 Aryldialkylphosphatase, zinc-binding site GO:0008270|GO:0009056|GO:0016788 RAM_42945 63269e035b299088303b447b5ee11b02 225 SUPERFAMILY SSF55729 30 202 2.52E-18 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_42945 63269e035b299088303b447b5ee11b02 225 Gene3D G3DSA:3.40.630.30 22 204 1.7E-21 T 13-10-2018 RAM_14290 c934e9c931f8530106a687f122e39df8 95 Pfam PF10824 Excreted virulence factor EspC, type VII ESX diderm 5 82 1.8E-6 T 13-10-2018 IPR022536 ESX-1 secretion-associated protein EspC GO:0009306 RAM_09170 8d64a485c468672d16cdb42b11632ac5 448 Gene3D G3DSA:3.30.590.10 117 447 5.0E-101 T 13-10-2018 RAM_09170 8d64a485c468672d16cdb42b11632ac5 448 SUPERFAMILY SSF54368 3 113 2.09E-15 T 13-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RAM_09170 8d64a485c468672d16cdb42b11632ac5 448 Pfam PF00120 Glutamine synthetase, catalytic domain 115 441 3.9E-103 T 13-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RAM_09170 8d64a485c468672d16cdb42b11632ac5 448 SUPERFAMILY SSF55931 115 446 1.47E-101 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 RAM_09170 8d64a485c468672d16cdb42b11632ac5 448 Gene3D G3DSA:3.10.20.70 2 115 1.4E-6 T 13-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RAM_09170 8d64a485c468672d16cdb42b11632ac5 448 SMART SM01230 114 366 3.6E-98 T 13-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RAM_29120 c610aff5da9465ef6c2668bfacb10eae 265 Pfam PF01614 Bacterial transcriptional regulator 132 246 1.3E-30 T 13-10-2018 IPR014757 Transcription regulator IclR, C-terminal RAM_29120 c610aff5da9465ef6c2668bfacb10eae 265 Pfam PF09339 IclR helix-turn-helix domain 14 63 6.3E-14 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RAM_29120 c610aff5da9465ef6c2668bfacb10eae 265 SUPERFAMILY SSF46785 14 79 9.85E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_29120 c610aff5da9465ef6c2668bfacb10eae 265 Gene3D G3DSA:3.30.450.40 87 259 1.7E-51 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_29120 c610aff5da9465ef6c2668bfacb10eae 265 SMART SM00346 12 100 2.4E-24 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RAM_29120 c610aff5da9465ef6c2668bfacb10eae 265 Gene3D G3DSA:1.10.10.10 5 79 7.9E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_29120 c610aff5da9465ef6c2668bfacb10eae 265 SUPERFAMILY SSF55781 68 249 4.27E-45 T 13-10-2018 RAM_01885 1103027844c2ee390f0ef7dc01426faf 126 Gene3D G3DSA:2.30.31.20 2 121 7.6E-29 T 13-10-2018 IPR038658 Sporulation-specific cell division protein SsgB superfamily RAM_01885 1103027844c2ee390f0ef7dc01426faf 126 Pfam PF04686 Streptomyces sporulation and cell division protein, SsgA 17 109 1.8E-23 T 13-10-2018 IPR006776 Sporulation-specific cell division protein SsgB GO:0051301 RAM_09200 668a2cfad146d422a77c3093b6f18d90 929 Pfam PF02347 Glycine cleavage system P-protein 450 704 1.9E-10 T 13-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 RAM_09200 668a2cfad146d422a77c3093b6f18d90 929 Pfam PF02347 Glycine cleavage system P-protein 1 412 4.2E-165 T 13-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 RAM_09200 668a2cfad146d422a77c3093b6f18d90 929 Gene3D G3DSA:3.40.640.10 67 328 1.6E-102 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_09200 668a2cfad146d422a77c3093b6f18d90 929 Gene3D G3DSA:3.40.640.10 495 714 2.2E-57 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_09200 668a2cfad146d422a77c3093b6f18d90 929 SUPERFAMILY SSF53383 450 923 2.28E-97 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_09200 668a2cfad146d422a77c3093b6f18d90 929 Hamap MF_00711 Glycine dehydrogenase (decarboxylating) [gcvP]. 1 927 24.009 T 13-10-2018 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 RAM_09200 668a2cfad146d422a77c3093b6f18d90 929 Gene3D G3DSA:3.90.1150.10 737 867 1.8E-39 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_09200 668a2cfad146d422a77c3093b6f18d90 929 TIGRFAM TIGR00461 gcvP: glycine dehydrogenase 1 921 0.0 T 13-10-2018 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 RAM_09200 668a2cfad146d422a77c3093b6f18d90 929 SUPERFAMILY SSF53383 1 413 6.35E-91 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_19445 e3492a433fda7d5b5022ca66869432e7 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 1.3E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19445 e3492a433fda7d5b5022ca66869432e7 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 1.3E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19445 e3492a433fda7d5b5022ca66869432e7 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 1.3E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19445 e3492a433fda7d5b5022ca66869432e7 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 1.3E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19445 e3492a433fda7d5b5022ca66869432e7 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 213 233 1.3E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19445 e3492a433fda7d5b5022ca66869432e7 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 1.3E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19445 e3492a433fda7d5b5022ca66869432e7 250 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 9 196 6.9E-5 T 13-10-2018 RAM_19445 e3492a433fda7d5b5022ca66869432e7 250 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 249 1.0E-48 T 13-10-2018 RAM_19445 e3492a433fda7d5b5022ca66869432e7 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 5.6E-6 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19445 e3492a433fda7d5b5022ca66869432e7 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 5.6E-6 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19445 e3492a433fda7d5b5022ca66869432e7 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 5.6E-6 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19445 e3492a433fda7d5b5022ca66869432e7 250 SUPERFAMILY SSF51735 4 249 5.75E-68 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_19445 e3492a433fda7d5b5022ca66869432e7 250 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_19445 e3492a433fda7d5b5022ca66869432e7 250 Gene3D G3DSA:3.40.50.720 1 250 1.3E-70 T 13-10-2018 RAM_28725 5217e83243c81bdf236aa0748044ef75 289 Gene3D G3DSA:1.10.1740.10 5 67 7.5E-6 T 13-10-2018 RAM_28725 5217e83243c81bdf236aa0748044ef75 289 SUPERFAMILY SSF54427 173 284 1.37E-7 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_28725 5217e83243c81bdf236aa0748044ef75 289 SUPERFAMILY SSF88659 78 157 7.29E-12 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_28725 5217e83243c81bdf236aa0748044ef75 289 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 8 156 1.0E-12 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_28725 5217e83243c81bdf236aa0748044ef75 289 Pfam PF08281 Sigma-70, region 4 104 156 8.3E-12 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_28725 5217e83243c81bdf236aa0748044ef75 289 Pfam PF04542 Sigma-70 region 2 9 68 5.7E-9 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_28725 5217e83243c81bdf236aa0748044ef75 289 Gene3D G3DSA:1.10.10.10 105 159 5.2E-12 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_28725 5217e83243c81bdf236aa0748044ef75 289 SUPERFAMILY SSF88946 6 65 5.1E-8 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_22030 66b69c7215e5927116ff6a81038b17ec 123 Gene3D G3DSA:3.90.56.10 18 112 4.0E-8 T 13-10-2018 IPR036889 Monooxygenase component MmoB/DmpM superfamily GO:0004497|GO:0006725 RAM_22030 66b69c7215e5927116ff6a81038b17ec 123 SUPERFAMILY SSF56029 13 118 1.12E-22 T 13-10-2018 IPR036889 Monooxygenase component MmoB/DmpM superfamily GO:0004497|GO:0006725 RAM_22030 66b69c7215e5927116ff6a81038b17ec 123 Pfam PF02406 MmoB/DmpM family 19 105 3.3E-24 T 13-10-2018 IPR003454 Monooxygenase component MmoB/DmpM GO:0004497|GO:0006725 RAM_42060 04a452086c59fdbcf26c15be299928c1 568 Gene3D G3DSA:3.40.50.200 125 564 1.4E-74 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RAM_42060 04a452086c59fdbcf26c15be299928c1 568 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 471 481 - T 13-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site RAM_42060 04a452086c59fdbcf26c15be299928c1 568 PRINTS PR00723 Subtilisin serine protease family (S8) signature 157 176 5.0E-20 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related RAM_42060 04a452086c59fdbcf26c15be299928c1 568 PRINTS PR00723 Subtilisin serine protease family (S8) signature 470 486 5.0E-20 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related RAM_42060 04a452086c59fdbcf26c15be299928c1 568 PRINTS PR00723 Subtilisin serine protease family (S8) signature 217 230 5.0E-20 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related RAM_42060 04a452086c59fdbcf26c15be299928c1 568 SUPERFAMILY SSF52743 141 562 3.4E-59 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RAM_42060 04a452086c59fdbcf26c15be299928c1 568 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 221 231 - T 13-10-2018 IPR022398 Peptidase S8, subtilisin, His-active site RAM_42060 04a452086c59fdbcf26c15be299928c1 568 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 162 173 - T 13-10-2018 IPR023827 Peptidase S8, subtilisin, Asp-active site RAM_42060 04a452086c59fdbcf26c15be299928c1 568 Pfam PF00082 Subtilase family 158 516 1.5E-41 T 13-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RAM_11540 95721e7cb5369ee8b6586ef239c8ae31 390 Gene3D G3DSA:1.10.540.10 1 131 7.3E-38 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_11540 95721e7cb5369ee8b6586ef239c8ae31 390 Gene3D G3DSA:2.40.110.10 133 232 8.5E-36 T 13-10-2018 RAM_11540 95721e7cb5369ee8b6586ef239c8ae31 390 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 134 224 1.3E-24 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RAM_11540 95721e7cb5369ee8b6586ef239c8ae31 390 Gene3D G3DSA:1.20.140.10 238 390 6.1E-35 T 13-10-2018 RAM_11540 95721e7cb5369ee8b6586ef239c8ae31 390 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 19 130 4.0E-29 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_11540 95721e7cb5369ee8b6586ef239c8ae31 390 SUPERFAMILY SSF56645 7 235 7.07E-74 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_11540 95721e7cb5369ee8b6586ef239c8ae31 390 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 236 383 7.0E-27 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_11540 95721e7cb5369ee8b6586ef239c8ae31 390 SUPERFAMILY SSF47203 240 386 3.06E-37 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_11540 95721e7cb5369ee8b6586ef239c8ae31 390 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 136 148 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RAM_27775 24f53439448b93be85a0581c889dbf9a 312 Gene3D G3DSA:3.40.50.720 8 294 1.7E-49 T 13-10-2018 RAM_27775 24f53439448b93be85a0581c889dbf9a 312 Pfam PF01370 NAD dependent epimerase/dehydratase family 11 225 1.1E-26 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 RAM_27775 24f53439448b93be85a0581c889dbf9a 312 SUPERFAMILY SSF51735 9 294 5.33E-51 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_32925 a83b37d3586d9218e3a20b32dcb2f64b 395 SUPERFAMILY SSF50494 153 375 7.45E-18 T 13-10-2018 IPR009003 Peptidase S1, PA clan RAM_32925 a83b37d3586d9218e3a20b32dcb2f64b 395 Gene3D G3DSA:2.40.10.10 183 274 1.4E-12 T 13-10-2018 RAM_32925 a83b37d3586d9218e3a20b32dcb2f64b 395 Gene3D G3DSA:2.40.10.10 275 345 1.4E-12 T 13-10-2018 RAM_32925 a83b37d3586d9218e3a20b32dcb2f64b 395 PRINTS PR00839 V8 serine protease family signature 185 202 4.1E-7 T 13-10-2018 IPR008256 Peptidase S1B GO:0006508|GO:0008236 RAM_32925 a83b37d3586d9218e3a20b32dcb2f64b 395 PRINTS PR00839 V8 serine protease family signature 316 332 4.1E-7 T 13-10-2018 IPR008256 Peptidase S1B GO:0006508|GO:0008236 RAM_32925 a83b37d3586d9218e3a20b32dcb2f64b 395 Pfam PF13365 Trypsin-like peptidase domain 185 340 6.7E-15 T 13-10-2018 RAM_43290 d04d2b22adc0cd0fc11f973565ce1fdc 405 SUPERFAMILY SSF51338 4 387 5.19E-21 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_43290 d04d2b22adc0cd0fc11f973565ce1fdc 405 Pfam PF01979 Amidohydrolase family 224 372 7.1E-14 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RAM_43290 d04d2b22adc0cd0fc11f973565ce1fdc 405 Gene3D G3DSA:3.20.20.140 58 347 1.5E-124 T 13-10-2018 RAM_43290 d04d2b22adc0cd0fc11f973565ce1fdc 405 Gene3D G3DSA:2.30.40.10 8 381 1.5E-124 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_43290 d04d2b22adc0cd0fc11f973565ce1fdc 405 SUPERFAMILY SSF51556 57 351 2.86E-46 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_30445 6a07c396f0bd3973b167d7e276693732 183 SUPERFAMILY SSF54909 1 88 1.64E-13 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_30445 6a07c396f0bd3973b167d7e276693732 183 Gene3D G3DSA:3.30.70.1060 1 93 2.3E-19 T 13-10-2018 RAM_30445 6a07c396f0bd3973b167d7e276693732 183 Pfam PF03795 YCII-related domain 1 87 7.7E-14 T 13-10-2018 IPR005545 YCII-related RAM_40265 af50ee5fec9950f182eb6bd52eb53454 110 SMART SM00422 25 93 2.9E-9 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_40265 af50ee5fec9950f182eb6bd52eb53454 110 SUPERFAMILY SSF46955 25 100 7.33E-13 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily RAM_40265 af50ee5fec9950f182eb6bd52eb53454 110 Gene3D G3DSA:1.10.1660.10 20 92 1.4E-14 T 13-10-2018 RAM_40265 af50ee5fec9950f182eb6bd52eb53454 110 Pfam PF13411 MerR HTH family regulatory protein 25 89 3.0E-11 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_36460 83625e0b7df5f41ba46db1726f107902 150 Pfam PF01638 HxlR-like helix-turn-helix 74 128 1.4E-5 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type RAM_36460 83625e0b7df5f41ba46db1726f107902 150 SUPERFAMILY SSF46785 20 138 7.85E-14 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_36460 83625e0b7df5f41ba46db1726f107902 150 Gene3D G3DSA:1.10.10.10 3 143 5.1E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_03000 9b1da3b4021fab021f17f2d023a19caa 49 Pfam PF00471 Ribosomal protein L33 4 49 1.5E-22 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_03000 9b1da3b4021fab021f17f2d023a19caa 49 Gene3D G3DSA:2.20.28.120 1 49 1.1E-22 T 13-10-2018 IPR038584 Ribosomal protein L33 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_03000 9b1da3b4021fab021f17f2d023a19caa 49 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 3 49 2.9E-19 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_03000 9b1da3b4021fab021f17f2d023a19caa 49 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 1 49 19.517 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_03000 9b1da3b4021fab021f17f2d023a19caa 49 SUPERFAMILY SSF57829 2 49 8.55E-19 T 13-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 RAM_03000 9b1da3b4021fab021f17f2d023a19caa 49 ProSitePatterns PS00582 Ribosomal protein L33 signature. 17 36 - T 13-10-2018 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_39475 8a57de70ef8a4929f6e60e9e305a359f 299 Gene3D G3DSA:3.40.50.720 4 280 1.4E-62 T 13-10-2018 RAM_39475 8a57de70ef8a4929f6e60e9e305a359f 299 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_39475 8a57de70ef8a4929f6e60e9e305a359f 299 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 2.4E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_39475 8a57de70ef8a4929f6e60e9e305a359f 299 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 2.4E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_39475 8a57de70ef8a4929f6e60e9e305a359f 299 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 2.4E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_39475 8a57de70ef8a4929f6e60e9e305a359f 299 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 2.4E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_39475 8a57de70ef8a4929f6e60e9e305a359f 299 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 202 222 2.4E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_39475 8a57de70ef8a4929f6e60e9e305a359f 299 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 2.4E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_39475 8a57de70ef8a4929f6e60e9e305a359f 299 Pfam PF00106 short chain dehydrogenase 8 193 2.0E-42 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_39475 8a57de70ef8a4929f6e60e9e305a359f 299 SUPERFAMILY SSF51735 5 257 5.37E-57 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_39475 8a57de70ef8a4929f6e60e9e305a359f 299 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 3.8E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_39475 8a57de70ef8a4929f6e60e9e305a359f 299 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 3.8E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_39475 8a57de70ef8a4929f6e60e9e305a359f 299 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 3.8E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_37075 29576cddddb9b10d305ac6926b7a0843 132 Pfam PF13577 SnoaL-like domain 13 126 6.1E-18 T 13-10-2018 IPR037401 SnoaL-like domain RAM_37075 29576cddddb9b10d305ac6926b7a0843 132 SUPERFAMILY SSF54427 10 131 2.99E-26 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_37075 29576cddddb9b10d305ac6926b7a0843 132 Gene3D G3DSA:3.10.450.50 10 131 3.9E-26 T 13-10-2018 RAM_07440 252f30712f230dc211f5404606efb19d 201 SUPERFAMILY SSF52172 7 130 2.99E-24 T 13-10-2018 IPR011006 CheY-like superfamily RAM_07440 252f30712f230dc211f5404606efb19d 201 Gene3D G3DSA:3.40.50.12740 7 201 5.1E-46 T 13-10-2018 RAM_07440 252f30712f230dc211f5404606efb19d 201 SMART SM00448 7 120 6.5E-15 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_07440 252f30712f230dc211f5404606efb19d 201 SUPERFAMILY SSF46894 133 200 4.42E-19 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_07440 252f30712f230dc211f5404606efb19d 201 Pfam PF00072 Response regulator receiver domain 9 120 1.1E-16 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_07440 252f30712f230dc211f5404606efb19d 201 SMART SM00421 138 195 4.1E-19 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_07440 252f30712f230dc211f5404606efb19d 201 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 171 183 6.7E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_07440 252f30712f230dc211f5404606efb19d 201 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 155 171 6.7E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_07440 252f30712f230dc211f5404606efb19d 201 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 141 155 6.7E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_07440 252f30712f230dc211f5404606efb19d 201 Pfam PF00196 Bacterial regulatory proteins, luxR family 141 193 8.1E-17 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_27555 50b000d3186266c6b05511a90f260bae 277 PIRSF PIRSF006648 16 274 3.8E-30 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 RAM_27555 50b000d3186266c6b05511a90f260bae 277 Pfam PF01061 ABC-2 type transporter 28 232 9.1E-27 T 13-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 RAM_21440 eb215bc377264685a2825e457421eb48 297 Gene3D G3DSA:3.40.50.1220 32 278 8.5E-74 T 13-10-2018 RAM_21440 eb215bc377264685a2825e457421eb48 297 SUPERFAMILY SSF52467 31 286 1.31E-70 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily RAM_21440 eb215bc377264685a2825e457421eb48 297 Hamap MF_01967 NAD-dependent protein deacetylase [cobB]. 16 285 60.544 T 13-10-2018 IPR026587 Sirtuin, class II Reactome: R-HSA-2151201 RAM_21440 eb215bc377264685a2825e457421eb48 297 Gene3D G3DSA:3.30.1600.10 48 210 8.5E-74 T 13-10-2018 IPR026591 Sirtuin, catalytic core small domain superfamily RAM_21440 eb215bc377264685a2825e457421eb48 297 Pfam PF02146 Sir2 family 39 240 2.0E-42 T 13-10-2018 IPR003000 Sirtuin family GO:0070403 RAM_27520 bce89fc9f57e6c0e06dc0724fef8c790 389 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 281 357 1.6E-9 T 13-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 RAM_27520 bce89fc9f57e6c0e06dc0724fef8c790 389 Gene3D G3DSA:3.40.50.11450 2 384 3.6E-119 T 13-10-2018 RAM_27520 bce89fc9f57e6c0e06dc0724fef8c790 389 Gene3D G3DSA:3.40.50.2000 201 371 3.6E-119 T 13-10-2018 RAM_27520 bce89fc9f57e6c0e06dc0724fef8c790 389 Pfam PF06722 Protein of unknown function (DUF1205) 179 273 6.2E-24 T 13-10-2018 IPR010610 Domain of unknown function DUF1205 RAM_27520 bce89fc9f57e6c0e06dc0724fef8c790 389 SUPERFAMILY SSF53756 2 384 1.06E-74 T 13-10-2018 RAM_30345 aeb100b6a6e46decda198c28620d9dd7 453 Pfam PF00171 Aldehyde dehydrogenase family 3 449 8.2E-132 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RAM_30345 aeb100b6a6e46decda198c28620d9dd7 453 SUPERFAMILY SSF53720 2 451 3.01E-138 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RAM_30345 aeb100b6a6e46decda198c28620d9dd7 453 Gene3D G3DSA:3.40.309.10 233 423 4.0E-145 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RAM_30345 aeb100b6a6e46decda198c28620d9dd7 453 Gene3D G3DSA:3.40.605.10 2 446 4.0E-145 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RAM_09035 7e7f4ae3badf3a2ff87e9c4850065e30 283 Pfam PF02405 Permease MlaE 66 270 2.5E-58 T 13-10-2018 IPR030802 ABC transporter permease MalE GO:0043190 RAM_09345 9b2aca0bed7840f2d752e64ab12267e6 322 SUPERFAMILY SSF51430 3 308 4.98E-62 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_09345 9b2aca0bed7840f2d752e64ab12267e6 322 Pfam PF00248 Aldo/keto reductase family 7 300 1.6E-44 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain RAM_09345 9b2aca0bed7840f2d752e64ab12267e6 322 Gene3D G3DSA:3.20.20.100 1 308 8.5E-68 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_23165 d09eeb1d22ade325bd806dd83039726c 356 Pfam PF07730 Histidine kinase 178 244 7.2E-18 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_23165 d09eeb1d22ade325bd806dd83039726c 356 Gene3D G3DSA:3.30.565.10 248 356 8.3E-18 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_31095 c09cf2ea15547bddb5f4b29581ccf9a7 462 PIRSF PIRSF002746 7 462 2.6E-149 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 RAM_31095 c09cf2ea15547bddb5f4b29581ccf9a7 462 Pfam PF02447 GntP family permease 13 459 6.3E-130 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 RAM_31095 c09cf2ea15547bddb5f4b29581ccf9a7 462 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 14 461 8.9E-116 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 RAM_07045 1c3c0fd047f42fd79fe86cadf1f2f37b 846 Pfam PF02687 FtsX-like permease family 749 834 1.7E-6 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 RAM_07045 1c3c0fd047f42fd79fe86cadf1f2f37b 846 Pfam PF02687 FtsX-like permease family 294 388 2.2E-10 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 RAM_32575 2bc2a9f7543bf1b2c446d7b18239dd12 134 Gene3D G3DSA:3.30.530.20 1 134 9.5E-22 T 13-10-2018 IPR023393 START-like domain superfamily RAM_32575 2bc2a9f7543bf1b2c446d7b18239dd12 134 SUPERFAMILY SSF55961 3 129 4.36E-20 T 13-10-2018 RAM_32575 2bc2a9f7543bf1b2c446d7b18239dd12 134 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 4 131 3.1E-20 T 13-10-2018 IPR019587 Polyketide cyclase/dehydrase RAM_00420 c8b97ad83b5d7279a0dbd48d37d1b03d 394 Gene3D G3DSA:3.20.20.10 24 265 8.2E-53 T 13-10-2018 IPR029066 PLP-binding barrel RAM_00420 c8b97ad83b5d7279a0dbd48d37d1b03d 394 SUPERFAMILY SSF51419 22 270 4.58E-23 T 13-10-2018 IPR029066 PLP-binding barrel RAM_00420 c8b97ad83b5d7279a0dbd48d37d1b03d 394 Pfam PF01168 Alanine racemase, N-terminal domain 21 267 3.4E-16 T 13-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RAM_35060 c534bda9851c9a9960e94970ac43d6fc 387 SUPERFAMILY SSF55874 271 380 1.7E-11 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_35060 c534bda9851c9a9960e94970ac43d6fc 387 Gene3D G3DSA:3.30.565.10 256 381 1.4E-21 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_35060 c534bda9851c9a9960e94970ac43d6fc 387 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 292 381 2.2E-5 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_01135 3d31b0d407239d630b833e204fd30bbe 407 Pfam PF13450 NAD(P)-binding Rossmann-like domain 22 91 7.9E-18 T 13-10-2018 RAM_01135 3d31b0d407239d630b833e204fd30bbe 407 Gene3D G3DSA:3.40.50.720 172 281 5.1E-25 T 13-10-2018 RAM_01135 3d31b0d407239d630b833e204fd30bbe 407 SUPERFAMILY SSF51971 18 388 2.18E-44 T 13-10-2018 RAM_01135 3d31b0d407239d630b833e204fd30bbe 407 Gene3D G3DSA:3.40.50.720 15 109 2.8E-33 T 13-10-2018 RAM_01135 3d31b0d407239d630b833e204fd30bbe 407 Gene3D G3DSA:3.40.50.720 288 400 1.4E-19 T 13-10-2018 RAM_01135 3d31b0d407239d630b833e204fd30bbe 407 SUPERFAMILY SSF54373 267 337 1.53E-22 T 13-10-2018 RAM_01135 3d31b0d407239d630b833e204fd30bbe 407 TIGRFAM TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase 18 391 7.3E-105 T 13-10-2018 IPR004379 UDP-galactopyranose mutase GO:0008767 KEGG: 00052+5.4.99.9|KEGG: 00520+5.4.99.9|MetaCyc: PWY-6397|MetaCyc: PWY-7328|MetaCyc: PWY-7622 RAM_01135 3d31b0d407239d630b833e204fd30bbe 407 Pfam PF03275 UDP-galactopyranose mutase 166 373 2.6E-79 T 13-10-2018 IPR015899 UDP-galactopyranose mutase, C-terminal GO:0008767 KEGG: 00052+5.4.99.9|KEGG: 00520+5.4.99.9|MetaCyc: PWY-6397|MetaCyc: PWY-7328|MetaCyc: PWY-7622 RAM_02985 c6de2e8297ce576232af5944960561af 283 PIRSF PIRSF017393 1 282 1.4E-80 T 13-10-2018 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type RAM_02985 c6de2e8297ce576232af5944960561af 283 SUPERFAMILY SSF53335 19 267 2.11E-44 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_02985 c6de2e8297ce576232af5944960561af 283 Pfam PF04672 S-adenosyl methyltransferase 12 281 5.2E-76 T 13-10-2018 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type RAM_02985 c6de2e8297ce576232af5944960561af 283 Gene3D G3DSA:3.40.50.150 1 282 2.0E-93 T 13-10-2018 RAM_37880 810519d8ae605f818e0f21b01a35a278 409 Gene3D G3DSA:1.10.540.10 22 134 6.1E-27 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_37880 810519d8ae605f818e0f21b01a35a278 409 Gene3D G3DSA:2.40.110.10 135 229 2.8E-28 T 13-10-2018 RAM_37880 810519d8ae605f818e0f21b01a35a278 409 Gene3D G3DSA:1.20.140.10 244 407 1.8E-27 T 13-10-2018 RAM_37880 810519d8ae605f818e0f21b01a35a278 409 SUPERFAMILY SSF56645 24 228 1.22E-33 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_37880 810519d8ae605f818e0f21b01a35a278 409 SUPERFAMILY SSF47203 257 403 3.62E-8 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_37880 810519d8ae605f818e0f21b01a35a278 409 PIRSF PIRSF016578 18 406 8.1E-92 T 13-10-2018 RAM_37880 810519d8ae605f818e0f21b01a35a278 409 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 256 389 3.1E-16 T 13-10-2018 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain RAM_37880 810519d8ae605f818e0f21b01a35a278 409 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 35 109 1.3E-5 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_25185 0d0eafc3750aa932e6ed3765db856380 155 Gene3D G3DSA:3.40.1280.10 1 153 9.1E-56 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RAM_25185 0d0eafc3750aa932e6ed3765db856380 155 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 2 151 31.625 T 13-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 RAM_25185 0d0eafc3750aa932e6ed3765db856380 155 PIRSF PIRSF029256 1 153 1.1E-58 T 13-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 RAM_25185 0d0eafc3750aa932e6ed3765db856380 155 Pfam PF00588 SpoU rRNA Methylase family 3 142 1.2E-27 T 13-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 RAM_25185 0d0eafc3750aa932e6ed3765db856380 155 SUPERFAMILY SSF75217 2 150 4.51E-40 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases RAM_29605 0e857d4299d356e521239cc31bc4023b 355 SUPERFAMILY SSF56349 47 327 3.53E-32 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RAM_29605 0e857d4299d356e521239cc31bc4023b 355 Gene3D G3DSA:1.10.150.130 42 149 1.4E-7 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal RAM_29605 0e857d4299d356e521239cc31bc4023b 355 Gene3D G3DSA:1.10.443.10 156 342 9.4E-19 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 RAM_29605 0e857d4299d356e521239cc31bc4023b 355 Pfam PF00589 Phage integrase family 156 316 7.2E-10 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RAM_30070 aa832ef4f3aa436d9fd224b159643996 213 Pfam PF02525 Flavodoxin-like fold 3 167 7.4E-30 T 13-10-2018 IPR003680 Flavodoxin-like fold RAM_30070 aa832ef4f3aa436d9fd224b159643996 213 SUPERFAMILY SSF52218 1 167 2.1E-34 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RAM_30070 aa832ef4f3aa436d9fd224b159643996 213 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 2 208 24.916 T 13-10-2018 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 RAM_30070 aa832ef4f3aa436d9fd224b159643996 213 Gene3D G3DSA:3.40.50.360 1 199 2.9E-42 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RAM_14640 02d382b8bb1d6fe1e18960214bed398e 194 Pfam PF06314 Acetoacetate decarboxylase (ADC) 8 125 1.2E-13 T 13-10-2018 IPR010451 Acetoacetate decarboxylase GO:0016829 KEGG: 00072+4.1.1.4|KEGG: 00640+4.1.1.4|MetaCyc: PWY-5451|MetaCyc: PWY-6588|MetaCyc: PWY-6876|MetaCyc: PWY-7466 RAM_14640 02d382b8bb1d6fe1e18960214bed398e 194 SUPERFAMILY SSF160104 3 148 5.1E-19 T 13-10-2018 IPR023375 Acetoacetate decarboxylase domain superfamily KEGG: 00072+4.1.1.4|KEGG: 00640+4.1.1.4|MetaCyc: PWY-5451|MetaCyc: PWY-6588|MetaCyc: PWY-6876|MetaCyc: PWY-7466 RAM_14640 02d382b8bb1d6fe1e18960214bed398e 194 Gene3D G3DSA:2.40.400.10 1 158 6.7E-17 T 13-10-2018 IPR023375 Acetoacetate decarboxylase domain superfamily KEGG: 00072+4.1.1.4|KEGG: 00640+4.1.1.4|MetaCyc: PWY-5451|MetaCyc: PWY-6588|MetaCyc: PWY-6876|MetaCyc: PWY-7466 RAM_18610 4820beb0532bd612617d7074c8c2774c 117 Gene3D G3DSA:3.10.450.50 3 117 7.1E-19 T 13-10-2018 RAM_18610 4820beb0532bd612617d7074c8c2774c 117 Pfam PF13474 SnoaL-like domain 8 115 5.9E-8 T 13-10-2018 IPR037401 SnoaL-like domain RAM_18610 4820beb0532bd612617d7074c8c2774c 117 TIGRFAM TIGR02246 TIGR02246: conserved hypothetical protein 8 113 8.0E-13 T 13-10-2018 IPR011944 Steroid delta5-4-isomerase KEGG: 00140+5.3.3.1|KEGG: 00984+5.3.3.1|MetaCyc: PWY-2582|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-699|MetaCyc: PWY-7299 RAM_18610 4820beb0532bd612617d7074c8c2774c 117 SUPERFAMILY SSF54427 8 116 2.24E-20 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_06425 700d64da8a5005b3d7d90d1b57d86ff8 550 Pfam PF01175 Urocanase Rossmann-like domain 134 341 2.8E-85 T 13-10-2018 IPR035085 Urocanase, Rossmann-like domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RAM_06425 700d64da8a5005b3d7d90d1b57d86ff8 550 ProSitePatterns PS01233 Urocanase signature. 434 449 - T 13-10-2018 IPR023636 Urocanase conserved site GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RAM_06425 700d64da8a5005b3d7d90d1b57d86ff8 550 Hamap MF_00577 Urocanate hydratase [hutU]. 1 548 50.303 T 13-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RAM_06425 700d64da8a5005b3d7d90d1b57d86ff8 550 Pfam PF17392 Urocanase C-terminal domain 344 538 2.5E-92 T 13-10-2018 IPR035401 Urocanase, C-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RAM_06425 700d64da8a5005b3d7d90d1b57d86ff8 550 Pfam PF17391 Urocanase N-terminal domain 5 131 2.3E-59 T 13-10-2018 IPR035400 Urocanase, N-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RAM_06425 700d64da8a5005b3d7d90d1b57d86ff8 550 Gene3D G3DSA:3.40.1770.10 13 534 2.4E-248 T 13-10-2018 RAM_06425 700d64da8a5005b3d7d90d1b57d86ff8 550 TIGRFAM TIGR01228 hutU: urocanate hydratase 4 546 2.2E-279 T 13-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RAM_06425 700d64da8a5005b3d7d90d1b57d86ff8 550 SUPERFAMILY SSF111326 2 547 1.44E-249 T 13-10-2018 IPR036190 Urocanase superfamily KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RAM_06425 700d64da8a5005b3d7d90d1b57d86ff8 550 PIRSF PIRSF001423 1 550 9.4E-280 T 13-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RAM_06425 700d64da8a5005b3d7d90d1b57d86ff8 550 Gene3D G3DSA:3.40.50.10730 135 341 2.4E-248 T 13-10-2018 IPR038364 Urocanase, central domain superfamily KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RAM_44855 dcce4911a50f421637831e3cb4eb8df8 153 Pfam PF11377 Protein of unknown function (DUF3180) 9 140 1.8E-36 T 13-10-2018 IPR021517 Protein of unknown function DUF3180 RAM_42675 6cd9ce71a84547cc22554d42810ce42f 222 Pfam PF13302 Acetyltransferase (GNAT) domain 33 176 8.2E-15 T 13-10-2018 IPR000182 GNAT domain RAM_42675 6cd9ce71a84547cc22554d42810ce42f 222 SUPERFAMILY SSF55729 31 201 8.58E-38 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_42675 6cd9ce71a84547cc22554d42810ce42f 222 Gene3D G3DSA:3.40.630.30 29 206 1.9E-38 T 13-10-2018 RAM_30460 905e05a57757cc8cf29fbd2a04281acd 376 Pfam PF10531 SLBB domain 210 251 8.8E-11 T 13-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_30460 905e05a57757cc8cf29fbd2a04281acd 376 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 284 363 4.6E-13 T 13-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_30460 905e05a57757cc8cf29fbd2a04281acd 376 Gene3D G3DSA:3.40.50.11540 44 203 2.5E-44 T 13-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_30460 905e05a57757cc8cf29fbd2a04281acd 376 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 39 193 3.6E-34 T 13-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_30460 905e05a57757cc8cf29fbd2a04281acd 376 SUPERFAMILY SSF140490 279 371 6.41E-13 T 13-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_30460 905e05a57757cc8cf29fbd2a04281acd 376 SUPERFAMILY SSF142984 210 258 5.75E-8 T 13-10-2018 RAM_30460 905e05a57757cc8cf29fbd2a04281acd 376 Gene3D G3DSA:3.10.20.600 204 266 8.6E-9 T 13-10-2018 RAM_30460 905e05a57757cc8cf29fbd2a04281acd 376 SUPERFAMILY SSF142019 9 206 8.76E-43 T 13-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_08215 2b4a4dcbabf7deb159b29462922af7b3 243 Gene3D G3DSA:1.10.10.10 1 43 8.1E-6 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_08215 2b4a4dcbabf7deb159b29462922af7b3 243 SUPERFAMILY SSF53850 51 242 7.6E-23 T 13-10-2018 RAM_08215 2b4a4dcbabf7deb159b29462922af7b3 243 Pfam PF03466 LysR substrate binding domain 52 235 3.3E-20 T 13-10-2018 IPR005119 LysR, substrate-binding RAM_08215 2b4a4dcbabf7deb159b29462922af7b3 243 Gene3D G3DSA:3.40.190.10 44 133 2.3E-5 T 13-10-2018 RAM_08215 2b4a4dcbabf7deb159b29462922af7b3 243 Gene3D G3DSA:3.40.190.10 134 208 2.4E-6 T 13-10-2018 RAM_45840 3e9d4bd3bf54cd8a2f54bd8ee8f854d6 223 Gene3D G3DSA:1.10.357.10 1 222 1.9E-71 T 13-10-2018 RAM_45840 3e9d4bd3bf54cd8a2f54bd8ee8f854d6 223 SUPERFAMILY SSF48498 89 216 6.0E-24 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_45840 3e9d4bd3bf54cd8a2f54bd8ee8f854d6 223 Pfam PF00440 Bacterial regulatory proteins, tetR family 21 62 2.0E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_45840 3e9d4bd3bf54cd8a2f54bd8ee8f854d6 223 SUPERFAMILY SSF46689 8 79 9.64E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_18150 3b2af93af06e3763fd32c9822162134c 420 Gene3D G3DSA:3.40.50.1820 221 417 1.8E-6 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_18150 3b2af93af06e3763fd32c9822162134c 420 SUPERFAMILY SSF53474 234 379 1.29E-6 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_28750 50caa0658d0d22dfdfb002d10d131c8d 341 Gene3D G3DSA:1.10.630.10 1 341 8.4E-115 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_28750 50caa0658d0d22dfdfb002d10d131c8d 341 PRINTS PR00385 P450 superfamily signature 181 198 1.3E-7 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_28750 50caa0658d0d22dfdfb002d10d131c8d 341 PRINTS PR00385 P450 superfamily signature 293 304 1.3E-7 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_28750 50caa0658d0d22dfdfb002d10d131c8d 341 PRINTS PR00385 P450 superfamily signature 216 227 1.3E-7 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_28750 50caa0658d0d22dfdfb002d10d131c8d 341 PRINTS PR00385 P450 superfamily signature 284 293 1.3E-7 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_28750 50caa0658d0d22dfdfb002d10d131c8d 341 Pfam PF00067 Cytochrome P450 122 310 8.3E-22 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_28750 50caa0658d0d22dfdfb002d10d131c8d 341 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 286 295 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RAM_28750 50caa0658d0d22dfdfb002d10d131c8d 341 PRINTS PR00359 B-class P450 signature 235 262 1.1E-59 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_28750 50caa0658d0d22dfdfb002d10d131c8d 341 PRINTS PR00359 B-class P450 signature 293 304 1.1E-59 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_28750 50caa0658d0d22dfdfb002d10d131c8d 341 PRINTS PR00359 B-class P450 signature 263 278 1.1E-59 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_28750 50caa0658d0d22dfdfb002d10d131c8d 341 PRINTS PR00359 B-class P450 signature 216 227 1.1E-59 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_28750 50caa0658d0d22dfdfb002d10d131c8d 341 PRINTS PR00359 B-class P450 signature 97 112 1.1E-59 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_28750 50caa0658d0d22dfdfb002d10d131c8d 341 PRINTS PR00359 B-class P450 signature 33 44 1.1E-59 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_28750 50caa0658d0d22dfdfb002d10d131c8d 341 PRINTS PR00359 B-class P450 signature 80 96 1.1E-59 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_28750 50caa0658d0d22dfdfb002d10d131c8d 341 PRINTS PR00359 B-class P450 signature 135 157 1.1E-59 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_28750 50caa0658d0d22dfdfb002d10d131c8d 341 PRINTS PR00359 B-class P450 signature 284 293 1.1E-59 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_28750 50caa0658d0d22dfdfb002d10d131c8d 341 SUPERFAMILY SSF48264 15 341 8.77E-87 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_34850 75c93f6ace93101329c7af4f0e71f4ed 387 Pfam PF13560 Helix-turn-helix domain 2 56 9.9E-11 T 13-10-2018 RAM_34850 75c93f6ace93101329c7af4f0e71f4ed 387 Gene3D G3DSA:1.25.40.10 87 384 3.0E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_34850 75c93f6ace93101329c7af4f0e71f4ed 387 SMART SM00530 2 55 2.8E-5 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_34850 75c93f6ace93101329c7af4f0e71f4ed 387 SUPERFAMILY SSF47413 1 59 1.27E-10 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_34850 75c93f6ace93101329c7af4f0e71f4ed 387 Gene3D G3DSA:1.10.260.40 1 59 2.9E-10 T 13-10-2018 RAM_47635 da24d68523491fd1bee4400faa5cc235 348 Gene3D G3DSA:3.30.360.10 125 338 3.8E-112 T 13-10-2018 RAM_47635 da24d68523491fd1bee4400faa5cc235 348 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 122 1.7E-18 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 RAM_47635 da24d68523491fd1bee4400faa5cc235 348 SUPERFAMILY SSF55347 131 286 1.96E-30 T 13-10-2018 RAM_47635 da24d68523491fd1bee4400faa5cc235 348 Gene3D G3DSA:3.40.50.720 6 318 3.8E-112 T 13-10-2018 RAM_47635 da24d68523491fd1bee4400faa5cc235 348 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 136 236 3.7E-12 T 13-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 RAM_47635 da24d68523491fd1bee4400faa5cc235 348 SUPERFAMILY SSF51735 3 159 2.58E-40 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_06280 b502533da01a68f5bd0ea515930ae544 288 SUPERFAMILY SSF53335 32 248 2.03E-25 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_06280 b502533da01a68f5bd0ea515930ae544 288 Pfam PF08241 Methyltransferase domain 47 150 8.7E-13 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 RAM_06280 b502533da01a68f5bd0ea515930ae544 288 Gene3D G3DSA:3.40.50.150 6 258 2.8E-25 T 13-10-2018 RAM_11675 c07b00826c81c1b666412796964e6d26 269 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 2 257 33.381 T 13-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 RAM_11675 c07b00826c81c1b666412796964e6d26 269 SUPERFAMILY SSF51366 12 257 3.86E-78 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 RAM_11675 c07b00826c81c1b666412796964e6d26 269 Hamap MF_00134_A Indole-3-glycerol phosphate synthase [trpC]. 33 253 29.315 T 13-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 RAM_11675 c07b00826c81c1b666412796964e6d26 269 Gene3D G3DSA:3.20.20.70 1 269 2.2E-109 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_11675 c07b00826c81c1b666412796964e6d26 269 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 51 68 - T 13-10-2018 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48 RAM_11675 c07b00826c81c1b666412796964e6d26 269 Pfam PF00218 Indole-3-glycerol phosphate synthase 4 252 4.2E-79 T 13-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 RAM_29430 e51bbc2e72045df35ef5c199609ab8df 162 Gene3D G3DSA:3.90.1170.50 2 65 3.8E-11 T 13-10-2018 RAM_29430 e51bbc2e72045df35ef5c199609ab8df 162 SUPERFAMILY SSF54665 4 62 1.19E-13 T 13-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily RAM_47115 dd5cc4b286e7b172cf1d9723d0a5ffaa 125 Gene3D G3DSA:2.30.110.10 18 117 7.2E-12 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_47115 dd5cc4b286e7b172cf1d9723d0a5ffaa 125 TIGRFAM TIGR00026 hi_GC_TIGR00026: deazaflavin-dependent oxidoreductase, nitroreductase family 21 103 1.7E-17 T 13-10-2018 IPR004378 F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 RAM_47115 dd5cc4b286e7b172cf1d9723d0a5ffaa 125 Pfam PF04075 F420H(2)-dependent quinone reductase 17 107 1.2E-6 T 13-10-2018 IPR004378 F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 RAM_07295 5e5b13d6d8f5053d78c2ce6865a0248a 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 6.9E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_07295 5e5b13d6d8f5053d78c2ce6865a0248a 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 6.9E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_07295 5e5b13d6d8f5053d78c2ce6865a0248a 190 SUPERFAMILY SSF46689 3 79 5.99E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_07295 5e5b13d6d8f5053d78c2ce6865a0248a 190 Gene3D G3DSA:1.10.357.10 1 189 3.7E-42 T 13-10-2018 RAM_07295 5e5b13d6d8f5053d78c2ce6865a0248a 190 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 55 2.2E-14 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_29745 54fa126f231a42247b840cea42a1fd94 277 SUPERFAMILY SSF53098 141 209 9.1E-9 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily RAM_29745 54fa126f231a42247b840cea42a1fd94 277 Pfam PF13546 DDE superfamily endonuclease 1 65 2.3E-9 T 13-10-2018 IPR038721 Transposase IS701-like, DDE domain RAM_22435 38e5454b187519bf2a91bb817defac12 368 Pfam PF13407 Periplasmic binding protein domain 45 321 1.4E-68 T 13-10-2018 IPR025997 Periplasmic binding protein RAM_22435 38e5454b187519bf2a91bb817defac12 368 SUPERFAMILY SSF53822 44 354 3.64E-70 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_22435 38e5454b187519bf2a91bb817defac12 368 Gene3D G3DSA:3.40.50.2300 147 363 1.8E-134 T 13-10-2018 RAM_22435 38e5454b187519bf2a91bb817defac12 368 Gene3D G3DSA:3.40.50.2300 45 342 1.8E-134 T 13-10-2018 RAM_25960 572763ef8252aeec509c3d4cb8bb2124 353 Gene3D G3DSA:3.40.50.2300 147 281 7.1E-59 T 13-10-2018 RAM_25960 572763ef8252aeec509c3d4cb8bb2124 353 Pfam PF13407 Periplasmic binding protein domain 44 292 1.2E-44 T 13-10-2018 IPR025997 Periplasmic binding protein RAM_25960 572763ef8252aeec509c3d4cb8bb2124 353 Gene3D G3DSA:3.40.50.2300 47 289 7.1E-59 T 13-10-2018 RAM_25960 572763ef8252aeec509c3d4cb8bb2124 353 SUPERFAMILY SSF53822 43 320 1.06E-48 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_13120 e3d8bd91672ad99286f8972b9ba00d28 379 SUPERFAMILY SSF53822 50 318 1.44E-56 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_13120 e3d8bd91672ad99286f8972b9ba00d28 379 Gene3D G3DSA:3.40.50.2300 155 352 6.6E-90 T 13-10-2018 RAM_13120 e3d8bd91672ad99286f8972b9ba00d28 379 Pfam PF13407 Periplasmic binding protein domain 55 315 2.0E-55 T 13-10-2018 IPR025997 Periplasmic binding protein RAM_13120 e3d8bd91672ad99286f8972b9ba00d28 379 Gene3D G3DSA:3.40.50.2300 53 340 6.6E-90 T 13-10-2018 RAM_10735 7065a5c533b452d48454211937413999 403 SUPERFAMILY SSF51395 33 399 6.28E-95 T 13-10-2018 RAM_10735 7065a5c533b452d48454211937413999 403 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 298 304 - T 13-10-2018 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 Reactome: R-HSA-9033241 RAM_10735 7065a5c533b452d48454211937413999 403 Gene3D G3DSA:3.20.20.70 33 403 7.2E-127 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_10735 7065a5c533b452d48454211937413999 403 Pfam PF01070 FMN-dependent dehydrogenase 43 400 9.5E-126 T 13-10-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 Reactome: R-HSA-9033241 RAM_10735 7065a5c533b452d48454211937413999 403 PIRSF PIRSF000138 19 403 7.4E-125 T 13-10-2018 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 Reactome: R-HSA-9033241 RAM_09270 56bcf6fe4befb7f4a54b76994227637f 182 Pfam PF01494 FAD binding domain 88 142 3.6E-7 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_09270 56bcf6fe4befb7f4a54b76994227637f 182 SUPERFAMILY SSF51905 77 156 1.77E-14 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_09270 56bcf6fe4befb7f4a54b76994227637f 182 Gene3D G3DSA:3.50.50.60 1 157 3.5E-34 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_24710 63fc7b20d7402a10ebe9c518dd4257f9 286 Pfam PF00775 Dioxygenase 101 284 2.6E-43 T 13-10-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 RAM_24710 63fc7b20d7402a10ebe9c518dd4257f9 286 Gene3D G3DSA:2.60.130.10 1 286 8.0E-101 T 13-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 RAM_24710 63fc7b20d7402a10ebe9c518dd4257f9 286 Pfam PF04444 Catechol dioxygenase N terminus 22 96 1.8E-27 T 13-10-2018 IPR007535 Catechol dioxygenase, N-terminal GO:0005506|GO:0009712|GO:0018576|GO:0055114 RAM_24710 63fc7b20d7402a10ebe9c518dd4257f9 286 SUPERFAMILY SSF49482 1 285 1.24E-81 T 13-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 RAM_24710 63fc7b20d7402a10ebe9c518dd4257f9 286 ProSitePatterns PS00083 Intradiol ring-cleavage dioxygenases signature. 129 157 - T 13-10-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 RAM_46635 4aa3aeff7093efd6429384158486664e 243 Gene3D G3DSA:3.40.50.10990 1 168 3.5E-47 T 13-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 RAM_46635 4aa3aeff7093efd6429384158486664e 243 Pfam PF00925 GTP cyclohydrolase II 4 162 1.5E-41 T 13-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 RAM_46635 4aa3aeff7093efd6429384158486664e 243 SUPERFAMILY SSF142695 1 164 1.24E-35 T 13-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 RAM_23560 66bbaa07cd20588285a9322530e69b72 293 Pfam PF12697 Alpha/beta hydrolase family 26 279 4.9E-22 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_23560 66bbaa07cd20588285a9322530e69b72 293 Gene3D G3DSA:3.40.50.1820 1 290 3.3E-47 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_23560 66bbaa07cd20588285a9322530e69b72 293 SUPERFAMILY SSF53474 7 285 1.24E-44 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_23560 66bbaa07cd20588285a9322530e69b72 293 PRINTS PR00412 Epoxide hydrolase signature 53 68 4.4E-5 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_23560 66bbaa07cd20588285a9322530e69b72 293 PRINTS PR00412 Epoxide hydrolase signature 30 48 4.4E-5 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_23560 66bbaa07cd20588285a9322530e69b72 293 PRINTS PR00412 Epoxide hydrolase signature 231 247 4.4E-5 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_23560 66bbaa07cd20588285a9322530e69b72 293 PRINTS PR00412 Epoxide hydrolase signature 264 286 4.4E-5 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_23560 66bbaa07cd20588285a9322530e69b72 293 PRINTS PR00412 Epoxide hydrolase signature 99 112 4.4E-5 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_43300 5cd17d5dd80b0b230db6d5fbcd5ac8cc 301 SUPERFAMILY SSF74650 6 299 1.95E-53 T 13-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 RAM_43300 5cd17d5dd80b0b230db6d5fbcd5ac8cc 301 Pfam PF01263 Aldose 1-epimerase 8 295 1.9E-38 T 13-10-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 RAM_43300 5cd17d5dd80b0b230db6d5fbcd5ac8cc 301 Gene3D G3DSA:2.70.98.10 8 301 2.5E-72 T 13-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 RAM_05535 5f1466cb7aa976dbea00688670b130b0 380 Gene3D G3DSA:3.30.565.10 258 376 1.4E-24 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_05535 5f1466cb7aa976dbea00688670b130b0 380 SUPERFAMILY SSF55874 293 375 3.19E-10 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_05535 5f1466cb7aa976dbea00688670b130b0 380 Pfam PF07730 Histidine kinase 183 247 2.8E-16 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_22325 0967930c89f4b449c927db7575b98843 206 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 25 203 34.918 T 13-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 RAM_22325 0967930c89f4b449c927db7575b98843 206 Pfam PF01227 GTP cyclohydrolase I 30 201 4.8E-65 T 13-10-2018 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 RAM_22325 0967930c89f4b449c927db7575b98843 206 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 31 200 7.1E-60 T 13-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 RAM_22325 0967930c89f4b449c927db7575b98843 206 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 82 98 - T 13-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 RAM_22325 0967930c89f4b449c927db7575b98843 206 Gene3D G3DSA:3.30.1130.10 71 203 3.0E-55 T 13-10-2018 RAM_22325 0967930c89f4b449c927db7575b98843 206 SUPERFAMILY SSF55620 19 201 5.04E-69 T 13-10-2018 RAM_22325 0967930c89f4b449c927db7575b98843 206 Gene3D G3DSA:1.10.286.10 13 66 1.2E-12 T 13-10-2018 RAM_21790 48d325c74dcb7c61c2eae93fa270bf6f 402 SUPERFAMILY SSF53756 1 391 6.57E-96 T 13-10-2018 RAM_21790 48d325c74dcb7c61c2eae93fa270bf6f 402 Pfam PF13439 Glycosyltransferase Family 4 21 197 2.7E-33 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 RAM_21790 48d325c74dcb7c61c2eae93fa270bf6f 402 Pfam PF00534 Glycosyl transferases group 1 213 368 2.9E-42 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 RAM_21790 48d325c74dcb7c61c2eae93fa270bf6f 402 Gene3D G3DSA:3.40.50.2000 5 388 3.5E-126 T 13-10-2018 RAM_21790 48d325c74dcb7c61c2eae93fa270bf6f 402 Gene3D G3DSA:3.40.50.2000 193 371 3.5E-126 T 13-10-2018 RAM_27770 c530ad5b6fe9acefadeabbe9326a68da 241 SUPERFAMILY SSF53335 21 170 6.29E-25 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_27770 c530ad5b6fe9acefadeabbe9326a68da 241 Gene3D G3DSA:3.40.50.150 19 197 1.3E-23 T 13-10-2018 RAM_27770 c530ad5b6fe9acefadeabbe9326a68da 241 Pfam PF13489 Methyltransferase domain 54 161 1.5E-13 T 13-10-2018 RAM_16575 29e8c1a5796a0b135afd618bb25168af 205 Pfam PF08241 Methyltransferase domain 46 140 5.6E-24 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 RAM_16575 29e8c1a5796a0b135afd618bb25168af 205 SUPERFAMILY SSF53335 5 191 1.01E-40 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_16575 29e8c1a5796a0b135afd618bb25168af 205 Gene3D G3DSA:3.40.50.150 1 199 1.1E-36 T 13-10-2018 RAM_03305 45dac61c24256c80e5266d358d04fb04 403 Gene3D G3DSA:3.30.559.10 8 360 4.6E-90 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RAM_03305 45dac61c24256c80e5266d358d04fb04 403 SUPERFAMILY SSF52777 23 151 1.48E-11 T 13-10-2018 RAM_03305 45dac61c24256c80e5266d358d04fb04 403 SUPERFAMILY SSF52777 167 401 4.89E-43 T 13-10-2018 RAM_03305 45dac61c24256c80e5266d358d04fb04 403 Gene3D G3DSA:3.30.559.30 169 374 4.6E-90 T 13-10-2018 RAM_03305 45dac61c24256c80e5266d358d04fb04 403 Pfam PF16911 Phthiocerol/phthiodiolone dimycocerosyl transferase C-terminus 281 393 2.3E-24 T 13-10-2018 IPR031641 Phthiocerol/phthiodiolone dimycocerosyl transferase, C-terminal RAM_17575 9ae12e6a589f0cdbb4e55b10772d2f66 213 Gene3D G3DSA:1.10.357.10 6 210 5.6E-34 T 13-10-2018 RAM_17575 9ae12e6a589f0cdbb4e55b10772d2f66 213 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 62 5.3E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_17575 9ae12e6a589f0cdbb4e55b10772d2f66 213 SUPERFAMILY SSF46689 5 82 4.46E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_26850 35698aadbaddaeaeadf0bde4a80d1885 438 SMART SM00387 166 277 1.4E-13 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_26850 35698aadbaddaeaeadf0bde4a80d1885 438 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 170 275 2.5E-11 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_26850 35698aadbaddaeaeadf0bde4a80d1885 438 SUPERFAMILY SSF55874 159 275 5.5E-21 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_26850 35698aadbaddaeaeadf0bde4a80d1885 438 Gene3D G3DSA:3.30.565.10 134 280 5.1E-16 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_36010 8824704c8537561e185cf54d0c5d66a2 396 PRINTS PR00385 P450 superfamily signature 348 359 3.0E-8 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_36010 8824704c8537561e185cf54d0c5d66a2 396 PRINTS PR00385 P450 superfamily signature 271 282 3.0E-8 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_36010 8824704c8537561e185cf54d0c5d66a2 396 PRINTS PR00385 P450 superfamily signature 339 348 3.0E-8 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_36010 8824704c8537561e185cf54d0c5d66a2 396 PRINTS PR00385 P450 superfamily signature 236 253 3.0E-8 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_36010 8824704c8537561e185cf54d0c5d66a2 396 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 341 350 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RAM_36010 8824704c8537561e185cf54d0c5d66a2 396 SUPERFAMILY SSF48264 19 396 3.54E-92 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_36010 8824704c8537561e185cf54d0c5d66a2 396 Pfam PF00067 Cytochrome P450 177 365 4.3E-19 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_36010 8824704c8537561e185cf54d0c5d66a2 396 PRINTS PR00359 B-class P450 signature 152 167 1.7E-56 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_36010 8824704c8537561e185cf54d0c5d66a2 396 PRINTS PR00359 B-class P450 signature 318 333 1.7E-56 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_36010 8824704c8537561e185cf54d0c5d66a2 396 PRINTS PR00359 B-class P450 signature 135 151 1.7E-56 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_36010 8824704c8537561e185cf54d0c5d66a2 396 PRINTS PR00359 B-class P450 signature 271 282 1.7E-56 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_36010 8824704c8537561e185cf54d0c5d66a2 396 PRINTS PR00359 B-class P450 signature 190 212 1.7E-56 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_36010 8824704c8537561e185cf54d0c5d66a2 396 PRINTS PR00359 B-class P450 signature 88 99 1.7E-56 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_36010 8824704c8537561e185cf54d0c5d66a2 396 PRINTS PR00359 B-class P450 signature 290 317 1.7E-56 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_36010 8824704c8537561e185cf54d0c5d66a2 396 PRINTS PR00359 B-class P450 signature 339 348 1.7E-56 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_36010 8824704c8537561e185cf54d0c5d66a2 396 PRINTS PR00359 B-class P450 signature 348 359 1.7E-56 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_36010 8824704c8537561e185cf54d0c5d66a2 396 Gene3D G3DSA:1.10.630.10 3 396 2.8E-122 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_32815 4cfbd204b1cb8eeecd4dc2f217e06e3a 799 Gene3D G3DSA:3.30.565.10 499 647 3.9E-13 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_32815 4cfbd204b1cb8eeecd4dc2f217e06e3a 799 Pfam PF08376 Nitrate and nitrite sensing 71 308 3.8E-30 T 13-10-2018 IPR013587 Nitrate/nitrite sensing protein RAM_32815 4cfbd204b1cb8eeecd4dc2f217e06e3a 799 SUPERFAMILY SSF55874 520 645 2.46E-17 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_32815 4cfbd204b1cb8eeecd4dc2f217e06e3a 799 SMART SM00387 534 646 2.5E-4 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_05910 469072410a24a2afab2ec10500c07788 234 SUPERFAMILY SSF48008 93 222 4.45E-23 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_05910 469072410a24a2afab2ec10500c07788 234 Pfam PF07729 FCD domain 96 215 1.9E-22 T 13-10-2018 IPR011711 GntR, C-terminal RAM_05910 469072410a24a2afab2ec10500c07788 234 Gene3D G3DSA:1.10.10.10 3 74 8.6E-14 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_05910 469072410a24a2afab2ec10500c07788 234 SUPERFAMILY SSF46785 3 68 1.9E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_05910 469072410a24a2afab2ec10500c07788 234 SMART SM00895 93 217 3.4E-17 T 13-10-2018 IPR011711 GntR, C-terminal RAM_05910 469072410a24a2afab2ec10500c07788 234 SMART SM00345 6 64 4.0E-6 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_05910 469072410a24a2afab2ec10500c07788 234 Pfam PF00392 Bacterial regulatory proteins, gntR family 4 64 6.3E-10 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_05910 469072410a24a2afab2ec10500c07788 234 Gene3D G3DSA:1.20.120.530 88 224 2.5E-24 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_42445 e259e1bd73f294c88f6d40be759d60c6 521 Gene3D G3DSA:3.30.379.10 38 169 3.3E-172 T 13-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 RAM_42445 e259e1bd73f294c88f6d40be759d60c6 521 Gene3D G3DSA:3.20.20.80 170 509 3.3E-172 T 13-10-2018 RAM_42445 e259e1bd73f294c88f6d40be759d60c6 521 SUPERFAMILY SSF51445 170 514 1.16E-107 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_42445 e259e1bd73f294c88f6d40be759d60c6 521 PRINTS PR00738 Glycosyl hydrolase family 20 signature 449 465 7.9E-47 T 13-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RAM_42445 e259e1bd73f294c88f6d40be759d60c6 521 PRINTS PR00738 Glycosyl hydrolase family 20 signature 467 484 7.9E-47 T 13-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RAM_42445 e259e1bd73f294c88f6d40be759d60c6 521 PRINTS PR00738 Glycosyl hydrolase family 20 signature 252 269 7.9E-47 T 13-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RAM_42445 e259e1bd73f294c88f6d40be759d60c6 521 PRINTS PR00738 Glycosyl hydrolase family 20 signature 164 181 7.9E-47 T 13-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RAM_42445 e259e1bd73f294c88f6d40be759d60c6 521 PRINTS PR00738 Glycosyl hydrolase family 20 signature 300 318 7.9E-47 T 13-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RAM_42445 e259e1bd73f294c88f6d40be759d60c6 521 PRINTS PR00738 Glycosyl hydrolase family 20 signature 322 335 7.9E-47 T 13-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RAM_42445 e259e1bd73f294c88f6d40be759d60c6 521 PRINTS PR00738 Glycosyl hydrolase family 20 signature 122 142 7.9E-47 T 13-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RAM_42445 e259e1bd73f294c88f6d40be759d60c6 521 PRINTS PR00738 Glycosyl hydrolase family 20 signature 193 214 7.9E-47 T 13-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 RAM_42445 e259e1bd73f294c88f6d40be759d60c6 521 Pfam PF00728 Glycosyl hydrolase family 20, catalytic domain 171 336 6.1E-59 T 13-10-2018 IPR015883 Glycoside hydrolase family 20, catalytic domain GO:0004553|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 RAM_42445 e259e1bd73f294c88f6d40be759d60c6 521 Pfam PF00728 Glycosyl hydrolase family 20, catalytic domain 345 485 1.1E-24 T 13-10-2018 IPR015883 Glycoside hydrolase family 20, catalytic domain GO:0004553|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 RAM_42445 e259e1bd73f294c88f6d40be759d60c6 521 SUPERFAMILY SSF55545 29 169 7.33E-27 T 13-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 RAM_42445 e259e1bd73f294c88f6d40be759d60c6 521 Pfam PF02838 Glycosyl hydrolase family 20, domain 2 37 167 5.2E-22 T 13-10-2018 IPR015882 Beta-hexosaminidase, bacterial type, N-terminal RAM_27735 63570acca7267c75f7b0f8174b2b622a 531 Pfam PF01494 FAD binding domain 6 362 2.8E-101 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_27735 63570acca7267c75f7b0f8174b2b622a 531 Gene3D G3DSA:3.30.9.50 72 293 5.0E-112 T 13-10-2018 RAM_27735 63570acca7267c75f7b0f8174b2b622a 531 SUPERFAMILY SSF51905 6 377 3.76E-57 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_27735 63570acca7267c75f7b0f8174b2b622a 531 Gene3D G3DSA:3.50.50.60 7 356 5.0E-112 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_27735 63570acca7267c75f7b0f8174b2b622a 531 Gene3D G3DSA:3.40.30.120 390 531 3.4E-44 T 13-10-2018 RAM_27735 63570acca7267c75f7b0f8174b2b622a 531 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 296 311 6.1E-45 T 13-10-2018 RAM_27735 63570acca7267c75f7b0f8174b2b622a 531 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 311 327 6.1E-45 T 13-10-2018 RAM_27735 63570acca7267c75f7b0f8174b2b622a 531 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 329 347 6.1E-45 T 13-10-2018 RAM_27735 63570acca7267c75f7b0f8174b2b622a 531 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 7 29 6.1E-45 T 13-10-2018 RAM_27735 63570acca7267c75f7b0f8174b2b622a 531 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 167 182 6.1E-45 T 13-10-2018 RAM_27735 63570acca7267c75f7b0f8174b2b622a 531 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 347 363 6.1E-45 T 13-10-2018 RAM_47305 bfe7242af63dabd523340e8f6eb9ec3b 155 Pfam PF04186 FxsA cytoplasmic membrane protein 4 109 1.6E-31 T 13-10-2018 IPR007313 FxsA cytoplasmic membrane protein GO:0016020 RAM_28390 38209b8016575990f706153e31f66d37 176 SMART SM00347 37 140 3.0E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_28390 38209b8016575990f706153e31f66d37 176 Pfam PF12802 MarR family 44 102 1.7E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_28390 38209b8016575990f706153e31f66d37 176 Gene3D G3DSA:1.10.10.10 11 165 1.4E-34 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_28390 38209b8016575990f706153e31f66d37 176 SUPERFAMILY SSF46785 11 154 1.72E-25 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_15245 d3aa032402ad348aab31cb7589676ccb 286 SUPERFAMILY SSF51735 2 250 1.58E-58 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_15245 d3aa032402ad348aab31cb7589676ccb 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 122 138 3.5E-20 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15245 d3aa032402ad348aab31cb7589676ccb 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 167 3.5E-20 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15245 d3aa032402ad348aab31cb7589676ccb 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 186 3.5E-20 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15245 d3aa032402ad348aab31cb7589676ccb 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 75 86 3.5E-20 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15245 d3aa032402ad348aab31cb7589676ccb 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 3.5E-20 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15245 d3aa032402ad348aab31cb7589676ccb 286 Gene3D G3DSA:3.40.50.720 2 278 1.9E-69 T 13-10-2018 RAM_15245 d3aa032402ad348aab31cb7589676ccb 286 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 75 86 1.0E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15245 d3aa032402ad348aab31cb7589676ccb 286 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 128 136 1.0E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15245 d3aa032402ad348aab31cb7589676ccb 286 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 167 1.0E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_15245 d3aa032402ad348aab31cb7589676ccb 286 Pfam PF00106 short chain dehydrogenase 4 184 3.8E-42 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_30155 87d330a506882153ff945fee031a5724 138 SUPERFAMILY SSF55874 26 129 1.3E-12 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_30155 87d330a506882153ff945fee031a5724 138 Gene3D G3DSA:3.30.565.10 5 134 3.4E-28 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_30155 87d330a506882153ff945fee031a5724 138 Pfam PF13581 Histidine kinase-like ATPase domain 11 129 2.7E-19 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_46625 b8407c404cc4f83a68b7764d58ac9e9a 377 Pfam PF00691 OmpA family 268 350 1.1E-5 T 13-10-2018 IPR006665 OmpA-like domain RAM_46625 b8407c404cc4f83a68b7764d58ac9e9a 377 SUPERFAMILY SSF103088 253 375 2.62E-8 T 13-10-2018 IPR036737 OmpA-like domain superfamily RAM_46625 b8407c404cc4f83a68b7764d58ac9e9a 377 Gene3D G3DSA:3.30.1330.60 247 377 4.2E-9 T 13-10-2018 IPR036737 OmpA-like domain superfamily RAM_05945 480bb3c1cebdcc0f7cdf118034f3d459 193 SMART SM00830 33 104 5.0E-15 T 13-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 RAM_05945 480bb3c1cebdcc0f7cdf118034f3d459 193 Gene3D G3DSA:1.20.140.170 27 190 4.7E-53 T 13-10-2018 RAM_05945 480bb3c1cebdcc0f7cdf118034f3d459 193 TIGRFAM TIGR01806 CM_mono2: putative chorismate mutase 28 140 4.7E-29 T 13-10-2018 IPR008240 Chorismate mutase, periplasmic KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 RAM_05945 480bb3c1cebdcc0f7cdf118034f3d459 193 Pfam PF01817 Chorismate mutase type II 34 101 3.4E-9 T 13-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 RAM_05945 480bb3c1cebdcc0f7cdf118034f3d459 193 SUPERFAMILY SSF48600 33 186 9.16E-34 T 13-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 RAM_00485 439074523b135ad2962e03be3d005d14 215 SUPERFAMILY SSF161098 14 198 7.06E-28 T 13-10-2018 IPR035906 MetI-like superfamily RAM_00485 439074523b135ad2962e03be3d005d14 215 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 205 4.9E-16 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_00485 439074523b135ad2962e03be3d005d14 215 Gene3D G3DSA:1.10.3720.10 11 208 3.5E-24 T 13-10-2018 IPR035906 MetI-like superfamily RAM_27405 28b9a1b21c6060c97a4a38918319d87e 176 SUPERFAMILY SSF48498 62 168 3.86E-15 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_27405 28b9a1b21c6060c97a4a38918319d87e 176 Gene3D G3DSA:1.10.10.60 1 39 8.5E-15 T 13-10-2018 RAM_27405 28b9a1b21c6060c97a4a38918319d87e 176 SUPERFAMILY SSF46689 2 48 1.46E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_27405 28b9a1b21c6060c97a4a38918319d87e 176 Pfam PF00440 Bacterial regulatory proteins, tetR family 2 45 2.3E-14 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_27405 28b9a1b21c6060c97a4a38918319d87e 176 Pfam PF16859 Bacterial transcriptional repressor C-terminal 67 168 2.2E-15 T 13-10-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RAM_27405 28b9a1b21c6060c97a4a38918319d87e 176 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 1 14 2.7E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_27405 28b9a1b21c6060c97a4a38918319d87e 176 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 22 45 2.7E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_27405 28b9a1b21c6060c97a4a38918319d87e 176 Gene3D G3DSA:1.10.357.10 41 173 3.6E-16 T 13-10-2018 RAM_23300 12edb84991f73a760daf7f03a4ccfecf 329 Gene3D G3DSA:1.10.1040.10 198 328 2.3E-40 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RAM_23300 12edb84991f73a760daf7f03a4ccfecf 329 SUPERFAMILY SSF51735 1 110 2.37E-13 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_23300 12edb84991f73a760daf7f03a4ccfecf 329 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 197 317 2.2E-30 T 13-10-2018 IPR013752 Ketopantoate reductase, C-terminal domain RAM_23300 12edb84991f73a760daf7f03a4ccfecf 329 Gene3D G3DSA:3.40.50.720 1 195 1.2E-60 T 13-10-2018 RAM_23300 12edb84991f73a760daf7f03a4ccfecf 329 SUPERFAMILY SSF48179 197 319 6.46E-30 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RAM_23300 12edb84991f73a760daf7f03a4ccfecf 329 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 104 1.3E-22 T 13-10-2018 IPR013332 Ketopantoate reductase, N-terminal domain RAM_42620 c45e59c1600c8c3b46c89c0c2d847c81 153 Gene3D G3DSA:1.10.10.60 38 86 7.5E-6 T 13-10-2018 RAM_42620 c45e59c1600c8c3b46c89c0c2d847c81 153 SUPERFAMILY SSF46689 47 131 4.3E-5 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_22605 4dfa2f71d3749351a5c6856b06e110a8 328 SUPERFAMILY SSF75005 16 327 1.06E-71 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily RAM_22605 4dfa2f71d3749351a5c6856b06e110a8 328 Gene3D G3DSA:2.115.10.20 23 327 2.4E-84 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily RAM_22605 4dfa2f71d3749351a5c6856b06e110a8 328 Pfam PF04616 Glycosyl hydrolases family 43 40 325 3.1E-57 T 13-10-2018 IPR006710 Glycoside hydrolase, family 43 GO:0004553|GO:0005975 RAM_22605 4dfa2f71d3749351a5c6856b06e110a8 328 PIRSF PIRSF026534 4 328 6.5E-102 T 13-10-2018 IPR016840 Glycoside hydrolase, family 43, endo-1, 5-alpha-L-arabinosidase GO:0046558 RAM_19775 8d31896fa302f297348c413b963ffe73 198 Gene3D G3DSA:1.10.10.60 9 57 2.4E-13 T 13-10-2018 RAM_19775 8d31896fa302f297348c413b963ffe73 198 SUPERFAMILY SSF46689 12 77 2.79E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_19775 8d31896fa302f297348c413b963ffe73 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 62 3.6E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_19775 8d31896fa302f297348c413b963ffe73 198 Gene3D G3DSA:1.10.357.10 59 194 2.0E-19 T 13-10-2018 RAM_27395 0077be7f92be0f4eaa0174e6f4a213e6 280 SUPERFAMILY SSF51735 2 185 1.39E-33 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_27395 0077be7f92be0f4eaa0174e6f4a213e6 280 Gene3D G3DSA:3.40.50.720 1 268 3.6E-58 T 13-10-2018 RAM_27395 0077be7f92be0f4eaa0174e6f4a213e6 280 Pfam PF00106 short chain dehydrogenase 4 182 6.6E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_28850 87525970faffb772acbdc0f82a86ddd2 477 SUPERFAMILY SSF103473 4 453 2.35E-60 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_28850 87525970faffb772acbdc0f82a86ddd2 477 Gene3D G3DSA:1.20.1720.10 6 227 3.1E-41 T 13-10-2018 RAM_28850 87525970faffb772acbdc0f82a86ddd2 477 PRINTS PR01036 Tetracycline resistance protein TetB signature 100 120 5.4E-8 T 13-10-2018 RAM_28850 87525970faffb772acbdc0f82a86ddd2 477 PRINTS PR01036 Tetracycline resistance protein TetB signature 334 354 5.4E-8 T 13-10-2018 RAM_28850 87525970faffb772acbdc0f82a86ddd2 477 PRINTS PR01036 Tetracycline resistance protein TetB signature 397 416 5.4E-8 T 13-10-2018 RAM_28850 87525970faffb772acbdc0f82a86ddd2 477 PRINTS PR01036 Tetracycline resistance protein TetB signature 130 154 5.4E-8 T 13-10-2018 RAM_28850 87525970faffb772acbdc0f82a86ddd2 477 Pfam PF07690 Major Facilitator Superfamily 11 405 1.7E-42 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_28850 87525970faffb772acbdc0f82a86ddd2 477 Gene3D G3DSA:1.20.1250.20 254 462 2.3E-22 T 13-10-2018 RAM_06765 15ca11ef12cfd437854042041f4968da 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 2.3E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_06765 15ca11ef12cfd437854042041f4968da 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 2.3E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_06765 15ca11ef12cfd437854042041f4968da 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 2.3E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_06765 15ca11ef12cfd437854042041f4968da 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 2.3E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_06765 15ca11ef12cfd437854042041f4968da 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 2.3E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_06765 15ca11ef12cfd437854042041f4968da 251 Gene3D G3DSA:3.40.50.720 2 250 1.2E-42 T 13-10-2018 RAM_06765 15ca11ef12cfd437854042041f4968da 251 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 247 5.8E-31 T 13-10-2018 RAM_06765 15ca11ef12cfd437854042041f4968da 251 SUPERFAMILY SSF51735 2 249 1.34E-43 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_35665 b17cc22f064b0d17468c84634f79ad89 281 Gene3D G3DSA:3.40.50.1110 26 280 3.1E-70 T 13-10-2018 IPR036514 SGNH hydrolase superfamily RAM_35665 b17cc22f064b0d17468c84634f79ad89 281 SUPERFAMILY SSF52266 29 279 4.33E-64 T 13-10-2018 RAM_35665 b17cc22f064b0d17468c84634f79ad89 281 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 32 270 1.1E-26 T 13-10-2018 IPR013830 SGNH hydrolase-type esterase domain RAM_27565 b527d2991f492c8a90718569f03f0ed1 253 Gene3D G3DSA:3.40.50.720 6 237 2.8E-28 T 13-10-2018 RAM_27565 b527d2991f492c8a90718569f03f0ed1 253 Pfam PF01370 NAD dependent epimerase/dehydratase family 20 177 8.5E-14 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 RAM_27565 b527d2991f492c8a90718569f03f0ed1 253 SUPERFAMILY SSF51735 21 223 9.51E-25 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_25205 47a32875f9496b815fc61825b4df1179 357 Gene3D G3DSA:1.10.8.300 214 331 3.1E-34 T 13-10-2018 RAM_25205 47a32875f9496b815fc61825b4df1179 357 SUPERFAMILY SSF52540 31 306 2.38E-42 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_25205 47a32875f9496b815fc61825b4df1179 357 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 55 185 1.5E-59 T 13-10-2018 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 RAM_25205 47a32875f9496b815fc61825b4df1179 357 Gene3D G3DSA:3.40.50.300 22 207 1.0E-45 T 13-10-2018 RAM_25205 47a32875f9496b815fc61825b4df1179 357 PIRSF PIRSF002849 5 336 3.3E-134 T 13-10-2018 RAM_17815 5ef70aed3b34c364fad63e0d8a65e69d 363 Pfam PF12721 RIP homotypic interaction motif 155 188 7.7E-4 T 13-10-2018 IPR025735 RHIM domain Reactome: R-HSA-168927|Reactome: R-HSA-1810476|Reactome: R-HSA-2562578|Reactome: R-HSA-9013957|Reactome: R-HSA-937041 RAM_17815 5ef70aed3b34c364fad63e0d8a65e69d 363 Pfam PF12721 RIP homotypic interaction motif 108 124 0.14 T 13-10-2018 IPR025735 RHIM domain Reactome: R-HSA-168927|Reactome: R-HSA-1810476|Reactome: R-HSA-2562578|Reactome: R-HSA-9013957|Reactome: R-HSA-937041 RAM_14360 c3859a27e580b3f955e475455a070def 261 PIRSF PIRSF006648 12 260 3.8E-24 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 RAM_14360 c3859a27e580b3f955e475455a070def 261 Pfam PF01061 ABC-2 type transporter 48 230 2.2E-16 T 13-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 RAM_22040 e2b98e099e2fab94d275a26a973826f8 232 SUPERFAMILY SSF117916 9 92 1.9E-14 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily RAM_22040 e2b98e099e2fab94d275a26a973826f8 232 Pfam PF01883 Iron-sulfur cluster assembly protein 9 77 3.6E-12 T 13-10-2018 IPR002744 MIP18 family-like RAM_22040 e2b98e099e2fab94d275a26a973826f8 232 Gene3D G3DSA:3.30.300.130 5 102 4.7E-13 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily RAM_04945 ab8079cb205eb6af2a3e6ca9d515153b 218 SUPERFAMILY SSF52172 2 136 1.38E-33 T 13-10-2018 IPR011006 CheY-like superfamily RAM_04945 ab8079cb205eb6af2a3e6ca9d515153b 218 Pfam PF00072 Response regulator receiver domain 4 117 1.0E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_04945 ab8079cb205eb6af2a3e6ca9d515153b 218 SUPERFAMILY SSF46894 142 213 2.96E-20 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_04945 ab8079cb205eb6af2a3e6ca9d515153b 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 167 183 3.6E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_04945 ab8079cb205eb6af2a3e6ca9d515153b 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 183 195 3.6E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_04945 ab8079cb205eb6af2a3e6ca9d515153b 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 153 167 3.6E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_04945 ab8079cb205eb6af2a3e6ca9d515153b 218 SMART SM00448 2 117 4.1E-30 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_04945 ab8079cb205eb6af2a3e6ca9d515153b 218 SMART SM00421 150 207 2.1E-21 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_04945 ab8079cb205eb6af2a3e6ca9d515153b 218 Gene3D G3DSA:3.40.50.12740 2 213 1.9E-66 T 13-10-2018 RAM_04945 ab8079cb205eb6af2a3e6ca9d515153b 218 Pfam PF00196 Bacterial regulatory proteins, luxR family 152 207 1.9E-15 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_01290 57e27d4d7f527e9c6db77bc1bcc4f6e3 219 SUPERFAMILY SSF46785 152 218 1.59E-6 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_01290 57e27d4d7f527e9c6db77bc1bcc4f6e3 219 Gene3D G3DSA:1.10.10.10 150 205 1.1E-7 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_01290 57e27d4d7f527e9c6db77bc1bcc4f6e3 219 Pfam PF09339 IclR helix-turn-helix domain 160 199 7.7E-7 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RAM_01290 57e27d4d7f527e9c6db77bc1bcc4f6e3 219 SMART SM00448 2 110 1.2E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_01290 57e27d4d7f527e9c6db77bc1bcc4f6e3 219 PIRSF PIRSF006171 1 219 4.9E-70 T 13-10-2018 IPR024187 Signal transduction response regulator, citrate/malate metabolism GO:0000160|GO:0003700 RAM_01290 57e27d4d7f527e9c6db77bc1bcc4f6e3 219 SUPERFAMILY SSF52172 1 152 2.85E-29 T 13-10-2018 IPR011006 CheY-like superfamily RAM_01290 57e27d4d7f527e9c6db77bc1bcc4f6e3 219 Pfam PF00072 Response regulator receiver domain 5 110 2.6E-18 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_01290 57e27d4d7f527e9c6db77bc1bcc4f6e3 219 Gene3D G3DSA:3.40.50.2300 1 127 2.9E-24 T 13-10-2018 RAM_18310 ccc3be92f088365436febeec16056d3a 224 Pfam PF00440 Bacterial regulatory proteins, tetR family 26 72 5.4E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_18310 ccc3be92f088365436febeec16056d3a 224 SUPERFAMILY SSF46689 15 86 3.95E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_18310 ccc3be92f088365436febeec16056d3a 224 Gene3D G3DSA:1.10.357.10 12 216 1.2E-45 T 13-10-2018 RAM_18310 ccc3be92f088365436febeec16056d3a 224 Pfam PF13305 WHG domain 107 193 7.0E-16 T 13-10-2018 IPR025996 WHG domain RAM_18310 ccc3be92f088365436febeec16056d3a 224 SUPERFAMILY SSF48498 104 211 1.78E-15 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_10510 571194e1bf33514dc99bb94b6b9462fe 320 SUPERFAMILY SSF55729 128 317 1.56E-22 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_10510 571194e1bf33514dc99bb94b6b9462fe 320 Gene3D G3DSA:3.40.630.30 1 320 6.6E-65 T 13-10-2018 RAM_10510 571194e1bf33514dc99bb94b6b9462fe 320 Pfam PF00583 Acetyltransferase (GNAT) family 186 308 6.3E-8 T 13-10-2018 IPR000182 GNAT domain RAM_10510 571194e1bf33514dc99bb94b6b9462fe 320 SUPERFAMILY SSF55729 1 110 9.22E-11 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_34205 5647b9a60f2d796ccebe5d0799b7d4e6 123 Gene3D G3DSA:3.30.370.10 27 105 2.7E-12 T 13-10-2018 IPR035905 Barstar-like superfamily RAM_34205 5647b9a60f2d796ccebe5d0799b7d4e6 123 Pfam PF01337 Barstar (barnase inhibitor) 30 103 4.2E-23 T 13-10-2018 IPR000468 Barstar (barnase inhibitor) RAM_34205 5647b9a60f2d796ccebe5d0799b7d4e6 123 SUPERFAMILY SSF52038 27 108 3.01E-20 T 13-10-2018 IPR035905 Barstar-like superfamily RAM_17090 83c6932dfe644fc04590b3fd692eed58 169 Pfam PF04978 Protein of unknown function (DUF664) 18 165 2.2E-31 T 13-10-2018 IPR007061 Protein of unknown function DUF664 RAM_17090 83c6932dfe644fc04590b3fd692eed58 169 Gene3D G3DSA:1.20.120.450 2 166 2.3E-25 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_17090 83c6932dfe644fc04590b3fd692eed58 169 SUPERFAMILY SSF109854 4 164 1.1E-33 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_05015 b7331dcb0a90dc52e6f510bad718a541 433 SUPERFAMILY SSF103473 15 427 2.22E-63 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_05015 b7331dcb0a90dc52e6f510bad718a541 433 Pfam PF07690 Major Facilitator Superfamily 21 384 4.0E-43 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_05015 b7331dcb0a90dc52e6f510bad718a541 433 Gene3D G3DSA:1.20.1250.20 247 428 4.4E-17 T 13-10-2018 RAM_05015 b7331dcb0a90dc52e6f510bad718a541 433 Gene3D G3DSA:1.20.1720.10 18 245 7.5E-49 T 13-10-2018 RAM_05015 b7331dcb0a90dc52e6f510bad718a541 433 PRINTS PR01036 Tetracycline resistance protein TetB signature 140 164 2.5E-7 T 13-10-2018 RAM_05015 b7331dcb0a90dc52e6f510bad718a541 433 PRINTS PR01036 Tetracycline resistance protein TetB signature 288 312 2.5E-7 T 13-10-2018 RAM_05015 b7331dcb0a90dc52e6f510bad718a541 433 PRINTS PR01036 Tetracycline resistance protein TetB signature 20 44 2.5E-7 T 13-10-2018 RAM_05015 b7331dcb0a90dc52e6f510bad718a541 433 PRINTS PR01036 Tetracycline resistance protein TetB signature 110 130 2.5E-7 T 13-10-2018 RAM_05015 b7331dcb0a90dc52e6f510bad718a541 433 PRINTS PR01036 Tetracycline resistance protein TetB signature 204 222 2.5E-7 T 13-10-2018 RAM_19175 5f4ad55e3cf22fdb6f0f7439411bf90e 224 Gene3D G3DSA:1.10.10.10 120 222 5.1E-34 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_19175 5f4ad55e3cf22fdb6f0f7439411bf90e 224 Gene3D G3DSA:3.40.50.2300 2 119 2.6E-34 T 13-10-2018 RAM_19175 5f4ad55e3cf22fdb6f0f7439411bf90e 224 SMART SM00448 2 112 3.3E-40 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_19175 5f4ad55e3cf22fdb6f0f7439411bf90e 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 221 3.6E-27 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_19175 5f4ad55e3cf22fdb6f0f7439411bf90e 224 Pfam PF00072 Response regulator receiver domain 4 112 5.7E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_19175 5f4ad55e3cf22fdb6f0f7439411bf90e 224 SUPERFAMILY SSF52172 4 181 1.51E-41 T 13-10-2018 IPR011006 CheY-like superfamily RAM_19175 5f4ad55e3cf22fdb6f0f7439411bf90e 224 SMART SM00862 145 221 6.7E-29 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_39920 a549c4ef83e37860476486e21e4eaae8 190 SUPERFAMILY SSF89028 7 185 6.87E-59 T 13-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 RAM_39920 a549c4ef83e37860476486e21e4eaae8 190 ProDom PD007457 TRANSFERASE ADENOSYLTRANSFERASE COBALAMIN ATP:COBIALAMIN ADENOSYLTRANSFERASE PDUO TYPE RELATED ACIDURIA YVQK 14 184 3.0E-56 T 13-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 RAM_39920 a549c4ef83e37860476486e21e4eaae8 190 Gene3D G3DSA:1.20.1200.10 29 190 6.4E-59 T 13-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 RAM_39920 a549c4ef83e37860476486e21e4eaae8 190 Pfam PF01923 Cobalamin adenosyltransferase 8 175 2.0E-57 T 13-10-2018 IPR016030 Cobalamin adenosyltransferase-like KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 RAM_39920 a549c4ef83e37860476486e21e4eaae8 190 TIGRFAM TIGR00636 PduO_Nterm: ATP:cob(I)alamin adenosyltransferase 9 179 4.0E-52 T 13-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 RAM_03695 7fb5a843c1d3e9351ce12904a29c4741 238 Pfam PF14230 Domain of unknown function (DUF4333) 157 228 1.8E-22 T 13-10-2018 IPR025637 Domain of unknown function DUF4333 RAM_17925 df3ce549b0a242ef4116a634e04231eb 1005 SUPERFAMILY SSF52540 519 745 1.65E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_17925 df3ce549b0a242ef4116a634e04231eb 1005 SUPERFAMILY SSF52540 751 1000 2.4E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_17925 df3ce549b0a242ef4116a634e04231eb 1005 Pfam PF12419 SNF2 Helicase protein 351 487 9.5E-37 T 13-10-2018 IPR022138 Helicase SWF/SNF-related RAM_17925 df3ce549b0a242ef4116a634e04231eb 1005 Gene3D G3DSA:3.40.50.300 755 956 8.5E-82 T 13-10-2018 RAM_17925 df3ce549b0a242ef4116a634e04231eb 1005 SMART SM00487 528 717 4.1E-32 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RAM_17925 df3ce549b0a242ef4116a634e04231eb 1005 SMART SM00490 858 942 5.4E-17 T 13-10-2018 IPR001650 Helicase, C-terminal RAM_17925 df3ce549b0a242ef4116a634e04231eb 1005 Pfam PF00176 SNF2 family N-terminal domain 551 814 2.1E-51 T 13-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 RAM_17925 df3ce549b0a242ef4116a634e04231eb 1005 Pfam PF00271 Helicase conserved C-terminal domain 834 942 3.5E-12 T 13-10-2018 IPR001650 Helicase, C-terminal RAM_17925 df3ce549b0a242ef4116a634e04231eb 1005 Gene3D G3DSA:3.40.50.10810 509 746 9.6E-66 T 13-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily RAM_17925 df3ce549b0a242ef4116a634e04231eb 1005 Gene3D G3DSA:1.20.120.850 769 992 8.5E-82 T 13-10-2018 RAM_18105 327ebf03fd6bdad8b5c03ffcb04e17c5 134 Gene3D G3DSA:3.10.450.30 29 134 1.8E-9 T 13-10-2018 RAM_18105 327ebf03fd6bdad8b5c03ffcb04e17c5 134 SUPERFAMILY SSF53933 60 134 1.5E-10 T 13-10-2018 IPR016191 Ribonuclease/ribotoxin GO:0003723|GO:0004540 RAM_18105 327ebf03fd6bdad8b5c03ffcb04e17c5 134 Pfam PF00545 ribonuclease 71 132 2.4E-7 T 13-10-2018 IPR000026 Guanine-specific ribonuclease N1/T1/U2 GO:0003723|GO:0004521 RAM_32540 c5ead4e34806b2d0f902f6809cc3c1de 322 Pfam PF03703 Bacterial PH domain 235 298 1.8E-6 T 13-10-2018 IPR005182 Domain of unknown function DUF304 RAM_15635 950b6186761587111c1155057cf8a307 568 Gene3D G3DSA:1.50.10.10 208 560 4.6E-56 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 RAM_15635 950b6186761587111c1155057cf8a307 568 SUPERFAMILY SSF48208 215 557 3.69E-59 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_15635 950b6186761587111c1155057cf8a307 568 Pfam PF01204 Trehalase 372 526 5.1E-6 T 13-10-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 RAM_14690 613603ed5057e2f0f5427fb760a05d1e 275 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 149 177 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_14690 613603ed5057e2f0f5427fb760a05d1e 275 SUPERFAMILY SSF51735 1 242 2.42E-51 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_14690 613603ed5057e2f0f5427fb760a05d1e 275 Gene3D G3DSA:3.40.50.720 1 273 1.6E-69 T 13-10-2018 RAM_14690 613603ed5057e2f0f5427fb760a05d1e 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 2.0E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_14690 613603ed5057e2f0f5427fb760a05d1e 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 2.0E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_14690 613603ed5057e2f0f5427fb760a05d1e 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 2.0E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_14690 613603ed5057e2f0f5427fb760a05d1e 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 2.0E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_14690 613603ed5057e2f0f5427fb760a05d1e 275 Pfam PF00106 short chain dehydrogenase 4 199 1.7E-30 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_00950 91431605b4816febbd07d49e122d7207 342 Pfam PF13845 Septum formation 68 284 2.0E-73 T 13-10-2018 IPR026004 Septum formation-related domain RAM_13070 44a7ac90422957373bf38e20f6bb496c 104 Pfam PF11298 Protein of unknown function (DUF3099) 12 80 6.9E-31 T 13-10-2018 IPR021449 Protein of unknown function DUF3099 RAM_18650 9b175f32d9b7ecc2130e4156c80be62d 232 Pfam PF00440 Bacterial regulatory proteins, tetR family 30 67 8.2E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_18650 9b175f32d9b7ecc2130e4156c80be62d 232 Gene3D G3DSA:1.10.357.10 4 226 6.6E-50 T 13-10-2018 RAM_18650 9b175f32d9b7ecc2130e4156c80be62d 232 SUPERFAMILY SSF46689 10 85 3.95E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_18650 9b175f32d9b7ecc2130e4156c80be62d 232 SUPERFAMILY SSF48498 96 225 1.87E-19 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_23855 6894305e29b7bd844e62c2a03db83fe0 344 Gene3D G3DSA:1.10.150.130 21 144 1.1E-11 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal RAM_23855 6894305e29b7bd844e62c2a03db83fe0 344 Gene3D G3DSA:1.10.443.10 150 333 1.9E-34 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 RAM_23855 6894305e29b7bd844e62c2a03db83fe0 344 SUPERFAMILY SSF56349 149 341 8.24E-34 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RAM_23855 6894305e29b7bd844e62c2a03db83fe0 344 SUPERFAMILY SSF47823 28 142 9.02E-11 T 13-10-2018 RAM_23855 6894305e29b7bd844e62c2a03db83fe0 344 Pfam PF00589 Phage integrase family 158 321 6.2E-10 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RAM_00515 cb214e4178c2395917ba6e0cfdb51898 210 Gene3D G3DSA:1.10.10.10 2 104 1.0E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_00515 cb214e4178c2395917ba6e0cfdb51898 210 Pfam PF03551 Transcriptional regulator PadR-like family 14 89 5.1E-13 T 13-10-2018 IPR005149 Transcription regulator PadR, N-terminal RAM_00515 cb214e4178c2395917ba6e0cfdb51898 210 SUPERFAMILY SSF46785 10 181 1.43E-32 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_29840 69d59e8cd7138e0d4cbe8e5008f71a58 182 Gene3D G3DSA:3.30.420.10 1 150 1.5E-6 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RAM_29840 69d59e8cd7138e0d4cbe8e5008f71a58 182 Pfam PF13683 Integrase core domain 86 151 3.8E-13 T 13-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RAM_29840 69d59e8cd7138e0d4cbe8e5008f71a58 182 SUPERFAMILY SSF53098 5 151 2.12E-17 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily RAM_00235 1387e33d0f9b2d2d09fef07d447dbb2f 214 Pfam PF00117 Glutamine amidotransferase class-I 5 187 2.8E-52 T 13-10-2018 IPR017926 Glutamine amidotransferase RAM_00235 1387e33d0f9b2d2d09fef07d447dbb2f 214 Gene3D G3DSA:3.40.50.880 1 193 3.2E-61 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_00235 1387e33d0f9b2d2d09fef07d447dbb2f 214 PRINTS PR00097 Anthranilate synthase component II signature 46 55 1.3E-34 T 13-10-2018 RAM_00235 1387e33d0f9b2d2d09fef07d447dbb2f 214 PRINTS PR00097 Anthranilate synthase component II signature 3 17 1.3E-34 T 13-10-2018 RAM_00235 1387e33d0f9b2d2d09fef07d447dbb2f 214 PRINTS PR00097 Anthranilate synthase component II signature 99 107 1.3E-34 T 13-10-2018 RAM_00235 1387e33d0f9b2d2d09fef07d447dbb2f 214 PRINTS PR00097 Anthranilate synthase component II signature 74 85 1.3E-34 T 13-10-2018 RAM_00235 1387e33d0f9b2d2d09fef07d447dbb2f 214 PRINTS PR00097 Anthranilate synthase component II signature 119 131 1.3E-34 T 13-10-2018 RAM_00235 1387e33d0f9b2d2d09fef07d447dbb2f 214 PRINTS PR00097 Anthranilate synthase component II signature 165 178 1.3E-34 T 13-10-2018 RAM_00235 1387e33d0f9b2d2d09fef07d447dbb2f 214 PRINTS PR00096 Glutamine amidotransferase superfamily signature 165 178 7.2E-14 T 13-10-2018 RAM_00235 1387e33d0f9b2d2d09fef07d447dbb2f 214 PRINTS PR00096 Glutamine amidotransferase superfamily signature 46 55 7.2E-14 T 13-10-2018 RAM_00235 1387e33d0f9b2d2d09fef07d447dbb2f 214 PRINTS PR00096 Glutamine amidotransferase superfamily signature 74 85 7.2E-14 T 13-10-2018 RAM_00235 1387e33d0f9b2d2d09fef07d447dbb2f 214 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 43 57 7.1E-8 T 13-10-2018 RAM_00235 1387e33d0f9b2d2d09fef07d447dbb2f 214 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 74 90 7.1E-8 T 13-10-2018 RAM_00235 1387e33d0f9b2d2d09fef07d447dbb2f 214 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 3 186 4.4E-62 T 13-10-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RAM_00235 1387e33d0f9b2d2d09fef07d447dbb2f 214 SUPERFAMILY SSF52317 1 189 8.73E-54 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_14610 5f2a40c85062074ab8b27cc7a269aac7 605 SMART SM00091 46 113 1.6E-7 T 13-10-2018 IPR000014 PAS domain RAM_14610 5f2a40c85062074ab8b27cc7a269aac7 605 Gene3D G3DSA:3.30.70.270 166 345 6.1E-43 T 13-10-2018 RAM_14610 5f2a40c85062074ab8b27cc7a269aac7 605 Pfam PF00563 EAL domain 353 587 8.9E-30 T 13-10-2018 IPR001633 EAL domain RAM_14610 5f2a40c85062074ab8b27cc7a269aac7 605 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 170 331 6.3E-24 T 13-10-2018 IPR000160 GGDEF domain RAM_14610 5f2a40c85062074ab8b27cc7a269aac7 605 SMART SM00052 343 594 7.5E-17 T 13-10-2018 IPR001633 EAL domain RAM_14610 5f2a40c85062074ab8b27cc7a269aac7 605 SUPERFAMILY SSF55073 177 335 4.32E-33 T 13-10-2018 IPR029787 Nucleotide cyclase RAM_14610 5f2a40c85062074ab8b27cc7a269aac7 605 SUPERFAMILY SSF55785 47 142 6.46E-12 T 13-10-2018 IPR035965 PAS domain superfamily RAM_14610 5f2a40c85062074ab8b27cc7a269aac7 605 SMART SM00267 161 333 1.5E-40 T 13-10-2018 IPR000160 GGDEF domain RAM_14610 5f2a40c85062074ab8b27cc7a269aac7 605 Pfam PF00990 Diguanylate cyclase, GGDEF domain 173 328 3.2E-32 T 13-10-2018 IPR000160 GGDEF domain RAM_14610 5f2a40c85062074ab8b27cc7a269aac7 605 Gene3D G3DSA:3.30.450.20 39 157 2.7E-11 T 13-10-2018 RAM_14610 5f2a40c85062074ab8b27cc7a269aac7 605 Pfam PF13426 PAS domain 56 144 1.6E-7 T 13-10-2018 IPR000014 PAS domain RAM_14610 5f2a40c85062074ab8b27cc7a269aac7 605 SUPERFAMILY SSF141868 351 599 1.05E-31 T 13-10-2018 IPR035919 EAL domain superfamily RAM_14610 5f2a40c85062074ab8b27cc7a269aac7 605 Gene3D G3DSA:3.20.20.450 346 602 3.0E-44 T 13-10-2018 IPR035919 EAL domain superfamily RAM_14610 5f2a40c85062074ab8b27cc7a269aac7 605 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 47 168 5.1E-10 T 13-10-2018 IPR000014 PAS domain RAM_28060 2e84a80d889e86f63eab95e4e69bb866 376 SUPERFAMILY SSF53850 55 335 4.05E-44 T 13-10-2018 RAM_28060 2e84a80d889e86f63eab95e4e69bb866 376 Pfam PF13343 Bacterial extracellular solute-binding protein 124 312 2.0E-12 T 13-10-2018 RAM_28060 2e84a80d889e86f63eab95e4e69bb866 376 Gene3D G3DSA:3.40.190.10 112 320 8.3E-33 T 13-10-2018 RAM_28060 2e84a80d889e86f63eab95e4e69bb866 376 Gene3D G3DSA:3.40.190.10 164 270 8.3E-33 T 13-10-2018 RAM_36580 001d2622e720e8d4160219befff674a1 245 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 138 166 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_36580 001d2622e720e8d4160219befff674a1 245 SUPERFAMILY SSF51735 8 244 3.1E-80 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_36580 001d2622e720e8d4160219befff674a1 245 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 243 1.2E-63 T 13-10-2018 RAM_36580 001d2622e720e8d4160219befff674a1 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 6.2E-45 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36580 001d2622e720e8d4160219befff674a1 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 6.2E-45 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36580 001d2622e720e8d4160219befff674a1 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 6.2E-45 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36580 001d2622e720e8d4160219befff674a1 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 6.2E-45 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36580 001d2622e720e8d4160219befff674a1 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 206 226 6.2E-45 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36580 001d2622e720e8d4160219befff674a1 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 6.2E-45 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36580 001d2622e720e8d4160219befff674a1 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 9.2E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36580 001d2622e720e8d4160219befff674a1 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 9.2E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36580 001d2622e720e8d4160219befff674a1 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 77 88 9.2E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36580 001d2622e720e8d4160219befff674a1 245 Gene3D G3DSA:3.40.50.720 1 245 3.2E-79 T 13-10-2018 RAM_06070 7feb78da0161d2246580413bb543d1a4 451 TIGRFAM TIGR00700 GABAtrnsam: 4-aminobutyrate transaminase 33 446 1.8E-173 T 13-10-2018 IPR004632 4-aminobutyrate aminotransferase, bacterial GO:0003867|GO:0009448 RAM_06070 7feb78da0161d2246580413bb543d1a4 451 Gene3D G3DSA:3.40.640.10 83 344 6.3E-162 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_06070 7feb78da0161d2246580413bb543d1a4 451 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 261 298 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RAM_06070 7feb78da0161d2246580413bb543d1a4 451 PIRSF PIRSF000521 147 448 2.9E-28 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RAM_06070 7feb78da0161d2246580413bb543d1a4 451 PIRSF PIRSF000521 2 154 4.1E-10 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RAM_06070 7feb78da0161d2246580413bb543d1a4 451 SUPERFAMILY SSF53383 44 445 1.87E-120 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_06070 7feb78da0161d2246580413bb543d1a4 451 Gene3D G3DSA:3.90.1150.10 25 441 6.3E-162 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_06070 7feb78da0161d2246580413bb543d1a4 451 Pfam PF00202 Aminotransferase class-III 45 445 5.0E-120 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RAM_37500 f2f63f0cf931a944230d39825f93e11c 855 SUPERFAMILY SSF52540 428 787 1.33E-17 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_37500 f2f63f0cf931a944230d39825f93e11c 855 Pfam PF12846 AAA-like domain 471 832 6.6E-46 T 13-10-2018 RAM_44570 1db07c95d294364b58ff116cc57ee91d 318 Pfam PF00588 SpoU rRNA Methylase family 165 305 2.1E-34 T 13-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 RAM_44570 1db07c95d294364b58ff116cc57ee91d 318 SUPERFAMILY SSF55315 65 145 1.12E-14 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like RAM_44570 1db07c95d294364b58ff116cc57ee91d 318 SMART SM00967 72 148 5.8E-18 T 13-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 RAM_44570 1db07c95d294364b58ff116cc57ee91d 318 Gene3D G3DSA:3.40.1280.10 146 313 2.4E-48 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RAM_44570 1db07c95d294364b58ff116cc57ee91d 318 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 71 312 6.7E-58 T 13-10-2018 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 Reactome: R-HSA-6793080 RAM_44570 1db07c95d294364b58ff116cc57ee91d 318 SUPERFAMILY SSF75217 137 316 2.16E-43 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases RAM_44570 1db07c95d294364b58ff116cc57ee91d 318 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 72 147 5.3E-16 T 13-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 RAM_44570 1db07c95d294364b58ff116cc57ee91d 318 Gene3D G3DSA:3.30.1330.30 61 144 2.7E-8 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like RAM_27360 2472910ed9d9f6025da7bae28e07005e 316 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 124 299 6.1E-9 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_27360 2472910ed9d9f6025da7bae28e07005e 316 SUPERFAMILY SSF161098 76 301 1.96E-39 T 13-10-2018 IPR035906 MetI-like superfamily RAM_27360 2472910ed9d9f6025da7bae28e07005e 316 Gene3D G3DSA:1.10.3720.10 72 315 7.2E-48 T 13-10-2018 IPR035906 MetI-like superfamily RAM_24505 6ac81f28256ab71cf3ea3926c15392b3 424 SUPERFAMILY SSF52540 41 225 1.51E-7 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_11090 a0c084b958dea7a17267561e07ae8a76 205 Gene3D G3DSA:2.40.380.10 1 186 9.9E-55 T 13-10-2018 IPR035930 FomD-like superfamily RAM_11090 a0c084b958dea7a17267561e07ae8a76 205 SUPERFAMILY SSF159234 4 188 3.4E-27 T 13-10-2018 IPR035930 FomD-like superfamily RAM_11090 a0c084b958dea7a17267561e07ae8a76 205 Pfam PF04167 Protein of unknown function (DUF402) 75 138 4.5E-16 T 13-10-2018 IPR007295 Domain of unknown function DUF402 RAM_32860 cd60ee1737c8cdd5e14135456244d089 84 Pfam PF13564 DoxX-like family 9 84 1.8E-10 T 13-10-2018 IPR032808 DoxX family RAM_43850 53b48c6289f57efe4cab6db57c02f7aa 225 Gene3D G3DSA:3.20.20.380 7 225 1.7E-55 T 13-10-2018 IPR036822 Copper homeostasis (CutC) domain superfamily GO:0005507|GO:0055070 Reactome: R-HSA-936837 RAM_43850 53b48c6289f57efe4cab6db57c02f7aa 225 Pfam PF03932 CutC family 8 199 1.4E-39 T 13-10-2018 IPR023648 Copper homeostasis CutC domain GO:0005507|GO:0055070 Reactome: R-HSA-936837 RAM_43850 53b48c6289f57efe4cab6db57c02f7aa 225 SUPERFAMILY SSF110395 7 224 2.88E-51 T 13-10-2018 IPR036822 Copper homeostasis (CutC) domain superfamily GO:0005507|GO:0055070 Reactome: R-HSA-936837 RAM_46750 8b32748fd31942e6bcaf920dfa16342d 490 Gene3D G3DSA:3.50.50.60 1 169 1.3E-57 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_46750 8b32748fd31942e6bcaf920dfa16342d 490 PRINTS PR00419 Adrenodoxin reductase family signature 173 187 6.8E-6 T 13-10-2018 RAM_46750 8b32748fd31942e6bcaf920dfa16342d 490 PRINTS PR00419 Adrenodoxin reductase family signature 6 28 6.8E-6 T 13-10-2018 RAM_46750 8b32748fd31942e6bcaf920dfa16342d 490 PRINTS PR00419 Adrenodoxin reductase family signature 224 237 6.8E-6 T 13-10-2018 RAM_46750 8b32748fd31942e6bcaf920dfa16342d 490 Gene3D G3DSA:3.50.50.60 301 487 1.9E-37 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_46750 8b32748fd31942e6bcaf920dfa16342d 490 Pfam PF13738 Pyridine nucleotide-disulphide oxidoreductase 8 209 6.5E-14 T 13-10-2018 RAM_46750 8b32748fd31942e6bcaf920dfa16342d 490 SUPERFAMILY SSF51905 5 410 2.41E-55 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_03110 da5e8f6432e3da45547a46d0a11a33e2 390 Pfam PF11887 Cholesterol uptake porter CUP1 of Mce4, putative 162 283 1.7E-8 T 13-10-2018 IPR024516 Mammalian cell entry, C-terminal RAM_03110 da5e8f6432e3da45547a46d0a11a33e2 390 Pfam PF02470 MlaD protein 41 116 4.7E-17 T 13-10-2018 IPR003399 Mce/MlaD RAM_03110 da5e8f6432e3da45547a46d0a11a33e2 390 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 10 302 5.1E-70 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_21555 2e4099dd2e350551a2fe9dd46aa23035 158 SUPERFAMILY SSF88659 95 150 4.11E-11 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_21555 2e4099dd2e350551a2fe9dd46aa23035 158 Pfam PF08281 Sigma-70, region 4 96 147 5.2E-10 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_21555 2e4099dd2e350551a2fe9dd46aa23035 158 Gene3D G3DSA:1.10.1740.10 3 89 3.7E-16 T 13-10-2018 RAM_21555 2e4099dd2e350551a2fe9dd46aa23035 158 SUPERFAMILY SSF88946 6 83 3.85E-17 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_21555 2e4099dd2e350551a2fe9dd46aa23035 158 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 6 149 2.6E-18 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_21555 2e4099dd2e350551a2fe9dd46aa23035 158 Pfam PF04542 Sigma-70 region 2 10 75 1.9E-13 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_21555 2e4099dd2e350551a2fe9dd46aa23035 158 Gene3D G3DSA:1.10.10.10 90 151 3.2E-12 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_28125 c521ec4160ff967dccdc173e1f74f62e 180 Gene3D G3DSA:2.180.10.10 23 145 1.0E-17 T 13-10-2018 RAM_28125 c521ec4160ff967dccdc173e1f74f62e 180 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 67 145 1.9E-17 T 13-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 RAM_43385 cdb234d32315dfcaed8567305d9f57af 382 Gene3D G3DSA:1.10.580.10 37 349 1.6E-72 T 13-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 RAM_43385 cdb234d32315dfcaed8567305d9f57af 382 PRINTS PR00143 Citrate synthase signature 309 325 5.5E-24 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 RAM_43385 cdb234d32315dfcaed8567305d9f57af 382 PRINTS PR00143 Citrate synthase signature 175 190 5.5E-24 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 RAM_43385 cdb234d32315dfcaed8567305d9f57af 382 PRINTS PR00143 Citrate synthase signature 197 225 5.5E-24 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 RAM_43385 cdb234d32315dfcaed8567305d9f57af 382 PRINTS PR00143 Citrate synthase signature 250 270 5.5E-24 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 RAM_43385 cdb234d32315dfcaed8567305d9f57af 382 PRINTS PR00143 Citrate synthase signature 329 343 5.5E-24 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 RAM_43385 cdb234d32315dfcaed8567305d9f57af 382 ProSitePatterns PS00480 Citrate synthase signature. 257 269 - T 13-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 RAM_43385 cdb234d32315dfcaed8567305d9f57af 382 Gene3D G3DSA:1.10.230.10 223 323 1.6E-72 T 13-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain RAM_43385 cdb234d32315dfcaed8567305d9f57af 382 SUPERFAMILY SSF48256 19 369 1.7E-93 T 13-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 RAM_43385 cdb234d32315dfcaed8567305d9f57af 382 Pfam PF00285 Citrate synthase, C-terminal domain 22 358 3.4E-82 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 RAM_20915 8c58c71397de6c902700932b047eb683 249 SUPERFAMILY SSF49899 31 249 3.96E-58 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily RAM_20915 8c58c71397de6c902700932b047eb683 249 Pfam PF08787 Alginate lyase 31 248 7.1E-59 T 13-10-2018 IPR014895 Alginate lyase 2 RAM_20915 8c58c71397de6c902700932b047eb683 249 Gene3D G3DSA:2.60.120.200 22 249 5.0E-63 T 13-10-2018 RAM_41505 e931d2d28adc042d13bae6b16b4ae638 253 Pfam PF05239 PRC-barrel domain 6 75 2.6E-10 T 13-10-2018 IPR027275 PRC-barrel domain RAM_41505 e931d2d28adc042d13bae6b16b4ae638 253 Gene3D G3DSA:2.30.30.240 1 80 3.4E-9 T 13-10-2018 RAM_41505 e931d2d28adc042d13bae6b16b4ae638 253 Pfam PF09557 Domain of unknown function (DUF2382) 136 243 9.5E-31 T 13-10-2018 IPR019060 Domain of unknown function DUF2382 RAM_41505 e931d2d28adc042d13bae6b16b4ae638 253 SUPERFAMILY SSF50346 4 106 1.35E-21 T 13-10-2018 IPR011033 PRC-barrel-like superfamily RAM_41655 4ec35cf7e7853a4e52f9a745b76cad6e 406 Gene3D G3DSA:3.40.47.10 2 405 2.1E-130 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_41655 4ec35cf7e7853a4e52f9a745b76cad6e 406 SUPERFAMILY SSF53901 3 282 7.27E-65 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_41655 4ec35cf7e7853a4e52f9a745b76cad6e 406 SUPERFAMILY SSF53901 283 404 4.25E-43 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_41655 4ec35cf7e7853a4e52f9a745b76cad6e 406 Pfam PF00108 Thiolase, N-terminal domain 5 274 2.6E-56 T 13-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 RAM_41655 4ec35cf7e7853a4e52f9a745b76cad6e 406 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 403 1.4E-135 T 13-10-2018 IPR002155 Thiolase GO:0016747 RAM_41655 4ec35cf7e7853a4e52f9a745b76cad6e 406 PIRSF PIRSF000429 1 406 2.6E-126 T 13-10-2018 IPR002155 Thiolase GO:0016747 RAM_41655 4ec35cf7e7853a4e52f9a745b76cad6e 406 ProSitePatterns PS00737 Thiolases signature 2. 351 367 - T 13-10-2018 IPR020613 Thiolase, conserved site GO:0016747 RAM_41655 4ec35cf7e7853a4e52f9a745b76cad6e 406 Pfam PF02803 Thiolase, C-terminal domain 282 404 6.3E-48 T 13-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 RAM_23160 1505030efd71a9f9e515836e6f43ef03 202 Pfam PF00072 Response regulator receiver domain 6 116 4.9E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_23160 1505030efd71a9f9e515836e6f43ef03 202 Gene3D G3DSA:3.40.50.12740 3 201 5.8E-60 T 13-10-2018 RAM_23160 1505030efd71a9f9e515836e6f43ef03 202 SUPERFAMILY SSF52172 2 129 6.12E-32 T 13-10-2018 IPR011006 CheY-like superfamily RAM_23160 1505030efd71a9f9e515836e6f43ef03 202 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 156 172 5.8E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_23160 1505030efd71a9f9e515836e6f43ef03 202 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 142 156 5.8E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_23160 1505030efd71a9f9e515836e6f43ef03 202 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 172 184 5.8E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_23160 1505030efd71a9f9e515836e6f43ef03 202 Pfam PF00196 Bacterial regulatory proteins, luxR family 141 196 1.8E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_23160 1505030efd71a9f9e515836e6f43ef03 202 SUPERFAMILY SSF46894 127 202 1.46E-18 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_23160 1505030efd71a9f9e515836e6f43ef03 202 SMART SM00421 139 196 3.3E-18 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_23160 1505030efd71a9f9e515836e6f43ef03 202 SMART SM00448 3 116 1.3E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_04730 ed84174f4739a28f187afed644940cb9 195 ProSitePatterns PS01081 TetR-type HTH domain signature. 24 55 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RAM_04730 ed84174f4739a28f187afed644940cb9 195 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 55 4.9E-13 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_04730 ed84174f4739a28f187afed644940cb9 195 SUPERFAMILY SSF46689 10 75 8.51E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_04730 ed84174f4739a28f187afed644940cb9 195 Gene3D G3DSA:1.10.357.10 1 192 8.7E-47 T 13-10-2018 RAM_04730 ed84174f4739a28f187afed644940cb9 195 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 4.6E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_04730 ed84174f4739a28f187afed644940cb9 195 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 4.6E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_14980 d81e5856eaf9d178348f92005c75a61f 144 Gene3D G3DSA:3.30.300.20 2 143 4.0E-39 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta RAM_14980 d81e5856eaf9d178348f92005c75a61f 144 TIGRFAM TIGR03562 osmo_induc_OsmC: peroxiredoxin, OsmC subfamily 4 141 5.3E-47 T 13-10-2018 IPR019904 Peroxiredoxin OsmC GO:0004601|GO:0006979 KEGG: 00480+1.11.1.15 RAM_14980 d81e5856eaf9d178348f92005c75a61f 144 Pfam PF02566 OsmC-like protein 43 138 3.9E-19 T 13-10-2018 IPR003718 OsmC/Ohr family RAM_14980 d81e5856eaf9d178348f92005c75a61f 144 SUPERFAMILY SSF82784 4 135 2.09E-34 T 13-10-2018 IPR036102 OsmC/Ohr superfamily RAM_34590 550ba92a4f9709050676e22e3fb23d6e 196 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 62 5.4E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_34590 550ba92a4f9709050676e22e3fb23d6e 196 SUPERFAMILY SSF46689 8 76 1.9E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_34590 550ba92a4f9709050676e22e3fb23d6e 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 2.3E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_34590 550ba92a4f9709050676e22e3fb23d6e 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 2.3E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_34590 550ba92a4f9709050676e22e3fb23d6e 196 Gene3D G3DSA:1.10.357.10 3 194 1.1E-20 T 13-10-2018 RAM_34765 26b11dbd1df5890f1c50b619c2bac5d2 153 SMART SM00347 32 134 1.5E-14 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_34765 26b11dbd1df5890f1c50b619c2bac5d2 153 Gene3D G3DSA:1.10.10.10 8 147 6.6E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_34765 26b11dbd1df5890f1c50b619c2bac5d2 153 SUPERFAMILY SSF46785 12 142 2.35E-25 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_34765 26b11dbd1df5890f1c50b619c2bac5d2 153 PRINTS PR00598 Bacterial regulatory protein MarR family signature 94 110 6.9E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_34765 26b11dbd1df5890f1c50b619c2bac5d2 153 PRINTS PR00598 Bacterial regulatory protein MarR family signature 58 74 6.9E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_34765 26b11dbd1df5890f1c50b619c2bac5d2 153 PRINTS PR00598 Bacterial regulatory protein MarR family signature 75 90 6.9E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_34765 26b11dbd1df5890f1c50b619c2bac5d2 153 Pfam PF01047 MarR family 39 98 3.8E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_26650 2055fc2ea5e4a9e437cbd0887352e716 180 SUPERFAMILY SSF55729 1 171 1.29E-35 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_26650 2055fc2ea5e4a9e437cbd0887352e716 180 Gene3D G3DSA:3.40.630.30 3 176 1.2E-37 T 13-10-2018 RAM_26650 2055fc2ea5e4a9e437cbd0887352e716 180 Pfam PF13302 Acetyltransferase (GNAT) domain 9 142 1.5E-16 T 13-10-2018 IPR000182 GNAT domain RAM_02355 3a132e0731adb423ab59b2b7acad8fcb 289 PRINTS PR00069 Aldo-keto reductase signature 52 76 8.0E-18 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_02355 3a132e0731adb423ab59b2b7acad8fcb 289 PRINTS PR00069 Aldo-keto reductase signature 117 135 8.0E-18 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_02355 3a132e0731adb423ab59b2b7acad8fcb 289 PRINTS PR00069 Aldo-keto reductase signature 152 169 8.0E-18 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_02355 3a132e0731adb423ab59b2b7acad8fcb 289 PRINTS PR00069 Aldo-keto reductase signature 222 246 8.0E-18 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_02355 3a132e0731adb423ab59b2b7acad8fcb 289 PRINTS PR00069 Aldo-keto reductase signature 186 215 8.0E-18 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_02355 3a132e0731adb423ab59b2b7acad8fcb 289 Pfam PF00248 Aldo/keto reductase family 23 286 1.7E-44 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain RAM_02355 3a132e0731adb423ab59b2b7acad8fcb 289 Gene3D G3DSA:3.20.20.100 14 288 4.3E-68 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_02355 3a132e0731adb423ab59b2b7acad8fcb 289 SUPERFAMILY SSF51430 19 287 5.76E-62 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_41800 9111cdc19c7204007b3cf29e302b1fd3 382 TIGRFAM TIGR01167 LPXTG_anchor: LPXTG cell wall anchor domain 347 379 1.6E-4 T 13-10-2018 RAM_41800 9111cdc19c7204007b3cf29e302b1fd3 382 TIGRFAM TIGR03934 TQXA_dom: TQXA domain 110 163 3.6E-13 T 13-10-2018 IPR023849 Uncharacterised domain CHP03934, TQXA RAM_30710 0d1c2be0d2687451f1636e6b253e5a75 245 Pfam PF13803 Domain of unknown function (DUF4184) 2 230 2.7E-50 T 13-10-2018 IPR025238 Protein of unknown function DUF4184 RAM_37185 f9d26a1d3978cadc2864b3bee36aeed6 387 Gene3D G3DSA:1.20.1250.20 179 373 2.5E-27 T 13-10-2018 RAM_37185 f9d26a1d3978cadc2864b3bee36aeed6 387 SUPERFAMILY SSF103473 2 372 5.36E-71 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_37185 f9d26a1d3978cadc2864b3bee36aeed6 387 Gene3D G3DSA:1.20.1250.20 1 169 6.6E-37 T 13-10-2018 RAM_37185 f9d26a1d3978cadc2864b3bee36aeed6 387 Pfam PF07690 Major Facilitator Superfamily 7 335 3.1E-52 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_22990 89e1f1db9b7bd00d8358f200b527bf19 180 Pfam PF01522 Polysaccharide deacetylase 3 116 3.9E-32 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 RAM_22990 89e1f1db9b7bd00d8358f200b527bf19 180 SUPERFAMILY SSF88713 3 178 6.23E-57 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RAM_22990 89e1f1db9b7bd00d8358f200b527bf19 180 Gene3D G3DSA:3.20.20.370 1 179 2.4E-60 T 13-10-2018 RAM_31910 23025f42f74bc2bf46e955c026e7586e 286 Gene3D G3DSA:1.10.260.40 15 100 1.2E-7 T 13-10-2018 RAM_31910 23025f42f74bc2bf46e955c026e7586e 286 SMART SM00530 13 85 3.6E-6 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_31910 23025f42f74bc2bf46e955c026e7586e 286 SUPERFAMILY SSF47413 31 84 7.95E-7 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_31910 23025f42f74bc2bf46e955c026e7586e 286 Pfam PF13560 Helix-turn-helix domain 10 88 5.1E-15 T 13-10-2018 RAM_37040 851ab3024b0d767c82f9381ab4fda403 406 PRINTS PR00385 P450 superfamily signature 279 290 4.0E-5 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_37040 851ab3024b0d767c82f9381ab4fda403 406 PRINTS PR00385 P450 superfamily signature 355 366 4.0E-5 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_37040 851ab3024b0d767c82f9381ab4fda403 406 PRINTS PR00385 P450 superfamily signature 242 259 4.0E-5 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_37040 851ab3024b0d767c82f9381ab4fda403 406 PRINTS PR00385 P450 superfamily signature 346 355 4.0E-5 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_37040 851ab3024b0d767c82f9381ab4fda403 406 PRINTS PR00359 B-class P450 signature 297 324 7.5E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_37040 851ab3024b0d767c82f9381ab4fda403 406 PRINTS PR00359 B-class P450 signature 160 175 7.5E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_37040 851ab3024b0d767c82f9381ab4fda403 406 PRINTS PR00359 B-class P450 signature 346 355 7.5E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_37040 851ab3024b0d767c82f9381ab4fda403 406 PRINTS PR00359 B-class P450 signature 143 159 7.5E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_37040 851ab3024b0d767c82f9381ab4fda403 406 PRINTS PR00359 B-class P450 signature 197 219 7.5E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_37040 851ab3024b0d767c82f9381ab4fda403 406 PRINTS PR00359 B-class P450 signature 355 366 7.5E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_37040 851ab3024b0d767c82f9381ab4fda403 406 PRINTS PR00359 B-class P450 signature 279 290 7.5E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_37040 851ab3024b0d767c82f9381ab4fda403 406 PRINTS PR00359 B-class P450 signature 96 107 7.5E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_37040 851ab3024b0d767c82f9381ab4fda403 406 PRINTS PR00359 B-class P450 signature 325 340 7.5E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_37040 851ab3024b0d767c82f9381ab4fda403 406 Pfam PF00067 Cytochrome P450 210 372 8.6E-18 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_37040 851ab3024b0d767c82f9381ab4fda403 406 SUPERFAMILY SSF48264 27 406 5.24E-81 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_37040 851ab3024b0d767c82f9381ab4fda403 406 Gene3D G3DSA:1.10.630.10 19 406 1.1E-105 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_18135 b69df58c3cd776cea71fb375f512d9c5 284 SMART SM00530 9 81 2.5E-7 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_18135 b69df58c3cd776cea71fb375f512d9c5 284 Gene3D G3DSA:1.10.260.40 22 98 5.0E-8 T 13-10-2018 RAM_18135 b69df58c3cd776cea71fb375f512d9c5 284 Pfam PF13560 Helix-turn-helix domain 5 84 2.2E-15 T 13-10-2018 RAM_18135 b69df58c3cd776cea71fb375f512d9c5 284 SUPERFAMILY SSF47413 28 80 1.29E-6 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_02540 f39051bce9918f5da986e2053b7486cb 208 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 6 190 5.4E-36 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 RAM_02540 f39051bce9918f5da986e2053b7486cb 208 SMART SM00855 4 156 1.1E-15 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 RAM_02540 f39051bce9918f5da986e2053b7486cb 208 Gene3D G3DSA:3.40.50.1240 2 197 2.3E-29 T 13-10-2018 IPR029033 Histidine phosphatase superfamily RAM_02540 f39051bce9918f5da986e2053b7486cb 208 SUPERFAMILY SSF53254 3 194 4.44E-37 T 13-10-2018 IPR029033 Histidine phosphatase superfamily RAM_25625 a4910950ce77eaf1765e48fbb9934e16 137 ProDom PD009294 ASPARTATE 1-DECARBOXYLASE DECARBOXYLASE CHAIN LYASE ALPHA ALPHA- CONTAINS: PRECURSOR BETA 5 113 1.0E-35 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 RAM_25625 a4910950ce77eaf1765e48fbb9934e16 137 Gene3D G3DSA:2.40.40.20 1 122 1.7E-52 T 13-10-2018 RAM_25625 a4910950ce77eaf1765e48fbb9934e16 137 Hamap MF_00446 Aspartate 1-decarboxylase [panD]. 1 130 71.77 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 RAM_25625 a4910950ce77eaf1765e48fbb9934e16 137 SUPERFAMILY SSF50692 2 119 1.17E-47 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily RAM_25625 a4910950ce77eaf1765e48fbb9934e16 137 TIGRFAM TIGR00223 panD: aspartate 1-decarboxylase 2 117 2.7E-46 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 RAM_25625 a4910950ce77eaf1765e48fbb9934e16 137 Pfam PF02261 Aspartate decarboxylase 2 113 1.3E-50 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 RAM_25625 a4910950ce77eaf1765e48fbb9934e16 137 PIRSF PIRSF006246 1 135 2.0E-51 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 RAM_38255 242c2c8313cfdf407692b8e2ea4c8580 138 Pfam PF13463 Winged helix DNA-binding domain 37 97 4.3E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_38255 242c2c8313cfdf407692b8e2ea4c8580 138 SUPERFAMILY SSF46785 7 136 1.1E-27 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_38255 242c2c8313cfdf407692b8e2ea4c8580 138 SMART SM00347 24 124 2.5E-15 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_38255 242c2c8313cfdf407692b8e2ea4c8580 138 PRINTS PR00598 Bacterial regulatory protein MarR family signature 84 100 5.7E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_38255 242c2c8313cfdf407692b8e2ea4c8580 138 PRINTS PR00598 Bacterial regulatory protein MarR family signature 65 80 5.7E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_38255 242c2c8313cfdf407692b8e2ea4c8580 138 PRINTS PR00598 Bacterial regulatory protein MarR family signature 48 64 5.7E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_38255 242c2c8313cfdf407692b8e2ea4c8580 138 Gene3D G3DSA:1.10.10.10 1 137 2.9E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_31900 83a4bf3866489176fc80e830aefda1b0 207 Pfam PF00440 Bacterial regulatory proteins, tetR family 26 67 3.4E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_31900 83a4bf3866489176fc80e830aefda1b0 207 SUPERFAMILY SSF48498 94 191 9.78E-7 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_31900 83a4bf3866489176fc80e830aefda1b0 207 SUPERFAMILY SSF46689 13 96 3.85E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_31900 83a4bf3866489176fc80e830aefda1b0 207 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 26 39 6.8E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_31900 83a4bf3866489176fc80e830aefda1b0 207 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 47 70 6.8E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_31900 83a4bf3866489176fc80e830aefda1b0 207 Gene3D G3DSA:1.10.357.10 15 198 3.7E-48 T 13-10-2018 RAM_22370 ac80e26c1ad86a0af36a0fab098fd1c1 493 SUPERFAMILY SSF51126 175 485 5.03E-28 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor RAM_22370 ac80e26c1ad86a0af36a0fab098fd1c1 493 Gene3D G3DSA:2.60.40.290 35 139 1.2E-28 T 13-10-2018 IPR012291 CBM2, carbohydrate-binding domain superfamily GO:0004553|GO:0030247 RAM_22370 ac80e26c1ad86a0af36a0fab098fd1c1 493 Pfam PF00553 Cellulose binding domain 40 135 1.8E-24 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_22370 ac80e26c1ad86a0af36a0fab098fd1c1 493 SMART SM00710 303 331 900.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_22370 ac80e26c1ad86a0af36a0fab098fd1c1 493 SMART SM00710 279 301 240.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_22370 ac80e26c1ad86a0af36a0fab098fd1c1 493 SMART SM00710 373 409 5700.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_22370 ac80e26c1ad86a0af36a0fab098fd1c1 493 SMART SM00710 257 278 1400.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_22370 ac80e26c1ad86a0af36a0fab098fd1c1 493 SMART SM00637 38 135 1.9E-29 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_22370 ac80e26c1ad86a0af36a0fab098fd1c1 493 Gene3D G3DSA:2.160.20.10 157 490 9.4E-28 T 13-10-2018 IPR012334 Pectin lyase fold RAM_22370 ac80e26c1ad86a0af36a0fab098fd1c1 493 SUPERFAMILY SSF49384 34 137 3.77E-25 T 13-10-2018 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily GO:0030246 RAM_00180 a656f1f1fed9201431671e8012f4ecbb 266 SUPERFAMILY SSF144091 33 217 5.49E-40 T 13-10-2018 RAM_00180 a656f1f1fed9201431671e8012f4ecbb 266 Pfam PF01694 Rhomboid family 80 215 5.3E-30 T 13-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 RAM_00180 a656f1f1fed9201431671e8012f4ecbb 266 Gene3D G3DSA:1.20.1540.10 28 219 2.9E-37 T 13-10-2018 IPR035952 Rhomboid-like superfamily RAM_04140 e67ae7349b6abe70231ecf177be8e4e6 162 Pfam PF00583 Acetyltransferase (GNAT) family 34 130 1.7E-13 T 13-10-2018 IPR000182 GNAT domain RAM_04140 e67ae7349b6abe70231ecf177be8e4e6 162 SUPERFAMILY SSF55729 5 137 9.66E-25 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_04140 e67ae7349b6abe70231ecf177be8e4e6 162 Gene3D G3DSA:3.40.630.30 1 136 9.4E-23 T 13-10-2018 RAM_39315 e8425031fc54f3a9d914fb17102feff2 205 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 59 7.9E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_39315 e8425031fc54f3a9d914fb17102feff2 205 SUPERFAMILY SSF48498 84 193 2.59E-15 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_39315 e8425031fc54f3a9d914fb17102feff2 205 Pfam PF13977 BetI-type transcriptional repressor, C-terminal 86 192 2.9E-15 T 13-10-2018 IPR039538 BetI-type transcriptional repressor, C-terminal RAM_39315 e8425031fc54f3a9d914fb17102feff2 205 SUPERFAMILY SSF46689 2 82 1.13E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_39315 e8425031fc54f3a9d914fb17102feff2 205 Gene3D G3DSA:1.10.357.10 2 196 1.7E-35 T 13-10-2018 RAM_15910 1e4d50c1fa3bf897a382783b78a30786 256 Gene3D G3DSA:1.10.12.10 198 254 5.2E-5 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal RAM_15910 1e4d50c1fa3bf897a382783b78a30786 256 Pfam PF00378 Enoyl-CoA hydratase/isomerase 11 252 3.4E-42 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RAM_15910 1e4d50c1fa3bf897a382783b78a30786 256 SUPERFAMILY SSF52096 3 253 1.56E-66 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_15910 1e4d50c1fa3bf897a382783b78a30786 256 Gene3D G3DSA:3.90.226.10 1 196 1.5E-58 T 13-10-2018 RAM_03825 537fa528c280fedf271e13a1a97a8392 383 Gene3D G3DSA:3.40.50.2000 197 353 2.1E-116 T 13-10-2018 RAM_03825 537fa528c280fedf271e13a1a97a8392 383 Gene3D G3DSA:3.40.50.2000 5 358 2.1E-116 T 13-10-2018 RAM_03825 537fa528c280fedf271e13a1a97a8392 383 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 22 366 3.1E-94 T 13-10-2018 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 RAM_03825 537fa528c280fedf271e13a1a97a8392 383 SUPERFAMILY SSF53756 3 372 4.76E-99 T 13-10-2018 RAM_03825 537fa528c280fedf271e13a1a97a8392 383 TIGRFAM TIGR00236 wecB: UDP-N-acetylglucosamine 2-epimerase 2 360 6.4E-108 T 13-10-2018 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 RAM_36405 736774546052553d5c640a06874ec508 450 Gene3D G3DSA:3.40.50.300 179 393 4.5E-50 T 13-10-2018 RAM_36405 736774546052553d5c640a06874ec508 450 Pfam PF00437 Type II/IV secretion system protein 86 371 2.1E-36 T 13-10-2018 IPR001482 Type II/IV secretion system protein RAM_36405 736774546052553d5c640a06874ec508 450 SUPERFAMILY SSF52540 65 385 4.71E-31 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_36405 736774546052553d5c640a06874ec508 450 Gene3D G3DSA:3.30.450.380 9 178 2.7E-17 T 13-10-2018 RAM_02260 c7c60fa4c4fd64383dd283de07b3056f 156 Pfam PF01047 MarR family 41 97 1.9E-14 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_02260 c7c60fa4c4fd64383dd283de07b3056f 156 PRINTS PR00598 Bacterial regulatory protein MarR family signature 54 70 5.5E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_02260 c7c60fa4c4fd64383dd283de07b3056f 156 PRINTS PR00598 Bacterial regulatory protein MarR family signature 122 142 5.5E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_02260 c7c60fa4c4fd64383dd283de07b3056f 156 PRINTS PR00598 Bacterial regulatory protein MarR family signature 71 86 5.5E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_02260 c7c60fa4c4fd64383dd283de07b3056f 156 Gene3D G3DSA:1.10.10.10 2 144 1.1E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_02260 c7c60fa4c4fd64383dd283de07b3056f 156 SMART SM00347 30 132 9.3E-17 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_02260 c7c60fa4c4fd64383dd283de07b3056f 156 SUPERFAMILY SSF46785 16 143 1.7E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_12410 74962aeb1c0932bc0f629dda1144bfef 353 SUPERFAMILY SSF47413 4 63 1.04E-15 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_12410 74962aeb1c0932bc0f629dda1144bfef 353 Gene3D G3DSA:3.40.50.2300 60 325 5.4E-71 T 13-10-2018 RAM_12410 74962aeb1c0932bc0f629dda1144bfef 353 Gene3D G3DSA:3.40.50.2300 179 308 5.4E-71 T 13-10-2018 RAM_12410 74962aeb1c0932bc0f629dda1144bfef 353 Pfam PF00356 Bacterial regulatory proteins, lacI family 9 52 2.3E-15 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_12410 74962aeb1c0932bc0f629dda1144bfef 353 SUPERFAMILY SSF53822 77 348 5.89E-69 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_12410 74962aeb1c0932bc0f629dda1144bfef 353 SMART SM00354 5 74 2.8E-21 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_12410 74962aeb1c0932bc0f629dda1144bfef 353 Pfam PF13377 Periplasmic binding protein-like domain 187 347 6.0E-44 T 13-10-2018 RAM_12410 74962aeb1c0932bc0f629dda1144bfef 353 Gene3D G3DSA:1.10.260.40 1 59 1.4E-20 T 13-10-2018 RAM_06985 516666014b81acc58f639764643a1a52 268 SUPERFAMILY SSF52540 14 259 3.28E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_06985 516666014b81acc58f639764643a1a52 268 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 237 259 8.5E-10 T 13-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RAM_06985 516666014b81acc58f639764643a1a52 268 Pfam PF00005 ABC transporter 29 189 4.8E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_06985 516666014b81acc58f639764643a1a52 268 SMART SM00382 38 236 2.7E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_06985 516666014b81acc58f639764643a1a52 268 Gene3D G3DSA:3.40.50.300 14 263 1.1E-61 T 13-10-2018 RAM_25700 fdf52638302fb5134e3b541aa0bcb388 261 SUPERFAMILY SSF52096 5 257 1.14E-56 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_25700 fdf52638302fb5134e3b541aa0bcb388 261 Gene3D G3DSA:3.90.226.10 2 261 2.7E-59 T 13-10-2018 RAM_25700 fdf52638302fb5134e3b541aa0bcb388 261 Pfam PF00378 Enoyl-CoA hydratase/isomerase 12 249 3.7E-31 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RAM_14870 30fe69a80a08c14a0182c485af217096 192 SUPERFAMILY SSF46689 2 74 3.33E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_14870 30fe69a80a08c14a0182c485af217096 192 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 58 1.2E-13 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_14870 30fe69a80a08c14a0182c485af217096 192 Gene3D G3DSA:1.10.357.10 5 181 5.9E-21 T 13-10-2018 RAM_14870 30fe69a80a08c14a0182c485af217096 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 6.7E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_14870 30fe69a80a08c14a0182c485af217096 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 6.7E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_12000 5f2499716f15c0c9ae93123837344526 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 1.6E-35 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_12000 5f2499716f15c0c9ae93123837344526 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 1.6E-35 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_12000 5f2499716f15c0c9ae93123837344526 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 206 226 1.6E-35 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_12000 5f2499716f15c0c9ae93123837344526 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 1.6E-35 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_12000 5f2499716f15c0c9ae93123837344526 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 1.6E-35 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_12000 5f2499716f15c0c9ae93123837344526 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 1.6E-35 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_12000 5f2499716f15c0c9ae93123837344526 245 Gene3D G3DSA:3.40.50.720 2 243 1.4E-68 T 13-10-2018 RAM_12000 5f2499716f15c0c9ae93123837344526 245 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 8 241 1.6E-50 T 13-10-2018 RAM_12000 5f2499716f15c0c9ae93123837344526 245 SUPERFAMILY SSF51735 3 242 6.03E-70 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_01345 8e4c0947cbc233031745abc9845dfc2b 329 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 6 322 1.6E-101 T 13-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 RAM_01345 8e4c0947cbc233031745abc9845dfc2b 329 Gene3D G3DSA:3.40.47.10 4 327 2.2E-113 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_01345 8e4c0947cbc233031745abc9845dfc2b 329 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 4 322 62.378 T 13-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 RAM_01345 8e4c0947cbc233031745abc9845dfc2b 329 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 104 184 9.2E-28 T 13-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 RAM_01345 8e4c0947cbc233031745abc9845dfc2b 329 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 233 322 5.4E-35 T 13-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 RAM_01345 8e4c0947cbc233031745abc9845dfc2b 329 SUPERFAMILY SSF53901 6 323 2.34E-60 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_15505 95626d360a036357f33d8d8e19f923ac 382 SUPERFAMILY SSF50129 2 188 2.43E-58 T 13-10-2018 IPR011032 GroES-like superfamily RAM_15505 95626d360a036357f33d8d8e19f923ac 382 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 139 3.9E-28 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_15505 95626d360a036357f33d8d8e19f923ac 382 SUPERFAMILY SSF51735 154 341 5.73E-58 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_15505 95626d360a036357f33d8d8e19f923ac 382 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 59 73 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 RAM_15505 95626d360a036357f33d8d8e19f923ac 382 Gene3D G3DSA:3.40.50.720 168 339 9.1E-121 T 13-10-2018 RAM_15505 95626d360a036357f33d8d8e19f923ac 382 Pfam PF00107 Zinc-binding dehydrogenase 188 259 3.3E-11 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RAM_15505 95626d360a036357f33d8d8e19f923ac 382 Gene3D G3DSA:3.90.180.10 4 366 9.1E-121 T 13-10-2018 RAM_19520 3b92f96dcf4a92fbabf4dab4d1a49d6b 371 SUPERFAMILY SSF47203 222 369 6.28E-41 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_19520 3b92f96dcf4a92fbabf4dab4d1a49d6b 371 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 221 369 2.8E-32 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_19520 3b92f96dcf4a92fbabf4dab4d1a49d6b 371 Gene3D G3DSA:1.20.140.10 224 369 2.5E-41 T 13-10-2018 RAM_19520 3b92f96dcf4a92fbabf4dab4d1a49d6b 371 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 118 1.3E-19 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_19520 3b92f96dcf4a92fbabf4dab4d1a49d6b 371 Gene3D G3DSA:2.40.110.10 122 223 1.5E-13 T 13-10-2018 RAM_19520 3b92f96dcf4a92fbabf4dab4d1a49d6b 371 SUPERFAMILY SSF56645 2 204 4.71E-38 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_19520 3b92f96dcf4a92fbabf4dab4d1a49d6b 371 Gene3D G3DSA:1.10.540.10 2 121 9.4E-31 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_33680 290a934bbb1fd89ab2621d415b4a7d31 352 Pfam PF13515 Fusaric acid resistance protein-like 27 151 3.2E-12 T 13-10-2018 RAM_00790 f57ed84a98d3ebb5ed31c54da63c37db 602 SUPERFAMILY SSF53850 53 402 6.25E-17 T 13-10-2018 RAM_00790 f57ed84a98d3ebb5ed31c54da63c37db 602 Pfam PF00092 von Willebrand factor type A domain 410 595 3.7E-15 T 13-10-2018 IPR002035 von Willebrand factor, type A RAM_00790 f57ed84a98d3ebb5ed31c54da63c37db 602 Pfam PF13531 Bacterial extracellular solute-binding protein 54 362 9.0E-41 T 13-10-2018 RAM_00790 f57ed84a98d3ebb5ed31c54da63c37db 602 SUPERFAMILY SSF53300 409 600 3.56E-25 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RAM_00790 f57ed84a98d3ebb5ed31c54da63c37db 602 Gene3D G3DSA:3.40.50.410 408 601 6.1E-36 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RAM_00790 f57ed84a98d3ebb5ed31c54da63c37db 602 SMART SM00327 408 595 2.9E-20 T 13-10-2018 IPR002035 von Willebrand factor, type A RAM_05990 13161c50feb27fcc4d056f29ebe15428 222 Gene3D G3DSA:1.20.1260.10 21 165 1.3E-5 T 13-10-2018 IPR012347 Ferritin-like RAM_05990 13161c50feb27fcc4d056f29ebe15428 222 Pfam PF13628 Domain of unknown function (DUF4142) 31 164 1.8E-17 T 13-10-2018 IPR025419 Domain of unknown function DUF4142 RAM_17830 6492b172e0354a0fe21cbf6778b908c6 190 SUPERFAMILY SSF54593 3 134 1.06E-19 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_17830 6492b172e0354a0fe21cbf6778b908c6 190 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 127 4.2E-5 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RAM_17830 6492b172e0354a0fe21cbf6778b908c6 190 Gene3D G3DSA:3.10.180.10 3 131 9.3E-21 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_46765 9f5b1d06fa60f9fbed24cf5260a3d8f7 98 Gene3D G3DSA:3.10.20.30 26 97 5.4E-12 T 13-10-2018 IPR012675 Beta-grasp domain superfamily RAM_46765 9f5b1d06fa60f9fbed24cf5260a3d8f7 98 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 39 77 3.4E-7 T 13-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RAM_46765 9f5b1d06fa60f9fbed24cf5260a3d8f7 98 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 67 75 - T 13-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RAM_46765 9f5b1d06fa60f9fbed24cf5260a3d8f7 98 SUPERFAMILY SSF54292 14 83 8.13E-17 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RAM_13930 45a05f169f8425e53ece68a47d7a52c4 362 SUPERFAMILY SSF55920 134 362 6.28E-73 T 13-10-2018 IPR036005 Creatinase/aminopeptidase-like RAM_13930 45a05f169f8425e53ece68a47d7a52c4 362 Gene3D G3DSA:3.40.350.10 6 134 1.2E-27 T 13-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal RAM_13930 45a05f169f8425e53ece68a47d7a52c4 362 Pfam PF01321 Creatinase/Prolidase N-terminal domain 8 134 2.7E-23 T 13-10-2018 IPR000587 Creatinase, N-terminal GO:0016787 RAM_13930 45a05f169f8425e53ece68a47d7a52c4 362 Gene3D G3DSA:3.90.230.10 135 362 6.8E-78 T 13-10-2018 RAM_13930 45a05f169f8425e53ece68a47d7a52c4 362 SUPERFAMILY SSF53092 7 132 5.62E-22 T 13-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal RAM_13930 45a05f169f8425e53ece68a47d7a52c4 362 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 292 304 - T 13-10-2018 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site RAM_13930 45a05f169f8425e53ece68a47d7a52c4 362 PRINTS PR00599 Methionine aminopeptidase-1 signature 216 232 1.8E-5 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 RAM_13930 45a05f169f8425e53ece68a47d7a52c4 362 PRINTS PR00599 Methionine aminopeptidase-1 signature 314 326 1.8E-5 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 RAM_13930 45a05f169f8425e53ece68a47d7a52c4 362 Pfam PF00557 Metallopeptidase family M24 141 345 1.6E-62 T 13-10-2018 IPR000994 Peptidase M24 RAM_15370 8b0578af3f503b9cd3222e2109c1e6bc 144 SUPERFAMILY SSF50249 6 133 3.18E-40 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_15370 8b0578af3f503b9cd3222e2109c1e6bc 144 Gene3D G3DSA:2.40.50.140 1 120 1.1E-41 T 13-10-2018 RAM_15370 8b0578af3f503b9cd3222e2109c1e6bc 144 Pfam PF00436 Single-strand binding protein family 6 106 1.5E-27 T 13-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 RAM_15370 8b0578af3f503b9cd3222e2109c1e6bc 144 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 4 123 3.4E-30 T 13-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 RAM_15370 8b0578af3f503b9cd3222e2109c1e6bc 144 Hamap MF_00984 Single-stranded DNA-binding protein. 4 113 29.737 T 13-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 RAM_28035 54155d3d155df9052253cecb53889506 402 SUPERFAMILY SSF53756 2 398 3.14E-83 T 13-10-2018 RAM_28035 54155d3d155df9052253cecb53889506 402 Gene3D G3DSA:3.40.50.2000 2 218 2.8E-113 T 13-10-2018 RAM_28035 54155d3d155df9052253cecb53889506 402 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 3 125 7.8E-7 T 13-10-2018 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RAM_28035 54155d3d155df9052253cecb53889506 402 Gene3D G3DSA:3.40.50.2000 219 385 2.8E-113 T 13-10-2018 RAM_23415 07f462c8c2f7311cddda44fda60eea48 462 Gene3D G3DSA:1.20.1740.10 11 459 3.8E-58 T 13-10-2018 RAM_23415 07f462c8c2f7311cddda44fda60eea48 462 Pfam PF00324 Amino acid permease 22 446 1.3E-113 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 RAM_23415 07f462c8c2f7311cddda44fda60eea48 462 PIRSF PIRSF006060 5 460 1.4E-63 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RAM_10860 bf06a3d9e65f2896f03ec9485240c42e 274 Pfam PF12146 Serine aminopeptidase, S33 29 145 1.6E-13 T 13-10-2018 IPR022742 Serine aminopeptidase, S33 RAM_10860 bf06a3d9e65f2896f03ec9485240c42e 274 Gene3D G3DSA:3.40.50.1820 1 272 2.5E-47 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_10860 bf06a3d9e65f2896f03ec9485240c42e 274 SUPERFAMILY SSF53474 8 270 5.45E-42 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_16950 19ecb22c9b22957016a000490bdd83d7 199 SUPERFAMILY SSF55961 48 198 1.27E-26 T 13-10-2018 RAM_16950 19ecb22c9b22957016a000490bdd83d7 199 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 51 197 7.0E-17 T 13-10-2018 IPR019587 Polyketide cyclase/dehydrase RAM_16950 19ecb22c9b22957016a000490bdd83d7 199 Gene3D G3DSA:3.30.530.20 44 199 2.1E-27 T 13-10-2018 IPR023393 START-like domain superfamily RAM_25310 c5fcc41a0c28a53126ae4520a083db39 193 SUPERFAMILY SSF46689 1 74 1.95E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_25310 c5fcc41a0c28a53126ae4520a083db39 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 3.2E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_25310 c5fcc41a0c28a53126ae4520a083db39 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 3.2E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_25310 c5fcc41a0c28a53126ae4520a083db39 193 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 62 1.6E-14 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_25310 c5fcc41a0c28a53126ae4520a083db39 193 Gene3D G3DSA:1.10.357.10 3 189 7.0E-57 T 13-10-2018 RAM_25310 c5fcc41a0c28a53126ae4520a083db39 193 SUPERFAMILY SSF48498 77 189 3.86E-9 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_25310 c5fcc41a0c28a53126ae4520a083db39 193 ProSitePatterns PS01081 TetR-type HTH domain signature. 28 58 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RAM_07705 3f24bb4f1bd843fa624c525bb18abc04 339 Gene3D G3DSA:1.10.600.10 11 339 2.2E-103 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily RAM_07705 3f24bb4f1bd843fa624c525bb18abc04 339 Pfam PF00348 Polyprenyl synthetase 60 286 1.2E-52 T 13-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 RAM_07705 3f24bb4f1bd843fa624c525bb18abc04 339 SUPERFAMILY SSF48576 39 338 2.72E-73 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily RAM_07705 3f24bb4f1bd843fa624c525bb18abc04 339 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 99 113 - T 13-10-2018 IPR033749 Polyprenyl synthetase, conserved site RAM_41485 0529f72b4248a5285d140c1317259357 252 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 22 251 3.6E-63 T 13-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 RAM_41485 0529f72b4248a5285d140c1317259357 252 SUPERFAMILY SSF64005 19 246 1.83E-72 T 13-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 RAM_41485 0529f72b4248a5285d140c1317259357 252 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 21 252 35.022 T 13-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 RAM_41485 0529f72b4248a5285d140c1317259357 252 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 197 214 - T 13-10-2018 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 Reactome: R-HSA-446199|Reactome: R-HSA-4755609 RAM_41485 0529f72b4248a5285d140c1317259357 252 Pfam PF01255 Putative undecaprenyl diphosphate synthase 29 251 2.8E-71 T 13-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 RAM_41485 0529f72b4248a5285d140c1317259357 252 Gene3D G3DSA:3.40.1180.10 10 252 1.7E-84 T 13-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 RAM_40480 fc042fc5469f28ecd59e6840b3c57110 487 Gene3D G3DSA:3.40.605.10 19 481 2.3E-169 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RAM_40480 fc042fc5469f28ecd59e6840b3c57110 487 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 259 266 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 RAM_40480 fc042fc5469f28ecd59e6840b3c57110 487 SUPERFAMILY SSF53720 16 484 5.89E-162 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RAM_40480 fc042fc5469f28ecd59e6840b3c57110 487 Gene3D G3DSA:3.40.309.10 264 453 2.3E-169 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RAM_40480 fc042fc5469f28ecd59e6840b3c57110 487 Pfam PF00171 Aldehyde dehydrogenase family 23 482 1.5E-163 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RAM_30820 08cbf9fbda991537a2daf6a85ab7202d 323 Gene3D G3DSA:3.40.50.300 66 323 4.4E-83 T 13-10-2018 RAM_30820 08cbf9fbda991537a2daf6a85ab7202d 323 SUPERFAMILY SSF52540 72 322 1.77E-64 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_30820 08cbf9fbda991537a2daf6a85ab7202d 323 Pfam PF13614 AAA domain 73 249 4.8E-62 T 13-10-2018 IPR025669 AAA domain RAM_48015 ea92dc4c1bde10cc9af065f6a6ea1761 384 SUPERFAMILY SSF81665 12 252 6.93E-5 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 RAM_48015 ea92dc4c1bde10cc9af065f6a6ea1761 384 Pfam PF02096 60Kd inner membrane protein 32 259 2.3E-52 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 RAM_48015 ea92dc4c1bde10cc9af065f6a6ea1761 384 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 31 258 1.6E-55 T 13-10-2018 IPR028055 Membrane insertase YidC/Oxa1, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_08555 907315e3fddc8cee34950886e26d2b4a 173 Pfam PF10756 Bacterial PH domain 85 150 2.4E-11 T 13-10-2018 IPR019692 Protein of unknown function DUF2581 RAM_08555 907315e3fddc8cee34950886e26d2b4a 173 ProDom PD072817 ANTIGEN WEIGHT MOLECULAR LOW CFP-6 CGL1269 SEQUENCING DIRECT 47 155 1.0E-14 T 13-10-2018 IPR020535 Low molecular weight antigen Cfp6 RAM_21805 289f59b3aca3c1376261755deb1fbd62 331 Pfam PF01384 Phosphate transporter family 21 320 3.7E-82 T 13-10-2018 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 RAM_11835 5552e84675f471ea0a66d0cbf6659a9a 229 SUPERFAMILY SSF160387 84 201 8.63E-17 T 13-10-2018 RAM_11835 5552e84675f471ea0a66d0cbf6659a9a 229 Pfam PF03243 Alkylmercury lyase 77 193 1.3E-16 T 13-10-2018 IPR004927 Alkylmercury lyase GO:0018836|GO:0046413 RAM_11835 5552e84675f471ea0a66d0cbf6659a9a 229 Gene3D G3DSA:2.40.10.490 5 192 7.0E-23 T 13-10-2018 RAM_09355 dfb8215b29f986fb28dc0984a3cee1b1 195 SUPERFAMILY SSF88946 8 121 6.28E-16 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_09355 dfb8215b29f986fb28dc0984a3cee1b1 195 Gene3D G3DSA:1.10.10.10 119 193 5.4E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_09355 dfb8215b29f986fb28dc0984a3cee1b1 195 Pfam PF08281 Sigma-70, region 4 135 186 9.3E-12 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_09355 dfb8215b29f986fb28dc0984a3cee1b1 195 Gene3D G3DSA:1.10.1740.10 6 99 3.2E-12 T 13-10-2018 RAM_09355 dfb8215b29f986fb28dc0984a3cee1b1 195 Pfam PF04542 Sigma-70 region 2 33 101 5.8E-10 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_09355 dfb8215b29f986fb28dc0984a3cee1b1 195 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 27 188 3.2E-22 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_09355 dfb8215b29f986fb28dc0984a3cee1b1 195 SUPERFAMILY SSF88659 120 192 2.62E-14 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_18875 bb65114344f852c0c66aa340a36251ae 308 Pfam PF00892 EamA-like transporter family 157 289 4.1E-19 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RAM_18875 bb65114344f852c0c66aa340a36251ae 308 Pfam PF00892 EamA-like transporter family 8 146 3.3E-13 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RAM_18875 bb65114344f852c0c66aa340a36251ae 308 SUPERFAMILY SSF103481 42 149 4.32E-8 T 13-10-2018 RAM_18875 bb65114344f852c0c66aa340a36251ae 308 SUPERFAMILY SSF103481 194 294 2.48E-12 T 13-10-2018 RAM_43625 228a9c26ea0143858e58709fd54b0c51 71 Pfam PF11211 Protein of unknown function (DUF2997) 6 51 3.4E-16 T 13-10-2018 IPR021375 Protein of unknown function DUF2997 RAM_04495 5d0e9781cee0c6360246f742d09185c3 477 Gene3D G3DSA:3.40.309.10 261 450 7.7E-176 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RAM_04495 5d0e9781cee0c6360246f742d09185c3 477 Gene3D G3DSA:3.40.605.10 26 476 7.7E-176 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RAM_04495 5d0e9781cee0c6360246f742d09185c3 477 Pfam PF00171 Aldehyde dehydrogenase family 30 477 8.7E-168 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RAM_04495 5d0e9781cee0c6360246f742d09185c3 477 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 256 263 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 RAM_04495 5d0e9781cee0c6360246f742d09185c3 477 SUPERFAMILY SSF53720 20 477 1.96E-163 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RAM_26155 1b99aa3efa58a3e6812b4a7b28371a42 289 SUPERFAMILY SSF53474 10 283 1.22E-46 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_26155 1b99aa3efa58a3e6812b4a7b28371a42 289 Gene3D G3DSA:3.40.50.1820 6 287 1.2E-47 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_26155 1b99aa3efa58a3e6812b4a7b28371a42 289 Pfam PF12697 Alpha/beta hydrolase family 32 278 7.6E-14 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_26155 1b99aa3efa58a3e6812b4a7b28371a42 289 PRINTS PR00111 Alpha/beta hydrolase fold signature 102 115 3.5E-5 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_26155 1b99aa3efa58a3e6812b4a7b28371a42 289 PRINTS PR00111 Alpha/beta hydrolase fold signature 116 129 3.5E-5 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_26155 1b99aa3efa58a3e6812b4a7b28371a42 289 PRINTS PR00111 Alpha/beta hydrolase fold signature 230 244 3.5E-5 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_37665 8bfd33a7d35787bddb09520143b1cfd2 134 SUPERFAMILY SSF55961 1 123 8.61E-16 T 13-10-2018 RAM_37665 8bfd33a7d35787bddb09520143b1cfd2 134 Gene3D G3DSA:3.30.530.20 1 124 5.8E-35 T 13-10-2018 IPR023393 START-like domain superfamily RAM_37665 8bfd33a7d35787bddb09520143b1cfd2 134 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 1 123 1.2E-10 T 13-10-2018 IPR019587 Polyketide cyclase/dehydrase RAM_16620 3d9230c1381c5cd0cccc60c2515b9074 328 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 201 264 1.6E-12 T 13-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RAM_16620 3d9230c1381c5cd0cccc60c2515b9074 328 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 21 195 4.6E-47 T 13-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RAM_16620 3d9230c1381c5cd0cccc60c2515b9074 328 SUPERFAMILY SSF51735 19 197 7.24E-50 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_16620 3d9230c1381c5cd0cccc60c2515b9074 328 SUPERFAMILY SSF48179 201 290 1.02E-13 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RAM_16620 3d9230c1381c5cd0cccc60c2515b9074 328 Gene3D G3DSA:3.40.50.720 16 201 9.9E-56 T 13-10-2018 RAM_16620 3d9230c1381c5cd0cccc60c2515b9074 328 Gene3D G3DSA:1.10.1040.10 202 325 2.3E-32 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RAM_04085 b10daf2f1ac722c4385e37bb312830e8 255 Pfam PF01551 Peptidase family M23 149 244 5.4E-32 T 13-10-2018 IPR016047 Peptidase M23 RAM_04085 b10daf2f1ac722c4385e37bb312830e8 255 SUPERFAMILY SSF51261 121 248 9.94E-50 T 13-10-2018 IPR011055 Duplicated hybrid motif RAM_04085 b10daf2f1ac722c4385e37bb312830e8 255 Gene3D G3DSA:2.70.70.10 87 251 1.7E-47 T 13-10-2018 IPR011055 Duplicated hybrid motif RAM_44140 b957ffbfc525ebcb840c492c076e4f39 119 Pfam PF01638 HxlR-like helix-turn-helix 20 106 1.7E-27 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type RAM_44140 b957ffbfc525ebcb840c492c076e4f39 119 SUPERFAMILY SSF46785 9 117 2.55E-33 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_44140 b957ffbfc525ebcb840c492c076e4f39 119 Gene3D G3DSA:1.10.10.10 3 119 1.9E-41 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_27430 0df21b67d69a72c8dd2bcb87c0fb49c6 268 Pfam PF10503 Esterase PHB depolymerase 33 162 1.1E-5 T 13-10-2018 IPR010126 Esterase, PHB depolymerase GO:0005576|GO:0016787 RAM_27430 0df21b67d69a72c8dd2bcb87c0fb49c6 268 SUPERFAMILY SSF53474 10 256 5.54E-25 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_27430 0df21b67d69a72c8dd2bcb87c0fb49c6 268 Gene3D G3DSA:3.40.50.1820 18 264 7.7E-53 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_25515 464d8e361751d232f9dc7f9fff111509 471 Gene3D G3DSA:3.90.1150.10 4 383 2.3E-96 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_25515 464d8e361751d232f9dc7f9fff111509 471 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 40 333 9.8E-16 T 13-10-2018 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 RAM_25515 464d8e361751d232f9dc7f9fff111509 471 SUPERFAMILY SSF53383 4 375 2.2E-83 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_25515 464d8e361751d232f9dc7f9fff111509 471 Gene3D G3DSA:3.40.640.10 39 292 2.3E-96 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_02165 fcc2b98b73037eab48477a10dc6da653 153 Pfam PF11706 CGNR zinc finger 107 150 8.0E-19 T 13-10-2018 IPR021005 Zinc finger, CGNR RAM_02165 fcc2b98b73037eab48477a10dc6da653 153 Gene3D G3DSA:1.10.3300.10 3 152 5.7E-22 T 13-10-2018 IPR023286 ABATE domain superfamily RAM_02165 fcc2b98b73037eab48477a10dc6da653 153 SUPERFAMILY SSF160904 3 149 3.92E-32 T 13-10-2018 RAM_02165 fcc2b98b73037eab48477a10dc6da653 153 Pfam PF07336 Putative stress-induced transcription regulator 7 93 1.7E-8 T 13-10-2018 IPR010852 Putative stress-induced transcription regulator RAM_45115 a7b46ef71958de0191ce05203a39cfe4 263 Pfam PF14011 EspG family 53 250 4.9E-7 T 13-10-2018 IPR025734 EspG family RAM_04500 c1d2c052bab7535aca1e02efb47c0e06 324 Gene3D G3DSA:3.20.20.70 55 308 2.8E-87 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_04500 c1d2c052bab7535aca1e02efb47c0e06 324 SMART SM01133 65 305 3.4E-70 T 13-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 RAM_04500 c1d2c052bab7535aca1e02efb47c0e06 324 TIGRFAM TIGR00126 deoC: deoxyribose-phosphate aldolase 67 281 1.8E-53 T 13-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 RAM_04500 c1d2c052bab7535aca1e02efb47c0e06 324 PIRSF PIRSF001357 59 314 3.7E-77 T 13-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 RAM_04500 c1d2c052bab7535aca1e02efb47c0e06 324 SUPERFAMILY SSF51569 63 304 4.19E-73 T 13-10-2018 RAM_04500 c1d2c052bab7535aca1e02efb47c0e06 324 Pfam PF01791 DeoC/LacD family aldolase 65 302 2.3E-26 T 13-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 RAM_37675 e9d1486e0953a5c087afecff13960900 104 Pfam PF12840 Helix-turn-helix domain 18 79 3.7E-12 T 13-10-2018 RAM_37675 e9d1486e0953a5c087afecff13960900 104 Gene3D G3DSA:1.10.10.10 11 103 6.4E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_37675 e9d1486e0953a5c087afecff13960900 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 55 70 1.8E-7 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_37675 e9d1486e0953a5c087afecff13960900 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 19 34 1.8E-7 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_37675 e9d1486e0953a5c087afecff13960900 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 70 85 1.8E-7 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_37675 e9d1486e0953a5c087afecff13960900 104 SUPERFAMILY SSF46785 4 98 1.68E-15 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_37675 e9d1486e0953a5c087afecff13960900 104 SMART SM00418 17 99 3.1E-7 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_30405 30c22dde8db5b651ba8425bb351d0e3a 169 Gene3D G3DSA:3.30.300.20 2 156 4.5E-35 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta RAM_30405 30c22dde8db5b651ba8425bb351d0e3a 169 Pfam PF02566 OsmC-like protein 61 164 1.1E-15 T 13-10-2018 IPR003718 OsmC/Ohr family RAM_30405 30c22dde8db5b651ba8425bb351d0e3a 169 SUPERFAMILY SSF82784 8 166 6.67E-37 T 13-10-2018 IPR036102 OsmC/Ohr superfamily RAM_07885 ce091990ad80bbab9dee2712c25cbc84 399 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 4 26 7.8E-5 T 13-10-2018 RAM_07885 ce091990ad80bbab9dee2712c25cbc84 399 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 288 302 7.8E-5 T 13-10-2018 RAM_07885 ce091990ad80bbab9dee2712c25cbc84 399 Pfam PF00732 GMC oxidoreductase 3 265 3.8E-12 T 13-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 RAM_07885 ce091990ad80bbab9dee2712c25cbc84 399 Gene3D G3DSA:3.50.50.60 1 159 1.0E-29 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_07885 ce091990ad80bbab9dee2712c25cbc84 399 Gene3D G3DSA:3.50.50.60 162 343 4.9E-25 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_07885 ce091990ad80bbab9dee2712c25cbc84 399 SUPERFAMILY SSF51905 1 290 1.33E-34 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_47380 0a43b2427c9b3f021de64c90979d33c1 396 Gene3D G3DSA:3.40.50.300 8 237 9.0E-10 T 13-10-2018 RAM_47380 0a43b2427c9b3f021de64c90979d33c1 396 SUPERFAMILY SSF52540 6 292 8.77E-19 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_47380 0a43b2427c9b3f021de64c90979d33c1 396 Pfam PF13191 AAA ATPase domain 19 209 3.7E-23 T 13-10-2018 RAM_03210 47ae524587a5d932ced3b176017b93cd 358 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 114 3.1E-21 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 RAM_03210 47ae524587a5d932ced3b176017b93cd 358 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 138 189 2.0E-6 T 13-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 RAM_03210 47ae524587a5d932ced3b176017b93cd 358 SUPERFAMILY SSF51735 3 150 7.36E-31 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_03210 47ae524587a5d932ced3b176017b93cd 358 SUPERFAMILY SSF55347 132 301 1.8E-20 T 13-10-2018 RAM_03210 47ae524587a5d932ced3b176017b93cd 358 Gene3D G3DSA:3.40.50.720 1 125 1.5E-26 T 13-10-2018 RAM_03210 47ae524587a5d932ced3b176017b93cd 358 Gene3D G3DSA:3.30.360.10 126 348 6.7E-28 T 13-10-2018 RAM_15630 a545fde2c05e160f5f8e50bce8ba2e12 269 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 262 1.6E-17 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_15630 a545fde2c05e160f5f8e50bce8ba2e12 269 SUPERFAMILY SSF161098 3 268 4.06E-66 T 13-10-2018 IPR035906 MetI-like superfamily RAM_15630 a545fde2c05e160f5f8e50bce8ba2e12 269 Gene3D G3DSA:1.10.3720.10 4 256 6.3E-60 T 13-10-2018 IPR035906 MetI-like superfamily RAM_05660 c83b8bf644fbb4f75111709b36b04f58 302 SUPERFAMILY SSF47240 93 242 1.4E-9 T 13-10-2018 IPR009078 Ferritin-like superfamily RAM_05660 c83b8bf644fbb4f75111709b36b04f58 302 Pfam PF11583 P-aminobenzoate N-oxygenase AurF 8 282 1.8E-104 T 13-10-2018 IPR025859 P-aminobenzoate N-oxygenase AurF RAM_04805 58ca4dfb30cadaafdf64fbd9923bbeb7 297 Pfam PF00296 Luciferase-like monooxygenase 10 223 2.8E-36 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_04805 58ca4dfb30cadaafdf64fbd9923bbeb7 297 Gene3D G3DSA:3.20.20.30 3 292 4.6E-47 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_04805 58ca4dfb30cadaafdf64fbd9923bbeb7 297 SUPERFAMILY SSF51679 11 293 1.09E-40 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_38425 75f1e4555964df58ef04b951192f3233 499 Pfam PF07519 Tannase and feruloyl esterase 55 498 8.3E-95 T 13-10-2018 IPR011118 Tannase/feruloyl esterase MetaCyc: PWY-6784 RAM_38425 75f1e4555964df58ef04b951192f3233 499 SUPERFAMILY SSF53474 61 458 1.4E-11 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_11415 20ab1d104063be77248922b84514208c 453 Pfam PF06013 Proteins of 100 residues with WXG 34 114 1.5E-9 T 13-10-2018 IPR010310 Type VII secretion system ESAT-6-like RAM_11415 20ab1d104063be77248922b84514208c 453 Gene3D G3DSA:1.10.287.1060 29 121 3.2E-10 T 13-10-2018 RAM_11415 20ab1d104063be77248922b84514208c 453 SUPERFAMILY SSF140453 33 117 1.7E-9 T 13-10-2018 IPR036689 ESAT-6-like superfamily RAM_23775 2d8188eb90c966f037f8752d2607290c 513 Pfam PF00962 Adenosine/AMP deaminase 279 454 3.3E-22 T 13-10-2018 IPR001365 Adenosine/AMP deaminase domain GO:0019239 Reactome: R-HSA-74217 RAM_23775 2d8188eb90c966f037f8752d2607290c 513 Gene3D G3DSA:3.20.20.140 54 461 7.6E-75 T 13-10-2018 RAM_23775 2d8188eb90c966f037f8752d2607290c 513 SUPERFAMILY SSF51556 48 456 3.18E-50 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_20355 a772cced8743ab08e7b1d945f73c0be9 795 SUPERFAMILY SSF51445 46 351 1.14E-31 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_20355 a772cced8743ab08e7b1d945f73c0be9 795 Gene3D G3DSA:3.20.20.70 88 269 1.2E-155 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_20355 a772cced8743ab08e7b1d945f73c0be9 795 Pfam PF02057 Glycosyl hydrolase family 59 46 350 1.1E-78 T 13-10-2018 IPR001286 Glycoside hydrolase, family 59 GO:0004336|GO:0006683 KEGG: 00600+3.2.1.46|Reactome: R-HSA-1660662 RAM_20355 a772cced8743ab08e7b1d945f73c0be9 795 Pfam PF00652 Ricin-type beta-trefoil lectin domain 671 792 2.4E-26 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_20355 a772cced8743ab08e7b1d945f73c0be9 795 Gene3D G3DSA:2.60.120.560 469 663 1.0E-52 T 13-10-2018 RAM_20355 a772cced8743ab08e7b1d945f73c0be9 795 PRINTS PR00850 Glycosyl hydrolase family 59 signature 342 366 1.6E-10 T 13-10-2018 IPR001286 Glycoside hydrolase, family 59 GO:0004336|GO:0006683 KEGG: 00600+3.2.1.46|Reactome: R-HSA-1660662 RAM_20355 a772cced8743ab08e7b1d945f73c0be9 795 PRINTS PR00850 Glycosyl hydrolase family 59 signature 536 565 1.6E-10 T 13-10-2018 IPR001286 Glycoside hydrolase, family 59 GO:0004336|GO:0006683 KEGG: 00600+3.2.1.46|Reactome: R-HSA-1660662 RAM_20355 a772cced8743ab08e7b1d945f73c0be9 795 PRINTS PR00850 Glycosyl hydrolase family 59 signature 107 131 1.6E-10 T 13-10-2018 IPR001286 Glycoside hydrolase, family 59 GO:0004336|GO:0006683 KEGG: 00600+3.2.1.46|Reactome: R-HSA-1660662 RAM_20355 a772cced8743ab08e7b1d945f73c0be9 795 Gene3D G3DSA:2.80.10.50 667 794 1.4E-39 T 13-10-2018 RAM_20355 a772cced8743ab08e7b1d945f73c0be9 795 Gene3D G3DSA:3.20.20.80 43 460 1.2E-155 T 13-10-2018 RAM_20355 a772cced8743ab08e7b1d945f73c0be9 795 SMART SM00458 669 795 2.0E-25 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_20355 a772cced8743ab08e7b1d945f73c0be9 795 SUPERFAMILY SSF50370 670 793 4.58E-37 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_36360 2346f2b1b89e21d2bdf8a4a7823cdc89 268 Pfam PF01555 DNA methylase 29 259 2.9E-41 T 13-10-2018 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 RAM_36360 2346f2b1b89e21d2bdf8a4a7823cdc89 268 ProSitePatterns PS00093 N-4 cytosine-specific DNA methylases signature. 33 38 - T 13-10-2018 IPR017985 DNA methylase, N-4 cytosine-specific, conserved site GO:0003677|GO:0015667|GO:0090124 RAM_36360 2346f2b1b89e21d2bdf8a4a7823cdc89 268 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 66 86 3.9E-26 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 RAM_36360 2346f2b1b89e21d2bdf8a4a7823cdc89 268 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 245 265 3.9E-26 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 RAM_36360 2346f2b1b89e21d2bdf8a4a7823cdc89 268 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 203 220 3.9E-26 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 RAM_36360 2346f2b1b89e21d2bdf8a4a7823cdc89 268 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 28 42 3.9E-26 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 RAM_36360 2346f2b1b89e21d2bdf8a4a7823cdc89 268 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 222 240 3.9E-26 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 RAM_36360 2346f2b1b89e21d2bdf8a4a7823cdc89 268 SUPERFAMILY SSF53335 4 265 7.88E-53 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_36360 2346f2b1b89e21d2bdf8a4a7823cdc89 268 Gene3D G3DSA:3.40.50.150 1 267 2.1E-61 T 13-10-2018 RAM_22700 51e2b030a15bc9ff0b1ee1e5a3b0717f 324 Gene3D G3DSA:3.40.50.720 1 301 1.0E-63 T 13-10-2018 RAM_22700 51e2b030a15bc9ff0b1ee1e5a3b0717f 324 Pfam PF08338 Domain of unknown function (DUF1731) 276 310 3.6E-10 T 13-10-2018 IPR013549 Domain of unknown function DUF1731 RAM_22700 51e2b030a15bc9ff0b1ee1e5a3b0717f 324 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 225 1.3E-10 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 RAM_22700 51e2b030a15bc9ff0b1ee1e5a3b0717f 324 SUPERFAMILY SSF51735 1 272 7.23E-37 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_22700 51e2b030a15bc9ff0b1ee1e5a3b0717f 324 TIGRFAM TIGR01777 yfcH: TIGR01777 family protein 3 304 7.8E-62 T 13-10-2018 IPR010099 Epimerase family protein SDR39U1 RAM_15365 9ae5b6b20d99af122480cc71070e7035 203 Pfam PF01895 PhoU domain 17 102 6.9E-6 T 13-10-2018 IPR026022 PhoU domain RAM_15365 9ae5b6b20d99af122480cc71070e7035 203 Gene3D G3DSA:1.20.58.220 1 196 8.7E-17 T 13-10-2018 IPR038078 PhoU-like domain superfamily RAM_15365 9ae5b6b20d99af122480cc71070e7035 203 SUPERFAMILY SSF109755 4 194 2.09E-17 T 13-10-2018 RAM_08635 8a6a58e5bebe8d1a9a79417b66381969 275 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 136 216 4.4E-10 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_08635 8a6a58e5bebe8d1a9a79417b66381969 275 Gene3D G3DSA:3.40.50.1000 31 243 3.5E-42 T 13-10-2018 IPR023214 HAD superfamily RAM_08635 8a6a58e5bebe8d1a9a79417b66381969 275 Pfam PF13419 Haloacid dehalogenase-like hydrolase 35 221 7.5E-20 T 13-10-2018 RAM_08635 8a6a58e5bebe8d1a9a79417b66381969 275 Gene3D G3DSA:1.10.150.240 42 122 3.5E-42 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 RAM_08635 8a6a58e5bebe8d1a9a79417b66381969 275 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 211 224 2.4E-11 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_08635 8a6a58e5bebe8d1a9a79417b66381969 275 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 165 181 2.4E-11 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_08635 8a6a58e5bebe8d1a9a79417b66381969 275 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 29 40 2.4E-11 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_08635 8a6a58e5bebe8d1a9a79417b66381969 275 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 134 147 2.4E-11 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RAM_08635 8a6a58e5bebe8d1a9a79417b66381969 275 SUPERFAMILY SSF56784 30 248 7.01E-39 T 13-10-2018 IPR036412 HAD-like superfamily RAM_21530 277dc49840b730de4a5faddc4a6f784e 200 Pfam PF01810 LysE type translocator 13 197 4.5E-39 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RAM_28030 1f649fa09e8685941c23689f933c6ee7 91 SUPERFAMILY SSF53474 16 89 1.43E-13 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_28030 1f649fa09e8685941c23689f933c6ee7 91 Gene3D G3DSA:3.40.50.1820 1 90 9.3E-13 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_26140 9fcf7741899e8b75923f7b9381089798 172 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 126 4.7E-15 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RAM_26140 9fcf7741899e8b75923f7b9381089798 172 Gene3D G3DSA:3.10.180.10 1 143 1.2E-29 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_26140 9fcf7741899e8b75923f7b9381089798 172 SUPERFAMILY SSF54593 1 128 1.75E-30 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_37405 c207377dca179c3d172c3eda5c52b78a 286 Gene3D G3DSA:3.40.50.150 159 267 5.8E-8 T 13-10-2018 RAM_37405 c207377dca179c3d172c3eda5c52b78a 286 SUPERFAMILY SSF53335 130 254 3.44E-11 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_37405 c207377dca179c3d172c3eda5c52b78a 286 Pfam PF02384 N-6 DNA Methylase 154 255 5.3E-7 T 13-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 RAM_40600 1e410280f7884f92e84d67340a33e285 296 Gene3D G3DSA:3.30.70.1230 1 175 1.9E-5 T 13-10-2018 IPR029787 Nucleotide cyclase RAM_40600 1e410280f7884f92e84d67340a33e285 296 SUPERFAMILY SSF55073 25 145 7.69E-7 T 13-10-2018 IPR029787 Nucleotide cyclase RAM_34760 90c50e226bcb94dfb7b5b9614f534a39 216 SUPERFAMILY SSF52317 1 213 1.99E-48 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_34760 90c50e226bcb94dfb7b5b9614f534a39 216 Pfam PF06283 Trehalose utilisation 2 209 1.3E-76 T 13-10-2018 IPR029010 ThuA-like domain RAM_34760 90c50e226bcb94dfb7b5b9614f534a39 216 Gene3D G3DSA:3.40.50.880 1 215 4.6E-81 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_09990 ba70e66ee4e587e9de7204b44cf8bc28 332 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 24 250 3.7E-64 T 13-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 RAM_09990 ba70e66ee4e587e9de7204b44cf8bc28 332 SUPERFAMILY SSF102405 56 250 5.34E-30 T 13-10-2018 RAM_09990 ba70e66ee4e587e9de7204b44cf8bc28 332 Gene3D G3DSA:3.40.50.450 2 254 1.5E-84 T 13-10-2018 RAM_09990 ba70e66ee4e587e9de7204b44cf8bc28 332 Pfam PF02481 DNA recombination-mediator protein A 22 242 3.7E-66 T 13-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 RAM_45365 1a253c605a504af3fa5845bafdf283da 391 ProSitePatterns PS00941 Carboxylesterases type-B signature 2. 70 80 - T 13-10-2018 IPR019819 Carboxylesterase type B, conserved site RAM_45365 1a253c605a504af3fa5845bafdf283da 391 Pfam PF00135 Carboxylesterase family 2 295 5.6E-70 T 13-10-2018 IPR002018 Carboxylesterase, type B RAM_45365 1a253c605a504af3fa5845bafdf283da 391 Gene3D G3DSA:3.40.50.1820 308 390 3.1E-6 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_45365 1a253c605a504af3fa5845bafdf283da 391 SUPERFAMILY SSF53474 2 379 6.06E-88 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_45365 1a253c605a504af3fa5845bafdf283da 391 Gene3D G3DSA:3.40.50.1820 1 307 4.8E-90 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_45365 1a253c605a504af3fa5845bafdf283da 391 ProSitePatterns PS00122 Carboxylesterases type-B serine active site. 161 176 - T 13-10-2018 IPR019826 Carboxylesterase type B, active site RAM_05490 a93cf7c5e1c105bd933e925dab0bd871 411 Gene3D G3DSA:3.40.190.10 124 381 1.6E-61 T 13-10-2018 RAM_05490 a93cf7c5e1c105bd933e925dab0bd871 411 SUPERFAMILY SSF53850 19 382 3.15E-59 T 13-10-2018 RAM_05490 a93cf7c5e1c105bd933e925dab0bd871 411 Pfam PF01547 Bacterial extracellular solute-binding protein 38 308 1.3E-23 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein RAM_05490 a93cf7c5e1c105bd933e925dab0bd871 411 Gene3D G3DSA:3.40.190.10 39 360 1.6E-61 T 13-10-2018 RAM_01025 5dbc540ace2f9ffe6c77d4131f7d6739 410 Pfam PF13579 Glycosyl transferase 4-like domain 27 158 1.2E-17 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 RAM_01025 5dbc540ace2f9ffe6c77d4131f7d6739 410 Gene3D G3DSA:3.40.50.2000 18 397 3.2E-57 T 13-10-2018 RAM_01025 5dbc540ace2f9ffe6c77d4131f7d6739 410 Pfam PF13692 Glycosyl transferases group 1 227 367 1.9E-18 T 13-10-2018 RAM_01025 5dbc540ace2f9ffe6c77d4131f7d6739 410 Gene3D G3DSA:3.40.50.2000 203 382 3.2E-57 T 13-10-2018 RAM_01025 5dbc540ace2f9ffe6c77d4131f7d6739 410 SUPERFAMILY SSF53756 14 401 4.45E-58 T 13-10-2018 RAM_41990 b54be4a615e28a475cd38da61ca641e1 280 Pfam PF05572 Pregnancy-associated plasma protein-A 205 257 6.7E-5 T 13-10-2018 IPR008754 Peptidase M43, pregnancy-associated plasma-A Reactome: R-HSA-381426 RAM_41990 b54be4a615e28a475cd38da61ca641e1 280 SUPERFAMILY SSF55486 150 277 1.01E-10 T 13-10-2018 RAM_41990 b54be4a615e28a475cd38da61ca641e1 280 Gene3D G3DSA:3.40.390.10 141 279 8.0E-10 T 13-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 RAM_05440 cae0ac4a01f05a628e3a0ed65d48e032 140 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 22 41 5.4E-10 T 13-10-2018 RAM_05440 cae0ac4a01f05a628e3a0ed65d48e032 140 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 41 59 5.4E-10 T 13-10-2018 RAM_05440 cae0ac4a01f05a628e3a0ed65d48e032 140 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 2 22 5.4E-10 T 13-10-2018 RAM_05440 cae0ac4a01f05a628e3a0ed65d48e032 140 TIGRFAM TIGR01410 tatB: twin arginine-targeting protein translocase TatB 5 83 8.9E-17 T 13-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 RAM_05440 cae0ac4a01f05a628e3a0ed65d48e032 140 Hamap MF_00237 Sec-independent protein translocase protein TatB [tatB]. 2 138 13.954 T 13-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 RAM_05440 cae0ac4a01f05a628e3a0ed65d48e032 140 Pfam PF02416 mttA/Hcf106 family 5 41 1.1E-4 T 13-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 RAM_18490 f273a9887c77ce244db8747025da5ddc 425 SUPERFAMILY SSF51126 5 380 2.87E-7 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor RAM_47450 5941937a761e5bd7ad7cce07ab2f21e7 261 TIGRFAM TIGR03621 F420_MSMEG_2516: probable F420-dependent oxidoreductase, MSMEG_2516 family 2 260 3.4E-82 T 13-10-2018 IPR019923 Luciferase-like, F420-dependent oxidoreductase, MSMEG2516, predicted RAM_47450 5941937a761e5bd7ad7cce07ab2f21e7 261 Gene3D G3DSA:3.20.20.30 1 259 7.5E-43 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_47450 5941937a761e5bd7ad7cce07ab2f21e7 261 Pfam PF00296 Luciferase-like monooxygenase 5 250 5.0E-31 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_47450 5941937a761e5bd7ad7cce07ab2f21e7 261 SUPERFAMILY SSF51679 4 250 7.21E-44 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_42335 23393224981332352a621e5f22c049bb 585 SUPERFAMILY SSF56801 5 581 1.28E-86 T 13-10-2018 RAM_42335 23393224981332352a621e5f22c049bb 585 Gene3D G3DSA:3.40.50.12780 1 467 3.4E-97 T 13-10-2018 RAM_42335 23393224981332352a621e5f22c049bb 585 Pfam PF00501 AMP-binding enzyme 23 474 2.8E-60 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_42335 23393224981332352a621e5f22c049bb 585 Gene3D G3DSA:3.30.300.30 469 581 5.1E-25 T 13-10-2018 RAM_38495 717b0ce85fb6bff1fc8863ce83dbe63e 188 SUPERFAMILY SSF52833 4 184 6.53E-36 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RAM_38495 717b0ce85fb6bff1fc8863ce83dbe63e 188 Pfam PF01323 DSBA-like thioredoxin domain 6 178 2.9E-37 T 13-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 RAM_38495 717b0ce85fb6bff1fc8863ce83dbe63e 188 Gene3D G3DSA:3.40.30.10 2 182 2.0E-60 T 13-10-2018 RAM_13460 a0862873cd5a2b681481aeedaaf85cea 266 Pfam PF05114 Protein of unknown function (DUF692) 5 263 5.4E-84 T 13-10-2018 IPR007801 Uncharacterised protein family UPF0276 RAM_13460 a0862873cd5a2b681481aeedaaf85cea 266 Gene3D G3DSA:3.20.20.150 2 265 7.1E-83 T 13-10-2018 RAM_13460 a0862873cd5a2b681481aeedaaf85cea 266 SUPERFAMILY SSF51658 15 221 1.35E-11 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily RAM_40170 ca80f2e0fc6116586216386ebe3e9996 246 Pfam PF01975 Survival protein SurE 4 177 3.7E-39 T 13-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 RAM_40170 ca80f2e0fc6116586216386ebe3e9996 246 SUPERFAMILY SSF64167 1 237 3.53E-39 T 13-10-2018 RAM_40170 ca80f2e0fc6116586216386ebe3e9996 246 Gene3D G3DSA:3.40.1210.10 1 245 8.1E-54 T 13-10-2018 IPR036523 SurE-like phosphatase/nucleotidase superfamily GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 RAM_12430 a0d9bf28c447d8aa5915226f9054d47a 452 TIGRFAM TIGR03356 BGL: beta-galactosidase 5 443 9.0E-165 T 13-10-2018 IPR017736 Glycoside hydrolase, family 1, beta-glucosidase GO:0008422|GO:0030245 KEGG: 00460+3.2.1.21|KEGG: 00500+3.2.1.21|KEGG: 00940+3.2.1.21|MetaCyc: PWY-3121|MetaCyc: PWY-5176|MetaCyc: PWY-6002|MetaCyc: PWY-6788|MetaCyc: PWY-7091|MetaCyc: PWY-7092|MetaCyc: PWY-7913 RAM_12430 a0d9bf28c447d8aa5915226f9054d47a 452 Gene3D G3DSA:3.20.20.80 1 452 4.2E-162 T 13-10-2018 RAM_12430 a0d9bf28c447d8aa5915226f9054d47a 452 Pfam PF00232 Glycosyl hydrolase family 1 3 450 1.6E-147 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RAM_12430 a0d9bf28c447d8aa5915226f9054d47a 452 PRINTS PR00131 Glycosyl hydrolase family 1 signature 421 433 5.8E-22 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RAM_12430 a0d9bf28c447d8aa5915226f9054d47a 452 PRINTS PR00131 Glycosyl hydrolase family 1 signature 397 414 5.8E-22 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RAM_12430 a0d9bf28c447d8aa5915226f9054d47a 452 PRINTS PR00131 Glycosyl hydrolase family 1 signature 376 387 5.8E-22 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RAM_12430 a0d9bf28c447d8aa5915226f9054d47a 452 PRINTS PR00131 Glycosyl hydrolase family 1 signature 359 367 5.8E-22 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RAM_12430 a0d9bf28c447d8aa5915226f9054d47a 452 PRINTS PR00131 Glycosyl hydrolase family 1 signature 286 300 5.8E-22 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RAM_12430 a0d9bf28c447d8aa5915226f9054d47a 452 SUPERFAMILY SSF51445 4 449 2.23E-151 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_12430 a0d9bf28c447d8aa5915226f9054d47a 452 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 9 23 - T 13-10-2018 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site RAM_12790 8d133f16d615663fccd03435d5a46801 283 Gene3D G3DSA:3.10.129.10 2 155 1.1E-50 T 13-10-2018 RAM_12790 8d133f16d615663fccd03435d5a46801 283 SUPERFAMILY SSF54637 8 155 2.28E-46 T 13-10-2018 IPR029069 HotDog domain superfamily RAM_12790 8d133f16d615663fccd03435d5a46801 283 SUPERFAMILY SSF54637 158 276 3.73E-31 T 13-10-2018 IPR029069 HotDog domain superfamily RAM_12790 8d133f16d615663fccd03435d5a46801 283 Pfam PF01575 MaoC like domain 160 256 1.3E-28 T 13-10-2018 IPR002539 MaoC-like dehydratase domain RAM_12790 8d133f16d615663fccd03435d5a46801 283 Pfam PF13452 N-terminal half of MaoC dehydratase 8 133 1.1E-19 T 13-10-2018 IPR039569 N-terminal of MaoC-like dehydratase Reactome: R-HSA-193368|Reactome: R-HSA-2046106|Reactome: R-HSA-389887|Reactome: R-HSA-390247|Reactome: R-HSA-9033241|Reactome: R-HSA-9033500 RAM_12790 8d133f16d615663fccd03435d5a46801 283 Gene3D G3DSA:3.10.129.10 156 280 7.8E-40 T 13-10-2018 RAM_34725 562a59993000cad1081261df86450f78 486 Gene3D G3DSA:2.30.40.10 43 56 4.2E-88 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_34725 562a59993000cad1081261df86450f78 486 Gene3D G3DSA:3.10.310.70 75 179 4.2E-88 T 13-10-2018 RAM_34725 562a59993000cad1081261df86450f78 486 SUPERFAMILY SSF51556 56 440 3.31E-32 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_34725 562a59993000cad1081261df86450f78 486 Pfam PF07969 Amidohydrolase family 45 483 1.1E-53 T 13-10-2018 IPR013108 Amidohydrolase 3 RAM_34725 562a59993000cad1081261df86450f78 486 SUPERFAMILY SSF51338 18 484 5.46E-10 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_34725 562a59993000cad1081261df86450f78 486 Gene3D G3DSA:3.20.20.140 57 437 4.2E-88 T 13-10-2018 RAM_25125 309a0ea2495c1032898b837c388b9593 72 SUPERFAMILY SSF53335 3 68 7.35E-11 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_25125 309a0ea2495c1032898b837c388b9593 72 Gene3D G3DSA:3.40.50.150 8 69 1.2E-11 T 13-10-2018 RAM_43445 2c57934ac255a0f9da51ec547a9a37f7 401 Pfam PF12704 MacB-like periplasmic core domain 33 236 9.9E-14 T 13-10-2018 IPR025857 MacB-like periplasmic core domain RAM_43445 2c57934ac255a0f9da51ec547a9a37f7 401 Pfam PF02687 FtsX-like permease family 308 395 8.5E-11 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 RAM_10005 fc7b535a85155a6617b3bfaedd205aec 211 Pfam PF01551 Peptidase family M23 98 192 1.7E-16 T 13-10-2018 IPR016047 Peptidase M23 RAM_10005 fc7b535a85155a6617b3bfaedd205aec 211 Gene3D G3DSA:2.70.70.10 61 196 5.6E-22 T 13-10-2018 IPR011055 Duplicated hybrid motif RAM_10005 fc7b535a85155a6617b3bfaedd205aec 211 SUPERFAMILY SSF51261 47 193 1.67E-18 T 13-10-2018 IPR011055 Duplicated hybrid motif RAM_12370 c4b49873f48aa2006ab12a2b47bb3408 387 Pfam PF11887 Cholesterol uptake porter CUP1 of Mce4, putative 173 285 1.1E-8 T 13-10-2018 IPR024516 Mammalian cell entry, C-terminal RAM_12370 c4b49873f48aa2006ab12a2b47bb3408 387 Pfam PF02470 MlaD protein 43 118 8.1E-18 T 13-10-2018 IPR003399 Mce/MlaD RAM_12370 c4b49873f48aa2006ab12a2b47bb3408 387 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 12 304 3.9E-63 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_21600 ef2e86a83180566525ebe20770c8542f 374 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 297 307 - T 13-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site RAM_21600 ef2e86a83180566525ebe20770c8542f 374 Gene3D G3DSA:3.40.50.200 50 372 4.4E-56 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RAM_21600 ef2e86a83180566525ebe20770c8542f 374 Pfam PF00082 Subtilase family 144 309 3.0E-5 T 13-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RAM_21600 ef2e86a83180566525ebe20770c8542f 374 SUPERFAMILY SSF52743 51 370 1.44E-31 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RAM_00455 65135d04cf99c037e4f180af08e71220 461 Gene3D G3DSA:1.25.40.10 206 386 1.3E-13 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_00455 65135d04cf99c037e4f180af08e71220 461 SUPERFAMILY SSF47413 39 91 1.21E-8 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_00455 65135d04cf99c037e4f180af08e71220 461 Pfam PF13424 Tetratricopeptide repeat 229 282 1.7E-7 T 13-10-2018 RAM_00455 65135d04cf99c037e4f180af08e71220 461 SUPERFAMILY SSF48452 217 326 6.45E-12 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_00455 65135d04cf99c037e4f180af08e71220 461 SMART SM00530 38 93 8.3E-7 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_00455 65135d04cf99c037e4f180af08e71220 461 Gene3D G3DSA:1.10.260.40 14 89 5.7E-8 T 13-10-2018 RAM_00455 65135d04cf99c037e4f180af08e71220 461 Pfam PF13560 Helix-turn-helix domain 42 90 3.1E-7 T 13-10-2018 RAM_05500 15903ed1019eb6377ec075cb80483ee9 279 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 272 1.6E-21 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_05500 15903ed1019eb6377ec075cb80483ee9 279 SUPERFAMILY SSF161098 12 279 5.14E-74 T 13-10-2018 IPR035906 MetI-like superfamily RAM_05500 15903ed1019eb6377ec075cb80483ee9 279 Gene3D G3DSA:1.10.3720.10 9 266 4.1E-66 T 13-10-2018 IPR035906 MetI-like superfamily RAM_24345 5219759cac3940f06605a677fa3a9664 630 Gene3D G3DSA:1.25.40.10 192 453 3.6E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_36125 1d47457a5280462fb5df29b50290590c 298 SUPERFAMILY SSF53067 2 296 3.76E-55 T 13-10-2018 RAM_36125 1d47457a5280462fb5df29b50290590c 298 Gene3D G3DSA:3.30.420.40 4 290 7.7E-77 T 13-10-2018 RAM_36125 1d47457a5280462fb5df29b50290590c 298 Gene3D G3DSA:3.30.420.40 124 278 7.7E-77 T 13-10-2018 RAM_36125 1d47457a5280462fb5df29b50290590c 298 Pfam PF00480 ROK family 3 292 4.6E-57 T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 RAM_21810 b5081e2df87ebe992b7b4280d0e28062 396 Gene3D G3DSA:3.40.50.720 169 352 2.4E-126 T 13-10-2018 RAM_21810 b5081e2df87ebe992b7b4280d0e28062 396 SUPERFAMILY SSF51735 156 351 4.45E-49 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_21810 b5081e2df87ebe992b7b4280d0e28062 396 SUPERFAMILY SSF50129 1 188 3.77E-59 T 13-10-2018 IPR011032 GroES-like superfamily RAM_21810 b5081e2df87ebe992b7b4280d0e28062 396 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 143 3.4E-29 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_21810 b5081e2df87ebe992b7b4280d0e28062 396 Pfam PF00107 Zinc-binding dehydrogenase 189 258 1.5E-14 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RAM_21810 b5081e2df87ebe992b7b4280d0e28062 396 Gene3D G3DSA:3.90.180.10 4 382 2.4E-126 T 13-10-2018 RAM_21810 b5081e2df87ebe992b7b4280d0e28062 396 Pfam PF13823 Alcohol dehydrogenase GroES-associated 1 23 3.9E-15 T 13-10-2018 IPR027399 Alcohol dehydrogenase GroES-associated RAM_21810 b5081e2df87ebe992b7b4280d0e28062 396 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 59 73 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 RAM_10935 a758c24dbdec6bbee139d28819a341a1 208 SUPERFAMILY SSF46785 3 72 1.5E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_10935 a758c24dbdec6bbee139d28819a341a1 208 SMART SM00345 10 68 3.1E-11 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_10935 a758c24dbdec6bbee139d28819a341a1 208 Gene3D G3DSA:1.10.10.10 1 68 5.9E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_10935 a758c24dbdec6bbee139d28819a341a1 208 SMART SM00895 78 198 0.0025 T 13-10-2018 IPR011711 GntR, C-terminal RAM_10935 a758c24dbdec6bbee139d28819a341a1 208 Gene3D G3DSA:1.20.120.530 73 205 3.6E-17 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_10935 a758c24dbdec6bbee139d28819a341a1 208 Pfam PF00392 Bacterial regulatory proteins, gntR family 8 68 3.3E-14 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_10935 a758c24dbdec6bbee139d28819a341a1 208 SUPERFAMILY SSF48008 74 200 3.92E-17 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_10935 a758c24dbdec6bbee139d28819a341a1 208 Pfam PF07729 FCD domain 83 191 1.0E-14 T 13-10-2018 IPR011711 GntR, C-terminal RAM_41120 d667e5dffb7eb9b48fde5e8842b41a91 141 Pfam PF11208 Protein of unknown function (DUF2992) 5 141 2.0E-36 T 13-10-2018 IPR016787 Uncharacterised conserved protein UCP021328 RAM_28545 379713ffc128b0b3f7b3a3491477d19b 295 Gene3D G3DSA:3.40.1090.10 3 99 1.9E-10 T 13-10-2018 RAM_28545 379713ffc128b0b3f7b3a3491477d19b 295 Gene3D G3DSA:3.40.1090.10 138 214 8.2E-11 T 13-10-2018 RAM_28545 379713ffc128b0b3f7b3a3491477d19b 295 Pfam PF01734 Patatin-like phospholipase 14 204 1.6E-18 T 13-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 RAM_28545 379713ffc128b0b3f7b3a3491477d19b 295 SUPERFAMILY SSF52151 8 213 9.68E-29 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RAM_16975 09c169fdd2c9aac082222acf4d693150 196 Pfam PF04542 Sigma-70 region 2 29 94 1.0E-12 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_16975 09c169fdd2c9aac082222acf4d693150 196 SUPERFAMILY SSF88946 7 102 2.75E-17 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_16975 09c169fdd2c9aac082222acf4d693150 196 SUPERFAMILY SSF88659 119 183 5.45E-16 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_16975 09c169fdd2c9aac082222acf4d693150 196 Pfam PF08281 Sigma-70, region 4 128 177 1.6E-16 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_16975 09c169fdd2c9aac082222acf4d693150 196 Gene3D G3DSA:1.10.10.10 107 185 2.6E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_16975 09c169fdd2c9aac082222acf4d693150 196 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 25 182 1.5E-25 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_16975 09c169fdd2c9aac082222acf4d693150 196 Gene3D G3DSA:1.10.1740.10 5 93 1.4E-14 T 13-10-2018 RAM_03260 32f0ace768928d83c44831de6da36aca 435 Gene3D G3DSA:3.90.1150.10 306 434 2.0E-43 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_03260 32f0ace768928d83c44831de6da36aca 435 SUPERFAMILY SSF53383 40 432 1.21E-96 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_03260 32f0ace768928d83c44831de6da36aca 435 Gene3D G3DSA:3.40.640.10 3 305 6.0E-89 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_03260 32f0ace768928d83c44831de6da36aca 435 PIRSF PIRSF000390 31 435 9.9E-97 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase RAM_03260 32f0ace768928d83c44831de6da36aca 435 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 53 428 5.0E-90 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase RAM_13305 b5d212edb2f6b4e70e0ec19dbd60533f 336 SMART SM00354 1 72 2.6E-24 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_13305 b5d212edb2f6b4e70e0ec19dbd60533f 336 Pfam PF00356 Bacterial regulatory proteins, lacI family 5 49 7.7E-12 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_13305 b5d212edb2f6b4e70e0ec19dbd60533f 336 SUPERFAMILY SSF47413 1 60 2.06E-13 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_13305 b5d212edb2f6b4e70e0ec19dbd60533f 336 Pfam PF13377 Periplasmic binding protein-like domain 170 330 2.6E-35 T 13-10-2018 RAM_13305 b5d212edb2f6b4e70e0ec19dbd60533f 336 Gene3D G3DSA:3.40.50.2300 161 290 1.3E-76 T 13-10-2018 RAM_13305 b5d212edb2f6b4e70e0ec19dbd60533f 336 Gene3D G3DSA:3.40.50.2300 57 307 1.3E-76 T 13-10-2018 RAM_13305 b5d212edb2f6b4e70e0ec19dbd60533f 336 Gene3D G3DSA:1.10.260.40 1 56 4.1E-19 T 13-10-2018 RAM_13305 b5d212edb2f6b4e70e0ec19dbd60533f 336 SUPERFAMILY SSF53822 62 332 2.16E-75 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_35705 2172ddf858e35d1b52245f8eabaa7868 309 SMART SM00849 41 264 1.9E-10 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_35705 2172ddf858e35d1b52245f8eabaa7868 309 Pfam PF13483 Beta-lactamase superfamily domain 37 243 4.3E-12 T 13-10-2018 RAM_35705 2172ddf858e35d1b52245f8eabaa7868 309 SUPERFAMILY SSF56281 32 274 6.29E-23 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_35705 2172ddf858e35d1b52245f8eabaa7868 309 Gene3D G3DSA:3.60.15.10 26 308 8.1E-29 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_40670 e1fc90e481ab2377e944d8e908194183 348 Pfam PF03235 Protein of unknown function DUF262 36 164 1.7E-27 T 13-10-2018 IPR004919 Domain of unknown function DUF262 RAM_05705 3ae35763d7eb05c1f508095c49b3f42f 463 Gene3D G3DSA:1.20.1250.20 226 459 6.0E-69 T 13-10-2018 RAM_05705 3ae35763d7eb05c1f508095c49b3f42f 463 Pfam PF07690 Major Facilitator Superfamily 53 363 9.8E-25 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_05705 3ae35763d7eb05c1f508095c49b3f42f 463 Gene3D G3DSA:1.20.1250.20 7 225 6.9E-68 T 13-10-2018 RAM_05705 3ae35763d7eb05c1f508095c49b3f42f 463 SUPERFAMILY SSF103473 22 446 4.71E-51 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_43975 0b62dc677814c2e83ed5873f7a8a9d21 102 Pfam PF11662 Protein of unknown function (DUF3263) 21 92 9.5E-37 T 13-10-2018 IPR021678 Protein of unknown function DUF3263 RAM_17365 522347e0c2068ebd1d96f48dd6e0815c 184 ProDom PD016028 PROTEASE METALLOPROTEASE EXTRACELLULAR NEUTRAL SMALL METAL-BINDING ZINC HYDROLASE SNAPALYSIN ZYMOGEN 45 167 1.0E-47 T 13-10-2018 IPR000013 Peptidase M7, snapalysin GO:0004222|GO:0005576|GO:0006508|GO:0008270 RAM_17365 522347e0c2068ebd1d96f48dd6e0815c 184 Gene3D G3DSA:3.40.390.10 35 167 4.0E-44 T 13-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 RAM_17365 522347e0c2068ebd1d96f48dd6e0815c 184 PIRSF PIRSF016573 1 35 20.0 T 13-10-2018 IPR000013 Peptidase M7, snapalysin GO:0004222|GO:0005576|GO:0006508|GO:0008270 RAM_17365 522347e0c2068ebd1d96f48dd6e0815c 184 PIRSF PIRSF016573 21 180 3.8E-72 T 13-10-2018 IPR000013 Peptidase M7, snapalysin GO:0004222|GO:0005576|GO:0006508|GO:0008270 RAM_17365 522347e0c2068ebd1d96f48dd6e0815c 184 PRINTS PR00787 Streptomyces extracellular neutral proteinase (M7) family signature 42 68 1.4E-51 T 13-10-2018 IPR000013 Peptidase M7, snapalysin GO:0004222|GO:0005576|GO:0006508|GO:0008270 RAM_17365 522347e0c2068ebd1d96f48dd6e0815c 184 PRINTS PR00787 Streptomyces extracellular neutral proteinase (M7) family signature 75 99 1.4E-51 T 13-10-2018 IPR000013 Peptidase M7, snapalysin GO:0004222|GO:0005576|GO:0006508|GO:0008270 RAM_17365 522347e0c2068ebd1d96f48dd6e0815c 184 PRINTS PR00787 Streptomyces extracellular neutral proteinase (M7) family signature 125 149 1.4E-51 T 13-10-2018 IPR000013 Peptidase M7, snapalysin GO:0004222|GO:0005576|GO:0006508|GO:0008270 RAM_17365 522347e0c2068ebd1d96f48dd6e0815c 184 PRINTS PR00787 Streptomyces extracellular neutral proteinase (M7) family signature 100 124 1.4E-51 T 13-10-2018 IPR000013 Peptidase M7, snapalysin GO:0004222|GO:0005576|GO:0006508|GO:0008270 RAM_17365 522347e0c2068ebd1d96f48dd6e0815c 184 PRINTS PR00787 Streptomyces extracellular neutral proteinase (M7) family signature 152 166 1.4E-51 T 13-10-2018 IPR000013 Peptidase M7, snapalysin GO:0004222|GO:0005576|GO:0006508|GO:0008270 RAM_17365 522347e0c2068ebd1d96f48dd6e0815c 184 SUPERFAMILY SSF55486 37 164 2.78E-28 T 13-10-2018 RAM_17365 522347e0c2068ebd1d96f48dd6e0815c 184 Pfam PF02031 Streptomyces extracellular neutral proteinase (M7) family 36 167 3.9E-66 T 13-10-2018 IPR000013 Peptidase M7, snapalysin GO:0004222|GO:0005576|GO:0006508|GO:0008270 RAM_36280 3535e8f5d088f090287f868ba81010b6 363 Gene3D G3DSA:3.40.430.10 2 221 1.5E-51 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RAM_36280 3535e8f5d088f090287f868ba81010b6 363 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 226 321 1.4E-17 T 13-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain RAM_36280 3535e8f5d088f090287f868ba81010b6 363 SUPERFAMILY SSF53927 222 347 5.69E-27 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 RAM_36280 3535e8f5d088f090287f868ba81010b6 363 Pfam PF01872 RibD C-terminal domain 5 192 9.1E-39 T 13-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 RAM_36280 3535e8f5d088f090287f868ba81010b6 363 Gene3D G3DSA:3.40.140.10 222 354 3.3E-30 T 13-10-2018 RAM_36280 3535e8f5d088f090287f868ba81010b6 363 SUPERFAMILY SSF53597 3 189 1.44E-37 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RAM_41285 394dbfa61caf10729efa8865cb3c5de5 230 SMART SM00448 1 110 4.5E-35 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_41285 394dbfa61caf10729efa8865cb3c5de5 230 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 218 1.5E-22 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_41285 394dbfa61caf10729efa8865cb3c5de5 230 Pfam PF00072 Response regulator receiver domain 1 110 6.3E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_41285 394dbfa61caf10729efa8865cb3c5de5 230 Gene3D G3DSA:3.40.50.2300 1 123 2.6E-34 T 13-10-2018 RAM_41285 394dbfa61caf10729efa8865cb3c5de5 230 SMART SM00862 144 219 2.2E-21 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_41285 394dbfa61caf10729efa8865cb3c5de5 230 Gene3D G3DSA:1.10.10.10 124 227 1.1E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_41285 394dbfa61caf10729efa8865cb3c5de5 230 SUPERFAMILY SSF52172 1 165 6.83E-37 T 13-10-2018 IPR011006 CheY-like superfamily RAM_40660 f1b231bfeedef954a29268e00dfc3add 249 Gene3D G3DSA:1.10.260.40 5 74 2.5E-7 T 13-10-2018 RAM_40660 f1b231bfeedef954a29268e00dfc3add 249 SUPERFAMILY SSF47413 3 56 4.77E-8 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_21180 e485a865322b7cc236933801bc573362 322 Pfam PF03601 Conserved hypothetical protein 698 11 303 1.2E-62 T 13-10-2018 IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 RAM_25215 c1be1663753ac085daef4822fbcf94a7 237 Gene3D G3DSA:3.40.50.150 3 237 2.9E-61 T 13-10-2018 RAM_25215 c1be1663753ac085daef4822fbcf94a7 237 Pfam PF13649 Methyltransferase domain 39 129 4.9E-10 T 13-10-2018 RAM_25215 c1be1663753ac085daef4822fbcf94a7 237 SUPERFAMILY SSF53335 18 234 6.03E-30 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_32880 992e1fb85b834de2659ab9bcbad60f77 476 Gene3D G3DSA:2.115.10.20 1 296 7.4E-91 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily RAM_32880 992e1fb85b834de2659ab9bcbad60f77 476 SUPERFAMILY SSF75005 4 290 1.43E-87 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily RAM_32880 992e1fb85b834de2659ab9bcbad60f77 476 SUPERFAMILY SSF49899 297 460 1.11E-8 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily RAM_32880 992e1fb85b834de2659ab9bcbad60f77 476 Gene3D G3DSA:2.60.120.200 298 475 8.4E-13 T 13-10-2018 RAM_32880 992e1fb85b834de2659ab9bcbad60f77 476 Pfam PF04616 Glycosyl hydrolases family 43 2 282 8.5E-86 T 13-10-2018 IPR006710 Glycoside hydrolase, family 43 GO:0004553|GO:0005975 RAM_16405 76b24ff836bbddc5579c5231884c0585 178 Gene3D G3DSA:1.10.10.10 34 174 9.7E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_16405 76b24ff836bbddc5579c5231884c0585 178 SUPERFAMILY SSF46785 37 167 3.5E-26 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_16405 76b24ff836bbddc5579c5231884c0585 178 SMART SM00347 55 154 1.9E-15 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_16405 76b24ff836bbddc5579c5231884c0585 178 Pfam PF01047 MarR family 64 119 1.9E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_16405 76b24ff836bbddc5579c5231884c0585 178 PRINTS PR00598 Bacterial regulatory protein MarR family signature 95 110 6.2E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_16405 76b24ff836bbddc5579c5231884c0585 178 PRINTS PR00598 Bacterial regulatory protein MarR family signature 144 164 6.2E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_16405 76b24ff836bbddc5579c5231884c0585 178 PRINTS PR00598 Bacterial regulatory protein MarR family signature 114 130 6.2E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_44690 8aed8c4cd79c33dd7130e55df4347c86 395 Gene3D G3DSA:3.30.2010.10 169 258 2.1E-8 T 13-10-2018 RAM_44690 8aed8c4cd79c33dd7130e55df4347c86 395 Pfam PF01435 Peptidase family M48 184 367 1.9E-19 T 13-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 RAM_27340 e58995895a52f3e9fb6d244428706863 497 Gene3D G3DSA:2.60.120.260 352 496 1.0E-32 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_27340 e58995895a52f3e9fb6d244428706863 497 Pfam PF04616 Glycosyl hydrolases family 43 58 271 5.4E-16 T 13-10-2018 IPR006710 Glycoside hydrolase, family 43 GO:0004553|GO:0005975 RAM_27340 e58995895a52f3e9fb6d244428706863 497 Gene3D G3DSA:2.115.10.20 17 351 7.5E-68 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily RAM_27340 e58995895a52f3e9fb6d244428706863 497 SUPERFAMILY SSF75005 48 344 6.14E-34 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily RAM_23125 b073da0841312688961cf8327b639b31 332 Pfam PF02653 Branched-chain amino acid transport system / permease component 43 307 3.7E-41 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 RAM_41025 2babafddf1de908cdf86b8e3ea6840ec 253 Pfam PF00588 SpoU rRNA Methylase family 107 244 5.0E-31 T 13-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 RAM_41025 2babafddf1de908cdf86b8e3ea6840ec 253 SUPERFAMILY SSF55315 9 86 1.29E-9 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like RAM_41025 2babafddf1de908cdf86b8e3ea6840ec 253 SMART SM00967 15 92 3.9E-9 T 13-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 RAM_41025 2babafddf1de908cdf86b8e3ea6840ec 253 SUPERFAMILY SSF75217 99 251 1.05E-38 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases RAM_41025 2babafddf1de908cdf86b8e3ea6840ec 253 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 16 89 2.9E-12 T 13-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 RAM_41025 2babafddf1de908cdf86b8e3ea6840ec 253 Gene3D G3DSA:3.30.1330.30 6 87 1.3E-6 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like RAM_41025 2babafddf1de908cdf86b8e3ea6840ec 253 Gene3D G3DSA:3.40.1280.10 90 252 1.4E-41 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RAM_23140 e09de535f939d8e9df93a773b342e2f3 391 SUPERFAMILY SSF51658 28 363 1.33E-94 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily RAM_23140 e09de535f939d8e9df93a773b342e2f3 391 Gene3D G3DSA:3.20.20.150 4 383 5.0E-129 T 13-10-2018 RAM_23140 e09de535f939d8e9df93a773b342e2f3 391 TIGRFAM TIGR02635 RhaI_grampos: L-rhamnose isomerase 8 381 2.3E-192 T 13-10-2018 IPR013457 Rhamnose isomerase-related RAM_23140 e09de535f939d8e9df93a773b342e2f3 391 Pfam PF06134 L-rhamnose isomerase (RhaA) 97 340 1.3E-7 T 13-10-2018 IPR009308 Rhamnose isomerase GO:0008740|GO:0019299|GO:0030145 KEGG: 00051+5.3.1.14 RAM_43525 53972351b974cf821c42c4552cbd3244 418 SUPERFAMILY SSF103473 8 399 1.12E-46 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_43525 53972351b974cf821c42c4552cbd3244 418 Gene3D G3DSA:1.20.1250.20 4 394 6.5E-44 T 13-10-2018 RAM_43525 53972351b974cf821c42c4552cbd3244 418 Pfam PF05977 Transmembrane secretion effector 2 396 4.2E-55 T 13-10-2018 IPR010290 Transmembrane secretion effector RAM_21155 6a333c64c4c4c56e411e5470d00cf1a8 341 Gene3D G3DSA:3.40.50.300 3 198 2.7E-52 T 13-10-2018 RAM_21155 6a333c64c4c4c56e411e5470d00cf1a8 341 SUPERFAMILY SSF90002 228 318 6.8E-15 T 13-10-2018 RAM_21155 6a333c64c4c4c56e411e5470d00cf1a8 341 SUPERFAMILY SSF52540 4 189 1.14E-29 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_21155 6a333c64c4c4c56e411e5470d00cf1a8 341 SMART SM00833 227 318 4.4E-12 T 13-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal RAM_21155 6a333c64c4c4c56e411e5470d00cf1a8 341 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 228 318 6.2E-19 T 13-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal RAM_21155 6a333c64c4c4c56e411e5470d00cf1a8 341 Gene3D G3DSA:3.30.1220.10 210 319 3.4E-8 T 13-10-2018 IPR036627 CobW-like, C-terminal domain superfamily RAM_21155 6a333c64c4c4c56e411e5470d00cf1a8 341 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 7 181 1.3E-43 T 13-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain RAM_13510 782262153da0855d58e8e041e378702d 72 Pfam PF00575 S1 RNA binding domain 11 41 7.3E-5 T 13-10-2018 IPR003029 S1 domain GO:0003676 RAM_13510 782262153da0855d58e8e041e378702d 72 Gene3D G3DSA:2.40.50.140 1 47 1.0E-8 T 13-10-2018 RAM_13510 782262153da0855d58e8e041e378702d 72 SMART SM00316 12 72 6.4E-7 T 13-10-2018 IPR022967 RNA-binding domain, S1 RAM_13510 782262153da0855d58e8e041e378702d 72 SUPERFAMILY SSF50249 2 69 1.42E-10 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_34085 2115e9c3a5256860f5981cdc9830607a 521 Gene3D G3DSA:1.10.4160.10 25 463 3.8E-128 T 13-10-2018 IPR038271 Purine-cytosine permease superfamily RAM_34085 2115e9c3a5256860f5981cdc9830607a 521 TIGRFAM TIGR00800 ncs1: NCS1 nucleoside transporter family 33 455 3.9E-125 T 13-10-2018 IPR012681 Nucleobase cation symporter-1, NCS1 GO:0016020|GO:0022857|GO:0055085 RAM_34085 2115e9c3a5256860f5981cdc9830607a 521 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 38 486 2.1E-131 T 13-10-2018 IPR001248 Purine-cytosine permease GO:0016020|GO:0022857|GO:0055085 RAM_32270 e1ca7d3f96b83ba4ff53bfa7560bf769 275 SUPERFAMILY SSF69593 32 224 2.75E-28 T 13-10-2018 RAM_32270 e1ca7d3f96b83ba4ff53bfa7560bf769 275 Pfam PF01553 Acyltransferase 46 169 2.9E-18 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 RAM_32270 e1ca7d3f96b83ba4ff53bfa7560bf769 275 SMART SM00563 53 173 1.9E-29 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 RAM_10700 ccf9d15ed5c08f47871914de6f186a59 302 SUPERFAMILY SSF52540 4 220 6.79E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_10700 ccf9d15ed5c08f47871914de6f186a59 302 SMART SM00382 28 207 1.6E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_10700 ccf9d15ed5c08f47871914de6f186a59 302 ProSitePatterns PS00211 ABC transporters family signature. 132 146 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_10700 ccf9d15ed5c08f47871914de6f186a59 302 Pfam PF00005 ABC transporter 19 159 3.9E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_10700 ccf9d15ed5c08f47871914de6f186a59 302 Gene3D G3DSA:3.40.50.300 1 226 2.7E-66 T 13-10-2018 RAM_10700 ccf9d15ed5c08f47871914de6f186a59 302 Pfam PF13732 Domain of unknown function (DUF4162) 213 295 4.7E-9 T 13-10-2018 IPR025302 Domain of unknown function DUF4162 RAM_23210 9ef29144ec8e014c8c69cf9adc4097a6 144 Gene3D G3DSA:1.10.260.40 1 132 2.2E-40 T 13-10-2018 RAM_33415 3955ba12402ef57404998f8e67f99161 216 SUPERFAMILY SSF52317 1 200 4.87E-27 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_33415 3955ba12402ef57404998f8e67f99161 216 Gene3D G3DSA:3.40.50.880 1 211 1.3E-41 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_33415 3955ba12402ef57404998f8e67f99161 216 Pfam PF01965 DJ-1/PfpI family 3 182 2.0E-9 T 13-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 RAM_35495 072d7746436af7e62061e507166729d6 324 Gene3D G3DSA:1.10.3720.10 82 324 4.7E-69 T 13-10-2018 IPR035906 MetI-like superfamily RAM_35495 072d7746436af7e62061e507166729d6 324 SUPERFAMILY SSF161098 86 310 1.13E-59 T 13-10-2018 IPR035906 MetI-like superfamily RAM_35495 072d7746436af7e62061e507166729d6 324 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 123 319 4.4E-17 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_17120 54b942cd21f34302d9bd88475a9a36e3 581 SUPERFAMILY SSF56801 20 572 3.27E-102 T 13-10-2018 RAM_17120 54b942cd21f34302d9bd88475a9a36e3 581 Gene3D G3DSA:3.30.300.30 466 580 4.6E-39 T 13-10-2018 RAM_17120 54b942cd21f34302d9bd88475a9a36e3 581 Gene3D G3DSA:3.40.50.12780 13 465 3.9E-146 T 13-10-2018 RAM_17120 54b942cd21f34302d9bd88475a9a36e3 581 Pfam PF00501 AMP-binding enzyme 27 471 7.6E-77 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_27485 2e7e1e9f2f1f43e30a4b4562575ef78c 2156 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 1906 1979 9.8E-22 T 13-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 RAM_27485 2e7e1e9f2f1f43e30a4b4562575ef78c 2156 Pfam PF05593 RHS Repeat 1475 1512 4.7E-7 T 13-10-2018 IPR031325 RHS repeat RAM_27485 2e7e1e9f2f1f43e30a4b4562575ef78c 2156 Pfam PF05593 RHS Repeat 1623 1658 8.2E-6 T 13-10-2018 IPR031325 RHS repeat RAM_27485 2e7e1e9f2f1f43e30a4b4562575ef78c 2156 Pfam PF05593 RHS Repeat 1286 1323 7.4E-5 T 13-10-2018 IPR031325 RHS repeat RAM_27485 2e7e1e9f2f1f43e30a4b4562575ef78c 2156 Pfam PF05593 RHS Repeat 1560 1596 6.0E-9 T 13-10-2018 IPR031325 RHS repeat RAM_27485 2e7e1e9f2f1f43e30a4b4562575ef78c 2156 Pfam PF05593 RHS Repeat 1220 1254 9.7E-7 T 13-10-2018 IPR031325 RHS repeat RAM_27485 2e7e1e9f2f1f43e30a4b4562575ef78c 2156 Gene3D G3DSA:2.180.10.10 1367 1548 2.5E-9 T 13-10-2018 RAM_27485 2e7e1e9f2f1f43e30a4b4562575ef78c 2156 Gene3D G3DSA:2.180.10.10 1549 1665 1.0E-5 T 13-10-2018 RAM_27485 2e7e1e9f2f1f43e30a4b4562575ef78c 2156 Gene3D G3DSA:2.180.10.10 1865 1979 7.6E-24 T 13-10-2018 RAM_27485 2e7e1e9f2f1f43e30a4b4562575ef78c 2156 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1439 1472 7.8E-4 T 13-10-2018 IPR006530 YD repeat RAM_27485 2e7e1e9f2f1f43e30a4b4562575ef78c 2156 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1475 1514 5.9E-7 T 13-10-2018 IPR006530 YD repeat RAM_27485 2e7e1e9f2f1f43e30a4b4562575ef78c 2156 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1172 1205 0.0011 T 13-10-2018 IPR006530 YD repeat RAM_27485 2e7e1e9f2f1f43e30a4b4562575ef78c 2156 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1517 1557 1.8E-5 T 13-10-2018 IPR006530 YD repeat RAM_27485 2e7e1e9f2f1f43e30a4b4562575ef78c 2156 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1396 1430 3.6E-6 T 13-10-2018 IPR006530 YD repeat RAM_27485 2e7e1e9f2f1f43e30a4b4562575ef78c 2156 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1560 1594 1.0E-6 T 13-10-2018 IPR006530 YD repeat RAM_27485 2e7e1e9f2f1f43e30a4b4562575ef78c 2156 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1292 1326 2.3E-5 T 13-10-2018 IPR006530 YD repeat RAM_27485 2e7e1e9f2f1f43e30a4b4562575ef78c 2156 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1212 1239 9.3E-4 T 13-10-2018 IPR006530 YD repeat RAM_27485 2e7e1e9f2f1f43e30a4b4562575ef78c 2156 Gene3D G3DSA:3.90.930.1 1156 1271 2.7E-5 T 13-10-2018 RAM_20735 7d3886f737a1e6ea1ab4264b758040e1 415 Pfam PF01593 Flavin containing amine oxidoreductase 16 404 1.3E-34 T 13-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 RAM_20735 7d3886f737a1e6ea1ab4264b758040e1 415 Gene3D G3DSA:3.50.50.60 4 268 2.2E-31 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_20735 7d3886f737a1e6ea1ab4264b758040e1 415 SUPERFAMILY SSF51905 4 407 2.3E-50 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_38950 0fb3c65f90ca333877cb4cc812ade5d4 569 Pfam PF02018 Carbohydrate binding domain 9 118 4.0E-10 T 13-10-2018 IPR003305 Carbohydrate-binding, CenC-like GO:0016798 RAM_38950 0fb3c65f90ca333877cb4cc812ade5d4 569 SUPERFAMILY SSF49265 140 226 1.21E-13 T 13-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 RAM_38950 0fb3c65f90ca333877cb4cc812ade5d4 569 Gene3D G3DSA:2.60.40.10 141 224 5.1E-17 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_38950 0fb3c65f90ca333877cb4cc812ade5d4 569 Pfam PF00704 Glycosyl hydrolases family 18 237 550 2.6E-25 T 13-10-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 RAM_38950 0fb3c65f90ca333877cb4cc812ade5d4 569 SUPERFAMILY SSF51445 234 560 3.11E-54 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_38950 0fb3c65f90ca333877cb4cc812ade5d4 569 SUPERFAMILY SSF49785 9 133 5.1E-11 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_38950 0fb3c65f90ca333877cb4cc812ade5d4 569 SMART SM00636 235 550 2.3E-6 T 13-10-2018 IPR011583 Chitinase II GO:0008061 RAM_38950 0fb3c65f90ca333877cb4cc812ade5d4 569 ProSitePatterns PS01095 Chitinases family 18 active site. 347 355 - T 13-10-2018 IPR001579 Glycoside hydrolase, chitinase active site GO:0004553|GO:0005975 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 RAM_38950 0fb3c65f90ca333877cb4cc812ade5d4 569 SMART SM00060 143 214 6.4E-7 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 RAM_38950 0fb3c65f90ca333877cb4cc812ade5d4 569 Gene3D G3DSA:3.20.20.80 230 568 9.1E-83 T 13-10-2018 RAM_38950 0fb3c65f90ca333877cb4cc812ade5d4 569 Gene3D G3DSA:2.60.120.260 9 133 4.7E-24 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_46390 c93a7488bfdafb51ba5141e46b9a280b 368 Pfam PF13576 Pentapeptide repeats (9 copies) 281 326 1.7E-6 T 13-10-2018 IPR001646 Pentapeptide repeat RAM_46390 c93a7488bfdafb51ba5141e46b9a280b 368 Gene3D G3DSA:2.160.20.100 173 341 1.7E-5 T 13-10-2018 RAM_23150 dcb60bb9ebf949457a9e940d7b08ca0b 473 SUPERFAMILY SSF50443 328 472 1.26E-25 T 13-10-2018 IPR004216 L-fucose/L-arabinose isomerase, C-terminal RAM_23150 dcb60bb9ebf949457a9e940d7b08ca0b 473 SUPERFAMILY SSF53743 9 331 4.84E-69 T 13-10-2018 IPR009015 L-fucose isomerase, N-terminal/central domain superfamily GO:0005737|GO:0005996|GO:0016861 RAM_23150 dcb60bb9ebf949457a9e940d7b08ca0b 473 Pfam PF02610 L-arabinose isomerase 31 340 1.5E-12 T 13-10-2018 IPR003762 L-arabinose isomerase GO:0008733 KEGG: 00040+5.3.1.4 RAM_23150 dcb60bb9ebf949457a9e940d7b08ca0b 473 ProDom PD018364 ISOMERASE L-ARABINOSE ARABINOSE METABOLISM CARBOHYDRATE CATABOLISM ARAA 7 303 4.0E-7 T 13-10-2018 IPR003762 L-arabinose isomerase GO:0008733 KEGG: 00040+5.3.1.4 RAM_39665 e44449d6c7643956231861fa12a05a49 214 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 6 186 6.0E-48 T 13-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 RAM_39665 e44449d6c7643956231861fa12a05a49 214 Pfam PF01081 KDPG and KHG aldolase 6 183 1.4E-37 T 13-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 RAM_39665 e44449d6c7643956231861fa12a05a49 214 Gene3D G3DSA:3.20.20.70 1 212 1.8E-60 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_39665 e44449d6c7643956231861fa12a05a49 214 SUPERFAMILY SSF51569 4 206 2.01E-49 T 13-10-2018 RAM_14595 122e8ced10872516f391a0b62d56c665 400 Pfam PF03816 Cell envelope-related transcriptional attenuator domain 165 312 4.3E-43 T 13-10-2018 IPR004474 Cell envelope-related transcriptional attenuator domain RAM_14595 122e8ced10872516f391a0b62d56c665 400 TIGRFAM TIGR00350 lytR_cpsA_psr: cell envelope-related function transcriptional attenuator common domain 165 312 1.4E-39 T 13-10-2018 IPR004474 Cell envelope-related transcriptional attenuator domain RAM_14595 122e8ced10872516f391a0b62d56c665 400 Gene3D G3DSA:1.10.260.150 124 395 4.7E-71 T 13-10-2018 RAM_10870 ee49edde02b725d7a2bf123ddc084b56 488 Gene3D G3DSA:3.40.50.720 179 468 8.3E-40 T 13-10-2018 RAM_10870 ee49edde02b725d7a2bf123ddc084b56 488 SUPERFAMILY SSF69572 183 468 1.96E-36 T 13-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 RAM_10870 ee49edde02b725d7a2bf123ddc084b56 488 Pfam PF00899 ThiF family 183 426 7.1E-31 T 13-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 RAM_46460 4a890c7e562b33fbee143407eeb4c987 154 Gene3D G3DSA:3.40.50.360 4 153 2.7E-29 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RAM_46460 4a890c7e562b33fbee143407eeb4c987 154 Pfam PF03358 NADPH-dependent FMN reductase 16 118 1.0E-19 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 RAM_46460 4a890c7e562b33fbee143407eeb4c987 154 SUPERFAMILY SSF52218 10 150 7.09E-26 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RAM_47965 77db9dc67593e20394b7bbaff8b7047d 107 SUPERFAMILY SSF52833 3 107 9.26E-38 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RAM_47965 77db9dc67593e20394b7bbaff8b7047d 107 PRINTS PR00421 Thioredoxin family signature 31 40 1.7E-8 T 13-10-2018 RAM_47965 77db9dc67593e20394b7bbaff8b7047d 107 PRINTS PR00421 Thioredoxin family signature 23 31 1.7E-8 T 13-10-2018 RAM_47965 77db9dc67593e20394b7bbaff8b7047d 107 PRINTS PR00421 Thioredoxin family signature 71 82 1.7E-8 T 13-10-2018 RAM_47965 77db9dc67593e20394b7bbaff8b7047d 107 Pfam PF00085 Thioredoxin 5 104 2.8E-33 T 13-10-2018 IPR013766 Thioredoxin domain GO:0045454 RAM_47965 77db9dc67593e20394b7bbaff8b7047d 107 ProSitePatterns PS00194 Thioredoxin family active site. 24 42 - T 13-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 RAM_47965 77db9dc67593e20394b7bbaff8b7047d 107 Gene3D G3DSA:3.40.30.10 1 106 1.9E-37 T 13-10-2018 RAM_47965 77db9dc67593e20394b7bbaff8b7047d 107 PIRSF PIRSF000077 1 107 5.7E-44 T 13-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 RAM_47965 77db9dc67593e20394b7bbaff8b7047d 107 TIGRFAM TIGR01068 thioredoxin: thioredoxin 8 104 1.9E-38 T 13-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 RAM_15945 33b6d2e109a61dcdf8555f803f44a5ba 292 PRINTS PR00412 Epoxide hydrolase signature 232 248 3.6E-18 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_15945 33b6d2e109a61dcdf8555f803f44a5ba 292 PRINTS PR00412 Epoxide hydrolase signature 42 60 3.6E-18 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_15945 33b6d2e109a61dcdf8555f803f44a5ba 292 PRINTS PR00412 Epoxide hydrolase signature 62 77 3.6E-18 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_15945 33b6d2e109a61dcdf8555f803f44a5ba 292 PRINTS PR00412 Epoxide hydrolase signature 108 121 3.6E-18 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_15945 33b6d2e109a61dcdf8555f803f44a5ba 292 PRINTS PR00412 Epoxide hydrolase signature 122 135 3.6E-18 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_15945 33b6d2e109a61dcdf8555f803f44a5ba 292 PRINTS PR00412 Epoxide hydrolase signature 266 288 3.6E-18 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_15945 33b6d2e109a61dcdf8555f803f44a5ba 292 SUPERFAMILY SSF53474 13 291 4.45E-59 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_15945 33b6d2e109a61dcdf8555f803f44a5ba 292 PRINTS PR00111 Alpha/beta hydrolase fold signature 234 248 2.8E-8 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_15945 33b6d2e109a61dcdf8555f803f44a5ba 292 PRINTS PR00111 Alpha/beta hydrolase fold signature 62 77 2.8E-8 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_15945 33b6d2e109a61dcdf8555f803f44a5ba 292 PRINTS PR00111 Alpha/beta hydrolase fold signature 108 121 2.8E-8 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_15945 33b6d2e109a61dcdf8555f803f44a5ba 292 PRINTS PR00111 Alpha/beta hydrolase fold signature 122 135 2.8E-8 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_15945 33b6d2e109a61dcdf8555f803f44a5ba 292 Pfam PF00561 alpha/beta hydrolase fold 37 272 1.7E-20 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_15945 33b6d2e109a61dcdf8555f803f44a5ba 292 Gene3D G3DSA:3.40.50.1820 11 291 3.2E-60 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_46475 c208f5462c1906cc2a480305be752cdd 293 Pfam PF03476 MOSC N-terminal beta barrel domain 1 116 8.4E-25 T 13-10-2018 IPR005303 MOSC, N-terminal beta barrel KEGG: 00790+2.8.1.9|MetaCyc: PWY-5963 RAM_46475 c208f5462c1906cc2a480305be752cdd 293 SUPERFAMILY SSF141673 5 131 2.88E-27 T 13-10-2018 RAM_46475 c208f5462c1906cc2a480305be752cdd 293 Pfam PF03473 MOSC domain 139 263 2.0E-31 T 13-10-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 RAM_46475 c208f5462c1906cc2a480305be752cdd 293 SUPERFAMILY SSF50800 1 266 6.98E-19 T 13-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily RAM_22135 49fb4ee29d2e8199c2edc107b37f4767 335 SUPERFAMILY SSF47413 2 60 3.1E-15 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_22135 49fb4ee29d2e8199c2edc107b37f4767 335 Gene3D G3DSA:3.40.50.2300 56 308 7.1E-43 T 13-10-2018 RAM_22135 49fb4ee29d2e8199c2edc107b37f4767 335 Gene3D G3DSA:3.40.50.2300 160 291 7.1E-43 T 13-10-2018 RAM_22135 49fb4ee29d2e8199c2edc107b37f4767 335 Pfam PF13377 Periplasmic binding protein-like domain 168 330 2.5E-30 T 13-10-2018 RAM_22135 49fb4ee29d2e8199c2edc107b37f4767 335 SMART SM00354 1 71 3.5E-21 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_22135 49fb4ee29d2e8199c2edc107b37f4767 335 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 47 1.0E-14 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_22135 49fb4ee29d2e8199c2edc107b37f4767 335 Gene3D G3DSA:1.10.260.40 1 55 5.6E-20 T 13-10-2018 RAM_22135 49fb4ee29d2e8199c2edc107b37f4767 335 SUPERFAMILY SSF53822 58 324 3.64E-36 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_35225 ca97ac5e050914c021d8c20c08d739f7 268 Pfam PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain 12 148 2.2E-26 T 13-10-2018 IPR024344 Mycothiol-dependent maleylpyruvate isomerase, metal-binding domain GO:0046872 RAM_35225 ca97ac5e050914c021d8c20c08d739f7 268 TIGRFAM TIGR03084 TIGR03084: TIGR03084 family protein 7 258 8.0E-94 T 13-10-2018 IPR017518 Conserved hypothetical protein CHP03084 RAM_35225 ca97ac5e050914c021d8c20c08d739f7 268 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 11 225 1.7E-42 T 13-10-2018 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type RAM_35225 ca97ac5e050914c021d8c20c08d739f7 268 SUPERFAMILY SSF109854 3 153 4.03E-26 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_35225 ca97ac5e050914c021d8c20c08d739f7 268 Gene3D G3DSA:1.20.120.450 3 151 3.1E-14 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_35225 ca97ac5e050914c021d8c20c08d739f7 268 Pfam PF08608 Wyosine base formation 184 231 5.0E-7 T 13-10-2018 IPR013917 tRNA wybutosine-synthesis MetaCyc: PWY-7285|MetaCyc: PWY-7286 RAM_45640 f4747a2929d8f51b68aa0b3370ab2e4b 118 Gene3D G3DSA:3.30.70.1060 1 115 3.9E-33 T 13-10-2018 RAM_45640 f4747a2929d8f51b68aa0b3370ab2e4b 118 Pfam PF03795 YCII-related domain 2 111 1.7E-19 T 13-10-2018 IPR005545 YCII-related RAM_45640 f4747a2929d8f51b68aa0b3370ab2e4b 118 SUPERFAMILY SSF54909 2 112 1.77E-22 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_22775 a247fa9ce803aeb7d24846df0b27240a 651 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 10 179 7.7E-33 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 RAM_22775 a247fa9ce803aeb7d24846df0b27240a 651 SMART SM00889 452 569 4.6E-52 T 13-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 RAM_22775 a247fa9ce803aeb7d24846df0b27240a 651 SMART SM00838 571 651 3.1E-25 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like RAM_22775 a247fa9ce803aeb7d24846df0b27240a 651 PRINTS PR00315 GTP-binding elongation factor signature 93 104 1.3E-15 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_22775 a247fa9ce803aeb7d24846df0b27240a 651 PRINTS PR00315 GTP-binding elongation factor signature 57 65 1.3E-15 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_22775 a247fa9ce803aeb7d24846df0b27240a 651 PRINTS PR00315 GTP-binding elongation factor signature 77 87 1.3E-15 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_22775 a247fa9ce803aeb7d24846df0b27240a 651 PRINTS PR00315 GTP-binding elongation factor signature 129 138 1.3E-15 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_22775 a247fa9ce803aeb7d24846df0b27240a 651 PRINTS PR00315 GTP-binding elongation factor signature 11 24 1.3E-15 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_22775 a247fa9ce803aeb7d24846df0b27240a 651 Gene3D G3DSA:2.40.30.10 273 372 2.1E-27 T 13-10-2018 RAM_22775 a247fa9ce803aeb7d24846df0b27240a 651 Pfam PF00009 Elongation factor Tu GTP binding domain 8 266 2.7E-60 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAM_22775 a247fa9ce803aeb7d24846df0b27240a 651 Gene3D G3DSA:3.40.50.300 1 272 6.7E-97 T 13-10-2018 RAM_22775 a247fa9ce803aeb7d24846df0b27240a 651 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 50 65 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site RAM_22775 a247fa9ce803aeb7d24846df0b27240a 651 Gene3D G3DSA:3.30.70.240 575 645 7.4E-69 T 13-10-2018 RAM_22775 a247fa9ce803aeb7d24846df0b27240a 651 Pfam PF03764 Elongation factor G, domain IV 451 568 9.8E-41 T 13-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 RAM_22775 a247fa9ce803aeb7d24846df0b27240a 651 TIGRFAM TIGR00484 EF-G: translation elongation factor G 2 651 3.0E-211 T 13-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 RAM_22775 a247fa9ce803aeb7d24846df0b27240a 651 Pfam PF14492 Elongation Factor G, domain II 378 449 4.2E-26 T 13-10-2018 RAM_22775 a247fa9ce803aeb7d24846df0b27240a 651 Gene3D G3DSA:3.30.70.870 378 455 1.3E-27 T 13-10-2018 RAM_22775 a247fa9ce803aeb7d24846df0b27240a 651 SUPERFAMILY SSF54980 571 651 3.96E-20 T 13-10-2018 IPR035647 EF-G domain III/V-like RAM_22775 a247fa9ce803aeb7d24846df0b27240a 651 SUPERFAMILY SSF50447 250 373 1.08E-26 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RAM_22775 a247fa9ce803aeb7d24846df0b27240a 651 Pfam PF03144 Elongation factor Tu domain 2 298 362 2.0E-11 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 RAM_22775 a247fa9ce803aeb7d24846df0b27240a 651 Gene3D G3DSA:3.30.230.10 456 651 7.4E-69 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RAM_22775 a247fa9ce803aeb7d24846df0b27240a 651 Pfam PF00679 Elongation factor G C-terminus 571 651 5.2E-20 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like RAM_22775 a247fa9ce803aeb7d24846df0b27240a 651 SUPERFAMILY SSF54211 454 566 3.29E-32 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RAM_22775 a247fa9ce803aeb7d24846df0b27240a 651 SUPERFAMILY SSF52540 7 266 4.06E-85 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_22775 a247fa9ce803aeb7d24846df0b27240a 651 SUPERFAMILY SSF54980 378 453 1.91E-20 T 13-10-2018 IPR035647 EF-G domain III/V-like RAM_43680 f4e054d81cf22ddaa55e2f7f0bed4413 306 Pfam PF07732 Multicopper oxidase 55 93 1.8E-5 T 13-10-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 RAM_43680 f4e054d81cf22ddaa55e2f7f0bed4413 306 Gene3D G3DSA:2.60.40.420 15 120 1.1E-16 T 13-10-2018 IPR008972 Cupredoxin RAM_43680 f4e054d81cf22ddaa55e2f7f0bed4413 306 SUPERFAMILY SSF49503 28 91 4.22E-6 T 13-10-2018 IPR008972 Cupredoxin RAM_43680 f4e054d81cf22ddaa55e2f7f0bed4413 306 Gene3D G3DSA:2.60.40.420 121 264 6.7E-40 T 13-10-2018 IPR008972 Cupredoxin RAM_43680 f4e054d81cf22ddaa55e2f7f0bed4413 306 SUPERFAMILY SSF49503 136 262 3.39E-13 T 13-10-2018 IPR008972 Cupredoxin RAM_20175 4a571ef654788abb92f532acc804b453 226 Gene3D G3DSA:3.90.550.10 3 220 1.0E-16 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_20175 4a571ef654788abb92f532acc804b453 226 SUPERFAMILY SSF53448 5 197 8.56E-16 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_26190 8601a1d0f1f83fa08e7c633671817a89 388 Pfam PF04892 VanZ like family 49 187 5.2E-19 T 13-10-2018 IPR006976 VanZ-like RAM_26190 8601a1d0f1f83fa08e7c633671817a89 388 Pfam PF06271 RDD family 211 358 5.9E-11 T 13-10-2018 IPR010432 RDD RAM_39515 c8369be014f66594ec1f593e14b2bd09 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 9.1E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_39515 c8369be014f66594ec1f593e14b2bd09 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 9.1E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_39515 c8369be014f66594ec1f593e14b2bd09 199 SUPERFAMILY SSF48498 85 195 2.31E-5 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_39515 c8369be014f66594ec1f593e14b2bd09 199 ProSitePatterns PS01081 TetR-type HTH domain signature. 30 61 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RAM_39515 c8369be014f66594ec1f593e14b2bd09 199 SUPERFAMILY SSF46689 5 89 3.33E-20 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_39515 c8369be014f66594ec1f593e14b2bd09 199 Gene3D G3DSA:1.10.357.10 2 199 3.4E-45 T 13-10-2018 RAM_39515 c8369be014f66594ec1f593e14b2bd09 199 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 64 1.4E-16 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_11640 047b7a4bc1bb322e68c293d194b00fa3 55 Pfam PF04149 Domain of unknown function (DUF397) 5 55 3.1E-18 T 13-10-2018 IPR007278 Domain of unknown function DUF397 RAM_11555 00e2f2daa82d7ea3fa2d7d1a6c5930de 205 Pfam PF00117 Glutamine amidotransferase class-I 3 201 1.7E-18 T 13-10-2018 IPR017926 Glutamine amidotransferase RAM_11555 00e2f2daa82d7ea3fa2d7d1a6c5930de 205 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 1 204 29.31 T 13-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 RAM_11555 00e2f2daa82d7ea3fa2d7d1a6c5930de 205 PIRSF PIRSF000495 1 205 1.9E-62 T 13-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 RAM_11555 00e2f2daa82d7ea3fa2d7d1a6c5930de 205 SUPERFAMILY SSF52317 1 202 2.44E-53 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_11555 00e2f2daa82d7ea3fa2d7d1a6c5930de 205 Gene3D G3DSA:3.40.50.880 1 204 1.4E-68 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_11555 00e2f2daa82d7ea3fa2d7d1a6c5930de 205 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 1 203 2.9E-63 T 13-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 RAM_18340 9c25e629eb6cd2866b050e195f550c22 134 SUPERFAMILY SSF52091 19 127 5.89E-18 T 13-10-2018 IPR036513 STAS domain superfamily RAM_18340 9c25e629eb6cd2866b050e195f550c22 134 Pfam PF01740 STAS domain 21 114 4.8E-12 T 13-10-2018 IPR002645 STAS domain RAM_18340 9c25e629eb6cd2866b050e195f550c22 134 Gene3D G3DSA:3.30.750.24 16 128 2.0E-24 T 13-10-2018 IPR036513 STAS domain superfamily RAM_18340 9c25e629eb6cd2866b050e195f550c22 134 TIGRFAM TIGR00377 ant_ant_sig: anti-anti-sigma factor 19 118 1.5E-16 T 13-10-2018 IPR003658 Anti-sigma factor antagonist GO:0006355|GO:0045152 RAM_12560 33ca152eecfa4ba8054c101cfdb7b17f 295 Gene3D G3DSA:3.10.129.90 17 294 2.3E-103 T 13-10-2018 RAM_12560 33ca152eecfa4ba8054c101cfdb7b17f 295 SUPERFAMILY SSF54637 130 293 9.5E-48 T 13-10-2018 IPR029069 HotDog domain superfamily RAM_12560 33ca152eecfa4ba8054c101cfdb7b17f 295 Pfam PF13622 Thioesterase-like superfamily 43 291 6.4E-60 T 13-10-2018 RAM_12560 33ca152eecfa4ba8054c101cfdb7b17f 295 SUPERFAMILY SSF54637 18 128 1.17E-41 T 13-10-2018 IPR029069 HotDog domain superfamily RAM_39545 33831e84b895548eefb3fe5875ea28e6 292 Pfam PF06719 AraC-type transcriptional regulator N-terminus 21 166 9.0E-44 T 13-10-2018 IPR009594 Transcription regulator HTH, AraC, N-terminal RAM_39545 33831e84b895548eefb3fe5875ea28e6 292 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 232 274 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RAM_39545 33831e84b895548eefb3fe5875ea28e6 292 SUPERFAMILY SSF46689 180 229 3.67E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_39545 33831e84b895548eefb3fe5875ea28e6 292 Gene3D G3DSA:1.10.10.60 179 283 1.3E-27 T 13-10-2018 RAM_39545 33831e84b895548eefb3fe5875ea28e6 292 SUPERFAMILY SSF46689 231 280 9.41E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_39545 33831e84b895548eefb3fe5875ea28e6 292 Pfam PF12833 Helix-turn-helix domain 201 276 2.8E-18 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_39545 33831e84b895548eefb3fe5875ea28e6 292 SMART SM00342 195 278 5.1E-23 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_24225 ae953be9bcede6f0f844d5e8552ad2c7 353 SUPERFAMILY SSF53383 4 346 1.17E-96 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_24225 ae953be9bcede6f0f844d5e8552ad2c7 353 Pfam PF01212 Beta-eliminating lyase 6 290 8.3E-79 T 13-10-2018 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 Reactome: R-HSA-6783984 RAM_24225 ae953be9bcede6f0f844d5e8552ad2c7 353 PIRSF PIRSF017617 1 353 1.3E-111 T 13-10-2018 IPR023603 Threonine aldolase RAM_24225 ae953be9bcede6f0f844d5e8552ad2c7 353 Gene3D G3DSA:3.90.1150.10 252 348 1.1E-23 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_24225 ae953be9bcede6f0f844d5e8552ad2c7 353 Gene3D G3DSA:3.40.640.10 1 251 1.3E-81 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_47905 d70ce4c310ec749c4e1c356f77bfab52 629 Pfam PF14021 Tuberculosis necrotizing toxin 544 628 1.4E-16 T 13-10-2018 IPR025331 Tuberculosis necrotizing toxin KEGG: 00760+3.2.2.5 RAM_47905 d70ce4c310ec749c4e1c356f77bfab52 629 SUPERFAMILY SSF160424 140 276 3.14E-14 T 13-10-2018 IPR036170 Probable antitoxin YezG superfamily RAM_25750 d189757474929a7faa015074385b908f 205 Gene3D G3DSA:1.10.443.10 6 190 1.7E-23 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 RAM_25750 d189757474929a7faa015074385b908f 205 SUPERFAMILY SSF56349 56 185 1.12E-18 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RAM_25750 d189757474929a7faa015074385b908f 205 Pfam PF00589 Phage integrase family 6 182 2.5E-14 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RAM_47960 3c5388b4b40093cbafd5663936984848 297 Gene3D G3DSA:3.50.50.60 85 207 4.6E-104 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_47960 3c5388b4b40093cbafd5663936984848 297 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 1 273 3.6E-105 T 13-10-2018 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00450+1.8.1.9 RAM_47960 3c5388b4b40093cbafd5663936984848 297 SUPERFAMILY SSF51905 1 273 8.13E-42 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_47960 3c5388b4b40093cbafd5663936984848 297 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 262 6.5E-38 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAM_47960 3c5388b4b40093cbafd5663936984848 297 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 29 39 3.5E-61 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAM_47960 3c5388b4b40093cbafd5663936984848 297 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 8 23 3.5E-61 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAM_47960 3c5388b4b40093cbafd5663936984848 297 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 163 179 3.5E-61 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAM_47960 3c5388b4b40093cbafd5663936984848 297 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 74 82 3.5E-61 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAM_47960 3c5388b4b40093cbafd5663936984848 297 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 236 254 3.5E-61 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAM_47960 3c5388b4b40093cbafd5663936984848 297 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 96 108 3.5E-61 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAM_47960 3c5388b4b40093cbafd5663936984848 297 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 201 222 3.5E-61 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAM_47960 3c5388b4b40093cbafd5663936984848 297 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 111 135 3.5E-61 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAM_47960 3c5388b4b40093cbafd5663936984848 297 Gene3D G3DSA:3.50.50.60 1 267 4.6E-104 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_47960 3c5388b4b40093cbafd5663936984848 297 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 115 133 1.6E-20 T 13-10-2018 RAM_47960 3c5388b4b40093cbafd5663936984848 297 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 73 91 1.6E-20 T 13-10-2018 RAM_47960 3c5388b4b40093cbafd5663936984848 297 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 199 215 1.6E-20 T 13-10-2018 RAM_47960 3c5388b4b40093cbafd5663936984848 297 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 226 248 1.6E-20 T 13-10-2018 RAM_22340 f3fdf5a66e35a2e36bab44347428ff39 346 SMART SM00354 19 89 5.7E-27 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_22340 f3fdf5a66e35a2e36bab44347428ff39 346 SUPERFAMILY SSF47413 19 77 1.69E-18 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_22340 f3fdf5a66e35a2e36bab44347428ff39 346 Pfam PF00356 Bacterial regulatory proteins, lacI family 22 66 8.3E-18 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_22340 f3fdf5a66e35a2e36bab44347428ff39 346 Gene3D G3DSA:3.40.50.2300 177 338 2.5E-75 T 13-10-2018 RAM_22340 f3fdf5a66e35a2e36bab44347428ff39 346 Gene3D G3DSA:3.40.50.2300 96 334 2.5E-75 T 13-10-2018 RAM_22340 f3fdf5a66e35a2e36bab44347428ff39 346 ProSitePatterns PS00356 LacI-type HTH domain signature. 22 40 - T 13-10-2018 RAM_22340 f3fdf5a66e35a2e36bab44347428ff39 346 SUPERFAMILY SSF53822 76 337 1.99E-58 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_22340 f3fdf5a66e35a2e36bab44347428ff39 346 Gene3D G3DSA:1.10.260.40 15 76 3.9E-24 T 13-10-2018 RAM_22340 f3fdf5a66e35a2e36bab44347428ff39 346 Pfam PF13377 Periplasmic binding protein-like domain 186 343 1.0E-36 T 13-10-2018 RAM_37860 181c4c31e1cc8759a36d991ee49352d1 500 SUPERFAMILY SSF53850 20 382 8.14E-54 T 13-10-2018 RAM_37860 181c4c31e1cc8759a36d991ee49352d1 500 Pfam PF12849 PBP superfamily domain 15 344 3.0E-37 T 13-10-2018 IPR024370 PBP domain RAM_37860 181c4c31e1cc8759a36d991ee49352d1 500 Gene3D G3DSA:3.40.190.10 20 361 2.2E-68 T 13-10-2018 RAM_37860 181c4c31e1cc8759a36d991ee49352d1 500 Gene3D G3DSA:3.40.190.10 101 305 2.2E-68 T 13-10-2018 RAM_37245 d15dce9c29183db6f59193b811c109a7 307 Pfam PF01261 Xylose isomerase-like TIM barrel 48 231 1.8E-18 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain RAM_37245 d15dce9c29183db6f59193b811c109a7 307 SUPERFAMILY SSF51658 33 296 1.12E-35 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily RAM_37245 d15dce9c29183db6f59193b811c109a7 307 Gene3D G3DSA:3.20.20.150 9 296 1.8E-45 T 13-10-2018 RAM_23735 16c740166b58e3c8808035b31740bfa3 636 Pfam PF00326 Prolyl oligopeptidase family 418 623 1.6E-44 T 13-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 RAM_23735 16c740166b58e3c8808035b31740bfa3 636 SUPERFAMILY SSF69304 82 331 6.02E-7 T 13-10-2018 RAM_23735 16c740166b58e3c8808035b31740bfa3 636 Gene3D G3DSA:3.40.50.1820 358 636 1.5E-72 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_23735 16c740166b58e3c8808035b31740bfa3 636 SUPERFAMILY SSF53474 366 622 4.88E-57 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_15820 f98a23272cce2ef8f772cefe1ca9b267 258 Pfam PF01261 Xylose isomerase-like TIM barrel 22 207 4.5E-23 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain RAM_15820 f98a23272cce2ef8f772cefe1ca9b267 258 Gene3D G3DSA:3.20.20.150 4 239 4.3E-43 T 13-10-2018 RAM_15820 f98a23272cce2ef8f772cefe1ca9b267 258 SUPERFAMILY SSF51658 5 254 5.11E-37 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily RAM_37120 53e59db4d808580b57c1f6aa73345dee 51 Pfam PF00676 Dehydrogenase E1 component 5 45 2.0E-6 T 13-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 RAM_37120 53e59db4d808580b57c1f6aa73345dee 51 SUPERFAMILY SSF52518 3 46 7.62E-9 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_37120 53e59db4d808580b57c1f6aa73345dee 51 Gene3D G3DSA:3.40.50.970 1 49 1.1E-9 T 13-10-2018 RAM_28420 3778b9d242c6ea77cb25613f6e309e3e 222 Pfam PF00196 Bacterial regulatory proteins, luxR family 156 209 1.3E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_28420 3778b9d242c6ea77cb25613f6e309e3e 222 SMART SM00448 8 121 7.5E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_28420 3778b9d242c6ea77cb25613f6e309e3e 222 Pfam PF00072 Response regulator receiver domain 10 121 7.0E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_28420 3778b9d242c6ea77cb25613f6e309e3e 222 SMART SM00421 153 210 4.0E-17 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_28420 3778b9d242c6ea77cb25613f6e309e3e 222 Gene3D G3DSA:3.40.50.12740 8 213 2.1E-59 T 13-10-2018 RAM_28420 3778b9d242c6ea77cb25613f6e309e3e 222 SUPERFAMILY SSF52172 8 133 4.55E-29 T 13-10-2018 IPR011006 CheY-like superfamily RAM_28420 3778b9d242c6ea77cb25613f6e309e3e 222 SUPERFAMILY SSF46894 148 211 2.72E-15 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_28420 3778b9d242c6ea77cb25613f6e309e3e 222 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 156 170 9.0E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_28420 3778b9d242c6ea77cb25613f6e309e3e 222 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 170 186 9.0E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_28420 3778b9d242c6ea77cb25613f6e309e3e 222 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 186 198 9.0E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_10975 ce626802f84124c554bbb5363c445f85 489 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 16 428 6.1E-69 T 13-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 RAM_10975 ce626802f84124c554bbb5363c445f85 489 Pfam PF07690 Major Facilitator Superfamily 281 478 1.6E-17 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_10975 ce626802f84124c554bbb5363c445f85 489 Pfam PF07690 Major Facilitator Superfamily 18 246 1.5E-35 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_10975 ce626802f84124c554bbb5363c445f85 489 PRINTS PR01036 Tetracycline resistance protein TetB signature 15 39 1.4E-5 T 13-10-2018 RAM_10975 ce626802f84124c554bbb5363c445f85 489 PRINTS PR01036 Tetracycline resistance protein TetB signature 136 160 1.4E-5 T 13-10-2018 RAM_10975 ce626802f84124c554bbb5363c445f85 489 Gene3D G3DSA:1.20.1250.20 268 473 5.9E-22 T 13-10-2018 RAM_10975 ce626802f84124c554bbb5363c445f85 489 SUPERFAMILY SSF103473 6 469 7.98E-68 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_10975 ce626802f84124c554bbb5363c445f85 489 Gene3D G3DSA:1.20.1720.10 13 221 1.3E-48 T 13-10-2018 RAM_46580 8da76723c418531c329c35ffc1e626f6 252 Pfam PF14011 EspG family 6 247 1.4E-65 T 13-10-2018 IPR025734 EspG family RAM_19985 cea2b862ac435c95dba0cbc31cd5db95 310 Gene3D G3DSA:3.40.1190.20 4 310 3.9E-69 T 13-10-2018 IPR029056 Ribokinase-like RAM_19985 cea2b862ac435c95dba0cbc31cd5db95 310 PIRSF PIRSF000535 2 309 1.3E-54 T 13-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 RAM_19985 cea2b862ac435c95dba0cbc31cd5db95 310 SUPERFAMILY SSF53613 5 286 8.73E-43 T 13-10-2018 IPR029056 Ribokinase-like RAM_19985 cea2b862ac435c95dba0cbc31cd5db95 310 Pfam PF00294 pfkB family carbohydrate kinase 14 281 3.4E-24 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB RAM_19985 cea2b862ac435c95dba0cbc31cd5db95 310 PRINTS PR00990 Ribokinase signature 213 224 2.3E-5 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 RAM_19985 cea2b862ac435c95dba0cbc31cd5db95 310 PRINTS PR00990 Ribokinase signature 34 53 2.3E-5 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 RAM_19985 cea2b862ac435c95dba0cbc31cd5db95 310 PRINTS PR00990 Ribokinase signature 176 191 2.3E-5 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 RAM_45655 4a08e50153eb169728be2b32abdf248f 331 SMART SM00382 33 231 5.0E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_45655 4a08e50153eb169728be2b32abdf248f 331 Pfam PF00005 ABC transporter 25 182 3.5E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_45655 4a08e50153eb169728be2b32abdf248f 331 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 234 299 1.1E-17 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RAM_45655 4a08e50153eb169728be2b32abdf248f 331 SUPERFAMILY SSF52540 33 312 4.5E-64 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_45655 4a08e50153eb169728be2b32abdf248f 331 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_45655 4a08e50153eb169728be2b32abdf248f 331 Gene3D G3DSA:3.40.50.300 1 321 3.9E-92 T 13-10-2018 RAM_45655 4a08e50153eb169728be2b32abdf248f 331 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 232 317 4.6E-21 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RAM_04095 8495bec348583f1ff11711df13e1b443 107 Gene3D G3DSA:3.40.50.280 1 72 1.8E-10 T 13-10-2018 RAM_04095 8495bec348583f1ff11711df13e1b443 107 SUPERFAMILY SSF52242 22 62 1.06E-8 T 13-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 RAM_04095 8495bec348583f1ff11711df13e1b443 107 Pfam PF02310 B12 binding domain 13 60 1.4E-6 T 13-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 RAM_41585 8e00ffbd2f897c3354a2d683e06453e6 157 Pfam PF01037 Lrp/AsnC ligand binding domain 78 141 1.5E-14 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RAM_41585 8e00ffbd2f897c3354a2d683e06453e6 157 SUPERFAMILY SSF54909 65 149 3.62E-18 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_41585 8e00ffbd2f897c3354a2d683e06453e6 157 SMART SM00344 5 111 1.2E-20 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RAM_41585 8e00ffbd2f897c3354a2d683e06453e6 157 Gene3D G3DSA:1.10.10.10 3 54 1.1E-9 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_41585 8e00ffbd2f897c3354a2d683e06453e6 157 Gene3D G3DSA:3.30.70.920 58 145 4.7E-20 T 13-10-2018 RAM_41585 8e00ffbd2f897c3354a2d683e06453e6 157 Pfam PF13404 AsnC-type helix-turn-helix domain 5 45 9.0E-8 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_41585 8e00ffbd2f897c3354a2d683e06453e6 157 SUPERFAMILY SSF46785 4 78 1.78E-10 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_41585 8e00ffbd2f897c3354a2d683e06453e6 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 21 32 3.7E-9 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_41585 8e00ffbd2f897c3354a2d683e06453e6 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 32 51 3.7E-9 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_41585 8e00ffbd2f897c3354a2d683e06453e6 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 5 21 3.7E-9 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_31450 e987eb545360d01de01283d40dfec8f7 520 SUPERFAMILY SSF50494 6 187 2.33E-12 T 13-10-2018 IPR009003 Peptidase S1, PA clan RAM_31450 e987eb545360d01de01283d40dfec8f7 520 Pfam PF13365 Trypsin-like peptidase domain 10 158 5.9E-11 T 13-10-2018 RAM_31450 e987eb545360d01de01283d40dfec8f7 520 Gene3D G3DSA:2.40.10.120 4 182 2.9E-6 T 13-10-2018 RAM_25485 5d03e75648c84058e0e5c8bf886c40f2 45 SUPERFAMILY SSF57829 1 44 1.83E-6 T 13-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 RAM_25485 5d03e75648c84058e0e5c8bf886c40f2 45 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 39 5.1E-6 T 13-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_25485 5d03e75648c84058e0e5c8bf886c40f2 45 Pfam PF01783 Ribosomal L32p protein family 2 43 1.2E-7 T 13-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_12095 e777982aacd625002a5b9d73fd59543c 227 SUPERFAMILY SSF46689 12 78 1.44E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_12095 e777982aacd625002a5b9d73fd59543c 227 Gene3D G3DSA:1.10.357.10 69 225 4.3E-38 T 13-10-2018 RAM_12095 e777982aacd625002a5b9d73fd59543c 227 Pfam PF02909 Tetracyclin repressor, C-terminal all-alpha domain 81 222 6.7E-22 T 13-10-2018 IPR004111 Tetracycline transcriptional regulator, TetR, C-terminal GO:0045892 RAM_12095 e777982aacd625002a5b9d73fd59543c 227 SUPERFAMILY SSF48498 83 223 1.56E-22 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_12095 e777982aacd625002a5b9d73fd59543c 227 Gene3D G3DSA:1.10.10.60 1 68 1.1E-25 T 13-10-2018 RAM_12095 e777982aacd625002a5b9d73fd59543c 227 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 67 1.5E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_30655 e8a3de0096af8ca5bdff09359769350b 268 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 123 151 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_30655 e8a3de0096af8ca5bdff09359769350b 268 Gene3D G3DSA:3.40.50.720 2 230 3.1E-57 T 13-10-2018 RAM_30655 e8a3de0096af8ca5bdff09359769350b 268 SUPERFAMILY SSF51735 1 221 7.32E-40 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_30655 e8a3de0096af8ca5bdff09359769350b 268 Pfam PF01370 NAD dependent epimerase/dehydratase family 6 164 9.1E-21 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 RAM_16870 3543f32749b33e8fa2a4518cc3571642 424 Pfam PF01547 Bacterial extracellular solute-binding protein 41 335 2.9E-36 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein RAM_16870 3543f32749b33e8fa2a4518cc3571642 424 Gene3D G3DSA:3.40.190.10 50 378 2.3E-72 T 13-10-2018 RAM_16870 3543f32749b33e8fa2a4518cc3571642 424 Gene3D G3DSA:3.40.190.10 146 415 2.3E-72 T 13-10-2018 RAM_16870 3543f32749b33e8fa2a4518cc3571642 424 SUPERFAMILY SSF53850 18 421 1.36E-67 T 13-10-2018 RAM_30030 3b6597ca5506af4a5931e2e761bcb432 131 Gene3D G3DSA:1.10.10.10 12 126 2.3E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_30030 3b6597ca5506af4a5931e2e761bcb432 131 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 77 1.1E-13 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_30030 3b6597ca5506af4a5931e2e761bcb432 131 SUPERFAMILY SSF46785 8 80 8.33E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_30030 3b6597ca5506af4a5931e2e761bcb432 131 SMART SM00345 18 77 5.6E-11 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_44510 89dfa53dbd7ab534edb356d386be6d45 424 Gene3D G3DSA:3.40.50.1820 23 259 7.0E-46 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_44510 89dfa53dbd7ab534edb356d386be6d45 424 ProSitePatterns PS00708 Prolyl endopeptidase family serine active site. 98 128 - T 13-10-2018 IPR002471 Peptidase S9, serine active site GO:0004252|GO:0006508 RAM_44510 89dfa53dbd7ab534edb356d386be6d45 424 Pfam PF12146 Serine aminopeptidase, S33 47 148 1.8E-8 T 13-10-2018 IPR022742 Serine aminopeptidase, S33 RAM_44510 89dfa53dbd7ab534edb356d386be6d45 424 SUPERFAMILY SSF53474 7 249 9.48E-44 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_15960 63592102abe01d3ca3a307eb0908eb8c 394 Gene3D G3DSA:2.40.110.10 112 222 6.3E-37 T 13-10-2018 RAM_15960 63592102abe01d3ca3a307eb0908eb8c 394 Gene3D G3DSA:1.10.540.10 2 107 4.6E-17 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_15960 63592102abe01d3ca3a307eb0908eb8c 394 SUPERFAMILY SSF56645 12 231 2.23E-63 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_15960 63592102abe01d3ca3a307eb0908eb8c 394 SUPERFAMILY SSF47203 218 377 5.76E-17 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_15960 63592102abe01d3ca3a307eb0908eb8c 394 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 27 108 6.7E-10 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_15960 63592102abe01d3ca3a307eb0908eb8c 394 Gene3D G3DSA:1.20.140.10 223 382 2.7E-29 T 13-10-2018 RAM_15960 63592102abe01d3ca3a307eb0908eb8c 394 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 218 375 9.7E-18 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_15960 63592102abe01d3ca3a307eb0908eb8c 394 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 112 204 1.4E-19 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RAM_19760 bc1832238a4b11fc77d9b9ced563a53e 305 Pfam PF00809 Pterin binding enzyme 22 262 1.1E-70 T 13-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_19760 bc1832238a4b11fc77d9b9ced563a53e 305 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 21 276 1.8E-81 T 13-10-2018 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 RAM_19760 bc1832238a4b11fc77d9b9ced563a53e 305 Gene3D G3DSA:3.20.20.20 2 284 6.2E-91 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_19760 bc1832238a4b11fc77d9b9ced563a53e 305 SUPERFAMILY SSF51717 10 279 2.09E-83 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_35570 6fd71624c0262a1506a21397c4ceb2b6 148 Pfam PF13673 Acetyltransferase (GNAT) domain 47 125 9.2E-13 T 13-10-2018 IPR000182 GNAT domain RAM_35570 6fd71624c0262a1506a21397c4ceb2b6 148 SUPERFAMILY SSF55729 1 132 2.48E-21 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_35570 6fd71624c0262a1506a21397c4ceb2b6 148 Gene3D G3DSA:3.40.630.30 1 135 1.6E-21 T 13-10-2018 RAM_34935 f4e6af6f5c8a273c155835ca549ff163 206 Gene3D G3DSA:1.10.357.10 8 179 1.8E-40 T 13-10-2018 RAM_34935 f4e6af6f5c8a273c155835ca549ff163 206 Pfam PF00440 Bacterial regulatory proteins, tetR family 24 63 9.2E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_34935 f4e6af6f5c8a273c155835ca549ff163 206 SUPERFAMILY SSF46689 11 90 4.74E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_47915 6c31b0d9f70f08763c6a0e0eae4ba23f 435 SUPERFAMILY SSF55874 346 434 3.97E-12 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_47915 6c31b0d9f70f08763c6a0e0eae4ba23f 435 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 346 434 3.0E-6 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_47915 6c31b0d9f70f08763c6a0e0eae4ba23f 435 Gene3D G3DSA:3.30.565.10 305 435 5.5E-19 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_15975 4d12c04a3f6a7e1978d09eb82b3634d2 150 SUPERFAMILY SSF54637 7 147 2.24E-37 T 13-10-2018 IPR029069 HotDog domain superfamily RAM_15975 4d12c04a3f6a7e1978d09eb82b3634d2 150 Pfam PF01575 MaoC like domain 10 119 1.9E-25 T 13-10-2018 IPR002539 MaoC-like dehydratase domain RAM_15975 4d12c04a3f6a7e1978d09eb82b3634d2 150 Gene3D G3DSA:3.10.129.10 1 150 1.2E-48 T 13-10-2018 RAM_15905 f5d5258b17869f961385b40721ca87ab 181 SUPERFAMILY SSF53597 4 153 3.93E-22 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RAM_15905 f5d5258b17869f961385b40721ca87ab 181 Gene3D G3DSA:3.40.430.10 1 170 3.7E-33 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RAM_15905 f5d5258b17869f961385b40721ca87ab 181 Pfam PF01872 RibD C-terminal domain 3 153 8.2E-15 T 13-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 RAM_08985 fa221365bcf8e0a4a14a6460031dd64c 298 Pfam PF13540 Regulator of chromosome condensation (RCC1) repeat 198 226 1.1E-7 T 13-10-2018 RAM_08985 fa221365bcf8e0a4a14a6460031dd64c 298 Pfam PF13540 Regulator of chromosome condensation (RCC1) repeat 159 187 6.8E-6 T 13-10-2018 RAM_08985 fa221365bcf8e0a4a14a6460031dd64c 298 Gene3D G3DSA:2.130.10.30 150 298 8.1E-46 T 13-10-2018 IPR009091 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II RAM_08985 fa221365bcf8e0a4a14a6460031dd64c 298 Gene3D G3DSA:2.130.10.30 3 149 1.8E-35 T 13-10-2018 IPR009091 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II RAM_08985 fa221365bcf8e0a4a14a6460031dd64c 298 SUPERFAMILY SSF50985 24 268 3.49E-40 T 13-10-2018 IPR009091 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II RAM_42510 432ff6ca8edb87e1a42b9213b834b2a3 181 Pfam PF00892 EamA-like transporter family 2 89 5.0E-12 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RAM_42510 432ff6ca8edb87e1a42b9213b834b2a3 181 SUPERFAMILY SSF103481 90 163 1.83E-12 T 13-10-2018 RAM_42510 432ff6ca8edb87e1a42b9213b834b2a3 181 SUPERFAMILY SSF103481 30 89 3.27E-6 T 13-10-2018 RAM_30215 dcbe388554a8793dccfd27aab84aff0b 143 SUPERFAMILY SSF55874 36 140 6.74E-11 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_30215 dcbe388554a8793dccfd27aab84aff0b 143 Gene3D G3DSA:3.30.565.10 13 142 5.3E-30 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_30215 dcbe388554a8793dccfd27aab84aff0b 143 Pfam PF13581 Histidine kinase-like ATPase domain 29 140 2.9E-21 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_25435 5766befec9cbbfd27947dce6606f7ac0 567 Pfam PF00501 AMP-binding enzyme 59 450 1.3E-74 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_25435 5766befec9cbbfd27947dce6606f7ac0 567 Gene3D G3DSA:3.40.50.12780 15 443 1.1E-111 T 13-10-2018 RAM_25435 5766befec9cbbfd27947dce6606f7ac0 567 Pfam PF13193 AMP-binding enzyme C-terminal domain 459 536 2.8E-18 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_25435 5766befec9cbbfd27947dce6606f7ac0 567 SUPERFAMILY SSF56801 12 549 2.22E-129 T 13-10-2018 RAM_25435 5766befec9cbbfd27947dce6606f7ac0 567 Gene3D G3DSA:3.30.300.310 446 550 4.4E-22 T 13-10-2018 RAM_32905 7f4e03d8bcc325aac3a1a1fed914116c 284 Gene3D G3DSA:3.40.50.1820 3 283 6.2E-70 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_32905 7f4e03d8bcc325aac3a1a1fed914116c 284 Pfam PF00561 alpha/beta hydrolase fold 38 268 3.1E-23 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_32905 7f4e03d8bcc325aac3a1a1fed914116c 284 PRINTS PR00111 Alpha/beta hydrolase fold signature 63 78 7.5E-9 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_32905 7f4e03d8bcc325aac3a1a1fed914116c 284 PRINTS PR00111 Alpha/beta hydrolase fold signature 106 119 7.5E-9 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_32905 7f4e03d8bcc325aac3a1a1fed914116c 284 PRINTS PR00111 Alpha/beta hydrolase fold signature 228 242 7.5E-9 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_32905 7f4e03d8bcc325aac3a1a1fed914116c 284 PRINTS PR00111 Alpha/beta hydrolase fold signature 120 133 7.5E-9 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_32905 7f4e03d8bcc325aac3a1a1fed914116c 284 SUPERFAMILY SSF53474 15 283 3.56E-59 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_44695 aec9d5027bbef39658389342d85ff7ae 460 SUPERFAMILY SSF52540 8 438 7.7E-38 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_44695 aec9d5027bbef39658389342d85ff7ae 460 Gene3D G3DSA:3.40.50.300 214 448 2.7E-29 T 13-10-2018 RAM_44695 aec9d5027bbef39658389342d85ff7ae 460 Pfam PF02534 Type IV secretory system Conjugative DNA transfer 36 374 6.4E-25 T 13-10-2018 IPR003688 Type IV secretion system protein TraG/VirD4 GO:0009291|GO:0016020 RAM_01200 6aa5435bd0375c19d50a3d6674d0854c 497 Gene3D G3DSA:1.20.1260.20 109 263 4.0E-7 T 13-10-2018 IPR038332 PPE superfamily RAM_01200 6aa5435bd0375c19d50a3d6674d0854c 497 SUPERFAMILY SSF140453 109 165 9.02E-5 T 13-10-2018 IPR036689 ESAT-6-like superfamily RAM_44670 ca151209f1f8ce76f8465098df662fad 471 SUPERFAMILY SSF55486 262 459 7.69E-38 T 13-10-2018 RAM_44670 ca151209f1f8ce76f8465098df662fad 471 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 314 329 2.8E-5 T 13-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RAM_44670 ca151209f1f8ce76f8465098df662fad 471 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 333 345 2.8E-5 T 13-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RAM_44670 ca151209f1f8ce76f8465098df662fad 471 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 178 193 2.8E-5 T 13-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RAM_44670 ca151209f1f8ce76f8465098df662fad 471 Pfam PF01433 Peptidase family M1 domain 314 452 8.9E-18 T 13-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RAM_44670 ca151209f1f8ce76f8465098df662fad 471 Gene3D G3DSA:2.60.40.1730 59 235 4.1E-21 T 13-10-2018 RAM_44670 ca151209f1f8ce76f8465098df662fad 471 Gene3D G3DSA:1.10.390.60 264 456 8.0E-25 T 13-10-2018 RAM_44670 ca151209f1f8ce76f8465098df662fad 471 SUPERFAMILY SSF63737 47 233 1.57E-28 T 13-10-2018 RAM_03725 26c06ce7476ca1c908feae8e00d9cf8f 512 Gene3D G3DSA:3.30.300.30 405 511 1.2E-30 T 13-10-2018 RAM_03725 26c06ce7476ca1c908feae8e00d9cf8f 512 Gene3D G3DSA:3.40.50.12780 19 403 3.7E-115 T 13-10-2018 RAM_03725 26c06ce7476ca1c908feae8e00d9cf8f 512 Pfam PF00501 AMP-binding enzyme 28 410 5.4E-63 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_03725 26c06ce7476ca1c908feae8e00d9cf8f 512 SUPERFAMILY SSF56801 26 507 1.44E-94 T 13-10-2018 RAM_41605 3dff1f3a7b9fb3041d47527a50448741 1182 SUPERFAMILY SSF140453 102 168 5.1E-5 T 13-10-2018 IPR036689 ESAT-6-like superfamily RAM_36720 84d5d0b6624b2431d9c196f9bd11a05a 320 Gene3D G3DSA:3.90.180.10 22 315 3.8E-62 T 13-10-2018 RAM_36720 84d5d0b6624b2431d9c196f9bd11a05a 320 SMART SM00829 14 317 1.5E-13 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_36720 84d5d0b6624b2431d9c196f9bd11a05a 320 Gene3D G3DSA:3.40.50.720 135 269 3.8E-62 T 13-10-2018 RAM_36720 84d5d0b6624b2431d9c196f9bd11a05a 320 Pfam PF13602 Zinc-binding dehydrogenase 203 315 1.2E-10 T 13-10-2018 RAM_36720 84d5d0b6624b2431d9c196f9bd11a05a 320 SUPERFAMILY SSF50129 5 317 3.2E-29 T 13-10-2018 IPR011032 GroES-like superfamily RAM_36720 84d5d0b6624b2431d9c196f9bd11a05a 320 SUPERFAMILY SSF51735 124 310 1.09E-21 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_36720 84d5d0b6624b2431d9c196f9bd11a05a 320 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 32 93 2.2E-10 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_47030 51754dc28eb7ef8ca635c7da2a846048 52 Pfam PF04149 Domain of unknown function (DUF397) 2 52 2.0E-18 T 13-10-2018 IPR007278 Domain of unknown function DUF397 RAM_11285 4bc9070c0ec5bc67f9e0c6060239863b 727 SUPERFAMILY SSF53056 521 717 3.79E-55 T 13-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 RAM_11285 4bc9070c0ec5bc67f9e0c6060239863b 727 Pfam PF00916 Sulfate permease family 10 356 1.1E-66 T 13-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 RAM_11285 4bc9070c0ec5bc67f9e0c6060239863b 727 Gene3D G3DSA:3.40.1050.10 510 715 1.3E-58 T 13-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 RAM_11285 4bc9070c0ec5bc67f9e0c6060239863b 727 SMART SM00947 545 709 1.2E-59 T 13-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RAM_11285 4bc9070c0ec5bc67f9e0c6060239863b 727 Pfam PF00484 Carbonic anhydrase 552 705 2.6E-43 T 13-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RAM_11285 4bc9070c0ec5bc67f9e0c6060239863b 727 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 599 619 - T 13-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RAM_22635 75ed196c32f6a26f0d48f01ceb2316ad 281 Gene3D G3DSA:3.40.50.12370 1 280 5.7E-78 T 13-10-2018 RAM_22635 75ed196c32f6a26f0d48f01ceb2316ad 281 SUPERFAMILY SSF52402 150 278 3.68E-25 T 13-10-2018 RAM_22635 75ed196c32f6a26f0d48f01ceb2316ad 281 Pfam PF00582 Universal stress protein family 3 138 1.2E-20 T 13-10-2018 IPR006016 UspA RAM_22635 75ed196c32f6a26f0d48f01ceb2316ad 281 Pfam PF00582 Universal stress protein family 150 278 2.3E-22 T 13-10-2018 IPR006016 UspA RAM_22635 75ed196c32f6a26f0d48f01ceb2316ad 281 PRINTS PR01438 Universal stress protein signature 149 167 5.9E-14 T 13-10-2018 IPR006015 Universal stress protein A RAM_22635 75ed196c32f6a26f0d48f01ceb2316ad 281 PRINTS PR01438 Universal stress protein signature 256 278 5.9E-14 T 13-10-2018 IPR006015 Universal stress protein A RAM_22635 75ed196c32f6a26f0d48f01ceb2316ad 281 PRINTS PR01438 Universal stress protein signature 238 250 5.9E-14 T 13-10-2018 IPR006015 Universal stress protein A RAM_22635 75ed196c32f6a26f0d48f01ceb2316ad 281 SUPERFAMILY SSF52402 3 144 4.27E-29 T 13-10-2018 RAM_02345 a3280c6c083756d91cba9b942da21375 249 Hamap MF_01039 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 4 232 42.859 T 13-10-2018 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484 RAM_02345 a3280c6c083756d91cba9b942da21375 249 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 7 134 3.7E-27 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 RAM_02345 a3280c6c083756d91cba9b942da21375 249 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 146 209 8.6E-5 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 RAM_02345 a3280c6c083756d91cba9b942da21375 249 TIGRFAM TIGR01258 pgm_1: phosphoglycerate mutase 1 family 6 249 2.2E-111 T 13-10-2018 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484 RAM_02345 a3280c6c083756d91cba9b942da21375 249 Gene3D G3DSA:3.40.50.1240 3 245 1.7E-82 T 13-10-2018 IPR029033 Histidine phosphatase superfamily RAM_02345 a3280c6c083756d91cba9b942da21375 249 SMART SM00855 6 191 2.9E-23 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 RAM_02345 a3280c6c083756d91cba9b942da21375 249 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 9 18 - T 13-10-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824 RAM_02345 a3280c6c083756d91cba9b942da21375 249 SUPERFAMILY SSF53254 6 224 8.57E-71 T 13-10-2018 IPR029033 Histidine phosphatase superfamily RAM_02345 a3280c6c083756d91cba9b942da21375 249 PIRSF PIRSF000709 5 113 0.001 T 13-10-2018 RAM_02345 a3280c6c083756d91cba9b942da21375 249 PIRSF PIRSF000709 140 216 0.083 T 13-10-2018 RAM_43915 b06811dc5c49d714e9931d6347b5dea2 68 Pfam PF00313 'Cold-shock' DNA-binding domain 4 66 4.8E-28 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RAM_43915 b06811dc5c49d714e9931d6347b5dea2 68 SUPERFAMILY SSF50249 2 66 8.0E-23 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_43915 b06811dc5c49d714e9931d6347b5dea2 68 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 33 - T 13-10-2018 IPR019844 Cold-shock conserved site RAM_43915 b06811dc5c49d714e9931d6347b5dea2 68 SMART SM00357 3 67 1.2E-28 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 RAM_43915 b06811dc5c49d714e9931d6347b5dea2 68 Gene3D G3DSA:2.40.50.140 2 68 1.3E-27 T 13-10-2018 RAM_43915 b06811dc5c49d714e9931d6347b5dea2 68 PIRSF PIRSF002599 1 68 7.7E-23 T 13-10-2018 IPR012156 Cold shock, CspA GO:0003676 RAM_43915 b06811dc5c49d714e9931d6347b5dea2 68 PRINTS PR00050 Cold shock protein signature 24 33 8.6E-18 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RAM_43915 b06811dc5c49d714e9931d6347b5dea2 68 PRINTS PR00050 Cold shock protein signature 4 19 8.6E-18 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RAM_43915 b06811dc5c49d714e9931d6347b5dea2 68 PRINTS PR00050 Cold shock protein signature 39 57 8.6E-18 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RAM_38445 d2bb7ea8d6ab171484936730a4a3e0fb 241 SMART SM00065 28 171 8.9E-7 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_38445 d2bb7ea8d6ab171484936730a4a3e0fb 241 Gene3D G3DSA:1.10.10.10 176 233 6.8E-9 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_38445 d2bb7ea8d6ab171484936730a4a3e0fb 241 Pfam PF13185 GAF domain 27 153 1.0E-10 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_38445 d2bb7ea8d6ab171484936730a4a3e0fb 241 Pfam PF03861 ANTAR domain 176 226 6.1E-16 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 RAM_38445 d2bb7ea8d6ab171484936730a4a3e0fb 241 SMART SM01012 173 228 1.0E-16 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 RAM_38445 d2bb7ea8d6ab171484936730a4a3e0fb 241 Gene3D G3DSA:3.30.450.40 2 175 7.1E-21 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_38445 d2bb7ea8d6ab171484936730a4a3e0fb 241 PIRSF PIRSF036625 1 240 1.2E-49 T 13-10-2018 IPR012074 GAF-ANTAR transcription anti-termination regulator, putative RAM_38445 d2bb7ea8d6ab171484936730a4a3e0fb 241 SUPERFAMILY SSF55781 25 174 2.94E-19 T 13-10-2018 RAM_23945 35c38379ae64a3b5d18d8525bbc6b9cf 391 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 336 345 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RAM_23945 35c38379ae64a3b5d18d8525bbc6b9cf 391 SUPERFAMILY SSF48264 10 384 1.14E-80 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_23945 35c38379ae64a3b5d18d8525bbc6b9cf 391 PRINTS PR00359 B-class P450 signature 334 343 1.3E-50 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_23945 35c38379ae64a3b5d18d8525bbc6b9cf 391 PRINTS PR00359 B-class P450 signature 343 354 1.3E-50 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_23945 35c38379ae64a3b5d18d8525bbc6b9cf 391 PRINTS PR00359 B-class P450 signature 151 166 1.3E-50 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_23945 35c38379ae64a3b5d18d8525bbc6b9cf 391 PRINTS PR00359 B-class P450 signature 313 328 1.3E-50 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_23945 35c38379ae64a3b5d18d8525bbc6b9cf 391 PRINTS PR00359 B-class P450 signature 186 208 1.3E-50 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_23945 35c38379ae64a3b5d18d8525bbc6b9cf 391 PRINTS PR00359 B-class P450 signature 134 150 1.3E-50 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_23945 35c38379ae64a3b5d18d8525bbc6b9cf 391 PRINTS PR00359 B-class P450 signature 285 312 1.3E-50 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_23945 35c38379ae64a3b5d18d8525bbc6b9cf 391 PRINTS PR00359 B-class P450 signature 267 278 1.3E-50 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_23945 35c38379ae64a3b5d18d8525bbc6b9cf 391 PRINTS PR00359 B-class P450 signature 85 96 1.3E-50 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_23945 35c38379ae64a3b5d18d8525bbc6b9cf 391 Gene3D G3DSA:1.10.630.10 1 391 1.6E-112 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_23945 35c38379ae64a3b5d18d8525bbc6b9cf 391 Pfam PF00067 Cytochrome P450 268 364 1.3E-15 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_28010 b2cd1f98e12058aaa9ab20eb71b5a607 95 Gene3D G3DSA:3.30.565.10 1 91 3.0E-19 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_28010 b2cd1f98e12058aaa9ab20eb71b5a607 95 SUPERFAMILY SSF55874 2 90 2.26E-8 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_35450 9d2ab6812e83db61decef80f0ca19aa1 260 SUPERFAMILY SSF53335 15 168 2.06E-13 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_35450 9d2ab6812e83db61decef80f0ca19aa1 260 Gene3D G3DSA:3.40.50.150 14 258 7.5E-42 T 13-10-2018 RAM_35450 9d2ab6812e83db61decef80f0ca19aa1 260 Pfam PF08241 Methyltransferase domain 48 125 1.2E-7 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 RAM_19900 377c8a46f9ee37a8d9c804f8246a79b9 168 Pfam PF06897 Protein of unknown function (DUF1269) 61 159 1.9E-36 T 13-10-2018 IPR009200 Protein of unknown function DUF1269, membrane associated RAM_02710 ed0f6d20262c0d3d164b07fb35fd8ff6 291 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 34 182 9.1E-35 T 13-10-2018 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_02710 ed0f6d20262c0d3d164b07fb35fd8ff6 291 Gene3D G3DSA:1.20.120.1200 22 185 9.7E-45 T 13-10-2018 RAM_01165 a639d70f9fddd7ed0164b6b5392b02e2 456 SUPERFAMILY SSF56176 14 186 1.59E-39 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RAM_01165 a639d70f9fddd7ed0164b6b5392b02e2 456 Pfam PF01565 FAD binding domain 31 156 3.9E-28 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RAM_01165 a639d70f9fddd7ed0164b6b5392b02e2 456 Pfam PF04030 D-arabinono-1,4-lactone oxidase 394 453 2.9E-8 T 13-10-2018 IPR007173 D-arabinono-1,4-lactone oxidase GO:0003885|GO:0016020|GO:0055114 RAM_01165 a639d70f9fddd7ed0164b6b5392b02e2 456 Gene3D G3DSA:3.30.43.10 27 68 6.4E-29 T 13-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 RAM_01165 a639d70f9fddd7ed0164b6b5392b02e2 456 Gene3D G3DSA:3.30.465.10 69 191 6.4E-29 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 RAM_15390 1f1e4c40967b780f7b5da2357bcc338d 684 Pfam PF00912 Transglycosylase 52 238 6.1E-57 T 13-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RAM_15390 1f1e4c40967b780f7b5da2357bcc338d 684 SUPERFAMILY SSF56601 220 675 1.64E-67 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_15390 1f1e4c40967b780f7b5da2357bcc338d 684 Gene3D G3DSA:1.10.3810.10 45 254 2.7E-66 T 13-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RAM_15390 1f1e4c40967b780f7b5da2357bcc338d 684 SUPERFAMILY SSF53955 41 261 9.84E-65 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily RAM_15390 1f1e4c40967b780f7b5da2357bcc338d 684 Pfam PF00905 Penicillin binding protein transpeptidase domain 348 603 1.8E-23 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RAM_15390 1f1e4c40967b780f7b5da2357bcc338d 684 Gene3D G3DSA:3.40.710.10 281 681 2.4E-65 T 13-10-2018 RAM_10255 747ddee1de734a38dcdbf0097bc7089d 204 SUPERFAMILY SSF46689 8 86 2.05E-9 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_10255 747ddee1de734a38dcdbf0097bc7089d 204 Gene3D G3DSA:1.10.357.10 14 196 5.9E-14 T 13-10-2018 RAM_10255 747ddee1de734a38dcdbf0097bc7089d 204 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 59 2.0E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_08870 cd3da09fdfeb997ecd65020bc7bdd582 405 SUPERFAMILY SSF51011 315 403 1.04E-17 T 13-10-2018 RAM_08870 cd3da09fdfeb997ecd65020bc7bdd582 405 SUPERFAMILY SSF51445 36 321 2.59E-84 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_08870 cd3da09fdfeb997ecd65020bc7bdd582 405 Pfam PF16499 Alpha galactosidase A 45 321 3.6E-66 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_08870 cd3da09fdfeb997ecd65020bc7bdd582 405 PRINTS PR00740 Glycosyl hydrolase family 27 signature 190 208 3.5E-44 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_08870 cd3da09fdfeb997ecd65020bc7bdd582 405 PRINTS PR00740 Glycosyl hydrolase family 27 signature 256 275 3.5E-44 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_08870 cd3da09fdfeb997ecd65020bc7bdd582 405 PRINTS PR00740 Glycosyl hydrolase family 27 signature 40 59 3.5E-44 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_08870 cd3da09fdfeb997ecd65020bc7bdd582 405 PRINTS PR00740 Glycosyl hydrolase family 27 signature 77 92 3.5E-44 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_08870 cd3da09fdfeb997ecd65020bc7bdd582 405 PRINTS PR00740 Glycosyl hydrolase family 27 signature 277 298 3.5E-44 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_08870 cd3da09fdfeb997ecd65020bc7bdd582 405 PRINTS PR00740 Glycosyl hydrolase family 27 signature 160 177 3.5E-44 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_08870 cd3da09fdfeb997ecd65020bc7bdd582 405 Gene3D G3DSA:3.20.20.70 38 322 1.3E-109 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_08870 cd3da09fdfeb997ecd65020bc7bdd582 405 Gene3D G3DSA:2.60.40.1180 327 405 3.7E-18 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta RAM_44220 5f24865abde3e3101b10eb929dfa6ae8 151 Gene3D G3DSA:1.10.10.10 2 151 1.4E-46 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_44220 5f24865abde3e3101b10eb929dfa6ae8 151 SUPERFAMILY SSF46785 11 143 1.19E-37 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_44220 5f24865abde3e3101b10eb929dfa6ae8 151 Pfam PF01638 HxlR-like helix-turn-helix 20 105 2.2E-21 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type RAM_14960 5b6a440613aed45dfe4dbe968c1978e6 173 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 24 35 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RAM_14960 5b6a440613aed45dfe4dbe968c1978e6 173 SUPERFAMILY SSF54862 19 136 3.56E-9 T 13-10-2018 RAM_14960 5b6a440613aed45dfe4dbe968c1978e6 173 Gene3D G3DSA:3.30.70.20 8 86 2.4E-6 T 13-10-2018 RAM_14960 5b6a440613aed45dfe4dbe968c1978e6 173 Pfam PF00037 4Fe-4S binding domain 20 39 4.7E-6 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RAM_41565 8adf9eb529f38c199fddea18ffd120bd 306 SUPERFAMILY SSF102588 14 297 3.01E-80 T 13-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 RAM_41565 8adf9eb529f38c199fddea18ffd120bd 306 Gene3D G3DSA:3.40.50.10320 12 303 1.2E-81 T 13-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 RAM_41565 8adf9eb529f38c199fddea18ffd120bd 306 Hamap MF_01482 Mycothiol S-conjugate amidase [mca]. 18 298 54.509 T 13-10-2018 IPR017811 Mycothiol S-conjugate amidase Mca GO:0010126 RAM_41565 8adf9eb529f38c199fddea18ffd120bd 306 TIGRFAM TIGR03446 mycothiol_Mca: mycothiol conjugate amidase Mca 15 297 2.4E-154 T 13-10-2018 IPR017811 Mycothiol S-conjugate amidase Mca GO:0010126 RAM_41565 8adf9eb529f38c199fddea18ffd120bd 306 Pfam PF02585 GlcNAc-PI de-N-acetylase 18 163 1.6E-28 T 13-10-2018 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related Reactome: R-HSA-162710 RAM_32290 407a3e89fa3c37fa47b9ef21facfb6a5 315 SUPERFAMILY SSF103481 54 153 1.57E-9 T 13-10-2018 RAM_32290 407a3e89fa3c37fa47b9ef21facfb6a5 315 SUPERFAMILY SSF103481 222 310 1.27E-15 T 13-10-2018 RAM_32290 407a3e89fa3c37fa47b9ef21facfb6a5 315 Pfam PF00892 EamA-like transporter family 164 306 9.7E-23 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RAM_32290 407a3e89fa3c37fa47b9ef21facfb6a5 315 Pfam PF00892 EamA-like transporter family 18 152 3.0E-15 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RAM_35270 82cbe50b85b2569ee3700c303504d7a4 273 Gene3D G3DSA:1.10.10.60 4 63 1.2E-15 T 13-10-2018 RAM_35270 82cbe50b85b2569ee3700c303504d7a4 273 SMART SM00342 20 103 8.2E-30 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_35270 82cbe50b85b2569ee3700c303504d7a4 273 SUPERFAMILY SSF46689 6 53 1.18E-9 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_35270 82cbe50b85b2569ee3700c303504d7a4 273 SUPERFAMILY SSF46689 56 106 4.48E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_35270 82cbe50b85b2569ee3700c303504d7a4 273 Gene3D G3DSA:1.10.10.2730 64 105 5.4E-13 T 13-10-2018 RAM_35270 82cbe50b85b2569ee3700c303504d7a4 273 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 72 87 2.4E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RAM_35270 82cbe50b85b2569ee3700c303504d7a4 273 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 87 103 2.4E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RAM_35270 82cbe50b85b2569ee3700c303504d7a4 273 Pfam PF12833 Helix-turn-helix domain 26 104 3.6E-21 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_17465 a4a8cca6652358b57f2c8224021fa705 130 Pfam PF17240 Family of unknown function (DUF5313) 2 124 2.2E-48 T 13-10-2018 IPR035197 Protein of unknown function DUF5313 RAM_10215 a7c68b18c4802a8ef1dcb4a512a41828 271 Gene3D G3DSA:3.40.50.720 2 271 2.2E-62 T 13-10-2018 RAM_10215 a7c68b18c4802a8ef1dcb4a512a41828 271 SUPERFAMILY SSF51735 3 264 2.36E-46 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_10215 a7c68b18c4802a8ef1dcb4a512a41828 271 Pfam PF13460 NAD(P)H-binding 6 167 7.5E-19 T 13-10-2018 IPR016040 NAD(P)-binding domain RAM_11500 fea24b7007b135fbacf1c7eab70d9d24 728 Pfam PF03176 MMPL family 45 358 3.0E-70 T 13-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 RAM_11500 fea24b7007b135fbacf1c7eab70d9d24 728 Pfam PF03176 MMPL family 437 692 3.9E-40 T 13-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 RAM_11500 fea24b7007b135fbacf1c7eab70d9d24 728 Gene3D G3DSA:1.20.1640.10 175 333 7.0E-7 T 13-10-2018 RAM_11500 fea24b7007b135fbacf1c7eab70d9d24 728 Gene3D G3DSA:1.20.1640.10 491 690 4.9E-7 T 13-10-2018 RAM_11500 fea24b7007b135fbacf1c7eab70d9d24 728 SUPERFAMILY SSF82866 456 692 7.85E-31 T 13-10-2018 RAM_11500 fea24b7007b135fbacf1c7eab70d9d24 728 SUPERFAMILY SSF82866 142 331 3.4E-30 T 13-10-2018 RAM_14365 8322f05a60edf19451a8935007b9e5a4 308 Gene3D G3DSA:3.40.50.300 2 228 1.3E-57 T 13-10-2018 RAM_14365 8322f05a60edf19451a8935007b9e5a4 308 ProSitePatterns PS00211 ABC transporters family signature. 132 146 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_14365 8322f05a60edf19451a8935007b9e5a4 308 SMART SM00382 30 208 3.5E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_14365 8322f05a60edf19451a8935007b9e5a4 308 Pfam PF00005 ABC transporter 22 160 8.0E-23 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_14365 8322f05a60edf19451a8935007b9e5a4 308 SUPERFAMILY SSF52540 5 219 1.29E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_17210 8eeddd882533e62932c5efc1408938bb 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 138 154 1.4E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17210 8eeddd882533e62932c5efc1408938bb 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 164 183 1.4E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17210 8eeddd882533e62932c5efc1408938bb 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 90 101 1.4E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17210 8eeddd882533e62932c5efc1408938bb 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 219 239 1.4E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17210 8eeddd882533e62932c5efc1408938bb 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 185 202 1.4E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17210 8eeddd882533e62932c5efc1408938bb 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 17 34 1.4E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17210 8eeddd882533e62932c5efc1408938bb 256 SUPERFAMILY SSF51735 13 252 6.97E-74 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_17210 8eeddd882533e62932c5efc1408938bb 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 90 101 8.6E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17210 8eeddd882533e62932c5efc1408938bb 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 144 152 8.6E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17210 8eeddd882533e62932c5efc1408938bb 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 164 183 8.6E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17210 8eeddd882533e62932c5efc1408938bb 256 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 22 251 1.5E-64 T 13-10-2018 RAM_17210 8eeddd882533e62932c5efc1408938bb 256 Gene3D G3DSA:3.40.50.720 6 252 1.2E-78 T 13-10-2018 RAM_23545 b44a5439f05ac579ec6900743d50b5ed 313 SUPERFAMILY SSF47413 6 55 9.38E-11 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_23545 b44a5439f05ac579ec6900743d50b5ed 313 SUPERFAMILY SSF53822 78 294 3.14E-18 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_23545 b44a5439f05ac579ec6900743d50b5ed 313 SMART SM00354 3 65 7.7E-5 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_23545 b44a5439f05ac579ec6900743d50b5ed 313 Gene3D G3DSA:3.40.50.2300 85 293 4.9E-24 T 13-10-2018 RAM_23545 b44a5439f05ac579ec6900743d50b5ed 313 Pfam PF00356 Bacterial regulatory proteins, lacI family 8 51 1.7E-10 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_23545 b44a5439f05ac579ec6900743d50b5ed 313 Gene3D G3DSA:1.10.260.40 1 50 5.3E-14 T 13-10-2018 RAM_23545 b44a5439f05ac579ec6900743d50b5ed 313 Pfam PF13377 Periplasmic binding protein-like domain 161 308 4.9E-16 T 13-10-2018 RAM_23545 b44a5439f05ac579ec6900743d50b5ed 313 Gene3D G3DSA:3.40.50.2300 152 270 4.9E-24 T 13-10-2018 RAM_24990 d544032bbdab035eb81d6664fccea02b 383 SUPERFAMILY SSF54631 267 378 8.7E-7 T 13-10-2018 RAM_24990 d544032bbdab035eb81d6664fccea02b 383 PIRSF PIRSF006404 19 383 1.1E-67 T 13-10-2018 IPR016483 Uncharacterised conserved protein UCP006404, peptidase M50/CBS RAM_24990 d544032bbdab035eb81d6664fccea02b 383 Pfam PF02163 Peptidase family M50 157 199 1.2E-6 T 13-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 RAM_30525 414f25bf563e5d1074f3d60bf45f2244 617 Gene3D G3DSA:3.30.450.40 67 239 2.4E-41 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_30525 414f25bf563e5d1074f3d60bf45f2244 617 Gene3D G3DSA:1.10.10.2840 484 615 1.0E-21 T 13-10-2018 RAM_30525 414f25bf563e5d1074f3d60bf45f2244 617 SUPERFAMILY SSF55781 70 249 1.66E-28 T 13-10-2018 RAM_30525 414f25bf563e5d1074f3d60bf45f2244 617 SMART SM00065 87 238 6.9E-21 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_30525 414f25bf563e5d1074f3d60bf45f2244 617 Pfam PF13185 GAF domain 87 229 1.3E-17 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_30525 414f25bf563e5d1074f3d60bf45f2244 617 Pfam PF13556 PucR C-terminal helix-turn-helix domain 552 610 3.7E-17 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain RAM_44635 44e39a296dbe189ad4a9e8933c851eb1 304 Pfam PF01297 Zinc-uptake complex component A periplasmic 46 300 6.5E-42 T 13-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 RAM_44635 44e39a296dbe189ad4a9e8933c851eb1 304 SUPERFAMILY SSF53807 40 304 1.91E-48 T 13-10-2018 RAM_44635 44e39a296dbe189ad4a9e8933c851eb1 304 Gene3D G3DSA:3.40.50.1980 42 191 1.9E-29 T 13-10-2018 RAM_31740 d415b0adf6efefd16cbf599c8224a810 135 Pfam PF12079 Protein of unknown function (DUF3558) 1 127 2.9E-13 T 13-10-2018 IPR024520 Protein of unknown function DUF3558 RAM_47060 c0a33451c4bb1784b56bb7315086b8b9 238 SUPERFAMILY SSF55797 117 237 3.66E-22 T 13-10-2018 IPR035940 CAP superfamily RAM_47060 c0a33451c4bb1784b56bb7315086b8b9 238 Gene3D G3DSA:3.40.33.10 52 237 8.9E-54 T 13-10-2018 IPR035940 CAP superfamily RAM_47060 c0a33451c4bb1784b56bb7315086b8b9 238 Pfam PF00188 Cysteine-rich secretory protein family 125 236 5.3E-23 T 13-10-2018 IPR014044 CAP domain RAM_10970 aefd3f6a89dcc47a6889c55054b88549 1195 Pfam PF14579 Helix-hairpin-helix motif 842 928 6.8E-25 T 13-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAM_10970 aefd3f6a89dcc47a6889c55054b88549 1195 Gene3D G3DSA:1.10.10.1600 456 545 8.0E-16 T 13-10-2018 RAM_10970 aefd3f6a89dcc47a6889c55054b88549 1195 Gene3D G3DSA:3.20.20.140 2 297 1.7E-94 T 13-10-2018 RAM_10970 aefd3f6a89dcc47a6889c55054b88549 1195 SMART SM00481 7 74 9.4E-32 T 13-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal RAM_10970 aefd3f6a89dcc47a6889c55054b88549 1195 Gene3D G3DSA:1.10.150.870 821 919 3.5E-5 T 13-10-2018 RAM_10970 aefd3f6a89dcc47a6889c55054b88549 1195 Pfam PF02811 PHP domain 8 200 5.6E-48 T 13-10-2018 IPR004013 PHP domain GO:0003824 RAM_10970 aefd3f6a89dcc47a6889c55054b88549 1195 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 322 762 3.3E-158 T 13-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAM_10970 aefd3f6a89dcc47a6889c55054b88549 1195 SUPERFAMILY SSF89550 6 276 1.63E-28 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 RAM_10970 aefd3f6a89dcc47a6889c55054b88549 1195 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 6 1070 0.0 T 13-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAM_17175 00e8c17f4aee7488894351d0a70d02e5 289 Pfam PF00106 short chain dehydrogenase 6 199 7.5E-45 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17175 00e8c17f4aee7488894351d0a70d02e5 289 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 5 190 5.5E-4 T 13-10-2018 RAM_17175 00e8c17f4aee7488894351d0a70d02e5 289 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 146 174 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_17175 00e8c17f4aee7488894351d0a70d02e5 289 SUPERFAMILY SSF51735 3 248 3.93E-63 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_17175 00e8c17f4aee7488894351d0a70d02e5 289 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 139 147 1.0E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17175 00e8c17f4aee7488894351d0a70d02e5 289 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 1.0E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17175 00e8c17f4aee7488894351d0a70d02e5 289 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 178 1.0E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17175 00e8c17f4aee7488894351d0a70d02e5 289 Gene3D G3DSA:3.40.50.720 3 288 3.5E-80 T 13-10-2018 RAM_17175 00e8c17f4aee7488894351d0a70d02e5 289 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 7.1E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17175 00e8c17f4aee7488894351d0a70d02e5 289 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 7.1E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17175 00e8c17f4aee7488894351d0a70d02e5 289 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 7.1E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17175 00e8c17f4aee7488894351d0a70d02e5 289 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 7.1E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17175 00e8c17f4aee7488894351d0a70d02e5 289 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 133 149 7.1E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_29040 d8af589b22ecb5a3925d85a81e9816ad 124 Gene3D G3DSA:3.30.70.1060 1 113 2.8E-35 T 13-10-2018 RAM_29040 d8af589b22ecb5a3925d85a81e9816ad 124 Pfam PF03795 YCII-related domain 2 110 8.0E-18 T 13-10-2018 IPR005545 YCII-related RAM_29040 d8af589b22ecb5a3925d85a81e9816ad 124 SUPERFAMILY SSF54909 2 111 3.75E-27 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_27455 c5f22922556c6e9f8640f52c1ab2586e 301 Gene3D G3DSA:2.30.320.10 51 294 2.0E-10 T 13-10-2018 IPR035948 YwqG-like superfamily RAM_27455 c5f22922556c6e9f8640f52c1ab2586e 301 SUPERFAMILY SSF103032 55 291 2.88E-13 T 13-10-2018 IPR035948 YwqG-like superfamily RAM_27455 c5f22922556c6e9f8640f52c1ab2586e 301 Pfam PF09234 Domain of unknown function (DUF1963) 56 293 2.9E-15 T 13-10-2018 IPR015315 Protein of unknown function DUF1963 RAM_24620 e37f8c77cb7faaccfeb375ef187779bb 148 TIGRFAM TIGR02241 TIGR02241: conserved hypothetical phage tail region protein 9 141 2.3E-22 T 13-10-2018 IPR011747 Conserved hypothetical protein CHP02241 RAM_24620 e37f8c77cb7faaccfeb375ef187779bb 148 Pfam PF06841 T4-like virus tail tube protein gp19 12 141 2.5E-27 T 13-10-2018 IPR010667 Bacteriophage T4, Gp19, tail tube GO:0005198 RAM_14580 9d4444fbe04a5754f954acb41e8a6c60 242 Pfam PF13580 SIS domain 10 141 4.8E-35 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 RAM_14580 9d4444fbe04a5754f954acb41e8a6c60 242 Gene3D G3DSA:3.40.50.10490 4 236 1.6E-59 T 13-10-2018 RAM_14580 9d4444fbe04a5754f954acb41e8a6c60 242 SUPERFAMILY SSF53697 11 196 5.87E-18 T 13-10-2018 RAM_07565 8159e898d3abce975ddf81711518d8bf 601 Pfam PF00350 Dynamin family 51 191 1.3E-5 T 13-10-2018 IPR022812 Dynamin superfamily RAM_07565 8159e898d3abce975ddf81711518d8bf 601 SUPERFAMILY SSF52540 41 264 2.0E-19 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_07565 8159e898d3abce975ddf81711518d8bf 601 Gene3D G3DSA:3.40.50.300 52 236 1.3E-17 T 13-10-2018 RAM_41850 a4474c4912f28c56a110dca984f7dec8 166 Pfam PF07291 Methylamine utilisation protein MauE 10 153 7.2E-9 T 13-10-2018 IPR009908 Methylamine utilisation protein, MauE GO:0016021|GO:0030416 RAM_33465 cafaac1d8276c7f0b5b1c52f4d4b879b 137 Pfam PF01042 Endoribonuclease L-PSP 26 134 1.1E-20 T 13-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 RAM_33465 cafaac1d8276c7f0b5b1c52f4d4b879b 137 Gene3D G3DSA:3.30.1330.40 14 137 9.7E-32 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 RAM_33465 cafaac1d8276c7f0b5b1c52f4d4b879b 137 SUPERFAMILY SSF55298 23 136 5.5E-30 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 RAM_12920 d586729b0e7a2a331d7be3f0fae47616 262 Pfam PF13490 Putative zinc-finger 9 36 1.9E-8 T 13-10-2018 IPR027383 Putative zinc-finger RAM_12920 d586729b0e7a2a331d7be3f0fae47616 262 Gene3D G3DSA:1.10.10.1320 4 58 1.3E-15 T 13-10-2018 RAM_23915 32d556a4d4bf83a3ed318467fecc5745 150 Pfam PF08592 Domain of unknown function (DUF1772) 18 144 3.4E-16 T 13-10-2018 RAM_37080 a47966faddf710eecb6116ce297b06ec 132 Gene3D G3DSA:3.10.450.50 10 132 2.5E-27 T 13-10-2018 RAM_37080 a47966faddf710eecb6116ce297b06ec 132 SUPERFAMILY SSF54427 13 130 4.49E-25 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_37080 a47966faddf710eecb6116ce297b06ec 132 Pfam PF13577 SnoaL-like domain 13 127 1.6E-15 T 13-10-2018 IPR037401 SnoaL-like domain RAM_29855 a7a2dbbcfe74ffc8bd202db85fe36d08 251 Pfam PF13613 Helix-turn-helix of DDE superfamily endonuclease 1 41 8.2E-10 T 13-10-2018 IPR027805 Transposase, Helix-turn-helix domain RAM_29855 a7a2dbbcfe74ffc8bd202db85fe36d08 251 Pfam PF01609 Transposase DDE domain 50 132 3.5E-7 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 RAM_04325 6881619513bd60d4dde2fdc594aad1c2 459 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 197 207 - T 13-10-2018 IPR022398 Peptidase S8, subtilisin, His-active site RAM_04325 6881619513bd60d4dde2fdc594aad1c2 459 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 152 163 - T 13-10-2018 IPR023827 Peptidase S8, subtilisin, Asp-active site RAM_04325 6881619513bd60d4dde2fdc594aad1c2 459 Gene3D G3DSA:3.40.50.200 114 459 6.8E-72 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RAM_04325 6881619513bd60d4dde2fdc594aad1c2 459 Pfam PF00082 Subtilase family 148 449 1.5E-38 T 13-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RAM_04325 6881619513bd60d4dde2fdc594aad1c2 459 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 390 400 - T 13-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site RAM_04325 6881619513bd60d4dde2fdc594aad1c2 459 PRINTS PR00723 Subtilisin serine protease family (S8) signature 147 166 1.9E-18 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related RAM_04325 6881619513bd60d4dde2fdc594aad1c2 459 PRINTS PR00723 Subtilisin serine protease family (S8) signature 389 405 1.9E-18 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related RAM_04325 6881619513bd60d4dde2fdc594aad1c2 459 PRINTS PR00723 Subtilisin serine protease family (S8) signature 193 206 1.9E-18 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related RAM_04325 6881619513bd60d4dde2fdc594aad1c2 459 SUPERFAMILY SSF52743 128 458 2.75E-62 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RAM_24545 c7c5c6c393a4c6c6024ebf24a6e8e4b5 262 Gene3D G3DSA:3.40.50.1820 9 262 2.7E-38 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_24545 c7c5c6c393a4c6c6024ebf24a6e8e4b5 262 Pfam PF12697 Alpha/beta hydrolase family 36 253 2.4E-14 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_24545 c7c5c6c393a4c6c6024ebf24a6e8e4b5 262 SUPERFAMILY SSF53474 13 259 1.71E-36 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_16985 834af5a0efde9f6270db80d25c5d828c 204 Pfam PF00925 GTP cyclohydrolase II 24 173 7.0E-62 T 13-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 RAM_16985 834af5a0efde9f6270db80d25c5d828c 204 SUPERFAMILY SSF142695 9 174 4.58E-55 T 13-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 RAM_16985 834af5a0efde9f6270db80d25c5d828c 204 Gene3D G3DSA:3.40.50.10990 8 176 6.0E-64 T 13-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 RAM_15000 5dd78ba0f9d56ad0a63a060aaf21e00e 421 Gene3D G3DSA:3.40.50.150 143 410 2.8E-94 T 13-10-2018 RAM_15000 5dd78ba0f9d56ad0a63a060aaf21e00e 421 Pfam PF02353 Mycolic acid cyclopropane synthetase 134 402 1.1E-84 T 13-10-2018 RAM_15000 5dd78ba0f9d56ad0a63a060aaf21e00e 421 PIRSF PIRSF003085 7 421 2.0E-117 T 13-10-2018 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 RAM_15000 5dd78ba0f9d56ad0a63a060aaf21e00e 421 SUPERFAMILY SSF53335 145 407 4.26E-76 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_46520 65aaec5969648c2a5e8f544d0ae2b772 334 Gene3D G3DSA:2.130.10.10 2 332 1.2E-78 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RAM_46520 65aaec5969648c2a5e8f544d0ae2b772 334 Pfam PF10282 Lactonase, 7-bladed beta-propeller 5 317 3.1E-71 T 13-10-2018 IPR019405 Lactonase, 7-bladed beta propeller RAM_46520 65aaec5969648c2a5e8f544d0ae2b772 334 SUPERFAMILY SSF51004 25 307 1.44E-25 T 13-10-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily RAM_29075 e6b436fb534289c1656ce74d7f9fbd08 462 SUPERFAMILY SSF53474 26 438 1.77E-22 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_29075 e6b436fb534289c1656ce74d7f9fbd08 462 Pfam PF08386 TAP-like protein 366 461 1.1E-20 T 13-10-2018 IPR013595 Peptidase S33 tripeptidyl aminopeptidase-like, C-terminal RAM_29075 e6b436fb534289c1656ce74d7f9fbd08 462 Pfam PF00561 alpha/beta hydrolase fold 31 297 3.2E-19 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_14545 d8ecdebf9c02a00b4543d2f1d71ca481 542 Pfam PF00005 ABC transporter 17 197 4.4E-21 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_14545 d8ecdebf9c02a00b4543d2f1d71ca481 542 SMART SM00382 26 242 4.4E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_14545 d8ecdebf9c02a00b4543d2f1d71ca481 542 SMART SM00382 360 527 6.5E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_14545 d8ecdebf9c02a00b4543d2f1d71ca481 542 ProSitePatterns PS00211 ABC transporters family signature. 453 467 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_14545 d8ecdebf9c02a00b4543d2f1d71ca481 542 Pfam PF00005 ABC transporter 353 481 7.2E-22 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_14545 d8ecdebf9c02a00b4543d2f1d71ca481 542 Pfam PF12848 ABC transporter 240 314 4.1E-7 T 13-10-2018 IPR032781 ABC-transporter extension domain RAM_14545 d8ecdebf9c02a00b4543d2f1d71ca481 542 ProSitePatterns PS00211 ABC transporters family signature. 160 174 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_14545 d8ecdebf9c02a00b4543d2f1d71ca481 542 SUPERFAMILY SSF52540 340 526 4.86E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_14545 d8ecdebf9c02a00b4543d2f1d71ca481 542 Gene3D G3DSA:3.40.50.300 298 539 3.9E-54 T 13-10-2018 RAM_14545 d8ecdebf9c02a00b4543d2f1d71ca481 542 SUPERFAMILY SSF52540 3 239 1.49E-39 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_14545 d8ecdebf9c02a00b4543d2f1d71ca481 542 Gene3D G3DSA:3.40.50.300 8 296 5.3E-54 T 13-10-2018 RAM_23920 2d2437d299e843793356b5d61510a919 161 SUPERFAMILY SSF55136 4 123 4.01E-8 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily RAM_23920 2d2437d299e843793356b5d61510a919 161 Gene3D G3DSA:3.20.80.10 1 161 1.1E-29 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily RAM_23920 2d2437d299e843793356b5d61510a919 161 Pfam PF06445 GyrI-like small molecule binding domain 61 159 6.2E-6 T 13-10-2018 IPR029442 GyrI-like small molecule binding domain RAM_45285 c5dc1a6e97a293170609ce30996459a4 293 SUPERFAMILY SSF46785 3 69 8.85E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_45285 c5dc1a6e97a293170609ce30996459a4 293 SUPERFAMILY SSF48498 144 291 1.11E-16 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_45285 c5dc1a6e97a293170609ce30996459a4 293 Gene3D G3DSA:1.10.10.10 2 75 4.9E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_45285 c5dc1a6e97a293170609ce30996459a4 293 Gene3D G3DSA:1.10.10.60 76 134 2.2E-24 T 13-10-2018 RAM_45285 c5dc1a6e97a293170609ce30996459a4 293 Pfam PF00440 Bacterial regulatory proteins, tetR family 83 126 4.1E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_45285 c5dc1a6e97a293170609ce30996459a4 293 Pfam PF00392 Bacterial regulatory proteins, gntR family 3 65 9.0E-16 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_45285 c5dc1a6e97a293170609ce30996459a4 293 SMART SM00345 6 65 8.4E-17 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_45285 c5dc1a6e97a293170609ce30996459a4 293 SUPERFAMILY SSF46689 70 134 3.2E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_45285 c5dc1a6e97a293170609ce30996459a4 293 Pfam PF02909 Tetracyclin repressor, C-terminal all-alpha domain 139 288 3.5E-9 T 13-10-2018 IPR004111 Tetracycline transcriptional regulator, TetR, C-terminal GO:0045892 RAM_45285 c5dc1a6e97a293170609ce30996459a4 293 Gene3D G3DSA:1.10.357.10 135 292 2.2E-28 T 13-10-2018 RAM_46500 2e69c1d67331992aae30b4ff4cbe1ebc 272 SMART SM00062 33 252 4.5E-48 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RAM_46500 2e69c1d67331992aae30b4ff4cbe1ebc 272 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 34 249 1.6E-49 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RAM_46500 2e69c1d67331992aae30b4ff4cbe1ebc 272 Gene3D G3DSA:3.40.190.10 118 210 3.0E-55 T 13-10-2018 RAM_46500 2e69c1d67331992aae30b4ff4cbe1ebc 272 SUPERFAMILY SSF53850 32 249 5.5E-50 T 13-10-2018 RAM_46500 2e69c1d67331992aae30b4ff4cbe1ebc 272 Gene3D G3DSA:3.40.190.10 34 248 3.0E-55 T 13-10-2018 RAM_16205 5c5e332403424bbdf52d45e3a7de7317 307 TIGRFAM TIGR03718 R_switched_Alx: integral membrane protein, TerC family 4 300 1.5E-123 T 13-10-2018 IPR022369 Integral membrane protein TerC, riboswitch-linked GO:0016021 RAM_16205 5c5e332403424bbdf52d45e3a7de7317 307 Pfam PF03741 Integral membrane protein TerC family 68 270 3.0E-56 T 13-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 RAM_00225 1dfbd36808117decf86cfda00ed71f85 219 SUPERFAMILY SSF52172 5 165 9.29E-22 T 13-10-2018 IPR011006 CheY-like superfamily RAM_00225 1dfbd36808117decf86cfda00ed71f85 219 SUPERFAMILY SSF46894 149 200 8.5E-13 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_00225 1dfbd36808117decf86cfda00ed71f85 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 168 184 9.6E-10 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_00225 1dfbd36808117decf86cfda00ed71f85 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 154 168 9.6E-10 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_00225 1dfbd36808117decf86cfda00ed71f85 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 184 196 9.6E-10 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_00225 1dfbd36808117decf86cfda00ed71f85 219 Gene3D G3DSA:3.40.50.12740 6 214 8.2E-48 T 13-10-2018 RAM_00225 1dfbd36808117decf86cfda00ed71f85 219 SMART SM00421 151 213 1.2E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_00225 1dfbd36808117decf86cfda00ed71f85 219 SMART SM00448 5 124 4.7E-12 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_00225 1dfbd36808117decf86cfda00ed71f85 219 Pfam PF00196 Bacterial regulatory proteins, luxR family 153 199 6.2E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_00225 1dfbd36808117decf86cfda00ed71f85 219 Pfam PF00072 Response regulator receiver domain 8 112 1.4E-15 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_23835 aa3b45ee3b35301f37564b0ab3ba8b10 191 SUPERFAMILY SSF53597 6 188 2.57E-20 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RAM_23835 aa3b45ee3b35301f37564b0ab3ba8b10 191 Pfam PF01872 RibD C-terminal domain 6 180 7.7E-14 T 13-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 RAM_23835 aa3b45ee3b35301f37564b0ab3ba8b10 191 Gene3D G3DSA:3.40.430.10 5 185 3.8E-23 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RAM_04155 db989aa518118ac7744ab31d20585932 471 SUPERFAMILY SSF56672 1 175 1.11E-24 T 13-10-2018 RAM_04155 db989aa518118ac7744ab31d20585932 471 Gene3D G3DSA:3.30.70.270 18 175 7.4E-10 T 13-10-2018 RAM_04155 db989aa518118ac7744ab31d20585932 471 Gene3D G3DSA:1.10.150.20 114 169 7.4E-10 T 13-10-2018 RAM_04155 db989aa518118ac7744ab31d20585932 471 Gene3D G3DSA:2.30.40.20 1 17 7.4E-10 T 13-10-2018 RAM_46790 c92adb166f3cac04e6fe459935561309 233 Pfam PF09335 SNARE associated Golgi protein 49 176 7.0E-24 T 13-10-2018 IPR032816 SNARE associated Golgi protein RAM_02635 3de2623e99be9f424013517acb798555 359 Gene3D G3DSA:3.40.50.2000 1 172 1.4E-25 T 13-10-2018 RAM_02635 3de2623e99be9f424013517acb798555 359 SUPERFAMILY SSF53756 2 350 4.85E-66 T 13-10-2018 RAM_02635 3de2623e99be9f424013517acb798555 359 Pfam PF00534 Glycosyl transferases group 1 179 330 4.7E-23 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 RAM_02635 3de2623e99be9f424013517acb798555 359 Gene3D G3DSA:3.40.50.2000 173 332 5.4E-30 T 13-10-2018 RAM_02635 3de2623e99be9f424013517acb798555 359 Pfam PF13439 Glycosyltransferase Family 4 1 165 5.7E-24 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 RAM_36345 45e221d3f4620c81dd79bc0d51714ae0 347 Gene3D G3DSA:2.40.440.10 192 333 1.6E-95 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like RAM_36345 45e221d3f4620c81dd79bc0d51714ae0 347 Pfam PF03734 L,D-transpeptidase catalytic domain 199 318 1.0E-17 T 13-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 RAM_36345 45e221d3f4620c81dd79bc0d51714ae0 347 Gene3D G3DSA:2.60.40.3710 101 344 1.6E-95 T 13-10-2018 RAM_36345 45e221d3f4620c81dd79bc0d51714ae0 347 Gene3D G3DSA:2.60.40.3780 1 91 2.9E-28 T 13-10-2018 RAM_36345 45e221d3f4620c81dd79bc0d51714ae0 347 SUPERFAMILY SSF141523 192 318 5.36E-30 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like RAM_42750 1f9845238040b71b7b68a2be8849aaa5 214 SUPERFAMILY SSF53448 1 192 2.18E-32 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_42750 1f9845238040b71b7b68a2be8849aaa5 214 Pfam PF00535 Glycosyl transferase family 2 2 121 6.2E-21 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RAM_42750 1f9845238040b71b7b68a2be8849aaa5 214 Gene3D G3DSA:3.90.550.10 1 214 5.2E-40 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_32220 910d599fef3fcecc2b34b2e611007945 153 SUPERFAMILY SSF142433 5 152 1.83E-42 T 13-10-2018 IPR036653 CinA-like, C-terminal RAM_32220 910d599fef3fcecc2b34b2e611007945 153 Gene3D G3DSA:3.90.950.20 2 153 1.1E-50 T 13-10-2018 IPR036653 CinA-like, C-terminal RAM_32220 910d599fef3fcecc2b34b2e611007945 153 Pfam PF02464 Competence-damaged protein 4 150 2.8E-46 T 13-10-2018 IPR008136 CinA, C-terminal RAM_32220 910d599fef3fcecc2b34b2e611007945 153 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 7 149 2.6E-31 T 13-10-2018 IPR008136 CinA, C-terminal RAM_18335 25589f5e46e6c82fbe7b513737991643 59 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 16 50 4.3E-7 T 13-10-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like RAM_18335 25589f5e46e6c82fbe7b513737991643 59 Gene3D G3DSA:3.30.530.20 1 57 4.8E-15 T 13-10-2018 IPR023393 START-like domain superfamily RAM_18335 25589f5e46e6c82fbe7b513737991643 59 SUPERFAMILY SSF55961 2 51 1.75E-14 T 13-10-2018 RAM_37055 f99db21dd6da7a0a5a43bfbedabd425d 327 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 96 323 2.8E-62 T 13-10-2018 RAM_37055 f99db21dd6da7a0a5a43bfbedabd425d 327 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 222 250 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_37055 f99db21dd6da7a0a5a43bfbedabd425d 327 Pfam PF02627 Carboxymuconolactone decarboxylase family 1 43 6.4E-7 T 13-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RAM_37055 f99db21dd6da7a0a5a43bfbedabd425d 327 Gene3D G3DSA:3.40.50.720 76 326 3.5E-86 T 13-10-2018 RAM_37055 f99db21dd6da7a0a5a43bfbedabd425d 327 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 215 223 5.6E-14 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_37055 f99db21dd6da7a0a5a43bfbedabd425d 327 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 173 5.6E-14 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_37055 f99db21dd6da7a0a5a43bfbedabd425d 327 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 235 254 5.6E-14 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_37055 f99db21dd6da7a0a5a43bfbedabd425d 327 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 87 266 0.0036 T 13-10-2018 RAM_37055 f99db21dd6da7a0a5a43bfbedabd425d 327 Gene3D G3DSA:1.20.1290.10 1 53 2.6E-10 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_37055 f99db21dd6da7a0a5a43bfbedabd425d 327 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 256 273 2.0E-45 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_37055 f99db21dd6da7a0a5a43bfbedabd425d 327 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 173 2.0E-45 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_37055 f99db21dd6da7a0a5a43bfbedabd425d 327 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 235 254 2.0E-45 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_37055 f99db21dd6da7a0a5a43bfbedabd425d 327 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 88 105 2.0E-45 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_37055 f99db21dd6da7a0a5a43bfbedabd425d 327 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 288 308 2.0E-45 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_37055 f99db21dd6da7a0a5a43bfbedabd425d 327 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 209 225 2.0E-45 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_37055 f99db21dd6da7a0a5a43bfbedabd425d 327 SUPERFAMILY SSF69118 1 43 4.03E-10 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_37055 f99db21dd6da7a0a5a43bfbedabd425d 327 SUPERFAMILY SSF51735 81 326 4.51E-82 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_09595 f4e1f81c42210ecc8c6e60c7b5019735 613 PIRSF PIRSF001589 1 612 2.4E-134 T 13-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 RAM_09595 f4e1f81c42210ecc8c6e60c7b5019735 613 SUPERFAMILY SSF56235 1 224 3.77E-63 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RAM_09595 f4e1f81c42210ecc8c6e60c7b5019735 613 Pfam PF13537 Glutamine amidotransferase domain 48 169 4.9E-45 T 13-10-2018 IPR017932 Glutamine amidotransferase type 2 domain RAM_09595 f4e1f81c42210ecc8c6e60c7b5019735 613 Gene3D G3DSA:3.60.20.10 2 185 1.4E-61 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RAM_09595 f4e1f81c42210ecc8c6e60c7b5019735 613 SUPERFAMILY SSF52402 229 574 3.07E-58 T 13-10-2018 RAM_09595 f4e1f81c42210ecc8c6e60c7b5019735 613 Pfam PF00733 Asparagine synthase 240 577 2.5E-81 T 13-10-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 RAM_09595 f4e1f81c42210ecc8c6e60c7b5019735 613 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 538 1.2E-144 T 13-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 RAM_05640 b4238b172e29fe5d3f6d51f0cb736208 76 Pfam PF11305 Protein of unknown function (DUF3107) 1 73 5.2E-29 T 13-10-2018 IPR021456 Protein of unknown function DUF3107 RAM_22595 39a7dc05488abd4892488b0e08c0d0ff 256 Pfam PF03211 Pectate lyase 29 231 1.3E-82 T 13-10-2018 IPR004898 Pectate lyase PlyH/PlyE-like GO:0005576|GO:0030570 KEGG: 00040+4.2.2.2 RAM_22595 39a7dc05488abd4892488b0e08c0d0ff 256 SUPERFAMILY SSF51126 41 217 6.28E-55 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor RAM_22595 39a7dc05488abd4892488b0e08c0d0ff 256 Gene3D G3DSA:2.160.20.10 41 256 1.6E-76 T 13-10-2018 IPR012334 Pectin lyase fold RAM_11425 2c3d26fe76b3cc4f71422756cd896eaf 106 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 9 97 2.0E-14 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family RAM_11425 2c3d26fe76b3cc4f71422756cd896eaf 106 SUPERFAMILY SSF82607 10 98 4.71E-14 T 13-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily RAM_11425 2c3d26fe76b3cc4f71422756cd896eaf 106 PIRSF PIRSF004555 6 104 9.8E-15 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family RAM_11425 2c3d26fe76b3cc4f71422756cd896eaf 106 Gene3D G3DSA:3.30.1310.10 5 105 2.8E-17 T 13-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily RAM_11425 2c3d26fe76b3cc4f71422756cd896eaf 106 Pfam PF02575 YbaB/EbfC DNA-binding family 15 100 1.4E-17 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family RAM_25980 d11af4ca4b1279bd0f75a5ce45b61c48 111 SMART SM00994 2 41 1.0E-13 T 13-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 RAM_25980 d11af4ca4b1279bd0f75a5ce45b61c48 111 SUPERFAMILY SSF57716 4 38 1.3E-9 T 13-10-2018 RAM_25980 d11af4ca4b1279bd0f75a5ce45b61c48 111 Gene3D G3DSA:3.30.50.30 2 41 2.4E-16 T 13-10-2018 IPR038366 Zinc finger, ClpX C4-type superfamily RAM_25980 d11af4ca4b1279bd0f75a5ce45b61c48 111 Pfam PF06689 ClpX C4-type zinc finger 4 39 1.3E-15 T 13-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 RAM_03470 8fa003e3d7e8b7eb2844a2c630d2312f 103 SUPERFAMILY SSF54189 8 98 3.96E-32 T 13-10-2018 IPR012678 Ribosomal protein L23/L15e core domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_03470 8fa003e3d7e8b7eb2844a2c630d2312f 103 Pfam PF00276 Ribosomal protein L23 11 93 5.8E-32 T 13-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 RAM_03470 8fa003e3d7e8b7eb2844a2c630d2312f 103 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 10 100 21.346 T 13-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 RAM_03470 8fa003e3d7e8b7eb2844a2c630d2312f 103 Gene3D G3DSA:3.30.70.330 9 100 3.3E-31 T 13-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily RAM_03470 8fa003e3d7e8b7eb2844a2c630d2312f 103 ProSitePatterns PS00050 Ribosomal protein L23 signature. 82 97 - T 13-10-2018 IPR001014 Ribosomal protein L23/L25, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_05365 2d6a907d781a136a08ee98df3b432aca 105 Pfam PF03551 Transcriptional regulator PadR-like family 14 86 1.7E-21 T 13-10-2018 IPR005149 Transcription regulator PadR, N-terminal RAM_05365 2d6a907d781a136a08ee98df3b432aca 105 Gene3D G3DSA:1.10.10.10 1 104 3.2E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_05365 2d6a907d781a136a08ee98df3b432aca 105 SUPERFAMILY SSF46785 3 103 6.61E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_07280 544828af1ece5981a8a80f857a436fb1 218 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 2 212 1.7E-50 T 13-10-2018 RAM_07280 544828af1ece5981a8a80f857a436fb1 218 SUPERFAMILY SSF51735 2 215 7.19E-66 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_07280 544828af1ece5981a8a80f857a436fb1 218 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 47 58 6.0E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_07280 544828af1ece5981a8a80f857a436fb1 218 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 1 16 6.0E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_07280 544828af1ece5981a8a80f857a436fb1 218 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 122 141 6.0E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_07280 544828af1ece5981a8a80f857a436fb1 218 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 143 160 6.0E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_07280 544828af1ece5981a8a80f857a436fb1 218 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 96 112 6.0E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_07280 544828af1ece5981a8a80f857a436fb1 218 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 197 6.0E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_07280 544828af1ece5981a8a80f857a436fb1 218 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 102 110 1.6E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_07280 544828af1ece5981a8a80f857a436fb1 218 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 122 141 1.6E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_07280 544828af1ece5981a8a80f857a436fb1 218 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 47 58 1.6E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_07280 544828af1ece5981a8a80f857a436fb1 218 Gene3D G3DSA:3.40.50.720 1 213 5.9E-65 T 13-10-2018 RAM_14075 99585c61a3fe9c70637a1ce28c0022c5 232 SUPERFAMILY SSF46894 157 225 6.12E-22 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_14075 99585c61a3fe9c70637a1ce28c0022c5 232 SMART SM00448 16 129 4.0E-33 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_14075 99585c61a3fe9c70637a1ce28c0022c5 232 Pfam PF00196 Bacterial regulatory proteins, luxR family 163 218 3.4E-20 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_14075 99585c61a3fe9c70637a1ce28c0022c5 232 ProSitePatterns PS00622 LuxR-type HTH domain signature. 178 205 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_14075 99585c61a3fe9c70637a1ce28c0022c5 232 Pfam PF00072 Response regulator receiver domain 18 129 2.0E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_14075 99585c61a3fe9c70637a1ce28c0022c5 232 SMART SM00421 161 218 7.4E-25 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_14075 99585c61a3fe9c70637a1ce28c0022c5 232 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 178 194 1.5E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_14075 99585c61a3fe9c70637a1ce28c0022c5 232 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 194 206 1.5E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_14075 99585c61a3fe9c70637a1ce28c0022c5 232 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 178 1.5E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_14075 99585c61a3fe9c70637a1ce28c0022c5 232 SUPERFAMILY SSF52172 16 139 5.69E-33 T 13-10-2018 IPR011006 CheY-like superfamily RAM_14075 99585c61a3fe9c70637a1ce28c0022c5 232 Gene3D G3DSA:3.40.50.12740 17 224 5.5E-67 T 13-10-2018 RAM_47715 0e33ff91aaadc79c16914b9b22d9f454 150 SMART SM00347 31 132 1.1E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_47715 0e33ff91aaadc79c16914b9b22d9f454 150 SUPERFAMILY SSF46785 42 144 9.27E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_47715 0e33ff91aaadc79c16914b9b22d9f454 150 Gene3D G3DSA:1.10.10.10 1 146 5.5E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_47715 0e33ff91aaadc79c16914b9b22d9f454 150 Pfam PF12802 MarR family 44 96 3.0E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_26780 ba8ac8b149d92890fed8d1b602eed421 353 Gene3D G3DSA:3.20.20.210 1 351 2.4E-71 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 RAM_26780 ba8ac8b149d92890fed8d1b602eed421 353 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 3 321 6.3E-16 T 13-10-2018 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 RAM_26780 ba8ac8b149d92890fed8d1b602eed421 353 SUPERFAMILY SSF51726 2 348 1.12E-46 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 RAM_13090 214625014bd66833b1fc8c82500e8998 261 Pfam PF07070 SpoOM protein 2 214 1.6E-63 T 13-10-2018 IPR009776 Sporulation stage 0, protein M RAM_42395 2f0456302bc20086273fd8231c527e76 204 Gene3D G3DSA:3.20.20.80 2 198 6.8E-21 T 13-10-2018 RAM_42395 2f0456302bc20086273fd8231c527e76 204 Pfam PF01183 Glycosyl hydrolases family 25 12 183 1.5E-11 T 13-10-2018 IPR002053 Glycoside hydrolase, family 25 GO:0003796|GO:0009253|GO:0016998 RAM_42395 2f0456302bc20086273fd8231c527e76 204 SUPERFAMILY SSF51445 8 194 1.33E-19 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_31955 9aedf3f71b594ba63c1bd876851a845e 253 SUPERFAMILY SSF53474 12 240 9.0E-36 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_31955 9aedf3f71b594ba63c1bd876851a845e 253 Pfam PF00975 Thioesterase domain 24 238 1.3E-28 T 13-10-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 RAM_31955 9aedf3f71b594ba63c1bd876851a845e 253 Gene3D G3DSA:3.40.50.1820 7 240 2.0E-43 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_07090 6506f91c74b759cd76a9d0195d5123b0 163 Pfam PF02627 Carboxymuconolactone decarboxylase family 17 96 1.1E-19 T 13-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RAM_07090 6506f91c74b759cd76a9d0195d5123b0 163 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 31 80 2.1E-20 T 13-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RAM_07090 6506f91c74b759cd76a9d0195d5123b0 163 Gene3D G3DSA:1.20.1290.10 4 149 1.2E-42 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_07090 6506f91c74b759cd76a9d0195d5123b0 163 SUPERFAMILY SSF69118 16 144 2.49E-38 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_42455 ae4adefa9fdd7f15f43f1d18ef8c4694 227 Pfam PF03473 MOSC domain 51 154 2.7E-20 T 13-10-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 RAM_42455 ae4adefa9fdd7f15f43f1d18ef8c4694 227 SUPERFAMILY SSF50800 6 220 1.94E-54 T 13-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily RAM_42455 ae4adefa9fdd7f15f43f1d18ef8c4694 227 Gene3D G3DSA:2.40.33.20 2 227 1.3E-63 T 13-10-2018 RAM_39205 1461f12c856925f11b83244c8b21ef58 121 SUPERFAMILY SSF54593 1 119 6.85E-19 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_39205 1461f12c856925f11b83244c8b21ef58 121 Gene3D G3DSA:3.10.180.10 1 121 7.1E-28 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_08890 cf2fff88622e84dc96dacdc822cd876f 63 Pfam PF00830 Ribosomal L28 family 4 59 1.5E-21 T 13-10-2018 IPR026569 Ribosomal protein L28/L24 GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_08890 cf2fff88622e84dc96dacdc822cd876f 63 TIGRFAM TIGR00009 L28: ribosomal protein bL28 2 57 3.8E-21 T 13-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_08890 cf2fff88622e84dc96dacdc822cd876f 63 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 63 16.865 T 13-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_08890 cf2fff88622e84dc96dacdc822cd876f 63 Gene3D G3DSA:2.30.170.40 3 63 1.5E-18 T 13-10-2018 IPR037147 Ribosomal protein L28/L24 superfamily GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_08890 cf2fff88622e84dc96dacdc822cd876f 63 SUPERFAMILY SSF143800 2 62 1.22E-22 T 13-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_28660 d2fe6310b3b5178b703ea70a438ebda1 102 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 66 81 5.0E-8 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_28660 d2fe6310b3b5178b703ea70a438ebda1 102 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 17 32 5.0E-8 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_28660 d2fe6310b3b5178b703ea70a438ebda1 102 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 51 66 5.0E-8 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_28660 d2fe6310b3b5178b703ea70a438ebda1 102 SUPERFAMILY SSF46785 10 94 2.5E-11 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_28660 d2fe6310b3b5178b703ea70a438ebda1 102 Gene3D G3DSA:1.10.10.10 10 102 4.4E-13 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_28660 d2fe6310b3b5178b703ea70a438ebda1 102 Pfam PF12840 Helix-turn-helix domain 15 73 9.7E-8 T 13-10-2018 RAM_28660 d2fe6310b3b5178b703ea70a438ebda1 102 SMART SM00418 15 95 9.0E-5 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_08465 09a8a141a1ebaab17b215c3938e2a8c3 274 Pfam PF03803 Scramblase 93 267 2.7E-17 T 13-10-2018 IPR005552 Scramblase RAM_08465 09a8a141a1ebaab17b215c3938e2a8c3 274 SUPERFAMILY SSF54518 100 266 7.06E-10 T 13-10-2018 IPR025659 Tubby-like, C-terminal RAM_08465 09a8a141a1ebaab17b215c3938e2a8c3 274 Pfam PF10708 Protein of unknown function (DUF2510) 8 40 2.1E-9 T 13-10-2018 IPR018929 Domain of unknown function DUF2510 RAM_08960 7b489e64a610577f585a6745da27393c 427 Pfam PF13556 PucR C-terminal helix-turn-helix domain 339 397 4.9E-20 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain RAM_08960 7b489e64a610577f585a6745da27393c 427 Gene3D G3DSA:1.10.10.2840 271 401 3.4E-23 T 13-10-2018 RAM_43395 30e8c14ed8ba2980d19178fcb74afed2 532 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 373 384 7.4E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_43395 30e8c14ed8ba2980d19178fcb74afed2 532 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 427 435 7.4E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_43395 30e8c14ed8ba2980d19178fcb74afed2 532 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 447 466 7.4E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_43395 30e8c14ed8ba2980d19178fcb74afed2 532 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 434 462 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_43395 30e8c14ed8ba2980d19178fcb74afed2 532 SUPERFAMILY SSF51735 300 520 1.67E-56 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_43395 30e8c14ed8ba2980d19178fcb74afed2 532 Gene3D G3DSA:3.40.50.720 282 530 1.3E-60 T 13-10-2018 RAM_43395 30e8c14ed8ba2980d19178fcb74afed2 532 Gene3D G3DSA:3.40.50.1820 1 278 2.1E-45 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_43395 30e8c14ed8ba2980d19178fcb74afed2 532 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 373 384 1.5E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_43395 30e8c14ed8ba2980d19178fcb74afed2 532 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 447 466 1.5E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_43395 30e8c14ed8ba2980d19178fcb74afed2 532 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 468 485 1.5E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_43395 30e8c14ed8ba2980d19178fcb74afed2 532 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 301 318 1.5E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_43395 30e8c14ed8ba2980d19178fcb74afed2 532 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 421 437 1.5E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_43395 30e8c14ed8ba2980d19178fcb74afed2 532 SUPERFAMILY SSF53474 3 275 2.95E-44 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_43395 30e8c14ed8ba2980d19178fcb74afed2 532 Pfam PF00561 alpha/beta hydrolase fold 20 138 2.2E-17 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_43395 30e8c14ed8ba2980d19178fcb74afed2 532 Pfam PF00106 short chain dehydrogenase 301 483 3.0E-46 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_00975 fdcbfa4bd117b6c29bfa155e9ce6ac59 430 Gene3D G3DSA:3.90.1150.10 3 418 1.8E-124 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_00975 fdcbfa4bd117b6c29bfa155e9ce6ac59 430 Gene3D G3DSA:3.40.640.10 59 323 1.8E-124 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_00975 fdcbfa4bd117b6c29bfa155e9ce6ac59 430 Pfam PF00202 Aminotransferase class-III 25 422 3.4E-86 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RAM_00975 fdcbfa4bd117b6c29bfa155e9ce6ac59 430 PIRSF PIRSF000521 123 425 2.7E-41 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RAM_00975 fdcbfa4bd117b6c29bfa155e9ce6ac59 430 PIRSF PIRSF000521 29 129 2.9E-5 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RAM_00975 fdcbfa4bd117b6c29bfa155e9ce6ac59 430 SUPERFAMILY SSF53383 13 422 1.4E-108 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_12145 d45a9210348e69a539e5859afa489dbe 417 Gene3D G3DSA:1.20.1250.20 9 398 6.4E-36 T 13-10-2018 RAM_12145 d45a9210348e69a539e5859afa489dbe 417 Pfam PF05977 Transmembrane secretion effector 7 406 7.7E-30 T 13-10-2018 IPR010290 Transmembrane secretion effector RAM_12145 d45a9210348e69a539e5859afa489dbe 417 SUPERFAMILY SSF103473 12 401 1.44E-43 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_13640 f9a8d6f4a784d3c74817eb11887761c7 410 SUPERFAMILY SSF53383 14 408 4.74E-119 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_13640 f9a8d6f4a784d3c74817eb11887761c7 410 Gene3D G3DSA:3.90.1150.10 23 399 2.8E-134 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_13640 f9a8d6f4a784d3c74817eb11887761c7 410 PIRSF PIRSF000521 6 175 8.0E-6 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RAM_13640 f9a8d6f4a784d3c74817eb11887761c7 410 PIRSF PIRSF000521 185 410 4.8E-27 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RAM_13640 f9a8d6f4a784d3c74817eb11887761c7 410 Gene3D G3DSA:3.40.640.10 68 318 2.8E-134 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_13640 f9a8d6f4a784d3c74817eb11887761c7 410 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 233 270 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RAM_13640 f9a8d6f4a784d3c74817eb11887761c7 410 Pfam PF00202 Aminotransferase class-III 27 408 7.6E-114 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RAM_13640 f9a8d6f4a784d3c74817eb11887761c7 410 TIGRFAM TIGR01885 Orn_aminotrans: ornithine--oxo-acid transaminase 16 408 7.4E-144 T 13-10-2018 IPR010164 Ornithine aminotransferase GO:0004587 KEGG: 00330+2.6.1.13|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|MetaCyc: PWY-6922|Reactome: R-HSA-70614 RAM_15690 131e02b71c0948aba855cf23e47b226e 280 Gene3D G3DSA:3.20.20.140 3 280 1.6E-81 T 13-10-2018 RAM_15690 131e02b71c0948aba855cf23e47b226e 280 Pfam PF04909 Amidohydrolase 6 278 9.6E-40 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RAM_15690 131e02b71c0948aba855cf23e47b226e 280 SUPERFAMILY SSF51556 6 278 1.33E-63 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_02900 b7ecac7ffdc680b743dc52ae62b5b6a6 339 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 235 3.2E-40 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 RAM_02900 b7ecac7ffdc680b743dc52ae62b5b6a6 339 Gene3D G3DSA:3.40.50.720 1 306 1.9E-50 T 13-10-2018 RAM_02900 b7ecac7ffdc680b743dc52ae62b5b6a6 339 SUPERFAMILY SSF51735 1 312 1.33E-58 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_10220 458042d454ea6e77bf6e238b888bd6f3 292 Pfam PF01435 Peptidase family M48 88 288 1.3E-19 T 13-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 RAM_10220 458042d454ea6e77bf6e238b888bd6f3 292 Gene3D G3DSA:3.30.2010.10 72 157 6.6E-7 T 13-10-2018 RAM_22885 4904ef154ab9863e64dafd03872e536c 296 SUPERFAMILY SSF53474 8 286 1.77E-63 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_22885 4904ef154ab9863e64dafd03872e536c 296 Gene3D G3DSA:3.40.50.1820 8 291 1.6E-69 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_22885 4904ef154ab9863e64dafd03872e536c 296 Pfam PF00561 alpha/beta hydrolase fold 26 141 2.5E-17 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_09400 e9ba58cac338052e3801e82a3eae9b03 371 Gene3D G3DSA:3.30.420.40 189 340 7.5E-76 T 13-10-2018 RAM_09400 e9ba58cac338052e3801e82a3eae9b03 371 Gene3D G3DSA:3.30.420.40 73 188 7.5E-76 T 13-10-2018 RAM_09400 e9ba58cac338052e3801e82a3eae9b03 371 Pfam PF00480 ROK family 70 342 1.1E-51 T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 RAM_09400 e9ba58cac338052e3801e82a3eae9b03 371 ProSitePatterns PS01125 ROK family signature. 199 226 - T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 RAM_09400 e9ba58cac338052e3801e82a3eae9b03 371 SUPERFAMILY SSF53067 68 364 1.19E-49 T 13-10-2018 RAM_09400 e9ba58cac338052e3801e82a3eae9b03 371 SUPERFAMILY SSF46785 1 56 1.98E-8 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_09400 e9ba58cac338052e3801e82a3eae9b03 371 Gene3D G3DSA:1.10.10.10 1 62 5.3E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_42865 62c75c0e5caf5517154926c852f7e777 203 TIGRFAM TIGR00505 ribA: GTP cyclohydrolase II 3 193 2.1E-65 T 13-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 RAM_42865 62c75c0e5caf5517154926c852f7e777 203 Pfam PF00925 GTP cyclohydrolase II 3 169 4.9E-63 T 13-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 RAM_42865 62c75c0e5caf5517154926c852f7e777 203 SUPERFAMILY SSF142695 2 171 2.48E-56 T 13-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 RAM_42865 62c75c0e5caf5517154926c852f7e777 203 Gene3D G3DSA:3.40.50.10990 1 173 1.1E-66 T 13-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 RAM_42865 62c75c0e5caf5517154926c852f7e777 203 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 1 195 36.873 T 13-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 RAM_02610 8a160c568feafca2720f00034b5a754d 307 Pfam PF00378 Enoyl-CoA hydratase/isomerase 38 302 1.5E-52 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RAM_02610 8a160c568feafca2720f00034b5a754d 307 Gene3D G3DSA:1.10.12.10 247 295 5.2E-26 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal RAM_02610 8a160c568feafca2720f00034b5a754d 307 TIGRFAM TIGR01929 menB: naphthoate synthase 23 301 5.1E-128 T 13-10-2018 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837 RAM_02610 8a160c568feafca2720f00034b5a754d 307 Hamap MF_01934 1,4-dihydroxy-2-naphthoyl-CoA synthase [menB]. 15 306 52.88 T 13-10-2018 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837 RAM_02610 8a160c568feafca2720f00034b5a754d 307 Gene3D G3DSA:3.90.226.10 7 246 1.8E-87 T 13-10-2018 RAM_02610 8a160c568feafca2720f00034b5a754d 307 SUPERFAMILY SSF52096 37 304 5.23E-75 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_40085 aa6020e11e5e3642a1e1e423b5ac9a25 366 Pfam PF06441 Epoxide hydrolase N terminus 3 106 3.2E-29 T 13-10-2018 IPR010497 Epoxide hydrolase, N-terminal Reactome: R-HSA-211945 RAM_40085 aa6020e11e5e3642a1e1e423b5ac9a25 366 SUPERFAMILY SSF53474 4 363 2.21E-88 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_40085 aa6020e11e5e3642a1e1e423b5ac9a25 366 PRINTS PR00412 Epoxide hydrolase signature 307 323 7.8E-14 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_40085 aa6020e11e5e3642a1e1e423b5ac9a25 366 PRINTS PR00412 Epoxide hydrolase signature 339 361 7.8E-14 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_40085 aa6020e11e5e3642a1e1e423b5ac9a25 366 PRINTS PR00412 Epoxide hydrolase signature 97 115 7.8E-14 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_40085 aa6020e11e5e3642a1e1e423b5ac9a25 366 PRINTS PR00412 Epoxide hydrolase signature 126 141 7.8E-14 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_40085 aa6020e11e5e3642a1e1e423b5ac9a25 366 PRINTS PR00412 Epoxide hydrolase signature 168 181 7.8E-14 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_40085 aa6020e11e5e3642a1e1e423b5ac9a25 366 Gene3D G3DSA:3.40.50.1820 2 366 5.7E-126 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_40085 aa6020e11e5e3642a1e1e423b5ac9a25 366 PIRSF PIRSF001112 2 366 4.2E-112 T 13-10-2018 IPR016292 Epoxide hydrolase GO:0033961 Reactome: R-HSA-211945 RAM_12335 615044ae6f401ce23f65977aec225085 252 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 138 166 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_12335 615044ae6f401ce23f65977aec225085 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 1.4E-42 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_12335 615044ae6f401ce23f65977aec225085 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.4E-42 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_12335 615044ae6f401ce23f65977aec225085 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 1.4E-42 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_12335 615044ae6f401ce23f65977aec225085 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 1.4E-42 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_12335 615044ae6f401ce23f65977aec225085 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 1.4E-42 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_12335 615044ae6f401ce23f65977aec225085 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 1.4E-42 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_12335 615044ae6f401ce23f65977aec225085 252 SUPERFAMILY SSF51735 4 246 6.08E-78 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_12335 615044ae6f401ce23f65977aec225085 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 2.1E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_12335 615044ae6f401ce23f65977aec225085 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 2.1E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_12335 615044ae6f401ce23f65977aec225085 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 2.1E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_12335 615044ae6f401ce23f65977aec225085 252 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 245 2.7E-64 T 13-10-2018 RAM_12335 615044ae6f401ce23f65977aec225085 252 Gene3D G3DSA:3.40.50.720 1 251 6.4E-81 T 13-10-2018 RAM_43670 46d2fc3dab04abd7cb01bf4d11546388 266 Pfam PF00149 Calcineurin-like phosphoesterase 5 218 3.0E-11 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 RAM_43670 46d2fc3dab04abd7cb01bf4d11546388 266 PRINTS PR00114 Serine/threonine phosphatase family signature 77 101 1.9E-6 T 13-10-2018 IPR006186 Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase GO:0016787 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_43670 46d2fc3dab04abd7cb01bf4d11546388 266 PRINTS PR00114 Serine/threonine phosphatase family signature 4 31 1.9E-6 T 13-10-2018 IPR006186 Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase GO:0016787 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_43670 46d2fc3dab04abd7cb01bf4d11546388 266 PRINTS PR00114 Serine/threonine phosphatase family signature 41 68 1.9E-6 T 13-10-2018 IPR006186 Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase GO:0016787 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_43670 46d2fc3dab04abd7cb01bf4d11546388 266 Gene3D G3DSA:3.60.21.10 1 251 2.3E-51 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like RAM_43670 46d2fc3dab04abd7cb01bf4d11546388 266 SUPERFAMILY SSF56300 4 249 4.75E-37 T 13-10-2018 RAM_33235 cc97f30d30fc1c80d39e62c1af0b2850 66 Pfam PF02426 Muconolactone delta-isomerase 14 50 2.6E-10 T 13-10-2018 IPR026029 Muconolactone isomerase domain KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185 RAM_33235 cc97f30d30fc1c80d39e62c1af0b2850 66 SUPERFAMILY SSF54909 1 51 1.29E-8 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_33235 cc97f30d30fc1c80d39e62c1af0b2850 66 Gene3D G3DSA:3.30.70.1060 13 53 5.4E-11 T 13-10-2018 RAM_01430 64974f597010fe4acbd01b1886677d8f 212 SUPERFAMILY SSF53474 6 210 7.83E-28 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_01430 64974f597010fe4acbd01b1886677d8f 212 Pfam PF12697 Alpha/beta hydrolase family 6 206 2.3E-14 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_01430 64974f597010fe4acbd01b1886677d8f 212 Gene3D G3DSA:3.40.50.1820 2 211 5.8E-32 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_17975 d34762c06b43c3338d854ce771e29703 375 Pfam PF01594 AI-2E family transporter 55 366 9.7E-61 T 13-10-2018 IPR002549 Transmembrane protein TqsA-like RAM_34100 f3eebcc1a1cb2dd97e243e336085d41f 332 SUPERFAMILY SSF51679 1 328 3.93E-58 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_34100 f3eebcc1a1cb2dd97e243e336085d41f 332 Pfam PF00296 Luciferase-like monooxygenase 1 305 1.4E-54 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_34100 f3eebcc1a1cb2dd97e243e336085d41f 332 TIGRFAM TIGR03842 F420_CPS_4043: F420-dependent oxidoreductase, CPS_4043 family 2 330 8.5E-174 T 13-10-2018 IPR022315 F420-dependent oxidoreductase-predicted, CPS4043 RAM_34100 f3eebcc1a1cb2dd97e243e336085d41f 332 Gene3D G3DSA:3.20.20.30 1 329 2.2E-70 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_33260 dbfe5d7e9ae929d0af1611a7b034afcc 146 Gene3D G3DSA:3.30.565.10 10 142 4.2E-22 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_33260 dbfe5d7e9ae929d0af1611a7b034afcc 146 SUPERFAMILY SSF55874 42 135 1.29E-6 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_33260 dbfe5d7e9ae929d0af1611a7b034afcc 146 Pfam PF13581 Histidine kinase-like ATPase domain 21 133 1.5E-10 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_46615 07722be279dedd5aa8a16b6c2176a635 510 ProSitePatterns PS00218 Amino acid permeases signature. 60 91 - T 13-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 RAM_46615 07722be279dedd5aa8a16b6c2176a635 510 Pfam PF13520 Amino acid permease 33 471 2.1E-70 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RAM_46615 07722be279dedd5aa8a16b6c2176a635 510 PIRSF PIRSF006060 4 505 1.9E-72 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RAM_46615 07722be279dedd5aa8a16b6c2176a635 510 Gene3D G3DSA:1.20.1740.10 26 472 4.6E-36 T 13-10-2018 RAM_21695 fd40d06a0130168bbb01723e282aa885 147 Pfam PF14325 Domain of unknown function (DUF4383) 18 133 9.0E-28 T 13-10-2018 IPR025492 Protein of unknown function DUF4383 RAM_18830 ffeb23f90499d97f5fc0f2326226a0b1 251 Gene3D G3DSA:3.40.50.150 2 182 1.1E-32 T 13-10-2018 RAM_18830 ffeb23f90499d97f5fc0f2326226a0b1 251 Pfam PF13649 Methyltransferase domain 42 140 4.1E-19 T 13-10-2018 RAM_18830 ffeb23f90499d97f5fc0f2326226a0b1 251 SUPERFAMILY SSF53335 4 231 3.84E-33 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_06340 d55bd149413961052c66e2fd5c50bcd4 166 SUPERFAMILY SSF46785 8 161 7.18E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_06340 d55bd149413961052c66e2fd5c50bcd4 166 Gene3D G3DSA:1.10.10.10 6 88 6.3E-14 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_06340 d55bd149413961052c66e2fd5c50bcd4 166 Pfam PF03551 Transcriptional regulator PadR-like family 11 81 2.9E-7 T 13-10-2018 IPR005149 Transcription regulator PadR, N-terminal RAM_17415 80640ec1c8f12c42e856efc2af584a01 331 Pfam PF00356 Bacterial regulatory proteins, lacI family 4 47 7.5E-16 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_17415 80640ec1c8f12c42e856efc2af584a01 331 Gene3D G3DSA:3.40.50.2300 62 303 3.7E-76 T 13-10-2018 RAM_17415 80640ec1c8f12c42e856efc2af584a01 331 Pfam PF13377 Periplasmic binding protein-like domain 169 327 6.8E-39 T 13-10-2018 RAM_17415 80640ec1c8f12c42e856efc2af584a01 331 SUPERFAMILY SSF47413 2 59 3.84E-15 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_17415 80640ec1c8f12c42e856efc2af584a01 331 Gene3D G3DSA:3.40.50.2300 160 287 3.7E-76 T 13-10-2018 RAM_17415 80640ec1c8f12c42e856efc2af584a01 331 Gene3D G3DSA:1.10.260.40 1 59 9.7E-20 T 13-10-2018 RAM_17415 80640ec1c8f12c42e856efc2af584a01 331 SMART SM00354 1 71 3.8E-23 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_17415 80640ec1c8f12c42e856efc2af584a01 331 SUPERFAMILY SSF53822 61 328 1.63E-70 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_17415 80640ec1c8f12c42e856efc2af584a01 331 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 13-10-2018 RAM_43560 8ce13bdc55750e4fb475ec2cac18dbbb 255 SUPERFAMILY SSF50969 34 228 7.85E-11 T 13-10-2018 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like RAM_43560 8ce13bdc55750e4fb475ec2cac18dbbb 255 Pfam PF05096 Glutamine cyclotransferase 10 250 6.1E-87 T 13-10-2018 IPR007788 Glutaminyl-peptide cyclotransferase GO:0016603|GO:0017186 MetaCyc: PWY-7942 RAM_45775 c48d452f8405a806eb9c508b25f472dc 144 Pfam PF03259 Roadblock/LC7 domain 16 105 2.7E-13 T 13-10-2018 IPR004942 Roadblock/LAMTOR2 domain RAM_45775 c48d452f8405a806eb9c508b25f472dc 144 Gene3D G3DSA:3.30.450.30 11 134 1.5E-32 T 13-10-2018 RAM_45775 c48d452f8405a806eb9c508b25f472dc 144 SMART SM00960 16 106 3.7E-19 T 13-10-2018 IPR004942 Roadblock/LAMTOR2 domain RAM_45775 c48d452f8405a806eb9c508b25f472dc 144 SUPERFAMILY SSF103196 12 131 1.24E-24 T 13-10-2018 RAM_22270 985bed0e47607016b2475ef800329339 116 Pfam PF04237 YjbR 14 99 3.3E-8 T 13-10-2018 IPR007351 Uncharacterised protein YjbR RAM_22270 985bed0e47607016b2475ef800329339 116 SUPERFAMILY SSF142906 1 104 4.71E-6 T 13-10-2018 IPR038056 YjbR-like superfamily RAM_46980 97cd3906239b89bc96fd9573689e7983 238 Gene3D G3DSA:3.40.50.1820 1 230 2.3E-48 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_46980 97cd3906239b89bc96fd9573689e7983 238 Pfam PF01738 Dienelactone hydrolase family 12 229 2.9E-51 T 13-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 RAM_46980 97cd3906239b89bc96fd9573689e7983 238 SUPERFAMILY SSF53474 3 230 1.87E-34 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_27530 febe9907296c93edd9ea3b64f26023c6 351 SUPERFAMILY SSF140959 157 334 1.57E-26 T 13-10-2018 IPR037217 Tryptophan/Indoleamine 2,3-dioxygenase-like GO:0019441|GO:0020037|GO:0046872 KEGG: 00380+1.13.11.11|Reactome: R-HSA-71240 RAM_27530 febe9907296c93edd9ea3b64f26023c6 351 Gene3D G3DSA:1.20.58.480 150 340 1.6E-20 T 13-10-2018 RAM_25000 bfa732503e5808df018793bf0ed0be91 263 SUPERFAMILY SSF54637 133 258 9.22E-9 T 13-10-2018 IPR029069 HotDog domain superfamily RAM_25000 bfa732503e5808df018793bf0ed0be91 263 Pfam PF13622 Thioesterase-like superfamily 21 255 2.4E-38 T 13-10-2018 RAM_25000 bfa732503e5808df018793bf0ed0be91 263 Gene3D G3DSA:3.10.129.90 21 256 4.3E-15 T 13-10-2018 RAM_34210 aa1e87884f8a40ae11cdac5194a4b1b1 154 Pfam PF00545 ribonuclease 69 148 9.1E-28 T 13-10-2018 IPR000026 Guanine-specific ribonuclease N1/T1/U2 GO:0003723|GO:0004521 RAM_34210 aa1e87884f8a40ae11cdac5194a4b1b1 154 Gene3D G3DSA:3.10.450.30 58 154 3.6E-34 T 13-10-2018 RAM_34210 aa1e87884f8a40ae11cdac5194a4b1b1 154 SUPERFAMILY SSF53933 60 152 9.92E-32 T 13-10-2018 IPR016191 Ribonuclease/ribotoxin GO:0003723|GO:0004540 RAM_45850 23af526decf7ffa6172012dacf859e00 994 Gene3D G3DSA:2.120.10.30 45 397 6.3E-56 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RAM_45850 23af526decf7ffa6172012dacf859e00 994 SUPERFAMILY SSF49299 401 480 2.09E-10 T 13-10-2018 IPR035986 PKD domain superfamily RAM_45850 23af526decf7ffa6172012dacf859e00 994 Gene3D G3DSA:2.60.40.10 398 485 1.7E-17 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_45850 23af526decf7ffa6172012dacf859e00 994 SUPERFAMILY SSF50952 32 397 1.44E-16 T 13-10-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 RAM_45850 23af526decf7ffa6172012dacf859e00 994 Pfam PF08310 LGFP repeat 790 845 4.7E-20 T 13-10-2018 IPR013207 LGFP RAM_45850 23af526decf7ffa6172012dacf859e00 994 Pfam PF08310 LGFP repeat 681 728 1.0E-8 T 13-10-2018 IPR013207 LGFP RAM_45850 23af526decf7ffa6172012dacf859e00 994 Pfam PF08310 LGFP repeat 847 902 4.5E-21 T 13-10-2018 IPR013207 LGFP RAM_45850 23af526decf7ffa6172012dacf859e00 994 Pfam PF08310 LGFP repeat 903 954 6.8E-22 T 13-10-2018 IPR013207 LGFP RAM_45850 23af526decf7ffa6172012dacf859e00 994 Pfam PF08310 LGFP repeat 732 788 2.8E-16 T 13-10-2018 IPR013207 LGFP RAM_45850 23af526decf7ffa6172012dacf859e00 994 Pfam PF07995 Glucose / Sorbosone dehydrogenase 53 358 4.0E-33 T 13-10-2018 IPR012938 Glucose/Sorbosone dehydrogenase RAM_45850 23af526decf7ffa6172012dacf859e00 994 Pfam PF00801 PKD domain 413 477 6.3E-8 T 13-10-2018 IPR000601 PKD domain RAM_45850 23af526decf7ffa6172012dacf859e00 994 SMART SM00089 401 485 2.2E-7 T 13-10-2018 IPR022409 PKD/Chitinase domain RAM_27945 72b01104e576a4e58af37e57dc45743d 211 Pfam PF00571 CBS domain 82 133 1.3E-11 T 13-10-2018 IPR000644 CBS domain RAM_27945 72b01104e576a4e58af37e57dc45743d 211 Pfam PF00571 CBS domain 6 58 2.0E-11 T 13-10-2018 IPR000644 CBS domain RAM_27945 72b01104e576a4e58af37e57dc45743d 211 SUPERFAMILY SSF54631 4 134 3.83E-29 T 13-10-2018 RAM_27945 72b01104e576a4e58af37e57dc45743d 211 SMART SM00116 13 61 1.7E-7 T 13-10-2018 IPR000644 CBS domain RAM_27945 72b01104e576a4e58af37e57dc45743d 211 SMART SM00116 89 136 6.0E-5 T 13-10-2018 IPR000644 CBS domain RAM_27945 72b01104e576a4e58af37e57dc45743d 211 PIRSF PIRSF036990 4 211 4.4E-43 T 13-10-2018 IPR017080 Uncharacterised conserved protein UCP036990, CBS, BON RAM_27945 72b01104e576a4e58af37e57dc45743d 211 Gene3D G3DSA:3.10.580.10 1 145 3.2E-33 T 13-10-2018 RAM_27945 72b01104e576a4e58af37e57dc45743d 211 Pfam PF04972 BON domain 139 205 2.7E-8 T 13-10-2018 IPR007055 BON domain RAM_37740 ea8dfbb22cfa94e429bd2d69fe8fb083 309 SUPERFAMILY SSF51679 15 306 2.88E-75 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_37740 ea8dfbb22cfa94e429bd2d69fe8fb083 309 TIGRFAM TIGR03560 F420_Rv1855c: probable F420-dependent oxidoreductase, Rv1855c family 11 230 8.5E-84 T 13-10-2018 IPR019952 F420-dependent oxidoreductase-predicted, Rv1855c RAM_37740 ea8dfbb22cfa94e429bd2d69fe8fb083 309 Gene3D G3DSA:3.20.20.30 12 308 2.8E-76 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_37740 ea8dfbb22cfa94e429bd2d69fe8fb083 309 Pfam PF00296 Luciferase-like monooxygenase 15 248 7.5E-56 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_46650 b84a97541859dfda9e26bef1c1479be4 302 Gene3D G3DSA:3.20.20.30 3 297 3.5E-53 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_46650 b84a97541859dfda9e26bef1c1479be4 302 SUPERFAMILY SSF51679 1 295 7.2E-52 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_46650 b84a97541859dfda9e26bef1c1479be4 302 TIGRFAM TIGR03564 F420_MSMEG_4879: F420-dependent oxidoreductase, MSMEG_4879 family 22 278 6.8E-97 T 13-10-2018 IPR019910 Luciferase-like, F420-dependent oxidoreductase, MSMEG4879, predicted RAM_46650 b84a97541859dfda9e26bef1c1479be4 302 Pfam PF00296 Luciferase-like monooxygenase 1 275 2.0E-36 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_10050 74e6c63fcaf3c04227163b003a26c041 178 SUPERFAMILY SSF81345 12 173 7.72E-47 T 13-10-2018 IPR037294 ABC transporter, BtuC-like RAM_10050 74e6c63fcaf3c04227163b003a26c041 178 Pfam PF01032 FecCD transport family 11 172 7.6E-51 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 RAM_10050 74e6c63fcaf3c04227163b003a26c041 178 Gene3D G3DSA:1.10.3470.10 6 176 7.1E-56 T 13-10-2018 IPR037294 ABC transporter, BtuC-like RAM_06755 b4aaed268e7fca6c4ecedb9ac979fde2 404 PRINTS PR01042 Aspartyl-tRNA synthetase signature 175 187 2.9E-13 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 RAM_06755 b4aaed268e7fca6c4ecedb9ac979fde2 404 PRINTS PR01042 Aspartyl-tRNA synthetase signature 359 373 2.9E-13 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 RAM_06755 b4aaed268e7fca6c4ecedb9ac979fde2 404 PRINTS PR01042 Aspartyl-tRNA synthetase signature 191 204 2.9E-13 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 RAM_06755 b4aaed268e7fca6c4ecedb9ac979fde2 404 SUPERFAMILY SSF50249 9 94 4.0E-15 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_06755 b4aaed268e7fca6c4ecedb9ac979fde2 404 Pfam PF01336 OB-fold nucleic acid binding domain 18 84 1.6E-8 T 13-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 RAM_06755 b4aaed268e7fca6c4ecedb9ac979fde2 404 Hamap MF_02075 Aspartate--tRNA(Asp) ligase [aspS]. 2 404 35.234 T 13-10-2018 IPR004523 Aspartate-tRNA synthetase, type 2 GO:0000166|GO:0004815|GO:0005524|GO:0005737|GO:0006422 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 RAM_06755 b4aaed268e7fca6c4ecedb9ac979fde2 404 SUPERFAMILY SSF55681 97 403 5.6E-72 T 13-10-2018 RAM_06755 b4aaed268e7fca6c4ecedb9ac979fde2 404 Pfam PF00152 tRNA synthetases class II (D, K and N) 114 398 3.7E-62 T 13-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 RAM_06755 b4aaed268e7fca6c4ecedb9ac979fde2 404 Gene3D G3DSA:3.30.930.10 98 392 5.8E-81 T 13-10-2018 RAM_06755 b4aaed268e7fca6c4ecedb9ac979fde2 404 Gene3D G3DSA:2.40.50.140 3 92 5.5E-19 T 13-10-2018 RAM_09185 4844857e426fbc1f2621ff2c3dcec59b 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 5.3E-46 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_09185 4844857e426fbc1f2621ff2c3dcec59b 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 5.3E-46 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_09185 4844857e426fbc1f2621ff2c3dcec59b 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 5.3E-46 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_09185 4844857e426fbc1f2621ff2c3dcec59b 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 5.3E-46 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_09185 4844857e426fbc1f2621ff2c3dcec59b 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 5.3E-46 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_09185 4844857e426fbc1f2621ff2c3dcec59b 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 5.3E-46 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_09185 4844857e426fbc1f2621ff2c3dcec59b 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 1.3E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_09185 4844857e426fbc1f2621ff2c3dcec59b 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 1.3E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_09185 4844857e426fbc1f2621ff2c3dcec59b 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 1.3E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_09185 4844857e426fbc1f2621ff2c3dcec59b 255 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 248 1.5E-70 T 13-10-2018 RAM_09185 4844857e426fbc1f2621ff2c3dcec59b 255 Gene3D G3DSA:3.40.50.720 3 255 8.6E-90 T 13-10-2018 RAM_09185 4844857e426fbc1f2621ff2c3dcec59b 255 SUPERFAMILY SSF51735 6 247 1.17E-81 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_47105 3fc43f80e36df85d5f38318617145cce 328 PRINTS PR00359 B-class P450 signature 81 96 9.2E-47 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_47105 3fc43f80e36df85d5f38318617145cce 328 PRINTS PR00359 B-class P450 signature 199 210 9.2E-47 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_47105 3fc43f80e36df85d5f38318617145cce 328 PRINTS PR00359 B-class P450 signature 277 288 9.2E-47 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_47105 3fc43f80e36df85d5f38318617145cce 328 PRINTS PR00359 B-class P450 signature 64 80 9.2E-47 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_47105 3fc43f80e36df85d5f38318617145cce 328 PRINTS PR00359 B-class P450 signature 18 29 9.2E-47 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_47105 3fc43f80e36df85d5f38318617145cce 328 PRINTS PR00359 B-class P450 signature 268 277 9.2E-47 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_47105 3fc43f80e36df85d5f38318617145cce 328 PRINTS PR00359 B-class P450 signature 119 141 9.2E-47 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_47105 3fc43f80e36df85d5f38318617145cce 328 PRINTS PR00359 B-class P450 signature 217 244 9.2E-47 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_47105 3fc43f80e36df85d5f38318617145cce 328 PRINTS PR00359 B-class P450 signature 245 260 9.2E-47 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_47105 3fc43f80e36df85d5f38318617145cce 328 SUPERFAMILY SSF48264 7 327 3.67E-83 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_47105 3fc43f80e36df85d5f38318617145cce 328 Pfam PF00067 Cytochrome P450 12 298 3.3E-27 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_47105 3fc43f80e36df85d5f38318617145cce 328 Gene3D G3DSA:1.10.630.10 2 328 2.6E-108 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_47105 3fc43f80e36df85d5f38318617145cce 328 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 270 279 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RAM_47105 3fc43f80e36df85d5f38318617145cce 328 PRINTS PR00385 P450 superfamily signature 268 277 2.0E-7 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_47105 3fc43f80e36df85d5f38318617145cce 328 PRINTS PR00385 P450 superfamily signature 277 288 2.0E-7 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_47105 3fc43f80e36df85d5f38318617145cce 328 PRINTS PR00385 P450 superfamily signature 164 181 2.0E-7 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_47105 3fc43f80e36df85d5f38318617145cce 328 PRINTS PR00385 P450 superfamily signature 199 210 2.0E-7 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_17005 c45d4f93ab1e082a26e3f30d64e7c0e0 332 SUPERFAMILY SSF56112 26 231 2.19E-8 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_39775 db2a5f1be8c013aec02fccfe0ece55a7 279 Gene3D G3DSA:3.20.20.30 1 265 5.5E-65 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_39775 db2a5f1be8c013aec02fccfe0ece55a7 279 SUPERFAMILY SSF51679 3 259 4.42E-54 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_39775 db2a5f1be8c013aec02fccfe0ece55a7 279 Pfam PF00296 Luciferase-like monooxygenase 15 213 2.9E-41 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_18195 ce1432f4e84e53771f6910e0b67ab27d 951 Gene3D G3DSA:2.80.10.50 815 950 2.5E-36 T 13-10-2018 RAM_18195 ce1432f4e84e53771f6910e0b67ab27d 951 Gene3D G3DSA:2.80.10.50 655 761 4.4E-25 T 13-10-2018 RAM_18195 ce1432f4e84e53771f6910e0b67ab27d 951 Gene3D G3DSA:2.80.10.50 762 814 6.7E-11 T 13-10-2018 RAM_18195 ce1432f4e84e53771f6910e0b67ab27d 951 Pfam PF07944 Beta-L-arabinofuranosidase, GH127 110 549 2.5E-68 T 13-10-2018 IPR012878 Beta-L-arabinofuranosidase, GH127 RAM_18195 ce1432f4e84e53771f6910e0b67ab27d 951 SUPERFAMILY SSF50370 675 813 3.43E-40 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_18195 ce1432f4e84e53771f6910e0b67ab27d 951 SMART SM00458 814 951 0.4 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_18195 ce1432f4e84e53771f6910e0b67ab27d 951 SMART SM00458 675 812 0.26 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_18195 ce1432f4e84e53771f6910e0b67ab27d 951 SUPERFAMILY SSF48208 94 372 3.63E-15 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_18195 ce1432f4e84e53771f6910e0b67ab27d 951 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 853 937 1.4E-18 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_18195 ce1432f4e84e53771f6910e0b67ab27d 951 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 761 844 5.2E-17 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_18195 ce1432f4e84e53771f6910e0b67ab27d 951 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 667 752 5.5E-21 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_18195 ce1432f4e84e53771f6910e0b67ab27d 951 SUPERFAMILY SSF50370 812 950 4.69E-39 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_42600 726192835ebe6eeb818b4e46dda45645 253 SUPERFAMILY SSF53474 7 241 4.38E-53 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_42600 726192835ebe6eeb818b4e46dda45645 253 Gene3D G3DSA:3.40.50.1820 5 241 8.8E-63 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_42600 726192835ebe6eeb818b4e46dda45645 253 SMART SM00824 Thioesterase 23 243 5.8E-5 T 13-10-2018 IPR020802 Polyketide synthase, thioesterase domain GO:0009058|GO:0016788 RAM_42600 726192835ebe6eeb818b4e46dda45645 253 Pfam PF00975 Thioesterase domain 21 236 2.0E-44 T 13-10-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 RAM_42875 6c2b0af86d13e436cc317f19b724f677 275 SUPERFAMILY SSF53335 13 128 1.26E-10 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_42875 6c2b0af86d13e436cc317f19b724f677 275 Gene3D G3DSA:3.40.50.150 3 147 2.5E-10 T 13-10-2018 RAM_17680 80e77d72509ddf5b62cc218ac471c983 282 Gene3D G3DSA:3.30.450.180 100 278 8.3E-7 T 13-10-2018 RAM_17680 80e77d72509ddf5b62cc218ac471c983 282 Gene3D G3DSA:1.10.260.40 2 79 5.8E-10 T 13-10-2018 RAM_17680 80e77d72509ddf5b62cc218ac471c983 282 SUPERFAMILY SSF47413 26 74 2.28E-10 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_17680 80e77d72509ddf5b62cc218ac471c983 282 Pfam PF13560 Helix-turn-helix domain 3 78 1.0E-13 T 13-10-2018 RAM_17680 80e77d72509ddf5b62cc218ac471c983 282 SMART SM00530 7 77 4.2E-8 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_06900 d39f7437bcfbf41cc6d4a5d7075d58ba 380 SUPERFAMILY SSF52743 98 352 4.45E-33 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RAM_06900 d39f7437bcfbf41cc6d4a5d7075d58ba 380 Pfam PF00082 Subtilase family 98 362 1.8E-18 T 13-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RAM_06900 d39f7437bcfbf41cc6d4a5d7075d58ba 380 Gene3D G3DSA:3.40.50.200 73 372 1.7E-39 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RAM_06950 8cd2deb779a28ab2a9c1c867d53df7d6 129 Gene3D G3DSA:3.40.50.510 1 128 8.4E-32 T 13-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 RAM_06950 8cd2deb779a28ab2a9c1c867d53df7d6 129 Pfam PF03610 PTS system fructose IIA component 5 102 9.8E-20 T 13-10-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 RAM_06950 8cd2deb779a28ab2a9c1c867d53df7d6 129 SUPERFAMILY SSF53062 2 124 9.81E-30 T 13-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 RAM_39075 8303ba73143ae10fb4115e644c5d1f4e 305 Pfam PF00561 alpha/beta hydrolase fold 28 136 7.0E-18 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_39075 8303ba73143ae10fb4115e644c5d1f4e 305 SUPERFAMILY SSF53474 2 282 1.36E-52 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_39075 8303ba73143ae10fb4115e644c5d1f4e 305 PRINTS PR00111 Alpha/beta hydrolase fold signature 227 241 1.5E-10 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_39075 8303ba73143ae10fb4115e644c5d1f4e 305 PRINTS PR00111 Alpha/beta hydrolase fold signature 53 68 1.5E-10 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_39075 8303ba73143ae10fb4115e644c5d1f4e 305 PRINTS PR00111 Alpha/beta hydrolase fold signature 97 110 1.5E-10 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_39075 8303ba73143ae10fb4115e644c5d1f4e 305 Gene3D G3DSA:3.40.50.1820 1 291 7.1E-56 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_22080 0807738f8d3eec1f856832c1cc9fa023 376 Pfam PF06441 Epoxide hydrolase N terminus 2 106 6.9E-35 T 13-10-2018 IPR010497 Epoxide hydrolase, N-terminal Reactome: R-HSA-211945 RAM_22080 0807738f8d3eec1f856832c1cc9fa023 376 PIRSF PIRSF001112 1 375 3.1E-117 T 13-10-2018 IPR016292 Epoxide hydrolase GO:0033961 Reactome: R-HSA-211945 RAM_22080 0807738f8d3eec1f856832c1cc9fa023 376 PRINTS PR00412 Epoxide hydrolase signature 171 184 4.2E-9 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_22080 0807738f8d3eec1f856832c1cc9fa023 376 PRINTS PR00412 Epoxide hydrolase signature 126 141 4.2E-9 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_22080 0807738f8d3eec1f856832c1cc9fa023 376 PRINTS PR00412 Epoxide hydrolase signature 97 115 4.2E-9 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_22080 0807738f8d3eec1f856832c1cc9fa023 376 PRINTS PR00412 Epoxide hydrolase signature 350 372 4.2E-9 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_22080 0807738f8d3eec1f856832c1cc9fa023 376 Gene3D G3DSA:3.40.50.1820 1 376 2.8E-130 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_22080 0807738f8d3eec1f856832c1cc9fa023 376 SUPERFAMILY SSF53474 2 374 3.91E-91 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_46610 b2c643920d90d67f02a92bf1f9c3e52f 317 Gene3D G3DSA:3.40.710.10 4 308 1.4E-77 T 13-10-2018 RAM_46610 b2c643920d90d67f02a92bf1f9c3e52f 317 SUPERFAMILY SSF56601 5 306 4.07E-68 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_46610 b2c643920d90d67f02a92bf1f9c3e52f 317 Pfam PF00144 Beta-lactamase 12 299 2.7E-47 T 13-10-2018 IPR001466 Beta-lactamase-related RAM_08660 b71e8ff96425c60863c1dc8481493772 288 PIRSF PIRSF017393 3 288 6.6E-74 T 13-10-2018 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type RAM_08660 b71e8ff96425c60863c1dc8481493772 288 Pfam PF04672 S-adenosyl methyltransferase 14 287 4.2E-73 T 13-10-2018 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type RAM_08660 b71e8ff96425c60863c1dc8481493772 288 SUPERFAMILY SSF53335 20 271 1.83E-37 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_08660 b71e8ff96425c60863c1dc8481493772 288 Gene3D G3DSA:3.40.50.150 4 288 2.9E-89 T 13-10-2018 RAM_34295 a1a4f2ce5808de21a7fa045e327a0133 86 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 17.154 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_34295 a1a4f2ce5808de21a7fa045e327a0133 86 Pfam PF01649 Ribosomal protein S20 2 84 1.8E-27 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_34295 a1a4f2ce5808de21a7fa045e327a0133 86 TIGRFAM TIGR00029 S20: ribosomal protein bS20 1 85 2.9E-23 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_34295 a1a4f2ce5808de21a7fa045e327a0133 86 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 14 86 2.0E-21 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_34295 a1a4f2ce5808de21a7fa045e327a0133 86 SUPERFAMILY SSF46992 3 86 8.5E-29 T 13-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_34295 a1a4f2ce5808de21a7fa045e327a0133 86 Gene3D G3DSA:1.20.58.110 1 86 2.9E-29 T 13-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_11735 ab6a4da30c28a959f145fe8242f993ad 261 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 249 1.1E-59 T 13-10-2018 RAM_11735 ab6a4da30c28a959f145fe8242f993ad 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 5.0E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_11735 ab6a4da30c28a959f145fe8242f993ad 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 5.0E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_11735 ab6a4da30c28a959f145fe8242f993ad 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 86 97 5.0E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_11735 ab6a4da30c28a959f145fe8242f993ad 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 2.9E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_11735 ab6a4da30c28a959f145fe8242f993ad 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 2.9E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_11735 ab6a4da30c28a959f145fe8242f993ad 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 2.9E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_11735 ab6a4da30c28a959f145fe8242f993ad 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 2.9E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_11735 ab6a4da30c28a959f145fe8242f993ad 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 213 233 2.9E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_11735 ab6a4da30c28a959f145fe8242f993ad 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 2.9E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_11735 ab6a4da30c28a959f145fe8242f993ad 261 Gene3D G3DSA:3.40.50.720 1 254 1.6E-75 T 13-10-2018 RAM_11735 ab6a4da30c28a959f145fe8242f993ad 261 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_11735 ab6a4da30c28a959f145fe8242f993ad 261 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 11 183 0.0011 T 13-10-2018 RAM_11735 ab6a4da30c28a959f145fe8242f993ad 261 SUPERFAMILY SSF51735 10 250 2.05E-75 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_22955 e2a14ed125742fe0e4188c05cc800875 330 SUPERFAMILY SSF47413 1 59 4.3E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_22955 e2a14ed125742fe0e4188c05cc800875 330 Pfam PF00356 Bacterial regulatory proteins, lacI family 2 45 1.4E-16 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_22955 e2a14ed125742fe0e4188c05cc800875 330 SMART SM00354 1 70 7.8E-22 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_22955 e2a14ed125742fe0e4188c05cc800875 330 Gene3D G3DSA:1.10.260.40 1 53 3.1E-20 T 13-10-2018 RAM_22955 e2a14ed125742fe0e4188c05cc800875 330 Gene3D G3DSA:3.40.50.2300 157 286 3.9E-74 T 13-10-2018 RAM_22955 e2a14ed125742fe0e4188c05cc800875 330 Gene3D G3DSA:3.40.50.2300 54 303 3.9E-74 T 13-10-2018 RAM_22955 e2a14ed125742fe0e4188c05cc800875 330 Pfam PF13377 Periplasmic binding protein-like domain 165 326 5.1E-44 T 13-10-2018 RAM_22955 e2a14ed125742fe0e4188c05cc800875 330 ProSitePatterns PS00356 LacI-type HTH domain signature. 3 21 - T 13-10-2018 RAM_22955 e2a14ed125742fe0e4188c05cc800875 330 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 2 12 9.1E-6 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_22955 e2a14ed125742fe0e4188c05cc800875 330 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 12 22 9.1E-6 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_22955 e2a14ed125742fe0e4188c05cc800875 330 SUPERFAMILY SSF53822 60 327 4.89E-71 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_08415 d7199ae009e86549819207ccb722a726 294 Pfam PF01553 Acyltransferase 86 200 4.1E-18 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 RAM_08415 d7199ae009e86549819207ccb722a726 294 SUPERFAMILY SSF69593 43 203 1.57E-17 T 13-10-2018 RAM_08415 d7199ae009e86549819207ccb722a726 294 SMART SM00563 91 203 1.1E-22 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 RAM_18510 b547e6e8b5b9d2eb4a7eb2d9d41c58d0 250 Gene3D G3DSA:3.50.30.50 2 249 3.6E-54 T 13-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 RAM_18510 b547e6e8b5b9d2eb4a7eb2d9d41c58d0 250 Pfam PF04199 Putative cyclase 9 175 5.8E-24 T 13-10-2018 IPR007325 Kynurenine formamidase/cyclase-like GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 RAM_18510 b547e6e8b5b9d2eb4a7eb2d9d41c58d0 250 SUPERFAMILY SSF102198 5 247 1.57E-40 T 13-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 RAM_05690 38e9571d333c3f29cbaf1d83c3440169 265 SUPERFAMILY SSF56112 35 187 1.12E-7 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_05690 38e9571d333c3f29cbaf1d83c3440169 265 TIGRFAM TIGR02569 TIGR02569_actnb: TIGR02569 family protein 7 257 1.0E-63 T 13-10-2018 IPR013402 Conserved hypothetical protein CHP02569 RAM_17455 eec35fef8e4c7a2a4d6af81c4be0de9a 212 Pfam PF06736 Protein of unknown function (DUF1211) 9 100 8.2E-25 T 13-10-2018 IPR010617 Endosomal/lysomomal potassium channel TMEM175 GO:0005267 RAM_30730 ae46f72d36d4cd3c89dcccf87e4ca120 307 SUPERFAMILY SSF50891 144 288 1.21E-34 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily RAM_30730 ae46f72d36d4cd3c89dcccf87e4ca120 307 Gene3D G3DSA:2.40.100.10 139 306 4.8E-39 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily RAM_30730 ae46f72d36d4cd3c89dcccf87e4ca120 307 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 147 284 1.9E-26 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 RAM_25195 1f924b90b8fec1ecc4b2203f18dcb58a 326 Gene3D G3DSA:3.40.50.410 79 289 4.3E-42 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RAM_25195 1f924b90b8fec1ecc4b2203f18dcb58a 326 SMART SM00327 88 272 5.2E-21 T 13-10-2018 IPR002035 von Willebrand factor, type A RAM_25195 1f924b90b8fec1ecc4b2203f18dcb58a 326 SUPERFAMILY SSF53300 85 288 6.68E-30 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RAM_25195 1f924b90b8fec1ecc4b2203f18dcb58a 326 Pfam PF07584 Aerotolerance regulator N-terminal 5 78 1.7E-9 T 13-10-2018 IPR024163 Aerotolerance regulator, N-terminal RAM_25195 1f924b90b8fec1ecc4b2203f18dcb58a 326 Pfam PF13519 von Willebrand factor type A domain 91 203 2.0E-18 T 13-10-2018 IPR002035 von Willebrand factor, type A RAM_39115 0435dd13c9c37959149a81f04a6a85a6 368 Pfam PF02470 MlaD protein 38 114 5.1E-15 T 13-10-2018 IPR003399 Mce/MlaD RAM_39115 0435dd13c9c37959149a81f04a6a85a6 368 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 10 297 1.1E-58 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_09365 f87f698e514521ef876b68cd205c6b7b 117 Pfam PF02656 Domain of unknown function (DUF202) 18 81 1.9E-15 T 13-10-2018 IPR003807 Domain of unknown function DUF202 RAM_46140 59ff25949cf51e8f39bfe64f4d510ad7 477 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 17 418 2.4E-36 T 13-10-2018 IPR001248 Purine-cytosine permease GO:0016020|GO:0022857|GO:0055085 RAM_46140 59ff25949cf51e8f39bfe64f4d510ad7 477 PIRSF PIRSF002744 1 476 6.3E-106 T 13-10-2018 IPR026030 Purine-cytosine permease Fcy2/21/22 GO:0005215|GO:0016021|GO:0055085 RAM_46140 59ff25949cf51e8f39bfe64f4d510ad7 477 Gene3D G3DSA:1.10.4160.10 9 434 6.7E-30 T 13-10-2018 IPR038271 Purine-cytosine permease superfamily RAM_07960 4303a017525c7ecf6caf3ac96b5301f5 162 Gene3D G3DSA:3.30.300.130 3 95 2.0E-20 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily RAM_07960 4303a017525c7ecf6caf3ac96b5301f5 162 SUPERFAMILY SSF117916 8 93 2.42E-20 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily RAM_07960 4303a017525c7ecf6caf3ac96b5301f5 162 TIGRFAM TIGR02159 PA_CoA_Oxy4: phenylacetate-CoA oxygenase, PaaJ subunit 11 162 3.8E-57 T 13-10-2018 IPR011883 Phenylacetate-CoA oxygenase, PaaJ subunit RAM_07960 4303a017525c7ecf6caf3ac96b5301f5 162 Pfam PF01883 Iron-sulfur cluster assembly protein 9 64 1.6E-12 T 13-10-2018 IPR002744 MIP18 family-like RAM_30595 eaa0839e05bea932b2fe2b814d619ab5 387 Gene3D G3DSA:3.40.50.410 205 366 1.9E-8 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RAM_30595 eaa0839e05bea932b2fe2b814d619ab5 387 SUPERFAMILY SSF53300 209 375 1.32E-25 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RAM_30595 eaa0839e05bea932b2fe2b814d619ab5 387 Pfam PF05762 VWA domain containing CoxE-like protein 149 367 2.8E-55 T 13-10-2018 IPR008912 Uncharacterised protein family CoxE-like RAM_30595 eaa0839e05bea932b2fe2b814d619ab5 387 SMART SM00327 211 370 0.0017 T 13-10-2018 IPR002035 von Willebrand factor, type A RAM_41690 c5c0139288d8a920c0dfe77454e33fe4 581 SUPERFAMILY SSF75304 2 433 6.28E-95 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RAM_41690 c5c0139288d8a920c0dfe77454e33fe4 581 Gene3D G3DSA:3.90.1300.10 1 443 2.0E-104 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RAM_41690 c5c0139288d8a920c0dfe77454e33fe4 581 Pfam PF01425 Amidase 16 418 1.4E-74 T 13-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RAM_00320 8dd76ec32856d0c0c6664393218bf5f3 194 Gene3D G3DSA:2.40.260.10 45 194 1.3E-23 T 13-10-2018 IPR023365 Sortase domain superfamily RAM_00320 8dd76ec32856d0c0c6664393218bf5f3 194 Pfam PF04203 Sortase family 52 191 7.6E-16 T 13-10-2018 IPR005754 Sortase family RAM_00320 8dd76ec32856d0c0c6664393218bf5f3 194 SUPERFAMILY SSF63817 83 192 1.22E-12 T 13-10-2018 IPR023365 Sortase domain superfamily RAM_46275 bfa6590b142c05d1b7c2dd7a1ea7f502 310 Pfam PF06089 L-asparaginase II 7 305 1.7E-111 T 13-10-2018 IPR010349 L-asparaginase II RAM_11825 6a63589aa906883e5e7ded89e14cf626 490 ProSitePatterns PS00982 Bacterial-type phytoene dehydrogenase signature. 459 479 - T 13-10-2018 IPR008150 Phytoene dehydrogenase, bacterial-type, conserved site RAM_11825 6a63589aa906883e5e7ded89e14cf626 490 TIGRFAM TIGR02734 crtI_fam: phytoene desaturase 11 489 1.2E-142 T 13-10-2018 IPR014105 Carotenoid/retinoid oxidoreductase GO:0016117|GO:0055114 RAM_11825 6a63589aa906883e5e7ded89e14cf626 490 SUPERFAMILY SSF51905 10 488 2.41E-58 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_11825 6a63589aa906883e5e7ded89e14cf626 490 Pfam PF01593 Flavin containing amine oxidoreductase 18 487 3.2E-36 T 13-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 RAM_11825 6a63589aa906883e5e7ded89e14cf626 490 Gene3D G3DSA:3.50.50.60 205 319 4.7E-13 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_11825 6a63589aa906883e5e7ded89e14cf626 490 Gene3D G3DSA:3.50.50.60 8 110 4.1E-20 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_23195 413d24c114c2fd497bf88c0b78b72f56 574 Gene3D G3DSA:2.60.120.260 30 157 1.3E-38 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_23195 413d24c114c2fd497bf88c0b78b72f56 574 SUPERFAMILY SSF51445 175 468 5.28E-36 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_23195 413d24c114c2fd497bf88c0b78b72f56 574 Gene3D G3DSA:3.20.20.80 175 470 6.9E-30 T 13-10-2018 RAM_23195 413d24c114c2fd497bf88c0b78b72f56 574 SUPERFAMILY SSF49785 37 157 7.8E-32 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_23195 413d24c114c2fd497bf88c0b78b72f56 574 Pfam PF00754 F5/8 type C domain 40 152 2.8E-27 T 13-10-2018 IPR000421 Coagulation factor 5/8 C-terminal domain RAM_23195 413d24c114c2fd497bf88c0b78b72f56 574 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 259 386 1.8E-6 T 13-10-2018 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 RAM_26580 dd55b0ff3b0cc4da8075b027955a7edc 154 Gene3D G3DSA:3.30.530.20 2 138 1.1E-34 T 13-10-2018 IPR023393 START-like domain superfamily RAM_26580 dd55b0ff3b0cc4da8075b027955a7edc 154 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 10 128 1.7E-18 T 13-10-2018 IPR005031 Coenzyme Q-binding protein COQ10, START domain Reactome: R-HSA-611105 RAM_26580 dd55b0ff3b0cc4da8075b027955a7edc 154 SUPERFAMILY SSF55961 1 139 3.54E-26 T 13-10-2018 RAM_00825 336a8200e2023166b5c6b755a4ac9e2b 491 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 6 466 9.4E-163 T 13-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 RAM_00825 336a8200e2023166b5c6b755a4ac9e2b 491 PIRSF PIRSF006446 1 486 8.6E-136 T 13-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 RAM_08220 d2933b1f4026702c410593296d0a37f2 318 Gene3D G3DSA:3.20.20.80 30 318 4.4E-102 T 13-10-2018 RAM_08220 d2933b1f4026702c410593296d0a37f2 318 Pfam PF00704 Glycosyl hydrolases family 18 84 231 3.3E-10 T 13-10-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 RAM_08220 d2933b1f4026702c410593296d0a37f2 318 SUPERFAMILY SSF51445 42 290 1.98E-19 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_47230 77d771c84b1dbfa1741141fc3572e9ae 299 SMART SM00062 60 286 1.7E-44 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RAM_47230 77d771c84b1dbfa1741141fc3572e9ae 299 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 82 95 - T 13-10-2018 IPR018313 Solute-binding protein family 3, conserved site RAM_47230 77d771c84b1dbfa1741141fc3572e9ae 299 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 62 283 8.1E-54 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RAM_47230 77d771c84b1dbfa1741141fc3572e9ae 299 Gene3D G3DSA:3.40.190.10 143 245 4.1E-62 T 13-10-2018 RAM_47230 77d771c84b1dbfa1741141fc3572e9ae 299 Gene3D G3DSA:3.40.190.10 63 282 4.1E-62 T 13-10-2018 RAM_47230 77d771c84b1dbfa1741141fc3572e9ae 299 SUPERFAMILY SSF53850 50 284 2.25E-54 T 13-10-2018 RAM_15725 fee19901bb4bd6844ee11e42e353611a 285 Pfam PF00248 Aldo/keto reductase family 4 277 8.0E-48 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain RAM_15725 fee19901bb4bd6844ee11e42e353611a 285 Gene3D G3DSA:3.20.20.100 1 281 4.7E-65 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_15725 fee19901bb4bd6844ee11e42e353611a 285 SUPERFAMILY SSF51430 4 281 2.62E-62 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_10575 d7e309de9f75ca588ce74eb3d8ce0e44 1059 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 889 963 6.7E-14 T 13-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 RAM_10575 d7e309de9f75ca588ce74eb3d8ce0e44 1059 Gene3D G3DSA:2.180.10.10 618 963 4.3E-13 T 13-10-2018 RAM_10575 d7e309de9f75ca588ce74eb3d8ce0e44 1059 Gene3D G3DSA:3.90.930.1 200 349 1.8E-7 T 13-10-2018 RAM_10575 d7e309de9f75ca588ce74eb3d8ce0e44 1059 Pfam PF05593 RHS Repeat 475 506 2.7E-5 T 13-10-2018 IPR031325 RHS repeat RAM_10575 d7e309de9f75ca588ce74eb3d8ce0e44 1059 Pfam PF05593 RHS Repeat 622 659 2.8E-7 T 13-10-2018 IPR031325 RHS repeat RAM_10575 d7e309de9f75ca588ce74eb3d8ce0e44 1059 Pfam PF05593 RHS Repeat 300 334 3.9E-8 T 13-10-2018 IPR031325 RHS repeat RAM_10575 d7e309de9f75ca588ce74eb3d8ce0e44 1059 Pfam PF05593 RHS Repeat 261 292 6.2E-6 T 13-10-2018 IPR031325 RHS repeat RAM_10575 d7e309de9f75ca588ce74eb3d8ce0e44 1059 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 477 504 1.9E-4 T 13-10-2018 IPR006530 YD repeat RAM_10575 d7e309de9f75ca588ce74eb3d8ce0e44 1059 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 622 660 2.4E-8 T 13-10-2018 IPR006530 YD repeat RAM_10575 d7e309de9f75ca588ce74eb3d8ce0e44 1059 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 300 330 7.1E-4 T 13-10-2018 IPR006530 YD repeat RAM_12730 06cc79ecd22af27399c343aeb09266d7 386 Pfam PF04434 SWIM zinc finger 125 144 4.3E-6 T 13-10-2018 IPR007527 Zinc finger, SWIM-type GO:0008270 RAM_20125 1275aa52f443ab93b4e1092904c1b0a8 222 SUPERFAMILY SSF46689 9 79 8.72E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_20125 1275aa52f443ab93b4e1092904c1b0a8 222 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 65 1.7E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_20125 1275aa52f443ab93b4e1092904c1b0a8 222 Gene3D G3DSA:1.10.357.10 10 221 2.4E-61 T 13-10-2018 RAM_47530 ecebf1e7f71122818c40054573549dd1 231 Gene3D G3DSA:3.40.50.150 22 231 5.2E-66 T 13-10-2018 RAM_47530 ecebf1e7f71122818c40054573549dd1 231 Pfam PF02390 Putative methyltransferase 59 222 9.1E-51 T 13-10-2018 RAM_47530 ecebf1e7f71122818c40054573549dd1 231 SUPERFAMILY SSF53335 10 230 4.97E-31 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_47530 ecebf1e7f71122818c40054573549dd1 231 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 49 230 2.0E-46 T 13-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 RAM_47530 ecebf1e7f71122818c40054573549dd1 231 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 16 231 29.188 T 13-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 RAM_30770 665e5f761d270ea12cb45fb404fc6f60 181 SUPERFAMILY SSF48498 76 173 9.45E-15 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_30770 665e5f761d270ea12cb45fb404fc6f60 181 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 58 2.0E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_30770 665e5f761d270ea12cb45fb404fc6f60 181 SUPERFAMILY SSF46689 2 73 3.23E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_30770 665e5f761d270ea12cb45fb404fc6f60 181 Gene3D G3DSA:1.10.357.10 1 177 2.9E-35 T 13-10-2018 RAM_30770 665e5f761d270ea12cb45fb404fc6f60 181 Pfam PF13305 WHG domain 81 155 4.7E-12 T 13-10-2018 IPR025996 WHG domain RAM_33665 d173f662674ee61c2a3d093204856d21 145 Gene3D G3DSA:2.30.110.10 10 136 2.6E-28 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_33665 d173f662674ee61c2a3d093204856d21 145 TIGRFAM TIGR03618 Rv1155_F420: PPOX class probable F420-dependent enzyme 17 133 2.7E-32 T 13-10-2018 IPR019920 F420-binding domain, putative RAM_33665 d173f662674ee61c2a3d093204856d21 145 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 13 97 4.0E-12 T 13-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RAM_33665 d173f662674ee61c2a3d093204856d21 145 SUPERFAMILY SSF50475 9 142 1.87E-22 T 13-10-2018 RAM_05175 5b708f8eb04c313ee894c36e040448c0 298 Gene3D G3DSA:1.10.340.30 113 228 2.0E-16 T 13-10-2018 RAM_05175 5b708f8eb04c313ee894c36e040448c0 298 SUPERFAMILY SSF48150 102 283 1.74E-24 T 13-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 RAM_21825 a01a4453cb8b810d408300a29fb8319e 530 Gene3D G3DSA:3.90.660.50 223 427 4.9E-10 T 13-10-2018 RAM_21825 a01a4453cb8b810d408300a29fb8319e 530 Gene3D G3DSA:3.50.50.60 226 313 4.9E-10 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_21825 a01a4453cb8b810d408300a29fb8319e 530 SUPERFAMILY SSF51905 6 497 6.17E-40 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_21825 a01a4453cb8b810d408300a29fb8319e 530 Gene3D G3DSA:3.50.50.60 5 118 3.4E-14 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_21825 a01a4453cb8b810d408300a29fb8319e 530 Pfam PF01593 Flavin containing amine oxidoreductase 17 293 4.0E-12 T 13-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 RAM_11455 c6aed6d55ed1db6665054530b91c330c 215 Gene3D G3DSA:3.40.50.12740 11 214 4.5E-38 T 13-10-2018 RAM_11455 c6aed6d55ed1db6665054530b91c330c 215 SUPERFAMILY SSF52172 11 138 1.31E-16 T 13-10-2018 IPR011006 CheY-like superfamily RAM_11455 c6aed6d55ed1db6665054530b91c330c 215 Pfam PF00196 Bacterial regulatory proteins, luxR family 153 207 5.2E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_11455 c6aed6d55ed1db6665054530b91c330c 215 Pfam PF00072 Response regulator receiver domain 15 122 3.7E-12 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_11455 c6aed6d55ed1db6665054530b91c330c 215 SMART SM00421 151 208 1.4E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_11455 c6aed6d55ed1db6665054530b91c330c 215 SMART SM00448 11 121 6.3E-10 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_11455 c6aed6d55ed1db6665054530b91c330c 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 168 184 2.4E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_11455 c6aed6d55ed1db6665054530b91c330c 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 184 196 2.4E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_11455 c6aed6d55ed1db6665054530b91c330c 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 154 168 2.4E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_11455 c6aed6d55ed1db6665054530b91c330c 215 SUPERFAMILY SSF46894 145 214 1.02E-16 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_23085 88c4c169d426d79ba231ec981859d80a 118 Pfam PF04237 YjbR 24 100 1.4E-10 T 13-10-2018 IPR007351 Uncharacterised protein YjbR RAM_23085 88c4c169d426d79ba231ec981859d80a 118 SUPERFAMILY SSF142906 23 106 7.98E-8 T 13-10-2018 IPR038056 YjbR-like superfamily RAM_09575 2b277bd50e3ee0e7180fd111bbb14c12 332 SUPERFAMILY SSF53822 50 321 2.54E-51 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_09575 2b277bd50e3ee0e7180fd111bbb14c12 332 Pfam PF13407 Periplasmic binding protein domain 52 296 3.1E-38 T 13-10-2018 IPR025997 Periplasmic binding protein RAM_09575 2b277bd50e3ee0e7180fd111bbb14c12 332 Gene3D G3DSA:3.40.50.2300 61 313 8.2E-78 T 13-10-2018 RAM_09575 2b277bd50e3ee0e7180fd111bbb14c12 332 Gene3D G3DSA:3.40.50.2300 155 315 8.2E-78 T 13-10-2018 RAM_31940 acf820211c03ff34a32b20a2d5cc0fdb 346 SUPERFAMILY SSF51735 16 345 3.85E-51 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_31940 acf820211c03ff34a32b20a2d5cc0fdb 346 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 33 244 9.3E-30 T 13-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 RAM_31940 acf820211c03ff34a32b20a2d5cc0fdb 346 Gene3D G3DSA:3.40.50.720 143 319 7.7E-76 T 13-10-2018 RAM_31940 acf820211c03ff34a32b20a2d5cc0fdb 346 Gene3D G3DSA:3.30.1780.10 22 341 7.7E-76 T 13-10-2018 IPR023401 Ornithine cyclodeaminase, N-terminal Reactome: R-HSA-71064 RAM_31940 acf820211c03ff34a32b20a2d5cc0fdb 346 PIRSF PIRSF001439 11 346 9.4E-48 T 13-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 RAM_45925 866c2a43ff0da7c6d17d3237aadfec7f 312 Pfam PF09587 Bacterial capsule synthesis protein PGA_cap 3 243 7.1E-48 T 13-10-2018 IPR019079 Capsule synthesis protein, CapA RAM_45925 866c2a43ff0da7c6d17d3237aadfec7f 312 SMART SM00854 3 244 5.5E-47 T 13-10-2018 IPR019079 Capsule synthesis protein, CapA RAM_45925 866c2a43ff0da7c6d17d3237aadfec7f 312 SUPERFAMILY SSF56300 2 242 1.39E-28 T 13-10-2018 RAM_15355 4d38821ea8ec0e90531a2ed70a602fd2 281 PRINTS PR00111 Alpha/beta hydrolase fold signature 48 63 6.4E-7 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_15355 4d38821ea8ec0e90531a2ed70a602fd2 281 PRINTS PR00111 Alpha/beta hydrolase fold signature 94 107 6.4E-7 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_15355 4d38821ea8ec0e90531a2ed70a602fd2 281 PRINTS PR00111 Alpha/beta hydrolase fold signature 108 121 6.4E-7 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_15355 4d38821ea8ec0e90531a2ed70a602fd2 281 SUPERFAMILY SSF53474 8 280 6.7E-50 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_15355 4d38821ea8ec0e90531a2ed70a602fd2 281 Pfam PF00561 alpha/beta hydrolase fold 23 267 1.4E-23 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_15355 4d38821ea8ec0e90531a2ed70a602fd2 281 Gene3D G3DSA:3.40.50.1820 3 281 8.1E-54 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_25790 3060ef6cc7e16bac7809ab9086ca7889 544 SMART SM00633 277 543 1.0E-70 T 13-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_25790 3060ef6cc7e16bac7809ab9086ca7889 544 Pfam PF00331 Glycosyl hydrolase family 10 244 540 1.6E-81 T 13-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_25790 3060ef6cc7e16bac7809ab9086ca7889 544 Gene3D G3DSA:3.20.20.80 236 544 2.7E-91 T 13-10-2018 RAM_25790 3060ef6cc7e16bac7809ab9086ca7889 544 PRINTS PR00134 Glycosyl hydrolase family 10 signature 308 320 5.7E-12 T 13-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_25790 3060ef6cc7e16bac7809ab9086ca7889 544 PRINTS PR00134 Glycosyl hydrolase family 10 signature 348 359 5.7E-12 T 13-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_25790 3060ef6cc7e16bac7809ab9086ca7889 544 PRINTS PR00134 Glycosyl hydrolase family 10 signature 394 405 5.7E-12 T 13-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_25790 3060ef6cc7e16bac7809ab9086ca7889 544 PRINTS PR00134 Glycosyl hydrolase family 10 signature 423 435 5.7E-12 T 13-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_25790 3060ef6cc7e16bac7809ab9086ca7889 544 SUPERFAMILY SSF51445 236 541 1.0E-87 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_19510 5166af5955e0c4b0e71fb1a69cb8759b 163 Gene3D G3DSA:3.10.129.10 4 155 1.6E-33 T 13-10-2018 RAM_19510 5166af5955e0c4b0e71fb1a69cb8759b 163 Pfam PF13452 N-terminal half of MaoC dehydratase 21 145 7.5E-8 T 13-10-2018 IPR039569 N-terminal of MaoC-like dehydratase Reactome: R-HSA-193368|Reactome: R-HSA-2046106|Reactome: R-HSA-389887|Reactome: R-HSA-390247|Reactome: R-HSA-9033241|Reactome: R-HSA-9033500 RAM_19510 5166af5955e0c4b0e71fb1a69cb8759b 163 SUPERFAMILY SSF54637 12 157 1.01E-26 T 13-10-2018 IPR029069 HotDog domain superfamily RAM_45820 96a5140e2fe8561adc647cf8f5b6f638 384 Pfam PF07730 Histidine kinase 188 252 9.2E-15 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_45820 96a5140e2fe8561adc647cf8f5b6f638 384 SUPERFAMILY SSF55874 268 367 1.77E-7 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_45820 96a5140e2fe8561adc647cf8f5b6f638 384 Gene3D G3DSA:3.30.565.10 261 381 2.5E-23 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_20690 6bb913c25c72f65a60443df8e5c12d80 262 Pfam PF07848 PaaX-like protein 2 64 1.5E-10 T 13-10-2018 IPR012906 PaaX-like, N-terminal RAM_20690 6bb913c25c72f65a60443df8e5c12d80 262 Pfam PF08223 PaaX-like protein C-terminal domain 161 247 4.3E-10 T 13-10-2018 IPR013225 PaaX-like, C-terminal RAM_20690 6bb913c25c72f65a60443df8e5c12d80 262 PIRSF PIRSF020623 1 262 9.8E-52 T 13-10-2018 IPR011965 Phenylacetic acid degradation operon negative regulatory protein PaaX GO:0006351 RAM_20690 6bb913c25c72f65a60443df8e5c12d80 262 Gene3D G3DSA:1.10.10.10 1 77 1.3E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_01170 8c8de3088266489311346fd2206fca3c 106 Pfam PF04138 GtrA-like protein 9 98 4.9E-14 T 13-10-2018 IPR007267 GtrA-like protein GO:0000271|GO:0016021 RAM_06420 cc875bad2ac1b4a2c7b30fbebb13dc41 508 ProSitePatterns PS00488 Phenylalanine and histidine ammonia-lyases signature. 140 156 - T 13-10-2018 IPR022313 Phenylalanine/histidine ammonia-lyases, active site GO:0016841 Reactome: R-HSA-70921 RAM_06420 cc875bad2ac1b4a2c7b30fbebb13dc41 508 Pfam PF00221 Aromatic amino acid lyase 12 472 2.4E-179 T 13-10-2018 IPR001106 Aromatic amino acid lyase Reactome: R-HSA-70921 RAM_06420 cc875bad2ac1b4a2c7b30fbebb13dc41 508 TIGRFAM TIGR01225 hutH: histidine ammonia-lyase 5 505 1.2E-198 T 13-10-2018 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RAM_06420 cc875bad2ac1b4a2c7b30fbebb13dc41 508 Gene3D G3DSA:1.10.275.10 2 198 2.2E-62 T 13-10-2018 IPR024083 Fumarase/histidase, N-terminal RAM_06420 cc875bad2ac1b4a2c7b30fbebb13dc41 508 SUPERFAMILY SSF48557 3 501 7.85E-180 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 RAM_06420 cc875bad2ac1b4a2c7b30fbebb13dc41 508 Gene3D G3DSA:1.20.200.10 199 508 1.4E-111 T 13-10-2018 RAM_38585 463eb7250899864df0931bf585f4ea4f 164 SUPERFAMILY SSF88659 78 161 3.55E-16 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_38585 463eb7250899864df0931bf585f4ea4f 164 Gene3D G3DSA:1.10.1740.10 3 74 6.5E-8 T 13-10-2018 RAM_38585 463eb7250899864df0931bf585f4ea4f 164 Gene3D G3DSA:1.10.10.10 85 162 2.1E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_38585 463eb7250899864df0931bf585f4ea4f 164 SUPERFAMILY SSF88946 8 89 2.2E-9 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_38585 463eb7250899864df0931bf585f4ea4f 164 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 8 159 1.8E-23 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_38585 463eb7250899864df0931bf585f4ea4f 164 Pfam PF04542 Sigma-70 region 2 11 68 9.5E-7 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_38585 463eb7250899864df0931bf585f4ea4f 164 Pfam PF08281 Sigma-70, region 4 105 157 2.4E-10 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_38215 8f70607c043979e9a93e21e65d23b4f3 393 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 300 1.2E-45 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAM_38215 8f70607c043979e9a93e21e65d23b4f3 393 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 233 249 2.7E-19 T 13-10-2018 RAM_38215 8f70607c043979e9a93e21e65d23b4f3 393 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 103 121 2.7E-19 T 13-10-2018 RAM_38215 8f70607c043979e9a93e21e65d23b4f3 393 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 2.7E-19 T 13-10-2018 RAM_38215 8f70607c043979e9a93e21e65d23b4f3 393 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 257 279 2.7E-19 T 13-10-2018 RAM_38215 8f70607c043979e9a93e21e65d23b4f3 393 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 2.7E-19 T 13-10-2018 RAM_38215 8f70607c043979e9a93e21e65d23b4f3 393 Gene3D G3DSA:3.50.50.60 7 302 1.3E-93 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_38215 8f70607c043979e9a93e21e65d23b4f3 393 Gene3D G3DSA:3.50.50.60 116 240 1.3E-93 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_38215 8f70607c043979e9a93e21e65d23b4f3 393 Gene3D G3DSA:3.30.390.30 321 390 4.5E-10 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RAM_38215 8f70607c043979e9a93e21e65d23b4f3 393 SUPERFAMILY SSF55424 313 387 1.01E-17 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RAM_38215 8f70607c043979e9a93e21e65d23b4f3 393 SUPERFAMILY SSF51905 4 312 7.66E-40 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_38215 8f70607c043979e9a93e21e65d23b4f3 393 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 147 172 2.9E-15 T 13-10-2018 RAM_38215 8f70607c043979e9a93e21e65d23b4f3 393 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 2.9E-15 T 13-10-2018 RAM_38215 8f70607c043979e9a93e21e65d23b4f3 393 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 272 279 2.9E-15 T 13-10-2018 RAM_38215 8f70607c043979e9a93e21e65d23b4f3 393 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 234 248 2.9E-15 T 13-10-2018 RAM_38215 8f70607c043979e9a93e21e65d23b4f3 393 Pfam PF14759 Reductase C-terminal 321 385 2.0E-8 T 13-10-2018 IPR028202 Reductase, C-terminal RAM_16025 a42e1aabac574b53062b3eb6b40760dd 354 Gene3D G3DSA:3.30.565.10 219 348 4.4E-25 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_16025 a42e1aabac574b53062b3eb6b40760dd 354 SMART SM00387 256 351 2.3E-9 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_16025 a42e1aabac574b53062b3eb6b40760dd 354 SUPERFAMILY SSF55874 243 347 1.09E-17 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_16025 a42e1aabac574b53062b3eb6b40760dd 354 Pfam PF07730 Histidine kinase 153 218 2.2E-11 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_16025 a42e1aabac574b53062b3eb6b40760dd 354 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 260 347 1.9E-7 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_46410 0d5ad09f8f612fad2924f7cc08f64396 581 Pfam PF00664 ABC transporter transmembrane region 31 295 3.1E-23 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 RAM_46410 0d5ad09f8f612fad2924f7cc08f64396 581 SUPERFAMILY SSF90123 14 322 4.71E-51 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RAM_46410 0d5ad09f8f612fad2924f7cc08f64396 581 SUPERFAMILY SSF52540 335 578 4.0E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_46410 0d5ad09f8f612fad2924f7cc08f64396 581 Gene3D G3DSA:3.40.50.300 335 581 8.8E-69 T 13-10-2018 RAM_46410 0d5ad09f8f612fad2924f7cc08f64396 581 Gene3D G3DSA:1.20.1560.10 3 327 3.4E-46 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RAM_46410 0d5ad09f8f612fad2924f7cc08f64396 581 Pfam PF00005 ABC transporter 357 510 2.0E-22 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_46410 0d5ad09f8f612fad2924f7cc08f64396 581 SMART SM00382 366 556 2.8E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_06110 5c6c66c78a9e8c3d2302dd1a8d757dad 276 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 91 261 5.4E-14 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_06110 5c6c66c78a9e8c3d2302dd1a8d757dad 276 Gene3D G3DSA:1.10.3720.10 15 274 7.7E-43 T 13-10-2018 IPR035906 MetI-like superfamily RAM_06110 5c6c66c78a9e8c3d2302dd1a8d757dad 276 SUPERFAMILY SSF161098 16 269 2.09E-43 T 13-10-2018 IPR035906 MetI-like superfamily RAM_31310 83c3f92020ba9215ae1df6b09b1334c9 320 Pfam PF03741 Integral membrane protein TerC family 69 272 1.8E-50 T 13-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 RAM_31310 83c3f92020ba9215ae1df6b09b1334c9 320 TIGRFAM TIGR03718 R_switched_Alx: integral membrane protein, TerC family 4 311 4.0E-117 T 13-10-2018 IPR022369 Integral membrane protein TerC, riboswitch-linked GO:0016021 RAM_16410 8ba9a1565919b05afdf776197fd3293e 672 Pfam PF04185 Phosphoesterase family 44 424 4.1E-120 T 13-10-2018 IPR007312 Phosphoesterase GO:0016788 RAM_16410 8ba9a1565919b05afdf776197fd3293e 672 Pfam PF05506 Domain of unknown function (DUF756) 576 656 9.6E-12 T 13-10-2018 IPR008475 Bacterial phospholipase C, C-terminal domain GO:0004629|GO:0016042 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3|MetaCyc: PWY-7782|MetaCyc: PWY-7783 RAM_16410 8ba9a1565919b05afdf776197fd3293e 672 Pfam PF05506 Domain of unknown function (DUF756) 492 570 8.7E-17 T 13-10-2018 IPR008475 Bacterial phospholipase C, C-terminal domain GO:0004629|GO:0016042 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3|MetaCyc: PWY-7782|MetaCyc: PWY-7783 RAM_16410 8ba9a1565919b05afdf776197fd3293e 672 TIGRFAM TIGR03396 PC_PLC: phospholipase C, phosphocholine-specific 5 668 6.9E-256 T 13-10-2018 IPR017767 Bacterial phospholipase C, phosphocholine-specific GO:0034480 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3|MetaCyc: PWY-7782|MetaCyc: PWY-7783 RAM_16410 8ba9a1565919b05afdf776197fd3293e 672 SUPERFAMILY SSF53649 146 414 5.23E-6 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 RAM_16410 8ba9a1565919b05afdf776197fd3293e 672 Gene3D G3DSA:3.40.720.10 284 473 1.7E-52 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 RAM_16410 8ba9a1565919b05afdf776197fd3293e 672 Gene3D G3DSA:3.40.720.10 34 191 4.4E-30 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 RAM_06670 ed68c4595a936e1b7f3057d3bf6de24e 187 SUPERFAMILY SSF48498 79 164 4.77E-12 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_06670 ed68c4595a936e1b7f3057d3bf6de24e 187 Pfam PF13305 WHG domain 81 162 8.3E-11 T 13-10-2018 IPR025996 WHG domain RAM_06670 ed68c4595a936e1b7f3057d3bf6de24e 187 Gene3D G3DSA:1.10.357.10 1 185 3.8E-34 T 13-10-2018 RAM_06670 ed68c4595a936e1b7f3057d3bf6de24e 187 Pfam PF00440 Bacterial regulatory proteins, tetR family 5 50 1.2E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_06670 ed68c4595a936e1b7f3057d3bf6de24e 187 SUPERFAMILY SSF46689 2 71 5.99E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_23365 d3b02805612ef6b03695ba4d26f6f0b8 365 Gene3D G3DSA:3.40.50.10350 2 351 1.2E-122 T 13-10-2018 IPR018197 Glycerate kinase, restriction-enzyme-like fold RAM_23365 d3b02805612ef6b03695ba4d26f6f0b8 365 PIRSF PIRSF006078 1 365 2.2E-117 T 13-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 RAM_23365 d3b02805612ef6b03695ba4d26f6f0b8 365 Gene3D G3DSA:3.90.1510.10 43 265 1.2E-122 T 13-10-2018 IPR018193 Glycerate kinase, flavodoxin-like fold GO:0008887|GO:0031388 RAM_23365 d3b02805612ef6b03695ba4d26f6f0b8 365 TIGRFAM TIGR00045 TIGR00045: glycerate kinase 2 359 2.3E-110 T 13-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 RAM_23365 d3b02805612ef6b03695ba4d26f6f0b8 365 Pfam PF02595 Glycerate kinase family 3 359 5.8E-127 T 13-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 RAM_23365 d3b02805612ef6b03695ba4d26f6f0b8 365 SUPERFAMILY SSF110738 2 359 2.88E-111 T 13-10-2018 IPR036129 Glycerate kinase superfamily GO:0008887|GO:0031388 RAM_26750 639dea2d66a7c08e1f2c1c938371cbe2 564 SUPERFAMILY SSF49785 28 153 2.34E-34 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_26750 639dea2d66a7c08e1f2c1c938371cbe2 564 SUPERFAMILY SSF49785 162 296 9.22E-27 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_26750 639dea2d66a7c08e1f2c1c938371cbe2 564 Pfam PF00754 F5/8 type C domain 36 148 3.4E-28 T 13-10-2018 IPR000421 Coagulation factor 5/8 C-terminal domain RAM_26750 639dea2d66a7c08e1f2c1c938371cbe2 564 Pfam PF00754 F5/8 type C domain 172 290 8.2E-22 T 13-10-2018 IPR000421 Coagulation factor 5/8 C-terminal domain RAM_26750 639dea2d66a7c08e1f2c1c938371cbe2 564 Pfam PF00722 Glycosyl hydrolases family 16 352 561 1.7E-33 T 13-10-2018 IPR000757 Glycoside hydrolase family 16 GO:0004553|GO:0005975 RAM_26750 639dea2d66a7c08e1f2c1c938371cbe2 564 SUPERFAMILY SSF49899 305 564 3.27E-70 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily RAM_26750 639dea2d66a7c08e1f2c1c938371cbe2 564 Gene3D G3DSA:2.60.120.200 315 564 2.0E-81 T 13-10-2018 RAM_26750 639dea2d66a7c08e1f2c1c938371cbe2 564 Gene3D G3DSA:2.60.120.260 28 157 7.8E-40 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_26750 639dea2d66a7c08e1f2c1c938371cbe2 564 Gene3D G3DSA:2.60.120.260 164 296 6.5E-32 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_35535 bd74a46f0a45bb66f2226f5ae82ad0d5 452 SUPERFAMILY SSF53756 129 371 5.55E-7 T 13-10-2018 RAM_19665 09511becc391c42dfcce5bc4c1e81e02 251 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 249 5.3E-63 T 13-10-2018 RAM_19665 09511becc391c42dfcce5bc4c1e81e02 251 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_19665 09511becc391c42dfcce5bc4c1e81e02 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 1.1E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19665 09511becc391c42dfcce5bc4c1e81e02 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 1.1E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19665 09511becc391c42dfcce5bc4c1e81e02 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 1.1E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19665 09511becc391c42dfcce5bc4c1e81e02 251 Gene3D G3DSA:3.40.50.720 1 251 3.6E-82 T 13-10-2018 RAM_19665 09511becc391c42dfcce5bc4c1e81e02 251 SUPERFAMILY SSF51735 7 250 1.58E-79 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_19665 09511becc391c42dfcce5bc4c1e81e02 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 2.5E-44 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19665 09511becc391c42dfcce5bc4c1e81e02 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 2.5E-44 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19665 09511becc391c42dfcce5bc4c1e81e02 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 2.5E-44 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19665 09511becc391c42dfcce5bc4c1e81e02 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 2.5E-44 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19665 09511becc391c42dfcce5bc4c1e81e02 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 2.5E-44 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19665 09511becc391c42dfcce5bc4c1e81e02 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 2.5E-44 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19665 09511becc391c42dfcce5bc4c1e81e02 251 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 190 0.0062 T 13-10-2018 RAM_31195 26d3d2e381723999b832b11e3bfc34db 657 Gene3D G3DSA:3.40.50.300 202 344 1.9E-10 T 13-10-2018 RAM_31195 26d3d2e381723999b832b11e3bfc34db 657 Gene3D G3DSA:3.40.50.300 362 467 5.3E-11 T 13-10-2018 RAM_31195 26d3d2e381723999b832b11e3bfc34db 657 Pfam PF13245 AAA domain 214 457 3.0E-14 T 13-10-2018 RAM_31195 26d3d2e381723999b832b11e3bfc34db 657 Gene3D G3DSA:3.40.50.300 477 654 1.3E-17 T 13-10-2018 RAM_31195 26d3d2e381723999b832b11e3bfc34db 657 SUPERFAMILY SSF52540 202 642 3.33E-50 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_02160 6473eb63c0a24a61790e53f15d0c2ce1 432 Pfam PF04286 Protein of unknown function (DUF445) 68 430 5.9E-109 T 13-10-2018 IPR007383 Protein of unknown function DUF445 RAM_34240 e7d75c31f49ad852aa6eee34d1081ed1 169 SUPERFAMILY SSF46785 15 156 2.04E-28 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_34240 e7d75c31f49ad852aa6eee34d1081ed1 169 SMART SM00347 39 142 3.0E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_34240 e7d75c31f49ad852aa6eee34d1081ed1 169 Pfam PF12802 MarR family 44 104 3.2E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_34240 e7d75c31f49ad852aa6eee34d1081ed1 169 Gene3D G3DSA:1.10.10.10 13 160 1.5E-35 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_37060 874083b8a401d8374bb0701dabe99e2b 68 Gene3D G3DSA:3.50.50.60 1 68 1.4E-16 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_37060 874083b8a401d8374bb0701dabe99e2b 68 Pfam PF13450 NAD(P)-binding Rossmann-like domain 12 59 4.0E-5 T 13-10-2018 RAM_37060 874083b8a401d8374bb0701dabe99e2b 68 SUPERFAMILY SSF51905 1 66 3.31E-10 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_43000 6421b837aba94e980228ea41423f6dc5 543 SUPERFAMILY SSF53850 24 521 6.62E-90 T 13-10-2018 RAM_43000 6421b837aba94e980228ea41423f6dc5 543 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 74 433 2.7E-62 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain RAM_43000 6421b837aba94e980228ea41423f6dc5 543 PIRSF PIRSF002741 6 503 1.3E-69 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RAM_43000 6421b837aba94e980228ea41423f6dc5 543 Gene3D G3DSA:3.40.190.10 37 525 4.7E-136 T 13-10-2018 RAM_43000 6421b837aba94e980228ea41423f6dc5 543 Gene3D G3DSA:3.90.76.10 59 163 4.7E-136 T 13-10-2018 RAM_43000 6421b837aba94e980228ea41423f6dc5 543 Gene3D G3DSA:3.10.105.10 263 504 4.7E-136 T 13-10-2018 RAM_26135 0bd1df3ae4f970d71ee90176d75e86d4 144 Pfam PF07681 DoxX 14 87 2.0E-8 T 13-10-2018 IPR032808 DoxX family RAM_21335 a6f716210ee780dad433a073797f71e5 525 Pfam PF13298 DNA polymerase Ligase (LigD) 39 144 3.9E-36 T 13-10-2018 IPR014144 DNA ligase D, 3'-phosphoesterase domain RAM_21335 a6f716210ee780dad433a073797f71e5 525 TIGRFAM TIGR02778 ligD_pol: DNA ligase D, polymerase domain 238 487 4.2E-72 T 13-10-2018 IPR014145 DNA ligase D, polymerase domain RAM_21335 a6f716210ee780dad433a073797f71e5 525 Gene3D G3DSA:3.90.920.30 244 524 2.5E-92 T 13-10-2018 RAM_21335 a6f716210ee780dad433a073797f71e5 525 TIGRFAM TIGR02777 LigD_PE_dom: DNA ligase D, 3'-phosphoesterase domain 9 162 1.7E-63 T 13-10-2018 IPR014144 DNA ligase D, 3'-phosphoesterase domain RAM_45545 079fc1f14d003d0328a2cf36f4f293a3 382 Pfam PF07690 Major Facilitator Superfamily 2 245 1.6E-14 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_45545 079fc1f14d003d0328a2cf36f4f293a3 382 SUPERFAMILY SSF103473 1 365 2.35E-31 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_45545 079fc1f14d003d0328a2cf36f4f293a3 382 Gene3D G3DSA:1.20.1250.20 1 361 3.2E-29 T 13-10-2018 RAM_31135 dfd29034bcc4ffdbd13caaff2a9bd209 524 Gene3D G3DSA:3.30.450.20 32 170 9.9E-41 T 13-10-2018 RAM_31135 dfd29034bcc4ffdbd13caaff2a9bd209 524 Pfam PF17203 Single cache domain 3 35 168 3.0E-28 T 13-10-2018 IPR033463 Single cache domain 3 RAM_31135 dfd29034bcc4ffdbd13caaff2a9bd209 524 SMART SM00387 415 521 7.0E-22 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_31135 dfd29034bcc4ffdbd13caaff2a9bd209 524 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 418 519 2.7E-13 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_31135 dfd29034bcc4ffdbd13caaff2a9bd209 524 SUPERFAMILY SSF55785 204 308 2.28E-7 T 13-10-2018 IPR035965 PAS domain superfamily RAM_31135 dfd29034bcc4ffdbd13caaff2a9bd209 524 SUPERFAMILY SSF55874 388 519 1.15E-22 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_31135 dfd29034bcc4ffdbd13caaff2a9bd209 524 Gene3D G3DSA:3.30.450.20 199 310 1.4E-21 T 13-10-2018 RAM_31135 dfd29034bcc4ffdbd13caaff2a9bd209 524 Pfam PF13188 PAS domain 211 257 1.8E-5 T 13-10-2018 IPR000014 PAS domain RAM_31135 dfd29034bcc4ffdbd13caaff2a9bd209 524 SMART SM00091 211 277 0.0017 T 13-10-2018 IPR000014 PAS domain RAM_31135 dfd29034bcc4ffdbd13caaff2a9bd209 524 PRINTS PR00344 Bacterial sensor protein C-terminal signature 483 501 1.4E-7 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_31135 dfd29034bcc4ffdbd13caaff2a9bd209 524 PRINTS PR00344 Bacterial sensor protein C-terminal signature 455 469 1.4E-7 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_31135 dfd29034bcc4ffdbd13caaff2a9bd209 524 SUPERFAMILY SSF103190 38 167 3.14E-31 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily RAM_31135 dfd29034bcc4ffdbd13caaff2a9bd209 524 SUPERFAMILY SSF55890 325 387 8.37E-5 T 13-10-2018 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB GO:0000155|GO:0000160|GO:0016772 RAM_31135 dfd29034bcc4ffdbd13caaff2a9bd209 524 Gene3D G3DSA:3.30.565.10 378 523 2.9E-23 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_18030 4632a359e55d4b1c824dcc9545469bab 329 Gene3D G3DSA:3.90.180.10 8 325 4.6E-75 T 13-10-2018 RAM_18030 4632a359e55d4b1c824dcc9545469bab 329 Gene3D G3DSA:3.40.50.720 126 297 4.6E-75 T 13-10-2018 RAM_18030 4632a359e55d4b1c824dcc9545469bab 329 SUPERFAMILY SSF50129 1 148 7.3E-31 T 13-10-2018 IPR011032 GroES-like superfamily RAM_18030 4632a359e55d4b1c824dcc9545469bab 329 SMART SM00829 10 327 5.5E-13 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_18030 4632a359e55d4b1c824dcc9545469bab 329 Pfam PF00107 Zinc-binding dehydrogenase 159 287 2.1E-19 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RAM_18030 4632a359e55d4b1c824dcc9545469bab 329 SUPERFAMILY SSF51735 125 291 2.34E-30 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_07645 08f8d169984d8fc4a1e8f2cf341c9be5 518 SUPERFAMILY SSF53474 82 454 1.71E-19 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_07645 08f8d169984d8fc4a1e8f2cf341c9be5 518 Pfam PF08386 TAP-like protein 384 477 7.2E-19 T 13-10-2018 IPR013595 Peptidase S33 tripeptidyl aminopeptidase-like, C-terminal RAM_07645 08f8d169984d8fc4a1e8f2cf341c9be5 518 Pfam PF00561 alpha/beta hydrolase fold 82 279 1.0E-23 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_18390 0fa2e541356d2fe7bcc66cf4bfa9075f 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 166 185 4.3E-6 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18390 0fa2e541356d2fe7bcc66cf4bfa9075f 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 232 252 4.3E-6 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18390 0fa2e541356d2fe7bcc66cf4bfa9075f 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 89 100 4.3E-6 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18390 0fa2e541356d2fe7bcc66cf4bfa9075f 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 15 32 4.3E-6 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18390 0fa2e541356d2fe7bcc66cf4bfa9075f 271 Gene3D G3DSA:3.40.50.720 2 270 2.4E-43 T 13-10-2018 RAM_18390 0fa2e541356d2fe7bcc66cf4bfa9075f 271 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 20 268 2.4E-28 T 13-10-2018 RAM_18390 0fa2e541356d2fe7bcc66cf4bfa9075f 271 SUPERFAMILY SSF51735 12 269 3.46E-43 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_43785 37ba3f8c60b6f797c533fe7df7e4b25e 153 SMART SM00960 24 114 3.2E-30 T 13-10-2018 IPR004942 Roadblock/LAMTOR2 domain RAM_43785 37ba3f8c60b6f797c533fe7df7e4b25e 153 SUPERFAMILY SSF103196 19 142 6.8E-34 T 13-10-2018 RAM_43785 37ba3f8c60b6f797c533fe7df7e4b25e 153 Gene3D G3DSA:3.30.450.30 21 145 3.3E-42 T 13-10-2018 RAM_43785 37ba3f8c60b6f797c533fe7df7e4b25e 153 Pfam PF03259 Roadblock/LC7 domain 24 113 8.8E-26 T 13-10-2018 IPR004942 Roadblock/LAMTOR2 domain RAM_04795 6459ad6f76be683cd4634c73ce8b0476 208 Gene3D G3DSA:1.10.10.10 3 99 3.3E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_04795 6459ad6f76be683cd4634c73ce8b0476 208 Pfam PF03551 Transcriptional regulator PadR-like family 13 88 4.6E-12 T 13-10-2018 IPR005149 Transcription regulator PadR, N-terminal RAM_04795 6459ad6f76be683cd4634c73ce8b0476 208 SUPERFAMILY SSF46785 9 181 1.54E-27 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_29190 3171763ec967cea2d2e713255e2cdcdf 489 Pfam PF00999 Sodium/hydrogen exchanger family 14 389 3.0E-54 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 RAM_29190 3171763ec967cea2d2e713255e2cdcdf 489 Pfam PF02080 TrkA-C domain 419 476 1.5E-9 T 13-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RAM_29190 3171763ec967cea2d2e713255e2cdcdf 489 Gene3D G3DSA:1.20.1530.20 9 396 1.6E-21 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily RAM_29190 3171763ec967cea2d2e713255e2cdcdf 489 SUPERFAMILY SSF116726 418 479 4.84E-9 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RAM_29190 3171763ec967cea2d2e713255e2cdcdf 489 Gene3D G3DSA:3.30.70.1450 409 480 4.5E-10 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RAM_42610 2751288b83506cff9f078c5315edb9f6 119 Gene3D G3DSA:1.10.10.60 14 62 1.3E-6 T 13-10-2018 RAM_37165 6a7a31117e3ea17bff2307ddb62a103b 203 Gene3D G3DSA:3.30.300.30 43 170 6.0E-5 T 13-10-2018 RAM_37165 6a7a31117e3ea17bff2307ddb62a103b 203 Gene3D G3DSA:3.40.50.12780 1 42 2.2E-14 T 13-10-2018 RAM_37165 6a7a31117e3ea17bff2307ddb62a103b 203 Pfam PF00501 AMP-binding enzyme 1 47 1.6E-14 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_37165 6a7a31117e3ea17bff2307ddb62a103b 203 SUPERFAMILY SSF56801 1 177 1.2E-31 T 13-10-2018 RAM_07190 800950494faadbe74d9b9f80c69ffbe2 1521 Pfam PF14410 HNH/ENDO VII superfamily nuclease with conserved GHE residues 1449 1501 8.9E-11 T 13-10-2018 IPR026835 UPF0720 protein yqcG RAM_07190 800950494faadbe74d9b9f80c69ffbe2 1521 Gene3D G3DSA:1.20.1260.20 82 251 7.4E-6 T 13-10-2018 IPR038332 PPE superfamily RAM_07190 800950494faadbe74d9b9f80c69ffbe2 1521 PRINTS PR00394 RHS protein signature 1308 1328 7.2E-10 T 13-10-2018 IPR001826 RHS protein RAM_07190 800950494faadbe74d9b9f80c69ffbe2 1521 PRINTS PR00394 RHS protein signature 1331 1350 7.2E-10 T 13-10-2018 IPR001826 RHS protein RAM_07190 800950494faadbe74d9b9f80c69ffbe2 1521 SUPERFAMILY SSF101898 616 771 3.14E-5 T 13-10-2018 RAM_07190 800950494faadbe74d9b9f80c69ffbe2 1521 SUPERFAMILY SSF140459 88 216 6.8E-6 T 13-10-2018 RAM_07190 800950494faadbe74d9b9f80c69ffbe2 1521 Pfam PF05593 RHS Repeat 589 625 2.0E-7 T 13-10-2018 IPR031325 RHS repeat RAM_07190 800950494faadbe74d9b9f80c69ffbe2 1521 Pfam PF05593 RHS Repeat 631 667 1.5E-4 T 13-10-2018 IPR031325 RHS repeat RAM_07190 800950494faadbe74d9b9f80c69ffbe2 1521 Pfam PF05593 RHS Repeat 1161 1191 5.8E-7 T 13-10-2018 IPR031325 RHS repeat RAM_07190 800950494faadbe74d9b9f80c69ffbe2 1521 Pfam PF05593 RHS Repeat 847 878 4.5E-6 T 13-10-2018 IPR031325 RHS repeat RAM_07190 800950494faadbe74d9b9f80c69ffbe2 1521 Pfam PF05593 RHS Repeat 717 753 1.3E-5 T 13-10-2018 IPR031325 RHS repeat RAM_07190 800950494faadbe74d9b9f80c69ffbe2 1521 Pfam PF05593 RHS Repeat 738 774 1.9E-7 T 13-10-2018 IPR031325 RHS repeat RAM_07190 800950494faadbe74d9b9f80c69ffbe2 1521 Pfam PF05593 RHS Repeat 681 710 2.6E-5 T 13-10-2018 IPR031325 RHS repeat RAM_07190 800950494faadbe74d9b9f80c69ffbe2 1521 Gene3D G3DSA:2.180.10.10 603 714 1.2E-6 T 13-10-2018 RAM_07190 800950494faadbe74d9b9f80c69ffbe2 1521 Gene3D G3DSA:2.180.10.10 886 1363 3.6E-42 T 13-10-2018 RAM_07190 800950494faadbe74d9b9f80c69ffbe2 1521 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 717 756 3.4E-7 T 13-10-2018 IPR006530 YD repeat RAM_07190 800950494faadbe74d9b9f80c69ffbe2 1521 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 680 709 1.4E-4 T 13-10-2018 IPR006530 YD repeat RAM_07190 800950494faadbe74d9b9f80c69ffbe2 1521 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 738 777 1.4E-8 T 13-10-2018 IPR006530 YD repeat RAM_07190 800950494faadbe74d9b9f80c69ffbe2 1521 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1161 1191 3.0E-9 T 13-10-2018 IPR006530 YD repeat RAM_07190 800950494faadbe74d9b9f80c69ffbe2 1521 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 589 627 2.0E-4 T 13-10-2018 IPR006530 YD repeat RAM_07190 800950494faadbe74d9b9f80c69ffbe2 1521 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 842 880 4.7E-8 T 13-10-2018 IPR006530 YD repeat RAM_07190 800950494faadbe74d9b9f80c69ffbe2 1521 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1078 1102 0.0033 T 13-10-2018 IPR006530 YD repeat RAM_07190 800950494faadbe74d9b9f80c69ffbe2 1521 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 525 560 1.0E-5 T 13-10-2018 IPR006530 YD repeat RAM_07190 800950494faadbe74d9b9f80c69ffbe2 1521 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 632 666 0.0012 T 13-10-2018 IPR006530 YD repeat RAM_07190 800950494faadbe74d9b9f80c69ffbe2 1521 Gene3D G3DSA:3.90.930.1 744 885 2.2E-7 T 13-10-2018 RAM_07190 800950494faadbe74d9b9f80c69ffbe2 1521 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 1289 1363 2.1E-23 T 13-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 RAM_20150 3067108563ea960c9e686260c6cd0233 422 Gene3D G3DSA:3.40.190.10 147 415 2.6E-61 T 13-10-2018 RAM_20150 3067108563ea960c9e686260c6cd0233 422 Gene3D G3DSA:3.40.190.10 54 381 2.6E-61 T 13-10-2018 RAM_20150 3067108563ea960c9e686260c6cd0233 422 Pfam PF13416 Bacterial extracellular solute-binding protein 58 359 3.9E-31 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein RAM_20150 3067108563ea960c9e686260c6cd0233 422 SUPERFAMILY SSF53850 19 418 1.89E-57 T 13-10-2018 RAM_18265 5df93aa0d1927588dcd5d859a70587ff 401 SUPERFAMILY SSF51905 1 367 8.65E-46 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_18265 5df93aa0d1927588dcd5d859a70587ff 401 Pfam PF01494 FAD binding domain 7 330 1.5E-15 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_18265 5df93aa0d1927588dcd5d859a70587ff 401 Gene3D G3DSA:3.50.50.60 2 371 5.8E-104 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_18265 5df93aa0d1927588dcd5d859a70587ff 401 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 150 165 7.6E-20 T 13-10-2018 RAM_18265 5df93aa0d1927588dcd5d859a70587ff 401 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 293 308 7.6E-20 T 13-10-2018 RAM_18265 5df93aa0d1927588dcd5d859a70587ff 401 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 308 324 7.6E-20 T 13-10-2018 RAM_18265 5df93aa0d1927588dcd5d859a70587ff 401 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 7.6E-20 T 13-10-2018 RAM_12715 85852a08a2a07d5b21a5f8680860221c 208 Pfam PF00440 Bacterial regulatory proteins, tetR family 34 77 1.0E-14 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_12715 85852a08a2a07d5b21a5f8680860221c 208 SUPERFAMILY SSF46689 28 93 2.49E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_12715 85852a08a2a07d5b21a5f8680860221c 208 Gene3D G3DSA:1.10.357.10 15 208 6.9E-68 T 13-10-2018 RAM_12715 85852a08a2a07d5b21a5f8680860221c 208 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 47 2.6E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_12715 85852a08a2a07d5b21a5f8680860221c 208 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 55 78 2.6E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_26095 fb90413c8eeba543c4aebc63139521f1 289 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 63 7.2E-19 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_26095 fb90413c8eeba543c4aebc63139521f1 289 Gene3D G3DSA:1.10.10.10 5 89 3.7E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_26095 fb90413c8eeba543c4aebc63139521f1 289 SUPERFAMILY SSF46785 7 102 1.44E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_27905 16699adb07bee06a07ad89647420a085 464 PIRSF PIRSF006446 1 461 2.7E-156 T 13-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 RAM_27905 16699adb07bee06a07ad89647420a085 464 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 6 444 1.5E-179 T 13-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 RAM_14555 c81da40fd7294b978d5d06f9caf6d7b6 460 Pfam PF09594 Glycosyltransferase family 87 169 417 1.7E-7 T 13-10-2018 IPR018584 Glycosyltransferase family 87 GO:0016758 RAM_27280 0979cc37f11ea11d4d1346411bf50450 313 SUPERFAMILY SSF56529 55 310 3.92E-55 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 RAM_27280 0979cc37f11ea11d4d1346411bf50450 313 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 67 309 2.4E-53 T 13-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 RAM_38655 07c1827252188b2d57550273f91f7939 173 Gene3D G3DSA:3.40.630.30 1 173 4.7E-38 T 13-10-2018 RAM_38655 07c1827252188b2d57550273f91f7939 173 SUPERFAMILY SSF55729 1 158 5.78E-36 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_38655 07c1827252188b2d57550273f91f7939 173 Pfam PF13302 Acetyltransferase (GNAT) domain 5 148 3.8E-27 T 13-10-2018 IPR000182 GNAT domain RAM_30360 3286a2f478e75a455772ad635d0858d4 145 Pfam PF03734 L,D-transpeptidase catalytic domain 40 143 5.6E-13 T 13-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 RAM_30360 3286a2f478e75a455772ad635d0858d4 145 Gene3D G3DSA:2.40.440.10 36 145 2.5E-19 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like RAM_30360 3286a2f478e75a455772ad635d0858d4 145 SUPERFAMILY SSF141523 38 143 5.36E-20 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like RAM_39715 1f7aa8be57db47134056c8b091962bba 273 SUPERFAMILY SSF56112 24 255 5.69E-25 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_39715 1f7aa8be57db47134056c8b091962bba 273 Gene3D G3DSA:1.10.510.10 101 240 4.4E-9 T 13-10-2018 RAM_39715 1f7aa8be57db47134056c8b091962bba 273 Pfam PF01636 Phosphotransferase enzyme family 52 240 2.7E-13 T 13-10-2018 IPR002575 Aminoglycoside phosphotransferase RAM_33775 8f1254256fa48179a5c8daa14e6a41f3 259 Pfam PF12730 ABC-2 family transporter protein 6 196 2.8E-19 T 13-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 RAM_18585 ef60ff20fe1a741c5786d27092a917d0 190 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 56 4.5E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_18585 ef60ff20fe1a741c5786d27092a917d0 190 SUPERFAMILY SSF46689 4 71 1.9E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_18585 ef60ff20fe1a741c5786d27092a917d0 190 SUPERFAMILY SSF48498 75 183 6.43E-16 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_18585 ef60ff20fe1a741c5786d27092a917d0 190 Gene3D G3DSA:1.10.357.10 2 185 4.1E-41 T 13-10-2018 RAM_22615 dfc98ce5d427c3875ed759108e93c605 120 Pfam PF13466 STAS domain 25 101 1.1E-11 T 13-10-2018 IPR002645 STAS domain RAM_22615 dfc98ce5d427c3875ed759108e93c605 120 SUPERFAMILY SSF52091 17 109 3.73E-12 T 13-10-2018 IPR036513 STAS domain superfamily RAM_22615 dfc98ce5d427c3875ed759108e93c605 120 Gene3D G3DSA:3.30.750.24 7 114 8.1E-21 T 13-10-2018 IPR036513 STAS domain superfamily RAM_33485 000b4566663e73d705bb824e6befa1d0 68 PRINTS PR00944 Copper ion binding protein signature 15 28 3.1E-7 T 13-10-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 RAM_33485 000b4566663e73d705bb824e6befa1d0 68 PRINTS PR00944 Copper ion binding protein signature 3 15 3.1E-7 T 13-10-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 RAM_33485 000b4566663e73d705bb824e6befa1d0 68 PRINTS PR00944 Copper ion binding protein signature 53 66 3.1E-7 T 13-10-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 RAM_33485 000b4566663e73d705bb824e6befa1d0 68 PRINTS PR00944 Copper ion binding protein signature 28 41 3.1E-7 T 13-10-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 RAM_33485 000b4566663e73d705bb824e6befa1d0 68 Pfam PF00403 Heavy-metal-associated domain 5 65 2.4E-15 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 RAM_33485 000b4566663e73d705bb824e6befa1d0 68 SUPERFAMILY SSF55008 1 66 1.44E-17 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 RAM_33485 000b4566663e73d705bb824e6befa1d0 68 Gene3D G3DSA:3.30.70.100 3 65 1.2E-18 T 13-10-2018 RAM_33485 000b4566663e73d705bb824e6befa1d0 68 ProSitePatterns PS01047 Heavy-metal-associated domain. 8 37 - T 13-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 RAM_09520 0e0aad89c5722bfe1f2fe6751db72e52 349 Pfam PF00248 Aldo/keto reductase family 16 318 2.5E-74 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain RAM_09520 0e0aad89c5722bfe1f2fe6751db72e52 349 SUPERFAMILY SSF51430 1 322 4.06E-100 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_09520 0e0aad89c5722bfe1f2fe6751db72e52 349 PRINTS PR00069 Aldo-keto reductase signature 144 161 1.0E-6 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_09520 0e0aad89c5722bfe1f2fe6751db72e52 349 PRINTS PR00069 Aldo-keto reductase signature 47 71 1.0E-6 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_09520 0e0aad89c5722bfe1f2fe6751db72e52 349 PRINTS PR00069 Aldo-keto reductase signature 113 131 1.0E-6 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_09520 0e0aad89c5722bfe1f2fe6751db72e52 349 Gene3D G3DSA:3.20.20.100 1 339 2.1E-117 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_39765 cc30bd036bab0a2004346febecf7fe09 174 SUPERFAMILY SSF52540 5 103 8.38E-16 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_39765 cc30bd036bab0a2004346febecf7fe09 174 Pfam PF13238 AAA domain 8 71 4.8E-7 T 13-10-2018 RAM_39765 cc30bd036bab0a2004346febecf7fe09 174 Gene3D G3DSA:3.40.50.300 2 138 1.6E-10 T 13-10-2018 RAM_26130 6cab668a5aa61c335c9ae8375fc463a1 229 Pfam PF00440 Bacterial regulatory proteins, tetR family 24 69 3.4E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_26130 6cab668a5aa61c335c9ae8375fc463a1 229 Gene3D G3DSA:1.10.357.10 4 229 5.2E-68 T 13-10-2018 RAM_26130 6cab668a5aa61c335c9ae8375fc463a1 229 SUPERFAMILY SSF48498 83 220 1.67E-25 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_26130 6cab668a5aa61c335c9ae8375fc463a1 229 SUPERFAMILY SSF46689 16 76 3.85E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_26130 6cab668a5aa61c335c9ae8375fc463a1 229 Pfam PF02909 Tetracyclin repressor, C-terminal all-alpha domain 79 190 3.2E-14 T 13-10-2018 IPR004111 Tetracycline transcriptional regulator, TetR, C-terminal GO:0045892 RAM_17245 2cbf562f83dd953cc5e761c957fbd712 246 Gene3D G3DSA:1.10.10.10 104 178 6.8E-9 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_17245 2cbf562f83dd953cc5e761c957fbd712 246 Gene3D G3DSA:1.10.1740.10 4 94 4.3E-10 T 13-10-2018 RAM_17245 2cbf562f83dd953cc5e761c957fbd712 246 Pfam PF13490 Putative zinc-finger 190 224 3.1E-9 T 13-10-2018 IPR027383 Putative zinc-finger RAM_17245 2cbf562f83dd953cc5e761c957fbd712 246 Pfam PF04542 Sigma-70 region 2 27 95 8.1E-7 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_17245 2cbf562f83dd953cc5e761c957fbd712 246 SUPERFAMILY SSF88946 1 99 6.28E-14 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_17245 2cbf562f83dd953cc5e761c957fbd712 246 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 22 176 8.8E-14 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_17245 2cbf562f83dd953cc5e761c957fbd712 246 SUPERFAMILY SSF88659 95 177 1.03E-8 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_39485 17f1b97423a4fc88bf636e7e48a00f2c 445 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 265 433 1.3E-45 T 13-10-2018 IPR000160 GGDEF domain RAM_39485 17f1b97423a4fc88bf636e7e48a00f2c 445 SMART SM00267 257 435 1.1E-57 T 13-10-2018 IPR000160 GGDEF domain RAM_39485 17f1b97423a4fc88bf636e7e48a00f2c 445 Pfam PF00990 Diguanylate cyclase, GGDEF domain 270 431 1.2E-43 T 13-10-2018 IPR000160 GGDEF domain RAM_39485 17f1b97423a4fc88bf636e7e48a00f2c 445 SUPERFAMILY SSF55073 274 435 9.42E-47 T 13-10-2018 IPR029787 Nucleotide cyclase RAM_39485 17f1b97423a4fc88bf636e7e48a00f2c 445 Gene3D G3DSA:3.30.70.270 261 438 1.2E-54 T 13-10-2018 RAM_30615 508090d9a6570888f862f969517bdebc 482 Gene3D G3DSA:3.50.50.60 152 225 8.9E-13 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_30615 508090d9a6570888f862f969517bdebc 482 Gene3D G3DSA:3.50.50.60 311 422 2.3E-7 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_30615 508090d9a6570888f862f969517bdebc 482 Pfam PF00743 Flavin-binding monooxygenase-like 8 213 2.1E-11 T 13-10-2018 IPR020946 Flavin monooxygenase-like GO:0004499|GO:0050660|GO:0050661|GO:0055114 RAM_30615 508090d9a6570888f862f969517bdebc 482 SUPERFAMILY SSF51905 6 403 1.3E-54 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_30615 508090d9a6570888f862f969517bdebc 482 Gene3D G3DSA:3.50.50.60 1 151 2.8E-43 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_30615 508090d9a6570888f862f969517bdebc 482 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 174 199 2.1E-5 T 13-10-2018 RAM_30615 508090d9a6570888f862f969517bdebc 482 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 2.1E-5 T 13-10-2018 RAM_16840 02119bc19581e26b41dfbe086be4feea 254 Pfam PF03707 Bacterial signalling protein N terminal repeat 119 177 1.2E-16 T 13-10-2018 IPR005330 MHYT domain RAM_16840 02119bc19581e26b41dfbe086be4feea 254 Pfam PF03707 Bacterial signalling protein N terminal repeat 54 112 6.8E-15 T 13-10-2018 IPR005330 MHYT domain RAM_16840 02119bc19581e26b41dfbe086be4feea 254 Pfam PF03707 Bacterial signalling protein N terminal repeat 181 227 4.6E-5 T 13-10-2018 IPR005330 MHYT domain RAM_09810 df76d9e18ce1e194b336f7393fb220c3 428 Gene3D G3DSA:3.40.640.10 7 287 1.7E-99 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_09810 df76d9e18ce1e194b336f7393fb220c3 428 SUPERFAMILY SSF53383 6 422 7.58E-124 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_09810 df76d9e18ce1e194b336f7393fb220c3 428 PIRSF PIRSF001434 1 426 3.2E-125 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 RAM_09810 df76d9e18ce1e194b336f7393fb220c3 428 Gene3D G3DSA:3.90.1150.10 291 427 1.2E-50 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_09810 df76d9e18ce1e194b336f7393fb220c3 428 TIGRFAM TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase 8 422 6.8E-179 T 13-10-2018 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 RAM_09810 df76d9e18ce1e194b336f7393fb220c3 428 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 10 422 1.7E-130 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 RAM_09810 df76d9e18ce1e194b336f7393fb220c3 428 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 200 214 - T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 RAM_02780 169d34f99f5303885c9f7190c5409ac7 254 Gene3D G3DSA:3.90.226.10 2 251 5.6E-59 T 13-10-2018 RAM_02780 169d34f99f5303885c9f7190c5409ac7 254 Pfam PF00378 Enoyl-CoA hydratase/isomerase 9 227 1.4E-45 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RAM_02780 169d34f99f5303885c9f7190c5409ac7 254 SUPERFAMILY SSF52096 2 244 2.77E-60 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_25365 9d7cc192123d64d2a940f06732cf5485 300 SUPERFAMILY SSF51735 1 295 3.21E-84 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_25365 9d7cc192123d64d2a940f06732cf5485 300 Pfam PF01370 NAD dependent epimerase/dehydratase family 1 222 2.1E-53 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 RAM_25365 9d7cc192123d64d2a940f06732cf5485 300 Gene3D G3DSA:3.40.50.720 1 296 1.5E-80 T 13-10-2018 RAM_45215 ec6b7d11b82a2a32b9050cd0139be94d 309 Hamap MF_00068 N-acetylmuramic acid 6-phosphate etherase [murQ]. 9 301 35.261 T 13-10-2018 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00520+4.2.1.126 RAM_45215 ec6b7d11b82a2a32b9050cd0139be94d 309 Pfam PF13580 SIS domain 54 167 5.3E-8 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 RAM_45215 ec6b7d11b82a2a32b9050cd0139be94d 309 SUPERFAMILY SSF53697 15 254 3.24E-60 T 13-10-2018 RAM_45215 ec6b7d11b82a2a32b9050cd0139be94d 309 SUPERFAMILY SSF46934 243 277 3.67E-5 T 13-10-2018 IPR009060 UBA-like superfamily GO:0005515 RAM_45215 ec6b7d11b82a2a32b9050cd0139be94d 309 ProSitePatterns PS01272 Glucokinase regulatory protein family signature. 191 208 - T 13-10-2018 IPR005486 Glucokinase regulatory protein, conserved site KEGG: 00520+4.2.1.126|Reactome: R-HSA-170822|Reactome: R-HSA-5619107 RAM_45215 ec6b7d11b82a2a32b9050cd0139be94d 309 Gene3D G3DSA:1.10.8.1080 225 303 2.9E-22 T 13-10-2018 RAM_45215 ec6b7d11b82a2a32b9050cd0139be94d 309 Gene3D G3DSA:3.40.50.10490 11 224 3.9E-68 T 13-10-2018 RAM_18120 2c283d8c3089a3c8644ee8d99eb5d927 201 Gene3D G3DSA:1.10.357.10 69 200 6.0E-21 T 13-10-2018 RAM_18120 2c283d8c3089a3c8644ee8d99eb5d927 201 Pfam PF16925 Bacterial transcriptional repressor C-terminal 107 178 5.6E-8 T 13-10-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RAM_18120 2c283d8c3089a3c8644ee8d99eb5d927 201 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 61 6.0E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_18120 2c283d8c3089a3c8644ee8d99eb5d927 201 SUPERFAMILY SSF48498 85 197 5.44E-22 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_18120 2c283d8c3089a3c8644ee8d99eb5d927 201 SUPERFAMILY SSF46689 3 76 6.67E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_18120 2c283d8c3089a3c8644ee8d99eb5d927 201 Gene3D G3DSA:1.10.10.60 1 68 1.4E-20 T 13-10-2018 RAM_14995 4f631626b51d4d1bfc9ab1e6f076ed95 255 Pfam PF06966 Protein of unknown function (DUF1295) 21 241 3.3E-69 T 13-10-2018 IPR010721 Protein of unknown function DUF1295 RAM_14995 4f631626b51d4d1bfc9ab1e6f076ed95 255 Gene3D G3DSA:1.20.120.1630 58 247 3.2E-10 T 13-10-2018 RAM_15925 8f98f058b1e3c542f526d0ce4fddfa6a 203 SUPERFAMILY SSF56801 17 139 2.49E-33 T 13-10-2018 RAM_15925 8f98f058b1e3c542f526d0ce4fddfa6a 203 Gene3D G3DSA:3.40.50.12780 4 201 4.1E-36 T 13-10-2018 RAM_15925 8f98f058b1e3c542f526d0ce4fddfa6a 203 Pfam PF00501 AMP-binding enzyme 32 161 1.8E-27 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_12505 2c49c3373e120f746d2b934ee5894b59 360 PIRSF PIRSF001361 3 360 1.9E-153 T 13-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 RAM_12505 2c49c3373e120f746d2b934ee5894b59 360 Pfam PF00793 DAHP synthetase I family 50 346 1.8E-91 T 13-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 RAM_12505 2c49c3373e120f746d2b934ee5894b59 360 Gene3D G3DSA:3.20.20.70 12 360 3.3E-144 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_12505 2c49c3373e120f746d2b934ee5894b59 360 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 14 360 1.3E-145 T 13-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 RAM_12505 2c49c3373e120f746d2b934ee5894b59 360 SUPERFAMILY SSF51569 17 360 2.34E-127 T 13-10-2018 RAM_12300 53ce29c01c155d3e2bdc42b9dbab43c7 389 PRINTS PR01270 Histone deacetylase superfamily signature 157 172 4.4E-18 T 13-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 RAM_12300 53ce29c01c155d3e2bdc42b9dbab43c7 389 PRINTS PR01270 Histone deacetylase superfamily signature 243 253 4.4E-18 T 13-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 RAM_12300 53ce29c01c155d3e2bdc42b9dbab43c7 389 PRINTS PR01270 Histone deacetylase superfamily signature 124 147 4.4E-18 T 13-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 RAM_12300 53ce29c01c155d3e2bdc42b9dbab43c7 389 SUPERFAMILY SSF52768 2 333 1.06E-105 T 13-10-2018 IPR023696 Ureohydrolase domain superfamily RAM_12300 53ce29c01c155d3e2bdc42b9dbab43c7 389 PRINTS PR01272 Acetoin utilisation ACUC protein signature 101 114 2.1E-8 T 13-10-2018 IPR003085 Acetoin utilization protein AcuC GO:0045149 RAM_12300 53ce29c01c155d3e2bdc42b9dbab43c7 389 PRINTS PR01272 Acetoin utilisation ACUC protein signature 14 34 2.1E-8 T 13-10-2018 IPR003085 Acetoin utilization protein AcuC GO:0045149 RAM_12300 53ce29c01c155d3e2bdc42b9dbab43c7 389 PRINTS PR01272 Acetoin utilisation ACUC protein signature 80 94 2.1E-8 T 13-10-2018 IPR003085 Acetoin utilization protein AcuC GO:0045149 RAM_12300 53ce29c01c155d3e2bdc42b9dbab43c7 389 Pfam PF00850 Histone deacetylase domain 20 313 8.5E-76 T 13-10-2018 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 RAM_12300 53ce29c01c155d3e2bdc42b9dbab43c7 389 Gene3D G3DSA:3.40.800.20 3 351 3.9E-104 T 13-10-2018 IPR037138 Histone deacetylase domain superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 RAM_38375 b5b7b7243db3854c10dda09a71cfa7b1 125 Pfam PF05331 Protein of unknown function (DUF742) 13 125 1.3E-29 T 13-10-2018 IPR007995 Protein of unknown function DUF742 RAM_30890 48fee023942cd6882274988cf23a9cbc 330 SMART SM00829 10 320 6.6E-11 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_30890 48fee023942cd6882274988cf23a9cbc 330 Pfam PF13602 Zinc-binding dehydrogenase 187 320 3.3E-15 T 13-10-2018 RAM_30890 48fee023942cd6882274988cf23a9cbc 330 Gene3D G3DSA:3.90.180.10 10 319 5.1E-67 T 13-10-2018 RAM_30890 48fee023942cd6882274988cf23a9cbc 330 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 27 84 1.4E-4 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_30890 48fee023942cd6882274988cf23a9cbc 330 SUPERFAMILY SSF51735 115 255 1.72E-28 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_30890 48fee023942cd6882274988cf23a9cbc 330 SUPERFAMILY SSF50129 1 147 1.49E-31 T 13-10-2018 IPR011032 GroES-like superfamily RAM_30890 48fee023942cd6882274988cf23a9cbc 330 Gene3D G3DSA:3.40.50.720 126 265 5.1E-67 T 13-10-2018 RAM_14345 143ad54ab813b5242e8afa4963dd1b5f 305 Pfam PF00487 Fatty acid desaturase 47 266 8.5E-21 T 13-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 RAM_14345 143ad54ab813b5242e8afa4963dd1b5f 305 PRINTS PR00075 Fatty acid desaturase family 1 signature 207 228 2.3E-19 T 13-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 RAM_14345 143ad54ab813b5242e8afa4963dd1b5f 305 PRINTS PR00075 Fatty acid desaturase family 1 signature 250 264 2.3E-19 T 13-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 RAM_14345 143ad54ab813b5242e8afa4963dd1b5f 305 PRINTS PR00075 Fatty acid desaturase family 1 signature 70 90 2.3E-19 T 13-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 RAM_14345 143ad54ab813b5242e8afa4963dd1b5f 305 PRINTS PR00075 Fatty acid desaturase family 1 signature 47 69 2.3E-19 T 13-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 RAM_11910 b006e28b0cc0a62b4bd4bfe9be23f4fd 614 Pfam PF00012 Hsp70 protein 90 351 6.8E-28 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RAM_11910 b006e28b0cc0a62b4bd4bfe9be23f4fd 614 Gene3D G3DSA:3.90.640.10 203 290 1.7E-96 T 13-10-2018 RAM_11910 b006e28b0cc0a62b4bd4bfe9be23f4fd 614 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 312 326 - T 13-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 RAM_11910 b006e28b0cc0a62b4bd4bfe9be23f4fd 614 SUPERFAMILY SSF53067 3 156 2.4E-23 T 13-10-2018 RAM_11910 b006e28b0cc0a62b4bd4bfe9be23f4fd 614 PRINTS PR00301 70kDa heat shock protein signature 2 15 8.4E-8 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RAM_11910 b006e28b0cc0a62b4bd4bfe9be23f4fd 614 PRINTS PR00301 70kDa heat shock protein signature 30 42 8.4E-8 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RAM_11910 b006e28b0cc0a62b4bd4bfe9be23f4fd 614 PRINTS PR00301 70kDa heat shock protein signature 177 187 8.4E-8 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RAM_11910 b006e28b0cc0a62b4bd4bfe9be23f4fd 614 PRINTS PR00301 70kDa heat shock protein signature 309 325 8.4E-8 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RAM_11910 b006e28b0cc0a62b4bd4bfe9be23f4fd 614 Gene3D G3DSA:3.30.420.40 5 350 1.7E-96 T 13-10-2018 RAM_11910 b006e28b0cc0a62b4bd4bfe9be23f4fd 614 SUPERFAMILY SSF53067 166 354 2.05E-31 T 13-10-2018 RAM_11910 b006e28b0cc0a62b4bd4bfe9be23f4fd 614 Gene3D G3DSA:3.30.420.40 165 340 1.7E-96 T 13-10-2018 RAM_05410 5f77bffb455db9a9af3312a3c559f2bc 410 Gene3D G3DSA:1.20.1250.20 2 380 2.4E-47 T 13-10-2018 RAM_05410 5f77bffb455db9a9af3312a3c559f2bc 410 SUPERFAMILY SSF103473 5 379 1.31E-50 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_05410 5f77bffb455db9a9af3312a3c559f2bc 410 ProSitePatterns PS00216 Sugar transport proteins signature 1. 61 77 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RAM_05410 5f77bffb455db9a9af3312a3c559f2bc 410 Pfam PF07690 Major Facilitator Superfamily 14 226 5.6E-23 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_27230 992e1753046b5775d5affefcf2b1b986 335 SUPERFAMILY SSF54909 232 311 6.57E-7 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_27230 992e1753046b5775d5affefcf2b1b986 335 Pfam PF13404 AsnC-type helix-turn-helix domain 8 47 3.3E-11 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_27230 992e1753046b5775d5affefcf2b1b986 335 Pfam PF01037 Lrp/AsnC ligand binding domain 244 304 8.8E-7 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RAM_27230 992e1753046b5775d5affefcf2b1b986 335 Pfam PF01037 Lrp/AsnC ligand binding domain 73 140 4.1E-8 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RAM_27230 992e1753046b5775d5affefcf2b1b986 335 SUPERFAMILY SSF46785 8 64 3.81E-5 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_27230 992e1753046b5775d5affefcf2b1b986 335 Gene3D G3DSA:3.30.70.920 65 151 5.3E-11 T 13-10-2018 RAM_27230 992e1753046b5775d5affefcf2b1b986 335 Gene3D G3DSA:3.30.70.920 227 314 3.2E-7 T 13-10-2018 RAM_27230 992e1753046b5775d5affefcf2b1b986 335 SUPERFAMILY SSF54909 70 151 4.16E-10 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_27230 992e1753046b5775d5affefcf2b1b986 335 SMART SM00344 8 113 0.0022 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RAM_27230 992e1753046b5775d5affefcf2b1b986 335 SMART SM00344 179 278 0.003 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RAM_27230 992e1753046b5775d5affefcf2b1b986 335 Gene3D G3DSA:1.10.10.10 7 57 6.8E-9 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_10145 b5ff77d6d40c05cb7ec9b6c310ffad0e 431 Pfam PF01979 Amidohydrolase family 40 402 3.2E-28 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RAM_10145 b5ff77d6d40c05cb7ec9b6c310ffad0e 431 Gene3D G3DSA:3.20.20.140 44 353 2.5E-87 T 13-10-2018 RAM_10145 b5ff77d6d40c05cb7ec9b6c310ffad0e 431 SUPERFAMILY SSF51338 2 425 8.88E-15 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_10145 b5ff77d6d40c05cb7ec9b6c310ffad0e 431 Gene3D G3DSA:2.30.40.10 25 403 2.5E-87 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_10145 b5ff77d6d40c05cb7ec9b6c310ffad0e 431 SUPERFAMILY SSF51556 43 351 9.53E-55 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_03730 f85b7f21917f8d84c3bfd0bf3a944cff 86 SUPERFAMILY SSF47336 6 81 1.05E-11 T 13-10-2018 IPR036736 ACP-like superfamily RAM_03730 f85b7f21917f8d84c3bfd0bf3a944cff 86 Gene3D G3DSA:1.10.1200.10 6 85 2.7E-13 T 13-10-2018 IPR036736 ACP-like superfamily RAM_03730 f85b7f21917f8d84c3bfd0bf3a944cff 86 Pfam PF00550 Phosphopantetheine attachment site 9 74 1.5E-11 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_05525 cb2c4ddca2e80506b3ed58450b31556e 499 PRINTS PR01035 Tetracycline resistance protein signature 154 176 4.7E-7 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RAM_05525 cb2c4ddca2e80506b3ed58450b31556e 499 PRINTS PR01035 Tetracycline resistance protein signature 29 45 4.7E-7 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RAM_05525 cb2c4ddca2e80506b3ed58450b31556e 499 PRINTS PR01035 Tetracycline resistance protein signature 365 388 4.7E-7 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RAM_05525 cb2c4ddca2e80506b3ed58450b31556e 499 SUPERFAMILY SSF103473 16 485 4.05E-63 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_05525 cb2c4ddca2e80506b3ed58450b31556e 499 Gene3D G3DSA:1.20.1720.10 28 218 2.5E-46 T 13-10-2018 RAM_05525 cb2c4ddca2e80506b3ed58450b31556e 499 Pfam PF07690 Major Facilitator Superfamily 33 427 5.2E-50 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_05525 cb2c4ddca2e80506b3ed58450b31556e 499 Gene3D G3DSA:1.20.1250.20 286 488 3.2E-13 T 13-10-2018 RAM_05525 cb2c4ddca2e80506b3ed58450b31556e 499 ProSitePatterns PS00216 Sugar transport proteins signature 1. 82 98 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RAM_05525 cb2c4ddca2e80506b3ed58450b31556e 499 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 29 440 5.7E-69 T 13-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 RAM_43285 dd92a6c654316913fdc2f0f302931fd6 201 Pfam PF05685 Putative restriction endonuclease 23 164 2.0E-19 T 13-10-2018 IPR008538 Domain of unknown function DUF820 RAM_43285 dd92a6c654316913fdc2f0f302931fd6 201 Gene3D G3DSA:3.90.1570.10 14 187 1.0E-18 T 13-10-2018 RAM_43285 dd92a6c654316913fdc2f0f302931fd6 201 SUPERFAMILY SSF52980 17 161 2.73E-18 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 RAM_44025 f85112591ceace5de37b32a86718ef08 66 SUPERFAMILY SSF54285 1 66 4.09E-14 T 13-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp RAM_44025 f85112591ceace5de37b32a86718ef08 66 Pfam PF02597 ThiS family 11 66 1.5E-11 T 13-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 RAM_44025 f85112591ceace5de37b32a86718ef08 66 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 3 66 6.6E-16 T 13-10-2018 IPR010035 ThiS, thiamine-biosynthesis RAM_44025 f85112591ceace5de37b32a86718ef08 66 Gene3D G3DSA:3.10.20.30 1 66 9.1E-19 T 13-10-2018 IPR012675 Beta-grasp domain superfamily RAM_19120 1500dd48c848124e43ff0cc628c4d272 485 Gene3D G3DSA:1.10.606.10 1 485 6.4E-199 T 13-10-2018 IPR016119 Bromoperoxidase/chloroperoxidase C-terminal GO:0004601|GO:0055114 RAM_19120 1500dd48c848124e43ff0cc628c4d272 485 SUPERFAMILY SSF48317 11 484 4.58E-119 T 13-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily RAM_38470 aa16735bf71295cdc4c74991441aff09 433 Pfam PF01547 Bacterial extracellular solute-binding protein 44 326 6.5E-34 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein RAM_38470 aa16735bf71295cdc4c74991441aff09 433 Gene3D G3DSA:3.40.190.10 147 405 5.9E-114 T 13-10-2018 RAM_38470 aa16735bf71295cdc4c74991441aff09 433 SUPERFAMILY SSF53850 39 419 1.4E-65 T 13-10-2018 RAM_38470 aa16735bf71295cdc4c74991441aff09 433 Gene3D G3DSA:3.40.190.10 53 351 5.9E-114 T 13-10-2018 RAM_14125 831522b7f61ba27c5a8cdd5298537f77 285 PIRSF PIRSF005052 1 285 1.5E-111 T 13-10-2018 IPR005337 RapZ-like family GO:0005524 RAM_14125 831522b7f61ba27c5a8cdd5298537f77 285 Pfam PF03668 P-loop ATPase protein family 1 285 2.6E-110 T 13-10-2018 IPR005337 RapZ-like family GO:0005524 RAM_14125 831522b7f61ba27c5a8cdd5298537f77 285 Hamap MF_00636 RNase adapter protein RapZ [rapZ]. 1 284 40.993 T 13-10-2018 IPR005337 RapZ-like family GO:0005524 RAM_14125 831522b7f61ba27c5a8cdd5298537f77 285 Gene3D G3DSA:3.40.50.300 2 166 5.6E-5 T 13-10-2018 RAM_14125 831522b7f61ba27c5a8cdd5298537f77 285 SUPERFAMILY SSF52540 5 155 9.35E-14 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_45595 53be0d71e4afbfdcda652e194ed38f49 323 Gene3D G3DSA:1.10.10.10 1 64 1.3E-9 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_45595 53be0d71e4afbfdcda652e194ed38f49 323 Pfam PF08279 HTH domain 9 58 4.7E-10 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 RAM_45595 53be0d71e4afbfdcda652e194ed38f49 323 SUPERFAMILY SSF46785 3 57 7.03E-10 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_45595 53be0d71e4afbfdcda652e194ed38f49 323 PIRSF PIRSF016838 1 52 0.004 T 13-10-2018 IPR028349 Protein PafC RAM_45595 53be0d71e4afbfdcda652e194ed38f49 323 PIRSF PIRSF016838 67 322 9.6E-16 T 13-10-2018 IPR028349 Protein PafC RAM_45595 53be0d71e4afbfdcda652e194ed38f49 323 Pfam PF13280 WYL domain 140 318 3.7E-39 T 13-10-2018 IPR026881 WYL domain RAM_45595 53be0d71e4afbfdcda652e194ed38f49 323 ProSitePatterns PS00894 DeoR-type HTH domain signature. 5 39 - T 13-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 RAM_34480 d0e17e8b3731458ac9eb3ad143da801a 254 SUPERFAMILY SSF53474 1 250 9.83E-59 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_34480 d0e17e8b3731458ac9eb3ad143da801a 254 Pfam PF12697 Alpha/beta hydrolase family 22 247 7.0E-25 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_34480 d0e17e8b3731458ac9eb3ad143da801a 254 PRINTS PR00111 Alpha/beta hydrolase fold signature 102 115 1.7E-9 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_34480 d0e17e8b3731458ac9eb3ad143da801a 254 PRINTS PR00111 Alpha/beta hydrolase fold signature 45 60 1.7E-9 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_34480 d0e17e8b3731458ac9eb3ad143da801a 254 PRINTS PR00111 Alpha/beta hydrolase fold signature 199 213 1.7E-9 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_34480 d0e17e8b3731458ac9eb3ad143da801a 254 PRINTS PR00111 Alpha/beta hydrolase fold signature 88 101 1.7E-9 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_34480 d0e17e8b3731458ac9eb3ad143da801a 254 Gene3D G3DSA:3.40.50.1820 1 254 2.7E-60 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_10890 632848e23d83e24ba96d42b71969cb07 191 Pfam PF06114 IrrE N-terminal-like domain 75 173 1.2E-20 T 13-10-2018 IPR010359 IrrE N-terminal-like domain RAM_10260 ac8ebad9f7ed59918dc374b08164e823 117 Gene3D G3DSA:3.40.30.10 1 117 5.8E-39 T 13-10-2018 RAM_10260 ac8ebad9f7ed59918dc374b08164e823 117 Pfam PF03960 ArsC family 55 114 5.5E-8 T 13-10-2018 IPR006660 Arsenate reductase-like RAM_10260 ac8ebad9f7ed59918dc374b08164e823 117 SUPERFAMILY SSF52833 1 117 5.6E-28 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RAM_32200 e875189d78e52c79df866a81078c3648 469 SUPERFAMILY SSF75304 21 328 1.83E-32 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RAM_32200 e875189d78e52c79df866a81078c3648 469 Pfam PF01425 Amidase 27 113 2.9E-7 T 13-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RAM_32200 e875189d78e52c79df866a81078c3648 469 Gene3D G3DSA:3.90.1300.10 13 341 3.8E-39 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RAM_32200 e875189d78e52c79df866a81078c3648 469 Gene3D G3DSA:3.10.490.10 342 464 2.3E-30 T 13-10-2018 RAM_38690 ca7acb1d10690da58400eff33f9cee44 355 Pfam PF11271 Protein of unknown function (DUF3068) 5 329 3.8E-83 T 13-10-2018 IPR021424 Porin PorA RAM_39990 e4d1a76cf21ea481c72b13801d3cf69e 657 SUPERFAMILY SSF55486 230 302 7.7E-5 T 13-10-2018 RAM_39990 e4d1a76cf21ea481c72b13801d3cf69e 657 TIGRFAM TIGR03296 M6dom_TIGR03296: M6 family metalloprotease domain 79 387 8.3E-38 T 13-10-2018 IPR008757 Peptidase M6-like, domain GO:0006508|GO:0008233 RAM_03815 7bd090c2d383f3e84d0d7d17582c8f10 159 Gene3D G3DSA:3.40.630.30 2 155 1.0E-37 T 13-10-2018 RAM_03815 7bd090c2d383f3e84d0d7d17582c8f10 159 TIGRFAM TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase 11 147 5.0E-33 T 13-10-2018 IPR006464 N-acetyltransferase RimI/Ard1 GO:0006474|GO:0016407 RAM_03815 7bd090c2d383f3e84d0d7d17582c8f10 159 SUPERFAMILY SSF55729 3 139 5.32E-30 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_03815 7bd090c2d383f3e84d0d7d17582c8f10 159 Pfam PF00583 Acetyltransferase (GNAT) family 25 127 2.6E-17 T 13-10-2018 IPR000182 GNAT domain RAM_02210 ada6278242b55a4b3fb3ee18abf9d24e 335 SUPERFAMILY SSF51735 6 334 7.61E-68 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_02210 ada6278242b55a4b3fb3ee18abf9d24e 335 Gene3D G3DSA:3.30.1780.10 9 330 9.0E-81 T 13-10-2018 IPR023401 Ornithine cyclodeaminase, N-terminal Reactome: R-HSA-71064 RAM_02210 ada6278242b55a4b3fb3ee18abf9d24e 335 PIRSF PIRSF001439 2 335 1.8E-74 T 13-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 RAM_02210 ada6278242b55a4b3fb3ee18abf9d24e 335 Gene3D G3DSA:3.40.50.720 132 308 9.0E-81 T 13-10-2018 RAM_02210 ada6278242b55a4b3fb3ee18abf9d24e 335 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 12 325 1.2E-57 T 13-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 RAM_44650 3f921c54856e9a1735c9e38d260aef0b 316 Gene3D G3DSA:3.40.50.2000 62 307 1.7E-62 T 13-10-2018 RAM_44650 3f921c54856e9a1735c9e38d260aef0b 316 Pfam PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 149 278 5.7E-11 T 13-10-2018 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0016758 Reactome: R-HSA-156588 RAM_44650 3f921c54856e9a1735c9e38d260aef0b 316 Gene3D G3DSA:3.40.50.2000 1 56 1.4E-13 T 13-10-2018 RAM_44650 3f921c54856e9a1735c9e38d260aef0b 316 Gene3D G3DSA:3.40.50.2000 146 298 1.7E-62 T 13-10-2018 RAM_44650 3f921c54856e9a1735c9e38d260aef0b 316 SUPERFAMILY SSF53756 1 310 3.71E-57 T 13-10-2018 RAM_03625 8f70c1d88519b4a18ef5e0a81192343e 238 Pfam PF01416 tRNA pseudouridine synthase 119 219 4.9E-22 T 13-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RAM_03625 8f70c1d88519b4a18ef5e0a81192343e 238 PIRSF PIRSF001430 1 235 1.8E-52 T 13-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 RAM_03625 8f70c1d88519b4a18ef5e0a81192343e 238 Gene3D G3DSA:3.30.70.580 1 80 7.5E-14 T 13-10-2018 RAM_03625 8f70c1d88519b4a18ef5e0a81192343e 238 Gene3D G3DSA:3.30.70.660 81 217 1.2E-34 T 13-10-2018 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0003723|GO:0009982 RAM_03625 8f70c1d88519b4a18ef5e0a81192343e 238 SUPERFAMILY SSF55120 3 224 1.08E-53 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 RAM_33425 e00e60d523307fc674376f016fe45519 312 Gene3D G3DSA:3.40.50.1820 7 311 2.6E-81 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_33425 e00e60d523307fc674376f016fe45519 312 SUPERFAMILY SSF53474 9 300 6.21E-63 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_33425 e00e60d523307fc674376f016fe45519 312 Pfam PF07859 alpha/beta hydrolase fold 83 288 2.2E-62 T 13-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 RAM_03375 a941044c3a2c864ac189aaca6abf5140 413 SUPERFAMILY SSF103473 11 407 1.83E-38 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_03375 a941044c3a2c864ac189aaca6abf5140 413 Gene3D G3DSA:1.20.1250.20 5 408 2.0E-35 T 13-10-2018 RAM_03375 a941044c3a2c864ac189aaca6abf5140 413 Pfam PF07690 Major Facilitator Superfamily 241 402 4.0E-11 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_06930 c1eddf7584eca48387c482b47ad1231f 167 Gene3D G3DSA:1.10.10.10 2 163 1.9E-43 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_06930 c1eddf7584eca48387c482b47ad1231f 167 SMART SM00347 45 148 3.6E-26 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_06930 c1eddf7584eca48387c482b47ad1231f 167 PRINTS PR00598 Bacterial regulatory protein MarR family signature 108 124 4.3E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_06930 c1eddf7584eca48387c482b47ad1231f 167 PRINTS PR00598 Bacterial regulatory protein MarR family signature 138 158 4.3E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_06930 c1eddf7584eca48387c482b47ad1231f 167 PRINTS PR00598 Bacterial regulatory protein MarR family signature 72 88 4.3E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_06930 c1eddf7584eca48387c482b47ad1231f 167 PRINTS PR00598 Bacterial regulatory protein MarR family signature 89 104 4.3E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_06930 c1eddf7584eca48387c482b47ad1231f 167 Pfam PF12802 MarR family 50 112 1.2E-16 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_06930 c1eddf7584eca48387c482b47ad1231f 167 SUPERFAMILY SSF46785 12 163 2.99E-37 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_33600 e80073ab9233bd9c80331e04a09aafee 237 PIRSF PIRSF036625 1 236 1.6E-43 T 13-10-2018 IPR012074 GAF-ANTAR transcription anti-termination regulator, putative RAM_33600 e80073ab9233bd9c80331e04a09aafee 237 SUPERFAMILY SSF55781 28 174 1.22E-22 T 13-10-2018 RAM_33600 e80073ab9233bd9c80331e04a09aafee 237 SMART SM01012 176 231 1.7E-13 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 RAM_33600 e80073ab9233bd9c80331e04a09aafee 237 Pfam PF03861 ANTAR domain 179 231 3.2E-13 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 RAM_33600 e80073ab9233bd9c80331e04a09aafee 237 SMART SM00065 27 174 3.2E-9 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_33600 e80073ab9233bd9c80331e04a09aafee 237 SUPERFAMILY SSF52172 166 231 5.47E-7 T 13-10-2018 IPR011006 CheY-like superfamily RAM_33600 e80073ab9233bd9c80331e04a09aafee 237 Gene3D G3DSA:3.30.450.40 8 179 2.2E-23 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_33600 e80073ab9233bd9c80331e04a09aafee 237 Pfam PF13185 GAF domain 33 164 8.0E-12 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_33600 e80073ab9233bd9c80331e04a09aafee 237 Gene3D G3DSA:1.10.10.10 180 235 1.2E-9 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_34535 1bf4a5abee0a5450ea44c3ed38b77e34 449 Gene3D G3DSA:1.20.1250.20 15 435 1.3E-37 T 13-10-2018 RAM_34535 1bf4a5abee0a5450ea44c3ed38b77e34 449 Pfam PF07690 Major Facilitator Superfamily 33 388 4.0E-31 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_34535 1bf4a5abee0a5450ea44c3ed38b77e34 449 SUPERFAMILY SSF103473 14 436 6.54E-47 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_02925 77701373eb354343adc3dcd6a99004b1 291 Gene3D G3DSA:3.20.20.30 1 289 1.7E-60 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_02925 77701373eb354343adc3dcd6a99004b1 291 TIGRFAM TIGR03560 F420_Rv1855c: probable F420-dependent oxidoreductase, Rv1855c family 9 232 1.7E-86 T 13-10-2018 IPR019952 F420-dependent oxidoreductase-predicted, Rv1855c RAM_02925 77701373eb354343adc3dcd6a99004b1 291 SUPERFAMILY SSF51679 1 286 1.09E-59 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_02925 77701373eb354343adc3dcd6a99004b1 291 Pfam PF00296 Luciferase-like monooxygenase 2 242 8.3E-42 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_42845 fc274c34cc317d20ad697dd69c567feb 352 SUPERFAMILY SSF53756 18 343 3.81E-40 T 13-10-2018 RAM_42845 fc274c34cc317d20ad697dd69c567feb 352 Gene3D G3DSA:3.40.50.2000 36 160 9.9E-6 T 13-10-2018 RAM_42845 fc274c34cc317d20ad697dd69c567feb 352 Pfam PF00534 Glycosyl transferases group 1 165 320 9.2E-19 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 RAM_42845 fc274c34cc317d20ad697dd69c567feb 352 Gene3D G3DSA:3.40.50.2000 161 321 9.5E-29 T 13-10-2018 RAM_19535 bdf62b9a0e4d5254521b656ca86eb98a 382 Gene3D G3DSA:3.40.50.10540 4 322 4.5E-114 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily RAM_19535 bdf62b9a0e4d5254521b656ca86eb98a 382 Gene3D G3DSA:3.30.1540.10 216 304 4.5E-114 T 13-10-2018 RAM_19535 bdf62b9a0e4d5254521b656ca86eb98a 382 SUPERFAMILY SSF89796 1 377 1.11E-115 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily RAM_19535 bdf62b9a0e4d5254521b656ca86eb98a 382 Pfam PF02515 CoA-transferase family III 5 352 3.0E-80 T 13-10-2018 IPR003673 CoA-transferase family III GO:0003824 RAM_17900 f7038cbaee482a7daf83c403b90ea343 76 Pfam PF13490 Putative zinc-finger 3 36 2.7E-11 T 13-10-2018 IPR027383 Putative zinc-finger RAM_17900 f7038cbaee482a7daf83c403b90ea343 76 Gene3D G3DSA:1.10.10.1320 2 75 3.0E-9 T 13-10-2018 RAM_32690 dc5dd07445e09db1edafceeb7e058882 248 Gene3D G3DSA:1.10.1740.10 65 155 6.8E-14 T 13-10-2018 RAM_32690 dc5dd07445e09db1edafceeb7e058882 248 Pfam PF04542 Sigma-70 region 2 85 157 4.6E-12 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_32690 dc5dd07445e09db1edafceeb7e058882 248 Gene3D G3DSA:1.10.10.10 170 246 3.6E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_32690 dc5dd07445e09db1edafceeb7e058882 248 Pfam PF08281 Sigma-70, region 4 187 239 1.4E-10 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_32690 dc5dd07445e09db1edafceeb7e058882 248 SUPERFAMILY SSF88659 171 244 2.8E-15 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_32690 dc5dd07445e09db1edafceeb7e058882 248 SUPERFAMILY SSF88946 69 172 9.1E-18 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_32690 dc5dd07445e09db1edafceeb7e058882 248 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 81 242 5.5E-25 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_37280 6e45e62d94d18c1aacf98b712d13fadb 414 Gene3D G3DSA:3.40.190.10 144 405 2.3E-83 T 13-10-2018 RAM_37280 6e45e62d94d18c1aacf98b712d13fadb 414 SUPERFAMILY SSF53850 37 407 1.28E-76 T 13-10-2018 RAM_37280 6e45e62d94d18c1aacf98b712d13fadb 414 Gene3D G3DSA:3.40.190.10 51 369 2.3E-83 T 13-10-2018 RAM_37280 6e45e62d94d18c1aacf98b712d13fadb 414 Pfam PF13416 Bacterial extracellular solute-binding protein 51 348 2.2E-39 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein RAM_15160 d3f730e39c5c12e6ea178d00054d09c8 166 SUPERFAMILY SSF54637 13 163 6.43E-42 T 13-10-2018 IPR029069 HotDog domain superfamily RAM_15160 d3f730e39c5c12e6ea178d00054d09c8 166 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 47 164 2.2E-24 T 13-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 RAM_15160 d3f730e39c5c12e6ea178d00054d09c8 166 Gene3D G3DSA:3.10.129.10 28 166 1.6E-39 T 13-10-2018 RAM_15160 d3f730e39c5c12e6ea178d00054d09c8 166 Pfam PF03061 Thioesterase superfamily 78 155 2.9E-13 T 13-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 RAM_32650 60b84f8c8d80d2dcd9f5a94535bcf91e 248 Gene3D G3DSA:2.40.400.10 13 244 8.2E-80 T 13-10-2018 IPR023375 Acetoacetate decarboxylase domain superfamily KEGG: 00072+4.1.1.4|KEGG: 00640+4.1.1.4|MetaCyc: PWY-5451|MetaCyc: PWY-6588|MetaCyc: PWY-6876|MetaCyc: PWY-7466 RAM_32650 60b84f8c8d80d2dcd9f5a94535bcf91e 248 SUPERFAMILY SSF160104 4 244 5.1E-76 T 13-10-2018 IPR023375 Acetoacetate decarboxylase domain superfamily KEGG: 00072+4.1.1.4|KEGG: 00640+4.1.1.4|MetaCyc: PWY-5451|MetaCyc: PWY-6588|MetaCyc: PWY-6876|MetaCyc: PWY-7466 RAM_32650 60b84f8c8d80d2dcd9f5a94535bcf91e 248 Pfam PF06314 Acetoacetate decarboxylase (ADC) 12 243 4.3E-70 T 13-10-2018 IPR010451 Acetoacetate decarboxylase GO:0016829 KEGG: 00072+4.1.1.4|KEGG: 00640+4.1.1.4|MetaCyc: PWY-5451|MetaCyc: PWY-6588|MetaCyc: PWY-6876|MetaCyc: PWY-7466 RAM_30795 43ba62b71ded692d6dd0305d3032a72f 272 SUPERFAMILY SSF53335 8 258 1.66E-67 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_30795 43ba62b71ded692d6dd0305d3032a72f 272 Pfam PF04072 Leucine carboxyl methyltransferase 12 183 9.6E-55 T 13-10-2018 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp GO:0008168|GO:0032259 RAM_30795 43ba62b71ded692d6dd0305d3032a72f 272 TIGRFAM TIGR00027 mthyl_TIGR00027: methyltransferase, TIGR00027 family 10 257 4.0E-79 T 13-10-2018 IPR011610 S-adenosyl-L-methionine-dependent methyltransferase, putative GO:0008168 RAM_30795 43ba62b71ded692d6dd0305d3032a72f 272 Gene3D G3DSA:3.40.50.150 3 272 1.3E-84 T 13-10-2018 RAM_01480 be0a7d4b49830a3711f3f61a23e61c25 263 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 1 231 1.9E-30 T 13-10-2018 IPR007404 LexA-binding, inner membrane-associated putative hydrolase RAM_11875 36d8cce8bee97a6bcc005ae13a09527e 243 Gene3D G3DSA:3.10.180.10 1 127 1.6E-29 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_11875 36d8cce8bee97a6bcc005ae13a09527e 243 Gene3D G3DSA:3.10.180.10 128 243 2.9E-25 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_11875 36d8cce8bee97a6bcc005ae13a09527e 243 SUPERFAMILY SSF54593 134 242 3.38E-7 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_11875 36d8cce8bee97a6bcc005ae13a09527e 243 SUPERFAMILY SSF54593 1 124 5.49E-14 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_04565 cd6b8205ac739fc13bd22277f8bee2b8 426 Gene3D G3DSA:1.20.1530.20 7 409 1.3E-86 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily RAM_04565 cd6b8205ac739fc13bd22277f8bee2b8 426 Pfam PF00999 Sodium/hydrogen exchanger family 15 400 2.3E-49 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 RAM_46700 0350bb66113ee030b458155ae10a1a22 214 Gene3D G3DSA:1.10.357.10 6 207 4.7E-29 T 13-10-2018 RAM_46700 0350bb66113ee030b458155ae10a1a22 214 SUPERFAMILY SSF46689 8 81 8.48E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_46700 0350bb66113ee030b458155ae10a1a22 214 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 22 35 1.0E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_46700 0350bb66113ee030b458155ae10a1a22 214 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 43 66 1.0E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_46700 0350bb66113ee030b458155ae10a1a22 214 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 68 4.6E-13 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_04145 15f4b0ef59e8aa706a9455f538c62580 151 Gene3D G3DSA:1.10.3210.10 24 89 1.7E-5 T 13-10-2018 RAM_04145 15f4b0ef59e8aa706a9455f538c62580 151 SUPERFAMILY SSF109604 3 99 3.05E-9 T 13-10-2018 RAM_04145 15f4b0ef59e8aa706a9455f538c62580 151 Pfam PF01966 HD domain 23 98 4.4E-5 T 13-10-2018 IPR006674 HD domain RAM_09120 036f37d8cb17a8b522e572ec85a40063 451 Pfam PF14592 Chondroitinase B 28 287 8.2E-36 T 13-10-2018 IPR039513 PL-6 family RAM_09120 036f37d8cb17a8b522e572ec85a40063 451 Gene3D G3DSA:2.160.20.10 28 402 1.1E-96 T 13-10-2018 IPR012334 Pectin lyase fold RAM_09120 036f37d8cb17a8b522e572ec85a40063 451 SUPERFAMILY SSF51126 28 406 1.62E-62 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor RAM_24945 9d63ea6f03e1fc7a2d9975e36fda697c 112 SUPERFAMILY SSF46785 5 108 1.42E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_24945 9d63ea6f03e1fc7a2d9975e36fda697c 112 Pfam PF12840 Helix-turn-helix domain 16 90 4.4E-15 T 13-10-2018 RAM_24945 9d63ea6f03e1fc7a2d9975e36fda697c 112 Gene3D G3DSA:1.10.10.10 2 111 2.6E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_24945 9d63ea6f03e1fc7a2d9975e36fda697c 112 SMART SM00418 16 110 1.1E-12 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_21760 de39163bb81f3ab6bbca93eca7226f95 186 SUPERFAMILY SSF53697 3 183 2.04E-46 T 13-10-2018 RAM_21760 de39163bb81f3ab6bbca93eca7226f95 186 Pfam PF13580 SIS domain 8 139 1.4E-28 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 RAM_21760 de39163bb81f3ab6bbca93eca7226f95 186 Gene3D G3DSA:3.40.50.10490 1 184 3.5E-65 T 13-10-2018 RAM_03115 9dc7a6c132898128131f4a68b52ab885 421 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 9 294 1.7E-57 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_03115 9dc7a6c132898128131f4a68b52ab885 421 Pfam PF02470 MlaD protein 38 114 7.0E-15 T 13-10-2018 IPR003399 Mce/MlaD RAM_23120 08734839a495512e85249540d7716b8c 346 Pfam PF02653 Branched-chain amino acid transport system / permease component 59 324 1.3E-43 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 RAM_21065 0f7ec9418c9b5b95eae680a4431f3108 553 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 35 325 8.0E-55 T 13-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 RAM_21065 0f7ec9418c9b5b95eae680a4431f3108 553 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 41 52 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 RAM_21065 0f7ec9418c9b5b95eae680a4431f3108 553 Gene3D G3DSA:3.40.50.620 28 372 2.7E-87 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAM_21065 0f7ec9418c9b5b95eae680a4431f3108 553 Gene3D G3DSA:1.10.10.350 458 553 1.3E-8 T 13-10-2018 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 RAM_21065 0f7ec9418c9b5b95eae680a4431f3108 553 SUPERFAMILY SSF48163 358 549 1.06E-12 T 13-10-2018 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 RAM_21065 0f7ec9418c9b5b95eae680a4431f3108 553 SUPERFAMILY SSF52374 35 326 2.28E-64 T 13-10-2018 RAM_21065 0f7ec9418c9b5b95eae680a4431f3108 553 PRINTS PR00987 Glutamyl-tRNA synthetase signature 67 80 3.8E-14 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 RAM_21065 0f7ec9418c9b5b95eae680a4431f3108 553 PRINTS PR00987 Glutamyl-tRNA synthetase signature 38 50 3.8E-14 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 RAM_21065 0f7ec9418c9b5b95eae680a4431f3108 553 PRINTS PR00987 Glutamyl-tRNA synthetase signature 251 259 3.8E-14 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 RAM_21065 0f7ec9418c9b5b95eae680a4431f3108 553 PRINTS PR00987 Glutamyl-tRNA synthetase signature 235 245 3.8E-14 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 RAM_17855 4a2e82116c0c35dfe371f312a2352915 309 Pfam PF01435 Peptidase family M48 119 205 2.8E-8 T 13-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 RAM_17855 4a2e82116c0c35dfe371f312a2352915 309 Gene3D G3DSA:3.30.2010.10 114 197 6.5E-8 T 13-10-2018 RAM_27755 319fd26f0519fab10d62084263c3cd28 218 SUPERFAMILY SSF51735 3 211 3.66E-53 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_27755 319fd26f0519fab10d62084263c3cd28 218 Gene3D G3DSA:3.40.50.720 2 218 3.5E-54 T 13-10-2018 RAM_27755 319fd26f0519fab10d62084263c3cd28 218 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 2 19 6.9E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_27755 319fd26f0519fab10d62084263c3cd28 218 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 163 180 6.9E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_27755 319fd26f0519fab10d62084263c3cd28 218 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 64 75 6.9E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_27755 319fd26f0519fab10d62084263c3cd28 218 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 113 129 6.9E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_27755 319fd26f0519fab10d62084263c3cd28 218 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 142 161 6.9E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_27755 319fd26f0519fab10d62084263c3cd28 218 Pfam PF00106 short chain dehydrogenase 3 183 3.8E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_27755 319fd26f0519fab10d62084263c3cd28 218 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 119 127 3.2E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_27755 319fd26f0519fab10d62084263c3cd28 218 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 142 161 3.2E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_27755 319fd26f0519fab10d62084263c3cd28 218 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 64 75 3.2E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_11230 f46b1a57dbab24d3eb714081e632b51f 93 Pfam PF01037 Lrp/AsnC ligand binding domain 6 76 2.9E-14 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RAM_11230 f46b1a57dbab24d3eb714081e632b51f 93 SUPERFAMILY SSF54909 2 77 8.18E-17 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_11230 f46b1a57dbab24d3eb714081e632b51f 93 Gene3D G3DSA:3.30.70.920 3 78 1.1E-19 T 13-10-2018 RAM_26685 46d9020e29243e1e9d706067accdcf9d 280 Pfam PF14011 EspG family 13 274 7.4E-39 T 13-10-2018 IPR025734 EspG family RAM_22380 a58af53f028fd4f4e1d0dd84015a5e38 307 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 68 272 1.1E-33 T 13-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 RAM_22380 a58af53f028fd4f4e1d0dd84015a5e38 307 Gene3D G3DSA:3.40.710.10 57 303 2.2E-59 T 13-10-2018 RAM_22380 a58af53f028fd4f4e1d0dd84015a5e38 307 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 135 152 6.5E-14 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RAM_22380 a58af53f028fd4f4e1d0dd84015a5e38 307 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 78 89 6.5E-14 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RAM_22380 a58af53f028fd4f4e1d0dd84015a5e38 307 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 162 175 6.5E-14 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RAM_22380 a58af53f028fd4f4e1d0dd84015a5e38 307 SUPERFAMILY SSF56601 54 282 6.93E-43 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_42825 63094ab0b3536c30c050472f7c46c198 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 1.7E-20 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_42825 63094ab0b3536c30c050472f7c46c198 300 Gene3D G3DSA:1.10.10.10 1 87 1.8E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_42825 63094ab0b3536c30c050472f7c46c198 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 7.1E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_42825 63094ab0b3536c30c050472f7c46c198 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 7.1E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_42825 63094ab0b3536c30c050472f7c46c198 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 7.1E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_42825 63094ab0b3536c30c050472f7c46c198 300 Pfam PF03466 LysR substrate binding domain 86 275 3.8E-39 T 13-10-2018 IPR005119 LysR, substrate-binding RAM_42825 63094ab0b3536c30c050472f7c46c198 300 SUPERFAMILY SSF53850 87 281 3.15E-36 T 13-10-2018 RAM_42825 63094ab0b3536c30c050472f7c46c198 300 Gene3D G3DSA:3.40.190.290 90 287 1.8E-39 T 13-10-2018 RAM_42825 63094ab0b3536c30c050472f7c46c198 300 SUPERFAMILY SSF46785 1 86 4.09E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_28915 1fbcd92448dd40a8940b389cf44a3eed 525 SUPERFAMILY SSF53850 29 364 2.51E-62 T 13-10-2018 RAM_28915 1fbcd92448dd40a8940b389cf44a3eed 525 Gene3D G3DSA:3.40.190.10 109 302 1.0E-100 T 13-10-2018 RAM_28915 1fbcd92448dd40a8940b389cf44a3eed 525 Gene3D G3DSA:3.40.190.10 32 350 1.0E-100 T 13-10-2018 RAM_28915 1fbcd92448dd40a8940b389cf44a3eed 525 TIGRFAM TIGR00975 3a0107s03: phosphate ABC transporter, phosphate-binding protein PstS 29 362 1.3E-62 T 13-10-2018 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 RAM_28915 1fbcd92448dd40a8940b389cf44a3eed 525 Pfam PF12849 PBP superfamily domain 23 335 5.8E-53 T 13-10-2018 IPR024370 PBP domain RAM_34015 662cd4794ae13eb739391cc6634202ef 341 Hamap MF_00081 Heat-inducible transcription repressor HrcA [hrcA]. 3 331 28.061 T 13-10-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 RAM_34015 662cd4794ae13eb739391cc6634202ef 341 Pfam PF08220 DeoR-like helix-turn-helix domain 18 64 1.8E-5 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RAM_34015 662cd4794ae13eb739391cc6634202ef 341 TIGRFAM TIGR00331 hrcA: heat-inducible transcription repressor HrcA 5 337 9.0E-97 T 13-10-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 RAM_34015 662cd4794ae13eb739391cc6634202ef 341 Gene3D G3DSA:3.30.390.60 129 230 8.0E-41 T 13-10-2018 IPR023120 Winged helix-turn-helix transcription repressor, HrcA, inserted dimerising domain superfamily RAM_34015 662cd4794ae13eb739391cc6634202ef 341 SUPERFAMILY SSF55781 73 339 1.9E-58 T 13-10-2018 RAM_34015 662cd4794ae13eb739391cc6634202ef 341 Pfam PF01628 HrcA protein C terminal domain 105 324 4.4E-64 T 13-10-2018 IPR021153 Heat-inducible transcription repressor HrcA, C-terminal GO:0003677|GO:0006355 RAM_34015 662cd4794ae13eb739391cc6634202ef 341 SUPERFAMILY SSF46785 4 84 2.9E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_34015 662cd4794ae13eb739391cc6634202ef 341 PIRSF PIRSF005485 1 341 5.6E-106 T 13-10-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 RAM_34015 662cd4794ae13eb739391cc6634202ef 341 Gene3D G3DSA:1.10.10.10 1 86 1.1E-33 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_34015 662cd4794ae13eb739391cc6634202ef 341 Gene3D G3DSA:3.30.450.40 105 335 8.0E-41 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_28165 53c03e503066009d990a9bfab2997d13 150 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 4 142 2.7E-8 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RAM_28165 53c03e503066009d990a9bfab2997d13 150 SUPERFAMILY SSF54593 4 146 3.36E-16 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_28165 53c03e503066009d990a9bfab2997d13 150 Gene3D G3DSA:3.10.180.10 2 145 4.0E-16 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_28295 d6ee1728f7597b00c45ad30ff32e9e9d 110 Pfam PF10824 Excreted virulence factor EspC, type VII ESX diderm 10 102 1.4E-8 T 13-10-2018 IPR022536 ESX-1 secretion-associated protein EspC GO:0009306 RAM_11215 5805b9afe34186000f991713b2a94868 388 Gene3D G3DSA:2.102.10.10 221 385 1.5E-33 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RAM_11215 5805b9afe34186000f991713b2a94868 388 Pfam PF00355 Rieske [2Fe-2S] domain 291 360 8.6E-11 T 13-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RAM_11215 5805b9afe34186000f991713b2a94868 388 SUPERFAMILY SSF50022 304 386 1.57E-25 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RAM_29375 282e6d003258630cc0666d9f88a5cf73 430 Pfam PF03600 Citrate transporter 14 369 6.1E-56 T 13-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 RAM_29375 282e6d003258630cc0666d9f88a5cf73 430 PRINTS PR00758 Arsenical pump membrane protein signature 219 244 3.9E-12 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 RAM_29375 282e6d003258630cc0666d9f88a5cf73 430 PRINTS PR00758 Arsenical pump membrane protein signature 276 300 3.9E-12 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 RAM_29375 282e6d003258630cc0666d9f88a5cf73 430 PRINTS PR00758 Arsenical pump membrane protein signature 103 127 3.9E-12 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 RAM_29375 282e6d003258630cc0666d9f88a5cf73 430 PRINTS PR00758 Arsenical pump membrane protein signature 365 390 3.9E-12 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 RAM_29375 282e6d003258630cc0666d9f88a5cf73 430 PRINTS PR00758 Arsenical pump membrane protein signature 398 422 3.9E-12 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 RAM_03065 769c5f1eb9bfdc0b8a636e00ac07a1d5 184 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 1 158 24.349 T 13-10-2018 IPR022973 Ribosomal protein L10 RAM_03065 769c5f1eb9bfdc0b8a636e00ac07a1d5 184 Pfam PF00466 Ribosomal protein L10 1 98 7.2E-26 T 13-10-2018 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 RAM_03065 769c5f1eb9bfdc0b8a636e00ac07a1d5 184 Gene3D G3DSA:3.30.70.1730 1 170 2.6E-36 T 13-10-2018 RAM_03065 769c5f1eb9bfdc0b8a636e00ac07a1d5 184 SUPERFAMILY SSF160369 1 168 1.28E-48 T 13-10-2018 RAM_10290 e7fc9469944261cdf3e59d8655d25861 417 Gene3D G3DSA:1.10.630.10 1 417 2.3E-125 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_10290 e7fc9469944261cdf3e59d8655d25861 417 Pfam PF00067 Cytochrome P450 241 396 5.2E-22 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_10290 e7fc9469944261cdf3e59d8655d25861 417 PRINTS PR00359 B-class P450 signature 358 367 3.8E-35 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_10290 e7fc9469944261cdf3e59d8655d25861 417 PRINTS PR00359 B-class P450 signature 337 352 3.8E-35 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_10290 e7fc9469944261cdf3e59d8655d25861 417 PRINTS PR00359 B-class P450 signature 309 336 3.8E-35 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_10290 e7fc9469944261cdf3e59d8655d25861 417 PRINTS PR00359 B-class P450 signature 292 303 3.8E-35 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_10290 e7fc9469944261cdf3e59d8655d25861 417 PRINTS PR00359 B-class P450 signature 77 88 3.8E-35 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_10290 e7fc9469944261cdf3e59d8655d25861 417 PRINTS PR00359 B-class P450 signature 367 378 3.8E-35 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_10290 e7fc9469944261cdf3e59d8655d25861 417 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 360 369 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RAM_10290 e7fc9469944261cdf3e59d8655d25861 417 SUPERFAMILY SSF48264 10 412 4.58E-86 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_46645 11f089b0dbdb41873f62d38c78a0a6b0 544 Pfam PF00999 Sodium/hydrogen exchanger family 14 405 1.5E-51 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 RAM_43645 479ff34a4dab467708ddfeedcf95470c 225 Pfam PF14011 EspG family 3 219 5.8E-24 T 13-10-2018 IPR025734 EspG family RAM_04545 4dc1dd34c9b06bd32c72dca00ff33f77 325 Pfam PF00248 Aldo/keto reductase family 16 304 2.6E-76 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain RAM_04545 4dc1dd34c9b06bd32c72dca00ff33f77 325 PRINTS PR00069 Aldo-keto reductase signature 136 153 7.7E-5 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_04545 4dc1dd34c9b06bd32c72dca00ff33f77 325 PRINTS PR00069 Aldo-keto reductase signature 41 65 7.7E-5 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_04545 4dc1dd34c9b06bd32c72dca00ff33f77 325 PRINTS PR00069 Aldo-keto reductase signature 105 123 7.7E-5 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_04545 4dc1dd34c9b06bd32c72dca00ff33f77 325 Gene3D G3DSA:3.20.20.100 1 324 1.2E-119 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_04545 4dc1dd34c9b06bd32c72dca00ff33f77 325 SUPERFAMILY SSF51430 7 304 1.11E-99 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_43920 e03e6821edd8387f58325ea83afb9be8 207 SUPERFAMILY SSF51219 2 202 1.88E-32 T 13-10-2018 IPR016031 Tryptophan RNA-binding attenuator protein-like domain superfamily RAM_43920 e03e6821edd8387f58325ea83afb9be8 207 Pfam PF01987 Mitochondrial biogenesis AIM24 7 199 9.1E-28 T 13-10-2018 IPR002838 Mitochondrial biogenesis protein AIM24 RAM_43920 e03e6821edd8387f58325ea83afb9be8 207 Gene3D G3DSA:3.60.160.10 1 206 4.0E-29 T 13-10-2018 IPR036983 Mitochondrial biogenesis AIM24 superfamily RAM_26390 2df4a1277e4dd42f9d4734b80b92b02c 333 SUPERFAMILY SSF50129 8 164 8.37E-35 T 13-10-2018 IPR011032 GroES-like superfamily RAM_26390 2df4a1277e4dd42f9d4734b80b92b02c 333 SUPERFAMILY SSF51735 131 303 3.52E-36 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_26390 2df4a1277e4dd42f9d4734b80b92b02c 333 Pfam PF00107 Zinc-binding dehydrogenase 169 294 3.1E-23 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RAM_26390 2df4a1277e4dd42f9d4734b80b92b02c 333 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 122 3.5E-8 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_26390 2df4a1277e4dd42f9d4734b80b92b02c 333 SMART SM00829 10 330 1.4E-12 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_26390 2df4a1277e4dd42f9d4734b80b92b02c 333 Gene3D G3DSA:3.90.180.10 16 322 1.7E-96 T 13-10-2018 RAM_26390 2df4a1277e4dd42f9d4734b80b92b02c 333 Gene3D G3DSA:3.40.50.720 140 280 1.7E-96 T 13-10-2018 RAM_42415 4eaf4da086523f56472da0daaae31093 278 Gene3D G3DSA:3.30.950.10 115 229 4.1E-41 T 13-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 RAM_42415 4eaf4da086523f56472da0daaae31093 278 SUPERFAMILY SSF53790 4 223 1.96E-72 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 RAM_42415 4eaf4da086523f56472da0daaae31093 278 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 6 273 2.6E-62 T 13-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 RAM_42415 4eaf4da086523f56472da0daaae31093 278 PIRSF PIRSF005917 1 278 4.5E-90 T 13-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 RAM_42415 4eaf4da086523f56472da0daaae31093 278 Gene3D G3DSA:3.40.1010.10 1 114 5.5E-32 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 RAM_42415 4eaf4da086523f56472da0daaae31093 278 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 5 208 1.3E-30 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 RAM_42415 4eaf4da086523f56472da0daaae31093 278 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 5 225 32.726 T 13-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 RAM_33725 b2ded4967b8bbd90434962d78e93d92d 361 Pfam PF00871 Acetokinase family 50 354 1.2E-82 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RAM_33725 b2ded4967b8bbd90434962d78e93d92d 361 SUPERFAMILY SSF53067 124 358 1.68E-63 T 13-10-2018 RAM_33725 b2ded4967b8bbd90434962d78e93d92d 361 PRINTS PR00471 Acetate kinase family signature 171 192 2.2E-20 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RAM_33725 b2ded4967b8bbd90434962d78e93d92d 361 PRINTS PR00471 Acetate kinase family signature 290 306 2.2E-20 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RAM_33725 b2ded4967b8bbd90434962d78e93d92d 361 PRINTS PR00471 Acetate kinase family signature 6 17 2.2E-20 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RAM_33725 b2ded4967b8bbd90434962d78e93d92d 361 PRINTS PR00471 Acetate kinase family signature 342 354 2.2E-20 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RAM_33725 b2ded4967b8bbd90434962d78e93d92d 361 PRINTS PR00471 Acetate kinase family signature 268 281 2.2E-20 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RAM_33725 b2ded4967b8bbd90434962d78e93d92d 361 Gene3D G3DSA:3.30.420.40 4 163 4.3E-38 T 13-10-2018 RAM_33725 b2ded4967b8bbd90434962d78e93d92d 361 SUPERFAMILY SSF53067 4 163 4.75E-38 T 13-10-2018 RAM_33725 b2ded4967b8bbd90434962d78e93d92d 361 Hamap MF_00020 Acetate kinase [ackA]. 1 361 107.561 T 13-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RAM_33725 b2ded4967b8bbd90434962d78e93d92d 361 Gene3D G3DSA:3.30.420.40 166 360 2.4E-57 T 13-10-2018 RAM_33725 b2ded4967b8bbd90434962d78e93d92d 361 PIRSF PIRSF000722 2 39 5.8 T 13-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RAM_33725 b2ded4967b8bbd90434962d78e93d92d 361 PIRSF PIRSF000722 36 361 3.8E-94 T 13-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RAM_46680 aac5f7eb243f984084f04829087e57ad 626 SUPERFAMILY SSF51971 7 189 2.41E-8 T 13-10-2018 RAM_46680 aac5f7eb243f984084f04829087e57ad 626 Pfam PF13454 FAD-NAD(P)-binding 10 184 6.4E-37 T 13-10-2018 IPR038732 FAD-dependent urate hydroxylase HpyO, FAD/NAD(P)-binding domain RAM_33310 c7fdb11a9119b64ec0e41d96a9f5655b 210 Pfam PF09335 SNARE associated Golgi protein 34 164 1.2E-17 T 13-10-2018 IPR032816 SNARE associated Golgi protein RAM_19605 7e0064a7d66670a7d50774961ccc0d83 394 Pfam PF04909 Amidohydrolase 97 392 3.1E-21 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RAM_19605 7e0064a7d66670a7d50774961ccc0d83 394 SUPERFAMILY SSF51556 7 392 1.75E-53 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_19605 7e0064a7d66670a7d50774961ccc0d83 394 Gene3D G3DSA:3.20.20.140 1 392 1.5E-78 T 13-10-2018 RAM_36890 14521343eefaada73b95744aee9ff967 534 SUPERFAMILY SSF56425 287 474 8.22E-32 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_36890 14521343eefaada73b95744aee9ff967 534 Gene3D G3DSA:3.50.50.60 8 525 1.2E-154 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_36890 14521343eefaada73b95744aee9ff967 534 Gene3D G3DSA:3.90.700.10 299 463 1.2E-154 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_36890 14521343eefaada73b95744aee9ff967 534 SUPERFAMILY SSF51905 1 532 2.67E-35 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_36890 14521343eefaada73b95744aee9ff967 534 Pfam PF00890 FAD binding domain 9 514 5.1E-80 T 13-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_00985 b234aadd79d4600434fdd57f261c2cc7 333 Pfam PF12079 Protein of unknown function (DUF3558) 174 323 4.5E-11 T 13-10-2018 IPR024520 Protein of unknown function DUF3558 RAM_00985 b234aadd79d4600434fdd57f261c2cc7 333 Pfam PF12079 Protein of unknown function (DUF3558) 16 166 4.5E-9 T 13-10-2018 IPR024520 Protein of unknown function DUF3558 RAM_16600 28fa030a6c29003dfd880fc418a8b159 241 Gene3D G3DSA:3.30.565.10 103 241 5.3E-18 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_16600 28fa030a6c29003dfd880fc418a8b159 241 SUPERFAMILY SSF55874 145 238 5.42E-5 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_22980 a397f217cc1ca956f2e58b0da9218db6 356 Gene3D G3DSA:3.40.50.2300 171 300 3.5E-73 T 13-10-2018 RAM_22980 a397f217cc1ca956f2e58b0da9218db6 356 Pfam PF13377 Periplasmic binding protein-like domain 179 340 5.8E-42 T 13-10-2018 RAM_22980 a397f217cc1ca956f2e58b0da9218db6 356 Gene3D G3DSA:1.10.260.40 13 70 1.4E-15 T 13-10-2018 RAM_22980 a397f217cc1ca956f2e58b0da9218db6 356 Pfam PF00356 Bacterial regulatory proteins, lacI family 16 59 1.4E-11 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_22980 a397f217cc1ca956f2e58b0da9218db6 356 SUPERFAMILY SSF47413 14 62 7.64E-12 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_22980 a397f217cc1ca956f2e58b0da9218db6 356 SMART SM00354 14 81 6.8E-7 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RAM_22980 a397f217cc1ca956f2e58b0da9218db6 356 SUPERFAMILY SSF53822 72 346 1.99E-77 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_22980 a397f217cc1ca956f2e58b0da9218db6 356 Gene3D G3DSA:3.40.50.2300 79 332 3.5E-73 T 13-10-2018 RAM_11575 74e1e96dcbbc956abf4ca3f8911679c9 197 Gene3D G3DSA:1.10.357.10 6 193 2.1E-55 T 13-10-2018 RAM_11575 74e1e96dcbbc956abf4ca3f8911679c9 197 SUPERFAMILY SSF46689 3 68 3.18E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_11575 74e1e96dcbbc956abf4ca3f8911679c9 197 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 57 9.8E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_09975 e2be46ad001dd51c4b8f58ce3312f0c5 125 SUPERFAMILY SSF52980 17 110 2.68E-17 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 RAM_09975 e2be46ad001dd51c4b8f58ce3312f0c5 125 Gene3D G3DSA:3.40.1350.10 17 125 1.4E-26 T 13-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 RAM_09975 e2be46ad001dd51c4b8f58ce3312f0c5 125 Pfam PF02021 Uncharacterised protein family UPF0102 18 108 3.9E-25 T 13-10-2018 IPR003509 Uncharacterised protein family UPF0102 RAM_09975 e2be46ad001dd51c4b8f58ce3312f0c5 125 Hamap MF_00048 UPF0102 protein YraN [yraN]. 11 121 20.586 T 13-10-2018 IPR003509 Uncharacterised protein family UPF0102 RAM_09495 96368203ba846020401fcb45a717e2e4 813 SUPERFAMILY SSF54665 9 160 3.01E-44 T 13-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily RAM_09495 96368203ba846020401fcb45a717e2e4 813 SUPERFAMILY SSF56003 131 785 9.68E-201 T 13-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 RAM_09495 96368203ba846020401fcb45a717e2e4 813 Gene3D G3DSA:3.90.1170.50 2 139 2.5E-46 T 13-10-2018 RAM_09495 96368203ba846020401fcb45a717e2e4 813 SMART SM01008 23 139 3.9E-50 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RAM_09495 96368203ba846020401fcb45a717e2e4 813 Gene3D G3DSA:3.30.365.10 433 782 1.3E-134 T 13-10-2018 RAM_09495 96368203ba846020401fcb45a717e2e4 813 Gene3D G3DSA:3.30.365.10 202 294 2.6E-70 T 13-10-2018 RAM_09495 96368203ba846020401fcb45a717e2e4 813 Gene3D G3DSA:3.30.365.10 178 409 2.6E-70 T 13-10-2018 RAM_09495 96368203ba846020401fcb45a717e2e4 813 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 23 139 6.5E-27 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RAM_09495 96368203ba846020401fcb45a717e2e4 813 Gene3D G3DSA:3.30.365.10 469 637 1.3E-134 T 13-10-2018 RAM_09495 96368203ba846020401fcb45a717e2e4 813 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 175 722 2.1E-172 T 13-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RAM_20170 34386c5fafa9dcf616b3e0cffee3623e 487 Gene3D G3DSA:3.40.710.10 2 342 8.2E-53 T 13-10-2018 RAM_20170 34386c5fafa9dcf616b3e0cffee3623e 487 SUPERFAMILY SSF56601 2 338 4.54E-50 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_20170 34386c5fafa9dcf616b3e0cffee3623e 487 Pfam PF00144 Beta-lactamase 17 337 1.0E-38 T 13-10-2018 IPR001466 Beta-lactamase-related RAM_10625 37283d107b8ab35333c7a7f24ffb19b3 370 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 147 363 8.5E-68 T 13-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain RAM_10625 37283d107b8ab35333c7a7f24ffb19b3 370 SUPERFAMILY SSF52283 11 174 9.35E-49 T 13-10-2018 RAM_10625 37283d107b8ab35333c7a7f24ffb19b3 370 Gene3D G3DSA:3.40.50.720 12 363 3.3E-138 T 13-10-2018 RAM_10625 37283d107b8ab35333c7a7f24ffb19b3 370 SMART SM01003 13 143 2.2E-61 T 13-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal RAM_10625 37283d107b8ab35333c7a7f24ffb19b3 370 SUPERFAMILY SSF51735 144 318 1.88E-37 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_10625 37283d107b8ab35333c7a7f24ffb19b3 370 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 13 142 1.4E-40 T 13-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal RAM_10625 37283d107b8ab35333c7a7f24ffb19b3 370 SMART SM01002 152 314 2.2E-78 T 13-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain RAM_10625 37283d107b8ab35333c7a7f24ffb19b3 370 Gene3D G3DSA:3.40.50.720 143 321 3.3E-138 T 13-10-2018 RAM_10105 9178469ad79e11fbc3a7a027c2ac81bf 263 Pfam PF02633 Creatinine amidohydrolase 8 246 2.8E-57 T 13-10-2018 IPR003785 Creatininase/formamide hydrolase KEGG: 00740+3.5.1.102|MetaCyc: PWY-6167 RAM_10105 9178469ad79e11fbc3a7a027c2ac81bf 263 SUPERFAMILY SSF102215 3 253 4.32E-59 T 13-10-2018 IPR024087 Creatininase-like superfamily KEGG: 00740+3.5.1.102|MetaCyc: PWY-6167 RAM_10105 9178469ad79e11fbc3a7a027c2ac81bf 263 Gene3D G3DSA:3.40.50.10310 15 253 1.3E-60 T 13-10-2018 IPR024087 Creatininase-like superfamily KEGG: 00740+3.5.1.102|MetaCyc: PWY-6167 RAM_24430 f1849a2fc1acd2f038941dc8cbcb6c9a 234 Gene3D G3DSA:3.40.50.1860 2 221 5.0E-66 T 13-10-2018 RAM_24430 f1849a2fc1acd2f038941dc8cbcb6c9a 234 Pfam PF01177 Asp/Glu/Hydantoin racemase 5 222 2.6E-47 T 13-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RAM_24430 f1849a2fc1acd2f038941dc8cbcb6c9a 234 TIGRFAM TIGR00035 asp_race: aspartate racemase 1 225 5.1E-41 T 13-10-2018 IPR004380 Aspartate racemase GO:0006520|GO:0016855 RAM_24430 f1849a2fc1acd2f038941dc8cbcb6c9a 234 SUPERFAMILY SSF53681 1 109 2.75E-24 T 13-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RAM_24430 f1849a2fc1acd2f038941dc8cbcb6c9a 234 Gene3D G3DSA:3.40.50.1860 103 214 5.0E-66 T 13-10-2018 RAM_24430 f1849a2fc1acd2f038941dc8cbcb6c9a 234 SUPERFAMILY SSF53681 119 225 2.13E-19 T 13-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RAM_11250 07959b69a6e1ccc1a6bacb423a42bb56 352 Pfam PF00877 NlpC/P60 family 252 346 3.4E-26 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain RAM_11250 07959b69a6e1ccc1a6bacb423a42bb56 352 Gene3D G3DSA:3.90.1720.10 150 349 9.3E-51 T 13-10-2018 RAM_11250 07959b69a6e1ccc1a6bacb423a42bb56 352 SUPERFAMILY SSF54001 235 350 2.62E-41 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily RAM_44870 77f15280771f8f62816d5e7f2aa1c673 119 Gene3D G3DSA:3.30.1130.10 1 119 6.8E-45 T 13-10-2018 RAM_44870 77f15280771f8f62816d5e7f2aa1c673 119 SUPERFAMILY SSF55620 1 119 2.28E-36 T 13-10-2018 RAM_44870 77f15280771f8f62816d5e7f2aa1c673 119 TIGRFAM TIGR00525 folB: dihydroneopterin aldolase 3 117 4.4E-39 T 13-10-2018 IPR006156 Dihydroneopterin aldolase GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 RAM_44870 77f15280771f8f62816d5e7f2aa1c673 119 SMART SM00905 5 117 1.4E-51 T 13-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 RAM_44870 77f15280771f8f62816d5e7f2aa1c673 119 Pfam PF02152 Dihydroneopterin aldolase 5 116 1.8E-34 T 13-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 RAM_44870 77f15280771f8f62816d5e7f2aa1c673 119 TIGRFAM TIGR00526 folB_dom: FolB domain 2 118 1.7E-33 T 13-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 RAM_39585 0c30acd0d4c61e4c7cb44669e2345681 255 SUPERFAMILY SSF56281 2 237 1.57E-43 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_39585 0c30acd0d4c61e4c7cb44669e2345681 255 SMART SM00849 18 205 0.0064 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_39585 0c30acd0d4c61e4c7cb44669e2345681 255 Gene3D G3DSA:3.60.15.10 1 255 3.8E-67 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_39585 0c30acd0d4c61e4c7cb44669e2345681 255 Pfam PF12706 Beta-lactamase superfamily domain 44 224 3.6E-22 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_18300 71799c3f7f02adedaa3d13df424c2a10 182 Gene3D G3DSA:3.40.1050.10 1 175 1.2E-41 T 13-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 RAM_18300 71799c3f7f02adedaa3d13df424c2a10 182 SUPERFAMILY SSF53056 5 173 2.75E-25 T 13-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 RAM_18300 71799c3f7f02adedaa3d13df424c2a10 182 Pfam PF00484 Carbonic anhydrase 31 170 3.3E-8 T 13-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RAM_18300 71799c3f7f02adedaa3d13df424c2a10 182 SMART SM00947 23 174 2.0E-6 T 13-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RAM_34175 7aea7b8b2978efea748b3fe1e48fca03 245 SUPERFAMILY SSF53800 4 236 1.31E-38 T 13-10-2018 RAM_34175 7aea7b8b2978efea748b3fe1e48fca03 245 Pfam PF01903 CbiX 134 230 5.1E-13 T 13-10-2018 IPR002762 Cobalamin (vitamin B12) biosynthesis CbiX GO:0009236|GO:0016852 KEGG: 00860+4.99.1.3|MetaCyc: PWY-7377 RAM_34175 7aea7b8b2978efea748b3fe1e48fca03 245 Pfam PF01903 CbiX 10 112 2.1E-22 T 13-10-2018 IPR002762 Cobalamin (vitamin B12) biosynthesis CbiX GO:0009236|GO:0016852 KEGG: 00860+4.99.1.3|MetaCyc: PWY-7377 RAM_34175 7aea7b8b2978efea748b3fe1e48fca03 245 Gene3D G3DSA:3.40.50.1400 125 238 1.8E-20 T 13-10-2018 RAM_34175 7aea7b8b2978efea748b3fe1e48fca03 245 Gene3D G3DSA:3.40.50.1400 3 122 1.3E-27 T 13-10-2018 RAM_01320 17eb7968b239b52918401eeb87835016 202 Pfam PF07077 Protein of unknown function (DUF1345) 31 195 5.3E-9 T 13-10-2018 IPR009781 Protein of unknown function DUF1345 RAM_01320 17eb7968b239b52918401eeb87835016 202 SUPERFAMILY SSF81324 142 201 2.35E-5 T 13-10-2018 RAM_35900 04bcece50f85fe315dccfc08fa083603 424 Gene3D G3DSA:3.30.70.270 235 410 1.5E-44 T 13-10-2018 RAM_35900 04bcece50f85fe315dccfc08fa083603 424 SMART SM00267 230 409 3.5E-37 T 13-10-2018 IPR000160 GGDEF domain RAM_35900 04bcece50f85fe315dccfc08fa083603 424 SUPERFAMILY SSF55073 249 408 1.33E-37 T 13-10-2018 IPR029787 Nucleotide cyclase RAM_35900 04bcece50f85fe315dccfc08fa083603 424 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 238 409 3.9E-42 T 13-10-2018 IPR000160 GGDEF domain RAM_35900 04bcece50f85fe315dccfc08fa083603 424 Pfam PF00990 Diguanylate cyclase, GGDEF domain 241 405 6.2E-35 T 13-10-2018 IPR000160 GGDEF domain RAM_04520 6a95ad068d9a3aec578bb9e6c8ad428c 323 Pfam PF00805 Pentapeptide repeats (8 copies) 206 233 0.0029 T 13-10-2018 IPR001646 Pentapeptide repeat RAM_04520 6a95ad068d9a3aec578bb9e6c8ad428c 323 Gene3D G3DSA:2.160.20.100 202 323 3.6E-8 T 13-10-2018 RAM_04520 6a95ad068d9a3aec578bb9e6c8ad428c 323 SUPERFAMILY SSF141571 206 318 3.01E-5 T 13-10-2018 RAM_00605 bcb0fca870c3f7d9b93c3433c479b7b8 427 Pfam PF16822 SGNH hydrolase-like domain, acetyltransferase AlgX 144 277 2.6E-17 T 13-10-2018 IPR031811 AlgX/AlgJ, SGNH hydrolase-like domain RAM_00025 231431f00fa753fcb49ac0d31d13f976 167 Pfam PF05258 Protein of unknown function (DUF721) 55 142 1.4E-24 T 13-10-2018 IPR007922 Protein of unknown function DUF721/UPF0232 RAM_32530 1785f044d4b254d14fa37ac99692b059 337 SUPERFAMILY SSF53383 14 336 2.72E-43 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_32530 1785f044d4b254d14fa37ac99692b059 337 Pfam PF00266 Aminotransferase class-V 47 284 1.6E-11 T 13-10-2018 IPR000192 Aminotransferase class V domain RAM_32530 1785f044d4b254d14fa37ac99692b059 337 Gene3D G3DSA:3.40.640.10 24 266 8.8E-48 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_32530 1785f044d4b254d14fa37ac99692b059 337 Gene3D G3DSA:3.90.1150.10 14 332 8.8E-48 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_46060 1152f81dfa4487d962a9243397e339bb 158 Pfam PF01037 Lrp/AsnC ligand binding domain 75 145 2.9E-10 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RAM_46060 1152f81dfa4487d962a9243397e339bb 158 SUPERFAMILY SSF54909 71 153 1.52E-12 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_46060 1152f81dfa4487d962a9243397e339bb 158 SMART SM00344 10 115 4.2E-28 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RAM_46060 1152f81dfa4487d962a9243397e339bb 158 SUPERFAMILY SSF46785 9 60 6.98E-10 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_46060 1152f81dfa4487d962a9243397e339bb 158 Pfam PF13404 AsnC-type helix-turn-helix domain 10 50 5.6E-17 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_46060 1152f81dfa4487d962a9243397e339bb 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 26 37 1.5E-11 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_46060 1152f81dfa4487d962a9243397e339bb 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 10 26 1.5E-11 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_46060 1152f81dfa4487d962a9243397e339bb 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 37 56 1.5E-11 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_46060 1152f81dfa4487d962a9243397e339bb 158 Gene3D G3DSA:3.30.70.920 61 153 7.5E-17 T 13-10-2018 RAM_46060 1152f81dfa4487d962a9243397e339bb 158 Gene3D G3DSA:1.10.10.10 8 59 4.5E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_29730 ae765e037abfad858cd3e7b6e6811fcd 1728 Gene3D G3DSA:3.30.565.10 38 236 1.5E-7 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_29730 ae765e037abfad858cd3e7b6e6811fcd 1728 Pfam PF13020 Domain of unknown function (DUF3883) 1624 1695 5.8E-7 T 13-10-2018 IPR024975 Domain of unknown function DUF3883 RAM_29730 ae765e037abfad858cd3e7b6e6811fcd 1728 SUPERFAMILY SSF55874 42 149 3.36E-10 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_26755 81d4f5347e67268ef2842f39eb1c3120 737 Gene3D G3DSA:2.60.120.260 39 167 3.0E-40 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_26755 81d4f5347e67268ef2842f39eb1c3120 737 SUPERFAMILY SSF49785 44 167 1.06E-31 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_26755 81d4f5347e67268ef2842f39eb1c3120 737 SUPERFAMILY SSF51126 445 704 2.15E-7 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor RAM_26755 81d4f5347e67268ef2842f39eb1c3120 737 Pfam PF00754 F5/8 type C domain 50 162 6.8E-27 T 13-10-2018 IPR000421 Coagulation factor 5/8 C-terminal domain RAM_08785 c601d30edd80aab04817d3d1e060aa01 239 SMART SM00563 46 164 5.3E-27 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 RAM_08785 c601d30edd80aab04817d3d1e060aa01 239 SUPERFAMILY SSF69593 22 226 1.03E-42 T 13-10-2018 RAM_08785 c601d30edd80aab04817d3d1e060aa01 239 Pfam PF01553 Acyltransferase 36 160 1.5E-22 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 RAM_36165 881c9d1567a39bc2dac7a326b6af76a8 238 Pfam PF02654 Cobalamin-5-phosphate synthase 2 233 1.0E-36 T 13-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 RAM_36165 881c9d1567a39bc2dac7a326b6af76a8 238 Hamap MF_00719 Adenosylcobinamide-GDP ribazoletransferase [cobS]. 1 238 37.898 T 13-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 RAM_25410 02cff80a34708d74c01a2c77e02ec598 128 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 49 78 - T 13-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 RAM_25410 02cff80a34708d74c01a2c77e02ec598 128 SUPERFAMILY SSF51230 4 127 1.44E-43 T 13-10-2018 IPR011053 Single hybrid motif RAM_25410 02cff80a34708d74c01a2c77e02ec598 128 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 3 126 2.2E-50 T 13-10-2018 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 RAM_25410 02cff80a34708d74c01a2c77e02ec598 128 Gene3D G3DSA:2.40.50.100 2 127 2.0E-50 T 13-10-2018 RAM_25410 02cff80a34708d74c01a2c77e02ec598 128 Pfam PF01597 Glycine cleavage H-protein 7 127 3.7E-44 T 13-10-2018 IPR033753 Glycine cleavage system H-protein/Simiate RAM_25410 02cff80a34708d74c01a2c77e02ec598 128 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 4 127 39.575 T 13-10-2018 IPR002930 Glycine cleavage system H-protein GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 RAM_03520 d8ec78bd7339f2589f623a24336acbb6 187 Pfam PF00673 ribosomal L5P family C-terminus 91 184 3.0E-38 T 13-10-2018 IPR031309 Ribosomal protein L5, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_03520 d8ec78bd7339f2589f623a24336acbb6 187 Gene3D G3DSA:3.30.1440.10 7 186 2.2E-76 T 13-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_03520 d8ec78bd7339f2589f623a24336acbb6 187 SUPERFAMILY SSF55282 10 185 6.12E-72 T 13-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_03520 d8ec78bd7339f2589f623a24336acbb6 187 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 8 186 42.262 T 13-10-2018 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_03520 d8ec78bd7339f2589f623a24336acbb6 187 Pfam PF00281 Ribosomal protein L5 31 87 7.0E-26 T 13-10-2018 IPR031310 Ribosomal protein L5, N-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_03520 d8ec78bd7339f2589f623a24336acbb6 187 PIRSF PIRSF002161 4 187 3.0E-61 T 13-10-2018 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_42070 0649638908ed34f327cb5a2316074221 333 SMART SM00382 36 236 1.9E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_42070 0649638908ed34f327cb5a2316074221 333 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 236 322 1.9E-25 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RAM_42070 0649638908ed34f327cb5a2316074221 333 SUPERFAMILY SSF52540 7 257 1.28E-65 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_42070 0649638908ed34f327cb5a2316074221 333 Pfam PF00005 ABC transporter 27 186 3.3E-25 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_42070 0649638908ed34f327cb5a2316074221 333 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 238 302 6.7E-19 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RAM_42070 0649638908ed34f327cb5a2316074221 333 ProSitePatterns PS00211 ABC transporters family signature. 159 173 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_42070 0649638908ed34f327cb5a2316074221 333 Gene3D G3DSA:3.40.50.300 5 331 3.8E-97 T 13-10-2018 RAM_23610 4ddd09f2e79907996b5109bf9950aaf8 235 TIGRFAM TIGR03848 MSMEG_4193: probable phosphomutase, MSMEG_4193 family 3 205 2.2E-97 T 13-10-2018 IPR022492 Phosphomutase MSMEG4193, putative RAM_23610 4ddd09f2e79907996b5109bf9950aaf8 235 SUPERFAMILY SSF53254 3 201 2.14E-41 T 13-10-2018 IPR029033 Histidine phosphatase superfamily RAM_23610 4ddd09f2e79907996b5109bf9950aaf8 235 Gene3D G3DSA:3.40.50.1240 2 205 1.3E-43 T 13-10-2018 IPR029033 Histidine phosphatase superfamily RAM_23610 4ddd09f2e79907996b5109bf9950aaf8 235 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 200 7.7E-47 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 RAM_23610 4ddd09f2e79907996b5109bf9950aaf8 235 SMART SM00855 3 161 1.7E-20 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 RAM_14465 5c78bf0396c3fcbac72e7855820457c7 161 SUPERFAMILY SSF54427 5 144 1.46E-34 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_14465 5c78bf0396c3fcbac72e7855820457c7 161 Pfam PF13577 SnoaL-like domain 9 132 2.9E-30 T 13-10-2018 IPR037401 SnoaL-like domain RAM_14465 5c78bf0396c3fcbac72e7855820457c7 161 Gene3D G3DSA:3.10.450.50 4 154 1.5E-40 T 13-10-2018 RAM_43160 75c22918cc0c1457b8bf4501f0a668be 542 Pfam PF13193 AMP-binding enzyme C-terminal domain 448 522 4.6E-19 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_43160 75c22918cc0c1457b8bf4501f0a668be 542 Gene3D G3DSA:3.30.300.310 434 536 2.1E-34 T 13-10-2018 RAM_43160 75c22918cc0c1457b8bf4501f0a668be 542 SUPERFAMILY SSF56801 9 535 3.79E-139 T 13-10-2018 RAM_43160 75c22918cc0c1457b8bf4501f0a668be 542 Gene3D G3DSA:3.40.50.12780 1 433 8.0E-112 T 13-10-2018 RAM_43160 75c22918cc0c1457b8bf4501f0a668be 542 Pfam PF00501 AMP-binding enzyme 31 438 1.3E-89 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_43160 75c22918cc0c1457b8bf4501f0a668be 542 ProSitePatterns PS00455 Putative AMP-binding domain signature. 182 193 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_05070 4375bcba9850453229c2e5e10124214e 557 ProSitePatterns PS00455 Putative AMP-binding domain signature. 185 196 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_05070 4375bcba9850453229c2e5e10124214e 557 SUPERFAMILY SSF56801 18 554 3.14E-144 T 13-10-2018 RAM_05070 4375bcba9850453229c2e5e10124214e 557 Pfam PF00501 AMP-binding enzyme 30 458 6.4E-99 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_05070 4375bcba9850453229c2e5e10124214e 557 Pfam PF13193 AMP-binding enzyme C-terminal domain 469 542 4.1E-15 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_05070 4375bcba9850453229c2e5e10124214e 557 Gene3D G3DSA:3.40.50.12780 14 456 1.8E-117 T 13-10-2018 RAM_05070 4375bcba9850453229c2e5e10124214e 557 Gene3D G3DSA:3.30.300.310 457 555 2.1E-25 T 13-10-2018 RAM_28235 a427901ce306be890e8c798c8e2abad2 304 Pfam PF00535 Glycosyl transferase family 2 8 137 1.5E-25 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RAM_28235 a427901ce306be890e8c798c8e2abad2 304 Gene3D G3DSA:3.90.550.10 4 254 5.5E-61 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_28235 a427901ce306be890e8c798c8e2abad2 304 Pfam PF02709 N-terminal domain of galactosyltransferase 180 229 2.1E-5 T 13-10-2018 IPR027791 Galactosyltransferase, C-terminal Reactome: R-HSA-2022854|Reactome: R-HSA-975577 RAM_28235 a427901ce306be890e8c798c8e2abad2 304 SUPERFAMILY SSF53448 5 246 1.55E-49 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_11280 8b3721d69dbde6a5d9d69d93ad9cf78d 748 SMART SM00947 564 734 7.4E-57 T 13-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RAM_11280 8b3721d69dbde6a5d9d69d93ad9cf78d 748 SUPERFAMILY SSF53056 532 741 3.4E-53 T 13-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 RAM_11280 8b3721d69dbde6a5d9d69d93ad9cf78d 748 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 619 639 - T 13-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RAM_11280 8b3721d69dbde6a5d9d69d93ad9cf78d 748 Gene3D G3DSA:3.40.1050.10 522 743 3.5E-60 T 13-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 RAM_11280 8b3721d69dbde6a5d9d69d93ad9cf78d 748 Pfam PF00916 Sulfate permease family 23 371 9.9E-68 T 13-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 RAM_11280 8b3721d69dbde6a5d9d69d93ad9cf78d 748 Pfam PF00484 Carbonic anhydrase 571 729 5.3E-44 T 13-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RAM_02645 248b08859162920fa08d7c4bd01e496f 257 Pfam PF03704 Bacterial transcriptional activator domain 95 236 9.6E-38 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_02645 248b08859162920fa08d7c4bd01e496f 257 Gene3D G3DSA:1.10.10.10 1 91 3.6E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_02645 248b08859162920fa08d7c4bd01e496f 257 SMART SM00862 15 88 3.0E-4 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_02645 248b08859162920fa08d7c4bd01e496f 257 SUPERFAMILY SSF48452 91 249 2.73E-30 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_02645 248b08859162920fa08d7c4bd01e496f 257 Gene3D G3DSA:1.25.40.10 93 254 1.0E-42 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_02645 248b08859162920fa08d7c4bd01e496f 257 Pfam PF00486 Transcriptional regulatory protein, C terminal 26 78 7.1E-6 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_02645 248b08859162920fa08d7c4bd01e496f 257 SUPERFAMILY SSF46894 2 88 4.54E-10 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_02645 248b08859162920fa08d7c4bd01e496f 257 SMART SM01043 95 236 3.9E-39 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_00750 be16b68a1480432d6e8f35d76c80a110 187 Pfam PF00210 Ferritin-like domain 18 153 4.3E-34 T 13-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 RAM_00750 be16b68a1480432d6e8f35d76c80a110 187 SUPERFAMILY SSF47240 15 159 8.77E-44 T 13-10-2018 IPR009078 Ferritin-like superfamily RAM_00750 be16b68a1480432d6e8f35d76c80a110 187 Gene3D G3DSA:1.20.1260.10 6 187 1.8E-52 T 13-10-2018 IPR012347 Ferritin-like RAM_12770 b7a72165968a9b143b220c273e250cbe 128 Gene3D G3DSA:3.10.129.10 3 127 1.4E-27 T 13-10-2018 RAM_12770 b7a72165968a9b143b220c273e250cbe 128 SUPERFAMILY SSF54637 5 120 3.91E-14 T 13-10-2018 IPR029069 HotDog domain superfamily RAM_12690 018cf6f1b4e1ab57d21451be72dcb4e8 146 Gene3D G3DSA:3.30.530.20 1 143 6.1E-49 T 13-10-2018 IPR023393 START-like domain superfamily RAM_12690 018cf6f1b4e1ab57d21451be72dcb4e8 146 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 11 138 6.1E-32 T 13-10-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like RAM_12690 018cf6f1b4e1ab57d21451be72dcb4e8 146 SUPERFAMILY SSF55961 1 140 1.31E-43 T 13-10-2018 RAM_18210 2c9bafedae672fbe8021f93f105d6002 434 SMART SM00304 157 210 1.6E-4 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_18210 2c9bafedae672fbe8021f93f105d6002 434 Gene3D G3DSA:1.10.287.130 161 287 1.8E-21 T 13-10-2018 RAM_18210 2c9bafedae672fbe8021f93f105d6002 434 SUPERFAMILY SSF55874 276 427 5.37E-34 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_18210 2c9bafedae672fbe8021f93f105d6002 434 Gene3D G3DSA:3.30.565.10 291 432 1.8E-31 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_18210 2c9bafedae672fbe8021f93f105d6002 434 SMART SM00387 327 433 1.9E-28 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_18210 2c9bafedae672fbe8021f93f105d6002 434 PRINTS PR00344 Bacterial sensor protein C-terminal signature 360 374 2.6E-7 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_18210 2c9bafedae672fbe8021f93f105d6002 434 PRINTS PR00344 Bacterial sensor protein C-terminal signature 393 411 2.6E-7 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_18210 2c9bafedae672fbe8021f93f105d6002 434 PRINTS PR00344 Bacterial sensor protein C-terminal signature 378 388 2.6E-7 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_18210 2c9bafedae672fbe8021f93f105d6002 434 Pfam PF00512 His Kinase A (phospho-acceptor) domain 220 286 3.5E-16 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_18210 2c9bafedae672fbe8021f93f105d6002 434 SUPERFAMILY SSF47384 206 286 1.77E-15 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RAM_18210 2c9bafedae672fbe8021f93f105d6002 434 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 327 427 4.5E-19 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_18210 2c9bafedae672fbe8021f93f105d6002 434 SMART SM00388 218 286 8.0E-18 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_13180 198c3651ba59cf3a0370eaa6d4a4eb9b 570 Pfam PF11941 Domain of unknown function (DUF3459) 482 565 1.3E-16 T 13-10-2018 IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) RAM_13180 198c3651ba59cf3a0370eaa6d4a4eb9b 570 SUPERFAMILY SSF81296 2 73 2.2E-14 T 13-10-2018 IPR014756 Immunoglobulin E-set RAM_13180 198c3651ba59cf3a0370eaa6d4a4eb9b 570 TIGRFAM TIGR02402 trehalose_TreZ: malto-oligosyltrehalose trehalohydrolase 1 535 1.4E-222 T 13-10-2018 IPR012768 Malto-oligosyltrehalose trehalohydrolase GO:0004553|GO:0005992 KEGG: 00500+3.2.1.141|MetaCyc: PWY-2661 RAM_13180 198c3651ba59cf3a0370eaa6d4a4eb9b 570 SUPERFAMILY SSF51445 69 496 2.48E-108 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_13180 198c3651ba59cf3a0370eaa6d4a4eb9b 570 Gene3D G3DSA:1.10.10.760 423 463 4.8E-167 T 13-10-2018 RAM_13180 198c3651ba59cf3a0370eaa6d4a4eb9b 570 Gene3D G3DSA:3.20.20.80 82 491 4.8E-167 T 13-10-2018 RAM_13180 198c3651ba59cf3a0370eaa6d4a4eb9b 570 PIRSF PIRSF006337 1 566 1.6E-221 T 13-10-2018 IPR012768 Malto-oligosyltrehalose trehalohydrolase GO:0004553|GO:0005992 KEGG: 00500+3.2.1.141|MetaCyc: PWY-2661 RAM_13180 198c3651ba59cf3a0370eaa6d4a4eb9b 570 Pfam PF00128 Alpha amylase, catalytic domain 104 189 8.5E-12 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RAM_13180 198c3651ba59cf3a0370eaa6d4a4eb9b 570 Gene3D G3DSA:2.60.40.10 1 78 1.4E-20 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_13180 198c3651ba59cf3a0370eaa6d4a4eb9b 570 SMART SM00642 94 440 2.6E-9 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RAM_37780 600a1b6fbdaecddc54e8a7ee3fc96b20 1697 ProDom PD039135 WALL-ASSOCIATED REPEAT PROTEIN CELL WALL HYDROLASE PRECURSOR SIGNAL TRANSMEMBRANE RETICULOCYTE 62 255 3.0E-5 T 13-10-2018 RAM_37780 600a1b6fbdaecddc54e8a7ee3fc96b20 1697 SUPERFAMILY SSF49899 1313 1526 9.29E-35 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily RAM_37780 600a1b6fbdaecddc54e8a7ee3fc96b20 1697 Gene3D G3DSA:3.40.50.1110 1536 1677 2.4E-5 T 13-10-2018 IPR036514 SGNH hydrolase superfamily RAM_37780 600a1b6fbdaecddc54e8a7ee3fc96b20 1697 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 1359 1520 2.7E-28 T 13-10-2018 RAM_37780 600a1b6fbdaecddc54e8a7ee3fc96b20 1697 SMART SM00560 1376 1517 2.8E-15 T 13-10-2018 IPR006558 LamG-like jellyroll fold RAM_37780 600a1b6fbdaecddc54e8a7ee3fc96b20 1697 Gene3D G3DSA:2.60.120.200 1318 1525 1.6E-33 T 13-10-2018 RAM_37780 600a1b6fbdaecddc54e8a7ee3fc96b20 1697 SUPERFAMILY SSF52266 1537 1688 1.05E-6 T 13-10-2018 RAM_17250 b9532fe5950f306e74db975b02530d72 140 Gene3D G3DSA:3.10.180.10 5 138 1.5E-36 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_17250 b9532fe5950f306e74db975b02530d72 140 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 9 128 6.9E-8 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RAM_17250 b9532fe5950f306e74db975b02530d72 140 SUPERFAMILY SSF54593 1 130 1.48E-25 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_09685 70feb3d2e4a8860f3b14864987f7cf6b 166 SUPERFAMILY SSF55729 3 163 4.15E-35 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_09685 70feb3d2e4a8860f3b14864987f7cf6b 166 Gene3D G3DSA:3.40.630.30 1 166 3.1E-38 T 13-10-2018 RAM_09685 70feb3d2e4a8860f3b14864987f7cf6b 166 Pfam PF13302 Acetyltransferase (GNAT) domain 8 136 2.4E-17 T 13-10-2018 IPR000182 GNAT domain RAM_07005 0f65b9b700af33cdd768526cb216efc5 437 Gene3D G3DSA:3.40.50.2300 165 305 4.6E-69 T 13-10-2018 RAM_07005 0f65b9b700af33cdd768526cb216efc5 437 Gene3D G3DSA:3.40.50.2300 52 368 4.6E-69 T 13-10-2018 RAM_07005 0f65b9b700af33cdd768526cb216efc5 437 SUPERFAMILY SSF53822 45 401 5.89E-60 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_07005 0f65b9b700af33cdd768526cb216efc5 437 Pfam PF13458 Periplasmic binding protein 45 400 3.8E-58 T 13-10-2018 IPR028081 Leucine-binding protein domain RAM_35580 e6cb3bc75e9bf5a900b4a6e02afe12c0 254 SUPERFAMILY SSF69593 35 246 5.62E-40 T 13-10-2018 RAM_35580 e6cb3bc75e9bf5a900b4a6e02afe12c0 254 SMART SM00563 67 185 7.0E-31 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 RAM_35580 e6cb3bc75e9bf5a900b4a6e02afe12c0 254 Pfam PF01553 Acyltransferase 53 181 2.4E-23 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 RAM_42365 bd5d61e47c54bed178dca9f2ca047a87 475 Pfam PF06737 Transglycosylase-like domain 396 471 2.8E-32 T 13-10-2018 IPR010618 Transglycosylase-like RAM_42365 bd5d61e47c54bed178dca9f2ca047a87 475 SMART SM01208 309 387 9.8E-28 T 13-10-2018 IPR011098 G5 domain RAM_42365 bd5d61e47c54bed178dca9f2ca047a87 475 Pfam PF03990 Domain of unknown function (DUF348) 138 177 7.3E-14 T 13-10-2018 IPR007137 Resuscitation-promoting factor, domain of unknown function DUF348 RAM_42365 bd5d61e47c54bed178dca9f2ca047a87 475 SUPERFAMILY SSF53955 394 474 1.18E-29 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily RAM_42365 bd5d61e47c54bed178dca9f2ca047a87 475 Pfam PF07501 G5 domain 313 386 1.6E-22 T 13-10-2018 IPR011098 G5 domain RAM_42365 bd5d61e47c54bed178dca9f2ca047a87 475 Gene3D G3DSA:2.20.230.10 307 393 7.6E-25 T 13-10-2018 RAM_42365 bd5d61e47c54bed178dca9f2ca047a87 475 Gene3D G3DSA:1.10.530.10 396 475 2.6E-33 T 13-10-2018 RAM_36995 77bcf08c146d24c0b9d3e2db8c43e914 327 Gene3D G3DSA:3.20.20.30 4 302 1.6E-46 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_36995 77bcf08c146d24c0b9d3e2db8c43e914 327 Pfam PF00296 Luciferase-like monooxygenase 12 292 8.7E-34 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_36995 77bcf08c146d24c0b9d3e2db8c43e914 327 SUPERFAMILY SSF51679 1 300 8.1E-39 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_24850 adc3aae1c119204e092a36c6712cc491 102 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 2 79 20.142 T 13-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 RAM_24850 adc3aae1c119204e092a36c6712cc491 102 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 4 48 1.6E-18 T 13-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 RAM_24850 adc3aae1c119204e092a36c6712cc491 102 Pfam PF02416 mttA/Hcf106 family 7 56 2.1E-18 T 13-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 RAM_25795 46519ac29b6a694ec7a8d5133141e391 396 Gene3D G3DSA:3.30.420.40 79 210 1.5E-27 T 13-10-2018 RAM_25795 46519ac29b6a694ec7a8d5133141e391 396 SUPERFAMILY SSF46785 11 67 4.32E-10 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_25795 46519ac29b6a694ec7a8d5133141e391 396 SUPERFAMILY SSF53067 84 383 1.95E-41 T 13-10-2018 RAM_25795 46519ac29b6a694ec7a8d5133141e391 396 Gene3D G3DSA:1.10.10.10 6 71 4.6E-14 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_25795 46519ac29b6a694ec7a8d5133141e391 396 Pfam PF00480 ROK family 85 366 3.1E-31 T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 RAM_25795 46519ac29b6a694ec7a8d5133141e391 396 Gene3D G3DSA:3.30.420.40 211 364 9.2E-30 T 13-10-2018 RAM_25795 46519ac29b6a694ec7a8d5133141e391 396 Pfam PF12802 MarR family 24 66 8.9E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_24175 eb0844efb9b45d8cedee4295fd7b1d55 168 Gene3D G3DSA:3.40.50.280 27 165 2.8E-24 T 13-10-2018 RAM_24175 eb0844efb9b45d8cedee4295fd7b1d55 168 Pfam PF02310 B12 binding domain 33 146 1.1E-14 T 13-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 RAM_24175 eb0844efb9b45d8cedee4295fd7b1d55 168 SUPERFAMILY SSF52242 31 155 2.22E-19 T 13-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 RAM_16730 82aaea38a1dcd2b074278a70eb2cd507 243 Pfam PF01670 Glycosyl hydrolase family 12 39 243 4.3E-59 T 13-10-2018 IPR002594 Glycoside hydrolase family 12 GO:0000272|GO:0008810 RAM_16730 82aaea38a1dcd2b074278a70eb2cd507 243 SUPERFAMILY SSF49899 27 243 9.27E-69 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily RAM_16730 82aaea38a1dcd2b074278a70eb2cd507 243 Gene3D G3DSA:2.60.120.180 24 243 7.1E-82 T 13-10-2018 IPR013319 Glycoside hydrolase family 11/12 GO:0004553 MetaCyc: PWY-6717|MetaCyc: PWY-6784 RAM_02665 a3a4129097a99687f7267b1984f6812f 139 Gene3D G3DSA:1.20.58.1610 12 139 1.5E-36 T 13-10-2018 IPR038430 NADH:ubiquinone oxidoreductase, subunit 3 superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_02665 a3a4129097a99687f7267b1984f6812f 139 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 19 139 17.077 T 13-10-2018 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 RAM_02665 a3a4129097a99687f7267b1984f6812f 139 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 38 138 5.8E-31 T 13-10-2018 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_38095 bb27d76704be2f57ee52ff8d6ee782bd 607 SUPERFAMILY SSF69318 141 569 1.96E-14 T 13-10-2018 RAM_38095 bb27d76704be2f57ee52ff8d6ee782bd 607 Gene3D G3DSA:2.60.40.10 30 117 6.1E-23 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_06020 c538a935af15be80a690e9d58b262c3f 984 SUPERFAMILY SSF52540 461 822 6.64E-12 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_06020 c538a935af15be80a690e9d58b262c3f 984 Pfam PF12846 AAA-like domain 485 826 5.1E-23 T 13-10-2018 RAM_35850 c9b7323fd81d350123817d8d0a37e71f 491 Gene3D G3DSA:3.50.50.60 308 487 2.4E-29 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_35850 c9b7323fd81d350123817d8d0a37e71f 491 SUPERFAMILY SSF51905 276 460 2.01E-13 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_35850 c9b7323fd81d350123817d8d0a37e71f 491 Gene3D G3DSA:3.50.50.60 1 169 1.8E-51 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_35850 c9b7323fd81d350123817d8d0a37e71f 491 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 172 190 5.8E-6 T 13-10-2018 RAM_35850 c9b7323fd81d350123817d8d0a37e71f 491 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 5.8E-6 T 13-10-2018 RAM_35850 c9b7323fd81d350123817d8d0a37e71f 491 SUPERFAMILY SSF51905 6 221 3.46E-53 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_35850 c9b7323fd81d350123817d8d0a37e71f 491 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 7 29 6.3E-5 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAM_35850 c9b7323fd81d350123817d8d0a37e71f 491 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 168 192 6.3E-5 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAM_35850 c9b7323fd81d350123817d8d0a37e71f 491 Pfam PF13738 Pyridine nucleotide-disulphide oxidoreductase 9 206 1.5E-15 T 13-10-2018 RAM_28985 66bcc9f9ec15f966fdd854af9dd84b2f 211 Gene3D G3DSA:1.10.357.10 8 200 2.4E-47 T 13-10-2018 RAM_28985 66bcc9f9ec15f966fdd854af9dd84b2f 211 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 40 63 6.1E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_28985 66bcc9f9ec15f966fdd854af9dd84b2f 211 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 20 33 6.1E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_28985 66bcc9f9ec15f966fdd854af9dd84b2f 211 SUPERFAMILY SSF48498 86 193 1.63E-12 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_28985 66bcc9f9ec15f966fdd854af9dd84b2f 211 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 65 8.9E-12 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_28985 66bcc9f9ec15f966fdd854af9dd84b2f 211 SUPERFAMILY SSF46689 8 89 9.98E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_44925 8cdbe209589001ef4d1dbd8dc791ec1f 812 Gene3D G3DSA:3.40.710.10 589 805 7.7E-58 T 13-10-2018 RAM_44925 8cdbe209589001ef4d1dbd8dc791ec1f 812 TIGRFAM TIGR00666 PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 612 789 2.1E-41 T 13-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RAM_44925 8cdbe209589001ef4d1dbd8dc791ec1f 812 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 428 598 6.5E-29 T 13-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RAM_44925 8cdbe209589001ef4d1dbd8dc791ec1f 812 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 611 806 8.2E-50 T 13-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RAM_44925 8cdbe209589001ef4d1dbd8dc791ec1f 812 Gene3D G3DSA:3.40.710.10 421 493 3.1E-7 T 13-10-2018 RAM_44925 8cdbe209589001ef4d1dbd8dc791ec1f 812 SUPERFAMILY SSF56601 434 810 3.02E-52 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_44925 8cdbe209589001ef4d1dbd8dc791ec1f 812 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 693 707 1.7E-21 T 13-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RAM_44925 8cdbe209589001ef4d1dbd8dc791ec1f 812 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 621 643 1.7E-21 T 13-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RAM_44925 8cdbe209589001ef4d1dbd8dc791ec1f 812 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 678 692 1.7E-21 T 13-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RAM_44925 8cdbe209589001ef4d1dbd8dc791ec1f 812 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 459 478 1.7E-21 T 13-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RAM_31420 62c54f467c14a9b8a6f45557b86a5400 306 Pfam PF00583 Acetyltransferase (GNAT) family 184 290 2.0E-8 T 13-10-2018 IPR000182 GNAT domain RAM_31420 62c54f467c14a9b8a6f45557b86a5400 306 SUPERFAMILY SSF55729 85 295 3.16E-22 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_31420 62c54f467c14a9b8a6f45557b86a5400 306 Gene3D G3DSA:3.40.630.30 139 297 1.1E-19 T 13-10-2018 RAM_00160 f76b1216b515bfa8ed45f373e9d2a39c 166 SUPERFAMILY SSF55724 33 166 4.97E-51 T 13-10-2018 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich RAM_00160 f76b1216b515bfa8ed45f373e9d2a39c 166 Pfam PF09449 Domain of unknown function (DUF2020) 38 166 8.2E-43 T 13-10-2018 IPR018567 Domain of unknown function DUF2020 RAM_00160 f76b1216b515bfa8ed45f373e9d2a39c 166 Gene3D G3DSA:3.40.1000.10 19 166 3.8E-53 T 13-10-2018 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich RAM_47415 f5a20af4e1a705ca740812277722e8ac 539 Pfam PF08386 TAP-like protein 431 525 5.0E-20 T 13-10-2018 IPR013595 Peptidase S33 tripeptidyl aminopeptidase-like, C-terminal RAM_47415 f5a20af4e1a705ca740812277722e8ac 539 Pfam PF00561 alpha/beta hydrolase fold 109 284 1.1E-18 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_47415 f5a20af4e1a705ca740812277722e8ac 539 SUPERFAMILY SSF53474 95 502 9.54E-21 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_36225 753a1f59adcfb4252f613a1f9b082932 1017 Gene3D G3DSA:2.60.120.610 8 179 1.3E-34 T 13-10-2018 IPR027451 Arabinofuranosyltransferase, domain 1 RAM_36225 753a1f59adcfb4252f613a1f9b082932 1017 Gene3D G3DSA:3.40.190.160 869 983 1.5E-23 T 13-10-2018 RAM_36225 753a1f59adcfb4252f613a1f9b082932 1017 Pfam PF14896 EmbC C-terminal domain 749 1005 1.2E-50 T 13-10-2018 IPR032731 Arabinosyltransferase, C-terminal RAM_36225 753a1f59adcfb4252f613a1f9b082932 1017 Pfam PF14896 EmbC C-terminal domain 667 718 4.7E-7 T 13-10-2018 IPR032731 Arabinosyltransferase, C-terminal RAM_36225 753a1f59adcfb4252f613a1f9b082932 1017 Pfam PF04602 Mycobacterial cell wall arabinan synthesis protein 1 628 8.6E-224 T 13-10-2018 IPR007680 Arabinofuranosyltransferase, N-terminal GO:0052636|GO:0071766 RAM_33610 bae79d1f14fbe8d690846e3181512418 146 Pfam PF02566 OsmC-like protein 38 121 8.5E-9 T 13-10-2018 IPR003718 OsmC/Ohr family RAM_33610 bae79d1f14fbe8d690846e3181512418 146 Gene3D G3DSA:3.30.300.20 1 125 8.4E-17 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta RAM_33610 bae79d1f14fbe8d690846e3181512418 146 SUPERFAMILY SSF82784 4 121 1.96E-16 T 13-10-2018 IPR036102 OsmC/Ohr superfamily RAM_18940 1b6cd4aebd7d0366194f3d993ebadc5b 75 Gene3D G3DSA:3.30.390.50 2 72 5.7E-15 T 13-10-2018 RAM_18940 1b6cd4aebd7d0366194f3d993ebadc5b 75 SUPERFAMILY SSF55447 1 71 1.57E-14 T 13-10-2018 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily RAM_18940 1b6cd4aebd7d0366194f3d993ebadc5b 75 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 2 64 1.5E-8 T 13-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal RAM_45235 1c80dc9990844b7a7189921ca0ca3706 200 Gene3D G3DSA:3.40.630.30 2 197 6.9E-51 T 13-10-2018 RAM_45235 1c80dc9990844b7a7189921ca0ca3706 200 SUPERFAMILY SSF55729 5 177 6.93E-40 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_45235 1c80dc9990844b7a7189921ca0ca3706 200 Pfam PF13302 Acetyltransferase (GNAT) domain 15 150 1.7E-17 T 13-10-2018 IPR000182 GNAT domain RAM_00570 4c5fabda0aca789e91b0ae72766c0a09 359 Gene3D G3DSA:3.30.565.10 237 355 1.1E-30 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_00570 4c5fabda0aca789e91b0ae72766c0a09 359 Pfam PF07730 Histidine kinase 164 229 1.4E-18 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_00570 4c5fabda0aca789e91b0ae72766c0a09 359 SUPERFAMILY SSF55874 246 355 2.29E-13 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_04045 1f74db8422a97947bc81c3ae5f64469f 539 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 136 148 - T 13-10-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 RAM_04045 1f74db8422a97947bc81c3ae5f64469f 539 Gene3D G3DSA:1.10.510.10 92 273 2.6E-44 T 13-10-2018 RAM_04045 1f74db8422a97947bc81c3ae5f64469f 539 Gene3D G3DSA:3.30.200.20 2 91 6.0E-27 T 13-10-2018 RAM_04045 1f74db8422a97947bc81c3ae5f64469f 539 SUPERFAMILY SSF56112 8 523 7.32E-72 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_04045 1f74db8422a97947bc81c3ae5f64469f 539 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 18 41 - T 13-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 RAM_04045 1f74db8422a97947bc81c3ae5f64469f 539 SMART SM00220 12 270 2.6E-60 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_04045 1f74db8422a97947bc81c3ae5f64469f 539 Pfam PF00069 Protein kinase domain 12 264 1.9E-46 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_01145 547307441645398f18878995dfb69b10 316 Pfam PF01040 UbiA prenyltransferase family 57 281 1.9E-17 T 13-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 RAM_01145 547307441645398f18878995dfb69b10 316 Gene3D G3DSA:1.10.357.140 43 185 2.3E-9 T 13-10-2018 RAM_01380 e49a35a8ae3272ee89e8ecda5fdaf3b6 209 SUPERFAMILY SSF53474 5 208 2.82E-25 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_01380 e49a35a8ae3272ee89e8ecda5fdaf3b6 209 Gene3D G3DSA:3.40.50.1820 3 206 4.3E-31 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_01380 e49a35a8ae3272ee89e8ecda5fdaf3b6 209 Pfam PF01738 Dienelactone hydrolase family 71 207 1.9E-16 T 13-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 RAM_13000 2d20c181aa403db0d3515a5fb155b3fe 262 Gene3D G3DSA:3.90.226.10 3 204 1.5E-71 T 13-10-2018 RAM_13000 2d20c181aa403db0d3515a5fb155b3fe 262 Gene3D G3DSA:1.10.12.10 205 262 4.0E-27 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal RAM_13000 2d20c181aa403db0d3515a5fb155b3fe 262 SUPERFAMILY SSF52096 5 262 2.41E-76 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_13000 2d20c181aa403db0d3515a5fb155b3fe 262 Pfam PF00378 Enoyl-CoA hydratase/isomerase 13 261 2.5E-54 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RAM_43400 d28f2bbd7a4d1253d9de6b9fcab50387 273 SUPERFAMILY SSF52540 1 219 2.05E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_43400 d28f2bbd7a4d1253d9de6b9fcab50387 273 Pfam PF00005 ABC transporter 16 152 3.5E-26 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_43400 d28f2bbd7a4d1253d9de6b9fcab50387 273 ProSitePatterns PS00211 ABC transporters family signature. 125 139 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_43400 d28f2bbd7a4d1253d9de6b9fcab50387 273 Gene3D G3DSA:3.40.50.300 1 227 1.3E-60 T 13-10-2018 RAM_43400 d28f2bbd7a4d1253d9de6b9fcab50387 273 SMART SM00382 23 201 8.1E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_23385 5e35d4eb680c678fe99230aeb11dff17 333 Pfam PF01145 SPFH domain / Band 7 family 24 198 6.3E-11 T 13-10-2018 IPR001107 Band 7 domain RAM_42130 b38ac7639773cdc29ec633173b945a23 251 Gene3D G3DSA:1.10.530.10 90 249 2.0E-8 T 13-10-2018 RAM_42130 b38ac7639773cdc29ec633173b945a23 251 SUPERFAMILY SSF53955 57 246 1.41E-30 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily RAM_47225 bfa76af1be0ce915e61f7dfc18eed095 315 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 89 289 1.6E-20 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_47225 bfa76af1be0ce915e61f7dfc18eed095 315 Gene3D G3DSA:1.10.3720.10 65 294 2.8E-56 T 13-10-2018 IPR035906 MetI-like superfamily RAM_47225 bfa76af1be0ce915e61f7dfc18eed095 315 SUPERFAMILY SSF161098 68 274 2.75E-45 T 13-10-2018 IPR035906 MetI-like superfamily RAM_47225 bfa76af1be0ce915e61f7dfc18eed095 315 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 70 183 1.4E-17 T 13-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 RAM_38055 5379f3f602a40cc8604a757a7f279b73 276 Gene3D G3DSA:3.90.550.10 24 272 6.4E-44 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_38055 5379f3f602a40cc8604a757a7f279b73 276 SUPERFAMILY SSF53448 32 254 3.18E-32 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_38055 5379f3f602a40cc8604a757a7f279b73 276 Pfam PF00535 Glycosyl transferase family 2 32 164 4.6E-25 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RAM_25105 20b98226fdb5c67738f817e93e4a0bfb 423 Gene3D G3DSA:2.30.40.10 8 58 1.5E-5 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_25105 20b98226fdb5c67738f817e93e4a0bfb 423 Pfam PF01979 Amidohydrolase family 54 383 9.0E-17 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RAM_25105 20b98226fdb5c67738f817e93e4a0bfb 423 Gene3D G3DSA:3.20.20.140 65 347 1.0E-55 T 13-10-2018 RAM_25105 20b98226fdb5c67738f817e93e4a0bfb 423 SUPERFAMILY SSF51556 57 348 3.56E-46 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_25105 20b98226fdb5c67738f817e93e4a0bfb 423 SUPERFAMILY SSF51338 5 384 1.32E-13 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_12240 48c4d117ba5356d99a20dfe87d15e87a 516 Pfam PF13598 Domain of unknown function (DUF4139) 200 506 2.8E-53 T 13-10-2018 IPR037291 Domain of unknown function DUF4139 RAM_12240 48c4d117ba5356d99a20dfe87d15e87a 516 TIGRFAM TIGR02231 TIGR02231: conserved hypothetical protein 8 511 3.8E-96 T 13-10-2018 IPR011935 Conserved hypothetical protein CHP02231 RAM_12240 48c4d117ba5356d99a20dfe87d15e87a 516 Pfam PF13600 N-terminal domain of unknown function (DUF4140) 11 101 4.0E-18 T 13-10-2018 IPR025554 Domain of unknown function DUF4140 RAM_46445 2386b3eb9c99206991898fceac9c8a8c 252 ProSitePatterns PS00383 Tyrosine specific protein phosphatases active site. 149 159 - T 13-10-2018 IPR016130 Protein-tyrosine phosphatase, active site GO:0004725|GO:0016311 RAM_46445 2386b3eb9c99206991898fceac9c8a8c 252 Pfam PF13350 Tyrosine phosphatase family 2 249 4.6E-45 T 13-10-2018 IPR026893 Tyrosine/serine-protein phosphatase IphP-type RAM_46445 2386b3eb9c99206991898fceac9c8a8c 252 Gene3D G3DSA:3.90.190.10 2 249 6.4E-42 T 13-10-2018 IPR029021 Protein-tyrosine phosphatase-like RAM_46445 2386b3eb9c99206991898fceac9c8a8c 252 SUPERFAMILY SSF52799 1 248 1.94E-32 T 13-10-2018 IPR029021 Protein-tyrosine phosphatase-like RAM_13280 288e2b7afe312ce07fa4df3c1a59bea4 678 Gene3D G3DSA:1.20.1740.10 49 497 1.7E-19 T 13-10-2018 RAM_13280 288e2b7afe312ce07fa4df3c1a59bea4 678 Pfam PF13520 Amino acid permease 52 465 1.8E-24 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RAM_43505 b426b469603d5e5a1d2b32c43baa5bd8 198 SUPERFAMILY SSF46689 11 83 1.08E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_43505 b426b469603d5e5a1d2b32c43baa5bd8 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 24 65 3.7E-12 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_43505 b426b469603d5e5a1d2b32c43baa5bd8 198 Gene3D G3DSA:1.10.357.10 10 198 1.0E-31 T 13-10-2018 RAM_43505 b426b469603d5e5a1d2b32c43baa5bd8 198 SUPERFAMILY SSF48498 86 194 9.3E-9 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_43505 b426b469603d5e5a1d2b32c43baa5bd8 198 ProSitePatterns PS01081 TetR-type HTH domain signature. 32 63 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RAM_43505 b426b469603d5e5a1d2b32c43baa5bd8 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 41 64 4.4E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_43505 b426b469603d5e5a1d2b32c43baa5bd8 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 20 33 4.4E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_31895 c8b002be5ea54818059bedf4ffb45067 371 Gene3D G3DSA:3.40.50.1820 2 371 2.2E-119 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_31895 c8b002be5ea54818059bedf4ffb45067 371 PRINTS PR00412 Epoxide hydrolase signature 313 329 1.7E-11 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_31895 c8b002be5ea54818059bedf4ffb45067 371 PRINTS PR00412 Epoxide hydrolase signature 122 137 1.7E-11 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_31895 c8b002be5ea54818059bedf4ffb45067 371 PRINTS PR00412 Epoxide hydrolase signature 344 366 1.7E-11 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_31895 c8b002be5ea54818059bedf4ffb45067 371 PRINTS PR00412 Epoxide hydrolase signature 181 194 1.7E-11 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_31895 c8b002be5ea54818059bedf4ffb45067 371 PRINTS PR00412 Epoxide hydrolase signature 93 111 1.7E-11 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_31895 c8b002be5ea54818059bedf4ffb45067 371 SUPERFAMILY SSF53474 3 369 1.17E-86 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_31895 c8b002be5ea54818059bedf4ffb45067 371 PIRSF PIRSF001112 1 371 2.3E-98 T 13-10-2018 IPR016292 Epoxide hydrolase GO:0033961 Reactome: R-HSA-211945 RAM_31895 c8b002be5ea54818059bedf4ffb45067 371 Pfam PF06441 Epoxide hydrolase N terminus 3 102 5.3E-26 T 13-10-2018 IPR010497 Epoxide hydrolase, N-terminal Reactome: R-HSA-211945 RAM_47245 7e348bf9b42c27f3328b929fdd116455 280 Pfam PF01841 Transglutaminase-like superfamily 131 233 1.1E-25 T 13-10-2018 IPR002931 Transglutaminase-like RAM_47245 7e348bf9b42c27f3328b929fdd116455 280 Gene3D G3DSA:3.10.620.30 74 272 1.7E-50 T 13-10-2018 RAM_47245 7e348bf9b42c27f3328b929fdd116455 280 Pfam PF08379 Bacterial transglutaminase-like N-terminal region 5 83 8.8E-20 T 13-10-2018 IPR013589 Bacterial transglutaminase-like, N-terminal RAM_47245 7e348bf9b42c27f3328b929fdd116455 280 SUPERFAMILY SSF54001 9 261 4.49E-39 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily RAM_47245 7e348bf9b42c27f3328b929fdd116455 280 SMART SM00460 168 235 1.4E-19 T 13-10-2018 IPR002931 Transglutaminase-like RAM_27130 b7dc56aa93fd803f48ada7be129f41b8 180 Gene3D G3DSA:3.30.428.10 7 180 2.8E-58 T 13-10-2018 IPR036265 HIT-like superfamily RAM_27130 b7dc56aa93fd803f48ada7be129f41b8 180 Pfam PF01230 HIT domain 60 148 8.8E-13 T 13-10-2018 IPR001310 Histidine triad (HIT) protein RAM_27130 b7dc56aa93fd803f48ada7be129f41b8 180 SUPERFAMILY SSF54197 20 171 7.89E-43 T 13-10-2018 IPR036265 HIT-like superfamily RAM_10395 53079cb8c269e370ff865de1369e847f 321 TIGRFAM TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein 12 307 9.5E-106 T 13-10-2018 IPR005894 Daunorubicin resistance ABC transporter ATP-binding subunit DrrA GO:0005524|GO:0043215|GO:1900753 RAM_10395 53079cb8c269e370ff865de1369e847f 321 SMART SM00382 29 212 5.1E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_10395 53079cb8c269e370ff865de1369e847f 321 SUPERFAMILY SSF52540 5 224 2.56E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_10395 53079cb8c269e370ff865de1369e847f 321 Gene3D G3DSA:3.40.50.300 1 233 1.3E-65 T 13-10-2018 RAM_10395 53079cb8c269e370ff865de1369e847f 321 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_10395 53079cb8c269e370ff865de1369e847f 321 Pfam PF00005 ABC transporter 20 163 2.1E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_10395 53079cb8c269e370ff865de1369e847f 321 Pfam PF13732 Domain of unknown function (DUF4162) 217 305 2.2E-6 T 13-10-2018 IPR025302 Domain of unknown function DUF4162 RAM_03990 a03e95f641a95e70da8c5f8c63a388de 181 SUPERFAMILY SSF109854 7 44 5.95E-5 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_03990 a03e95f641a95e70da8c5f8c63a388de 181 SUPERFAMILY SSF109854 67 178 9.31E-15 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_03990 a03e95f641a95e70da8c5f8c63a388de 181 Pfam PF12867 DinB superfamily 12 170 6.7E-18 T 13-10-2018 IPR024775 DinB-like domain RAM_27710 e4c2fb3253df2fddfe9a377dc1c8d22f 139 PIRSF PIRSF016602 1 137 2.5E-49 T 13-10-2018 IPR016672 Polyketide biosynthesis protein CurC, predicted RAM_27710 e4c2fb3253df2fddfe9a377dc1c8d22f 139 Gene3D G3DSA:2.60.120.10 3 109 1.2E-19 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_27710 e4c2fb3253df2fddfe9a377dc1c8d22f 139 SUPERFAMILY SSF51182 18 130 1.06E-26 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RAM_27710 e4c2fb3253df2fddfe9a377dc1c8d22f 139 Pfam PF07883 Cupin domain 40 106 2.7E-18 T 13-10-2018 IPR013096 Cupin 2, conserved barrel RAM_16615 ce0987761f3b51da5fd5a707c47d47e1 288 Gene3D G3DSA:3.20.20.140 6 286 2.0E-62 T 13-10-2018 RAM_16615 ce0987761f3b51da5fd5a707c47d47e1 288 Pfam PF04909 Amidohydrolase 9 287 1.5E-60 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RAM_16615 ce0987761f3b51da5fd5a707c47d47e1 288 SUPERFAMILY SSF51556 9 287 4.64E-65 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_33525 7296ba902bf330662121f9cbda26730d 187 Pfam PF04234 CopC domain 27 119 6.1E-21 T 13-10-2018 IPR007348 CopC domain GO:0005507|GO:0042597|GO:0046688 RAM_33525 7296ba902bf330662121f9cbda26730d 187 Gene3D G3DSA:2.60.40.1220 27 125 3.6E-20 T 13-10-2018 RAM_33525 7296ba902bf330662121f9cbda26730d 187 SUPERFAMILY SSF81296 26 120 4.9E-20 T 13-10-2018 IPR014756 Immunoglobulin E-set RAM_19290 d2b2933d115477068762fab5b03ea242 90 Pfam PF01455 HupF/HypC family 1 70 7.2E-26 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC RAM_19290 d2b2933d115477068762fab5b03ea242 90 TIGRFAM TIGR00074 hypC_hupF: hydrogenase assembly chaperone HypC/HupF 1 82 1.4E-25 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC RAM_19290 d2b2933d115477068762fab5b03ea242 90 Gene3D G3DSA:2.40.50.970 1 84 1.3E-25 T 13-10-2018 IPR037254 HupF/HypC superfamily RAM_19290 d2b2933d115477068762fab5b03ea242 90 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 20 36 2.9E-20 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC RAM_19290 d2b2933d115477068762fab5b03ea242 90 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 61 73 2.9E-20 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC RAM_19290 d2b2933d115477068762fab5b03ea242 90 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 2 9 2.9E-20 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC RAM_19290 d2b2933d115477068762fab5b03ea242 90 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 43 59 2.9E-20 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC RAM_19290 d2b2933d115477068762fab5b03ea242 90 SUPERFAMILY SSF159127 1 80 9.94E-23 T 13-10-2018 IPR037254 HupF/HypC superfamily RAM_32055 3c950b9da78ff62c2d7489f172c0f09a 279 Pfam PF08478 POTRA domain, FtsQ-type 86 152 1.7E-18 T 13-10-2018 IPR013685 POTRA domain, FtsQ-type RAM_32055 3c950b9da78ff62c2d7489f172c0f09a 279 Pfam PF03799 Cell division protein FtsQ 166 263 7.3E-9 T 13-10-2018 IPR005548 Cell division protein FtsQ/DivIB RAM_32055 3c950b9da78ff62c2d7489f172c0f09a 279 Gene3D G3DSA:3.10.20.310 84 151 2.0E-7 T 13-10-2018 RAM_24680 e5ecce017b85b1c938639e8a8a765949 496 Gene3D G3DSA:2.160.20.10 49 170 3.8E-11 T 13-10-2018 IPR012334 Pectin lyase fold RAM_24680 e5ecce017b85b1c938639e8a8a765949 496 Gene3D G3DSA:2.160.20.10 171 316 7.2E-16 T 13-10-2018 IPR012334 Pectin lyase fold RAM_24680 e5ecce017b85b1c938639e8a8a765949 496 SUPERFAMILY SSF51126 43 341 3.69E-27 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor RAM_24680 e5ecce017b85b1c938639e8a8a765949 496 SMART SM00710 255 276 7200.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_24680 e5ecce017b85b1c938639e8a8a765949 496 SMART SM00710 120 145 4100.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_24680 e5ecce017b85b1c938639e8a8a765949 496 SMART SM00710 278 315 4200.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_24680 e5ecce017b85b1c938639e8a8a765949 496 SMART SM00710 231 253 80.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_24680 e5ecce017b85b1c938639e8a8a765949 496 SMART SM00710 326 347 620.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_24680 e5ecce017b85b1c938639e8a8a765949 496 SMART SM00710 147 169 14.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_24680 e5ecce017b85b1c938639e8a8a765949 496 SMART SM00710 195 230 2600.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_24680 e5ecce017b85b1c938639e8a8a765949 496 Pfam PF13229 Right handed beta helix region 145 306 3.4E-15 T 13-10-2018 IPR039448 Right handed beta helix domain RAM_40285 2ad05cf272e7f6738cc6252b70c6a804 91 Pfam PF02325 YGGT family 10 88 3.9E-13 T 13-10-2018 IPR003425 CCB3/YggT GO:0016020 RAM_17865 440dfa4f841f91224a14adce74e0e181 196 Gene3D G3DSA:1.20.1260.10 23 195 1.8E-59 T 13-10-2018 IPR012347 Ferritin-like RAM_17865 440dfa4f841f91224a14adce74e0e181 196 Pfam PF03713 Domain of unknown function (DUF305) 46 193 1.8E-54 T 13-10-2018 IPR005183 Domain of unknown function DUF305 RAM_21410 0a690f1e55f8be5232e3f126bfe66af9 340 Pfam PF00756 Putative esterase 31 291 3.1E-20 T 13-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 RAM_21410 0a690f1e55f8be5232e3f126bfe66af9 340 SUPERFAMILY SSF53474 6 338 2.16E-34 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_14080 189615acf48e5baf626e974570c39f6d 399 SUPERFAMILY SSF55874 281 383 1.55E-7 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_14080 189615acf48e5baf626e974570c39f6d 399 Gene3D G3DSA:3.30.565.10 273 396 2.4E-26 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_14080 189615acf48e5baf626e974570c39f6d 399 Pfam PF07730 Histidine kinase 203 267 8.6E-16 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_36830 b579f9e1fe091b6bdd2e6824968d2789 336 SUPERFAMILY SSF56112 33 292 6.98E-38 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_36830 b579f9e1fe091b6bdd2e6824968d2789 336 Gene3D G3DSA:3.30.200.20 18 102 4.3E-7 T 13-10-2018 RAM_36830 b579f9e1fe091b6bdd2e6824968d2789 336 Gene3D G3DSA:3.90.1200.10 117 327 6.4E-30 T 13-10-2018 RAM_36830 b579f9e1fe091b6bdd2e6824968d2789 336 Pfam PF01636 Phosphotransferase enzyme family 35 256 1.5E-30 T 13-10-2018 IPR002575 Aminoglycoside phosphotransferase RAM_01260 e0c1f2e44cb3028f151aa809c6e736ff 93 Pfam PF10041 Uncharacterized conserved protein (DUF2277) 1 84 2.3E-33 T 13-10-2018 IPR018735 Protein of unknown function DUF2277 RAM_18915 7ca118f019168e2ef469ef2b50c58c95 135 Gene3D G3DSA:2.60.120.10 5 131 3.7E-43 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_18915 7ca118f019168e2ef469ef2b50c58c95 135 SUPERFAMILY SSF51182 9 132 1.89E-29 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RAM_18915 7ca118f019168e2ef469ef2b50c58c95 135 Pfam PF07883 Cupin domain 39 97 5.0E-13 T 13-10-2018 IPR013096 Cupin 2, conserved barrel RAM_38480 72a1dda66bcd0ff274b962cff3430236 308 Gene3D G3DSA:1.10.3720.10 66 307 2.0E-56 T 13-10-2018 IPR035906 MetI-like superfamily RAM_38480 72a1dda66bcd0ff274b962cff3430236 308 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 103 298 6.7E-13 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_38480 72a1dda66bcd0ff274b962cff3430236 308 SUPERFAMILY SSF161098 71 297 7.33E-50 T 13-10-2018 IPR035906 MetI-like superfamily RAM_23145 9681e20c06a21c0b3980419a2f637ef3 672 TIGRFAM TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase 5 672 0.0 T 13-10-2018 IPR013454 Bifunctional rhamnulose-1-phosphate aldolase/alcohol dehydrogenase RAM_23145 9681e20c06a21c0b3980419a2f637ef3 672 Gene3D G3DSA:3.40.225.10 5 212 4.5E-48 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily RAM_23145 9681e20c06a21c0b3980419a2f637ef3 672 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 583 600 3.8E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_23145 9681e20c06a21c0b3980419a2f637ef3 672 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 630 650 3.8E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_23145 9681e20c06a21c0b3980419a2f637ef3 672 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 419 436 3.8E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_23145 9681e20c06a21c0b3980419a2f637ef3 672 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 562 581 3.8E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_23145 9681e20c06a21c0b3980419a2f637ef3 672 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 488 499 3.8E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_23145 9681e20c06a21c0b3980419a2f637ef3 672 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 536 552 3.8E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_23145 9681e20c06a21c0b3980419a2f637ef3 672 SUPERFAMILY SSF51735 408 669 1.67E-62 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_23145 9681e20c06a21c0b3980419a2f637ef3 672 SUPERFAMILY SSF53639 6 214 8.04E-29 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily RAM_23145 9681e20c06a21c0b3980419a2f637ef3 672 SMART SM01007 6 208 1.4E-33 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal RAM_23145 9681e20c06a21c0b3980419a2f637ef3 672 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 7 206 5.0E-22 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal RAM_23145 9681e20c06a21c0b3980419a2f637ef3 672 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 424 666 2.6E-47 T 13-10-2018 RAM_23145 9681e20c06a21c0b3980419a2f637ef3 672 Gene3D G3DSA:3.40.50.720 398 669 6.0E-62 T 13-10-2018 RAM_31770 a9e9ecf5349ee1a0270cd42e26b248db 168 Pfam PF06271 RDD family 24 157 3.6E-13 T 13-10-2018 IPR010432 RDD RAM_33860 b50d67ce865831879bbfdf8f2c19d4c2 217 Pfam PF02698 DUF218 domain 50 195 2.9E-21 T 13-10-2018 IPR003848 Domain of unknown function DUF218 RAM_23880 326e8cc3460a2f6f43a3aa4ebe01c67b 105 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 2 17 6.5E-6 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_23880 326e8cc3460a2f6f43a3aa4ebe01c67b 105 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 49 64 6.5E-6 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_23880 326e8cc3460a2f6f43a3aa4ebe01c67b 105 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 34 49 6.5E-6 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_23880 326e8cc3460a2f6f43a3aa4ebe01c67b 105 Gene3D G3DSA:1.10.10.10 1 99 9.7E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_23880 326e8cc3460a2f6f43a3aa4ebe01c67b 105 SUPERFAMILY SSF46785 1 90 4.05E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_23880 326e8cc3460a2f6f43a3aa4ebe01c67b 105 SMART SM00418 1 74 9.7E-12 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_23880 326e8cc3460a2f6f43a3aa4ebe01c67b 105 Pfam PF12840 Helix-turn-helix domain 1 58 1.1E-12 T 13-10-2018 RAM_41845 de0d43a46fa1193ff05c74d4ffff161e 167 Gene3D G3DSA:3.40.30.10 41 161 4.4E-11 T 13-10-2018 RAM_41845 de0d43a46fa1193ff05c74d4ffff161e 167 SUPERFAMILY SSF52833 14 154 1.45E-11 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RAM_47825 b7bd2610b83cee2ac67e40831101ce23 190 Pfam PF12079 Protein of unknown function (DUF3558) 1 185 1.2E-25 T 13-10-2018 IPR024520 Protein of unknown function DUF3558 RAM_03595 e29ace744d0e5032dd3511c8bd7e7950 112 PIRSF PIRSF002134 1 111 4.9E-38 T 13-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_03595 e29ace744d0e5032dd3511c8bd7e7950 112 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 2 101 3.9E-45 T 13-10-2018 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_03595 e29ace744d0e5032dd3511c8bd7e7950 112 Pfam PF00416 Ribosomal protein S13/S18 2 95 8.5E-28 T 13-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_03595 e29ace744d0e5032dd3511c8bd7e7950 112 SUPERFAMILY SSF46946 2 108 4.88E-40 T 13-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 RAM_03595 e29ace744d0e5032dd3511c8bd7e7950 112 Gene3D G3DSA:4.10.910.10 59 112 1.9E-24 T 13-10-2018 IPR027437 30s ribosomal protein S13, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RAM_03595 e29ace744d0e5032dd3511c8bd7e7950 112 Gene3D G3DSA:1.10.8.50 1 58 7.8E-22 T 13-10-2018 RAM_16910 dde761ad3bca85701be0d5f07b1358db 404 SUPERFAMILY SSF103473 6 392 1.7E-27 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_16910 dde761ad3bca85701be0d5f07b1358db 404 Gene3D G3DSA:1.20.1250.20 10 391 1.3E-22 T 13-10-2018 RAM_16910 dde761ad3bca85701be0d5f07b1358db 404 Pfam PF07690 Major Facilitator Superfamily 16 269 6.8E-11 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_43885 4483361e2a84d1ed5fe644794c3098cf 281 Gene3D G3DSA:3.20.20.410 2 141 8.3E-38 T 13-10-2018 IPR036520 UPF0759 superfamily RAM_43885 4483361e2a84d1ed5fe644794c3098cf 281 Gene3D G3DSA:3.20.20.410 142 275 4.3E-29 T 13-10-2018 IPR036520 UPF0759 superfamily RAM_43885 4483361e2a84d1ed5fe644794c3098cf 281 SUPERFAMILY SSF117396 6 274 2.35E-80 T 13-10-2018 IPR036520 UPF0759 superfamily RAM_43885 4483361e2a84d1ed5fe644794c3098cf 281 Pfam PF01904 Protein of unknown function DUF72 24 271 5.2E-68 T 13-10-2018 IPR002763 Protein of unknown function DUF72 RAM_07600 b5c8c1950afcfeeb1cd0d18e64e6ec08 136 SUPERFAMILY SSF50475 13 134 2.68E-28 T 13-10-2018 RAM_07600 b5c8c1950afcfeeb1cd0d18e64e6ec08 136 TIGRFAM TIGR03618 Rv1155_F420: PPOX class probable F420-dependent enzyme 16 134 2.0E-24 T 13-10-2018 IPR019920 F420-binding domain, putative RAM_07600 b5c8c1950afcfeeb1cd0d18e64e6ec08 136 Gene3D G3DSA:2.30.110.10 11 136 7.9E-40 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_07600 b5c8c1950afcfeeb1cd0d18e64e6ec08 136 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 13 100 2.3E-9 T 13-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RAM_11970 43f7fc59172debc639bc740d41e4a072 250 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 7 105 1.2E-27 T 13-10-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_11970 43f7fc59172debc639bc740d41e4a072 250 Gene3D G3DSA:3.10.20.30 2 103 8.6E-28 T 13-10-2018 IPR012675 Beta-grasp domain superfamily RAM_11970 43f7fc59172debc639bc740d41e4a072 250 SUPERFAMILY SSF54292 2 103 5.11E-24 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RAM_11970 43f7fc59172debc639bc740d41e4a072 250 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 14 219 2.5E-43 T 13-10-2018 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 RAM_11970 43f7fc59172debc639bc740d41e4a072 250 SUPERFAMILY SSF46548 124 228 3.31E-18 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 RAM_11970 43f7fc59172debc639bc740d41e4a072 250 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 53 61 - T 13-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RAM_11970 43f7fc59172debc639bc740d41e4a072 250 Pfam PF13183 4Fe-4S dicluster domain 140 216 3.4E-14 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RAM_11970 43f7fc59172debc639bc740d41e4a072 250 Gene3D G3DSA:1.10.1060.10 107 234 1.7E-15 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 RAM_16465 4c33aa4eafe66b62341abfce24c408bf 462 SMART SM00100 90 213 7.5E-6 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain RAM_16465 4c33aa4eafe66b62341abfce24c408bf 462 Pfam PF00027 Cyclic nucleotide-binding domain 110 193 1.7E-12 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain RAM_16465 4c33aa4eafe66b62341abfce24c408bf 462 Gene3D G3DSA:2.60.120.10 84 221 1.9E-19 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_16465 4c33aa4eafe66b62341abfce24c408bf 462 SUPERFAMILY SSF51206 84 200 2.23E-20 T 13-10-2018 IPR018490 Cyclic nucleotide-binding-like RAM_38875 45fed2a341986a34b8e59aca1c6a9303 190 Gene3D G3DSA:1.10.357.10 1 172 1.1E-25 T 13-10-2018 RAM_38875 45fed2a341986a34b8e59aca1c6a9303 190 SUPERFAMILY SSF46689 2 62 5.13E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_38875 45fed2a341986a34b8e59aca1c6a9303 190 SUPERFAMILY SSF48498 63 170 4.45E-13 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_38875 45fed2a341986a34b8e59aca1c6a9303 190 Pfam PF00440 Bacterial regulatory proteins, tetR family 2 40 9.7E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_21895 23c4b790e53fefca63603fb41626612a 128 Gene3D G3DSA:3.30.750.24 36 127 9.5E-17 T 13-10-2018 IPR036513 STAS domain superfamily RAM_21895 23c4b790e53fefca63603fb41626612a 128 Pfam PF13466 STAS domain 45 109 8.2E-11 T 13-10-2018 IPR002645 STAS domain RAM_21895 23c4b790e53fefca63603fb41626612a 128 SUPERFAMILY SSF52091 38 108 1.84E-12 T 13-10-2018 IPR036513 STAS domain superfamily RAM_16255 03c7b6f1330b8ebc9f4d13e9499e874d 276 Gene3D G3DSA:3.30.200.20 3 87 6.7E-15 T 13-10-2018 RAM_16255 03c7b6f1330b8ebc9f4d13e9499e874d 276 Pfam PF00069 Protein kinase domain 52 193 1.3E-17 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_16255 03c7b6f1330b8ebc9f4d13e9499e874d 276 Gene3D G3DSA:1.10.510.10 90 242 1.9E-23 T 13-10-2018 RAM_16255 03c7b6f1330b8ebc9f4d13e9499e874d 276 SUPERFAMILY SSF56112 2 226 2.11E-39 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_24575 5441369e77af587e3a9086bc9c88b5e5 444 Gene3D G3DSA:2.60.40.10 13 87 6.7E-5 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_12645 80130a0c9e9532ab59285d35460063ad 477 SUPERFAMILY SSF103473 9 469 4.84E-64 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_12645 80130a0c9e9532ab59285d35460063ad 477 Gene3D G3DSA:1.20.1720.10 20 264 1.2E-44 T 13-10-2018 RAM_12645 80130a0c9e9532ab59285d35460063ad 477 Gene3D G3DSA:1.20.1250.20 275 476 2.0E-19 T 13-10-2018 RAM_12645 80130a0c9e9532ab59285d35460063ad 477 Pfam PF07690 Major Facilitator Superfamily 26 417 8.8E-54 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_16890 3b87f2d2d433ab7c97f7da24a9b232c4 240 SUPERFAMILY SSF46785 8 80 1.32E-14 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_16890 3b87f2d2d433ab7c97f7da24a9b232c4 240 Gene3D G3DSA:1.10.10.10 2 93 1.5E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_16890 3b87f2d2d433ab7c97f7da24a9b232c4 240 SUPERFAMILY SSF52788 108 230 2.62E-35 T 13-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily RAM_16890 3b87f2d2d433ab7c97f7da24a9b232c4 240 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 110 211 2.8E-19 T 13-10-2018 IPR023485 Phosphotyrosine protein phosphatase I RAM_16890 3b87f2d2d433ab7c97f7da24a9b232c4 240 SMART SM00226 108 231 1.1E-33 T 13-10-2018 IPR023485 Phosphotyrosine protein phosphatase I RAM_16890 3b87f2d2d433ab7c97f7da24a9b232c4 240 SMART SM00418 7 88 3.4E-10 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_16890 3b87f2d2d433ab7c97f7da24a9b232c4 240 Pfam PF01022 Bacterial regulatory protein, arsR family 15 59 1.8E-7 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_16890 3b87f2d2d433ab7c97f7da24a9b232c4 240 Gene3D G3DSA:3.40.50.2300 107 233 1.5E-36 T 13-10-2018 RAM_24190 e825ed14580e5d399ecb1962ad9c0cb1 430 Pfam PF01645 Conserved region in glutamate synthase 138 369 2.3E-21 T 13-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 RAM_24190 e825ed14580e5d399ecb1962ad9c0cb1 430 SUPERFAMILY SSF51395 48 403 4.4E-48 T 13-10-2018 RAM_24190 e825ed14580e5d399ecb1962ad9c0cb1 430 Gene3D G3DSA:3.20.20.70 195 373 3.0E-36 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_36605 f6acdb1fde7c99a9f97846792c5610ac 484 SUPERFAMILY SSF103473 11 199 4.45E-35 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_36605 f6acdb1fde7c99a9f97846792c5610ac 484 Gene3D G3DSA:1.20.1250.20 266 470 3.1E-13 T 13-10-2018 RAM_36605 f6acdb1fde7c99a9f97846792c5610ac 484 SUPERFAMILY SSF103473 207 468 4.32E-23 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_36605 f6acdb1fde7c99a9f97846792c5610ac 484 Pfam PF07690 Major Facilitator Superfamily 25 415 3.1E-35 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_36605 f6acdb1fde7c99a9f97846792c5610ac 484 Gene3D G3DSA:1.20.1720.10 21 207 1.3E-35 T 13-10-2018 RAM_16380 fd6173209dbe1ecbc8c5d27800d22a2e 237 SMART SM00418 17 96 1.7E-13 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_16380 fd6173209dbe1ecbc8c5d27800d22a2e 237 SUPERFAMILY SSF46785 13 97 1.12E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_16380 fd6173209dbe1ecbc8c5d27800d22a2e 237 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 67 82 4.6E-7 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_16380 fd6173209dbe1ecbc8c5d27800d22a2e 237 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 52 67 4.6E-7 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_16380 fd6173209dbe1ecbc8c5d27800d22a2e 237 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 19 34 4.6E-7 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_16380 fd6173209dbe1ecbc8c5d27800d22a2e 237 Pfam PF12840 Helix-turn-helix domain 19 76 1.2E-9 T 13-10-2018 RAM_16380 fd6173209dbe1ecbc8c5d27800d22a2e 237 Gene3D G3DSA:1.10.10.10 9 110 2.5E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_24500 6398116c2bdbac58fa0cf362cc1f1284 278 Pfam PF01457 Leishmanolysin 108 241 3.4E-11 T 13-10-2018 IPR001577 Peptidase M8, leishmanolysin GO:0004222|GO:0006508|GO:0007155|GO:0016020 RAM_24500 6398116c2bdbac58fa0cf362cc1f1284 278 Gene3D G3DSA:3.90.132.10 152 246 1.2E-10 T 13-10-2018 RAM_24500 6398116c2bdbac58fa0cf362cc1f1284 278 SUPERFAMILY SSF55486 44 243 1.85E-33 T 13-10-2018 RAM_07435 f28b713eaeab35e5d0b8a85729b999a1 369 Pfam PF07730 Histidine kinase 176 240 3.1E-9 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_07435 f28b713eaeab35e5d0b8a85729b999a1 369 PRINTS PR00344 Bacterial sensor protein C-terminal signature 331 349 4.8E-5 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_07435 f28b713eaeab35e5d0b8a85729b999a1 369 PRINTS PR00344 Bacterial sensor protein C-terminal signature 355 368 4.8E-5 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_07435 f28b713eaeab35e5d0b8a85729b999a1 369 PRINTS PR00344 Bacterial sensor protein C-terminal signature 316 330 4.8E-5 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RAM_07435 f28b713eaeab35e5d0b8a85729b999a1 369 Pfam PF13185 GAF domain 22 159 2.5E-19 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_07435 f28b713eaeab35e5d0b8a85729b999a1 369 SUPERFAMILY SSF55874 253 369 2.1E-16 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_07435 f28b713eaeab35e5d0b8a85729b999a1 369 Gene3D G3DSA:3.30.450.40 4 172 4.9E-23 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_07435 f28b713eaeab35e5d0b8a85729b999a1 369 SUPERFAMILY SSF55781 27 168 1.16E-18 T 13-10-2018 RAM_07435 f28b713eaeab35e5d0b8a85729b999a1 369 SMART SM00065 10 169 3.8E-10 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_07435 f28b713eaeab35e5d0b8a85729b999a1 369 Gene3D G3DSA:3.30.565.10 206 369 6.7E-23 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_14805 8f22f25e11a30353cc5de9e30e262bc9 119 Gene3D G3DSA:3.30.530.20 6 111 5.3E-6 T 13-10-2018 IPR023393 START-like domain superfamily RAM_14805 8f22f25e11a30353cc5de9e30e262bc9 119 SUPERFAMILY SSF55961 8 91 1.81E-10 T 13-10-2018 RAM_43340 7303fe072b5d607b3af42cb99a9a9f26 560 Gene3D G3DSA:1.10.4160.10 33 485 3.3E-20 T 13-10-2018 IPR038271 Purine-cytosine permease superfamily RAM_21445 8f8d87a2993b048c5c6fc60857260982 191 Gene3D G3DSA:1.20.120.450 2 131 5.1E-15 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_21445 8f8d87a2993b048c5c6fc60857260982 191 Pfam PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain 13 128 8.5E-15 T 13-10-2018 IPR024344 Mycothiol-dependent maleylpyruvate isomerase, metal-binding domain GO:0046872 RAM_21445 8f8d87a2993b048c5c6fc60857260982 191 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 10 181 8.5E-21 T 13-10-2018 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type RAM_21445 8f8d87a2993b048c5c6fc60857260982 191 SUPERFAMILY SSF109854 6 134 2.59E-20 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_21445 8f8d87a2993b048c5c6fc60857260982 191 TIGRFAM TIGR03086 TIGR03086: TIGR03086 family protein 13 185 6.6E-39 T 13-10-2018 IPR017520 Conserved hypothetical protein CHP03086 RAM_36735 e4f954941c158e38283bb67fe91da9c7 213 Gene3D G3DSA:3.40.50.720 1 213 2.4E-44 T 13-10-2018 RAM_36735 e4f954941c158e38283bb67fe91da9c7 213 Pfam PF13460 NAD(P)H-binding 7 201 1.1E-41 T 13-10-2018 IPR016040 NAD(P)-binding domain RAM_36735 e4f954941c158e38283bb67fe91da9c7 213 SUPERFAMILY SSF51735 1 212 2.59E-39 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_33655 341211df54dffcf251f9b821969d11b1 243 SMART SM01012 181 236 4.9E-22 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 RAM_33655 341211df54dffcf251f9b821969d11b1 243 PIRSF PIRSF036625 2 243 4.6E-49 T 13-10-2018 IPR012074 GAF-ANTAR transcription anti-termination regulator, putative RAM_33655 341211df54dffcf251f9b821969d11b1 243 SUPERFAMILY SSF55781 33 181 7.52E-14 T 13-10-2018 RAM_33655 341211df54dffcf251f9b821969d11b1 243 Gene3D G3DSA:3.30.450.40 15 184 5.3E-17 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_33655 341211df54dffcf251f9b821969d11b1 243 Pfam PF13185 GAF domain 32 165 3.5E-10 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_33655 341211df54dffcf251f9b821969d11b1 243 Gene3D G3DSA:1.10.10.10 185 241 2.3E-11 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_33655 341211df54dffcf251f9b821969d11b1 243 SUPERFAMILY SSF52172 166 234 4.97E-10 T 13-10-2018 IPR011006 CheY-like superfamily RAM_33655 341211df54dffcf251f9b821969d11b1 243 Pfam PF03861 ANTAR domain 183 235 1.7E-20 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 RAM_30935 992398e04a5905ede08340a46d2e9430 212 SUPERFAMILY SSF50486 10 203 1.1E-57 T 13-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 RAM_30935 992398e04a5905ede08340a46d2e9430 212 Pfam PF02245 Methylpurine-DNA glycosylase (MPG) 17 195 2.6E-62 T 13-10-2018 IPR003180 Methylpurine-DNA glycosylase GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 RAM_30935 992398e04a5905ede08340a46d2e9430 212 Hamap MF_00527 Putative 3-methyladenine DNA glycosylase. 6 198 31.112 T 13-10-2018 IPR003180 Methylpurine-DNA glycosylase GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 RAM_30935 992398e04a5905ede08340a46d2e9430 212 TIGRFAM TIGR00567 3mg: DNA-3-methyladenine glycosylase 11 198 7.9E-54 T 13-10-2018 IPR003180 Methylpurine-DNA glycosylase GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 RAM_30935 992398e04a5905ede08340a46d2e9430 212 Gene3D G3DSA:3.10.300.10 7 209 8.2E-63 T 13-10-2018 IPR036995 Methylpurine-DNA glycosylase superfamily GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 RAM_06065 a64b2c3f60f27e56fd9729b5273cb50b 475 Gene3D G3DSA:3.40.309.10 249 438 2.7E-141 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RAM_06065 a64b2c3f60f27e56fd9729b5273cb50b 475 Pfam PF00171 Aldehyde dehydrogenase family 25 466 1.6E-126 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RAM_06065 a64b2c3f60f27e56fd9729b5273cb50b 475 SUPERFAMILY SSF53720 2 469 3.27E-127 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RAM_06065 a64b2c3f60f27e56fd9729b5273cb50b 475 Gene3D G3DSA:3.40.605.10 35 456 2.7E-141 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RAM_18020 30d7cb27f9cda28ec273327da43d279b 231 Gene3D G3DSA:3.40.50.300 2 226 1.5E-67 T 13-10-2018 RAM_18020 30d7cb27f9cda28ec273327da43d279b 231 SUPERFAMILY SSF52540 5 221 9.96E-67 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_18020 30d7cb27f9cda28ec273327da43d279b 231 SMART SM00382 30 217 1.8E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_18020 30d7cb27f9cda28ec273327da43d279b 231 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_18020 30d7cb27f9cda28ec273327da43d279b 231 Pfam PF00005 ABC transporter 21 169 3.8E-35 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_37595 f19c3931f86cccb09f14c3b92b113aef 243 Pfam PF08305 NPCBM/NEW2 domain 124 233 1.6E-7 T 13-10-2018 IPR013222 Glycosyl hydrolase family 98, putative carbohydrate-binding module RAM_37595 f19c3931f86cccb09f14c3b92b113aef 243 SUPERFAMILY SSF49785 143 228 1.96E-5 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_12265 3fdd53ee13e68b0efac61231f4ccc67d 356 Gene3D G3DSA:3.30.565.10 229 356 4.1E-26 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_12265 3fdd53ee13e68b0efac61231f4ccc67d 356 SUPERFAMILY SSF55874 234 355 4.86E-9 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_12265 3fdd53ee13e68b0efac61231f4ccc67d 356 Pfam PF07730 Histidine kinase 163 230 2.7E-15 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_12180 3ebfc66d2db5cb2d80bd7e547a9e8591 937 Pfam PF02867 Ribonucleotide reductase, barrel domain 158 693 7.1E-142 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RAM_12180 3ebfc66d2db5cb2d80bd7e547a9e8591 937 Gene3D G3DSA:3.20.70.20 64 709 2.5E-197 T 13-10-2018 RAM_12180 3ebfc66d2db5cb2d80bd7e547a9e8591 937 PRINTS PR01183 Ribonucleotide reductase large chain signature 394 417 1.0E-12 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RAM_12180 3ebfc66d2db5cb2d80bd7e547a9e8591 937 PRINTS PR01183 Ribonucleotide reductase large chain signature 233 252 1.0E-12 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RAM_12180 3ebfc66d2db5cb2d80bd7e547a9e8591 937 PRINTS PR01183 Ribonucleotide reductase large chain signature 539 566 1.0E-12 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RAM_12180 3ebfc66d2db5cb2d80bd7e547a9e8591 937 PRINTS PR01183 Ribonucleotide reductase large chain signature 360 371 1.0E-12 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RAM_12180 3ebfc66d2db5cb2d80bd7e547a9e8591 937 PRINTS PR01183 Ribonucleotide reductase large chain signature 432 454 1.0E-12 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RAM_12180 3ebfc66d2db5cb2d80bd7e547a9e8591 937 SUPERFAMILY SSF51998 158 697 1.34E-131 T 13-10-2018 RAM_12180 3ebfc66d2db5cb2d80bd7e547a9e8591 937 Pfam PF08471 Class II vitamin B12-dependent ribonucleotide reductase 54 137 3.0E-19 T 13-10-2018 IPR013678 Ribonucleotide reductase class II vitamin B12-dependent, N-terminal domain GO:0004748|GO:0050897|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RAM_12180 3ebfc66d2db5cb2d80bd7e547a9e8591 937 TIGRFAM TIGR02504 NrdJ_Z: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent 93 703 8.2E-185 T 13-10-2018 IPR013344 Ribonucleotide reductase, adenosylcobalamin-dependent GO:0000166|GO:0004748|GO:0031419|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RAM_27585 492959fa0e1d2de6b38ddca40a28a2cb 400 Pfam PF06722 Protein of unknown function (DUF1205) 186 279 5.8E-20 T 13-10-2018 IPR010610 Domain of unknown function DUF1205 RAM_27585 492959fa0e1d2de6b38ddca40a28a2cb 400 Gene3D G3DSA:3.40.50.11450 2 390 1.1E-113 T 13-10-2018 RAM_27585 492959fa0e1d2de6b38ddca40a28a2cb 400 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 286 370 2.5E-7 T 13-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 RAM_27585 492959fa0e1d2de6b38ddca40a28a2cb 400 SUPERFAMILY SSF53756 2 392 3.77E-70 T 13-10-2018 RAM_27585 492959fa0e1d2de6b38ddca40a28a2cb 400 Gene3D G3DSA:3.40.50.2000 207 377 1.1E-113 T 13-10-2018 RAM_30740 2f633456939e8194316b413975f8bc1f 764 SUPERFAMILY SSF48208 247 697 1.87E-37 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_30740 2f633456939e8194316b413975f8bc1f 764 Gene3D G3DSA:1.50.10.10 242 515 4.0E-11 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 RAM_30740 2f633456939e8194316b413975f8bc1f 764 Gene3D G3DSA:2.60.40.1180 622 725 3.5E-9 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta RAM_35995 03c55be57f2f58cd253e9c000a195d99 329 Gene3D G3DSA:1.20.120.1840 2 172 8.0E-42 T 13-10-2018 RAM_35995 03c55be57f2f58cd253e9c000a195d99 329 TIGRFAM TIGR00512 salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 3 318 2.5E-112 T 13-10-2018 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 RAM_35995 03c55be57f2f58cd253e9c000a195d99 329 SUPERFAMILY SSF100950 3 322 7.18E-101 T 13-10-2018 IPR037171 NagB/RpiA transferase-like RAM_35995 03c55be57f2f58cd253e9c000a195d99 329 Pfam PF01008 Initiation factor 2 subunit family 62 319 3.7E-62 T 13-10-2018 IPR000649 Initiation factor 2B-related GO:0044237 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174 RAM_35995 03c55be57f2f58cd253e9c000a195d99 329 Gene3D G3DSA:3.40.50.10470 173 326 9.1E-53 T 13-10-2018 RAM_35995 03c55be57f2f58cd253e9c000a195d99 329 Hamap MF_01678 Putative methylthioribose-1-phosphate isomerase [mtnA]. 1 329 35.568 T 13-10-2018 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 RAM_35995 03c55be57f2f58cd253e9c000a195d99 329 TIGRFAM TIGR00524 eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 30 318 8.8E-90 T 13-10-2018 IPR011559 Initiation factor 2B alpha/beta/delta GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 RAM_05985 22d2ba200611324e2ba09a637095c978 192 SUPERFAMILY SSF88946 33 118 2.59E-15 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_05985 22d2ba200611324e2ba09a637095c978 192 Pfam PF08281 Sigma-70, region 4 132 182 3.7E-10 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_05985 22d2ba200611324e2ba09a637095c978 192 SUPERFAMILY SSF88659 125 187 1.63E-13 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_05985 22d2ba200611324e2ba09a637095c978 192 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 37 186 2.9E-23 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_05985 22d2ba200611324e2ba09a637095c978 192 Pfam PF04542 Sigma-70 region 2 35 103 3.5E-13 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_05985 22d2ba200611324e2ba09a637095c978 192 Gene3D G3DSA:1.10.10.10 121 192 4.6E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_05985 22d2ba200611324e2ba09a637095c978 192 Gene3D G3DSA:1.10.1740.10 26 100 2.7E-13 T 13-10-2018 RAM_42440 64c49c9f1e007dfad56352a00ff1da4e 623 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 4 58 3.8E-20 T 13-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 RAM_42440 64c49c9f1e007dfad56352a00ff1da4e 623 SUPERFAMILY SSF56801 4 622 8.9E-160 T 13-10-2018 RAM_42440 64c49c9f1e007dfad56352a00ff1da4e 623 ProSitePatterns PS00455 Putative AMP-binding domain signature. 236 247 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_42440 64c49c9f1e007dfad56352a00ff1da4e 623 Gene3D G3DSA:3.30.300.30 496 623 1.5E-24 T 13-10-2018 RAM_42440 64c49c9f1e007dfad56352a00ff1da4e 623 Gene3D G3DSA:3.40.50.12780 36 493 2.1E-109 T 13-10-2018 RAM_42440 64c49c9f1e007dfad56352a00ff1da4e 623 Pfam PF00501 AMP-binding enzyme 67 500 6.0E-89 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_42440 64c49c9f1e007dfad56352a00ff1da4e 623 Pfam PF13193 AMP-binding enzyme C-terminal domain 510 588 3.1E-25 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_13670 0ab205679b851431511d60e8109fa324 124 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 3 120 18.202 T 13-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 RAM_13670 0ab205679b851431511d60e8109fa324 124 TIGRFAM TIGR00494 crcB: protein CrcB 5 119 3.0E-27 T 13-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 RAM_13670 0ab205679b851431511d60e8109fa324 124 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 5 111 1.1E-24 T 13-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 RAM_35210 badceed12597e2d3e72147157e08a572 190 SUPERFAMILY SSF50475 31 184 1.32E-48 T 13-10-2018 RAM_35210 badceed12597e2d3e72147157e08a572 190 SMART SM00903 35 182 2.5E-56 T 13-10-2018 IPR002563 Flavin reductase like domain GO:0010181 RAM_35210 badceed12597e2d3e72147157e08a572 190 Pfam PF01613 Flavin reductase like domain 35 183 4.7E-35 T 13-10-2018 IPR002563 Flavin reductase like domain GO:0010181 RAM_35210 badceed12597e2d3e72147157e08a572 190 Gene3D G3DSA:2.30.110.10 25 189 2.7E-52 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_34550 50523ff0a70b063f0aff58770c1011ad 235 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 35 58 9.0E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_34550 50523ff0a70b063f0aff58770c1011ad 235 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 14 27 9.0E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_34550 50523ff0a70b063f0aff58770c1011ad 235 SUPERFAMILY SSF46689 3 75 2.15E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_34550 50523ff0a70b063f0aff58770c1011ad 235 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 60 2.0E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_34550 50523ff0a70b063f0aff58770c1011ad 235 Pfam PF13305 WHG domain 88 181 8.6E-13 T 13-10-2018 IPR025996 WHG domain RAM_34550 50523ff0a70b063f0aff58770c1011ad 235 SUPERFAMILY SSF48498 84 186 1.33E-18 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_34550 50523ff0a70b063f0aff58770c1011ad 235 Gene3D G3DSA:1.10.357.10 5 206 2.7E-42 T 13-10-2018 RAM_19115 47e470fe6857312338554b5d216d2c1b 517 Pfam PF01494 FAD binding domain 5 357 1.3E-87 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_19115 47e470fe6857312338554b5d216d2c1b 517 Gene3D G3DSA:3.50.50.60 6 351 1.4E-102 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_19115 47e470fe6857312338554b5d216d2c1b 517 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 308 324 3.9E-38 T 13-10-2018 RAM_19115 47e470fe6857312338554b5d216d2c1b 517 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 293 308 3.9E-38 T 13-10-2018 RAM_19115 47e470fe6857312338554b5d216d2c1b 517 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 3.9E-38 T 13-10-2018 RAM_19115 47e470fe6857312338554b5d216d2c1b 517 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 326 344 3.9E-38 T 13-10-2018 RAM_19115 47e470fe6857312338554b5d216d2c1b 517 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 344 360 3.9E-38 T 13-10-2018 RAM_19115 47e470fe6857312338554b5d216d2c1b 517 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 168 183 3.9E-38 T 13-10-2018 RAM_19115 47e470fe6857312338554b5d216d2c1b 517 SUPERFAMILY SSF51905 5 361 2.59E-59 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_19115 47e470fe6857312338554b5d216d2c1b 517 Gene3D G3DSA:3.30.9.50 72 290 1.4E-102 T 13-10-2018 RAM_19115 47e470fe6857312338554b5d216d2c1b 517 Gene3D G3DSA:3.40.30.120 384 510 1.1E-24 T 13-10-2018 RAM_31425 1c5e7a0fd30a05864d40886d4a498151 237 Gene3D G3DSA:3.40.50.300 2 188 5.1E-9 T 13-10-2018 RAM_31425 1c5e7a0fd30a05864d40886d4a498151 237 SMART SM00382 27 208 1.5E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_31425 1c5e7a0fd30a05864d40886d4a498151 237 SUPERFAMILY SSF52540 10 188 5.88E-11 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_12880 603c98400de2cafe53def7c8a539d2d8 296 SUPERFAMILY SSF46785 4 84 3.27E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_12880 603c98400de2cafe53def7c8a539d2d8 296 Pfam PF03466 LysR substrate binding domain 92 295 5.0E-26 T 13-10-2018 IPR005119 LysR, substrate-binding RAM_12880 603c98400de2cafe53def7c8a539d2d8 296 SUPERFAMILY SSF53850 90 293 2.64E-39 T 13-10-2018 RAM_12880 603c98400de2cafe53def7c8a539d2d8 296 Gene3D G3DSA:1.10.10.10 1 85 6.3E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_12880 603c98400de2cafe53def7c8a539d2d8 296 Gene3D G3DSA:3.40.190.10 91 290 1.6E-54 T 13-10-2018 RAM_12880 603c98400de2cafe53def7c8a539d2d8 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 7.9E-18 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_12880 603c98400de2cafe53def7c8a539d2d8 296 Gene3D G3DSA:3.40.190.10 167 266 1.6E-54 T 13-10-2018 RAM_37710 ea7f153b0efd71639d9b362c66d5a47f 320 Pfam PF00296 Luciferase-like monooxygenase 4 252 5.7E-55 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_37710 ea7f153b0efd71639d9b362c66d5a47f 320 SUPERFAMILY SSF51679 18 315 3.66E-59 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_37710 ea7f153b0efd71639d9b362c66d5a47f 320 Gene3D G3DSA:3.20.20.30 13 316 1.7E-65 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_20475 f0c098f565080d57ef88b9a47bbcf1a2 264 SUPERFAMILY SSF51735 7 259 3.12E-68 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_20475 f0c098f565080d57ef88b9a47bbcf1a2 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 1.3E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_20475 f0c098f565080d57ef88b9a47bbcf1a2 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 1.3E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_20475 f0c098f565080d57ef88b9a47bbcf1a2 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 1.3E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_20475 f0c098f565080d57ef88b9a47bbcf1a2 264 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_20475 f0c098f565080d57ef88b9a47bbcf1a2 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 3.6E-41 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_20475 f0c098f565080d57ef88b9a47bbcf1a2 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 3.6E-41 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_20475 f0c098f565080d57ef88b9a47bbcf1a2 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 3.6E-41 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_20475 f0c098f565080d57ef88b9a47bbcf1a2 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 3.6E-41 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_20475 f0c098f565080d57ef88b9a47bbcf1a2 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 222 242 3.6E-41 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_20475 f0c098f565080d57ef88b9a47bbcf1a2 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 3.6E-41 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_20475 f0c098f565080d57ef88b9a47bbcf1a2 264 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 259 5.4E-51 T 13-10-2018 RAM_20475 f0c098f565080d57ef88b9a47bbcf1a2 264 Gene3D G3DSA:3.40.50.720 2 263 5.1E-68 T 13-10-2018 RAM_42640 2360b1bda341b7c227b119643b03c8f2 1085 SUPERFAMILY SSF52540 677 1055 7.32E-34 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_42640 2360b1bda341b7c227b119643b03c8f2 1085 Gene3D G3DSA:3.40.50.300 668 787 1.0E-10 T 13-10-2018 RAM_42640 2360b1bda341b7c227b119643b03c8f2 1085 SMART SM00382 699 1019 2.5E-5 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_42640 2360b1bda341b7c227b119643b03c8f2 1085 SMART SM00382 57 333 0.81 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_42640 2360b1bda341b7c227b119643b03c8f2 1085 Gene3D G3DSA:3.40.50.300 901 1064 5.4E-16 T 13-10-2018 RAM_42640 2360b1bda341b7c227b119643b03c8f2 1085 SUPERFAMILY SSF52540 54 388 8.46E-6 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_42640 2360b1bda341b7c227b119643b03c8f2 1085 Pfam PF01935 Domain of unknown function DUF87 681 931 1.1E-9 T 13-10-2018 IPR002789 Helicase HerA, central domain RAM_29475 6bffdf90711dbe8dc59f7ebbe8454cae 293 Gene3D G3DSA:3.30.450.180 111 290 4.0E-18 T 13-10-2018 RAM_29475 6bffdf90711dbe8dc59f7ebbe8454cae 293 Pfam PF13560 Helix-turn-helix domain 14 89 1.4E-13 T 13-10-2018 RAM_29475 6bffdf90711dbe8dc59f7ebbe8454cae 293 Gene3D G3DSA:1.10.260.40 30 100 5.8E-8 T 13-10-2018 RAM_29475 6bffdf90711dbe8dc59f7ebbe8454cae 293 SMART SM00530 9 86 3.9E-4 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_29475 6bffdf90711dbe8dc59f7ebbe8454cae 293 SUPERFAMILY SSF47413 35 83 6.62E-7 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_11900 8554093d21ccc65643124b081adeb5f4 446 Gene3D G3DSA:1.20.1250.20 4 430 3.1E-81 T 13-10-2018 RAM_11900 8554093d21ccc65643124b081adeb5f4 446 SUPERFAMILY SSF103473 3 429 1.83E-90 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_11900 8554093d21ccc65643124b081adeb5f4 446 Pfam PF07690 Major Facilitator Superfamily 16 393 2.1E-58 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_00960 04b839f77cc9601716405f829a97470d 388 Pfam PF03738 Glutathionylspermidine synthase preATP-grasp 12 385 6.0E-143 T 13-10-2018 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain RAM_00960 04b839f77cc9601716405f829a97470d 388 SUPERFAMILY SSF52440 174 283 1.01E-32 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RAM_00960 04b839f77cc9601716405f829a97470d 388 Gene3D G3DSA:3.30.1490.330 267 344 6.9E-24 T 13-10-2018 RAM_00960 04b839f77cc9601716405f829a97470d 388 SUPERFAMILY SSF56059 4 384 2.75E-70 T 13-10-2018 RAM_32960 89016e6562cf30d85df0126dcded2bc3 191 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 61 3.4E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_32960 89016e6562cf30d85df0126dcded2bc3 191 Gene3D G3DSA:1.10.357.10 55 187 1.2E-22 T 13-10-2018 RAM_32960 89016e6562cf30d85df0126dcded2bc3 191 Gene3D G3DSA:1.10.10.60 2 53 1.9E-12 T 13-10-2018 RAM_32960 89016e6562cf30d85df0126dcded2bc3 191 SUPERFAMILY SSF48498 78 189 1.19E-14 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_32960 89016e6562cf30d85df0126dcded2bc3 191 Pfam PF16859 Bacterial transcriptional repressor C-terminal 75 184 1.1E-19 T 13-10-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RAM_32960 89016e6562cf30d85df0126dcded2bc3 191 SUPERFAMILY SSF46689 4 67 7.18E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_31170 f90e37c8718fdb0b78a3b1e7616490c6 167 Pfam PF03640 Secreted repeat of unknown function 52 88 2.6E-11 T 13-10-2018 IPR005297 Lipoprotein repeat RAM_31170 f90e37c8718fdb0b78a3b1e7616490c6 167 Pfam PF03640 Secreted repeat of unknown function 108 149 8.9E-17 T 13-10-2018 IPR005297 Lipoprotein repeat RAM_47260 078e146c9368ecef9788eb819437f336 472 SUPERFAMILY SSF53187 10 468 5.66E-47 T 13-10-2018 RAM_47260 078e146c9368ecef9788eb819437f336 472 Gene3D G3DSA:3.40.630.10 18 457 7.9E-74 T 13-10-2018 RAM_47260 078e146c9368ecef9788eb819437f336 472 Gene3D G3DSA:3.30.70.360 209 381 7.9E-74 T 13-10-2018 RAM_47260 078e146c9368ecef9788eb819437f336 472 Pfam PF07687 Peptidase dimerisation domain 207 366 3.2E-12 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain RAM_47260 078e146c9368ecef9788eb819437f336 472 Pfam PF01546 Peptidase family M20/M25/M40 95 467 1.3E-23 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 RAM_04925 aa9a376cab77ed96083fe1837ecb20df 61 SUPERFAMILY SSF54427 10 58 4.64E-8 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_04925 aa9a376cab77ed96083fe1837ecb20df 61 Gene3D G3DSA:3.10.450.50 4 59 1.4E-8 T 13-10-2018 RAM_48020 c42b5b5c067df1beb77504e050c5c225 114 Pfam PF01809 Haemolytic domain 33 97 1.3E-25 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor RAM_48020 c42b5b5c067df1beb77504e050c5c225 114 Hamap MF_00386 Putative membrane protein insertion efficiency factor [yidD]. 30 98 23.293 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor RAM_48020 c42b5b5c067df1beb77504e050c5c225 114 SMART SM01234 30 97 1.4E-38 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor RAM_48020 c42b5b5c067df1beb77504e050c5c225 114 TIGRFAM TIGR00278 TIGR00278: putative membrane protein insertion efficiency factor 35 100 2.2E-23 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor RAM_48020 c42b5b5c067df1beb77504e050c5c225 114 ProDom PD004225 UPF0161 ALPHA-HEMOLYSIN YIDD UNCHARACTERIZED CYTOSOLIC PRECURSOR SIGNAL YTJA RNPA SIMILAR 45 97 1.0E-15 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor RAM_21735 fbb44b37006dc73992054cfd5d054fcf 201 SUPERFAMILY SSF52218 1 189 2.02E-25 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RAM_21735 fbb44b37006dc73992054cfd5d054fcf 201 Gene3D G3DSA:3.40.50.360 1 199 3.3E-19 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RAM_21735 fbb44b37006dc73992054cfd5d054fcf 201 Pfam PF03358 NADPH-dependent FMN reductase 4 156 4.8E-22 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 RAM_03635 ff63adf2abefbdb6e5cf1958756d80e2 411 TIGRFAM TIGR03923 T7SS_EccE: type VII secretion protein EccE 17 409 5.8E-57 T 13-10-2018 IPR021368 Type VII secretion system protein EccE RAM_03635 ff63adf2abefbdb6e5cf1958756d80e2 411 Pfam PF11203 Putative type VII ESX secretion system translocon, EccE 216 318 1.9E-24 T 13-10-2018 IPR021368 Type VII secretion system protein EccE RAM_40975 05aac3fbd3dd791f86fa7a482a9b7027 106 TIGRFAM TIGR02949 anti_SigH_actin: anti-sigma factor, TIGR02949 family 7 87 1.4E-25 T 13-10-2018 IPR014295 Anti-sigma factor RAM_40975 05aac3fbd3dd791f86fa7a482a9b7027 106 Pfam PF13490 Putative zinc-finger 14 47 1.2E-7 T 13-10-2018 IPR027383 Putative zinc-finger RAM_40975 05aac3fbd3dd791f86fa7a482a9b7027 106 TIGRFAM TIGR03988 antisig_RsrA: mycothiol system anti-sigma-R factor 13 88 3.0E-28 T 13-10-2018 IPR024020 Anti sigma-R factor, mycothiol system,RsrA RAM_09745 93b9e0249833b321f6687fa384ea6fed 446 Pfam PF01979 Amidohydrolase family 52 416 1.3E-61 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RAM_09745 93b9e0249833b321f6687fa384ea6fed 446 SUPERFAMILY SSF51338 2 443 7.69E-24 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_09745 93b9e0249833b321f6687fa384ea6fed 446 Gene3D G3DSA:3.20.20.140 56 369 1.2E-121 T 13-10-2018 RAM_09745 93b9e0249833b321f6687fa384ea6fed 446 SUPERFAMILY SSF51556 55 369 7.23E-91 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_09745 93b9e0249833b321f6687fa384ea6fed 446 Gene3D G3DSA:2.30.40.10 16 418 1.2E-121 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_34905 6be07b336b9cc66ff81431f529a0138d 265 Gene3D G3DSA:3.40.50.720 4 246 2.0E-58 T 13-10-2018 RAM_34905 6be07b336b9cc66ff81431f529a0138d 265 SUPERFAMILY SSF51735 2 258 5.14E-49 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_34905 6be07b336b9cc66ff81431f529a0138d 265 Pfam PF13460 NAD(P)H-binding 6 164 1.1E-12 T 13-10-2018 IPR016040 NAD(P)-binding domain RAM_34905 6be07b336b9cc66ff81431f529a0138d 265 Gene3D G3DSA:3.90.25.10 118 248 2.0E-58 T 13-10-2018 RAM_25615 5116f1f68bd08b958ce7bdcb271d4966 69 SMART SM00923 3 53 1.3E-28 T 13-10-2018 IPR005153 MbtH-like domain RAM_25615 5116f1f68bd08b958ce7bdcb271d4966 69 Pfam PF03621 MbtH-like protein 1 52 8.6E-27 T 13-10-2018 IPR005153 MbtH-like domain RAM_25615 5116f1f68bd08b958ce7bdcb271d4966 69 Gene3D G3DSA:3.90.820.10 1 69 2.2E-33 T 13-10-2018 RAM_25615 5116f1f68bd08b958ce7bdcb271d4966 69 SUPERFAMILY SSF160582 1 68 2.09E-30 T 13-10-2018 IPR038020 MbtH-like domain superfamily RAM_45020 20ee75966d872e667052a00cb73883e2 298 Gene3D G3DSA:3.90.1200.10 100 290 9.0E-13 T 13-10-2018 RAM_45020 20ee75966d872e667052a00cb73883e2 298 SUPERFAMILY SSF56112 12 272 8.69E-38 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_45020 20ee75966d872e667052a00cb73883e2 298 Pfam PF01636 Phosphotransferase enzyme family 45 243 1.5E-18 T 13-10-2018 IPR002575 Aminoglycoside phosphotransferase RAM_17940 51232574ddf2445f164497f996690578 499 Pfam PF13245 AAA domain 10 244 2.6E-12 T 13-10-2018 RAM_17940 51232574ddf2445f164497f996690578 499 SUPERFAMILY SSF52540 5 481 4.25E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_17940 51232574ddf2445f164497f996690578 499 Gene3D G3DSA:3.40.50.300 343 491 3.1E-10 T 13-10-2018 RAM_17940 51232574ddf2445f164497f996690578 499 Pfam PF13361 UvrD-like helicase C-terminal domain 408 473 1.6E-7 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 RAM_29635 94b2871e75f512cfe0b2c61e035eedeb 696 SMART SM00028 292 325 190.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_29635 94b2871e75f512cfe0b2c61e035eedeb 696 SMART SM00028 592 625 34.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_29635 94b2871e75f512cfe0b2c61e035eedeb 696 SMART SM00028 332 365 2.5 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_29635 94b2871e75f512cfe0b2c61e035eedeb 696 Pfam PF13432 Tetratricopeptide repeat 569 622 0.0047 T 13-10-2018 RAM_29635 94b2871e75f512cfe0b2c61e035eedeb 696 SUPERFAMILY SSF48452 298 578 1.12E-9 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_29635 94b2871e75f512cfe0b2c61e035eedeb 696 SUPERFAMILY SSF48452 296 413 2.94E-11 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_29635 94b2871e75f512cfe0b2c61e035eedeb 696 Gene3D G3DSA:1.25.40.10 251 370 2.6E-12 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_29635 94b2871e75f512cfe0b2c61e035eedeb 696 Pfam PF07721 Tetratricopeptide repeat 469 493 0.032 T 13-10-2018 IPR011717 Tetratricopeptide TPR-4 GO:0042802 RAM_29635 94b2871e75f512cfe0b2c61e035eedeb 696 Gene3D G3DSA:1.25.40.10 373 691 2.3E-17 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_29635 94b2871e75f512cfe0b2c61e035eedeb 696 Pfam PF13424 Tetratricopeptide repeat 296 362 3.4E-8 T 13-10-2018 RAM_25345 31dad04dd64b9f75a742e9913fc25721 119 Gene3D G3DSA:3.10.450.50 1 117 3.5E-40 T 13-10-2018 RAM_25345 31dad04dd64b9f75a742e9913fc25721 119 Pfam PF12680 SnoaL-like domain 8 109 1.9E-13 T 13-10-2018 IPR037401 SnoaL-like domain RAM_25345 31dad04dd64b9f75a742e9913fc25721 119 SUPERFAMILY SSF54427 1 115 4.93E-34 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_27030 8564c7c4e48386c6fd1296ef466b3156 106 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 7 101 7.5E-14 T 13-10-2018 IPR008407 Branched-chain amino acid transport, AzlD RAM_24845 242a2655ae60fadc0471bfe1df48aeb8 323 ProSitePatterns PS01218 TatC family signature. 189 208 - T 13-10-2018 IPR019820 Sec-independent periplasmic protein translocase, conserved site RAM_24845 242a2655ae60fadc0471bfe1df48aeb8 323 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 19 274 15.71 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RAM_24845 242a2655ae60fadc0471bfe1df48aeb8 323 Pfam PF00902 Sec-independent protein translocase protein (TatC) 33 255 5.8E-59 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RAM_24845 242a2655ae60fadc0471bfe1df48aeb8 323 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 30 57 1.5E-35 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RAM_24845 242a2655ae60fadc0471bfe1df48aeb8 323 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 139 165 1.5E-35 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RAM_24845 242a2655ae60fadc0471bfe1df48aeb8 323 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 189 217 1.5E-35 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RAM_24845 242a2655ae60fadc0471bfe1df48aeb8 323 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 121 139 1.5E-35 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RAM_24845 242a2655ae60fadc0471bfe1df48aeb8 323 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 31 262 1.2E-62 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RAM_43960 d99560b205d4186e6b1ca847b0c0f9c6 316 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 53 75 - T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RAM_43960 d99560b205d4186e6b1ca847b0c0f9c6 316 Pfam PF01066 CDP-alcohol phosphatidyltransferase 12 75 3.1E-13 T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RAM_43960 d99560b205d4186e6b1ca847b0c0f9c6 316 Gene3D G3DSA:1.20.120.1760 3 126 7.6E-15 T 13-10-2018 RAM_43960 d99560b205d4186e6b1ca847b0c0f9c6 316 TIGRFAM TIGR00473 pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase 17 181 4.0E-33 T 13-10-2018 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase KEGG: 00260+2.7.8.8|KEGG: 00564+2.7.8.8|MetaCyc: PWY-5669 RAM_29760 27a52296d095a1bc2b2e826cfde63aad 343 SUPERFAMILY SSF63829 201 317 3.27E-7 T 13-10-2018 RAM_29760 27a52296d095a1bc2b2e826cfde63aad 343 Pfam PF04471 Restriction endonuclease 35 135 3.8E-7 T 13-10-2018 IPR007560 Restriction endonuclease type IV, Mrr GO:0003677|GO:0004519|GO:0009307 RAM_29760 27a52296d095a1bc2b2e826cfde63aad 343 SUPERFAMILY SSF52980 35 138 9.33E-9 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 RAM_20020 00d131540c55e7f58dbec5f646579de4 330 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 35 93 4.8E-8 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_20020 00d131540c55e7f58dbec5f646579de4 330 Gene3D G3DSA:3.40.50.720 129 273 1.4E-83 T 13-10-2018 RAM_20020 00d131540c55e7f58dbec5f646579de4 330 SMART SM00829 17 328 5.9E-49 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_20020 00d131540c55e7f58dbec5f646579de4 330 Pfam PF00107 Zinc-binding dehydrogenase 158 274 1.0E-26 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RAM_20020 00d131540c55e7f58dbec5f646579de4 330 SUPERFAMILY SSF51735 120 295 1.07E-35 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_20020 00d131540c55e7f58dbec5f646579de4 330 Gene3D G3DSA:3.90.180.10 24 324 1.4E-83 T 13-10-2018 RAM_20020 00d131540c55e7f58dbec5f646579de4 330 SUPERFAMILY SSF50129 6 155 1.28E-33 T 13-10-2018 IPR011032 GroES-like superfamily RAM_03755 e94638f1be7b51e1f7b18d9c7997ebc4 620 Pfam PF01380 SIS domain 469 598 9.9E-21 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 RAM_03755 e94638f1be7b51e1f7b18d9c7997ebc4 620 Pfam PF01380 SIS domain 297 421 1.7E-33 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 RAM_03755 e94638f1be7b51e1f7b18d9c7997ebc4 620 Gene3D G3DSA:3.60.20.10 2 247 1.6E-72 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RAM_03755 e94638f1be7b51e1f7b18d9c7997ebc4 620 SUPERFAMILY SSF53697 253 620 1.86E-105 T 13-10-2018 RAM_03755 e94638f1be7b51e1f7b18d9c7997ebc4 620 Pfam PF13522 Glutamine amidotransferase domain 66 200 1.4E-20 T 13-10-2018 RAM_03755 e94638f1be7b51e1f7b18d9c7997ebc4 620 Gene3D G3DSA:3.40.50.10490 454 605 1.1E-137 T 13-10-2018 RAM_03755 e94638f1be7b51e1f7b18d9c7997ebc4 620 Gene3D G3DSA:3.40.50.10490 258 619 1.1E-137 T 13-10-2018 RAM_03755 e94638f1be7b51e1f7b18d9c7997ebc4 620 SUPERFAMILY SSF56235 2 243 1.2E-64 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RAM_03755 e94638f1be7b51e1f7b18d9c7997ebc4 620 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 620 40.511 T 13-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 RAM_03755 e94638f1be7b51e1f7b18d9c7997ebc4 620 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 620 1.3E-244 T 13-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 RAM_02320 cd4fe05167d9d1442aa5c8f7bab544e3 393 Gene3D G3DSA:2.60.40.3710 149 389 4.2E-84 T 13-10-2018 RAM_02320 cd4fe05167d9d1442aa5c8f7bab544e3 393 Pfam PF03734 L,D-transpeptidase catalytic domain 244 364 1.8E-20 T 13-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 RAM_02320 cd4fe05167d9d1442aa5c8f7bab544e3 393 Gene3D G3DSA:2.40.440.10 245 380 4.2E-84 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like RAM_02320 cd4fe05167d9d1442aa5c8f7bab544e3 393 Gene3D G3DSA:2.60.40.3780 44 140 4.2E-26 T 13-10-2018 RAM_02320 cd4fe05167d9d1442aa5c8f7bab544e3 393 SUPERFAMILY SSF141523 242 364 8.37E-25 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like RAM_05205 3c1386595ffcb0034792195ed9bc4954 329 Hamap MF_01257 2-phospho-L-lactate transferase [cofD]. 1 329 135.002 T 13-10-2018 IPR010115 2-phospho-L-lactate transferase GO:0000287|GO:0016780|GO:0051188 KEGG: 00680+2.7.8.28|MetaCyc: PWY-5198 RAM_05205 3c1386595ffcb0034792195ed9bc4954 329 SUPERFAMILY SSF142338 3 324 2.35E-80 T 13-10-2018 RAM_05205 3c1386595ffcb0034792195ed9bc4954 329 Pfam PF01933 Uncharacterised protein family UPF0052 3 291 5.2E-65 T 13-10-2018 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 RAM_05205 3c1386595ffcb0034792195ed9bc4954 329 Gene3D G3DSA:3.40.50.10680 130 326 3.9E-59 T 13-10-2018 RAM_05205 3c1386595ffcb0034792195ed9bc4954 329 Gene3D G3DSA:1.10.8.240 46 129 2.3E-34 T 13-10-2018 RAM_05205 3c1386595ffcb0034792195ed9bc4954 329 TIGRFAM TIGR01819 F420_cofD: 2-phospho-L-lactate transferase 3 321 2.9E-119 T 13-10-2018 IPR010115 2-phospho-L-lactate transferase GO:0000287|GO:0016780|GO:0051188 KEGG: 00680+2.7.8.28|MetaCyc: PWY-5198 RAM_25725 f0de759c74c41cd207fe20ddbf7fa60f 391 SUPERFAMILY SSF52540 162 354 1.92E-22 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_25725 f0de759c74c41cd207fe20ddbf7fa60f 391 Gene3D G3DSA:3.40.50.300 164 314 3.2E-25 T 13-10-2018 RAM_25725 f0de759c74c41cd207fe20ddbf7fa60f 391 Pfam PF13271 Domain of unknown function (DUF4062) 1 88 1.1E-8 T 13-10-2018 IPR025139 Domain of unknown function DUF4062 RAM_25725 f0de759c74c41cd207fe20ddbf7fa60f 391 Pfam PF00931 NB-ARC domain 199 310 7.7E-7 T 13-10-2018 IPR002182 NB-ARC GO:0043531 Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-6798695|Reactome: R-HSA-6803207|Reactome: R-HSA-8953750 RAM_17675 3e58a390522e0a9dbb3d68286396f87c 170 Gene3D G3DSA:2.70.50.50 30 170 2.4E-50 T 13-10-2018 RAM_17675 3e58a390522e0a9dbb3d68286396f87c 170 SUPERFAMILY SSF81296 30 169 5.74E-35 T 13-10-2018 IPR014756 Immunoglobulin E-set RAM_17675 3e58a390522e0a9dbb3d68286396f87c 170 Pfam PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading 30 167 4.9E-18 T 13-10-2018 IPR004302 Cellulose/chitin-binding protein, N-terminal RAM_26180 333f9cd92bc35844b2469a039ed1eef8 570 SUPERFAMILY SSF53649 261 516 5.0E-12 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 RAM_26180 333f9cd92bc35844b2469a039ed1eef8 570 Gene3D G3DSA:3.40.720.10 259 538 6.4E-18 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 RAM_14780 78479c33d41718e6f0896f8f95d0928c 991 SUPERFAMILY SSF52540 278 469 7.59E-8 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_21890 9febfdeb1a32b55416fc33ada12bee11 376 Pfam PF04107 Glutamate-cysteine ligase family 2(GCS2) 9 291 6.2E-40 T 13-10-2018 IPR006336 Glutamate--cysteine ligase, GCS2 GO:0004357|GO:0042398 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 RAM_21890 9febfdeb1a32b55416fc33ada12bee11 376 Hamap MF_01609 Glutamate--cysteine ligase [gshA]. 1 376 68.96 T 13-10-2018 IPR011793 Putative glutamate--cysteine ligase YbdK GO:0016879 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 RAM_21890 9febfdeb1a32b55416fc33ada12bee11 376 TIGRFAM TIGR02050 gshA_cyan_rel: carboxylate-amine ligase, YbdK family 7 296 7.9E-72 T 13-10-2018 IPR011793 Putative glutamate--cysteine ligase YbdK GO:0016879 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 RAM_21890 9febfdeb1a32b55416fc33ada12bee11 376 Gene3D G3DSA:3.30.590.20 1 365 2.5E-102 T 13-10-2018 RAM_21890 9febfdeb1a32b55416fc33ada12bee11 376 SUPERFAMILY SSF55931 4 356 8.93E-79 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 RAM_39420 d34b98ec78aa6e3b6d501d807671bf5c 264 Pfam PF12697 Alpha/beta hydrolase family 38 251 1.3E-13 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_39420 d34b98ec78aa6e3b6d501d807671bf5c 264 Gene3D G3DSA:3.40.50.1820 1 262 1.7E-62 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_39420 d34b98ec78aa6e3b6d501d807671bf5c 264 SUPERFAMILY SSF53474 3 249 8.84E-30 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_13295 6a9cc1012ab25a1b3c14567ad98b9d79 489 Gene3D G3DSA:3.40.605.10 9 470 2.8E-179 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RAM_13295 6a9cc1012ab25a1b3c14567ad98b9d79 489 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 275 286 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 RAM_13295 6a9cc1012ab25a1b3c14567ad98b9d79 489 SUPERFAMILY SSF53720 3 480 7.72E-165 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RAM_13295 6a9cc1012ab25a1b3c14567ad98b9d79 489 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 247 254 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 RAM_13295 6a9cc1012ab25a1b3c14567ad98b9d79 489 Pfam PF00171 Aldehyde dehydrogenase family 10 475 8.4E-166 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RAM_13295 6a9cc1012ab25a1b3c14567ad98b9d79 489 Gene3D G3DSA:3.40.309.10 252 445 2.8E-179 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RAM_01440 9cb21dc805510929cf91e93bea077e7f 212 Gene3D G3DSA:3.40.109.10 2 210 2.6E-34 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RAM_01440 9cb21dc805510929cf91e93bea077e7f 212 Pfam PF00881 Nitroreductase family 11 185 8.1E-21 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 RAM_01440 9cb21dc805510929cf91e93bea077e7f 212 SUPERFAMILY SSF55469 2 212 4.06E-30 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RAM_36150 f6248d4e84591cb4bbb423871938b701 344 Pfam PF03186 CobD/Cbib protein 2 278 8.0E-90 T 13-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 RAM_36150 f6248d4e84591cb4bbb423871938b701 344 Hamap MF_00024 Cobalamin biosynthesis protein CbiB [cbiB]. 1 303 91.607 T 13-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 RAM_36150 f6248d4e84591cb4bbb423871938b701 344 TIGRFAM TIGR00380 cobD: cobalamin biosynthesis protein CobD 5 268 4.3E-55 T 13-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 RAM_34455 ddf191b9d2b15b75bcf10e45591f8aba 132 Pfam PF14017 Protein of unknown function (DUF4233) 19 121 3.1E-27 T 13-10-2018 IPR025327 Protein of unknown function DUF4233 RAM_09455 4be52fb8f15e4d54468080088b7ef947 133 Pfam PF02627 Carboxymuconolactone decarboxylase family 35 116 9.2E-23 T 13-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RAM_09455 4be52fb8f15e4d54468080088b7ef947 133 Gene3D G3DSA:1.20.1290.10 2 123 8.3E-39 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_09455 4be52fb8f15e4d54468080088b7ef947 133 SUPERFAMILY SSF69118 3 120 7.98E-36 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_09455 4be52fb8f15e4d54468080088b7ef947 133 TIGRFAM TIGR02425 decarb_PcaC: 4-carboxymuconolactone decarboxylase 3 122 1.0E-51 T 13-10-2018 IPR012788 4-carboxymuconolactone decarboxylase KEGG: 00362+4.1.1.44 RAM_05415 b0d411263efd686b605fcb01534d321c 417 Pfam PF01609 Transposase DDE domain 144 265 4.2E-11 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 RAM_05415 b0d411263efd686b605fcb01534d321c 417 Pfam PF13808 DDE_Tnp_1-associated 35 127 5.1E-21 T 13-10-2018 IPR032806 H repeat-associated protein, N-terminal RAM_47830 7300bc7982a124be7efb47a5658777e9 245 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 4.2E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_47830 7300bc7982a124be7efb47a5658777e9 245 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 4.2E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_47830 7300bc7982a124be7efb47a5658777e9 245 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 62 7.8E-14 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_47830 7300bc7982a124be7efb47a5658777e9 245 SUPERFAMILY SSF48498 90 238 1.11E-21 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_47830 7300bc7982a124be7efb47a5658777e9 245 SUPERFAMILY SSF46689 6 78 2.74E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_47830 7300bc7982a124be7efb47a5658777e9 245 Gene3D G3DSA:1.10.357.10 1 243 3.4E-61 T 13-10-2018 RAM_00435 6755b3f04ff83b8c2ab867f2618a74e8 419 SUPERFAMILY SSF103473 16 415 6.54E-50 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_00435 6755b3f04ff83b8c2ab867f2618a74e8 419 Gene3D G3DSA:1.20.1250.20 17 215 4.0E-20 T 13-10-2018 RAM_00435 6755b3f04ff83b8c2ab867f2618a74e8 419 Pfam PF07690 Major Facilitator Superfamily 55 277 1.9E-20 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_00435 6755b3f04ff83b8c2ab867f2618a74e8 419 Gene3D G3DSA:1.20.1250.20 230 417 2.0E-27 T 13-10-2018 RAM_00435 6755b3f04ff83b8c2ab867f2618a74e8 419 Pfam PF06779 Uncharacterised MFS-type transporter YbfB 280 412 1.8E-9 T 13-10-2018 IPR010645 Uncharacterised MFS-type transporter YbfB RAM_09505 33b088e6ced81f128fbcd88883c002c1 304 SUPERFAMILY SSF55961 2 146 4.89E-33 T 13-10-2018 RAM_09505 33b088e6ced81f128fbcd88883c002c1 304 Gene3D G3DSA:3.30.530.20 1 158 2.1E-44 T 13-10-2018 IPR023393 START-like domain superfamily RAM_09505 33b088e6ced81f128fbcd88883c002c1 304 Pfam PF06240 Carbon monoxide dehydrogenase subunit G (CoxG) 6 145 6.2E-20 T 13-10-2018 IPR010419 Carbon monoxide dehydrogenase subunit G RAM_13870 34cfa2c1c6d018cceec873b899bf3684 151 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 4 126 2.1E-44 T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 RAM_13870 34cfa2c1c6d018cceec873b899bf3684 151 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 67 79 - T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 RAM_13870 34cfa2c1c6d018cceec873b899bf3684 151 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 5 123 1.0E-34 T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 RAM_13870 34cfa2c1c6d018cceec873b899bf3684 151 Gene3D G3DSA:2.70.70.10 2 150 2.0E-47 T 13-10-2018 IPR011055 Duplicated hybrid motif RAM_13870 34cfa2c1c6d018cceec873b899bf3684 151 SUPERFAMILY SSF51261 3 146 1.36E-41 T 13-10-2018 IPR011055 Duplicated hybrid motif RAM_17235 05f2255222c03338b59b1e8553e61398 305 Gene3D G3DSA:1.20.140.10 170 305 3.5E-29 T 13-10-2018 RAM_17235 05f2255222c03338b59b1e8553e61398 305 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 98 8.1E-10 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_17235 05f2255222c03338b59b1e8553e61398 305 Gene3D G3DSA:1.10.540.10 2 110 8.0E-19 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_17235 05f2255222c03338b59b1e8553e61398 305 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 172 303 1.2E-21 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_17235 05f2255222c03338b59b1e8553e61398 305 SUPERFAMILY SSF47203 172 305 1.21E-31 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_17235 05f2255222c03338b59b1e8553e61398 305 SUPERFAMILY SSF56645 1 114 5.76E-15 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_35230 ae0c246f51f8aaae61128c548b104d96 341 Pfam PF02627 Carboxymuconolactone decarboxylase family 44 96 1.1E-8 T 13-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RAM_35230 ae0c246f51f8aaae61128c548b104d96 341 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 61 103 4.1E-10 T 13-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RAM_35230 ae0c246f51f8aaae61128c548b104d96 341 Gene3D G3DSA:1.20.1290.10 15 159 5.4E-19 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_35230 ae0c246f51f8aaae61128c548b104d96 341 SUPERFAMILY SSF69118 3 161 2.75E-29 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_10855 f05518046b353ab929b0c7ecbe299caa 480 Pfam PF01381 Helix-turn-helix 10 62 1.5E-5 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_10855 f05518046b353ab929b0c7ecbe299caa 480 SMART SM00530 7 62 1.3E-4 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_10855 f05518046b353ab929b0c7ecbe299caa 480 SUPERFAMILY SSF48452 248 406 7.59E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_10855 f05518046b353ab929b0c7ecbe299caa 480 Gene3D G3DSA:1.10.260.40 6 65 7.8E-10 T 13-10-2018 RAM_10855 f05518046b353ab929b0c7ecbe299caa 480 SUPERFAMILY SSF47413 8 62 1.18E-7 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_35585 0e615ce6a62b1d78a385a2b1728428b1 134 Gene3D G3DSA:2.30.110.10 2 133 4.3E-51 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_35585 0e615ce6a62b1d78a385a2b1728428b1 134 TIGRFAM TIGR00026 hi_GC_TIGR00026: deazaflavin-dependent oxidoreductase, nitroreductase family 22 132 8.8E-32 T 13-10-2018 IPR004378 F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 RAM_35585 0e615ce6a62b1d78a385a2b1728428b1 134 Pfam PF04075 F420H(2)-dependent quinone reductase 6 132 3.2E-46 T 13-10-2018 IPR004378 F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 RAM_43495 3113cbf0a15846b30912c56a833166e0 268 SUPERFAMILY SSF75217 97 266 2.09E-38 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases RAM_43495 3113cbf0a15846b30912c56a833166e0 268 Pfam PF00588 SpoU rRNA Methylase family 121 262 3.9E-29 T 13-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 RAM_43495 3113cbf0a15846b30912c56a833166e0 268 SUPERFAMILY SSF55315 4 105 1.37E-11 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like RAM_43495 3113cbf0a15846b30912c56a833166e0 268 Gene3D G3DSA:3.40.1280.10 108 267 4.1E-43 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RAM_23435 bbbbb76ae6a362e2d6a684850471b123 369 Gene3D G3DSA:3.40.50.1100 51 360 3.2E-93 T 13-10-2018 RAM_23435 bbbbb76ae6a362e2d6a684850471b123 369 SUPERFAMILY SSF53686 3 365 1.44E-76 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RAM_23435 bbbbb76ae6a362e2d6a684850471b123 369 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 64 355 5.6E-60 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RAM_23435 bbbbb76ae6a362e2d6a684850471b123 369 Gene3D G3DSA:3.40.50.1100 95 189 3.2E-93 T 13-10-2018 RAM_06510 8717ab0b0e5a42a35453e06c48c68ae5 304 SMART SM00382 26 204 2.0E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_06510 8717ab0b0e5a42a35453e06c48c68ae5 304 Pfam PF00005 ABC transporter 18 156 4.3E-23 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_06510 8717ab0b0e5a42a35453e06c48c68ae5 304 Gene3D G3DSA:3.40.50.300 1 227 1.6E-52 T 13-10-2018 RAM_06510 8717ab0b0e5a42a35453e06c48c68ae5 304 SUPERFAMILY SSF52540 2 219 5.22E-52 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_29130 f91c183b68d763c3bead7ae5a70c086a 166 SUPERFAMILY SSF51182 28 137 2.41E-22 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RAM_29130 f91c183b68d763c3bead7ae5a70c086a 166 Pfam PF07883 Cupin domain 65 133 5.7E-16 T 13-10-2018 IPR013096 Cupin 2, conserved barrel RAM_29130 f91c183b68d763c3bead7ae5a70c086a 166 Gene3D G3DSA:2.60.120.10 45 155 1.3E-25 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_37875 995febe97f4ae7d74c5c887b0545b9e7 180 SUPERFAMILY SSF46689 2 66 2.98E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_37875 995febe97f4ae7d74c5c887b0545b9e7 180 Pfam PF00440 Bacterial regulatory proteins, tetR family 2 42 2.2E-14 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_37875 995febe97f4ae7d74c5c887b0545b9e7 180 Gene3D G3DSA:1.10.357.10 40 174 2.2E-30 T 13-10-2018 RAM_37875 995febe97f4ae7d74c5c887b0545b9e7 180 Gene3D G3DSA:1.10.10.60 1 39 2.6E-17 T 13-10-2018 RAM_40675 0c11e2a79dfffb4e7163ed40f0caa55a 351 Pfam PF06850 PHB de-polymerase C-terminus 257 347 1.3E-4 T 13-10-2018 IPR009656 PHB de-polymerase, C-terminal RAM_40675 0c11e2a79dfffb4e7163ed40f0caa55a 351 Gene3D G3DSA:3.40.50.1820 40 351 9.9E-22 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_40675 0c11e2a79dfffb4e7163ed40f0caa55a 351 SUPERFAMILY SSF53474 44 348 9.98E-31 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_03805 8a4c130852f22cd4391718799544cbe1 474 Pfam PF13193 AMP-binding enzyme C-terminal domain 392 466 1.7E-20 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_03805 8a4c130852f22cd4391718799544cbe1 474 Gene3D G3DSA:3.30.300.310 379 474 4.4E-30 T 13-10-2018 RAM_03805 8a4c130852f22cd4391718799544cbe1 474 ProSitePatterns PS00455 Putative AMP-binding domain signature. 135 146 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_03805 8a4c130852f22cd4391718799544cbe1 474 Pfam PF00501 AMP-binding enzyme 15 382 2.3E-78 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_03805 8a4c130852f22cd4391718799544cbe1 474 SUPERFAMILY SSF56801 14 472 4.58E-125 T 13-10-2018 RAM_03805 8a4c130852f22cd4391718799544cbe1 474 Gene3D G3DSA:3.40.50.12780 8 377 3.5E-125 T 13-10-2018 RAM_30745 79414ec664961619af9992997b77417e 473 Gene3D G3DSA:1.10.390.60 245 465 2.6E-39 T 13-10-2018 RAM_30745 79414ec664961619af9992997b77417e 473 SUPERFAMILY SSF55486 247 470 3.48E-54 T 13-10-2018 RAM_30745 79414ec664961619af9992997b77417e 473 SUPERFAMILY SSF63737 15 207 2.88E-34 T 13-10-2018 RAM_30745 79414ec664961619af9992997b77417e 473 Pfam PF01433 Peptidase family M1 domain 261 461 2.7E-27 T 13-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RAM_30745 79414ec664961619af9992997b77417e 473 Gene3D G3DSA:2.60.40.1730 28 207 6.4E-23 T 13-10-2018 RAM_30745 79414ec664961619af9992997b77417e 473 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 144 159 1.4E-11 T 13-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RAM_30745 79414ec664961619af9992997b77417e 473 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 323 338 1.4E-11 T 13-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RAM_30745 79414ec664961619af9992997b77417e 473 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 342 354 1.4E-11 T 13-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RAM_21265 8fa71211c7ed68e0bb761553c66655b7 157 Gene3D G3DSA:3.30.530.20 2 156 3.2E-39 T 13-10-2018 IPR023393 START-like domain superfamily RAM_21265 8fa71211c7ed68e0bb761553c66655b7 157 SUPERFAMILY SSF55961 3 156 3.67E-20 T 13-10-2018 RAM_21265 8fa71211c7ed68e0bb761553c66655b7 157 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 4 152 9.6E-18 T 13-10-2018 IPR019587 Polyketide cyclase/dehydrase RAM_23770 70a4229d0e965da874d34f2660f50afc 473 SMART SM00244 22 180 4.8E-56 T 13-10-2018 IPR001107 Band 7 domain RAM_23770 70a4229d0e965da874d34f2660f50afc 473 ProSitePatterns PS01270 Band 7 protein family signature. 136 164 - T 13-10-2018 IPR018080 Band 7/stomatin-like, conserved site RAM_23770 70a4229d0e965da874d34f2660f50afc 473 PRINTS PR00721 Stomatin signature 156 174 1.1E-34 T 13-10-2018 IPR001972 Stomatin family GO:0016020 RAM_23770 70a4229d0e965da874d34f2660f50afc 473 PRINTS PR00721 Stomatin signature 77 98 1.1E-34 T 13-10-2018 IPR001972 Stomatin family GO:0016020 RAM_23770 70a4229d0e965da874d34f2660f50afc 473 PRINTS PR00721 Stomatin signature 29 51 1.1E-34 T 13-10-2018 IPR001972 Stomatin family GO:0016020 RAM_23770 70a4229d0e965da874d34f2660f50afc 473 PRINTS PR00721 Stomatin signature 132 155 1.1E-34 T 13-10-2018 IPR001972 Stomatin family GO:0016020 RAM_23770 70a4229d0e965da874d34f2660f50afc 473 PRINTS PR00721 Stomatin signature 175 196 1.1E-34 T 13-10-2018 IPR001972 Stomatin family GO:0016020 RAM_23770 70a4229d0e965da874d34f2660f50afc 473 PRINTS PR00721 Stomatin signature 112 129 1.1E-34 T 13-10-2018 IPR001972 Stomatin family GO:0016020 RAM_23770 70a4229d0e965da874d34f2660f50afc 473 SUPERFAMILY SSF117892 53 187 1.16E-39 T 13-10-2018 IPR036013 Band 7/SPFH domain superfamily RAM_23770 70a4229d0e965da874d34f2660f50afc 473 Gene3D G3DSA:3.30.479.30 50 182 4.3E-44 T 13-10-2018 RAM_23770 70a4229d0e965da874d34f2660f50afc 473 Pfam PF01145 SPFH domain / Band 7 family 26 196 5.3E-33 T 13-10-2018 IPR001107 Band 7 domain RAM_06310 9316b31941d76b2cb1cd7ae3600dae5b 457 Pfam PF10103 Zincin-like metallopeptidase 57 410 4.3E-117 T 13-10-2018 IPR018766 Zinicin-like metallopeptidase type 2 RAM_06310 9316b31941d76b2cb1cd7ae3600dae5b 457 SUPERFAMILY SSF55486 56 414 1.1E-112 T 13-10-2018 RAM_06310 9316b31941d76b2cb1cd7ae3600dae5b 457 TIGRFAM TIGR03624 TIGR03624: putative hydrolase 57 414 9.7E-118 T 13-10-2018 IPR018766 Zinicin-like metallopeptidase type 2 RAM_13525 21a4e2a04dc03f58c1ce367d7bced497 542 TIGRFAM TIGR01236 D1pyr5carbox1: 1-pyrroline-5-carboxylate dehydrogenase 11 541 4.2E-239 T 13-10-2018 IPR005931 Delta-1-pyrroline-5-carboxylate dehydrogenase GO:0003842|GO:0010133 KEGG: 00250+1.2.1.88|KEGG: 00330+1.2.1.88|MetaCyc: PWY-6853|Reactome: R-HSA-389661|Reactome: R-HSA-70688 RAM_13525 21a4e2a04dc03f58c1ce367d7bced497 542 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 321 332 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 RAM_13525 21a4e2a04dc03f58c1ce367d7bced497 542 Pfam PF00171 Aldehyde dehydrogenase family 56 522 1.9E-101 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RAM_13525 21a4e2a04dc03f58c1ce367d7bced497 542 Gene3D G3DSA:3.40.309.10 298 495 8.4E-201 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RAM_13525 21a4e2a04dc03f58c1ce367d7bced497 542 Gene3D G3DSA:3.40.605.10 14 527 8.4E-201 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RAM_13525 21a4e2a04dc03f58c1ce367d7bced497 542 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 293 300 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 RAM_13525 21a4e2a04dc03f58c1ce367d7bced497 542 SUPERFAMILY SSF53720 9 527 1.14E-123 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RAM_29245 b95a1285ccbd83345a0ebb24c964fc79 184 Gene3D G3DSA:1.10.357.10 5 184 2.3E-33 T 13-10-2018 RAM_29245 b95a1285ccbd83345a0ebb24c964fc79 184 SUPERFAMILY SSF48498 86 174 4.17E-7 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_29245 b95a1285ccbd83345a0ebb24c964fc79 184 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 61 9.3E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_29245 b95a1285ccbd83345a0ebb24c964fc79 184 SUPERFAMILY SSF46689 3 83 9.23E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_29245 b95a1285ccbd83345a0ebb24c964fc79 184 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 8.7E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_29245 b95a1285ccbd83345a0ebb24c964fc79 184 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 8.7E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_27610 741c85329cd3baacc8ba9b3b85eeb610 325 Pfam PF00005 ABC transporter 41 183 1.4E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_27610 741c85329cd3baacc8ba9b3b85eeb610 325 SUPERFAMILY SSF52540 20 245 3.7E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_27610 741c85329cd3baacc8ba9b3b85eeb610 325 Gene3D G3DSA:3.40.50.300 17 253 2.1E-67 T 13-10-2018 RAM_27610 741c85329cd3baacc8ba9b3b85eeb610 325 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_27610 741c85329cd3baacc8ba9b3b85eeb610 325 SMART SM00382 48 233 6.3E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_13335 0e89542e950d2284b7a31198fb9af91a 482 Gene3D G3DSA:1.10.10.2840 354 479 5.1E-20 T 13-10-2018 RAM_13335 0e89542e950d2284b7a31198fb9af91a 482 Pfam PF13556 PucR C-terminal helix-turn-helix domain 419 476 4.9E-20 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain RAM_13335 0e89542e950d2284b7a31198fb9af91a 482 Pfam PF07905 Purine catabolism regulatory protein-like family 20 117 3.0E-23 T 13-10-2018 IPR012914 Purine catabolism PurC-like domain RAM_04690 1cbeac165aebb4edb0faedca793ff0dd 466 Gene3D G3DSA:3.30.390.30 340 461 7.6E-36 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RAM_04690 1cbeac165aebb4edb0faedca793ff0dd 466 SUPERFAMILY SSF51905 3 336 5.49E-52 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_04690 1cbeac165aebb4edb0faedca793ff0dd 466 Gene3D G3DSA:3.50.50.60 154 272 2.8E-107 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_04690 1cbeac165aebb4edb0faedca793ff0dd 466 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 348 455 1.5E-23 T 13-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RAM_04690 1cbeac165aebb4edb0faedca793ff0dd 466 PIRSF PIRSF000350 1 456 3.6E-76 T 13-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 RAM_04690 1cbeac165aebb4edb0faedca793ff0dd 466 SUPERFAMILY SSF55424 346 460 6.7E-27 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RAM_04690 1cbeac165aebb4edb0faedca793ff0dd 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 1.5E-35 T 13-10-2018 RAM_04690 1cbeac165aebb4edb0faedca793ff0dd 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 292 314 1.5E-35 T 13-10-2018 RAM_04690 1cbeac165aebb4edb0faedca793ff0dd 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 263 279 1.5E-35 T 13-10-2018 RAM_04690 1cbeac165aebb4edb0faedca793ff0dd 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 179 197 1.5E-35 T 13-10-2018 RAM_04690 1cbeac165aebb4edb0faedca793ff0dd 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 140 158 1.5E-35 T 13-10-2018 RAM_04690 1cbeac165aebb4edb0faedca793ff0dd 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 307 314 9.0E-51 T 13-10-2018 RAM_04690 1cbeac165aebb4edb0faedca793ff0dd 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 408 423 9.0E-51 T 13-10-2018 RAM_04690 1cbeac165aebb4edb0faedca793ff0dd 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 179 204 9.0E-51 T 13-10-2018 RAM_04690 1cbeac165aebb4edb0faedca793ff0dd 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 343 364 9.0E-51 T 13-10-2018 RAM_04690 1cbeac165aebb4edb0faedca793ff0dd 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 264 278 9.0E-51 T 13-10-2018 RAM_04690 1cbeac165aebb4edb0faedca793ff0dd 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 143 152 9.0E-51 T 13-10-2018 RAM_04690 1cbeac165aebb4edb0faedca793ff0dd 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 35 50 9.0E-51 T 13-10-2018 RAM_04690 1cbeac165aebb4edb0faedca793ff0dd 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 430 450 9.0E-51 T 13-10-2018 RAM_04690 1cbeac165aebb4edb0faedca793ff0dd 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 3 25 9.0E-51 T 13-10-2018 RAM_04690 1cbeac165aebb4edb0faedca793ff0dd 466 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 327 1.2E-61 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAM_04690 1cbeac165aebb4edb0faedca793ff0dd 466 Gene3D G3DSA:3.50.50.60 4 330 2.8E-107 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_19620 7c52122d1bb479fdb26e4592a0173237 378 Pfam PF02803 Thiolase, C-terminal domain 255 350 6.1E-6 T 13-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 RAM_19620 7c52122d1bb479fdb26e4592a0173237 378 PIRSF PIRSF000429 1 377 1.1E-34 T 13-10-2018 IPR002155 Thiolase GO:0016747 RAM_19620 7c52122d1bb479fdb26e4592a0173237 378 SUPERFAMILY SSF53901 252 356 6.34E-23 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_19620 7c52122d1bb479fdb26e4592a0173237 378 Gene3D G3DSA:3.40.47.10 1 378 1.1E-92 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_19620 7c52122d1bb479fdb26e4592a0173237 378 Pfam PF00108 Thiolase, N-terminal domain 1 165 2.4E-8 T 13-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 RAM_19620 7c52122d1bb479fdb26e4592a0173237 378 SUPERFAMILY SSF53901 1 217 2.77E-35 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_18180 a750b292c217eba52c6d8ef0d848c26f 230 Pfam PF13539 D-alanyl-D-alanine carboxypeptidase 149 229 7.0E-21 T 13-10-2018 IPR039561 Peptidase M15C GO:0008233 RAM_18180 a750b292c217eba52c6d8ef0d848c26f 230 SUPERFAMILY SSF55166 76 228 6.28E-25 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 RAM_18180 a750b292c217eba52c6d8ef0d848c26f 230 Gene3D G3DSA:3.30.1380.10 94 228 4.5E-15 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 RAM_42700 3a50309f9bfc5d9eabe56850d5150180 205 SMART SM00858 48 110 4.4E-6 T 13-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 RAM_42700 3a50309f9bfc5d9eabe56850d5150180 205 Pfam PF08666 SAF domain 51 106 6.6E-5 T 13-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 RAM_37960 8ab8d6318bf1d920cc1d5ec1ceca341a 241 SUPERFAMILY SSF52540 4 220 3.38E-53 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_37960 8ab8d6318bf1d920cc1d5ec1ceca341a 241 SMART SM00382 30 205 5.8E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_37960 8ab8d6318bf1d920cc1d5ec1ceca341a 241 Gene3D G3DSA:3.40.50.300 1 239 9.3E-58 T 13-10-2018 RAM_37960 8ab8d6318bf1d920cc1d5ec1ceca341a 241 Pfam PF00005 ABC transporter 23 158 1.1E-26 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_11400 e71095dc5e4c73ab81db45083b07e5e6 1308 TIGRFAM TIGR03924 T7SS_EccC_a: type VII secretion protein EccCa 13 686 1.3E-253 T 13-10-2018 IPR023836 EccCa-like, Actinobacteria RAM_11400 e71095dc5e4c73ab81db45083b07e5e6 1308 SUPERFAMILY SSF52540 428 655 5.51E-30 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_11400 e71095dc5e4c73ab81db45083b07e5e6 1308 SUPERFAMILY SSF52540 750 1014 6.65E-23 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_11400 e71095dc5e4c73ab81db45083b07e5e6 1308 Gene3D G3DSA:3.40.50.300 1072 1305 6.8E-56 T 13-10-2018 RAM_11400 e71095dc5e4c73ab81db45083b07e5e6 1308 Gene3D G3DSA:3.40.50.300 175 391 5.4E-9 T 13-10-2018 RAM_11400 e71095dc5e4c73ab81db45083b07e5e6 1308 Gene3D G3DSA:3.40.50.300 755 1064 3.5E-81 T 13-10-2018 RAM_11400 e71095dc5e4c73ab81db45083b07e5e6 1308 SMART SM00382 812 990 3.6E-5 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_11400 e71095dc5e4c73ab81db45083b07e5e6 1308 SMART SM00382 1097 1260 18.0 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_11400 e71095dc5e4c73ab81db45083b07e5e6 1308 SMART SM00382 463 643 0.1 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_11400 e71095dc5e4c73ab81db45083b07e5e6 1308 SUPERFAMILY SSF52540 1054 1235 8.5E-8 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_11400 e71095dc5e4c73ab81db45083b07e5e6 1308 Pfam PF01580 FtsK/SpoIIIE family 1089 1175 1.3E-5 T 13-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 RAM_11400 e71095dc5e4c73ab81db45083b07e5e6 1308 Pfam PF01580 FtsK/SpoIIIE family 794 1027 9.3E-47 T 13-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 RAM_11400 e71095dc5e4c73ab81db45083b07e5e6 1308 Pfam PF01580 FtsK/SpoIIIE family 434 562 2.5E-25 T 13-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 RAM_11400 e71095dc5e4c73ab81db45083b07e5e6 1308 TIGRFAM TIGR03925 T7SS_EccC_b: type VII secretion protein EccCb 731 1301 5.8E-224 T 13-10-2018 IPR023837 EccCb-like, Actinobacteria RAM_22245 26ccc0deba582b76f78debf97886e48b 352 Pfam PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) 3 264 9.0E-83 T 13-10-2018 IPR018712 Domain of unknown function DUF2235 RAM_45700 216eff1fe6eda8a6b168b71d0c399200 339 Gene3D G3DSA:3.90.550.10 2 237 4.2E-30 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_45700 216eff1fe6eda8a6b168b71d0c399200 339 Pfam PF00535 Glycosyl transferase family 2 11 178 3.5E-21 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RAM_45700 216eff1fe6eda8a6b168b71d0c399200 339 SUPERFAMILY SSF53448 7 237 1.41E-33 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_24695 605ebc6b63c5f13973aeac29c97737b6 269 Gene3D G3DSA:3.30.450.40 80 259 8.6E-52 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_24695 605ebc6b63c5f13973aeac29c97737b6 269 SUPERFAMILY SSF55781 76 253 5.17E-45 T 13-10-2018 RAM_24695 605ebc6b63c5f13973aeac29c97737b6 269 Gene3D G3DSA:1.10.10.10 6 79 2.5E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_24695 605ebc6b63c5f13973aeac29c97737b6 269 Pfam PF09339 IclR helix-turn-helix domain 13 64 2.5E-17 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RAM_24695 605ebc6b63c5f13973aeac29c97737b6 269 SMART SM00419 27 71 0.0045 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RAM_24695 605ebc6b63c5f13973aeac29c97737b6 269 SMART SM00346 11 99 6.4E-29 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RAM_24695 605ebc6b63c5f13973aeac29c97737b6 269 Pfam PF01614 Bacterial transcriptional regulator 130 250 5.2E-23 T 13-10-2018 IPR014757 Transcription regulator IclR, C-terminal RAM_24695 605ebc6b63c5f13973aeac29c97737b6 269 SUPERFAMILY SSF46785 11 83 1.04E-15 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_20955 47ce2e88c8b1f60948968ae33ad80f78 1091 SUPERFAMILY SSF52058 801 1027 3.3E-16 T 13-10-2018 RAM_20955 47ce2e88c8b1f60948968ae33ad80f78 1091 Gene3D G3DSA:3.40.50.300 261 414 5.3E-11 T 13-10-2018 RAM_20955 47ce2e88c8b1f60948968ae33ad80f78 1091 Gene3D G3DSA:3.80.10.10 791 1056 2.5E-21 T 13-10-2018 IPR032675 Leucine-rich repeat domain superfamily RAM_20955 47ce2e88c8b1f60948968ae33ad80f78 1091 SUPERFAMILY SSF52540 278 408 2.67E-8 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_20955 47ce2e88c8b1f60948968ae33ad80f78 1091 Pfam PF05729 NACHT domain 283 442 2.5E-24 T 13-10-2018 IPR007111 NACHT nucleoside triphosphatase RAM_14055 dceba7745ab7c0781cb4d73423d09279 474 Gene3D G3DSA:3.40.50.150 178 473 1.2E-53 T 13-10-2018 RAM_14055 dceba7745ab7c0781cb4d73423d09279 474 SUPERFAMILY SSF48013 32 187 8.01E-33 T 13-10-2018 IPR035926 NusB-like superfamily RAM_14055 dceba7745ab7c0781cb4d73423d09279 474 SUPERFAMILY SSF53335 176 473 3.84E-50 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_14055 dceba7745ab7c0781cb4d73423d09279 474 Pfam PF01189 16S rRNA methyltransferase RsmB/F 288 472 5.6E-46 T 13-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 RAM_14055 dceba7745ab7c0781cb4d73423d09279 474 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 292 302 1.7E-20 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase RAM_14055 dceba7745ab7c0781cb4d73423d09279 474 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 259 273 1.7E-20 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase RAM_14055 dceba7745ab7c0781cb4d73423d09279 474 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 456 473 1.7E-20 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase RAM_14055 dceba7745ab7c0781cb4d73423d09279 474 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 405 421 1.7E-20 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase RAM_14055 dceba7745ab7c0781cb4d73423d09279 474 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 355 367 1.7E-20 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase RAM_14055 dceba7745ab7c0781cb4d73423d09279 474 Pfam PF01029 NusB family 32 154 3.1E-26 T 13-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 RAM_14055 dceba7745ab7c0781cb4d73423d09279 474 Gene3D G3DSA:1.10.940.10 29 171 1.9E-41 T 13-10-2018 IPR035926 NusB-like superfamily RAM_01760 2f194dc050c288a1fa0fd720aa6fd3f6 407 Gene3D G3DSA:3.30.450.40 20 206 4.5E-53 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_01760 2f194dc050c288a1fa0fd720aa6fd3f6 407 Pfam PF01590 GAF domain 98 204 3.9E-7 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_37105 8298f08d7903cbb48a3a1f3137655330 54 SUPERFAMILY SSF52922 1 53 1.26E-5 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RAM_37105 8298f08d7903cbb48a3a1f3137655330 54 Gene3D G3DSA:3.40.50.920 1 54 7.6E-7 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RAM_22430 37433412fc2beb6391079cbdbb26dd29 499 Gene3D G3DSA:3.40.50.10940 2 175 4.4E-77 T 13-10-2018 IPR038583 L-arabinose isomerase, N-terminal domain superfamily KEGG: 00040+5.3.1.4 RAM_22430 37433412fc2beb6391079cbdbb26dd29 499 ProDom PD018364 ISOMERASE L-ARABINOSE ARABINOSE METABOLISM CARBOHYDRATE CATABOLISM ARAA 8 302 2.0E-114 T 13-10-2018 IPR003762 L-arabinose isomerase GO:0008733 KEGG: 00040+5.3.1.4 RAM_22430 37433412fc2beb6391079cbdbb26dd29 499 Pfam PF11762 L-arabinose isomerase C-terminal domain 360 473 8.9E-48 T 13-10-2018 IPR024664 L-arabinose isomerase, C-terminal KEGG: 00040+5.3.1.4 RAM_22430 37433412fc2beb6391079cbdbb26dd29 499 SUPERFAMILY SSF53743 1 323 3.66E-113 T 13-10-2018 IPR009015 L-fucose isomerase, N-terminal/central domain superfamily GO:0005737|GO:0005996|GO:0016861 RAM_22430 37433412fc2beb6391079cbdbb26dd29 499 PIRSF PIRSF001478 1 497 3.2E-226 T 13-10-2018 IPR003762 L-arabinose isomerase GO:0008733 KEGG: 00040+5.3.1.4 RAM_22430 37433412fc2beb6391079cbdbb26dd29 499 SUPERFAMILY SSF50443 327 495 1.23E-68 T 13-10-2018 IPR004216 L-fucose/L-arabinose isomerase, C-terminal RAM_22430 37433412fc2beb6391079cbdbb26dd29 499 Hamap MF_00519 L-arabinose isomerase [araA]. 1 474 62.289 T 13-10-2018 IPR003762 L-arabinose isomerase GO:0008733 KEGG: 00040+5.3.1.4 RAM_22430 37433412fc2beb6391079cbdbb26dd29 499 Pfam PF02610 L-arabinose isomerase 6 357 2.3E-168 T 13-10-2018 IPR003762 L-arabinose isomerase GO:0008733 KEGG: 00040+5.3.1.4 RAM_47445 6ed83ae9179254405aff63b0dfeb98c2 281 Pfam PF00296 Luciferase-like monooxygenase 11 237 8.1E-28 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_47445 6ed83ae9179254405aff63b0dfeb98c2 281 Gene3D G3DSA:3.20.20.30 5 281 2.2E-45 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_47445 6ed83ae9179254405aff63b0dfeb98c2 281 TIGRFAM TIGR03621 F420_MSMEG_2516: probable F420-dependent oxidoreductase, MSMEG_2516 family 4 281 6.7E-99 T 13-10-2018 IPR019923 Luciferase-like, F420-dependent oxidoreductase, MSMEG2516, predicted RAM_47445 6ed83ae9179254405aff63b0dfeb98c2 281 SUPERFAMILY SSF51679 7 279 3.4E-46 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_14730 51837134ea45c47ab588a72a4d368b44 320 Pfam PF14226 non-haem dioxygenase in morphine synthesis N-terminal 5 130 6.0E-27 T 13-10-2018 IPR026992 Non-haem dioxygenase N-terminal domain RAM_14730 51837134ea45c47ab588a72a4d368b44 320 Gene3D G3DSA:2.60.120.330 2 320 4.7E-88 T 13-10-2018 IPR027443 Isopenicillin N synthase-like RAM_14730 51837134ea45c47ab588a72a4d368b44 320 Pfam PF03171 2OG-Fe(II) oxygenase superfamily 191 282 1.4E-14 T 13-10-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 RAM_14730 51837134ea45c47ab588a72a4d368b44 320 SUPERFAMILY SSF51197 3 315 4.88E-77 T 13-10-2018 RAM_13945 3111b8a105efe90d4939ce227ad718be 132 SUPERFAMILY SSF54593 11 131 7.52E-19 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_13945 3111b8a105efe90d4939ce227ad718be 132 Gene3D G3DSA:3.10.180.10 3 130 6.4E-23 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_13945 3111b8a105efe90d4939ce227ad718be 132 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 10 128 1.4E-8 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RAM_29655 a87ba61a169f02ad2dd661f15eb83ceb 657 Pfam PF12770 CHAT domain 481 616 2.7E-10 T 13-10-2018 IPR024983 CHAT domain RAM_21110 3a06c362778b31b707eb775835c58813 502 Gene3D G3DSA:1.20.1720.10 19 233 2.0E-55 T 13-10-2018 RAM_21110 3a06c362778b31b707eb775835c58813 502 Gene3D G3DSA:1.20.1250.20 276 500 2.0E-13 T 13-10-2018 RAM_21110 3a06c362778b31b707eb775835c58813 502 SUPERFAMILY SSF103473 18 499 1.23E-66 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_21110 3a06c362778b31b707eb775835c58813 502 PRINTS PR01036 Tetracycline resistance protein TetB signature 267 292 2.9E-6 T 13-10-2018 RAM_21110 3a06c362778b31b707eb775835c58813 502 PRINTS PR01036 Tetracycline resistance protein TetB signature 81 103 2.9E-6 T 13-10-2018 RAM_21110 3a06c362778b31b707eb775835c58813 502 PRINTS PR01036 Tetracycline resistance protein TetB signature 405 424 2.9E-6 T 13-10-2018 RAM_21110 3a06c362778b31b707eb775835c58813 502 PRINTS PR01036 Tetracycline resistance protein TetB signature 142 166 2.9E-6 T 13-10-2018 RAM_21110 3a06c362778b31b707eb775835c58813 502 Pfam PF07690 Major Facilitator Superfamily 24 415 3.2E-49 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_26625 8475325a85dece5714cd33ee356c7218 497 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 55 215 2.4E-22 T 13-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like RAM_05340 5670d53b254067e2a07f112acce29610 281 SUPERFAMILY SSF53448 9 244 6.88E-54 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_05340 5670d53b254067e2a07f112acce29610 281 Gene3D G3DSA:3.90.550.10 1 279 2.5E-110 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_05340 5670d53b254067e2a07f112acce29610 281 Pfam PF00535 Glycosyl transferase family 2 10 117 7.1E-10 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RAM_44765 fbe04d97463e2ce86b8e48652fae355b 217 Gene3D G3DSA:2.60.40.10 113 217 5.3E-11 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_26510 48a6196493ec839cc308e6de668cfd14 314 Pfam PF01068 ATP dependent DNA ligase domain 17 194 3.0E-33 T 13-10-2018 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 RAM_26510 48a6196493ec839cc308e6de668cfd14 314 SUPERFAMILY SSF56091 4 196 8.15E-47 T 13-10-2018 RAM_26510 48a6196493ec839cc308e6de668cfd14 314 Gene3D G3DSA:3.30.1490.70 15 192 2.4E-44 T 13-10-2018 RAM_26510 48a6196493ec839cc308e6de668cfd14 314 TIGRFAM TIGR02779 NHEJ_ligase_lig: DNA ligase D, ligase domain 9 310 9.1E-88 T 13-10-2018 IPR014146 DNA ligase D, ligase domain RAM_26510 48a6196493ec839cc308e6de668cfd14 314 SUPERFAMILY SSF50249 198 312 5.57E-30 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_26510 48a6196493ec839cc308e6de668cfd14 314 Gene3D G3DSA:2.40.50.140 197 312 1.1E-40 T 13-10-2018 RAM_26510 48a6196493ec839cc308e6de668cfd14 314 ProSitePatterns PS00697 ATP-dependent DNA ligase AMP-binding site. 27 35 - T 13-10-2018 IPR016059 DNA ligase, ATP-dependent, conserved site GO:0003909|GO:0051103 RAM_26510 48a6196493ec839cc308e6de668cfd14 314 Gene3D G3DSA:3.30.470.30 32 151 2.4E-44 T 13-10-2018 RAM_26510 48a6196493ec839cc308e6de668cfd14 314 Pfam PF04679 ATP dependent DNA ligase C terminal region 213 304 3.8E-28 T 13-10-2018 IPR012309 DNA ligase, ATP-dependent, C-terminal GO:0003910|GO:0006281|GO:0006310 RAM_32450 ee9b52d4852fc6140e86049c5cc04629 329 Pfam PF01368 DHH family 22 164 1.1E-11 T 13-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 RAM_32450 ee9b52d4852fc6140e86049c5cc04629 329 Pfam PF02272 DHHA1 domain 239 323 4.8E-11 T 13-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 RAM_32450 ee9b52d4852fc6140e86049c5cc04629 329 Gene3D G3DSA:3.10.310.30 202 324 7.5E-36 T 13-10-2018 RAM_32450 ee9b52d4852fc6140e86049c5cc04629 329 SUPERFAMILY SSF64182 22 323 2.09E-54 T 13-10-2018 IPR038763 DHH phosphoesterase superfamily RAM_32450 ee9b52d4852fc6140e86049c5cc04629 329 Gene3D G3DSA:3.90.1640.10 3 201 1.1E-48 T 13-10-2018 RAM_19400 1ca6f186615c8df049ab6ac112acb79b 96 SUPERFAMILY SSF46785 7 91 1.06E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_19400 1ca6f186615c8df049ab6ac112acb79b 96 Gene3D G3DSA:1.10.10.10 2 93 3.3E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_19400 1ca6f186615c8df049ab6ac112acb79b 96 Pfam PF01638 HxlR-like helix-turn-helix 4 78 1.9E-19 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type RAM_13265 45c44b779dd6c2493af58b2a774625a3 240 PIRSF PIRSF010219 2 222 4.0E-74 T 13-10-2018 IPR016566 Uncharacterised conserved protein UCP010219 RAM_13265 45c44b779dd6c2493af58b2a774625a3 240 Pfam PF11361 Protein of unknown function (DUF3159) 24 208 1.6E-66 T 13-10-2018 IPR016566 Uncharacterised conserved protein UCP010219 RAM_21850 7a8ca37177d4669e2eab6e51de9f98d3 337 SUPERFAMILY SSF56349 81 313 1.5E-54 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RAM_21850 7a8ca37177d4669e2eab6e51de9f98d3 337 Gene3D G3DSA:3.30.66.10 7 92 1.1E-31 T 13-10-2018 IPR035447 DNA topoisomerase I, N-terminal RAM_21850 7a8ca37177d4669e2eab6e51de9f98d3 337 Pfam PF01028 Eukaryotic DNA topoisomerase I, catalytic core 85 289 4.9E-19 T 13-10-2018 IPR013500 DNA topoisomerase I, catalytic core, eukaryotic-type GO:0003677|GO:0003917|GO:0006265 RAM_21850 7a8ca37177d4669e2eab6e51de9f98d3 337 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 125 144 5.7E-7 T 13-10-2018 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 RAM_21850 7a8ca37177d4669e2eab6e51de9f98d3 337 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 148 162 5.7E-7 T 13-10-2018 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 RAM_21850 7a8ca37177d4669e2eab6e51de9f98d3 337 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 286 297 5.7E-7 T 13-10-2018 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 RAM_21850 7a8ca37177d4669e2eab6e51de9f98d3 337 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 235 249 5.7E-7 T 13-10-2018 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 RAM_21850 7a8ca37177d4669e2eab6e51de9f98d3 337 Gene3D G3DSA:1.10.132.120 93 317 1.5E-66 T 13-10-2018 RAM_21850 7a8ca37177d4669e2eab6e51de9f98d3 337 SUPERFAMILY SSF55869 25 86 1.31E-21 T 13-10-2018 IPR035447 DNA topoisomerase I, N-terminal RAM_21850 7a8ca37177d4669e2eab6e51de9f98d3 337 Gene3D G3DSA:3.90.15.10 116 236 1.5E-66 T 13-10-2018 IPR014711 DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type GO:0003677|GO:0003917|GO:0006265 RAM_17315 f20c23c87088a5983e9d6282883e98b9 52 Pfam PF01402 Ribbon-helix-helix protein, copG family 9 45 2.1E-5 T 13-10-2018 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 RAM_17315 f20c23c87088a5983e9d6282883e98b9 52 SUPERFAMILY SSF47598 4 48 3.06E-7 T 13-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 RAM_07015 331af2f43ae82d924a05aa830a370271 696 Pfam PF05729 NACHT domain 126 302 3.8E-6 T 13-10-2018 IPR007111 NACHT nucleoside triphosphatase RAM_07015 331af2f43ae82d924a05aa830a370271 696 SUPERFAMILY SSF52540 123 294 4.17E-6 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_35195 0b29cc6fc2e8a86388978f88f1fef92a 570 Gene3D G3DSA:3.90.226.10 54 312 3.9E-82 T 13-10-2018 RAM_35195 0b29cc6fc2e8a86388978f88f1fef92a 570 Gene3D G3DSA:3.90.226.10 319 570 3.5E-86 T 13-10-2018 RAM_35195 0b29cc6fc2e8a86388978f88f1fef92a 570 Pfam PF01039 Carboxyl transferase domain 83 567 8.5E-171 T 13-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 RAM_35195 0b29cc6fc2e8a86388978f88f1fef92a 570 SUPERFAMILY SSF52096 63 310 2.21E-70 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_35195 0b29cc6fc2e8a86388978f88f1fef92a 570 SUPERFAMILY SSF52096 320 570 4.84E-80 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_35335 b2ebb033d9763752ff8c44d945012640 385 Gene3D G3DSA:3.30.565.10 249 374 3.7E-21 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_35335 b2ebb033d9763752ff8c44d945012640 385 SUPERFAMILY SSF55874 259 374 5.19E-9 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_35335 b2ebb033d9763752ff8c44d945012640 385 Pfam PF07730 Histidine kinase 185 249 3.4E-14 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_41230 b883307a034795adecf9e98b1d2602bf 338 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 118 336 2.4E-39 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_41230 b883307a034795adecf9e98b1d2602bf 338 SUPERFAMILY SSF161098 94 319 8.94E-17 T 13-10-2018 IPR035906 MetI-like superfamily RAM_41230 b883307a034795adecf9e98b1d2602bf 338 Gene3D G3DSA:1.10.3720.10 93 329 2.0E-20 T 13-10-2018 IPR035906 MetI-like superfamily RAM_33460 e5318591d76c0984fd98df590ce70a29 221 Gene3D G3DSA:1.10.3210.10 20 173 4.4E-13 T 13-10-2018 RAM_33460 e5318591d76c0984fd98df590ce70a29 221 SUPERFAMILY SSF109604 33 148 1.18E-16 T 13-10-2018 RAM_33460 e5318591d76c0984fd98df590ce70a29 221 Pfam PF01966 HD domain 37 134 5.5E-8 T 13-10-2018 IPR006674 HD domain RAM_30450 43b02b0f26b158a8a7e06b8c422f25b0 247 SUPERFAMILY SSF52467 4 245 6.95E-73 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily RAM_30450 43b02b0f26b158a8a7e06b8c422f25b0 247 Gene3D G3DSA:3.40.50.1220 14 241 1.1E-70 T 13-10-2018 RAM_30450 43b02b0f26b158a8a7e06b8c422f25b0 247 Gene3D G3DSA:3.30.1600.10 29 167 1.1E-70 T 13-10-2018 IPR026591 Sirtuin, catalytic core small domain superfamily RAM_30450 43b02b0f26b158a8a7e06b8c422f25b0 247 Pfam PF02146 Sir2 family 20 197 7.4E-43 T 13-10-2018 IPR003000 Sirtuin family GO:0070403 RAM_16080 2cf5e710bb905a75047b466a8c435708 300 ProSitePatterns PS00211 ABC transporters family signature. 129 143 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_16080 2cf5e710bb905a75047b466a8c435708 300 SMART SM00382 27 205 8.3E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_16080 2cf5e710bb905a75047b466a8c435708 300 Gene3D G3DSA:3.40.50.300 1 230 2.3E-57 T 13-10-2018 RAM_16080 2cf5e710bb905a75047b466a8c435708 300 Pfam PF00005 ABC transporter 19 157 3.0E-24 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_16080 2cf5e710bb905a75047b466a8c435708 300 SUPERFAMILY SSF52540 2 223 8.4E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_40470 be1917b0746399bc95397605487cec1e 154 Pfam PF14081 Domain of unknown function (DUF4262) 21 139 1.7E-31 T 13-10-2018 IPR025358 Protein of unknown function DUF4262 RAM_17510 557b609c9ba0f47e00fd7e8bd3724180 129 SUPERFAMILY SSF54427 3 105 2.22E-23 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_17510 557b609c9ba0f47e00fd7e8bd3724180 129 Gene3D G3DSA:3.10.450.50 1 125 2.1E-43 T 13-10-2018 RAM_17510 557b609c9ba0f47e00fd7e8bd3724180 129 Pfam PF12680 SnoaL-like domain 4 98 8.4E-11 T 13-10-2018 IPR037401 SnoaL-like domain RAM_40990 f53749a056de20fbc468a12b38bc8e16 202 SUPERFAMILY SSF53474 4 199 2.47E-18 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_40990 f53749a056de20fbc468a12b38bc8e16 202 Gene3D G3DSA:3.40.50.1820 24 197 7.2E-18 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_28505 ba9f80d86392d1edad950a9f3798215d 144 SUPERFAMILY SSF52091 28 134 2.35E-15 T 13-10-2018 IPR036513 STAS domain superfamily RAM_28505 ba9f80d86392d1edad950a9f3798215d 144 Pfam PF13466 STAS domain 43 118 1.2E-9 T 13-10-2018 IPR002645 STAS domain RAM_28505 ba9f80d86392d1edad950a9f3798215d 144 Gene3D G3DSA:3.30.750.24 24 137 6.2E-25 T 13-10-2018 IPR036513 STAS domain superfamily RAM_34560 9596487e9802f57f56c7c1da41029c03 306 Gene3D G3DSA:3.30.565.10 185 306 3.5E-19 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_34560 9596487e9802f57f56c7c1da41029c03 306 Pfam PF14417 MEDS: MEthanogen/methylotroph, DcmR Sensory domain 9 152 9.4E-29 T 13-10-2018 IPR025847 MEDS domain RAM_34560 9596487e9802f57f56c7c1da41029c03 306 Pfam PF13581 Histidine kinase-like ATPase domain 192 302 1.8E-10 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_34560 9596487e9802f57f56c7c1da41029c03 306 SUPERFAMILY SSF55874 215 300 2.05E-5 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_39820 5c736accb0acb11b280c912f6894bb14 565 Gene3D G3DSA:1.20.1730.10 34 536 2.7E-109 T 13-10-2018 IPR038377 Sodium/glucose symporter superfamily RAM_39820 5c736accb0acb11b280c912f6894bb14 565 Pfam PF00474 Sodium:solute symporter family 45 465 7.6E-50 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 RAM_39820 5c736accb0acb11b280c912f6894bb14 565 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 160 185 - T 13-10-2018 IPR018212 Sodium/solute symporter, conserved site RAM_39820 5c736accb0acb11b280c912f6894bb14 565 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 45 465 5.7E-76 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 RAM_26665 3358bc4f247bc31275d5445b4e81743c 181 Pfam PF02575 YbaB/EbfC DNA-binding family 33 109 9.4E-11 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family RAM_26665 3358bc4f247bc31275d5445b4e81743c 181 SUPERFAMILY SSF82607 33 111 1.83E-8 T 13-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily RAM_26665 3358bc4f247bc31275d5445b4e81743c 181 Gene3D G3DSA:3.30.1310.10 20 114 1.5E-6 T 13-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily RAM_09660 856af035030bfdf1255513966fd2783c 166 Pfam PF11937 Protein of unknown function (DUF3455) 37 163 3.0E-21 T 13-10-2018 IPR021851 Protein of unknown function DUF3455 RAM_22105 b4646a56c60fd397cdc45d71173e6b1f 200 SUPERFAMILY SSF48498 83 194 7.87E-17 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_22105 b4646a56c60fd397cdc45d71173e6b1f 200 Gene3D G3DSA:1.10.357.10 4 191 2.7E-35 T 13-10-2018 RAM_22105 b4646a56c60fd397cdc45d71173e6b1f 200 SUPERFAMILY SSF46689 5 83 2.67E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_22105 b4646a56c60fd397cdc45d71173e6b1f 200 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 63 1.9E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_33920 d0dac678fb3ef0b73b24f6db1b2a995a 245 Pfam PF09323 Domain of unknown function (DUF1980) 8 105 1.4E-8 T 13-10-2018 IPR015402 Protein of unknown function DUF1980 RAM_33920 d0dac678fb3ef0b73b24f6db1b2a995a 245 TIGRFAM TIGR03943 TIGR03943: TIGR03943 family protein 23 243 1.2E-50 T 13-10-2018 IPR015402 Protein of unknown function DUF1980 RAM_03235 0b800b30680d0d57137ae2a8b47a68f7 502 Gene3D G3DSA:1.20.1250.20 274 502 4.5E-12 T 13-10-2018 RAM_03235 0b800b30680d0d57137ae2a8b47a68f7 502 SUPERFAMILY SSF103473 10 495 3.14E-63 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_03235 0b800b30680d0d57137ae2a8b47a68f7 502 Pfam PF07690 Major Facilitator Superfamily 23 416 5.6E-50 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_03235 0b800b30680d0d57137ae2a8b47a68f7 502 Gene3D G3DSA:1.20.1720.10 17 226 4.6E-49 T 13-10-2018 RAM_03235 0b800b30680d0d57137ae2a8b47a68f7 502 PRINTS PR01036 Tetracycline resistance protein TetB signature 21 45 1.7E-7 T 13-10-2018 RAM_03235 0b800b30680d0d57137ae2a8b47a68f7 502 PRINTS PR01036 Tetracycline resistance protein TetB signature 112 132 1.7E-7 T 13-10-2018 RAM_03235 0b800b30680d0d57137ae2a8b47a68f7 502 PRINTS PR01036 Tetracycline resistance protein TetB signature 142 166 1.7E-7 T 13-10-2018 RAM_03235 0b800b30680d0d57137ae2a8b47a68f7 502 PRINTS PR01036 Tetracycline resistance protein TetB signature 407 426 1.7E-7 T 13-10-2018 RAM_28930 9e358c0ab5540e2cd42beeb4a5db7848 206 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 55 162 2.4E-7 T 13-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain RAM_28930 9e358c0ab5540e2cd42beeb4a5db7848 206 Gene3D G3DSA:3.40.50.2300 36 164 9.0E-28 T 13-10-2018 RAM_28930 9e358c0ab5540e2cd42beeb4a5db7848 206 SUPERFAMILY SSF53822 51 164 1.77E-14 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_20870 f64081b6d49d1b8b688762b2c29bc824 162 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 26 158 5.1E-24 T 13-10-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like RAM_20870 f64081b6d49d1b8b688762b2c29bc824 162 SUPERFAMILY SSF55961 14 160 8.62E-44 T 13-10-2018 RAM_20870 f64081b6d49d1b8b688762b2c29bc824 162 Gene3D G3DSA:3.30.530.20 1 162 2.2E-44 T 13-10-2018 IPR023393 START-like domain superfamily RAM_30045 ab2234fd2e06a9a69dc0ea6b1282b63a 409 SMART SM00507 313 365 1.6E-11 T 13-10-2018 IPR003615 HNH nuclease RAM_30045 ab2234fd2e06a9a69dc0ea6b1282b63a 409 Pfam PF01844 HNH endonuclease 330 369 5.7E-6 T 13-10-2018 IPR002711 HNH endonuclease GO:0003676|GO:0004519 RAM_30045 ab2234fd2e06a9a69dc0ea6b1282b63a 409 Pfam PF02720 Domain of unknown function (DUF222) 20 322 9.6E-39 T 13-10-2018 IPR003870 Domain of unknown function DUF222 RAM_31795 b52dcec6eee06bc1261bb57f18a5e8fa 139 Pfam PF12770 CHAT domain 4 122 2.5E-17 T 13-10-2018 IPR024983 CHAT domain RAM_02820 b2cd79afab37e35e0167dca24d00dc15 651 Pfam PF02706 Chain length determinant protein 14 93 6.0E-9 T 13-10-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 RAM_15800 74da7dc4f4faec5294e4fe8d388a96d3 401 Gene3D G3DSA:1.10.630.10 2 401 7.8E-123 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_15800 74da7dc4f4faec5294e4fe8d388a96d3 401 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 341 350 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RAM_15800 74da7dc4f4faec5294e4fe8d388a96d3 401 SUPERFAMILY SSF48264 12 400 6.42E-91 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_15800 74da7dc4f4faec5294e4fe8d388a96d3 401 PRINTS PR00359 B-class P450 signature 290 317 6.7E-48 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_15800 74da7dc4f4faec5294e4fe8d388a96d3 401 PRINTS PR00359 B-class P450 signature 192 214 6.7E-48 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_15800 74da7dc4f4faec5294e4fe8d388a96d3 401 PRINTS PR00359 B-class P450 signature 318 333 6.7E-48 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_15800 74da7dc4f4faec5294e4fe8d388a96d3 401 PRINTS PR00359 B-class P450 signature 273 284 6.7E-48 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_15800 74da7dc4f4faec5294e4fe8d388a96d3 401 PRINTS PR00359 B-class P450 signature 348 359 6.7E-48 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_15800 74da7dc4f4faec5294e4fe8d388a96d3 401 PRINTS PR00359 B-class P450 signature 339 348 6.7E-48 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_15800 74da7dc4f4faec5294e4fe8d388a96d3 401 PRINTS PR00359 B-class P450 signature 126 142 6.7E-48 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_15800 74da7dc4f4faec5294e4fe8d388a96d3 401 PRINTS PR00359 B-class P450 signature 80 91 6.7E-48 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_15800 74da7dc4f4faec5294e4fe8d388a96d3 401 PRINTS PR00359 B-class P450 signature 143 158 6.7E-48 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_15800 74da7dc4f4faec5294e4fe8d388a96d3 401 Pfam PF00067 Cytochrome P450 271 377 3.5E-18 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_15800 74da7dc4f4faec5294e4fe8d388a96d3 401 Pfam PF00067 Cytochrome P450 40 265 3.4E-6 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_13840 fce0c78b3734c2f773a91a798ce41755 311 Gene3D G3DSA:3.40.50.720 2 303 2.1E-121 T 13-10-2018 RAM_13840 fce0c78b3734c2f773a91a798ce41755 311 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 19 305 3.0E-11 T 13-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 RAM_13840 fce0c78b3734c2f773a91a798ce41755 311 SUPERFAMILY SSF52283 1 119 6.59E-21 T 13-10-2018 RAM_13840 fce0c78b3734c2f773a91a798ce41755 311 SUPERFAMILY SSF51735 101 279 1.01E-55 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_13840 fce0c78b3734c2f773a91a798ce41755 311 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 218 234 - T 13-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site RAM_13840 fce0c78b3734c2f773a91a798ce41755 311 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 107 279 1.5E-57 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 RAM_13840 fce0c78b3734c2f773a91a798ce41755 311 Gene3D G3DSA:3.40.50.720 100 295 2.1E-121 T 13-10-2018 RAM_38740 d903211a8300c9c44232d2e2d606ede8 526 SUPERFAMILY SSF53300 322 516 1.38E-20 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RAM_38740 d903211a8300c9c44232d2e2d606ede8 526 SMART SM00327 320 514 2.1E-13 T 13-10-2018 IPR002035 von Willebrand factor, type A RAM_38740 d903211a8300c9c44232d2e2d606ede8 526 Gene3D G3DSA:3.40.190.10 52 275 4.2E-5 T 13-10-2018 RAM_38740 d903211a8300c9c44232d2e2d606ede8 526 Pfam PF13531 Bacterial extracellular solute-binding protein 51 276 7.8E-24 T 13-10-2018 RAM_38740 d903211a8300c9c44232d2e2d606ede8 526 Pfam PF00092 von Willebrand factor type A domain 325 511 1.5E-10 T 13-10-2018 IPR002035 von Willebrand factor, type A RAM_38740 d903211a8300c9c44232d2e2d606ede8 526 Gene3D G3DSA:3.40.50.410 323 518 3.9E-29 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RAM_38740 d903211a8300c9c44232d2e2d606ede8 526 Gene3D G3DSA:3.40.190.10 130 236 4.2E-5 T 13-10-2018 RAM_38740 d903211a8300c9c44232d2e2d606ede8 526 SUPERFAMILY SSF53850 50 281 8.45E-14 T 13-10-2018 RAM_14795 86cad3d339d418c6ca85d11a161504d0 204 ProSitePatterns PS01081 TetR-type HTH domain signature. 30 60 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RAM_14795 86cad3d339d418c6ca85d11a161504d0 204 SUPERFAMILY SSF46689 6 78 1.56E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_14795 86cad3d339d418c6ca85d11a161504d0 204 Gene3D G3DSA:1.10.10.60 5 54 9.6E-24 T 13-10-2018 RAM_14795 86cad3d339d418c6ca85d11a161504d0 204 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 64 9.7E-15 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_14795 86cad3d339d418c6ca85d11a161504d0 204 Gene3D G3DSA:1.10.357.10 56 193 5.8E-25 T 13-10-2018 RAM_14795 86cad3d339d418c6ca85d11a161504d0 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 8.8E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_14795 86cad3d339d418c6ca85d11a161504d0 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 8.8E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_25320 1f400c45f5dcbe6fe2b15efd33f9be23 347 Pfam PF01595 Domain of unknown function DUF21 9 202 1.1E-42 T 13-10-2018 IPR002550 CNNM, transmembrane domain RAM_25320 1f400c45f5dcbe6fe2b15efd33f9be23 347 SUPERFAMILY SSF54631 213 342 7.71E-22 T 13-10-2018 RAM_25320 1f400c45f5dcbe6fe2b15efd33f9be23 347 Pfam PF00571 CBS domain 218 271 2.6E-6 T 13-10-2018 IPR000644 CBS domain RAM_25320 1f400c45f5dcbe6fe2b15efd33f9be23 347 Gene3D G3DSA:3.10.580.10 199 344 4.8E-27 T 13-10-2018 RAM_14740 a623ef907eda6ed68073c103eed4b245 318 Pfam PF13280 WYL domain 141 313 1.8E-32 T 13-10-2018 IPR026881 WYL domain RAM_14740 a623ef907eda6ed68073c103eed4b245 318 SUPERFAMILY SSF46785 4 63 1.04E-9 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_14740 a623ef907eda6ed68073c103eed4b245 318 Gene3D G3DSA:1.10.10.10 1 65 2.2E-13 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_14740 a623ef907eda6ed68073c103eed4b245 318 PIRSF PIRSF016838 2 317 2.1E-22 T 13-10-2018 IPR028349 Protein PafC RAM_14740 a623ef907eda6ed68073c103eed4b245 318 Pfam PF08279 HTH domain 7 62 1.4E-14 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 RAM_27695 336483fadaa1068330ce9a9fe058846a 81 Pfam PF00550 Phosphopantetheine attachment site 21 74 1.1E-7 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_27695 336483fadaa1068330ce9a9fe058846a 81 ProSitePatterns PS00012 Phosphopantetheine attachment site. 33 48 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_27695 336483fadaa1068330ce9a9fe058846a 81 SUPERFAMILY SSF47336 9 76 4.45E-11 T 13-10-2018 IPR036736 ACP-like superfamily RAM_27695 336483fadaa1068330ce9a9fe058846a 81 Gene3D G3DSA:1.10.1200.10 1 78 5.8E-15 T 13-10-2018 IPR036736 ACP-like superfamily RAM_11205 d9903fed22fac404e01581c2ef56678b 204 SUPERFAMILY SSF81452 8 203 3.79E-55 T 13-10-2018 IPR035973 Cytochrome c oxidase subunit III-like superfamily GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_11205 d9903fed22fac404e01581c2ef56678b 204 Gene3D G3DSA:1.20.120.80 16 204 2.8E-53 T 13-10-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_11205 d9903fed22fac404e01581c2ef56678b 204 Pfam PF00510 Cytochrome c oxidase subunit III 18 202 2.3E-25 T 13-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RAM_16700 b1374da20f0ee4d130956967a649d97f 168 SUPERFAMILY SSF82199 19 130 3.14E-13 T 13-10-2018 RAM_16700 b1374da20f0ee4d130956967a649d97f 168 Gene3D G3DSA:2.170.270.10 5 136 3.3E-12 T 13-10-2018 RAM_44340 86e3c95464f4f3a9d32dd6e29d86359b 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 9.0E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_44340 86e3c95464f4f3a9d32dd6e29d86359b 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 9.0E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_44340 86e3c95464f4f3a9d32dd6e29d86359b 187 Gene3D G3DSA:1.10.357.10 1 187 1.8E-49 T 13-10-2018 RAM_44340 86e3c95464f4f3a9d32dd6e29d86359b 187 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 55 2.3E-16 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_44340 86e3c95464f4f3a9d32dd6e29d86359b 187 SUPERFAMILY SSF46689 8 56 2.9E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_07485 77367ef9a55f35bec084a79aa9585601 358 Gene3D G3DSA:3.40.190.10 58 113 1.6E-5 T 13-10-2018 RAM_23115 86c0c37bac3d4561f805902006b8f29c 505 Gene3D G3DSA:3.40.50.300 2 259 4.2E-57 T 13-10-2018 RAM_23115 86c0c37bac3d4561f805902006b8f29c 505 Pfam PF00005 ABC transporter 277 430 1.8E-20 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_23115 86c0c37bac3d4561f805902006b8f29c 505 Gene3D G3DSA:3.40.50.300 268 501 2.6E-47 T 13-10-2018 RAM_23115 86c0c37bac3d4561f805902006b8f29c 505 SUPERFAMILY SSF52540 275 492 2.21E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_23115 86c0c37bac3d4561f805902006b8f29c 505 Pfam PF00005 ABC transporter 29 177 8.5E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_23115 86c0c37bac3d4561f805902006b8f29c 505 ProSitePatterns PS00211 ABC transporters family signature. 403 417 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_23115 86c0c37bac3d4561f805902006b8f29c 505 SUPERFAMILY SSF52540 10 236 2.22E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_23115 86c0c37bac3d4561f805902006b8f29c 505 SMART SM00382 285 479 1.5E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_23115 86c0c37bac3d4561f805902006b8f29c 505 SMART SM00382 36 219 1.5E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_20675 242ec1f0588b181abd28acf5e02d71fe 205 Gene3D G3DSA:3.40.50.720 3 202 1.3E-25 T 13-10-2018 RAM_20675 242ec1f0588b181abd28acf5e02d71fe 205 Pfam PF13460 NAD(P)H-binding 11 193 4.4E-25 T 13-10-2018 IPR016040 NAD(P)-binding domain RAM_20675 242ec1f0588b181abd28acf5e02d71fe 205 SUPERFAMILY SSF51735 3 200 2.68E-22 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_40005 639e6b9e2a9bafb95976e86d6e4bac3d 143 Pfam PF04138 GtrA-like protein 10 126 2.7E-21 T 13-10-2018 IPR007267 GtrA-like protein GO:0000271|GO:0016021 RAM_05280 da9c81c5e69d75c5356dd468413a05d3 421 Gene3D G3DSA:1.25.40.10 130 419 4.8E-17 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_05280 da9c81c5e69d75c5356dd468413a05d3 421 Pfam PF13560 Helix-turn-helix domain 5 62 3.4E-12 T 13-10-2018 RAM_05280 da9c81c5e69d75c5356dd468413a05d3 421 SMART SM00530 8 62 1.0E-9 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_05280 da9c81c5e69d75c5356dd468413a05d3 421 SUPERFAMILY SSF47413 3 67 4.22E-13 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_05280 da9c81c5e69d75c5356dd468413a05d3 421 SUPERFAMILY SSF48452 197 375 2.85E-9 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_05280 da9c81c5e69d75c5356dd468413a05d3 421 Gene3D G3DSA:1.10.260.40 1 81 2.7E-14 T 13-10-2018 RAM_40760 e99c36ef810e4196f88c2756ddb889e1 516 Gene3D G3DSA:3.40.30.120 388 516 4.9E-32 T 13-10-2018 RAM_40760 e99c36ef810e4196f88c2756ddb889e1 516 Gene3D G3DSA:3.50.50.60 6 352 2.2E-110 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_40760 e99c36ef810e4196f88c2756ddb889e1 516 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 308 324 1.8E-43 T 13-10-2018 RAM_40760 e99c36ef810e4196f88c2756ddb889e1 516 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 1.8E-43 T 13-10-2018 RAM_40760 e99c36ef810e4196f88c2756ddb889e1 516 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 293 308 1.8E-43 T 13-10-2018 RAM_40760 e99c36ef810e4196f88c2756ddb889e1 516 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 344 360 1.8E-43 T 13-10-2018 RAM_40760 e99c36ef810e4196f88c2756ddb889e1 516 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 326 344 1.8E-43 T 13-10-2018 RAM_40760 e99c36ef810e4196f88c2756ddb889e1 516 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 164 179 1.8E-43 T 13-10-2018 RAM_40760 e99c36ef810e4196f88c2756ddb889e1 516 SUPERFAMILY SSF51905 3 373 9.21E-58 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_40760 e99c36ef810e4196f88c2756ddb889e1 516 Gene3D G3DSA:3.30.9.50 71 290 2.2E-110 T 13-10-2018 RAM_40760 e99c36ef810e4196f88c2756ddb889e1 516 Pfam PF01494 FAD binding domain 5 358 5.4E-96 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_04840 455f86b2341e6c250fcedddf51ea2eb6 265 Gene3D G3DSA:3.30.530.20 1 162 9.7E-42 T 13-10-2018 IPR023393 START-like domain superfamily RAM_04840 455f86b2341e6c250fcedddf51ea2eb6 265 SUPERFAMILY SSF55961 8 159 1.63E-36 T 13-10-2018 RAM_04840 455f86b2341e6c250fcedddf51ea2eb6 265 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 24 139 1.7E-18 T 13-10-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like RAM_17895 d508b5391a71d13454ed18d1f92abc1b 225 SUPERFAMILY SSF88946 21 113 3.81E-20 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_17895 d508b5391a71d13454ed18d1f92abc1b 225 SUPERFAMILY SSF88659 145 220 2.06E-13 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_17895 d508b5391a71d13454ed18d1f92abc1b 225 Pfam PF04542 Sigma-70 region 2 48 101 6.5E-13 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_17895 d508b5391a71d13454ed18d1f92abc1b 225 Gene3D G3DSA:1.10.10.10 142 220 2.4E-13 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_17895 d508b5391a71d13454ed18d1f92abc1b 225 Pfam PF08281 Sigma-70, region 4 162 212 1.6E-9 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_17895 d508b5391a71d13454ed18d1f92abc1b 225 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 36 217 9.1E-23 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_17895 d508b5391a71d13454ed18d1f92abc1b 225 Gene3D G3DSA:1.10.1740.10 16 123 6.2E-24 T 13-10-2018 RAM_08640 70681b3384c486731de91fb189082ff1 225 SMART SM00411 2 91 2.8E-33 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RAM_08640 70681b3384c486731de91fb189082ff1 225 Gene3D G3DSA:4.10.520.10 2 100 2.7E-31 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 RAM_08640 70681b3384c486731de91fb189082ff1 225 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 47 66 - T 13-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 RAM_08640 70681b3384c486731de91fb189082ff1 225 SUPERFAMILY SSF47729 3 94 2.36E-26 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 RAM_08640 70681b3384c486731de91fb189082ff1 225 PRINTS PR01727 Prokaryotic integration host factor signature 41 56 6.5E-14 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RAM_08640 70681b3384c486731de91fb189082ff1 225 PRINTS PR01727 Prokaryotic integration host factor signature 75 89 6.5E-14 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RAM_08640 70681b3384c486731de91fb189082ff1 225 PRINTS PR01727 Prokaryotic integration host factor signature 59 72 6.5E-14 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RAM_08640 70681b3384c486731de91fb189082ff1 225 Pfam PF00216 Bacterial DNA-binding protein 3 90 1.3E-25 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RAM_02545 71183169de827a64d2e318e69d8dbc3e 188 Gene3D G3DSA:3.40.30.10 41 186 1.6E-38 T 13-10-2018 RAM_02545 71183169de827a64d2e318e69d8dbc3e 188 Pfam PF00578 AhpC/TSA family 52 166 5.7E-20 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 RAM_02545 71183169de827a64d2e318e69d8dbc3e 188 ProSitePatterns PS00194 Thioredoxin family active site. 78 96 - T 13-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 RAM_02545 71183169de827a64d2e318e69d8dbc3e 188 SUPERFAMILY SSF52833 50 186 2.37E-28 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RAM_34695 ba8bf30b52343b394f67c4ae16d19232 158 Pfam PF09900 Predicted membrane protein (DUF2127) 13 152 1.4E-26 T 13-10-2018 IPR021125 Protein of unknown function DUF2127 RAM_20820 d6c52fc0d8c1d7c8642716fbcbc310d0 314 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 308 6.8E-14 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_20820 d6c52fc0d8c1d7c8642716fbcbc310d0 314 Gene3D G3DSA:1.10.3720.10 73 312 6.8E-53 T 13-10-2018 IPR035906 MetI-like superfamily RAM_20820 d6c52fc0d8c1d7c8642716fbcbc310d0 314 SUPERFAMILY SSF161098 77 303 6.67E-49 T 13-10-2018 IPR035906 MetI-like superfamily RAM_18765 172dab4eefafc3ef2ce921cedf150ec7 119 SUPERFAMILY SSF56801 7 91 7.33E-24 T 13-10-2018 RAM_18765 172dab4eefafc3ef2ce921cedf150ec7 119 Pfam PF00501 AMP-binding enzyme 6 86 7.4E-21 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_18765 172dab4eefafc3ef2ce921cedf150ec7 119 Gene3D G3DSA:3.40.50.980 12 101 1.5E-28 T 13-10-2018 RAM_35500 0978c6d695e9453ebf161f90b2f4e4fa 289 SUPERFAMILY SSF161098 16 289 2.09E-59 T 13-10-2018 IPR035906 MetI-like superfamily RAM_35500 0978c6d695e9453ebf161f90b2f4e4fa 289 Gene3D G3DSA:1.10.3720.10 11 279 1.3E-58 T 13-10-2018 IPR035906 MetI-like superfamily RAM_35500 0978c6d695e9453ebf161f90b2f4e4fa 289 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 106 278 1.9E-18 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_17180 6ec689d80623b293c10bbe7473f78122 246 Pfam PF00378 Enoyl-CoA hydratase/isomerase 10 222 6.1E-40 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RAM_17180 6ec689d80623b293c10bbe7473f78122 246 SUPERFAMILY SSF52096 3 246 1.32E-59 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_17180 6ec689d80623b293c10bbe7473f78122 246 Gene3D G3DSA:3.90.226.10 2 244 5.8E-60 T 13-10-2018 RAM_22705 9e3400e1537bf4c8dbb805cfd22107cb 340 Pfam PF13556 PucR C-terminal helix-turn-helix domain 275 329 3.3E-12 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain RAM_22705 9e3400e1537bf4c8dbb805cfd22107cb 340 Gene3D G3DSA:1.10.10.2840 207 336 6.2E-12 T 13-10-2018 RAM_43890 8bf144d70aacb941aa9daa6cbb52badc 309 SMART SM00922 77 173 1.3E-23 T 13-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal RAM_43890 8bf144d70aacb941aa9daa6cbb52badc 309 Gene3D G3DSA:3.20.20.120 57 283 2.6E-129 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RAM_43890 8bf144d70aacb941aa9daa6cbb52badc 309 Pfam PF13378 Enolase C-terminal domain-like 79 279 6.4E-36 T 13-10-2018 IPR029065 Enolase C-terminal domain-like RAM_43890 8bf144d70aacb941aa9daa6cbb52badc 309 Hamap MF_00470 o-succinylbenzoate synthase [menC]. 1 298 22.389 T 13-10-2018 IPR010196 o-Succinylbenzoate synthase, MenC type1 GO:0000287|GO:0009234|GO:0016836 KEGG: 00130+4.2.1.113|MetaCyc: PWY-5837 RAM_43890 8bf144d70aacb941aa9daa6cbb52badc 309 SUPERFAMILY SSF51604 62 279 4.32E-52 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RAM_43890 8bf144d70aacb941aa9daa6cbb52badc 309 Gene3D G3DSA:3.30.390.10 4 302 2.6E-129 T 13-10-2018 IPR029017 Enolase-like, N-terminal RAM_33375 753ed3c7b7ac85829c4a91f8fa651399 132 SUPERFAMILY SSF52738 12 104 1.2E-14 T 13-10-2018 IPR035909 Methylesterase CheB, C-terminal RAM_33375 753ed3c7b7ac85829c4a91f8fa651399 132 Gene3D G3DSA:3.40.50.180 8 120 1.6E-17 T 13-10-2018 IPR035909 Methylesterase CheB, C-terminal RAM_33375 753ed3c7b7ac85829c4a91f8fa651399 132 Pfam PF01339 CheB methylesterase 16 111 1.1E-14 T 13-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RAM_00230 b3478cf71e0e05435a304d7557a0f24e 439 SUPERFAMILY SSF51971 1 308 2.59E-54 T 13-10-2018 RAM_00230 b3478cf71e0e05435a304d7557a0f24e 439 Gene3D G3DSA:3.50.50.60 39 313 7.4E-143 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_00230 b3478cf71e0e05435a304d7557a0f24e 439 PRINTS PR00419 Adrenodoxin reductase family signature 22 35 1.3E-7 T 13-10-2018 RAM_00230 b3478cf71e0e05435a304d7557a0f24e 439 PRINTS PR00419 Adrenodoxin reductase family signature 65 75 1.3E-7 T 13-10-2018 RAM_00230 b3478cf71e0e05435a304d7557a0f24e 439 PRINTS PR00419 Adrenodoxin reductase family signature 136 150 1.3E-7 T 13-10-2018 RAM_00230 b3478cf71e0e05435a304d7557a0f24e 439 SUPERFAMILY SSF51971 297 432 4.0E-6 T 13-10-2018 RAM_00230 b3478cf71e0e05435a304d7557a0f24e 439 PIRSF PIRSF000362 1 439 3.5E-160 T 13-10-2018 IPR021163 Ferredoxin-NADP+ reductase, adrenodoxin-type GO:0016491|GO:0055114 Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 RAM_00230 b3478cf71e0e05435a304d7557a0f24e 439 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 1 158 3.9E-8 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAM_00230 b3478cf71e0e05435a304d7557a0f24e 439 Gene3D G3DSA:3.40.50.720 1 433 7.4E-143 T 13-10-2018 RAM_29205 5cb1a2c2628f66b09a94165dd2c62085 363 Gene3D G3DSA:2.102.10.10 201 360 1.1E-34 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RAM_29205 5cb1a2c2628f66b09a94165dd2c62085 363 Pfam PF00355 Rieske [2Fe-2S] domain 280 336 4.2E-11 T 13-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RAM_29205 5cb1a2c2628f66b09a94165dd2c62085 363 SUPERFAMILY SSF50022 280 361 7.07E-25 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RAM_15145 fcfaca0073eeff0be80d5091f8ab6034 799 Pfam PF03636 Glycosyl hydrolase family 65, N-terminal domain 17 270 3.5E-63 T 13-10-2018 IPR005196 Glycoside hydrolase, family 65, N-terminal GO:0003824|GO:0005975 RAM_15145 fcfaca0073eeff0be80d5091f8ab6034 799 Pfam PF03633 Glycosyl hydrolase family 65, C-terminal domain 700 749 2.3E-17 T 13-10-2018 IPR005194 Glycoside hydrolase family 65, C-terminal RAM_15145 fcfaca0073eeff0be80d5091f8ab6034 799 PIRSF PIRSF036289 2 760 7.7E-218 T 13-10-2018 IPR017045 Maltose phosphorylase/glycosyl hydrolase/vacuolar acid trehalase RAM_15145 fcfaca0073eeff0be80d5091f8ab6034 799 Gene3D G3DSA:1.50.10.10 321 682 1.7E-123 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 RAM_15145 fcfaca0073eeff0be80d5091f8ab6034 799 Gene3D G3DSA:2.70.98.40 5 272 4.9E-59 T 13-10-2018 IPR037018 Glycoside hydrolase family 65, N-terminal domain superfamily RAM_15145 fcfaca0073eeff0be80d5091f8ab6034 799 Pfam PF03632 Glycosyl hydrolase family 65 central catalytic domain 327 696 2.5E-136 T 13-10-2018 IPR005195 Glycoside hydrolase, family 65, central catalytic GO:0003824|GO:0005975 RAM_15145 fcfaca0073eeff0be80d5091f8ab6034 799 SUPERFAMILY SSF48208 280 749 1.22E-123 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_15145 fcfaca0073eeff0be80d5091f8ab6034 799 Gene3D G3DSA:2.60.420.10 683 752 4.5E-22 T 13-10-2018 RAM_15145 fcfaca0073eeff0be80d5091f8ab6034 799 SUPERFAMILY SSF74650 7 272 1.6E-61 T 13-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 RAM_29500 173043a38b69d4e8e26d27818ed802e5 273 Gene3D G3DSA:1.10.3720.10 2 265 1.1E-58 T 13-10-2018 IPR035906 MetI-like superfamily RAM_29500 173043a38b69d4e8e26d27818ed802e5 273 SUPERFAMILY SSF161098 5 268 5.49E-65 T 13-10-2018 IPR035906 MetI-like superfamily RAM_29500 173043a38b69d4e8e26d27818ed802e5 273 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 90 263 1.4E-18 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_18775 7745c10fb238d7fa803b3011ddb0ac90 232 Gene3D G3DSA:3.10.520.20 1 84 3.7E-9 T 13-10-2018 RAM_18775 7745c10fb238d7fa803b3011ddb0ac90 232 Pfam PF02424 ApbE family 1 84 9.3E-9 T 13-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 RAM_18775 7745c10fb238d7fa803b3011ddb0ac90 232 Pfam PF02424 ApbE family 91 219 2.0E-22 T 13-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 RAM_18775 7745c10fb238d7fa803b3011ddb0ac90 232 Gene3D G3DSA:3.10.520.10 85 231 2.6E-27 T 13-10-2018 RAM_18775 7745c10fb238d7fa803b3011ddb0ac90 232 SUPERFAMILY SSF143631 1 225 2.35E-43 T 13-10-2018 IPR003374 ApbE-like superfamily RAM_01470 05d545fda5a8f9c6be6d1a0ce7e509c0 102 Pfam PF02467 Transcription factor WhiB 17 87 6.4E-23 T 13-10-2018 IPR034768 WhiB-like iron-sulfur binding domain RAM_01470 05d545fda5a8f9c6be6d1a0ce7e509c0 102 Hamap MF_01479 Transcriptional regulator WhiB [whiB]. 1 93 18.276 T 13-10-2018 IPR003482 Transcription factor WhiB RAM_17765 03369ea1798e48a74c47f127ec0a20e6 205 SUPERFAMILY SSF46689 9 91 1.33E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_17765 03369ea1798e48a74c47f127ec0a20e6 205 Pfam PF00440 Bacterial regulatory proteins, tetR family 25 66 2.0E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_17765 03369ea1798e48a74c47f127ec0a20e6 205 Gene3D G3DSA:1.10.357.10 7 201 4.1E-26 T 13-10-2018 RAM_19830 1cd03e84de111a01224609372bd85c6e 372 Gene3D G3DSA:1.10.10.10 9 81 6.1E-13 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_19830 1cd03e84de111a01224609372bd85c6e 372 Pfam PF00480 ROK family 98 356 1.6E-21 T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 RAM_19830 1cd03e84de111a01224609372bd85c6e 372 SUPERFAMILY SSF46785 15 81 2.61E-11 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_19830 1cd03e84de111a01224609372bd85c6e 372 SUPERFAMILY SSF53067 86 360 6.22E-31 T 13-10-2018 RAM_19830 1cd03e84de111a01224609372bd85c6e 372 Gene3D G3DSA:3.30.420.40 203 341 8.2E-36 T 13-10-2018 RAM_19830 1cd03e84de111a01224609372bd85c6e 372 Gene3D G3DSA:3.30.420.40 90 353 8.2E-36 T 13-10-2018 RAM_19830 1cd03e84de111a01224609372bd85c6e 372 Pfam PF13412 Winged helix-turn-helix DNA-binding 18 59 4.9E-7 T 13-10-2018 RAM_15835 38987a0a456e1b9c88a13bfe75544bf2 248 SUPERFAMILY SSF81296 61 246 1.4E-30 T 13-10-2018 IPR014756 Immunoglobulin E-set RAM_15835 38987a0a456e1b9c88a13bfe75544bf2 248 Pfam PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading 61 243 1.7E-32 T 13-10-2018 IPR004302 Cellulose/chitin-binding protein, N-terminal RAM_15835 38987a0a456e1b9c88a13bfe75544bf2 248 Gene3D G3DSA:2.70.50.50 61 245 4.0E-63 T 13-10-2018 RAM_27785 73c449dd07292cb9c70367582dfa37cb 411 Gene3D G3DSA:2.120.10.30 4 111 2.3E-9 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RAM_27785 73c449dd07292cb9c70367582dfa37cb 411 SUPERFAMILY SSF82171 23 401 2.94E-13 T 13-10-2018 RAM_27785 73c449dd07292cb9c70367582dfa37cb 411 Gene3D G3DSA:2.120.10.30 112 278 1.3E-7 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RAM_27785 73c449dd07292cb9c70367582dfa37cb 411 Gene3D G3DSA:2.120.10.30 307 407 1.8E-5 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RAM_27785 73c449dd07292cb9c70367582dfa37cb 411 Pfam PF07676 WD40-like Beta Propeller Repeat 195 215 0.063 T 13-10-2018 IPR011659 WD40-like Beta Propeller RAM_27785 73c449dd07292cb9c70367582dfa37cb 411 Pfam PF07676 WD40-like Beta Propeller Repeat 369 401 0.027 T 13-10-2018 IPR011659 WD40-like Beta Propeller RAM_27785 73c449dd07292cb9c70367582dfa37cb 411 Pfam PF07676 WD40-like Beta Propeller Repeat 17 39 0.006 T 13-10-2018 IPR011659 WD40-like Beta Propeller RAM_27785 73c449dd07292cb9c70367582dfa37cb 411 Pfam PF07676 WD40-like Beta Propeller Repeat 80 108 0.0013 T 13-10-2018 IPR011659 WD40-like Beta Propeller RAM_29770 a80a37cfa916861d39b1efc0389474f0 216 SUPERFAMILY SSF117987 95 212 2.12E-29 T 13-10-2018 RAM_29770 a80a37cfa916861d39b1efc0389474f0 216 Gene3D G3DSA:3.30.70.1200 1 90 1.9E-24 T 13-10-2018 RAM_29770 a80a37cfa916861d39b1efc0389474f0 216 SUPERFAMILY SSF117987 1 79 1.6E-19 T 13-10-2018 RAM_29770 a80a37cfa916861d39b1efc0389474f0 216 TIGRFAM TIGR01907 casE_Cse3: CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI 2 212 1.8E-26 T 13-10-2018 IPR010179 CRISPR-associated protein Cse3 RAM_29770 a80a37cfa916861d39b1efc0389474f0 216 SMART SM01101 1 212 4.9E-61 T 13-10-2018 IPR010179 CRISPR-associated protein Cse3 RAM_29770 a80a37cfa916861d39b1efc0389474f0 216 Pfam PF08798 CRISPR associated protein 2 212 9.7E-58 T 13-10-2018 IPR010179 CRISPR-associated protein Cse3 RAM_29770 a80a37cfa916861d39b1efc0389474f0 216 Gene3D G3DSA:3.30.70.1210 94 212 6.9E-33 T 13-10-2018 RAM_25235 3698662c704896b8455cd9a423c61529 284 PRINTS PR00111 Alpha/beta hydrolase fold signature 99 112 1.5E-11 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_25235 3698662c704896b8455cd9a423c61529 284 PRINTS PR00111 Alpha/beta hydrolase fold signature 54 69 1.5E-11 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_25235 3698662c704896b8455cd9a423c61529 284 PRINTS PR00111 Alpha/beta hydrolase fold signature 113 126 1.5E-11 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_25235 3698662c704896b8455cd9a423c61529 284 PRINTS PR00111 Alpha/beta hydrolase fold signature 228 242 1.5E-11 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_25235 3698662c704896b8455cd9a423c61529 284 Pfam PF00561 alpha/beta hydrolase fold 32 269 9.9E-18 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_25235 3698662c704896b8455cd9a423c61529 284 SUPERFAMILY SSF53474 6 283 1.04E-52 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_25235 3698662c704896b8455cd9a423c61529 284 Gene3D G3DSA:3.40.50.1820 7 284 5.0E-51 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_16275 475a146dadbfd8be394ea45fc2fed9e1 139 Gene3D G3DSA:3.30.750.24 12 128 4.1E-24 T 13-10-2018 IPR036513 STAS domain superfamily RAM_16275 475a146dadbfd8be394ea45fc2fed9e1 139 Pfam PF01740 STAS domain 23 123 6.3E-8 T 13-10-2018 IPR002645 STAS domain RAM_16275 475a146dadbfd8be394ea45fc2fed9e1 139 SUPERFAMILY SSF52091 18 125 1.2E-15 T 13-10-2018 IPR036513 STAS domain superfamily RAM_33440 4a4a4fe4fc962ce99e7e95a43fd346e8 226 Pfam PF13460 NAD(P)H-binding 1 184 3.9E-31 T 13-10-2018 IPR016040 NAD(P)-binding domain RAM_33440 4a4a4fe4fc962ce99e7e95a43fd346e8 226 Gene3D G3DSA:3.40.50.720 1 203 3.8E-29 T 13-10-2018 RAM_33440 4a4a4fe4fc962ce99e7e95a43fd346e8 226 SUPERFAMILY SSF51735 1 196 1.5E-21 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_07865 515afc345fc6c10c94144574138cbd40 257 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 173 251 1.1E-5 T 13-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 RAM_07865 515afc345fc6c10c94144574138cbd40 257 Gene3D G3DSA:3.90.850.10 2 253 1.2E-68 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 RAM_07865 515afc345fc6c10c94144574138cbd40 257 SUPERFAMILY SSF56529 3 252 5.36E-54 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 RAM_02170 2667ac51ecfcf9021b86d4e45db8dc8c 122 SUPERFAMILY SSF54593 6 121 1.38E-16 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_02170 2667ac51ecfcf9021b86d4e45db8dc8c 122 Gene3D G3DSA:3.10.180.10 4 122 3.5E-30 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_11520 17b8128e03ddcf04f442886921eeed7d 230 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 25 215 1.7E-23 T 13-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 RAM_11520 17b8128e03ddcf04f442886921eeed7d 230 SUPERFAMILY SSF52518 25 225 2.32E-45 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_11520 17b8128e03ddcf04f442886921eeed7d 230 Gene3D G3DSA:3.40.50.970 14 229 3.2E-48 T 13-10-2018 RAM_10495 3f73030d5c4b4414491de7b20b711ba7 188 Pfam PF05076 Suppressor of fused protein (SUFU) 39 184 3.1E-14 T 13-10-2018 IPR020941 Suppressor of fused-like domain Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5610787|Reactome: R-HSA-5632684 RAM_31500 8eaee242b1cab3264c5ce668397b17d8 237 PIRSF PIRSF039137 1 234 1.5E-106 T 13-10-2018 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 RAM_31500 8eaee242b1cab3264c5ce668397b17d8 237 SUPERFAMILY SSF52540 2 232 6.3E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_31500 8eaee242b1cab3264c5ce668397b17d8 237 Gene3D G3DSA:3.40.50.300 1 234 2.5E-65 T 13-10-2018 RAM_31500 8eaee242b1cab3264c5ce668397b17d8 237 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_31500 8eaee242b1cab3264c5ce668397b17d8 237 SMART SM00382 27 210 5.1E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_31500 8eaee242b1cab3264c5ce668397b17d8 237 Pfam PF00005 ABC transporter 18 161 8.2E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_18485 8031e3438e867f31474489d9b2ebed4c 621 SUPERFAMILY SSF53067 42 366 9.32E-11 T 13-10-2018 RAM_18485 8031e3438e867f31474489d9b2ebed4c 621 Gene3D G3DSA:3.30.420.40 41 363 1.0E-84 T 13-10-2018 RAM_18485 8031e3438e867f31474489d9b2ebed4c 621 Gene3D G3DSA:3.90.870.20 377 577 1.8E-65 T 13-10-2018 IPR038152 Carbamoyltransferase, C-terminal domain superfamily RAM_18485 8031e3438e867f31474489d9b2ebed4c 621 Gene3D G3DSA:3.30.420.350 144 356 1.0E-84 T 13-10-2018 RAM_18485 8031e3438e867f31474489d9b2ebed4c 621 Pfam PF16861 Carbamoyltransferase C-terminus 408 579 1.7E-60 T 13-10-2018 IPR031730 Carbamoyltransferase, C-terminal RAM_18485 8031e3438e867f31474489d9b2ebed4c 621 Pfam PF02543 Carbamoyltransferase N-terminus 41 363 9.9E-43 T 13-10-2018 IPR003696 Carbamoyltransferase GO:0003824|GO:0009058 RAM_30560 fcd84d3e65cf6c9ffd3fc3143fc75536 688 ProSitePatterns PS00455 Putative AMP-binding domain signature. 344 355 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_30560 fcd84d3e65cf6c9ffd3fc3143fc75536 688 SUPERFAMILY SSF56801 189 681 5.36E-123 T 13-10-2018 RAM_30560 fcd84d3e65cf6c9ffd3fc3143fc75536 688 Gene3D G3DSA:3.40.50.12780 178 578 4.6E-83 T 13-10-2018 RAM_30560 fcd84d3e65cf6c9ffd3fc3143fc75536 688 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 6 134 3.5E-6 T 13-10-2018 IPR019587 Polyketide cyclase/dehydrase RAM_30560 fcd84d3e65cf6c9ffd3fc3143fc75536 688 Gene3D G3DSA:3.30.300.310 583 684 2.9E-30 T 13-10-2018 RAM_30560 fcd84d3e65cf6c9ffd3fc3143fc75536 688 Pfam PF13193 AMP-binding enzyme C-terminal domain 597 671 9.8E-22 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_30560 fcd84d3e65cf6c9ffd3fc3143fc75536 688 Pfam PF00501 AMP-binding enzyme 195 587 8.7E-67 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_30560 fcd84d3e65cf6c9ffd3fc3143fc75536 688 SUPERFAMILY SSF55961 6 139 1.32E-14 T 13-10-2018 RAM_30560 fcd84d3e65cf6c9ffd3fc3143fc75536 688 Gene3D G3DSA:3.30.530.20 5 140 1.2E-10 T 13-10-2018 IPR023393 START-like domain superfamily RAM_27115 017f3ebd32eaa284648d572c977d4cb7 305 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 7 289 7.2E-70 T 13-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 RAM_28955 3cc79848865f994b828b0ca501697925 205 SUPERFAMILY SSF46689 15 83 6.98E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_28955 3cc79848865f994b828b0ca501697925 205 ProSitePatterns PS01081 TetR-type HTH domain signature. 37 68 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RAM_28955 3cc79848865f994b828b0ca501697925 205 Pfam PF00440 Bacterial regulatory proteins, tetR family 28 66 8.0E-12 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_28955 3cc79848865f994b828b0ca501697925 205 Gene3D G3DSA:1.10.357.10 10 203 1.3E-38 T 13-10-2018 RAM_00855 64251d4162a4108c3e88f69e7dfb0438 216 Pfam PF04203 Sortase family 72 211 5.8E-14 T 13-10-2018 IPR005754 Sortase family RAM_00855 64251d4162a4108c3e88f69e7dfb0438 216 Gene3D G3DSA:2.40.260.10 63 214 6.2E-23 T 13-10-2018 IPR023365 Sortase domain superfamily RAM_00855 64251d4162a4108c3e88f69e7dfb0438 216 SUPERFAMILY SSF63817 68 201 5.89E-12 T 13-10-2018 IPR023365 Sortase domain superfamily RAM_22535 d3fd9ccf7778899b0f0868ce30f43d68 371 Pfam PF00144 Beta-lactamase 4 360 2.6E-55 T 13-10-2018 IPR001466 Beta-lactamase-related RAM_22535 d3fd9ccf7778899b0f0868ce30f43d68 371 Gene3D G3DSA:3.40.710.10 2 362 1.1E-86 T 13-10-2018 RAM_22535 d3fd9ccf7778899b0f0868ce30f43d68 371 SUPERFAMILY SSF56601 3 361 5.11E-75 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_19440 0dadbb1dab514b2106f69775491c0d8e 282 Pfam PF00106 short chain dehydrogenase 19 215 1.7E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19440 0dadbb1dab514b2106f69775491c0d8e 282 Gene3D G3DSA:3.40.50.720 14 277 3.9E-67 T 13-10-2018 RAM_19440 0dadbb1dab514b2106f69775491c0d8e 282 SUPERFAMILY SSF51735 14 259 4.93E-58 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_19440 0dadbb1dab514b2106f69775491c0d8e 282 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 103 114 1.3E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19440 0dadbb1dab514b2106f69775491c0d8e 282 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 164 1.3E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19440 0dadbb1dab514b2106f69775491c0d8e 282 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 177 196 1.3E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19440 0dadbb1dab514b2106f69775491c0d8e 282 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 196 1.2E-28 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19440 0dadbb1dab514b2106f69775491c0d8e 282 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 19 36 1.2E-28 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19440 0dadbb1dab514b2106f69775491c0d8e 282 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 103 114 1.2E-28 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19440 0dadbb1dab514b2106f69775491c0d8e 282 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 198 215 1.2E-28 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19440 0dadbb1dab514b2106f69775491c0d8e 282 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 166 1.2E-28 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_12585 323e722246acb279802dff12f53acfb3 536 Pfam PF00171 Aldehyde dehydrogenase family 45 501 1.7E-140 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RAM_12585 323e722246acb279802dff12f53acfb3 536 Gene3D G3DSA:3.40.605.10 48 498 3.0E-149 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RAM_12585 323e722246acb279802dff12f53acfb3 536 SUPERFAMILY SSF53720 40 505 1.31E-138 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RAM_12585 323e722246acb279802dff12f53acfb3 536 Gene3D G3DSA:3.40.309.10 277 470 3.0E-149 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RAM_12585 323e722246acb279802dff12f53acfb3 536 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 273 280 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 RAM_28840 56348a9d9ac303e6ff4d86895c78394e 376 Gene3D G3DSA:1.20.1280.120 40 347 1.4E-17 T 13-10-2018 RAM_28840 56348a9d9ac303e6ff4d86895c78394e 376 Gene3D G3DSA:2.40.180.20 53 335 1.4E-17 T 13-10-2018 RAM_28840 56348a9d9ac303e6ff4d86895c78394e 376 SUPERFAMILY SSF56634 41 357 7.02E-33 T 13-10-2018 IPR020835 Catalase superfamily GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RAM_17555 84fd116b2bf2d4f975f3b8fd8f2cf36c 284 SUPERFAMILY SSF51735 2 256 8.73E-42 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_17555 84fd116b2bf2d4f975f3b8fd8f2cf36c 284 Gene3D G3DSA:3.40.50.720 3 267 9.8E-72 T 13-10-2018 RAM_17555 84fd116b2bf2d4f975f3b8fd8f2cf36c 284 Gene3D G3DSA:3.90.25.10 137 268 9.8E-72 T 13-10-2018 RAM_17555 84fd116b2bf2d4f975f3b8fd8f2cf36c 284 Pfam PF13460 NAD(P)H-binding 6 110 2.0E-14 T 13-10-2018 IPR016040 NAD(P)-binding domain RAM_28945 0bc7dcd75279f12014e6a247c2f753b8 417 Pfam PF00535 Glycosyl transferase family 2 24 186 3.1E-22 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RAM_28945 0bc7dcd75279f12014e6a247c2f753b8 417 Gene3D G3DSA:3.90.550.10 10 259 2.0E-41 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_28945 0bc7dcd75279f12014e6a247c2f753b8 417 SUPERFAMILY SSF53448 14 232 9.38E-36 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_28945 0bc7dcd75279f12014e6a247c2f753b8 417 Pfam PF04138 GtrA-like protein 291 407 3.1E-9 T 13-10-2018 IPR007267 GtrA-like protein GO:0000271|GO:0016021 RAM_29560 5241b29d67893b74553e259aa9a8edc8 268 SMART SM00849 17 202 3.7E-11 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_29560 5241b29d67893b74553e259aa9a8edc8 268 SUPERFAMILY SSF56281 19 242 1.19E-27 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_29560 5241b29d67893b74553e259aa9a8edc8 268 Gene3D G3DSA:3.60.15.10 5 238 2.6E-20 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_29560 5241b29d67893b74553e259aa9a8edc8 268 Pfam PF00753 Metallo-beta-lactamase superfamily 19 202 1.1E-9 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_29775 483f7917819dacc45947b8ca9cf63166 236 Pfam PF09704 CRISPR-associated protein (Cas_Cas5) 4 216 1.8E-49 T 13-10-2018 IPR021124 CRISPR-associated protein, Cas5 GO:0043571 RAM_29775 483f7917819dacc45947b8ca9cf63166 236 TIGRFAM TIGR02593 CRISPR_cas5: CRISPR-associated protein Cas5 4 45 2.3E-8 T 13-10-2018 IPR013422 CRISPR-associated protein Cas5, N-terminal RAM_29775 483f7917819dacc45947b8ca9cf63166 236 Gene3D G3DSA:3.30.70.2660 2 233 3.6E-57 T 13-10-2018 RAM_29775 483f7917819dacc45947b8ca9cf63166 236 TIGRFAM TIGR01868 casD_Cas5e: CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI 4 218 1.2E-44 T 13-10-2018 IPR010147 CRISPR-associated protein, CasD GO:0003723|GO:0051607 RAM_19420 38ee62d86bb27d1930028f9f6cbac707 196 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 65 1.2E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_19420 38ee62d86bb27d1930028f9f6cbac707 196 SUPERFAMILY SSF48498 86 189 1.36E-13 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_19420 38ee62d86bb27d1930028f9f6cbac707 196 Gene3D G3DSA:1.10.357.10 3 194 1.5E-56 T 13-10-2018 RAM_19420 38ee62d86bb27d1930028f9f6cbac707 196 SUPERFAMILY SSF46689 7 87 9.98E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_26470 735d411520cad82bf14a918785b3f365 329 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 100 318 1.1E-13 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_26470 735d411520cad82bf14a918785b3f365 329 Gene3D G3DSA:1.10.3720.10 75 324 2.6E-68 T 13-10-2018 IPR035906 MetI-like superfamily RAM_26470 735d411520cad82bf14a918785b3f365 329 SUPERFAMILY SSF161098 79 311 1.7E-60 T 13-10-2018 IPR035906 MetI-like superfamily RAM_31880 df5bf04ac420b7804e3d6be6c6b51268 189 Gene3D G3DSA:1.20.1290.10 14 180 4.2E-33 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_31880 df5bf04ac420b7804e3d6be6c6b51268 189 SUPERFAMILY SSF69118 1 181 1.2E-38 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_35530 2cf443e096c83072c8731585e2f7ebe9 406 Gene3D G3DSA:1.10.10.10 20 85 4.5E-8 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_35530 2cf443e096c83072c8731585e2f7ebe9 406 Gene3D G3DSA:3.30.420.40 98 393 9.0E-75 T 13-10-2018 RAM_35530 2cf443e096c83072c8731585e2f7ebe9 406 SUPERFAMILY SSF53067 90 398 4.8E-46 T 13-10-2018 RAM_35530 2cf443e096c83072c8731585e2f7ebe9 406 Gene3D G3DSA:3.30.420.40 217 384 9.0E-75 T 13-10-2018 RAM_35530 2cf443e096c83072c8731585e2f7ebe9 406 Pfam PF13412 Winged helix-turn-helix DNA-binding 24 68 1.4E-9 T 13-10-2018 RAM_35530 2cf443e096c83072c8731585e2f7ebe9 406 SUPERFAMILY SSF46785 21 77 2.21E-6 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_35530 2cf443e096c83072c8731585e2f7ebe9 406 Pfam PF00480 ROK family 93 396 6.7E-49 T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 RAM_23690 57ae2ca39d85c6ed889eeda0a3e0f7a1 435 Gene3D G3DSA:3.40.630.10 2 197 2.0E-46 T 13-10-2018 RAM_23690 57ae2ca39d85c6ed889eeda0a3e0f7a1 435 Pfam PF01546 Peptidase family M20/M25/M40 75 434 5.3E-35 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 RAM_23690 57ae2ca39d85c6ed889eeda0a3e0f7a1 435 SUPERFAMILY SSF55031 196 319 3.98E-9 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain RAM_23690 57ae2ca39d85c6ed889eeda0a3e0f7a1 435 Pfam PF07687 Peptidase dimerisation domain 192 319 1.3E-13 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain RAM_23690 57ae2ca39d85c6ed889eeda0a3e0f7a1 435 SUPERFAMILY SSF53187 5 434 8.91E-55 T 13-10-2018 RAM_25470 960312f91d075de12c33791892c8778d 55 ProSitePatterns PS00582 Ribosomal protein L33 signature. 23 42 - T 13-10-2018 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_25470 960312f91d075de12c33791892c8778d 55 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 7 55 14.212 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_25470 960312f91d075de12c33791892c8778d 55 Pfam PF00471 Ribosomal protein L33 10 55 5.3E-17 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_25470 960312f91d075de12c33791892c8778d 55 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 1 55 4.2E-22 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_25470 960312f91d075de12c33791892c8778d 55 Gene3D G3DSA:2.20.28.120 1 55 7.3E-25 T 13-10-2018 IPR038584 Ribosomal protein L33 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_25470 960312f91d075de12c33791892c8778d 55 SUPERFAMILY SSF57829 4 55 1.53E-17 T 13-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 RAM_15530 bef1b7bcf1f5702a03fdc42a8d62061e 287 Pfam PF14361 RsbT co-antagonist protein rsbRD N-terminal domain 13 110 8.0E-16 T 13-10-2018 IPR025751 RsbT co-antagonist protein RsbRD, N-terminal domain RAM_15530 bef1b7bcf1f5702a03fdc42a8d62061e 287 Gene3D G3DSA:3.30.750.24 158 277 4.4E-38 T 13-10-2018 IPR036513 STAS domain superfamily RAM_15530 bef1b7bcf1f5702a03fdc42a8d62061e 287 Pfam PF01740 STAS domain 171 256 2.1E-10 T 13-10-2018 IPR002645 STAS domain RAM_15530 bef1b7bcf1f5702a03fdc42a8d62061e 287 SUPERFAMILY SSF52091 162 272 1.1E-19 T 13-10-2018 IPR036513 STAS domain superfamily RAM_18900 03d846a18e5aaba55a729b05a05515ed 937 Pfam PF02929 Beta galactosidase small chain 758 858 4.4E-4 T 13-10-2018 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_18900 03d846a18e5aaba55a729b05a05515ed 937 SUPERFAMILY SSF49303 214 304 7.19E-13 T 13-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily RAM_18900 03d846a18e5aaba55a729b05a05515ed 937 SUPERFAMILY SSF51445 310 556 2.21E-52 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_18900 03d846a18e5aaba55a729b05a05515ed 937 Gene3D G3DSA:2.60.40.10 206 304 1.0E-11 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_18900 03d846a18e5aaba55a729b05a05515ed 937 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 69 201 5.0E-15 T 13-10-2018 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RAM_18900 03d846a18e5aaba55a729b05a05515ed 937 SUPERFAMILY SSF74650 750 876 1.73E-14 T 13-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 RAM_18900 03d846a18e5aaba55a729b05a05515ed 937 PRINTS PR00132 Glycosyl hydrolase family 2 signature 347 365 4.2E-9 T 13-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RAM_18900 03d846a18e5aaba55a729b05a05515ed 937 PRINTS PR00132 Glycosyl hydrolase family 2 signature 316 330 4.2E-9 T 13-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RAM_18900 03d846a18e5aaba55a729b05a05515ed 937 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 308 428 1.8E-28 T 13-10-2018 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 RAM_18900 03d846a18e5aaba55a729b05a05515ed 937 Gene3D G3DSA:2.60.120.260 46 201 1.2E-32 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_18900 03d846a18e5aaba55a729b05a05515ed 937 Gene3D G3DSA:2.60.40.10 573 657 3.4E-7 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_18900 03d846a18e5aaba55a729b05a05515ed 937 Gene3D G3DSA:3.20.20.80 306 555 1.1E-51 T 13-10-2018 RAM_18900 03d846a18e5aaba55a729b05a05515ed 937 Pfam PF00703 Glycosyl hydrolases family 2 226 304 1.8E-8 T 13-10-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 RAM_18900 03d846a18e5aaba55a729b05a05515ed 937 SUPERFAMILY SSF49303 574 645 3.67E-7 T 13-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily RAM_18900 03d846a18e5aaba55a729b05a05515ed 937 SUPERFAMILY SSF49785 56 201 8.67E-35 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_18900 03d846a18e5aaba55a729b05a05515ed 937 Gene3D G3DSA:2.70.98.10 743 881 2.9E-6 T 13-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 RAM_42220 ceec66d93f371d74bf84d9bde1471d8c 257 Gene3D G3DSA:1.10.260.40 1 66 5.3E-10 T 13-10-2018 RAM_42220 ceec66d93f371d74bf84d9bde1471d8c 257 Pfam PF13560 Helix-turn-helix domain 3 63 8.1E-9 T 13-10-2018 RAM_42220 ceec66d93f371d74bf84d9bde1471d8c 257 SUPERFAMILY SSF47413 2 60 8.31E-12 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_42220 ceec66d93f371d74bf84d9bde1471d8c 257 SMART SM00530 6 61 3.8E-9 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_25710 201be4c8c8aab0dc5c648d2c121d5e33 132 Pfam PF00589 Phage integrase family 16 109 7.6E-14 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RAM_25710 201be4c8c8aab0dc5c648d2c121d5e33 132 Gene3D G3DSA:1.10.443.10 2 126 7.7E-23 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 RAM_25710 201be4c8c8aab0dc5c648d2c121d5e33 132 SUPERFAMILY SSF56349 24 116 5.0E-18 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RAM_28160 cdf0c6561e44883715b652acfbf4535d 168 SUPERFAMILY SSF56112 13 129 2.89E-11 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_28160 cdf0c6561e44883715b652acfbf4535d 168 Pfam PF01636 Phosphotransferase enzyme family 11 119 9.0E-10 T 13-10-2018 IPR002575 Aminoglycoside phosphotransferase RAM_28160 cdf0c6561e44883715b652acfbf4535d 168 Gene3D G3DSA:3.90.1200.10 3 166 3.6E-16 T 13-10-2018 RAM_42265 de4f53460a727345dac80599d6ae969b 117 SUPERFAMILY SSF52499 21 116 1.19E-30 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 RAM_42265 de4f53460a727345dac80599d6ae969b 117 Pfam PF00857 Isochorismatase family 12 111 7.3E-27 T 13-10-2018 IPR000868 Isochorismatase-like GO:0003824 RAM_42265 de4f53460a727345dac80599d6ae969b 117 Gene3D G3DSA:3.40.50.850 7 117 1.9E-29 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 RAM_14100 35345ba61b183ac07aa96a7fea8c8b89 168 Gene3D G3DSA:3.40.50.960 7 161 1.9E-52 T 13-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RAM_14100 35345ba61b183ac07aa96a7fea8c8b89 168 SUPERFAMILY SSF52121 13 160 4.71E-50 T 13-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RAM_14100 35345ba61b183ac07aa96a7fea8c8b89 168 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 19 155 1.7E-48 T 13-10-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RAM_14100 35345ba61b183ac07aa96a7fea8c8b89 168 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 14 158 25.778 T 13-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RAM_14100 35345ba61b183ac07aa96a7fea8c8b89 168 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 19 153 1.5E-41 T 13-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RAM_24450 822a00d1481e58c4a29a212bd0992538 402 SUPERFAMILY SSF56059 95 310 6.68E-28 T 13-10-2018 RAM_24450 822a00d1481e58c4a29a212bd0992538 402 Pfam PF02655 ATP-grasp domain 112 283 1.3E-6 T 13-10-2018 IPR003806 ATP-grasp fold, DUF201-type GO:0005524|GO:0046872 RAM_24450 822a00d1481e58c4a29a212bd0992538 402 Gene3D G3DSA:3.30.470.20 104 341 5.4E-40 T 13-10-2018 RAM_27255 9e0baf0807d1d962083b6b6a0e5b33be 55 SUPERFAMILY SSF51905 1 51 3.45E-15 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_27255 9e0baf0807d1d962083b6b6a0e5b33be 55 Gene3D G3DSA:3.50.50.60 1 47 1.6E-21 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_27255 9e0baf0807d1d962083b6b6a0e5b33be 55 Pfam PF05199 GMC oxidoreductase 2 43 1.8E-17 T 13-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 RAM_12675 cf8014bf7261939452f0044dba18bc4f 142 Pfam PF05331 Protein of unknown function (DUF742) 27 142 1.3E-29 T 13-10-2018 IPR007995 Protein of unknown function DUF742 RAM_46110 2fde75e9683ed1f4ea58d3c481e37651 224 SUPERFAMILY SSF51445 29 222 1.37E-57 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_46110 2fde75e9683ed1f4ea58d3c481e37651 224 Gene3D G3DSA:3.20.20.70 20 224 4.6E-86 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_46110 2fde75e9683ed1f4ea58d3c481e37651 224 ProSitePatterns PS00512 Alpha-galactosidase signature. 65 81 - T 13-10-2018 IPR000111 Glycoside hydrolase family 27/36, conserved site GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_46110 2fde75e9683ed1f4ea58d3c481e37651 224 PRINTS PR00740 Glycosyl hydrolase family 27 signature 60 75 8.7E-20 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_46110 2fde75e9683ed1f4ea58d3c481e37651 224 PRINTS PR00740 Glycosyl hydrolase family 27 signature 24 43 8.7E-20 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_46110 2fde75e9683ed1f4ea58d3c481e37651 224 PRINTS PR00740 Glycosyl hydrolase family 27 signature 178 196 8.7E-20 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_46110 2fde75e9683ed1f4ea58d3c481e37651 224 PRINTS PR00740 Glycosyl hydrolase family 27 signature 101 122 8.7E-20 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_46110 2fde75e9683ed1f4ea58d3c481e37651 224 Pfam PF16499 Alpha galactosidase A 30 203 3.7E-34 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_45035 4c6ec977442b4f84b4add6413c0bc5af 117 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 75 6.6E-16 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_45035 4c6ec977442b4f84b4add6413c0bc5af 117 SUPERFAMILY SSF46785 5 79 3.17E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_45035 4c6ec977442b4f84b4add6413c0bc5af 117 Gene3D G3DSA:1.10.10.10 12 116 5.3E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_45035 4c6ec977442b4f84b4add6413c0bc5af 117 SMART SM00345 16 75 1.2E-11 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_05000 d54cf5306cc2d5392ccf20d392eb03ea 207 SUPERFAMILY SSF46894 135 207 1.26E-17 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_05000 d54cf5306cc2d5392ccf20d392eb03ea 207 Pfam PF00196 Bacterial regulatory proteins, luxR family 147 201 8.0E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_05000 d54cf5306cc2d5392ccf20d392eb03ea 207 SMART SM00421 144 201 1.1E-17 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_05000 d54cf5306cc2d5392ccf20d392eb03ea 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 147 161 9.2E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_05000 d54cf5306cc2d5392ccf20d392eb03ea 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 161 177 9.2E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_05000 d54cf5306cc2d5392ccf20d392eb03ea 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 177 189 9.2E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_05000 d54cf5306cc2d5392ccf20d392eb03ea 207 Gene3D G3DSA:1.10.10.10 94 207 7.7E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_39855 5dae2caacae03702930128a75c6fcd85 255 Gene3D G3DSA:1.10.12.10 199 255 3.2E-15 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal RAM_39855 5dae2caacae03702930128a75c6fcd85 255 Pfam PF00378 Enoyl-CoA hydratase/isomerase 14 255 3.1E-49 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RAM_39855 5dae2caacae03702930128a75c6fcd85 255 Gene3D G3DSA:3.90.226.10 5 196 2.1E-51 T 13-10-2018 RAM_39855 5dae2caacae03702930128a75c6fcd85 255 SUPERFAMILY SSF52096 2 255 1.81E-67 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_13445 a44feca3967a733b03fdd042e1b1d686 230 Pfam PF06778 Chlorite dismutase 35 220 9.1E-72 T 13-10-2018 IPR010644 Putative heme-dependent peroxidase/Chlorite dismutase RAM_13445 a44feca3967a733b03fdd042e1b1d686 230 SUPERFAMILY SSF54909 4 229 4.02E-77 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_13445 a44feca3967a733b03fdd042e1b1d686 230 Gene3D G3DSA:3.30.70.1100 126 229 1.1E-35 T 13-10-2018 RAM_44550 5314a168a4b17092be004ebf388fd68c 131 SUPERFAMILY SSF50475 5 128 3.39E-28 T 13-10-2018 RAM_44550 5314a168a4b17092be004ebf388fd68c 131 Gene3D G3DSA:2.30.110.10 3 130 2.7E-36 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_44550 5314a168a4b17092be004ebf388fd68c 131 TIGRFAM TIGR03618 Rv1155_F420: PPOX class probable F420-dependent enzyme 9 127 2.2E-39 T 13-10-2018 IPR019920 F420-binding domain, putative RAM_44550 5314a168a4b17092be004ebf388fd68c 131 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 5 89 1.6E-18 T 13-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RAM_07270 5039f167dec76dbf0d70bf841250621f 402 Gene3D G3DSA:1.10.630.10 4 401 3.9E-79 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_07270 5039f167dec76dbf0d70bf841250621f 402 SUPERFAMILY SSF48264 11 399 2.49E-51 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_07270 5039f167dec76dbf0d70bf841250621f 402 PRINTS PR00359 B-class P450 signature 143 159 3.0E-17 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_07270 5039f167dec76dbf0d70bf841250621f 402 PRINTS PR00359 B-class P450 signature 160 175 3.0E-17 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_07270 5039f167dec76dbf0d70bf841250621f 402 PRINTS PR00359 B-class P450 signature 194 216 3.0E-17 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_07270 5039f167dec76dbf0d70bf841250621f 402 PRINTS PR00359 B-class P450 signature 290 317 3.0E-17 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_07945 97a752872c8e660869980101bf5eb9d7 310 TIGRFAM TIGR02156 PA_CoA_Oxy1: phenylacetate-CoA oxygenase, PaaG subunit 11 299 4.9E-156 T 13-10-2018 IPR011881 1,2-phenylacetyl-CoA epoxidase, subunit A GO:0010124|GO:0097266 KEGG: 00360+1.14.13.149 RAM_07945 97a752872c8e660869980101bf5eb9d7 310 Pfam PF05138 Phenylacetic acid catabolic protein 21 295 7.8E-104 T 13-10-2018 IPR007814 1,2-phenylacetyl-CoA epoxidase, subunit A/C GO:0010124 RAM_07945 97a752872c8e660869980101bf5eb9d7 310 Gene3D G3DSA:1.20.1260.10 4 310 2.7E-133 T 13-10-2018 IPR012347 Ferritin-like RAM_07945 97a752872c8e660869980101bf5eb9d7 310 SUPERFAMILY SSF47240 31 273 8.52E-83 T 13-10-2018 IPR009078 Ferritin-like superfamily RAM_00040 722cbe661867e977fa029de68f0690e3 221 Pfam PF12089 Transmembrane domain of unknown function (DUF3566) 101 219 9.0E-44 T 13-10-2018 IPR021949 Domain of unknown function DUF3566. transmembrane RAM_10125 e7a7e165f1c4a30f7dbf737f364a6f1a 255 SUPERFAMILY SSF52540 15 234 8.12E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_10125 e7a7e165f1c4a30f7dbf737f364a6f1a 255 Gene3D G3DSA:3.40.50.300 8 224 2.1E-52 T 13-10-2018 RAM_10125 e7a7e165f1c4a30f7dbf737f364a6f1a 255 Pfam PF00005 ABC transporter 34 164 1.0E-25 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_10125 e7a7e165f1c4a30f7dbf737f364a6f1a 255 SMART SM00382 41 245 5.8E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_10125 e7a7e165f1c4a30f7dbf737f364a6f1a 255 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_00650 47b8c690d7545240a4177701e3e8fde3 553 SUPERFAMILY SSF88946 10 108 2.38E-17 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_00650 47b8c690d7545240a4177701e3e8fde3 553 Gene3D G3DSA:1.10.1740.10 11 126 5.7E-15 T 13-10-2018 RAM_00650 47b8c690d7545240a4177701e3e8fde3 553 Pfam PF04542 Sigma-70 region 2 35 93 9.0E-10 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_00650 47b8c690d7545240a4177701e3e8fde3 553 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 31 183 2.2E-12 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_00650 47b8c690d7545240a4177701e3e8fde3 553 SUPERFAMILY SSF88659 125 183 9.72E-6 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_00650 47b8c690d7545240a4177701e3e8fde3 553 Pfam PF13490 Putative zinc-finger 199 233 9.7E-8 T 13-10-2018 IPR027383 Putative zinc-finger RAM_48010 dd04779a617e38f56bfb88173f192de2 184 Pfam PF01424 R3H domain 123 182 7.3E-15 T 13-10-2018 IPR001374 R3H domain GO:0003676 RAM_48010 dd04779a617e38f56bfb88173f192de2 184 Gene3D G3DSA:3.30.1370.50 119 184 2.6E-22 T 13-10-2018 IPR036867 R3H domain superfamily GO:0003676 RAM_48010 dd04779a617e38f56bfb88173f192de2 184 SUPERFAMILY SSF82708 138 182 1.9E-10 T 13-10-2018 IPR036867 R3H domain superfamily GO:0003676 RAM_48010 dd04779a617e38f56bfb88173f192de2 184 SMART SM00393 104 183 9.6E-25 T 13-10-2018 IPR001374 R3H domain GO:0003676 RAM_48010 dd04779a617e38f56bfb88173f192de2 184 Gene3D G3DSA:3.30.300.20 36 118 8.9E-15 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta RAM_06615 9df14e3c418f0ba32c48b73be2f562c1 142 Pfam PF09656 Putative transmembrane protein (PGPGW) 9 60 8.4E-14 T 13-10-2018 IPR019099 Uncharacterised protein family PGPGW, transmembrane RAM_29915 cbdd9418b70ffcf34a4066b9b24d2e22 143 Gene3D G3DSA:2.60.40.790 1 133 7.1E-29 T 13-10-2018 IPR008978 HSP20-like chaperone RAM_29915 cbdd9418b70ffcf34a4066b9b24d2e22 143 Pfam PF00011 Hsp20/alpha crystallin family 36 132 5.5E-19 T 13-10-2018 IPR002068 Alpha crystallin/Hsp20 domain RAM_29915 cbdd9418b70ffcf34a4066b9b24d2e22 143 SUPERFAMILY SSF49764 8 132 6.02E-31 T 13-10-2018 IPR008978 HSP20-like chaperone RAM_41080 297db45acb3ef9782d431895511d8bc3 261 Gene3D G3DSA:3.30.450.40 87 260 2.8E-51 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_41080 297db45acb3ef9782d431895511d8bc3 261 SUPERFAMILY SSF55781 71 258 9.16E-47 T 13-10-2018 RAM_41080 297db45acb3ef9782d431895511d8bc3 261 SUPERFAMILY SSF46785 14 85 7.81E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_41080 297db45acb3ef9782d431895511d8bc3 261 Gene3D G3DSA:1.10.10.10 12 86 2.8E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_41080 297db45acb3ef9782d431895511d8bc3 261 SMART SM00346 14 103 1.1E-17 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RAM_41080 297db45acb3ef9782d431895511d8bc3 261 Pfam PF01614 Bacterial transcriptional regulator 132 254 7.6E-35 T 13-10-2018 IPR014757 Transcription regulator IclR, C-terminal RAM_41080 297db45acb3ef9782d431895511d8bc3 261 Pfam PF09339 IclR helix-turn-helix domain 16 65 7.1E-15 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RAM_32645 f8b13e919f9f841d370584d02e67561e 249 Gene3D G3DSA:1.10.12.10 196 249 2.9E-16 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal RAM_32645 f8b13e919f9f841d370584d02e67561e 249 Gene3D G3DSA:3.90.226.10 1 195 1.5E-64 T 13-10-2018 RAM_32645 f8b13e919f9f841d370584d02e67561e 249 Pfam PF00378 Enoyl-CoA hydratase/isomerase 11 248 7.2E-59 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RAM_32645 f8b13e919f9f841d370584d02e67561e 249 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 94 114 - T 13-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 RAM_32645 f8b13e919f9f841d370584d02e67561e 249 SUPERFAMILY SSF52096 3 248 2.96E-73 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_10985 a5fdc54c192e89e3a4d3e61b888cac31 394 Pfam PF03734 L,D-transpeptidase catalytic domain 248 363 1.5E-16 T 13-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 RAM_10985 a5fdc54c192e89e3a4d3e61b888cac31 394 Gene3D G3DSA:2.60.40.3780 35 131 4.6E-24 T 13-10-2018 RAM_10985 a5fdc54c192e89e3a4d3e61b888cac31 394 SUPERFAMILY SSF141523 237 363 8.11E-25 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like RAM_10985 a5fdc54c192e89e3a4d3e61b888cac31 394 Gene3D G3DSA:2.40.440.10 237 378 3.0E-92 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like RAM_10985 a5fdc54c192e89e3a4d3e61b888cac31 394 Gene3D G3DSA:2.60.40.3710 148 390 3.0E-92 T 13-10-2018 RAM_24860 dd826957a5b436d86521344a1b4f8190 326 PIRSF PIRSF016838 1 323 1.3E-118 T 13-10-2018 IPR028349 Protein PafC RAM_24860 dd826957a5b436d86521344a1b4f8190 326 Pfam PF13280 WYL domain 147 313 8.8E-32 T 13-10-2018 IPR026881 WYL domain RAM_16875 197df0b653ca03cee0c58deefa41c145 392 Gene3D G3DSA:2.60.120.200 50 283 2.5E-14 T 13-10-2018 RAM_16875 197df0b653ca03cee0c58deefa41c145 392 Gene3D G3DSA:2.10.10.20 342 392 8.7E-14 T 13-10-2018 RAM_16875 197df0b653ca03cee0c58deefa41c145 392 SUPERFAMILY SSF49899 41 278 1.43E-13 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily RAM_16875 197df0b653ca03cee0c58deefa41c145 392 SMART SM00495 347 389 6.1E-10 T 13-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 RAM_16875 197df0b653ca03cee0c58deefa41c145 392 SUPERFAMILY SSF51055 343 392 2.75E-13 T 13-10-2018 IPR036573 Carbohydrate-binding module superfamily 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 RAM_38520 765552c51fdf63a111083ca0a7c99eee 340 Pfam PF00296 Luciferase-like monooxygenase 34 257 2.7E-26 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_38520 765552c51fdf63a111083ca0a7c99eee 340 Gene3D G3DSA:3.20.20.30 21 333 2.8E-53 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_38520 765552c51fdf63a111083ca0a7c99eee 340 SUPERFAMILY SSF51679 20 330 1.88E-49 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_10820 1b0aa7c8e5fbf8ecb55034f1d8596d73 142 Pfam PF14430 Immunity protein Imm1 21 137 7.2E-30 T 13-10-2018 IPR025680 Immunity protein Imm1 RAM_09060 30b1f18322e36cdedf0369ebfef45416 156 SUPERFAMILY SSF81923 16 62 4.32E-5 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 RAM_09060 30b1f18322e36cdedf0369ebfef45416 156 Gene3D G3DSA:1.10.1780.10 14 155 7.8E-17 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 RAM_09060 30b1f18322e36cdedf0369ebfef45416 156 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 20 64 3.4E-7 T 13-10-2018 IPR004176 Clp, N-terminal RAM_09060 30b1f18322e36cdedf0369ebfef45416 156 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 133 150 1.2 T 13-10-2018 IPR004176 Clp, N-terminal RAM_26430 e603222f03eaa4f0c7d9754e44c49f92 361 SUPERFAMILY SSF81296 19 211 2.66E-46 T 13-10-2018 IPR014756 Immunoglobulin E-set RAM_26430 e603222f03eaa4f0c7d9754e44c49f92 361 Pfam PF00553 Cellulose binding domain 264 360 1.5E-25 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_26430 e603222f03eaa4f0c7d9754e44c49f92 361 Gene3D G3DSA:2.70.50.50 19 212 5.8E-64 T 13-10-2018 RAM_26430 e603222f03eaa4f0c7d9754e44c49f92 361 SMART SM00637 264 358 5.5E-34 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_26430 e603222f03eaa4f0c7d9754e44c49f92 361 Gene3D G3DSA:2.60.40.290 258 361 4.1E-28 T 13-10-2018 IPR012291 CBM2, carbohydrate-binding domain superfamily GO:0004553|GO:0030247 RAM_26430 e603222f03eaa4f0c7d9754e44c49f92 361 SUPERFAMILY SSF49384 259 356 6.07E-29 T 13-10-2018 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily GO:0030246 RAM_26430 e603222f03eaa4f0c7d9754e44c49f92 361 Pfam PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading 19 207 5.1E-42 T 13-10-2018 IPR004302 Cellulose/chitin-binding protein, N-terminal RAM_09490 3909d03331c626d3b92a68a44d2e0df4 174 SUPERFAMILY SSF54292 2 78 7.21E-22 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RAM_09490 3909d03331c626d3b92a68a44d2e0df4 174 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 5 57 4.5E-5 T 13-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RAM_09490 3909d03331c626d3b92a68a44d2e0df4 174 SUPERFAMILY SSF47741 84 154 2.22E-34 T 13-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily RAM_09490 3909d03331c626d3b92a68a44d2e0df4 174 Gene3D G3DSA:3.10.20.30 1 75 3.5E-25 T 13-10-2018 IPR012675 Beta-grasp domain superfamily RAM_09490 3909d03331c626d3b92a68a44d2e0df4 174 Pfam PF01799 [2Fe-2S] binding domain 73 145 2.2E-31 T 13-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RAM_09490 3909d03331c626d3b92a68a44d2e0df4 174 Gene3D G3DSA:1.10.150.120 76 171 7.8E-36 T 13-10-2018 RAM_25445 3f16294d3d51b9b954d55f9f510a8304 292 Pfam PF00561 alpha/beta hydrolase fold 49 155 1.5E-15 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_25445 3f16294d3d51b9b954d55f9f510a8304 292 SUPERFAMILY SSF53474 30 264 3.73E-40 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_25445 3f16294d3d51b9b954d55f9f510a8304 292 PRINTS PR00111 Alpha/beta hydrolase fold signature 135 148 7.7E-8 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_25445 3f16294d3d51b9b954d55f9f510a8304 292 PRINTS PR00111 Alpha/beta hydrolase fold signature 75 90 7.7E-8 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_25445 3f16294d3d51b9b954d55f9f510a8304 292 PRINTS PR00111 Alpha/beta hydrolase fold signature 234 248 7.7E-8 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_25445 3f16294d3d51b9b954d55f9f510a8304 292 PRINTS PR00111 Alpha/beta hydrolase fold signature 121 134 7.7E-8 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_25445 3f16294d3d51b9b954d55f9f510a8304 292 Gene3D G3DSA:3.40.50.1820 23 288 1.2E-37 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_38560 24b77e4bd84e1e44fdecb8e8f5335bd7 358 SUPERFAMILY SSF51735 5 144 9.25E-11 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_38560 24b77e4bd84e1e44fdecb8e8f5335bd7 358 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 5 66 6.2E-8 T 13-10-2018 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RAM_38560 24b77e4bd84e1e44fdecb8e8f5335bd7 358 Gene3D G3DSA:3.40.50.720 1 109 7.2E-16 T 13-10-2018 RAM_34420 66f6a091bd8abe6739b21cee87a720fc 267 PIRSF PIRSF006648 2 266 2.5E-24 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 RAM_34420 66f6a091bd8abe6739b21cee87a720fc 267 Pfam PF01061 ABC-2 type transporter 24 229 3.0E-18 T 13-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 RAM_34420 66f6a091bd8abe6739b21cee87a720fc 267 PRINTS PR00164 ABC-2 type transport system membrane protein signature 188 207 1.1E-7 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 RAM_34420 66f6a091bd8abe6739b21cee87a720fc 267 PRINTS PR00164 ABC-2 type transport system membrane protein signature 35 56 1.1E-7 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 RAM_34420 66f6a091bd8abe6739b21cee87a720fc 267 PRINTS PR00164 ABC-2 type transport system membrane protein signature 208 227 1.1E-7 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 RAM_16245 dbf6729b58aff42b15ade3c68a612942 604 Gene3D G3DSA:1.50.10.100 17 346 3.4E-50 T 13-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 RAM_16245 dbf6729b58aff42b15ade3c68a612942 604 Pfam PF07940 Heparinase II/III-like protein 397 520 1.4E-7 T 13-10-2018 IPR012480 Heparinase II/III-like GO:0016829 RAM_16245 dbf6729b58aff42b15ade3c68a612942 604 Gene3D G3DSA:2.70.98.70 384 524 7.0E-9 T 13-10-2018 RAM_16245 dbf6729b58aff42b15ade3c68a612942 604 SUPERFAMILY SSF48230 95 323 8.79E-10 T 13-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 RAM_45230 ff21e07e7f007af3e413b36924cf947e 165 Gene3D G3DSA:3.40.50.2020 4 158 8.3E-36 T 13-10-2018 RAM_45230 ff21e07e7f007af3e413b36924cf947e 165 Pfam PF00156 Phosphoribosyl transferase domain 13 151 8.0E-18 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 RAM_45230 ff21e07e7f007af3e413b36924cf947e 165 SUPERFAMILY SSF53271 8 150 2.15E-25 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like RAM_29175 2d1ff27ffe8f7fa418144ab2f8db540d 96 Pfam PF03795 YCII-related domain 9 81 1.7E-14 T 13-10-2018 IPR005545 YCII-related RAM_29175 2d1ff27ffe8f7fa418144ab2f8db540d 96 Gene3D G3DSA:3.30.70.1060 1 96 7.0E-30 T 13-10-2018 RAM_29175 2d1ff27ffe8f7fa418144ab2f8db540d 96 SUPERFAMILY SSF54909 8 92 6.7E-24 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_35915 b424c2e36e4e70281845c00b4cfd1e51 225 Gene3D G3DSA:3.40.50.1820 7 222 7.1E-51 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_35915 b424c2e36e4e70281845c00b4cfd1e51 225 SUPERFAMILY SSF53474 13 223 1.95E-41 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_35915 b424c2e36e4e70281845c00b4cfd1e51 225 Pfam PF01738 Dienelactone hydrolase family 13 222 7.2E-47 T 13-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 RAM_28500 4388e85981703c8b9a5ec70c220403a7 389 Pfam PF01594 AI-2E family transporter 41 352 5.5E-58 T 13-10-2018 IPR002549 Transmembrane protein TqsA-like RAM_19225 0ea47dc94040840ef958a73d73a09ed0 124 SUPERFAMILY SSF54909 23 114 7.15E-14 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_19225 0ea47dc94040840ef958a73d73a09ed0 124 Gene3D G3DSA:3.30.70.100 19 113 2.6E-18 T 13-10-2018 RAM_15080 42c2aa905d65e132426a1f360b592e27 230 Pfam PF12840 Helix-turn-helix domain 7 67 1.5E-10 T 13-10-2018 RAM_15080 42c2aa905d65e132426a1f360b592e27 230 SMART SM00418 8 87 1.5E-13 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_15080 42c2aa905d65e132426a1f360b592e27 230 SUPERFAMILY SSF46785 2 90 1.52E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_15080 42c2aa905d65e132426a1f360b592e27 230 Gene3D G3DSA:1.10.10.10 2 99 8.1E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_22025 deb2a8e8306827106e4543d543d9f40f 389 SUPERFAMILY SSF47240 27 380 2.03E-83 T 13-10-2018 IPR009078 Ferritin-like superfamily RAM_22025 deb2a8e8306827106e4543d543d9f40f 389 Gene3D G3DSA:1.10.620.20 2 383 3.8E-112 T 13-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 RAM_22025 deb2a8e8306827106e4543d543d9f40f 389 Pfam PF02332 Methane/Phenol/Toluene Hydroxylase 106 318 3.7E-46 T 13-10-2018 IPR003430 Methane/phenol/toluene hydroxylase GO:0006725|GO:0055114 RAM_30265 6eb77dc51e1ba6cfc9b5507cd6d76d81 276 Gene3D G3DSA:3.40.50.1820 2 276 1.6E-37 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_30265 6eb77dc51e1ba6cfc9b5507cd6d76d81 276 SUPERFAMILY SSF53474 3 273 3.16E-38 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_30265 6eb77dc51e1ba6cfc9b5507cd6d76d81 276 Pfam PF12697 Alpha/beta hydrolase family 22 268 1.8E-12 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_21505 e5c0f2e22ba93544eceb8d459af23362 500 Pfam PF01494 FAD binding domain 1 352 4.4E-69 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_21505 e5c0f2e22ba93544eceb8d459af23362 500 Gene3D G3DSA:3.40.30.120 396 500 3.6E-30 T 13-10-2018 RAM_21505 e5c0f2e22ba93544eceb8d459af23362 500 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 287 302 3.7E-31 T 13-10-2018 RAM_21505 e5c0f2e22ba93544eceb8d459af23362 500 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 338 354 3.7E-31 T 13-10-2018 RAM_21505 e5c0f2e22ba93544eceb8d459af23362 500 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 320 338 3.7E-31 T 13-10-2018 RAM_21505 e5c0f2e22ba93544eceb8d459af23362 500 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 302 318 3.7E-31 T 13-10-2018 RAM_21505 e5c0f2e22ba93544eceb8d459af23362 500 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 166 181 3.7E-31 T 13-10-2018 RAM_21505 e5c0f2e22ba93544eceb8d459af23362 500 SUPERFAMILY SSF51905 1 365 9.82E-59 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_21505 e5c0f2e22ba93544eceb8d459af23362 500 Gene3D G3DSA:3.30.70.2450 195 276 9.2E-101 T 13-10-2018 RAM_21505 e5c0f2e22ba93544eceb8d459af23362 500 Gene3D G3DSA:3.50.50.60 1 351 9.2E-101 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_00925 5a6923a5b246a30091e4ca2d24003ace 205 Gene3D G3DSA:3.40.50.1240 1 203 3.8E-40 T 13-10-2018 IPR029033 Histidine phosphatase superfamily RAM_00925 5a6923a5b246a30091e4ca2d24003ace 205 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 3 203 2.0E-44 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 RAM_00925 5a6923a5b246a30091e4ca2d24003ace 205 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 5 14 - T 13-10-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824 RAM_00925 5a6923a5b246a30091e4ca2d24003ace 205 SMART SM00855 2 161 3.3E-18 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 RAM_00925 5a6923a5b246a30091e4ca2d24003ace 205 PIRSF PIRSF000709 2 133 2.6E-5 T 13-10-2018 RAM_00925 5a6923a5b246a30091e4ca2d24003ace 205 SUPERFAMILY SSF53254 2 204 2.88E-42 T 13-10-2018 IPR029033 Histidine phosphatase superfamily RAM_38465 507cf485238b7df39a3d3a4a56fb84e0 514 Gene3D G3DSA:2.60.40.1180 10 504 3.9E-192 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta RAM_38465 507cf485238b7df39a3d3a4a56fb84e0 514 SUPERFAMILY SSF51011 366 506 2.19E-19 T 13-10-2018 RAM_38465 507cf485238b7df39a3d3a4a56fb84e0 514 SMART SM00813 290 500 1.5E-51 T 13-10-2018 IPR010720 Alpha-L-arabinofuranosidase, C-terminal GO:0046373|GO:0046556 KEGG: 00520+3.2.1.55 RAM_38465 507cf485238b7df39a3d3a4a56fb84e0 514 SUPERFAMILY SSF51445 17 382 6.33E-102 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_38465 507cf485238b7df39a3d3a4a56fb84e0 514 Pfam PF06964 Alpha-L-arabinofuranosidase C-terminal domain 290 500 2.8E-30 T 13-10-2018 IPR010720 Alpha-L-arabinofuranosidase, C-terminal GO:0046373|GO:0046556 KEGG: 00520+3.2.1.55 RAM_38465 507cf485238b7df39a3d3a4a56fb84e0 514 Gene3D G3DSA:3.20.20.80 17 385 3.9E-192 T 13-10-2018 RAM_26725 5f50825fbabc64ae7addb14380bceff7 251 Pfam PF01925 Sulfite exporter TauE/SafE 12 246 2.8E-30 T 13-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 RAM_05120 917f167e366ab618c23e0383229aebb7 508 Gene3D G3DSA:1.10.260.150 62 383 2.8E-61 T 13-10-2018 RAM_05120 917f167e366ab618c23e0383229aebb7 508 Pfam PF03816 Cell envelope-related transcriptional attenuator domain 114 287 3.0E-37 T 13-10-2018 IPR004474 Cell envelope-related transcriptional attenuator domain RAM_05120 917f167e366ab618c23e0383229aebb7 508 Pfam PF13399 LytR cell envelope-related transcriptional attenuator 386 470 4.2E-11 T 13-10-2018 IPR027381 Putative LytR/CpsA/Psr regulator, C-terminal domain RAM_05120 917f167e366ab618c23e0383229aebb7 508 TIGRFAM TIGR00350 lytR_cpsA_psr: cell envelope-related function transcriptional attenuator common domain 114 287 3.8E-29 T 13-10-2018 IPR004474 Cell envelope-related transcriptional attenuator domain RAM_18880 8e8842220ebd989755b49ec7a12750dd 309 SUPERFAMILY SSF50129 2 147 5.02E-35 T 13-10-2018 IPR011032 GroES-like superfamily RAM_18880 8e8842220ebd989755b49ec7a12750dd 309 Pfam PF13602 Zinc-binding dehydrogenase 184 304 1.2E-18 T 13-10-2018 RAM_18880 8e8842220ebd989755b49ec7a12750dd 309 Gene3D G3DSA:3.90.180.10 5 303 1.2E-80 T 13-10-2018 RAM_18880 8e8842220ebd989755b49ec7a12750dd 309 SUPERFAMILY SSF51735 114 275 2.59E-30 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_18880 8e8842220ebd989755b49ec7a12750dd 309 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 87 6.5E-7 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_18880 8e8842220ebd989755b49ec7a12750dd 309 Gene3D G3DSA:3.40.50.720 125 255 1.2E-80 T 13-10-2018 RAM_18880 8e8842220ebd989755b49ec7a12750dd 309 SMART SM00829 7 304 7.4E-14 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_11355 0a1bdf020f71023abf7dfd83f6e37482 437 Pfam PF06013 Proteins of 100 residues with WXG 25 103 2.6E-6 T 13-10-2018 IPR010310 Type VII secretion system ESAT-6-like RAM_11355 0a1bdf020f71023abf7dfd83f6e37482 437 Gene3D G3DSA:1.10.287.1060 24 109 2.1E-9 T 13-10-2018 RAM_11355 0a1bdf020f71023abf7dfd83f6e37482 437 SUPERFAMILY SSF140459 9 114 2.33E-9 T 13-10-2018 RAM_22120 f23a7549d04243e9ab72e5ee1b048188 271 SUPERFAMILY SSF161098 4 270 1.96E-66 T 13-10-2018 IPR035906 MetI-like superfamily RAM_22120 f23a7549d04243e9ab72e5ee1b048188 271 Gene3D G3DSA:1.10.3720.10 1 258 2.0E-57 T 13-10-2018 IPR035906 MetI-like superfamily RAM_22120 f23a7549d04243e9ab72e5ee1b048188 271 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 91 264 2.5E-17 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_42925 2f4718c0d6462732533ab01ab58969a2 140 Pfam PF04075 F420H(2)-dependent quinone reductase 14 139 3.3E-42 T 13-10-2018 IPR004378 F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 RAM_42925 2f4718c0d6462732533ab01ab58969a2 140 TIGRFAM TIGR00026 hi_GC_TIGR00026: deazaflavin-dependent oxidoreductase, nitroreductase family 27 139 9.5E-31 T 13-10-2018 IPR004378 F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 RAM_42925 2f4718c0d6462732533ab01ab58969a2 140 SUPERFAMILY SSF50475 28 118 3.54E-8 T 13-10-2018 RAM_42925 2f4718c0d6462732533ab01ab58969a2 140 Gene3D G3DSA:2.30.110.10 2 140 3.7E-52 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_14110 1978eb8bb08d2b867e0eb568df03d2e8 258 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 4 249 1.4E-17 T 13-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase RAM_14110 1978eb8bb08d2b867e0eb568df03d2e8 258 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 257 4.5E-71 T 13-10-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 RAM_14110 1978eb8bb08d2b867e0eb568df03d2e8 258 SUPERFAMILY SSF56219 1 258 6.81E-67 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily RAM_14110 1978eb8bb08d2b867e0eb568df03d2e8 258 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 1 255 5.5E-58 T 13-10-2018 RAM_14110 1978eb8bb08d2b867e0eb568df03d2e8 258 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 27 36 - T 13-10-2018 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 RAM_14110 1978eb8bb08d2b867e0eb568df03d2e8 258 Gene3D G3DSA:3.60.10.10 1 258 3.5E-67 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily RAM_43665 dbf2b86379e3ed60f596d9809fb5017f 124 PIRSF PIRSF028777 1 124 6.9E-53 T 13-10-2018 IPR031308 Uncharacterised conserved protein UCP028777 RAM_43665 dbf2b86379e3ed60f596d9809fb5017f 124 Pfam PF03733 Inner membrane component domain 4 54 4.3E-20 T 13-10-2018 IPR005185 Inner membrane component domain RAM_43665 dbf2b86379e3ed60f596d9809fb5017f 124 Pfam PF03733 Inner membrane component domain 68 118 4.9E-18 T 13-10-2018 IPR005185 Inner membrane component domain RAM_27605 902afd563bd73f89b40aeb17aae42baa 269 Pfam PF01061 ABC-2 type transporter 14 232 6.1E-17 T 13-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 RAM_27605 902afd563bd73f89b40aeb17aae42baa 269 PIRSF PIRSF006648 1 268 1.2E-16 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 RAM_00370 a991bd84ff34f3ab54238c84a7f92315 461 Gene3D G3DSA:3.90.1300.10 2 459 1.8E-124 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RAM_00370 a991bd84ff34f3ab54238c84a7f92315 461 SUPERFAMILY SSF75304 1 459 1.44E-118 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RAM_00370 a991bd84ff34f3ab54238c84a7f92315 461 Pfam PF01425 Amidase 25 442 8.8E-86 T 13-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RAM_03950 fcc821f508f4184845b366678626ef1d 377 Gene3D G3DSA:3.20.20.70 16 376 2.1E-85 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_03950 fcc821f508f4184845b366678626ef1d 377 SUPERFAMILY SSF51412 9 376 2.44E-59 T 13-10-2018 RAM_03950 fcc821f508f4184845b366678626ef1d 377 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 18 307 8.9E-35 T 13-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 RAM_03950 fcc821f508f4184845b366678626ef1d 377 TIGRFAM TIGR01304 IMP_DH_rel_2: IMP dehydrogenase family protein 5 375 1.6E-164 T 13-10-2018 IPR005992 IMP dehydrogenase-related 2 GO:0016491|GO:0055114 RAM_03950 fcc821f508f4184845b366678626ef1d 377 SMART SM01240 15 377 9.3E-16 T 13-10-2018 RAM_15015 028062c0f3a440e05b387cf1c6933489 204 Pfam PF08281 Sigma-70, region 4 144 196 2.2E-12 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_15015 028062c0f3a440e05b387cf1c6933489 204 Gene3D G3DSA:1.10.1740.10 26 108 3.1E-29 T 13-10-2018 RAM_15015 028062c0f3a440e05b387cf1c6933489 204 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 40 200 4.9E-23 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_15015 028062c0f3a440e05b387cf1c6933489 204 SUPERFAMILY SSF88946 26 116 2.94E-21 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_15015 028062c0f3a440e05b387cf1c6933489 204 Pfam PF04542 Sigma-70 region 2 44 111 9.4E-15 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_15015 028062c0f3a440e05b387cf1c6933489 204 SUPERFAMILY SSF88659 137 200 6.76E-15 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_15015 028062c0f3a440e05b387cf1c6933489 204 Gene3D G3DSA:1.10.10.10 110 203 1.3E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_31160 10e5f19ec1ed3b9ea9d2b412b49166c9 237 Gene3D G3DSA:1.10.10.1320 5 63 2.3E-12 T 13-10-2018 RAM_01600 c4a8c539c6727d95913b8a82d3b75f1a 320 Pfam PF07859 alpha/beta hydrolase fold 84 292 2.7E-70 T 13-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 RAM_01600 c4a8c539c6727d95913b8a82d3b75f1a 320 SUPERFAMILY SSF53474 47 317 3.62E-70 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_01600 c4a8c539c6727d95913b8a82d3b75f1a 320 Gene3D G3DSA:3.40.50.1820 9 320 1.2E-89 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_12765 4cbd98694a71608d6ff64616871c67a9 302 SUPERFAMILY SSF54637 13 169 2.82E-18 T 13-10-2018 IPR029069 HotDog domain superfamily RAM_12765 4cbd98694a71608d6ff64616871c67a9 302 Gene3D G3DSA:3.10.129.10 1 171 9.5E-63 T 13-10-2018 RAM_12765 4cbd98694a71608d6ff64616871c67a9 302 SUPERFAMILY SSF50249 174 295 2.74E-24 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_12765 4cbd98694a71608d6ff64616871c67a9 302 Pfam PF01796 DUF35 OB-fold domain, acyl-CoA-associated 224 287 9.3E-22 T 13-10-2018 IPR002878 Domain of unknown function DUF35, OB-fold, C-terminal RAM_12765 4cbd98694a71608d6ff64616871c67a9 302 Pfam PF13452 N-terminal half of MaoC dehydratase 21 154 4.3E-19 T 13-10-2018 IPR039569 N-terminal of MaoC-like dehydratase Reactome: R-HSA-193368|Reactome: R-HSA-2046106|Reactome: R-HSA-389887|Reactome: R-HSA-390247|Reactome: R-HSA-9033241|Reactome: R-HSA-9033500 RAM_32940 2a535cdcfb64cc695b65c708eba2c2dc 769 SUPERFAMILY SSF52129 3 218 5.23E-20 T 13-10-2018 IPR029030 Caspase-like domain superfamily RAM_32940 2a535cdcfb64cc695b65c708eba2c2dc 769 Gene3D G3DSA:3.40.50.1460 2 237 4.0E-27 T 13-10-2018 RAM_32940 2a535cdcfb64cc695b65c708eba2c2dc 769 Gene3D G3DSA:3.30.420.40 281 630 1.4E-74 T 13-10-2018 RAM_32940 2a535cdcfb64cc695b65c708eba2c2dc 769 PRINTS PR00301 70kDa heat shock protein signature 451 461 4.2E-13 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RAM_32940 2a535cdcfb64cc695b65c708eba2c2dc 769 PRINTS PR00301 70kDa heat shock protein signature 589 605 4.2E-13 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RAM_32940 2a535cdcfb64cc695b65c708eba2c2dc 769 PRINTS PR00301 70kDa heat shock protein signature 279 292 4.2E-13 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RAM_32940 2a535cdcfb64cc695b65c708eba2c2dc 769 PRINTS PR00301 70kDa heat shock protein signature 620 640 4.2E-13 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RAM_32940 2a535cdcfb64cc695b65c708eba2c2dc 769 PRINTS PR00301 70kDa heat shock protein signature 308 320 4.2E-13 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RAM_32940 2a535cdcfb64cc695b65c708eba2c2dc 769 PRINTS PR00301 70kDa heat shock protein signature 730 746 4.2E-13 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RAM_32940 2a535cdcfb64cc695b65c708eba2c2dc 769 SUPERFAMILY SSF53067 439 639 7.07E-26 T 13-10-2018 RAM_32940 2a535cdcfb64cc695b65c708eba2c2dc 769 Gene3D G3DSA:3.90.640.10 477 558 1.4E-74 T 13-10-2018 RAM_32940 2a535cdcfb64cc695b65c708eba2c2dc 769 Pfam PF00012 Hsp70 protein 359 660 2.6E-43 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RAM_32940 2a535cdcfb64cc695b65c708eba2c2dc 769 Pfam PF00012 Hsp70 protein 282 355 7.9E-7 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RAM_32940 2a535cdcfb64cc695b65c708eba2c2dc 769 Gene3D G3DSA:3.30.420.40 438 622 1.4E-74 T 13-10-2018 RAM_32940 2a535cdcfb64cc695b65c708eba2c2dc 769 SUPERFAMILY SSF53067 280 431 6.99E-32 T 13-10-2018 RAM_32940 2a535cdcfb64cc695b65c708eba2c2dc 769 Pfam PF00656 Caspase domain 3 229 1.7E-20 T 13-10-2018 RAM_12260 5fe4be395dfe7a538f9b4db743afffea 222 SMART SM00448 12 125 1.3E-30 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_12260 5fe4be395dfe7a538f9b4db743afffea 222 ProSitePatterns PS00622 LuxR-type HTH domain signature. 175 202 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_12260 5fe4be395dfe7a538f9b4db743afffea 222 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 175 191 2.5E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_12260 5fe4be395dfe7a538f9b4db743afffea 222 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 161 175 2.5E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_12260 5fe4be395dfe7a538f9b4db743afffea 222 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 191 203 2.5E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_12260 5fe4be395dfe7a538f9b4db743afffea 222 SUPERFAMILY SSF52172 12 192 1.51E-35 T 13-10-2018 IPR011006 CheY-like superfamily RAM_12260 5fe4be395dfe7a538f9b4db743afffea 222 Gene3D G3DSA:3.40.50.12740 12 221 1.3E-68 T 13-10-2018 RAM_12260 5fe4be395dfe7a538f9b4db743afffea 222 Pfam PF00072 Response regulator receiver domain 14 125 4.8E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_12260 5fe4be395dfe7a538f9b4db743afffea 222 Pfam PF00196 Bacterial regulatory proteins, luxR family 161 215 2.8E-18 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_12260 5fe4be395dfe7a538f9b4db743afffea 222 SMART SM00421 158 215 9.4E-24 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_19680 e8399976a307ff05c0df7bcdb8999600 379 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 11 124 2.2E-20 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_19680 e8399976a307ff05c0df7bcdb8999600 379 Gene3D G3DSA:1.10.540.10 9 126 2.2E-30 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_19680 e8399976a307ff05c0df7bcdb8999600 379 Gene3D G3DSA:1.20.140.10 238 377 2.2E-37 T 13-10-2018 RAM_19680 e8399976a307ff05c0df7bcdb8999600 379 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 230 371 2.3E-28 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_19680 e8399976a307ff05c0df7bcdb8999600 379 SUPERFAMILY SSF47203 230 376 3.54E-37 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_19680 e8399976a307ff05c0df7bcdb8999600 379 Gene3D G3DSA:2.40.110.10 127 232 4.3E-18 T 13-10-2018 RAM_19680 e8399976a307ff05c0df7bcdb8999600 379 SUPERFAMILY SSF56645 10 227 2.62E-44 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_19680 e8399976a307ff05c0df7bcdb8999600 379 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 128 201 6.5E-11 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RAM_27670 ee60a0bf53eff8d31dbdd7a9aa56d5d6 101 Pfam PF03992 Antibiotic biosynthesis monooxygenase 22 74 8.0E-10 T 13-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain RAM_27670 ee60a0bf53eff8d31dbdd7a9aa56d5d6 101 Gene3D G3DSA:3.30.70.100 6 100 2.4E-12 T 13-10-2018 RAM_27670 ee60a0bf53eff8d31dbdd7a9aa56d5d6 101 SUPERFAMILY SSF54909 7 98 9.06E-16 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_10070 a37d2173bbd2557f8fce773b27a12646 759 SUPERFAMILY SSF52518 377 599 3.46E-49 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_10070 a37d2173bbd2557f8fce773b27a12646 759 Gene3D G3DSA:3.40.50.970 2 377 1.0E-78 T 13-10-2018 RAM_10070 a37d2173bbd2557f8fce773b27a12646 759 SMART SM00861 395 599 5.6E-6 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain RAM_10070 a37d2173bbd2557f8fce773b27a12646 759 SUPERFAMILY SSF52922 614 758 5.76E-22 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RAM_10070 a37d2173bbd2557f8fce773b27a12646 759 Gene3D G3DSA:3.40.50.970 378 608 2.8E-76 T 13-10-2018 RAM_10070 a37d2173bbd2557f8fce773b27a12646 759 Gene3D G3DSA:3.40.50.920 620 756 3.7E-25 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RAM_10070 a37d2173bbd2557f8fce773b27a12646 759 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 66 215 1.6E-8 T 13-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 RAM_10070 a37d2173bbd2557f8fce773b27a12646 759 PIRSF PIRSF000156 5 759 1.8E-68 T 13-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 RAM_10070 a37d2173bbd2557f8fce773b27a12646 759 SUPERFAMILY SSF52518 6 347 4.77E-63 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_09940 ec921d13a70137ac0981ffbdbf6d9010 170 SUPERFAMILY SSF50346 98 167 8.37E-16 T 13-10-2018 IPR011033 PRC-barrel-like superfamily RAM_09940 ec921d13a70137ac0981ffbdbf6d9010 170 Gene3D G3DSA:2.40.30.60 2 90 5.6E-23 T 13-10-2018 IPR036976 RimM, N-terminal domain superfamily GO:0006364 RAM_09940 ec921d13a70137ac0981ffbdbf6d9010 170 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 3 167 3.5E-40 T 13-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 RAM_09940 ec921d13a70137ac0981ffbdbf6d9010 170 Pfam PF05239 PRC-barrel domain 95 168 1.8E-10 T 13-10-2018 IPR027275 PRC-barrel domain RAM_09940 ec921d13a70137ac0981ffbdbf6d9010 170 Pfam PF01782 RimM N-terminal domain 4 85 2.0E-21 T 13-10-2018 IPR002676 RimM, N-terminal GO:0006364 RAM_09940 ec921d13a70137ac0981ffbdbf6d9010 170 SUPERFAMILY SSF50447 3 90 2.47E-18 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RAM_09940 ec921d13a70137ac0981ffbdbf6d9010 170 Gene3D G3DSA:2.30.30.240 94 170 9.5E-11 T 13-10-2018 RAM_09940 ec921d13a70137ac0981ffbdbf6d9010 170 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 2 167 23.325 T 13-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 RAM_00510 c932c1cab60ecc8444e7f5d4c120b0ef 549 Pfam PF13482 RNase_H superfamily 450 535 6.3E-11 T 13-10-2018 IPR038720 YprB, ribonuclease H-like domain RAM_00510 c932c1cab60ecc8444e7f5d4c120b0ef 549 TIGRFAM TIGR03491 TIGR03491: putative RecB family nuclease, TM0106 family 15 535 2.8E-63 T 13-10-2018 IPR019993 RecB family nuclease, TM0106, putative RAM_03230 9391b63ab27bad553ad222e456bde1d1 310 SUPERFAMILY SSF53474 43 284 8.58E-62 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_03230 9391b63ab27bad553ad222e456bde1d1 310 Pfam PF07859 alpha/beta hydrolase fold 77 285 1.5E-59 T 13-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 RAM_03230 9391b63ab27bad553ad222e456bde1d1 310 Gene3D G3DSA:3.40.50.1820 2 308 4.8E-85 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_40925 53743655ec7dceb0f9d602bd33d39182 158 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 7 133 1.9E-13 T 13-10-2018 IPR019587 Polyketide cyclase/dehydrase RAM_40925 53743655ec7dceb0f9d602bd33d39182 158 Gene3D G3DSA:3.30.530.20 2 134 1.3E-46 T 13-10-2018 IPR023393 START-like domain superfamily RAM_40925 53743655ec7dceb0f9d602bd33d39182 158 SUPERFAMILY SSF55961 4 132 6.52E-37 T 13-10-2018 RAM_39215 5e379ad8a010cd79c0d68d196bac014e 133 ProSitePatterns PS00893 Nudix box signature. 40 61 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RAM_39215 5e379ad8a010cd79c0d68d196bac014e 133 Gene3D G3DSA:3.90.79.10 4 133 3.4E-29 T 13-10-2018 RAM_39215 5e379ad8a010cd79c0d68d196bac014e 133 SUPERFAMILY SSF55811 8 132 5.69E-28 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RAM_39215 5e379ad8a010cd79c0d68d196bac014e 133 PRINTS PR00502 NUDIX hydrolase family signature 35 49 2.2E-7 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RAM_39215 5e379ad8a010cd79c0d68d196bac014e 133 PRINTS PR00502 NUDIX hydrolase family signature 49 64 2.2E-7 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RAM_39215 5e379ad8a010cd79c0d68d196bac014e 133 Pfam PF00293 NUDIX domain 11 123 2.2E-19 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RAM_06605 91e9d44c2db9d70eed481223fd088bb8 202 Pfam PF01872 RibD C-terminal domain 115 187 1.6E-7 T 13-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 RAM_06605 91e9d44c2db9d70eed481223fd088bb8 202 Gene3D G3DSA:3.40.430.10 1 196 4.2E-35 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RAM_06605 91e9d44c2db9d70eed481223fd088bb8 202 SUPERFAMILY SSF53597 8 198 2.75E-19 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RAM_26465 364d9f16a7cf26294da7740831236de2 434 Gene3D G3DSA:3.40.190.10 59 361 6.7E-70 T 13-10-2018 RAM_26465 364d9f16a7cf26294da7740831236de2 434 Gene3D G3DSA:3.40.190.10 155 422 6.7E-70 T 13-10-2018 RAM_26465 364d9f16a7cf26294da7740831236de2 434 SUPERFAMILY SSF53850 40 432 4.92E-47 T 13-10-2018 RAM_26465 364d9f16a7cf26294da7740831236de2 434 Pfam PF13416 Bacterial extracellular solute-binding protein 57 362 1.3E-32 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein RAM_29480 0daf56ca245ed6d5700a102be2d873e7 134 Gene3D G3DSA:2.60.120.10 1 133 5.5E-45 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_29480 0daf56ca245ed6d5700a102be2d873e7 134 SUPERFAMILY SSF51182 8 128 7.71E-27 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RAM_29480 0daf56ca245ed6d5700a102be2d873e7 134 Pfam PF07883 Cupin domain 39 96 2.4E-13 T 13-10-2018 IPR013096 Cupin 2, conserved barrel RAM_42595 fca36055909a3f7b152c05986479a830 87 Gene3D G3DSA:1.10.1200.10 2 81 9.3E-17 T 13-10-2018 IPR036736 ACP-like superfamily RAM_42595 fca36055909a3f7b152c05986479a830 87 SUPERFAMILY SSF47336 3 79 9.95E-14 T 13-10-2018 IPR036736 ACP-like superfamily RAM_42595 fca36055909a3f7b152c05986479a830 87 SMART SM00823 Phosphopantetheine attachment site 9 80 8.8E-7 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_42595 fca36055909a3f7b152c05986479a830 87 Pfam PF00550 Phosphopantetheine attachment site 11 76 1.2E-11 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_22215 78d1b49e02db1120696876abe0282e1d 433 Gene3D G3DSA:3.40.190.10 156 425 6.2E-88 T 13-10-2018 RAM_22215 78d1b49e02db1120696876abe0282e1d 433 SUPERFAMILY SSF53850 19 431 6.62E-77 T 13-10-2018 RAM_22215 78d1b49e02db1120696876abe0282e1d 433 Pfam PF01547 Bacterial extracellular solute-binding protein 54 348 3.1E-46 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein RAM_22215 78d1b49e02db1120696876abe0282e1d 433 Gene3D G3DSA:3.40.190.10 59 387 6.2E-88 T 13-10-2018 RAM_29570 7d3e916de7bc964883c8ebb2f7aab6b2 289 Pfam PF12833 Helix-turn-helix domain 202 281 7.1E-23 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_29570 7d3e916de7bc964883c8ebb2f7aab6b2 289 SUPERFAMILY SSF51215 33 101 2.48E-6 T 13-10-2018 IPR037923 Transcription regulator HTH-like RAM_29570 7d3e916de7bc964883c8ebb2f7aab6b2 289 Gene3D G3DSA:1.10.10.60 179 286 1.9E-24 T 13-10-2018 RAM_29570 7d3e916de7bc964883c8ebb2f7aab6b2 289 SMART SM00342 196 279 1.2E-23 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_29570 7d3e916de7bc964883c8ebb2f7aab6b2 289 SUPERFAMILY SSF46689 236 283 5.82E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_29570 7d3e916de7bc964883c8ebb2f7aab6b2 289 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 263 279 4.2E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RAM_29570 7d3e916de7bc964883c8ebb2f7aab6b2 289 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 248 263 4.2E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RAM_26395 81b44d4bc6a1f493b7d5f752ed156128 233 SUPERFAMILY SSF56784 7 217 5.29E-15 T 13-10-2018 IPR036412 HAD-like superfamily RAM_26395 81b44d4bc6a1f493b7d5f752ed156128 233 Gene3D G3DSA:3.40.50.1000 10 192 1.3E-8 T 13-10-2018 IPR023214 HAD superfamily RAM_26395 81b44d4bc6a1f493b7d5f752ed156128 233 Gene3D G3DSA:1.10.150.240 22 85 1.3E-8 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 RAM_17170 d81bfd48ffe95bce1e0c0ec355ea7c81 255 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 18 237 5.7E-53 T 13-10-2018 RAM_17170 d81bfd48ffe95bce1e0c0ec355ea7c81 255 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 10 182 3.2E-4 T 13-10-2018 RAM_17170 d81bfd48ffe95bce1e0c0ec355ea7c81 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 127 135 8.3E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17170 d81bfd48ffe95bce1e0c0ec355ea7c81 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 166 8.3E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17170 d81bfd48ffe95bce1e0c0ec355ea7c81 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 73 84 8.3E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17170 d81bfd48ffe95bce1e0c0ec355ea7c81 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 121 137 1.4E-36 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17170 d81bfd48ffe95bce1e0c0ec355ea7c81 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 166 1.4E-36 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17170 d81bfd48ffe95bce1e0c0ec355ea7c81 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 202 222 1.4E-36 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17170 d81bfd48ffe95bce1e0c0ec355ea7c81 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 184 1.4E-36 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17170 d81bfd48ffe95bce1e0c0ec355ea7c81 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 1.4E-36 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17170 d81bfd48ffe95bce1e0c0ec355ea7c81 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 1.4E-36 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17170 d81bfd48ffe95bce1e0c0ec355ea7c81 255 Gene3D G3DSA:3.40.50.720 1 252 8.2E-69 T 13-10-2018 RAM_17170 d81bfd48ffe95bce1e0c0ec355ea7c81 255 SUPERFAMILY SSF51735 9 237 5.27E-68 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_17170 d81bfd48ffe95bce1e0c0ec355ea7c81 255 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 134 162 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_11445 c8e37150c2947e3e79d0ec506e31c5d2 473 Gene3D G3DSA:2.40.50.900 70 149 1.4E-22 T 13-10-2018 RAM_11445 c8e37150c2947e3e79d0ec506e31c5d2 473 TIGRFAM TIGR03919 T7SS_EccB: type VII secretion protein EccB 3 458 2.2E-84 T 13-10-2018 IPR007795 Type VII secretion system EccB RAM_11445 c8e37150c2947e3e79d0ec506e31c5d2 473 Pfam PF05108 Type VII secretion system ESX-1, transport TM domain B 3 463 5.8E-86 T 13-10-2018 IPR007795 Type VII secretion system EccB RAM_06185 9ef6b775a1d1390aabc32ad13ab1e35a 426 Gene3D G3DSA:1.20.1250.20 8 421 2.9E-47 T 13-10-2018 RAM_06185 9ef6b775a1d1390aabc32ad13ab1e35a 426 Pfam PF07690 Major Facilitator Superfamily 22 354 1.3E-27 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_06185 9ef6b775a1d1390aabc32ad13ab1e35a 426 SUPERFAMILY SSF103473 7 420 3.66E-57 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_27080 14253e6f917ca01382d725c38ef49129 474 Gene3D G3DSA:3.40.462.20 224 417 1.6E-87 T 13-10-2018 RAM_27080 14253e6f917ca01382d725c38ef49129 474 ProSitePatterns PS00862 Oxygen oxidoreductases covalent FAD-binding site. 56 89 - T 13-10-2018 IPR006093 Oxygen oxidoreductase covalent FAD-binding site GO:0016491|GO:0055114 RAM_27080 14253e6f917ca01382d725c38ef49129 474 Pfam PF08031 Berberine and berberine like 420 461 9.3E-13 T 13-10-2018 IPR012951 Berberine/berberine-like GO:0016491|GO:0050660|GO:0055114 RAM_27080 14253e6f917ca01382d725c38ef49129 474 Gene3D G3DSA:3.30.465.50 119 461 1.6E-87 T 13-10-2018 RAM_27080 14253e6f917ca01382d725c38ef49129 474 SUPERFAMILY SSF56176 18 221 5.61E-53 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RAM_27080 14253e6f917ca01382d725c38ef49129 474 Gene3D G3DSA:3.30.43.10 30 108 1.3E-23 T 13-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 RAM_27080 14253e6f917ca01382d725c38ef49129 474 Pfam PF01565 FAD binding domain 57 190 2.0E-31 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RAM_07805 fd26e9b89196af3e27301de4827807b0 457 PIRSF PIRSF002744 6 454 5.6E-116 T 13-10-2018 IPR026030 Purine-cytosine permease Fcy2/21/22 GO:0005215|GO:0016021|GO:0055085 RAM_07805 fd26e9b89196af3e27301de4827807b0 457 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 31 437 2.9E-32 T 13-10-2018 IPR001248 Purine-cytosine permease GO:0016020|GO:0022857|GO:0055085 RAM_07805 fd26e9b89196af3e27301de4827807b0 457 Gene3D G3DSA:1.10.4160.10 22 445 3.2E-27 T 13-10-2018 IPR038271 Purine-cytosine permease superfamily RAM_41770 78ab6b42dbf4013b20a577cf35a1464c 58 Gene3D G3DSA:1.10.10.1320 3 57 6.4E-15 T 13-10-2018 RAM_41770 78ab6b42dbf4013b20a577cf35a1464c 58 Pfam PF13490 Putative zinc-finger 8 36 3.3E-9 T 13-10-2018 IPR027383 Putative zinc-finger RAM_47175 1deb8f5e9ecf0e011e251dd9f3f8aead 471 PRINTS PR01036 Tetracycline resistance protein TetB signature 27 51 1.6E-5 T 13-10-2018 RAM_47175 1deb8f5e9ecf0e011e251dd9f3f8aead 471 PRINTS PR01036 Tetracycline resistance protein TetB signature 118 138 1.6E-5 T 13-10-2018 RAM_47175 1deb8f5e9ecf0e011e251dd9f3f8aead 471 PRINTS PR01036 Tetracycline resistance protein TetB signature 148 172 1.6E-5 T 13-10-2018 RAM_47175 1deb8f5e9ecf0e011e251dd9f3f8aead 471 PRINTS PR01036 Tetracycline resistance protein TetB signature 414 433 1.6E-5 T 13-10-2018 RAM_47175 1deb8f5e9ecf0e011e251dd9f3f8aead 471 Pfam PF07690 Major Facilitator Superfamily 28 423 2.8E-38 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_47175 1deb8f5e9ecf0e011e251dd9f3f8aead 471 Gene3D G3DSA:1.20.1250.20 274 471 9.6E-6 T 13-10-2018 RAM_47175 1deb8f5e9ecf0e011e251dd9f3f8aead 471 SUPERFAMILY SSF103473 12 468 1.44E-52 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_47175 1deb8f5e9ecf0e011e251dd9f3f8aead 471 Gene3D G3DSA:1.20.1720.10 24 220 1.2E-41 T 13-10-2018 RAM_32145 0b798721715e189ceeaf362b0762e049 317 SUPERFAMILY SSF52540 9 284 1.79E-42 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_32145 0b798721715e189ceeaf362b0762e049 317 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 40 169 3.0E-63 T 13-10-2018 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 RAM_32145 0b798721715e189ceeaf362b0762e049 317 Gene3D G3DSA:1.10.8.300 203 309 3.5E-31 T 13-10-2018 RAM_32145 0b798721715e189ceeaf362b0762e049 317 Gene3D G3DSA:3.40.50.300 3 202 5.4E-45 T 13-10-2018 RAM_32145 0b798721715e189ceeaf362b0762e049 317 PIRSF PIRSF002849 2 314 1.1E-130 T 13-10-2018 RAM_31475 8878b2f4d2b49c8beef6f6f08af03724 256 SUPERFAMILY SSF53474 94 255 9.39E-22 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_31475 8878b2f4d2b49c8beef6f6f08af03724 256 Gene3D G3DSA:3.40.50.1820 59 255 2.2E-19 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_31475 8878b2f4d2b49c8beef6f6f08af03724 256 Pfam PF00326 Prolyl oligopeptidase family 104 220 2.3E-6 T 13-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 RAM_29955 63682e18d5bec5f499aa27259a21bea3 399 Gene3D G3DSA:1.20.1250.20 211 387 6.7E-15 T 13-10-2018 RAM_29955 63682e18d5bec5f499aa27259a21bea3 399 Gene3D G3DSA:1.20.1250.20 11 190 1.1E-16 T 13-10-2018 RAM_29955 63682e18d5bec5f499aa27259a21bea3 399 SUPERFAMILY SSF103473 5 393 6.93E-43 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_29955 63682e18d5bec5f499aa27259a21bea3 399 Pfam PF07690 Major Facilitator Superfamily 15 274 1.6E-13 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_20615 3bd2c8831c68dfcae16b2df2a8ed57da 79 Pfam PF00550 Phosphopantetheine attachment site 6 60 3.1E-12 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_20615 3bd2c8831c68dfcae16b2df2a8ed57da 79 SUPERFAMILY SSF47336 3 76 4.71E-15 T 13-10-2018 IPR036736 ACP-like superfamily RAM_20615 3bd2c8831c68dfcae16b2df2a8ed57da 79 Gene3D G3DSA:1.10.1200.10 2 76 1.2E-15 T 13-10-2018 IPR036736 ACP-like superfamily RAM_21920 7877747a6f168a6ba9903105c820fc24 298 SUPERFAMILY SSF51197 6 285 1.97E-81 T 13-10-2018 RAM_21920 7877747a6f168a6ba9903105c820fc24 298 Gene3D G3DSA:3.60.130.10 3 298 1.5E-94 T 13-10-2018 RAM_21920 7877747a6f168a6ba9903105c820fc24 298 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 8 270 6.6E-59 T 13-10-2018 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 RAM_04835 4d0dcd984cf330773014b32c6e814b55 368 Pfam PF07730 Histidine kinase 168 232 3.4E-18 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_04835 4d0dcd984cf330773014b32c6e814b55 368 SUPERFAMILY SSF55874 258 362 1.09E-13 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_04835 4d0dcd984cf330773014b32c6e814b55 368 Gene3D G3DSA:3.30.565.10 243 361 3.4E-28 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_22405 2530dbb6d4d62b0405d1acb5f4ad8a63 348 Pfam PF02653 Branched-chain amino acid transport system / permease component 44 312 1.8E-40 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 RAM_43480 b0caddde1b56b6eab07e291a51e5351a 116 Pfam PF04237 YjbR 12 105 9.6E-16 T 13-10-2018 IPR007351 Uncharacterised protein YjbR RAM_43480 b0caddde1b56b6eab07e291a51e5351a 116 Gene3D G3DSA:3.90.1150.30 1 115 2.2E-11 T 13-10-2018 IPR038056 YjbR-like superfamily RAM_43480 b0caddde1b56b6eab07e291a51e5351a 116 SUPERFAMILY SSF142906 2 112 2.75E-19 T 13-10-2018 IPR038056 YjbR-like superfamily RAM_02035 4793184d0b7a4c26b7c2de54a3e4fd6d 283 Pfam PF04672 S-adenosyl methyltransferase 7 271 2.8E-76 T 13-10-2018 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type RAM_02035 4793184d0b7a4c26b7c2de54a3e4fd6d 283 Gene3D G3DSA:3.40.50.150 2 271 4.1E-94 T 13-10-2018 RAM_02035 4793184d0b7a4c26b7c2de54a3e4fd6d 283 SUPERFAMILY SSF53335 7 254 1.58E-42 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_02035 4793184d0b7a4c26b7c2de54a3e4fd6d 283 PIRSF PIRSF017393 2 271 8.4E-81 T 13-10-2018 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type RAM_19650 d092422f5b0ee27e262c41b3d35d6aab 460 Pfam PF00232 Glycosyl hydrolase family 1 50 422 1.9E-40 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RAM_19650 d092422f5b0ee27e262c41b3d35d6aab 460 Gene3D G3DSA:3.20.20.80 44 425 3.6E-53 T 13-10-2018 RAM_19650 d092422f5b0ee27e262c41b3d35d6aab 460 SUPERFAMILY SSF51445 50 418 5.03E-57 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_07730 2ea56f6ffabe7b0e519f9cab7d61afe0 340 Gene3D G3DSA:3.40.50.2300 42 324 1.8E-94 T 13-10-2018 RAM_07730 2ea56f6ffabe7b0e519f9cab7d61afe0 340 Pfam PF13407 Periplasmic binding protein domain 42 298 4.5E-44 T 13-10-2018 IPR025997 Periplasmic binding protein RAM_07730 2ea56f6ffabe7b0e519f9cab7d61afe0 340 SUPERFAMILY SSF53822 41 339 1.5E-53 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_07730 2ea56f6ffabe7b0e519f9cab7d61afe0 340 Gene3D G3DSA:3.40.50.2300 142 340 1.8E-94 T 13-10-2018 RAM_00805 548d66ceca5515780e5eb504808ba47c 214 Pfam PF09339 IclR helix-turn-helix domain 9 61 4.7E-11 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RAM_00805 548d66ceca5515780e5eb504808ba47c 214 SUPERFAMILY SSF55781 65 209 1.63E-18 T 13-10-2018 RAM_00805 548d66ceca5515780e5eb504808ba47c 214 Gene3D G3DSA:1.10.10.10 2 76 1.8E-14 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_00805 548d66ceca5515780e5eb504808ba47c 214 SMART SM00346 7 94 1.4E-12 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RAM_00805 548d66ceca5515780e5eb504808ba47c 214 SUPERFAMILY SSF46785 9 78 1.3E-10 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_00805 548d66ceca5515780e5eb504808ba47c 214 Gene3D G3DSA:3.30.450.40 79 148 5.1E-13 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_07595 52f82c886a2452176573d7bbd3489440 189 SUPERFAMILY SSF53955 92 160 1.71E-6 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily RAM_07595 52f82c886a2452176573d7bbd3489440 189 Pfam PF01464 Transglycosylase SLT domain 92 154 6.8E-5 T 13-10-2018 IPR008258 Transglycosylase SLT domain 1 RAM_07595 52f82c886a2452176573d7bbd3489440 189 Gene3D G3DSA:1.10.530.10 87 170 2.0E-9 T 13-10-2018 RAM_10705 ae89c688cf5776449da52cc35c977b82 397 Pfam PF12698 ABC-2 family transporter protein 22 374 9.8E-46 T 13-10-2018 RAM_45675 b16fc5842789875b15a24f8d79f87b66 123 Pfam PF10066 Uncharacterized conserved protein (DUF2304) 5 86 9.2E-18 T 13-10-2018 IPR019277 Protein of unknown function DUF2304 RAM_22070 048d2634fdcf76694ad6176c6cdb2f53 226 Gene3D G3DSA:3.40.630.30 7 196 1.1E-24 T 13-10-2018 RAM_22070 048d2634fdcf76694ad6176c6cdb2f53 226 SUPERFAMILY SSF55729 20 157 4.69E-19 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_22070 048d2634fdcf76694ad6176c6cdb2f53 226 Pfam PF00583 Acetyltransferase (GNAT) family 56 142 5.2E-5 T 13-10-2018 IPR000182 GNAT domain RAM_01640 59bda1d8204dc281f8aa3ad0311e85ce 273 Pfam PF01345 Domain of unknown function DUF11 152 228 1.3E-6 T 13-10-2018 IPR001434 Domain of unknown function DUF11 RAM_01640 59bda1d8204dc281f8aa3ad0311e85ce 273 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 166 187 1.8E-4 T 13-10-2018 IPR001434 Domain of unknown function DUF11 RAM_27630 93765d50c2cda95c2220a99c991d4537 435 PIRSF PIRSF000390 31 435 1.1E-94 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase RAM_27630 93765d50c2cda95c2220a99c991d4537 435 SUPERFAMILY SSF53383 47 432 5.41E-93 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_27630 93765d50c2cda95c2220a99c991d4537 435 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 46 428 8.5E-88 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase RAM_27630 93765d50c2cda95c2220a99c991d4537 435 Gene3D G3DSA:3.90.1150.10 306 434 2.1E-42 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_27630 93765d50c2cda95c2220a99c991d4537 435 Gene3D G3DSA:3.40.640.10 3 305 2.6E-87 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_16865 3118b670cb7d1ce7c34c63687e1458dc 307 SUPERFAMILY SSF161098 65 293 1.02E-53 T 13-10-2018 IPR035906 MetI-like superfamily RAM_16865 3118b670cb7d1ce7c34c63687e1458dc 307 Gene3D G3DSA:1.10.3720.10 60 303 6.1E-59 T 13-10-2018 IPR035906 MetI-like superfamily RAM_16865 3118b670cb7d1ce7c34c63687e1458dc 307 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 101 294 3.9E-12 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_25060 257ed59acf8a98ec5125a6aefb64c16f 277 Pfam PF00149 Calcineurin-like phosphoesterase 6 239 1.7E-12 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 RAM_25060 257ed59acf8a98ec5125a6aefb64c16f 277 SUPERFAMILY SSF56300 5 249 4.1E-23 T 13-10-2018 RAM_25520 e87843a55919992bb263b922175dbc19 437 Gene3D G3DSA:1.20.1250.20 6 206 7.7E-12 T 13-10-2018 RAM_25520 e87843a55919992bb263b922175dbc19 437 Gene3D G3DSA:1.20.1250.20 225 437 1.3E-14 T 13-10-2018 RAM_25520 e87843a55919992bb263b922175dbc19 437 Pfam PF13347 MFS/sugar transport protein 12 427 6.4E-73 T 13-10-2018 RAM_25520 e87843a55919992bb263b922175dbc19 437 SUPERFAMILY SSF103473 8 432 9.81E-35 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_29095 e0b44959c13dbf4e9c13e5bc51ace1d0 471 SUPERFAMILY SSF51905 4 378 5.41E-64 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_29095 e0b44959c13dbf4e9c13e5bc51ace1d0 471 Gene3D G3DSA:3.40.30.120 380 466 3.4E-13 T 13-10-2018 RAM_29095 e0b44959c13dbf4e9c13e5bc51ace1d0 471 Pfam PF01494 FAD binding domain 4 329 2.6E-75 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_29095 e0b44959c13dbf4e9c13e5bc51ace1d0 471 Gene3D G3DSA:3.30.70.2450 172 255 6.8E-101 T 13-10-2018 RAM_29095 e0b44959c13dbf4e9c13e5bc51ace1d0 471 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 316 332 1.7E-35 T 13-10-2018 RAM_29095 e0b44959c13dbf4e9c13e5bc51ace1d0 471 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 143 158 1.7E-35 T 13-10-2018 RAM_29095 e0b44959c13dbf4e9c13e5bc51ace1d0 471 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 266 281 1.7E-35 T 13-10-2018 RAM_29095 e0b44959c13dbf4e9c13e5bc51ace1d0 471 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 1.7E-35 T 13-10-2018 RAM_29095 e0b44959c13dbf4e9c13e5bc51ace1d0 471 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 281 297 1.7E-35 T 13-10-2018 RAM_29095 e0b44959c13dbf4e9c13e5bc51ace1d0 471 Gene3D G3DSA:3.50.50.60 6 330 6.8E-101 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_43355 17b18d431889148e747dfa7f62e7e712 233 Pfam PF01774 UreD urease accessory protein 35 191 4.3E-22 T 13-10-2018 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 RAM_43355 17b18d431889148e747dfa7f62e7e712 233 Hamap MF_01384 Urease accessory protein UreD [ureD]. 5 233 16.782 T 13-10-2018 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 RAM_22915 601a0644616768846216797f99ac6598 150 SUPERFAMILY SSF55804 1 147 4.97E-37 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 RAM_22915 601a0644616768846216797f99ac6598 150 TIGRFAM TIGR00848 fruA: PTS system, fructose subfamily, IIA component 7 132 8.4E-35 T 13-10-2018 IPR004715 Phosphotransferase system, IIA component fructose subfamily GO:0008982|GO:0009401|GO:0016021 RAM_22915 601a0644616768846216797f99ac6598 150 Gene3D G3DSA:3.40.930.10 2 148 3.8E-40 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 RAM_22915 601a0644616768846216797f99ac6598 150 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 6 147 2.7E-35 T 13-10-2018 IPR002178 PTS EIIA type-2 domain RAM_28730 3e53220c98bbac015cb4fdfdef7c8b96 223 Pfam PF04072 Leucine carboxyl methyltransferase 1 82 5.7E-28 T 13-10-2018 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp GO:0008168|GO:0032259 RAM_28730 3e53220c98bbac015cb4fdfdef7c8b96 223 TIGRFAM TIGR00027 mthyl_TIGR00027: methyltransferase, TIGR00027 family 1 82 1.3E-31 T 13-10-2018 IPR011610 S-adenosyl-L-methionine-dependent methyltransferase, putative GO:0008168 RAM_28730 3e53220c98bbac015cb4fdfdef7c8b96 223 SUPERFAMILY SSF53335 1 82 3.82E-27 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_28730 3e53220c98bbac015cb4fdfdef7c8b96 223 Gene3D G3DSA:3.40.50.150 1 83 6.6E-30 T 13-10-2018 RAM_14245 9bf2966638be52cea9e045434822542e 376 SUPERFAMILY SSF55874 258 373 2.55E-8 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_14245 9bf2966638be52cea9e045434822542e 376 Gene3D G3DSA:3.30.565.10 252 374 4.5E-26 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_14245 9bf2966638be52cea9e045434822542e 376 Pfam PF07730 Histidine kinase 182 244 1.5E-15 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_15495 7da2cc1753e560434ece164e465d1078 258 SMART SM00345 31 90 1.3E-11 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_15495 7da2cc1753e560434ece164e465d1078 258 SUPERFAMILY SSF46785 19 94 1.77E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_15495 7da2cc1753e560434ece164e465d1078 258 Gene3D G3DSA:1.10.10.10 14 90 2.8E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_15495 7da2cc1753e560434ece164e465d1078 258 SMART SM00866 110 248 1.4E-32 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RAM_15495 7da2cc1753e560434ece164e465d1078 258 Gene3D G3DSA:3.40.1410.10 91 255 2.8E-41 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RAM_15495 7da2cc1753e560434ece164e465d1078 258 Pfam PF07702 UTRA domain 111 247 7.8E-37 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RAM_15495 7da2cc1753e560434ece164e465d1078 258 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 50 64 1.4E-5 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_15495 7da2cc1753e560434ece164e465d1078 258 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 64 80 1.4E-5 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_15495 7da2cc1753e560434ece164e465d1078 258 Pfam PF00392 Bacterial regulatory proteins, gntR family 28 90 8.4E-14 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_15495 7da2cc1753e560434ece164e465d1078 258 SUPERFAMILY SSF64288 78 253 3.93E-45 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RAM_46710 dd12c3ddc47b131078539d92314bd760 136 Pfam PF11349 Protein of unknown function (DUF3151) 7 131 2.9E-59 T 13-10-2018 IPR014487 Protein of unknown function DUF3151 RAM_46710 dd12c3ddc47b131078539d92314bd760 136 PIRSF PIRSF017349 1 135 1.2E-59 T 13-10-2018 IPR014487 Protein of unknown function DUF3151 RAM_43165 c1c791bd9e413792117bc747ecfb3f00 416 Gene3D G3DSA:3.40.190.10 36 414 7.2E-67 T 13-10-2018 RAM_43165 c1c791bd9e413792117bc747ecfb3f00 416 Pfam PF01547 Bacterial extracellular solute-binding protein 47 318 5.0E-37 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein RAM_43165 c1c791bd9e413792117bc747ecfb3f00 416 SUPERFAMILY SSF53850 6 412 5.69E-62 T 13-10-2018 RAM_35340 259d7fa54ba66a6fb5e82a8a9f7a04d1 482 SUPERFAMILY SSF55469 390 460 2.15E-5 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RAM_35340 259d7fa54ba66a6fb5e82a8a9f7a04d1 482 Gene3D G3DSA:3.40.109.10 225 473 1.1E-33 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RAM_35340 259d7fa54ba66a6fb5e82a8a9f7a04d1 482 TIGRFAM TIGR03605 antibiot_sagB: SagB-type dehydrogenase domain 300 474 2.5E-32 T 13-10-2018 IPR020051 SagB-type dehydrogenase domain RAM_07680 6317da7bd9bcd8314f2a449af5d56dc2 222 SUPERFAMILY SSF48008 94 216 9.42E-21 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_07680 6317da7bd9bcd8314f2a449af5d56dc2 222 SMART SM00895 98 213 1.0E-20 T 13-10-2018 IPR011711 GntR, C-terminal RAM_07680 6317da7bd9bcd8314f2a449af5d56dc2 222 SUPERFAMILY SSF46785 4 73 7.81E-15 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_07680 6317da7bd9bcd8314f2a449af5d56dc2 222 Pfam PF00392 Bacterial regulatory proteins, gntR family 9 67 1.2E-12 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_07680 6317da7bd9bcd8314f2a449af5d56dc2 222 SMART SM00345 11 69 2.6E-5 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_07680 6317da7bd9bcd8314f2a449af5d56dc2 222 Gene3D G3DSA:1.20.120.530 92 218 6.7E-22 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RAM_07680 6317da7bd9bcd8314f2a449af5d56dc2 222 Pfam PF07729 FCD domain 98 212 2.6E-16 T 13-10-2018 IPR011711 GntR, C-terminal RAM_07680 6317da7bd9bcd8314f2a449af5d56dc2 222 Gene3D G3DSA:1.10.10.10 4 69 1.4E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_34255 732eb8bd59349f7b42a72250593c347e 121 Gene3D G3DSA:3.30.428.10 2 116 4.4E-15 T 13-10-2018 IPR036265 HIT-like superfamily RAM_34255 732eb8bd59349f7b42a72250593c347e 121 Pfam PF01230 HIT domain 5 85 7.4E-5 T 13-10-2018 IPR001310 Histidine triad (HIT) protein RAM_34255 732eb8bd59349f7b42a72250593c347e 121 SUPERFAMILY SSF54197 4 101 6.97E-16 T 13-10-2018 IPR036265 HIT-like superfamily RAM_19405 ec5501c23f5b6e7203eb3dd0e5e277b2 307 Pfam PF13602 Zinc-binding dehydrogenase 191 304 3.4E-14 T 13-10-2018 RAM_19405 ec5501c23f5b6e7203eb3dd0e5e277b2 307 Gene3D G3DSA:3.40.50.720 129 255 6.5E-71 T 13-10-2018 RAM_19405 ec5501c23f5b6e7203eb3dd0e5e277b2 307 SUPERFAMILY SSF50129 4 150 7.0E-34 T 13-10-2018 IPR011032 GroES-like superfamily RAM_19405 ec5501c23f5b6e7203eb3dd0e5e277b2 307 SMART SM00829 11 304 3.6E-13 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_19405 ec5501c23f5b6e7203eb3dd0e5e277b2 307 Gene3D G3DSA:3.90.180.10 9 303 6.5E-71 T 13-10-2018 RAM_19405 ec5501c23f5b6e7203eb3dd0e5e277b2 307 SUPERFAMILY SSF51735 118 248 4.28E-23 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_19405 ec5501c23f5b6e7203eb3dd0e5e277b2 307 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 92 5.2E-8 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_17435 a03fba67cffb859c7b5231928f4b677a 328 Pfam PF06626 Protein of unknown function (DUF1152) 110 290 4.8E-13 T 13-10-2018 IPR010581 Protein of unknown function DUF1152 RAM_20725 1eeaf0f1dbba5579114d2c5754602a9a 328 SUPERFAMILY SSF53901 7 309 2.58E-23 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_20725 1eeaf0f1dbba5579114d2c5754602a9a 328 Gene3D G3DSA:3.40.47.10 171 319 6.4E-17 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_20725 1eeaf0f1dbba5579114d2c5754602a9a 328 Gene3D G3DSA:3.40.47.10 2 170 6.2E-21 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_23040 adae982a38b5c813618d7c02e25c702b 318 Gene3D G3DSA:1.20.58.340 132 260 2.9E-35 T 13-10-2018 RAM_23040 adae982a38b5c813618d7c02e25c702b 318 Gene3D G3DSA:3.30.460.20 2 130 1.7E-27 T 13-10-2018 RAM_23040 adae982a38b5c813618d7c02e25c702b 318 Gene3D G3DSA:1.20.58.340 262 318 2.5E-11 T 13-10-2018 RAM_23040 adae982a38b5c813618d7c02e25c702b 318 Pfam PF01544 CorA-like Mg2+ transporter protein 26 314 2.3E-62 T 13-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 RAM_23040 adae982a38b5c813618d7c02e25c702b 318 SUPERFAMILY SSF144083 254 315 3.66E-14 T 13-10-2018 RAM_23040 adae982a38b5c813618d7c02e25c702b 318 SUPERFAMILY SSF143865 4 253 1.14E-63 T 13-10-2018 RAM_08740 dc8dda376d2cc951ca6ba92a1809a7b0 235 SUPERFAMILY SSF56281 4 220 4.06E-32 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_08740 dc8dda376d2cc951ca6ba92a1809a7b0 235 SMART SM00849 18 197 3.7E-11 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_08740 dc8dda376d2cc951ca6ba92a1809a7b0 235 Gene3D G3DSA:3.60.15.10 1 211 2.3E-33 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_08740 dc8dda376d2cc951ca6ba92a1809a7b0 235 Pfam PF00753 Metallo-beta-lactamase superfamily 19 197 5.9E-17 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_02095 99e4054dd0fcc1c0bcd91965de5b1779 288 Pfam PF09995 Uncharacterized protein conserved in bacteria (DUF2236) 12 241 3.2E-51 T 13-10-2018 IPR018713 Domain of unknown function DUF2236 RAM_25785 ab57f7dd46f1ee880440ce82a04d817d 285 Pfam PF00722 Glycosyl hydrolases family 16 79 280 8.2E-22 T 13-10-2018 IPR000757 Glycoside hydrolase family 16 GO:0004553|GO:0005975 RAM_25785 ab57f7dd46f1ee880440ce82a04d817d 285 SUPERFAMILY SSF49899 23 282 1.97E-57 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily RAM_25785 ab57f7dd46f1ee880440ce82a04d817d 285 Gene3D G3DSA:2.60.120.200 25 284 4.7E-87 T 13-10-2018 RAM_06495 a7b864dac1dab2f4dce062ad64cc05f3 217 Gene3D G3DSA:1.10.357.10 39 213 1.7E-41 T 13-10-2018 RAM_06495 a7b864dac1dab2f4dce062ad64cc05f3 217 Pfam PF00440 Bacterial regulatory proteins, tetR family 44 88 2.0E-4 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_06495 a7b864dac1dab2f4dce062ad64cc05f3 217 SUPERFAMILY SSF46689 40 94 3.59E-7 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_06495 a7b864dac1dab2f4dce062ad64cc05f3 217 SUPERFAMILY SSF48498 116 204 9.3E-5 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_27310 993390c6e369b17fa4fef5726c019dcf 61 Gene3D G3DSA:1.20.144.10 14 59 2.8E-5 T 13-10-2018 RAM_27310 993390c6e369b17fa4fef5726c019dcf 61 SUPERFAMILY SSF48317 15 51 8.76E-9 T 13-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily RAM_20120 30c53db7060b22d7961a73ffdc9ede06 257 SUPERFAMILY SSF109854 6 149 6.93E-20 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_20120 30c53db7060b22d7961a73ffdc9ede06 257 Pfam PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain 12 146 1.5E-13 T 13-10-2018 IPR024344 Mycothiol-dependent maleylpyruvate isomerase, metal-binding domain GO:0046872 RAM_20120 30c53db7060b22d7961a73ffdc9ede06 257 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 12 230 2.4E-24 T 13-10-2018 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type RAM_20120 30c53db7060b22d7961a73ffdc9ede06 257 Gene3D G3DSA:1.20.120.450 3 150 6.8E-19 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_01255 3b961e22bc911e929bb43a314ae409de 144 Gene3D G3DSA:3.10.180.10 1 142 3.7E-24 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_01255 3b961e22bc911e929bb43a314ae409de 144 SUPERFAMILY SSF54593 4 127 3.09E-25 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_01255 3b961e22bc911e929bb43a314ae409de 144 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 120 1.7E-10 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RAM_37390 ce92b0e74e197b10784fe98bef5eeeef 210 Gene3D G3DSA:3.20.130.10 1 183 1.8E-48 T 13-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 RAM_37390 ce92b0e74e197b10784fe98bef5eeeef 210 Pfam PF05683 Fumarase C-terminus 5 183 6.0E-20 T 13-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 RAM_37390 ce92b0e74e197b10784fe98bef5eeeef 210 SUPERFAMILY SSF117457 6 181 8.11E-34 T 13-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 RAM_18275 3f22df9ef9ba987b06ce6860bcc95b0f 176 SUPERFAMILY SSF48452 3 150 1.29E-15 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_18275 3f22df9ef9ba987b06ce6860bcc95b0f 176 Pfam PF13424 Tetratricopeptide repeat 3 67 5.3E-9 T 13-10-2018 RAM_18275 3f22df9ef9ba987b06ce6860bcc95b0f 176 Gene3D G3DSA:1.25.40.10 1 162 1.2E-29 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_22945 e54deb7b7fcb7581afff6721bbb13db4 404 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 206 390 4.2E-25 T 13-10-2018 IPR013830 SGNH hydrolase-type esterase domain RAM_22945 e54deb7b7fcb7581afff6721bbb13db4 404 Gene3D G3DSA:3.40.50.1110 197 399 1.2E-29 T 13-10-2018 IPR036514 SGNH hydrolase superfamily RAM_22945 e54deb7b7fcb7581afff6721bbb13db4 404 SUPERFAMILY SSF52266 204 400 3.66E-44 T 13-10-2018 RAM_38030 07abddfa1485147292ef4ac5d83c3d02 488 Pfam PF13440 Polysaccharide biosynthesis protein 47 334 4.9E-40 T 13-10-2018 RAM_00670 d74acd074cbb65a895d277d80cd91120 269 Pfam PF01343 Peptidase family S49 81 224 8.8E-35 T 13-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 RAM_00670 d74acd074cbb65a895d277d80cd91120 269 Gene3D G3DSA:3.40.1750.20 120 186 2.1E-57 T 13-10-2018 RAM_00670 d74acd074cbb65a895d277d80cd91120 269 Gene3D G3DSA:3.90.226.10 14 221 2.1E-57 T 13-10-2018 RAM_00670 d74acd074cbb65a895d277d80cd91120 269 SUPERFAMILY SSF52096 4 218 1.3E-38 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_12705 de50603b05f1bb46a38352e5d730f458 231 Pfam PF13649 Methyltransferase domain 46 139 3.6E-20 T 13-10-2018 RAM_12705 de50603b05f1bb46a38352e5d730f458 231 SUPERFAMILY SSF53335 9 181 3.35E-35 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_12705 de50603b05f1bb46a38352e5d730f458 231 Gene3D G3DSA:3.40.50.150 6 203 1.6E-51 T 13-10-2018 RAM_17140 b41f145dbce88e563c6cb6eaece8a3d3 296 Gene3D G3DSA:3.40.50.1820 27 198 4.6E-40 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_17140 b41f145dbce88e563c6cb6eaece8a3d3 296 Pfam PF03583 Secretory lipase 126 194 2.9E-7 T 13-10-2018 IPR005152 Lipase, secreted GO:0004806|GO:0016042 RAM_45345 149714a43a497d7281cf6e02b986140b 104 Pfam PF01037 Lrp/AsnC ligand binding domain 28 96 7.6E-12 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RAM_45345 149714a43a497d7281cf6e02b986140b 104 Gene3D G3DSA:3.30.70.920 13 102 1.3E-14 T 13-10-2018 RAM_45345 149714a43a497d7281cf6e02b986140b 104 SUPERFAMILY SSF54909 20 101 1.74E-12 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_15525 5ab1b7d6761fce7b5ae1e7d257d2b54c 127 SUPERFAMILY SSF52091 5 114 3.14E-17 T 13-10-2018 IPR036513 STAS domain superfamily RAM_15525 5ab1b7d6761fce7b5ae1e7d257d2b54c 127 Gene3D G3DSA:3.30.750.24 2 117 2.6E-26 T 13-10-2018 IPR036513 STAS domain superfamily RAM_15525 5ab1b7d6761fce7b5ae1e7d257d2b54c 127 Pfam PF01740 STAS domain 20 97 7.1E-7 T 13-10-2018 IPR002645 STAS domain RAM_44350 8f453d21e2472ef11629e2d9c4b32c64 563 TIGRFAM TIGR00795 lctP: transporter, lactate permease (LctP) family 6 553 1.6E-136 T 13-10-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 RAM_44350 8f453d21e2472ef11629e2d9c4b32c64 563 Pfam PF02652 L-lactate permease 15 551 3.1E-137 T 13-10-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 RAM_09180 601cde323e26bfc15386283f31fa39c2 455 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 229 236 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 RAM_09180 601cde323e26bfc15386283f31fa39c2 455 Gene3D G3DSA:3.40.605.10 4 449 1.3E-165 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RAM_09180 601cde323e26bfc15386283f31fa39c2 455 Gene3D G3DSA:3.40.309.10 236 421 1.3E-165 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RAM_09180 601cde323e26bfc15386283f31fa39c2 455 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 257 268 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 RAM_09180 601cde323e26bfc15386283f31fa39c2 455 SUPERFAMILY SSF53720 4 450 3.93E-153 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RAM_09180 601cde323e26bfc15386283f31fa39c2 455 Pfam PF00171 Aldehyde dehydrogenase family 4 449 4.9E-158 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RAM_46325 ceda5bbdc9adf5d97ce4d3f0d1e98d2f 250 SUPERFAMILY SSF55729 69 244 3.66E-19 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_46325 ceda5bbdc9adf5d97ce4d3f0d1e98d2f 250 Pfam PF00583 Acetyltransferase (GNAT) family 125 235 6.7E-7 T 13-10-2018 IPR000182 GNAT domain RAM_46325 ceda5bbdc9adf5d97ce4d3f0d1e98d2f 250 Gene3D G3DSA:3.40.630.30 1 249 2.7E-55 T 13-10-2018 RAM_46450 088c1bffa18a6404aade091658c99f91 211 Gene3D G3DSA:3.60.15.10 1 182 2.6E-31 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_46450 088c1bffa18a6404aade091658c99f91 211 SMART SM00849 7 176 5.5E-7 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_46450 088c1bffa18a6404aade091658c99f91 211 SUPERFAMILY SSF56281 1 181 3.14E-24 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_46450 088c1bffa18a6404aade091658c99f91 211 Pfam PF13483 Beta-lactamase superfamily domain 3 176 4.5E-22 T 13-10-2018 RAM_12420 ad8fd74a3b1749e64d9463f752584934 310 SUPERFAMILY SSF161098 65 296 1.57E-56 T 13-10-2018 IPR035906 MetI-like superfamily RAM_12420 ad8fd74a3b1749e64d9463f752584934 310 Gene3D G3DSA:1.10.3720.10 61 310 3.1E-63 T 13-10-2018 IPR035906 MetI-like superfamily RAM_12420 ad8fd74a3b1749e64d9463f752584934 310 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 97 307 3.4E-14 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_38355 a2834adb87adab3220dd7dbe13091646 178 Gene3D G3DSA:1.20.1260.10 2 178 2.9E-47 T 13-10-2018 IPR012347 Ferritin-like RAM_38355 a2834adb87adab3220dd7dbe13091646 178 Pfam PF00210 Ferritin-like domain 9 144 1.8E-31 T 13-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 RAM_38355 a2834adb87adab3220dd7dbe13091646 178 SUPERFAMILY SSF47240 6 150 1.32E-41 T 13-10-2018 IPR009078 Ferritin-like superfamily RAM_44290 28ffba62b9612540b6c2d712db388104 77 Pfam PF05121 Gas vesicle protein K 7 66 1.8E-17 T 13-10-2018 IPR007805 Gas vesicle protein GvpK GO:0031412 RAM_12105 8814d1a483a6da1b19376aa2f784bb68 497 Gene3D G3DSA:3.80.30.20 149 383 7.0E-87 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe RAM_12105 8814d1a483a6da1b19376aa2f784bb68 497 Gene3D G3DSA:3.40.50.12160 9 139 1.1E-31 T 13-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily RAM_12105 8814d1a483a6da1b19376aa2f784bb68 497 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 10 446 1.5E-143 T 13-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 RAM_12105 8814d1a483a6da1b19376aa2f784bb68 497 Pfam PF04055 Radical SAM superfamily 155 326 4.6E-28 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RAM_12105 8814d1a483a6da1b19376aa2f784bb68 497 Pfam PF00919 Uncharacterized protein family UPF0004 11 108 6.3E-27 T 13-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 RAM_12105 8814d1a483a6da1b19376aa2f784bb68 497 SMART SM00729 151 369 1.0E-53 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 RAM_12105 8814d1a483a6da1b19376aa2f784bb68 497 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 155 175 - T 13-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 RAM_12105 8814d1a483a6da1b19376aa2f784bb68 497 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 10 419 8.2E-135 T 13-10-2018 RAM_12105 8814d1a483a6da1b19376aa2f784bb68 497 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 8 452 64.717 T 13-10-2018 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 RAM_12105 8814d1a483a6da1b19376aa2f784bb68 497 SUPERFAMILY SSF102114 137 377 2.35E-56 T 13-10-2018 RAM_10750 15559fbbd4d2dc94ae395cb7b6e67d99 154 SUPERFAMILY SSF52833 1 152 7.6E-49 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RAM_10750 15559fbbd4d2dc94ae395cb7b6e67d99 154 Pfam PF00578 AhpC/TSA family 5 130 1.7E-39 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 RAM_10750 15559fbbd4d2dc94ae395cb7b6e67d99 154 Gene3D G3DSA:3.40.30.10 1 153 2.7E-53 T 13-10-2018 RAM_10750 15559fbbd4d2dc94ae395cb7b6e67d99 154 PIRSF PIRSF000239 1 149 2.9E-26 T 13-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 RAM_09370 6a9b1f3979f2d8823d5bc8de114b1379 159 Pfam PF04138 GtrA-like protein 30 146 1.7E-10 T 13-10-2018 IPR007267 GtrA-like protein GO:0000271|GO:0016021 RAM_40165 d2abb0b0651f7493c01c9a54be896bdb 306 PIRSF PIRSF000535 6 299 1.6E-37 T 13-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 RAM_40165 d2abb0b0651f7493c01c9a54be896bdb 306 SUPERFAMILY SSF53613 14 279 1.53E-39 T 13-10-2018 IPR029056 Ribokinase-like RAM_40165 d2abb0b0651f7493c01c9a54be896bdb 306 Pfam PF00294 pfkB family carbohydrate kinase 16 282 1.2E-29 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB RAM_40165 d2abb0b0651f7493c01c9a54be896bdb 306 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 237 250 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RAM_40165 d2abb0b0651f7493c01c9a54be896bdb 306 Gene3D G3DSA:3.40.1190.20 3 306 3.7E-54 T 13-10-2018 IPR029056 Ribokinase-like RAM_12685 23f27d5b93254a2f9824144d1f0a01c9 216 Pfam PF05988 Bacterial protein of unknown function (DUF899) 5 216 3.0E-79 T 13-10-2018 IPR010296 Protein of unknown function DUF899, thioredoxin-like RAM_44080 fd2488d6f249ca9f17795eab3bed549b 242 Pfam PF00691 OmpA family 145 236 1.5E-13 T 13-10-2018 IPR006665 OmpA-like domain RAM_44080 fd2488d6f249ca9f17795eab3bed549b 242 Gene3D G3DSA:3.30.1330.60 114 241 4.5E-18 T 13-10-2018 IPR036737 OmpA-like domain superfamily RAM_44080 fd2488d6f249ca9f17795eab3bed549b 242 SUPERFAMILY SSF103088 139 241 4.05E-16 T 13-10-2018 IPR036737 OmpA-like domain superfamily RAM_39290 113784e3085c55af47fb327eface3740 341 Gene3D G3DSA:3.20.20.30 1 339 5.9E-80 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_39290 113784e3085c55af47fb327eface3740 341 SUPERFAMILY SSF51679 9 335 3.53E-67 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_39290 113784e3085c55af47fb327eface3740 341 Pfam PF00296 Luciferase-like monooxygenase 12 316 3.2E-79 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_10770 e69beddb034bc663601846e8c79a0327 345 ProSitePatterns PS00093 N-4 cytosine-specific DNA methylases signature. 33 38 - T 13-10-2018 IPR017985 DNA methylase, N-4 cytosine-specific, conserved site GO:0003677|GO:0015667|GO:0090124 RAM_10770 e69beddb034bc663601846e8c79a0327 345 Pfam PF01555 DNA methylase 29 331 3.6E-40 T 13-10-2018 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 RAM_10770 e69beddb034bc663601846e8c79a0327 345 SUPERFAMILY SSF53335 12 337 6.22E-47 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_10770 e69beddb034bc663601846e8c79a0327 345 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 66 86 3.4E-28 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 RAM_10770 e69beddb034bc663601846e8c79a0327 345 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 292 310 3.4E-28 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 RAM_10770 e69beddb034bc663601846e8c79a0327 345 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 236 253 3.4E-28 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 RAM_10770 e69beddb034bc663601846e8c79a0327 345 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 28 42 3.4E-28 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 RAM_10770 e69beddb034bc663601846e8c79a0327 345 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 315 335 3.4E-28 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 RAM_33675 a63a7021ee86a42b95a131625c486a41 486 Pfam PF00171 Aldehyde dehydrogenase family 25 475 7.6E-152 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RAM_33675 a63a7021ee86a42b95a131625c486a41 486 Gene3D G3DSA:3.40.309.10 257 443 1.1E-151 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RAM_33675 a63a7021ee86a42b95a131625c486a41 486 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 281 292 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 RAM_33675 a63a7021ee86a42b95a131625c486a41 486 Gene3D G3DSA:3.40.605.10 27 457 1.1E-151 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RAM_33675 a63a7021ee86a42b95a131625c486a41 486 SUPERFAMILY SSF53720 14 478 3.53E-146 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RAM_08950 715282ea6f388d0489a80cd03a27967d 124 SUPERFAMILY SSF46785 6 94 2.06E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_08950 715282ea6f388d0489a80cd03a27967d 124 SMART SM00345 17 76 4.1E-10 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_08950 715282ea6f388d0489a80cd03a27967d 124 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 76 2.8E-11 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_08950 715282ea6f388d0489a80cd03a27967d 124 Gene3D G3DSA:1.10.10.10 11 123 3.6E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_21875 869ac713ed9fac9fa7939fda6c9c8e04 239 Gene3D G3DSA:3.40.50.150 27 206 4.7E-35 T 13-10-2018 RAM_21875 869ac713ed9fac9fa7939fda6c9c8e04 239 SUPERFAMILY SSF53335 32 204 4.93E-33 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_21875 869ac713ed9fac9fa7939fda6c9c8e04 239 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 125 131 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RAM_21875 869ac713ed9fac9fa7939fda6c9c8e04 239 Pfam PF05175 Methyltransferase small domain 32 178 6.2E-13 T 13-10-2018 IPR007848 Methyltransferase small domain GO:0008168 RAM_16420 606ab6cca41b9567df24865461269405 154 Pfam PF00891 O-methyltransferase 2 129 2.3E-24 T 13-10-2018 IPR001077 O-methyltransferase, family 2 GO:0008171 RAM_16420 606ab6cca41b9567df24865461269405 154 SUPERFAMILY SSF53335 2 140 4.8E-24 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_16420 606ab6cca41b9567df24865461269405 154 Gene3D G3DSA:3.40.50.150 1 145 1.3E-35 T 13-10-2018 RAM_16175 9d9f86d06ee4f709ee403a3c2a742cec 258 Gene3D G3DSA:3.20.20.60 2 227 3.4E-66 T 13-10-2018 RAM_16175 9d9f86d06ee4f709ee403a3c2a742cec 258 SUPERFAMILY SSF51621 4 246 6.73E-55 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 RAM_16175 9d9f86d06ee4f709ee403a3c2a742cec 258 Pfam PF13714 Phosphoenolpyruvate phosphomutase 9 244 8.2E-70 T 13-10-2018 RAM_12655 fcc8339522fe7ec18913acdb549b8a4f 530 Gene3D G3DSA:1.20.1730.10 20 526 1.3E-54 T 13-10-2018 IPR038377 Sodium/glucose symporter superfamily RAM_12655 fcc8339522fe7ec18913acdb549b8a4f 530 Pfam PF00474 Sodium:solute symporter family 45 454 6.6E-89 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 RAM_06560 99af7e8c046f49b899cfa6a51ef2fc3e 256 SUPERFAMILY SSF51182 20 175 8.54E-11 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RAM_06560 99af7e8c046f49b899cfa6a51ef2fc3e 256 Gene3D G3DSA:1.10.10.60 149 253 9.9E-22 T 13-10-2018 RAM_06560 99af7e8c046f49b899cfa6a51ef2fc3e 256 SUPERFAMILY SSF46689 203 251 6.27E-9 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_06560 99af7e8c046f49b899cfa6a51ef2fc3e 256 Pfam PF12833 Helix-turn-helix domain 175 249 4.8E-22 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_06560 99af7e8c046f49b899cfa6a51ef2fc3e 256 SMART SM00342 167 249 9.2E-23 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_22225 f608783543f7c5f21d9437103bd13688 276 Gene3D G3DSA:1.10.3720.10 2 267 2.4E-65 T 13-10-2018 IPR035906 MetI-like superfamily RAM_22225 f608783543f7c5f21d9437103bd13688 276 SUPERFAMILY SSF161098 2 276 1.87E-74 T 13-10-2018 IPR035906 MetI-like superfamily RAM_22225 f608783543f7c5f21d9437103bd13688 276 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 85 261 2.4E-19 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_38005 b7592a130b10aa9a1e0c9f0edd095786 321 SUPERFAMILY SSF88713 36 212 2.31E-26 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RAM_38005 b7592a130b10aa9a1e0c9f0edd095786 321 Pfam PF01522 Polysaccharide deacetylase 36 145 1.1E-18 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 RAM_25240 88a32a382b03730875866f7bd6287137 192 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 61 1.9E-17 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_25240 88a32a382b03730875866f7bd6287137 192 SUPERFAMILY SSF46689 5 85 3.84E-21 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_25240 88a32a382b03730875866f7bd6287137 192 ProSitePatterns PS01081 TetR-type HTH domain signature. 27 57 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RAM_25240 88a32a382b03730875866f7bd6287137 192 Gene3D G3DSA:1.10.357.10 2 191 1.1E-40 T 13-10-2018 RAM_25240 88a32a382b03730875866f7bd6287137 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 2.3E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_25240 88a32a382b03730875866f7bd6287137 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 2.3E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_10865 dab3f81b0ac1b4be817f514d84393e14 164 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 11 46 - T 13-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 RAM_10865 dab3f81b0ac1b4be817f514d84393e14 164 Gene3D G3DSA:3.40.140.10 1 97 8.6E-25 T 13-10-2018 RAM_10865 dab3f81b0ac1b4be817f514d84393e14 164 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 9 57 1.0E-11 T 13-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain RAM_10865 dab3f81b0ac1b4be817f514d84393e14 164 SUPERFAMILY SSF53927 8 65 3.01E-19 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 RAM_13450 a187a81d6d1354f33224a11fd0e53b51 445 SUPERFAMILY SSF89796 197 428 1.12E-54 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily RAM_13450 a187a81d6d1354f33224a11fd0e53b51 445 Pfam PF02515 CoA-transferase family III 199 381 1.1E-42 T 13-10-2018 IPR003673 CoA-transferase family III GO:0003824 RAM_13450 a187a81d6d1354f33224a11fd0e53b51 445 Gene3D G3DSA:3.30.1540.10 89 159 2.2E-6 T 13-10-2018 RAM_13450 a187a81d6d1354f33224a11fd0e53b51 445 Gene3D G3DSA:3.40.50.10540 194 420 4.8E-53 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily RAM_13450 a187a81d6d1354f33224a11fd0e53b51 445 SUPERFAMILY SSF89796 10 190 1.96E-26 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily RAM_13450 a187a81d6d1354f33224a11fd0e53b51 445 Gene3D G3DSA:3.40.50.10540 22 172 2.2E-6 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily RAM_40280 7d11ce4325085fb0adeee7d1ebbda7ef 375 SUPERFAMILY SSF51126 9 348 1.0E-46 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor RAM_40280 7d11ce4325085fb0adeee7d1ebbda7ef 375 Gene3D G3DSA:2.160.20.10 10 370 6.9E-89 T 13-10-2018 IPR012334 Pectin lyase fold RAM_09255 3516fea85658a0e2f5e895451268ab71 130 Gene3D G3DSA:3.40.710.10 1 129 2.7E-29 T 13-10-2018 RAM_09255 3516fea85658a0e2f5e895451268ab71 130 SUPERFAMILY SSF56601 2 123 7.7E-19 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_37170 e46ca837885c7ec8744493682bb1d913 414 Gene3D G3DSA:3.40.50.12780 312 414 1.5E-13 T 13-10-2018 RAM_37170 e46ca837885c7ec8744493682bb1d913 414 Gene3D G3DSA:3.40.50.12780 9 304 2.0E-55 T 13-10-2018 RAM_37170 e46ca837885c7ec8744493682bb1d913 414 SUPERFAMILY SSF56801 12 413 8.5E-78 T 13-10-2018 RAM_37170 e46ca837885c7ec8744493682bb1d913 414 ProSitePatterns PS00455 Putative AMP-binding domain signature. 179 190 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_37170 e46ca837885c7ec8744493682bb1d913 414 Pfam PF00501 AMP-binding enzyme 19 413 3.0E-62 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_17960 e33e4acf263b11d462d32014a0fbdd09 251 Gene3D G3DSA:1.20.1250.20 71 244 2.6E-7 T 13-10-2018 RAM_17960 e33e4acf263b11d462d32014a0fbdd09 251 SUPERFAMILY SSF103473 79 249 1.12E-6 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_17960 e33e4acf263b11d462d32014a0fbdd09 251 Pfam PF05977 Transmembrane secretion effector 83 237 1.7E-7 T 13-10-2018 IPR010290 Transmembrane secretion effector RAM_27640 ff6a1fd36785314c1e0d1908abfa3cfa 370 SUPERFAMILY SSF53756 1 369 3.45E-75 T 13-10-2018 RAM_27640 ff6a1fd36785314c1e0d1908abfa3cfa 370 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 272 341 1.7E-8 T 13-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 RAM_27640 ff6a1fd36785314c1e0d1908abfa3cfa 370 Gene3D G3DSA:3.40.50.2000 183 356 2.3E-108 T 13-10-2018 RAM_27640 ff6a1fd36785314c1e0d1908abfa3cfa 370 Gene3D G3DSA:3.40.50.2000 1 362 2.3E-108 T 13-10-2018 RAM_27640 ff6a1fd36785314c1e0d1908abfa3cfa 370 Pfam PF06722 Protein of unknown function (DUF1205) 164 257 3.6E-14 T 13-10-2018 IPR010610 Domain of unknown function DUF1205 RAM_17600 d681364b5a8fbb838a99f666d0107282 461 Pfam PF00144 Beta-lactamase 17 335 9.0E-65 T 13-10-2018 IPR001466 Beta-lactamase-related RAM_17600 d681364b5a8fbb838a99f666d0107282 461 Gene3D G3DSA:3.40.710.10 3 352 2.9E-80 T 13-10-2018 RAM_17600 d681364b5a8fbb838a99f666d0107282 461 SUPERFAMILY SSF56601 5 349 2.05E-79 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_09420 00bfe6106851799a4ce95ed06ccf21eb 384 Pfam PF16499 Alpha galactosidase A 15 80 6.8E-11 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_09420 00bfe6106851799a4ce95ed06ccf21eb 384 Pfam PF16499 Alpha galactosidase A 124 301 1.5E-11 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_09420 00bfe6106851799a4ce95ed06ccf21eb 384 Gene3D G3DSA:3.20.20.70 2 304 1.5E-77 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_09420 00bfe6106851799a4ce95ed06ccf21eb 384 SUPERFAMILY SSF51011 310 383 3.78E-8 T 13-10-2018 RAM_09420 00bfe6106851799a4ce95ed06ccf21eb 384 Gene3D G3DSA:2.60.40.1180 309 384 6.8E-13 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta RAM_09420 00bfe6106851799a4ce95ed06ccf21eb 384 SUPERFAMILY SSF51445 8 301 9.67E-41 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_09420 00bfe6106851799a4ce95ed06ccf21eb 384 PRINTS PR00740 Glycosyl hydrolase family 27 signature 157 175 2.3E-5 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_09420 00bfe6106851799a4ce95ed06ccf21eb 384 PRINTS PR00740 Glycosyl hydrolase family 27 signature 17 32 2.3E-5 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_09420 00bfe6106851799a4ce95ed06ccf21eb 384 PRINTS PR00740 Glycosyl hydrolase family 27 signature 258 279 2.3E-5 T 13-10-2018 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 RAM_38010 470abfc71eed9b18897802d8e2fe8157 411 Pfam PF04932 O-Antigen ligase 191 330 1.6E-14 T 13-10-2018 IPR007016 O-antigen ligase-related RAM_34865 787314dfbb07e9d7591716c6e51a5f28 311 SUPERFAMILY SSF51735 2 295 6.16E-42 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_34865 787314dfbb07e9d7591716c6e51a5f28 311 Gene3D G3DSA:3.40.50.720 2 305 1.2E-36 T 13-10-2018 RAM_34865 787314dfbb07e9d7591716c6e51a5f28 311 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 222 8.2E-16 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 RAM_22925 1ce13d606fef863815167258410cc297 253 Pfam PF08220 DeoR-like helix-turn-helix domain 6 60 4.7E-15 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RAM_22925 1ce13d606fef863815167258410cc297 253 SUPERFAMILY SSF100950 74 235 1.78E-31 T 13-10-2018 IPR037171 NagB/RpiA transferase-like RAM_22925 1ce13d606fef863815167258410cc297 253 SMART SM01134 73 234 1.2E-72 T 13-10-2018 RAM_22925 1ce13d606fef863815167258410cc297 253 Pfam PF00455 DeoR C terminal sensor domain 75 233 1.2E-52 T 13-10-2018 IPR014036 DeoR C-terminal sensor domain RAM_22925 1ce13d606fef863815167258410cc297 253 SUPERFAMILY SSF46785 5 61 7.08E-10 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_22925 1ce13d606fef863815167258410cc297 253 SMART SM00420 6 58 6.0E-15 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RAM_22925 1ce13d606fef863815167258410cc297 253 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 1.7E-7 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RAM_22925 1ce13d606fef863815167258410cc297 253 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 1.7E-7 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RAM_45785 7fa00c60148a470e60b4fccc6c0360d6 262 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_45785 7fa00c60148a470e60b4fccc6c0360d6 262 Gene3D G3DSA:3.40.50.300 1 259 3.8E-66 T 13-10-2018 RAM_45785 7fa00c60148a470e60b4fccc6c0360d6 262 Pfam PF00005 ABC transporter 22 161 1.2E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_45785 7fa00c60148a470e60b4fccc6c0360d6 262 SUPERFAMILY SSF52540 3 230 1.04E-67 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_45785 7fa00c60148a470e60b4fccc6c0360d6 262 SMART SM00382 31 210 1.2E-18 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_19575 49ee967f236cbacad4b95dab2b18a19f 456 SUPERFAMILY SSF103378 7 442 3.01E-105 T 13-10-2018 IPR036148 MmgE/PrpD superfamily GO:0016829 RAM_19575 49ee967f236cbacad4b95dab2b18a19f 456 Pfam PF03972 MmgE/PrpD family 8 438 4.8E-117 T 13-10-2018 IPR005656 MmgE/PrpD GO:0016829 RAM_19575 49ee967f236cbacad4b95dab2b18a19f 456 Gene3D G3DSA:1.10.4100.10 28 415 9.5E-103 T 13-10-2018 RAM_19575 49ee967f236cbacad4b95dab2b18a19f 456 Gene3D G3DSA:3.30.1330.120 271 399 9.5E-103 T 13-10-2018 RAM_29380 9357250a11a5e027708cc30a15955eb5 148 Pfam PF00571 CBS domain 97 143 1.9E-4 T 13-10-2018 IPR000644 CBS domain RAM_29380 9357250a11a5e027708cc30a15955eb5 148 Gene3D G3DSA:3.10.580.10 1 148 8.9E-61 T 13-10-2018 RAM_29380 9357250a11a5e027708cc30a15955eb5 148 SUPERFAMILY SSF54631 6 143 1.08E-12 T 13-10-2018 RAM_03075 e1ca97b3908e2d718963d76281ffe9d2 390 Gene3D G3DSA:3.40.50.300 5 277 8.8E-56 T 13-10-2018 RAM_03075 e1ca97b3908e2d718963d76281ffe9d2 390 Pfam PF00005 ABC transporter 21 168 5.7E-25 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_03075 e1ca97b3908e2d718963d76281ffe9d2 390 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_03075 e1ca97b3908e2d718963d76281ffe9d2 390 SUPERFAMILY SSF52540 7 231 7.21E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_03075 e1ca97b3908e2d718963d76281ffe9d2 390 SMART SM00382 29 225 4.5E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_26975 558b5e65fe4861ce96810c50a7300ae4 172 SUPERFAMILY SSF53271 10 167 1.42E-36 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like RAM_26975 558b5e65fe4861ce96810c50a7300ae4 172 Gene3D G3DSA:3.40.50.2020 1 172 4.8E-46 T 13-10-2018 RAM_26975 558b5e65fe4861ce96810c50a7300ae4 172 Hamap MF_00004 Adenine phosphoribosyltransferase [apt]. 6 172 30.204 T 13-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 RAM_19040 f87ec596cad5a084fa258b2ab7b6ae60 412 SUPERFAMILY SSF48208 11 398 4.23E-107 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_19040 f87ec596cad5a084fa258b2ab7b6ae60 412 Pfam PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) 35 388 1.2E-106 T 13-10-2018 RAM_19040 f87ec596cad5a084fa258b2ab7b6ae60 412 Gene3D G3DSA:1.50.10.10 10 410 3.6E-159 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 RAM_17550 d6dcfde6518c3ed585e29ed567bc7619 340 Gene3D G3DSA:3.40.50.720 158 288 2.4E-84 T 13-10-2018 RAM_17550 d6dcfde6518c3ed585e29ed567bc7619 340 TIGRFAM TIGR02822 adh_fam_2: zinc-binding alcohol dehydrogenase family protein 10 337 2.7E-175 T 13-10-2018 IPR014187 Alcohol dehydrogenase, zinc-binding type 2 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396 RAM_17550 d6dcfde6518c3ed585e29ed567bc7619 340 SUPERFAMILY SSF51735 149 307 8.4E-27 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_17550 d6dcfde6518c3ed585e29ed567bc7619 340 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 37 143 4.4E-32 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_17550 d6dcfde6518c3ed585e29ed567bc7619 340 SUPERFAMILY SSF50129 21 176 1.98E-48 T 13-10-2018 IPR011032 GroES-like superfamily RAM_17550 d6dcfde6518c3ed585e29ed567bc7619 340 Gene3D G3DSA:3.90.180.10 21 328 2.4E-84 T 13-10-2018 RAM_17550 d6dcfde6518c3ed585e29ed567bc7619 340 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 70 84 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 RAM_46850 3982eb7310737a9b87867b8238652cb9 211 Gene3D G3DSA:3.40.50.300 7 204 2.5E-51 T 13-10-2018 RAM_46850 3982eb7310737a9b87867b8238652cb9 211 SUPERFAMILY SSF52540 18 205 3.38E-33 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_13615 1645e3ff9395a83531cc6ef70e54c42c 339 Pfam PF03969 AFG1-like ATPase 41 231 4.2E-42 T 13-10-2018 IPR005654 ATPase, AFG1-like GO:0005524 RAM_13615 1645e3ff9395a83531cc6ef70e54c42c 339 Pfam PF03969 AFG1-like ATPase 233 332 2.5E-16 T 13-10-2018 IPR005654 ATPase, AFG1-like GO:0005524 RAM_13615 1645e3ff9395a83531cc6ef70e54c42c 339 SUPERFAMILY SSF52540 77 212 5.32E-10 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_13615 1645e3ff9395a83531cc6ef70e54c42c 339 Gene3D G3DSA:3.40.50.300 14 198 4.3E-15 T 13-10-2018 RAM_31495 18e6210836bfd758716ddf881a9703b8 257 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 229 251 1.4E-10 T 13-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RAM_31495 18e6210836bfd758716ddf881a9703b8 257 SMART SM00382 29 228 3.9E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_31495 18e6210836bfd758716ddf881a9703b8 257 Pfam PF00005 ABC transporter 20 180 6.3E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_31495 18e6210836bfd758716ddf881a9703b8 257 SUPERFAMILY SSF52540 3 251 9.32E-67 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_31495 18e6210836bfd758716ddf881a9703b8 257 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_31495 18e6210836bfd758716ddf881a9703b8 257 Gene3D G3DSA:3.40.50.300 1 253 1.2E-66 T 13-10-2018 RAM_23665 a07759b6337666fe972c65dae46f9d39 543 SUPERFAMILY SSF53474 99 453 7.89E-10 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_23665 a07759b6337666fe972c65dae46f9d39 543 Pfam PF07519 Tannase and feruloyl esterase 78 515 1.4E-106 T 13-10-2018 IPR011118 Tannase/feruloyl esterase MetaCyc: PWY-6784 RAM_08710 de840954c38593c67f6afeabf8b9ba98 386 Pfam PF00149 Calcineurin-like phosphoesterase 2 227 4.7E-12 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 RAM_08710 de840954c38593c67f6afeabf8b9ba98 386 TIGRFAM TIGR00619 sbcd: exonuclease SbcCD, D subunit 2 252 3.4E-51 T 13-10-2018 IPR004593 Nuclease SbcCD subunit D GO:0004519|GO:0006259|GO:0008408 RAM_08710 de840954c38593c67f6afeabf8b9ba98 386 Gene3D G3DSA:3.60.21.10 1 276 2.9E-65 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like RAM_08710 de840954c38593c67f6afeabf8b9ba98 386 SUPERFAMILY SSF56300 2 282 4.34E-47 T 13-10-2018 RAM_08710 de840954c38593c67f6afeabf8b9ba98 386 Pfam PF12320 Type 5 capsule protein repressor C-terminal domain 279 364 5.8E-7 T 13-10-2018 IPR026843 Nuclease SbcCD subunit D, C-terminal domain RAM_19530 edf2006206920cfdacd0407a2ae0043e 407 Pfam PF02720 Domain of unknown function (DUF222) 19 319 4.4E-43 T 13-10-2018 IPR003870 Domain of unknown function DUF222 RAM_19530 edf2006206920cfdacd0407a2ae0043e 407 SMART SM00507 310 363 2.0E-4 T 13-10-2018 IPR003615 HNH nuclease RAM_19530 edf2006206920cfdacd0407a2ae0043e 407 Pfam PF01844 HNH endonuclease 334 367 9.5E-7 T 13-10-2018 IPR002711 HNH endonuclease GO:0003676|GO:0004519 RAM_06125 9fd3308c2b63052659b30732fccb8448 308 Pfam PF02673 Bacitracin resistance protein BacA 9 300 2.8E-76 T 13-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 RAM_06125 9fd3308c2b63052659b30732fccb8448 308 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 4 306 15.329 T 13-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 RAM_41480 8de5709571ef67f858951821dfa84149 430 Gene3D G3DSA:3.40.50.1010 1 142 6.3E-18 T 13-10-2018 RAM_41480 8de5709571ef67f858951821dfa84149 430 SMART SM00670 1 127 2.2E-12 T 13-10-2018 IPR002716 PIN domain RAM_41480 8de5709571ef67f858951821dfa84149 430 SUPERFAMILY SSF88723 1 136 1.51E-9 T 13-10-2018 IPR029060 PIN-like domain superfamily RAM_41480 8de5709571ef67f858951821dfa84149 430 Pfam PF02562 PhoH-like protein 222 426 7.5E-53 T 13-10-2018 IPR003714 PhoH-like protein GO:0005524 RAM_41480 8de5709571ef67f858951821dfa84149 430 SUPERFAMILY SSF52540 220 382 1.41E-18 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_41480 8de5709571ef67f858951821dfa84149 430 Gene3D G3DSA:3.40.50.300 220 427 7.0E-53 T 13-10-2018 RAM_41480 8de5709571ef67f858951821dfa84149 430 Pfam PF13638 PIN domain 2 140 9.6E-29 T 13-10-2018 IPR002716 PIN domain RAM_46065 7646f9876c780157a170992a360a28b1 725 Gene3D G3DSA:3.40.50.300 650 715 6.9E-9 T 13-10-2018 RAM_46065 7646f9876c780157a170992a360a28b1 725 SUPERFAMILY SSF52540 160 700 6.71E-41 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_46065 7646f9876c780157a170992a360a28b1 725 Gene3D G3DSA:3.40.50.300 311 548 5.8E-6 T 13-10-2018 RAM_46065 7646f9876c780157a170992a360a28b1 725 Gene3D G3DSA:3.40.50.300 157 247 3.1E-9 T 13-10-2018 RAM_10660 7228e6423e581fe3985a43bacadabb1c 157 Pfam PF11343 Protein of unknown function (DUF3145) 1 155 1.6E-71 T 13-10-2018 IPR021491 Protein of unknown function DUF3145 RAM_36335 2dd479a5b519ae531ed6704e6add56c7 191 Pfam PF00929 Exonuclease 1 157 1.7E-23 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III RAM_36335 2dd479a5b519ae531ed6704e6add56c7 191 Gene3D G3DSA:3.30.420.10 1 170 5.0E-61 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RAM_36335 2dd479a5b519ae531ed6704e6add56c7 191 SMART SM00479 1 168 3.0E-18 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III RAM_36335 2dd479a5b519ae531ed6704e6add56c7 191 SUPERFAMILY SSF53098 1 166 7.08E-36 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily RAM_33130 cde6191c64c55afbf59966017bed5d32 148 Pfam PF12680 SnoaL-like domain 9 121 8.8E-16 T 13-10-2018 IPR037401 SnoaL-like domain RAM_33130 cde6191c64c55afbf59966017bed5d32 148 SUPERFAMILY SSF54427 4 138 2.0E-22 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_33130 cde6191c64c55afbf59966017bed5d32 148 Gene3D G3DSA:3.10.450.50 4 145 4.9E-24 T 13-10-2018 RAM_35790 5d1c0ef31c9259ab23db7d51f21c5ae3 352 Pfam PF01636 Phosphotransferase enzyme family 35 270 1.9E-46 T 13-10-2018 IPR002575 Aminoglycoside phosphotransferase RAM_35790 5d1c0ef31c9259ab23db7d51f21c5ae3 352 Gene3D G3DSA:3.30.200.20 12 114 7.3E-29 T 13-10-2018 RAM_35790 5d1c0ef31c9259ab23db7d51f21c5ae3 352 SUPERFAMILY SSF56112 14 341 1.75E-56 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_35790 5d1c0ef31c9259ab23db7d51f21c5ae3 352 Gene3D G3DSA:3.90.1200.10 120 347 3.0E-61 T 13-10-2018 RAM_42185 77ffc0314d4f85ccc1bef9263eb50a19 185 SUPERFAMILY SSF88659 122 184 1.37E-12 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_42185 77ffc0314d4f85ccc1bef9263eb50a19 185 Gene3D G3DSA:1.10.10.10 119 185 1.7E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_42185 77ffc0314d4f85ccc1bef9263eb50a19 185 Pfam PF04542 Sigma-70 region 2 29 98 4.3E-9 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_42185 77ffc0314d4f85ccc1bef9263eb50a19 185 SUPERFAMILY SSF88946 5 113 4.71E-23 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_42185 77ffc0314d4f85ccc1bef9263eb50a19 185 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 25 184 5.6E-19 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_42185 77ffc0314d4f85ccc1bef9263eb50a19 185 Gene3D G3DSA:1.10.1740.10 10 95 4.1E-25 T 13-10-2018 RAM_42185 77ffc0314d4f85ccc1bef9263eb50a19 185 Pfam PF08281 Sigma-70, region 4 129 180 3.2E-11 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_45600 7a1566ac3f5c0462f94a98679c368dfd 300 SUPERFAMILY SSF51735 4 259 6.89E-31 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_45600 7a1566ac3f5c0462f94a98679c368dfd 300 Pfam PF00106 short chain dehydrogenase 7 207 3.4E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_45600 7a1566ac3f5c0462f94a98679c368dfd 300 Gene3D G3DSA:3.40.50.720 3 268 4.0E-33 T 13-10-2018 RAM_25640 9c352c9ee29d21f6bab0dcb75716dc72 352 Gene3D G3DSA:1.10.3470.10 25 350 1.5E-84 T 13-10-2018 IPR037294 ABC transporter, BtuC-like RAM_25640 9c352c9ee29d21f6bab0dcb75716dc72 352 SUPERFAMILY SSF81345 23 344 7.45E-68 T 13-10-2018 IPR037294 ABC transporter, BtuC-like RAM_25640 9c352c9ee29d21f6bab0dcb75716dc72 352 Pfam PF01032 FecCD transport family 39 344 2.0E-79 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 RAM_35870 b492c859fb6c0193ee3c9183474dc4f8 167 SUPERFAMILY SSF56300 1 163 1.43E-33 T 13-10-2018 RAM_35870 b492c859fb6c0193ee3c9183474dc4f8 167 Gene3D G3DSA:3.60.21.10 1 161 1.2E-38 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like RAM_35870 b492c859fb6c0193ee3c9183474dc4f8 167 TIGRFAM TIGR00040 yfcE: phosphodiesterase, MJ0936 family 1 156 1.7E-27 T 13-10-2018 IPR000979 Phosphodiesterase MJ0936/Vps29 Reactome: R-HSA-3238698 RAM_35870 b492c859fb6c0193ee3c9183474dc4f8 167 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 1 148 4.3E-27 T 13-10-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 RAM_27990 c15b346c75d037d72c2e042b99328dae 389 SUPERFAMILY SSF55874 265 388 9.49E-16 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_27990 c15b346c75d037d72c2e042b99328dae 389 Gene3D G3DSA:3.30.565.10 258 389 7.1E-32 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_27990 c15b346c75d037d72c2e042b99328dae 389 Pfam PF07730 Histidine kinase 176 241 2.0E-16 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_22970 555398c99bade72af899acaafaa5aaef 274 SUPERFAMILY SSF161098 3 271 1.24E-63 T 13-10-2018 IPR035906 MetI-like superfamily RAM_22970 555398c99bade72af899acaafaa5aaef 274 Gene3D G3DSA:1.10.3720.10 2 265 4.0E-58 T 13-10-2018 IPR035906 MetI-like superfamily RAM_22970 555398c99bade72af899acaafaa5aaef 274 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 84 259 1.7E-17 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_08275 b592f3933f8471ee4097e1147d2523cf 397 Gene3D G3DSA:3.90.1720.10 253 389 4.2E-35 T 13-10-2018 RAM_08275 b592f3933f8471ee4097e1147d2523cf 397 SUPERFAMILY SSF54001 275 383 1.28E-29 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily RAM_08275 b592f3933f8471ee4097e1147d2523cf 397 Pfam PF00877 NlpC/P60 family 289 383 4.9E-21 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain RAM_08275 b592f3933f8471ee4097e1147d2523cf 397 SUPERFAMILY SSF53955 120 239 1.09E-8 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily RAM_03320 f71172b795b182accc86293fe2fe913f 272 SMART SM00828 Methyltransferase in polyketide synthase (PKS) enzymes. 47 250 0.0035 T 13-10-2018 IPR020803 Polyketide synthase, methyltransferase domain RAM_03320 f71172b795b182accc86293fe2fe913f 272 Gene3D G3DSA:3.40.50.150 1 271 2.4E-68 T 13-10-2018 RAM_03320 f71172b795b182accc86293fe2fe913f 272 Pfam PF08241 Methyltransferase domain 64 161 4.0E-24 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 RAM_03320 f71172b795b182accc86293fe2fe913f 272 SUPERFAMILY SSF53335 7 271 3.68E-59 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_04005 16380900a6096f2aaf6d94b01ffc5998 429 Pfam PF09922 Cell wall-active antibiotics response 4TMS YvqF 331 426 1.3E-8 T 13-10-2018 IPR024425 Cell wall-active antibiotics response 4TMS YvqF RAM_04005 16380900a6096f2aaf6d94b01ffc5998 429 Pfam PF04024 PspC domain 31 84 5.4E-11 T 13-10-2018 IPR007168 Phage shock protein, PspC, N-terminal RAM_20060 c4146a8d979c8ccaf130db18526f1d7c 187 Pfam PF07336 Putative stress-induced transcription regulator 13 135 7.2E-18 T 13-10-2018 IPR010852 Putative stress-induced transcription regulator RAM_20060 c4146a8d979c8ccaf130db18526f1d7c 187 Gene3D G3DSA:1.10.3300.10 10 184 7.2E-26 T 13-10-2018 IPR023286 ABATE domain superfamily RAM_20060 c4146a8d979c8ccaf130db18526f1d7c 187 SUPERFAMILY SSF160904 7 181 1.44E-40 T 13-10-2018 RAM_20060 c4146a8d979c8ccaf130db18526f1d7c 187 Pfam PF11706 CGNR zinc finger 141 181 4.8E-15 T 13-10-2018 IPR021005 Zinc finger, CGNR RAM_31225 cf7b494a340cb4a7fd9542db694dea64 153 Pfam PF00075 RNase H 3 140 2.8E-50 T 13-10-2018 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 RAM_31225 cf7b494a340cb4a7fd9542db694dea64 153 Hamap MF_00042 Ribonuclease H [rnhA]. 1 149 33.007 T 13-10-2018 IPR022892 Ribonuclease HI GO:0004523 RAM_31225 cf7b494a340cb4a7fd9542db694dea64 153 SUPERFAMILY SSF53098 3 141 2.4E-55 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily RAM_31225 cf7b494a340cb4a7fd9542db694dea64 153 Gene3D G3DSA:3.30.420.10 2 151 5.4E-58 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RAM_04310 539be8777ede08cba55b6d35e359843e 145 Pfam PF01638 HxlR-like helix-turn-helix 19 99 5.4E-18 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type RAM_04310 539be8777ede08cba55b6d35e359843e 145 SUPERFAMILY SSF46785 12 139 1.58E-33 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_04310 539be8777ede08cba55b6d35e359843e 145 Gene3D G3DSA:1.10.10.10 9 145 1.1E-40 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_35740 edf574f8771efb9daf0a657968047932 250 Pfam PF02633 Creatinine amidohydrolase 6 244 2.3E-48 T 13-10-2018 IPR003785 Creatininase/formamide hydrolase KEGG: 00740+3.5.1.102|MetaCyc: PWY-6167 RAM_35740 edf574f8771efb9daf0a657968047932 250 SUPERFAMILY SSF102215 3 247 3.4E-43 T 13-10-2018 IPR024087 Creatininase-like superfamily KEGG: 00740+3.5.1.102|MetaCyc: PWY-6167 RAM_35740 edf574f8771efb9daf0a657968047932 250 Gene3D G3DSA:3.40.50.10310 16 250 5.8E-51 T 13-10-2018 IPR024087 Creatininase-like superfamily KEGG: 00740+3.5.1.102|MetaCyc: PWY-6167 RAM_23765 bf73eef099a8ab327b8839267d325891 161 SUPERFAMILY SSF117892 34 144 1.83E-12 T 13-10-2018 IPR036013 Band 7/SPFH domain superfamily RAM_23765 bf73eef099a8ab327b8839267d325891 161 SMART SM00244 3 159 2.1E-10 T 13-10-2018 IPR001107 Band 7 domain RAM_23765 bf73eef099a8ab327b8839267d325891 161 Gene3D G3DSA:3.30.479.30 41 150 2.2E-15 T 13-10-2018 RAM_23765 bf73eef099a8ab327b8839267d325891 161 Pfam PF01145 SPFH domain / Band 7 family 7 144 8.5E-14 T 13-10-2018 IPR001107 Band 7 domain RAM_11635 cf483f4c9b2fb2e10b040dbf0bf2d69e 120 Pfam PF06993 Protein of unknown function (DUF1304) 10 117 3.6E-43 T 13-10-2018 IPR009732 Protein of unknown function DUF1304 RAM_35560 4fa8f0e0d66c6a7873e1add36629094d 244 SUPERFAMILY SSF51735 3 235 5.55E-60 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_35560 4fa8f0e0d66c6a7873e1add36629094d 244 Pfam PF00106 short chain dehydrogenase 3 190 1.5E-52 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_35560 4fa8f0e0d66c6a7873e1add36629094d 244 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 136 164 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_35560 4fa8f0e0d66c6a7873e1add36629094d 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 74 85 4.4E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_35560 4fa8f0e0d66c6a7873e1add36629094d 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 168 4.4E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_35560 4fa8f0e0d66c6a7873e1add36629094d 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 129 137 4.4E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_35560 4fa8f0e0d66c6a7873e1add36629094d 244 Gene3D G3DSA:3.40.50.720 3 244 2.1E-66 T 13-10-2018 RAM_35560 4fa8f0e0d66c6a7873e1add36629094d 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 3.9E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_35560 4fa8f0e0d66c6a7873e1add36629094d 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 74 85 3.9E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_35560 4fa8f0e0d66c6a7873e1add36629094d 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 123 139 3.9E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_35560 4fa8f0e0d66c6a7873e1add36629094d 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 149 168 3.9E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_40060 8e5b0ca4b64cc47254ffc7c31567634a 237 Pfam PF03713 Domain of unknown function (DUF305) 60 227 2.8E-45 T 13-10-2018 IPR005183 Domain of unknown function DUF305 RAM_40060 8e5b0ca4b64cc47254ffc7c31567634a 237 Gene3D G3DSA:1.20.1260.10 53 231 1.6E-58 T 13-10-2018 IPR012347 Ferritin-like RAM_30415 0f782725b2e65c9c36ff9400ac24796d 267 PIRSF PIRSF006648 3 266 2.2E-72 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 RAM_30415 0f782725b2e65c9c36ff9400ac24796d 267 Pfam PF01061 ABC-2 type transporter 13 221 2.9E-34 T 13-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 RAM_30385 be0f97008dd4a181ac120bd8ed55ecdc 236 Gene3D G3DSA:2.60.120.620 67 232 6.9E-12 T 13-10-2018 RAM_30385 be0f97008dd4a181ac120bd8ed55ecdc 236 Pfam PF10014 2OG-Fe dioxygenase 101 226 7.9E-11 T 13-10-2018 IPR018724 2OG-Fe dioxygenase RAM_09150 68870e00c164a2b6b7efbfa5fe5e39df 107 SUPERFAMILY SSF46785 3 105 4.46E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_09150 68870e00c164a2b6b7efbfa5fe5e39df 107 Pfam PF03551 Transcriptional regulator PadR-like family 15 87 1.1E-17 T 13-10-2018 IPR005149 Transcription regulator PadR, N-terminal RAM_09150 68870e00c164a2b6b7efbfa5fe5e39df 107 Gene3D G3DSA:1.10.10.10 2 107 1.2E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_15430 ab22039a9053ab6bce7a22fb2714246e 135 Gene3D G3DSA:3.10.180.10 9 135 1.8E-41 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_15430 ab22039a9053ab6bce7a22fb2714246e 135 SUPERFAMILY SSF54593 4 131 6.7E-34 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_15430 ab22039a9053ab6bce7a22fb2714246e 135 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 5 130 3.3E-12 T 13-10-2018 IPR028973 PhnB-like RAM_47185 306af51b30aa6e5b94df1541071b31df 235 SMART SM00369 180 203 0.11 T 13-10-2018 IPR003591 Leucine-rich repeat, typical subtype RAM_47185 306af51b30aa6e5b94df1541071b31df 235 SMART SM00369 111 133 44.0 T 13-10-2018 IPR003591 Leucine-rich repeat, typical subtype RAM_47185 306af51b30aa6e5b94df1541071b31df 235 SMART SM00369 134 156 39.0 T 13-10-2018 IPR003591 Leucine-rich repeat, typical subtype RAM_47185 306af51b30aa6e5b94df1541071b31df 235 SMART SM00369 41 63 0.11 T 13-10-2018 IPR003591 Leucine-rich repeat, typical subtype RAM_47185 306af51b30aa6e5b94df1541071b31df 235 SMART SM00369 64 87 0.0097 T 13-10-2018 IPR003591 Leucine-rich repeat, typical subtype RAM_47185 306af51b30aa6e5b94df1541071b31df 235 SMART SM00369 157 179 0.23 T 13-10-2018 IPR003591 Leucine-rich repeat, typical subtype RAM_47185 306af51b30aa6e5b94df1541071b31df 235 Pfam PF13855 Leucine rich repeat 160 215 1.0E-10 T 13-10-2018 IPR001611 Leucine-rich repeat GO:0005515 RAM_47185 306af51b30aa6e5b94df1541071b31df 235 Pfam PF13855 Leucine rich repeat 43 101 3.0E-9 T 13-10-2018 IPR001611 Leucine-rich repeat GO:0005515 RAM_47185 306af51b30aa6e5b94df1541071b31df 235 Gene3D G3DSA:3.80.10.10 92 221 3.8E-36 T 13-10-2018 IPR032675 Leucine-rich repeat domain superfamily RAM_47185 306af51b30aa6e5b94df1541071b31df 235 Gene3D G3DSA:3.80.10.10 1 91 3.4E-24 T 13-10-2018 IPR032675 Leucine-rich repeat domain superfamily RAM_47185 306af51b30aa6e5b94df1541071b31df 235 SUPERFAMILY SSF52058 2 220 2.38E-49 T 13-10-2018 RAM_47185 306af51b30aa6e5b94df1541071b31df 235 SMART SM00364 180 199 13.0 T 13-10-2018 RAM_47185 306af51b30aa6e5b94df1541071b31df 235 SMART SM00364 134 153 54.0 T 13-10-2018 RAM_47185 306af51b30aa6e5b94df1541071b31df 235 SMART SM00364 64 83 450.0 T 13-10-2018 RAM_47185 306af51b30aa6e5b94df1541071b31df 235 SMART SM00364 18 37 610.0 T 13-10-2018 RAM_47185 306af51b30aa6e5b94df1541071b31df 235 SMART SM00364 87 107 160.0 T 13-10-2018 RAM_47185 306af51b30aa6e5b94df1541071b31df 235 SMART SM00364 111 130 87.0 T 13-10-2018 RAM_47185 306af51b30aa6e5b94df1541071b31df 235 SMART SM00364 157 176 4.9 T 13-10-2018 RAM_19025 3637ce729b73d47463b61e74586e6937 172 Pfam PF00571 CBS domain 121 167 8.0E-4 T 13-10-2018 IPR000644 CBS domain RAM_19025 3637ce729b73d47463b61e74586e6937 172 Gene3D G3DSA:3.10.580.10 22 172 4.4E-60 T 13-10-2018 RAM_19025 3637ce729b73d47463b61e74586e6937 172 SUPERFAMILY SSF54631 30 167 2.82E-12 T 13-10-2018 RAM_10900 2abf42cf8bb605d6e75f00f3af657dc4 481 SUPERFAMILY SSF103473 4 470 3.53E-65 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_10900 2abf42cf8bb605d6e75f00f3af657dc4 481 Gene3D G3DSA:1.20.1250.20 261 475 1.8E-12 T 13-10-2018 RAM_10900 2abf42cf8bb605d6e75f00f3af657dc4 481 Gene3D G3DSA:1.20.1720.10 13 249 1.2E-36 T 13-10-2018 RAM_10900 2abf42cf8bb605d6e75f00f3af657dc4 481 Pfam PF07690 Major Facilitator Superfamily 20 404 3.5E-45 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_42245 5322840515c447a33a3eb7b1beca35f8 393 SUPERFAMILY SSF50952 26 382 3.53E-35 T 13-10-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 RAM_42245 5322840515c447a33a3eb7b1beca35f8 393 Pfam PF07995 Glucose / Sorbosone dehydrogenase 51 382 5.8E-75 T 13-10-2018 IPR012938 Glucose/Sorbosone dehydrogenase RAM_42245 5322840515c447a33a3eb7b1beca35f8 393 Gene3D G3DSA:2.120.10.30 31 393 1.9E-87 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RAM_11070 c70c914796b88a456da3a375bf1da909 324 Pfam PF16868 NMT1-like family 44 321 2.6E-70 T 13-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family RAM_11070 c70c914796b88a456da3a375bf1da909 324 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 3 321 3.9E-83 T 13-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family RAM_11070 c70c914796b88a456da3a375bf1da909 324 Gene3D G3DSA:3.40.190.10 44 321 1.6E-84 T 13-10-2018 RAM_11070 c70c914796b88a456da3a375bf1da909 324 SUPERFAMILY SSF53850 41 322 3.53E-61 T 13-10-2018 RAM_11070 c70c914796b88a456da3a375bf1da909 324 Gene3D G3DSA:3.40.190.10 126 264 1.6E-84 T 13-10-2018 RAM_19110 37d5f682041052a91415b9c5baa0968d 192 Pfam PF00440 Bacterial regulatory proteins, tetR family 21 62 1.4E-15 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_19110 37d5f682041052a91415b9c5baa0968d 192 Gene3D G3DSA:1.10.357.10 4 190 3.7E-42 T 13-10-2018 RAM_19110 37d5f682041052a91415b9c5baa0968d 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 40 63 5.6E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_19110 37d5f682041052a91415b9c5baa0968d 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 19 32 5.6E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_19110 37d5f682041052a91415b9c5baa0968d 192 SUPERFAMILY SSF46689 6 79 8.98E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_02240 fcd6fcaedc616d4c4073d8893baf9a9c 236 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 48 220 1.2E-16 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_02240 fcd6fcaedc616d4c4073d8893baf9a9c 236 SUPERFAMILY SSF161098 18 218 3.79E-28 T 13-10-2018 IPR035906 MetI-like superfamily RAM_02240 fcd6fcaedc616d4c4073d8893baf9a9c 236 Gene3D G3DSA:1.10.3720.10 26 222 1.1E-29 T 13-10-2018 IPR035906 MetI-like superfamily RAM_17785 8bfcf09c64b9c7d04b718d457302f0b8 83 SUPERFAMILY SSF47336 8 80 1.11E-15 T 13-10-2018 IPR036736 ACP-like superfamily RAM_17785 8bfcf09c64b9c7d04b718d457302f0b8 83 SMART SM00823 Phosphopantetheine attachment site 10 81 0.0012 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_17785 8bfcf09c64b9c7d04b718d457302f0b8 83 Gene3D G3DSA:1.10.1200.10 2 83 9.0E-16 T 13-10-2018 IPR036736 ACP-like superfamily RAM_17785 8bfcf09c64b9c7d04b718d457302f0b8 83 Pfam PF00550 Phosphopantetheine attachment site 11 77 2.7E-11 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_07570 ecd3357f276271c66653c152a1e5cb95 400 SUPERFAMILY SSF52540 31 187 2.47E-7 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_00055 b30410bf1617121e209586ffbf975509 71 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 11 57 8.1E-9 T 13-10-2018 IPR010093 SinI-like, DNA-binding domain GO:0003677 RAM_00055 b30410bf1617121e209586ffbf975509 71 Pfam PF12728 Helix-turn-helix domain 10 57 4.3E-10 T 13-10-2018 RAM_12040 a32d279f08cb0c5e168eb2d9502b2d41 61 Pfam PF01638 HxlR-like helix-turn-helix 1 55 1.1E-13 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type RAM_12040 a32d279f08cb0c5e168eb2d9502b2d41 61 SUPERFAMILY SSF46785 1 56 2.73E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_12040 a32d279f08cb0c5e168eb2d9502b2d41 61 Gene3D G3DSA:1.10.10.10 1 60 7.7E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_25375 e09745f3722426efeb7deb78555371ea 192 SMART SM00422 34 106 3.6E-19 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_25375 e09745f3722426efeb7deb78555371ea 192 Gene3D G3DSA:1.10.1660.10 34 105 2.7E-13 T 13-10-2018 RAM_25375 e09745f3722426efeb7deb78555371ea 192 Pfam PF13411 MerR HTH family regulatory protein 37 103 3.5E-14 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_25375 e09745f3722426efeb7deb78555371ea 192 SUPERFAMILY SSF46955 37 118 6.41E-14 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily RAM_23250 4a1095689e2f1ed2a9007b3bdac1d6fe 432 Gene3D G3DSA:1.20.1250.20 26 421 6.7E-26 T 13-10-2018 RAM_23250 4a1095689e2f1ed2a9007b3bdac1d6fe 432 Pfam PF07690 Major Facilitator Superfamily 253 419 1.7E-13 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_23250 4a1095689e2f1ed2a9007b3bdac1d6fe 432 SUPERFAMILY SSF103473 19 419 5.1E-39 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_32135 4de3a9b3a75dd4009421ea2502ac1a53 123 Pfam PF12079 Protein of unknown function (DUF3558) 1 120 7.5E-14 T 13-10-2018 IPR024520 Protein of unknown function DUF3558 RAM_04165 0b8523594f689cbf8ced6cbcbc7f2c66 1103 Pfam PF02811 PHP domain 63 236 3.6E-30 T 13-10-2018 IPR004013 PHP domain GO:0003824 RAM_04165 0b8523594f689cbf8ced6cbcbc7f2c66 1103 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 355 772 8.1E-144 T 13-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAM_04165 0b8523594f689cbf8ced6cbcbc7f2c66 1103 Pfam PF14579 Helix-hairpin-helix motif 845 938 4.1E-26 T 13-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAM_04165 0b8523594f689cbf8ced6cbcbc7f2c66 1103 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 62 941 2.7E-204 T 13-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAM_04165 0b8523594f689cbf8ced6cbcbc7f2c66 1103 SMART SM00481 62 129 8.8E-25 T 13-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal RAM_04165 0b8523594f689cbf8ced6cbcbc7f2c66 1103 SUPERFAMILY SSF89550 62 272 1.44E-22 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 RAM_04165 0b8523594f689cbf8ced6cbcbc7f2c66 1103 Gene3D G3DSA:3.20.20.140 40 332 8.1E-80 T 13-10-2018 RAM_04165 0b8523594f689cbf8ced6cbcbc7f2c66 1103 Hamap MF_01902 Error-prone DNA polymerase [dnaE2]. 61 1103 12.547 T 13-10-2018 IPR023073 DNA polymerase, error-prone GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAM_20785 cdcf855d5bde274cb6420b71c9e88782 503 Gene3D G3DSA:3.50.50.60 1 108 7.4E-24 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_20785 cdcf855d5bde274cb6420b71c9e88782 503 Gene3D G3DSA:3.50.50.60 203 310 7.4E-15 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_20785 cdcf855d5bde274cb6420b71c9e88782 503 TIGRFAM TIGR02734 crtI_fam: phytoene desaturase 4 492 2.5E-108 T 13-10-2018 IPR014105 Carotenoid/retinoid oxidoreductase GO:0016117|GO:0055114 RAM_20785 cdcf855d5bde274cb6420b71c9e88782 503 SUPERFAMILY SSF51905 4 489 3.24E-65 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_20785 cdcf855d5bde274cb6420b71c9e88782 503 Pfam PF01593 Flavin containing amine oxidoreductase 11 489 5.1E-22 T 13-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 RAM_09005 a3511bfea8100fc4078f9a0efc145be2 402 Pfam PF02470 MlaD protein 39 114 8.2E-13 T 13-10-2018 IPR003399 Mce/MlaD RAM_09005 a3511bfea8100fc4078f9a0efc145be2 402 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 9 297 1.6E-53 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_21260 d69e4c044464be5d43330331fa8ed1ec 466 Pfam PF07690 Major Facilitator Superfamily 17 347 3.8E-37 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_21260 d69e4c044464be5d43330331fa8ed1ec 466 PRINTS PR01036 Tetracycline resistance protein TetB signature 14 38 7.3E-7 T 13-10-2018 RAM_21260 d69e4c044464be5d43330331fa8ed1ec 466 PRINTS PR01036 Tetracycline resistance protein TetB signature 106 126 7.3E-7 T 13-10-2018 RAM_21260 d69e4c044464be5d43330331fa8ed1ec 466 PRINTS PR01036 Tetracycline resistance protein TetB signature 136 160 7.3E-7 T 13-10-2018 RAM_21260 d69e4c044464be5d43330331fa8ed1ec 466 PRINTS PR01036 Tetracycline resistance protein TetB signature 299 323 7.3E-7 T 13-10-2018 RAM_21260 d69e4c044464be5d43330331fa8ed1ec 466 Gene3D G3DSA:1.20.1720.10 11 219 4.2E-47 T 13-10-2018 RAM_21260 d69e4c044464be5d43330331fa8ed1ec 466 ProSitePatterns PS00216 Sugar transport proteins signature 1. 66 82 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RAM_21260 d69e4c044464be5d43330331fa8ed1ec 466 Gene3D G3DSA:1.20.1250.20 257 458 1.0E-13 T 13-10-2018 RAM_21260 d69e4c044464be5d43330331fa8ed1ec 466 SUPERFAMILY SSF103473 8 451 1.44E-61 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_09405 5d3ebb2569061133a4ad8d9204c29f48 420 Gene3D G3DSA:3.40.190.10 33 419 4.3E-70 T 13-10-2018 RAM_09405 5d3ebb2569061133a4ad8d9204c29f48 420 SUPERFAMILY SSF53850 20 415 1.38E-64 T 13-10-2018 RAM_09405 5d3ebb2569061133a4ad8d9204c29f48 420 Pfam PF13416 Bacterial extracellular solute-binding protein 58 359 1.4E-36 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein RAM_36455 e00b55206118e2d80a06c32e49499785 152 Gene3D G3DSA:1.10.260.40 4 142 1.4E-37 T 13-10-2018 RAM_09130 a66b2100c54554976da9528eaf3a65fd 144 Pfam PF13560 Helix-turn-helix domain 30 79 2.8E-6 T 13-10-2018 RAM_09130 a66b2100c54554976da9528eaf3a65fd 144 SUPERFAMILY SSF47413 46 86 2.12E-5 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_09130 a66b2100c54554976da9528eaf3a65fd 144 Gene3D G3DSA:1.10.260.40 5 135 4.0E-46 T 13-10-2018 RAM_21520 b326d64a180f9004232d7b07c25a2ca6 487 SUPERFAMILY SSF75304 3 485 5.23E-122 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RAM_21520 b326d64a180f9004232d7b07c25a2ca6 487 Pfam PF01425 Amidase 26 467 2.4E-85 T 13-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RAM_21520 b326d64a180f9004232d7b07c25a2ca6 487 Gene3D G3DSA:3.90.1300.10 3 487 3.4E-158 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RAM_21520 b326d64a180f9004232d7b07c25a2ca6 487 ProSitePatterns PS00571 Amidases signature. 141 172 - T 13-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 RAM_06430 3f5de630e10ebc8619f715bf55c50d3f 398 Pfam PF01546 Peptidase family M20/M25/M40 71 394 2.3E-24 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 RAM_06430 3f5de630e10ebc8619f715bf55c50d3f 398 SUPERFAMILY SSF55031 209 315 4.88E-17 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain RAM_06430 3f5de630e10ebc8619f715bf55c50d3f 398 Gene3D G3DSA:3.30.70.360 207 319 2.5E-107 T 13-10-2018 RAM_06430 3f5de630e10ebc8619f715bf55c50d3f 398 Gene3D G3DSA:3.40.630.10 18 390 2.5E-107 T 13-10-2018 RAM_06430 3f5de630e10ebc8619f715bf55c50d3f 398 SUPERFAMILY SSF53187 6 397 2.62E-65 T 13-10-2018 RAM_06430 3f5de630e10ebc8619f715bf55c50d3f 398 PIRSF PIRSF001235 5 398 2.7E-107 T 13-10-2018 IPR010158 Amidase, carbamoylase-type GO:0016813 RAM_06430 3f5de630e10ebc8619f715bf55c50d3f 398 TIGRFAM TIGR01879 hydantase: amidase, hydantoinase/carbamoylase family 8 393 7.1E-77 T 13-10-2018 IPR010158 Amidase, carbamoylase-type GO:0016813 RAM_41810 bae5111503dc8cb4a14c998db082a1d0 499 SUPERFAMILY SSF49384 32 133 6.28E-27 T 13-10-2018 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily GO:0030246 RAM_41810 bae5111503dc8cb4a14c998db082a1d0 499 SMART SM00637 33 132 3.2E-35 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_41810 bae5111503dc8cb4a14c998db082a1d0 499 Pfam PF00553 Cellulose binding domain 33 132 5.6E-26 T 13-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 RAM_41810 bae5111503dc8cb4a14c998db082a1d0 499 SUPERFAMILY SSF51445 164 496 3.64E-52 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_41810 bae5111503dc8cb4a14c998db082a1d0 499 Pfam PF00150 Cellulase (glycosyl hydrolase family 5) 198 465 3.5E-30 T 13-10-2018 IPR001547 Glycoside hydrolase, family 5 GO:0004553|GO:0005975 RAM_41810 bae5111503dc8cb4a14c998db082a1d0 499 ProSitePatterns PS00659 Glycosyl hydrolases family 5 signature. 314 323 - T 13-10-2018 IPR018087 Glycoside hydrolase, family 5, conserved site GO:0004553|GO:0005975 RAM_41810 bae5111503dc8cb4a14c998db082a1d0 499 Gene3D G3DSA:2.60.40.290 27 134 4.0E-31 T 13-10-2018 IPR012291 CBM2, carbohydrate-binding domain superfamily GO:0004553|GO:0030247 RAM_41810 bae5111503dc8cb4a14c998db082a1d0 499 Gene3D G3DSA:3.20.20.80 151 498 7.5E-63 T 13-10-2018 RAM_36920 f04f2d2df7eeac6ce5ce62272378d6a0 285 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 273 8.1E-38 T 13-10-2018 RAM_36920 f04f2d2df7eeac6ce5ce62272378d6a0 285 TIGRFAM TIGR03971 SDR_subfam_1: SDR family mycofactocin-dependent oxidoreductase 4 276 1.9E-102 T 13-10-2018 IPR023985 Mycofactocin-dependent oxidoreductase RAM_36920 f04f2d2df7eeac6ce5ce62272378d6a0 285 SUPERFAMILY SSF51735 2 277 7.58E-55 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_36920 f04f2d2df7eeac6ce5ce62272378d6a0 285 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 238 258 1.1E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36920 f04f2d2df7eeac6ce5ce62272378d6a0 285 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 188 1.1E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36920 f04f2d2df7eeac6ce5ce62272378d6a0 285 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.1E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36920 f04f2d2df7eeac6ce5ce62272378d6a0 285 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 190 207 1.1E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36920 f04f2d2df7eeac6ce5ce62272378d6a0 285 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 94 105 1.1E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_36920 f04f2d2df7eeac6ce5ce62272378d6a0 285 Gene3D G3DSA:3.40.50.720 1 277 5.2E-71 T 13-10-2018 RAM_15165 1b598066b8ee6e85637d9dda703eb9c4 106 Gene3D G3DSA:3.10.450.50 1 106 4.6E-27 T 13-10-2018 RAM_15165 1b598066b8ee6e85637d9dda703eb9c4 106 SUPERFAMILY SSF54427 1 105 1.13E-22 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_15165 1b598066b8ee6e85637d9dda703eb9c4 106 Pfam PF12680 SnoaL-like domain 16 97 5.6E-11 T 13-10-2018 IPR037401 SnoaL-like domain RAM_18450 3140ea0cdf4e8cc1a503e4aee62e52c4 85 Pfam PF00550 Phosphopantetheine attachment site 9 77 2.2E-10 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_18450 3140ea0cdf4e8cc1a503e4aee62e52c4 85 Gene3D G3DSA:1.10.1200.10 1 81 1.5E-17 T 13-10-2018 IPR036736 ACP-like superfamily RAM_18450 3140ea0cdf4e8cc1a503e4aee62e52c4 85 SUPERFAMILY SSF47336 7 81 4.97E-15 T 13-10-2018 IPR036736 ACP-like superfamily RAM_14835 2ed7de6c6b00e3fe65f17f843298fff2 479 Gene3D G3DSA:3.30.70.2450 171 259 1.3E-103 T 13-10-2018 RAM_14835 2ed7de6c6b00e3fe65f17f843298fff2 479 SUPERFAMILY SSF51905 2 344 2.74E-61 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_14835 2ed7de6c6b00e3fe65f17f843298fff2 479 Pfam PF01494 FAD binding domain 2 335 1.9E-80 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_14835 2ed7de6c6b00e3fe65f17f843298fff2 479 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 270 285 1.4E-45 T 13-10-2018 RAM_14835 2ed7de6c6b00e3fe65f17f843298fff2 479 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 285 301 1.4E-45 T 13-10-2018 RAM_14835 2ed7de6c6b00e3fe65f17f843298fff2 479 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 4 26 1.4E-45 T 13-10-2018 RAM_14835 2ed7de6c6b00e3fe65f17f843298fff2 479 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 142 157 1.4E-45 T 13-10-2018 RAM_14835 2ed7de6c6b00e3fe65f17f843298fff2 479 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 303 321 1.4E-45 T 13-10-2018 RAM_14835 2ed7de6c6b00e3fe65f17f843298fff2 479 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 321 337 1.4E-45 T 13-10-2018 RAM_14835 2ed7de6c6b00e3fe65f17f843298fff2 479 Gene3D G3DSA:3.40.30.120 382 479 6.4E-20 T 13-10-2018 RAM_14835 2ed7de6c6b00e3fe65f17f843298fff2 479 Gene3D G3DSA:3.50.50.60 4 333 1.3E-103 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_00220 d0ed856eecddb1800efcf27b06041958 607 Pfam PF07730 Histidine kinase 402 469 2.4E-14 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_00220 d0ed856eecddb1800efcf27b06041958 607 Gene3D G3DSA:3.30.565.10 472 590 9.8E-20 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_00220 d0ed856eecddb1800efcf27b06041958 607 SUPERFAMILY SSF55874 506 588 1.18E-12 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_36505 690168ae766668d3e39edc7daeced9c0 244 SMART SM00530 16 71 5.4E-4 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_36505 690168ae766668d3e39edc7daeced9c0 244 SUPERFAMILY SSF47413 11 68 2.95E-10 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_36505 690168ae766668d3e39edc7daeced9c0 244 Gene3D G3DSA:1.10.260.40 12 85 3.0E-9 T 13-10-2018 RAM_36505 690168ae766668d3e39edc7daeced9c0 244 Pfam PF13560 Helix-turn-helix domain 13 68 2.6E-8 T 13-10-2018 RAM_14735 be7b9ba15a6d73d65f0ecf39d214f41b 152 Gene3D G3DSA:3.40.140.10 4 148 6.4E-32 T 13-10-2018 RAM_14735 be7b9ba15a6d73d65f0ecf39d214f41b 152 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 7 100 2.6E-17 T 13-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain RAM_14735 be7b9ba15a6d73d65f0ecf39d214f41b 152 SUPERFAMILY SSF53927 6 143 2.38E-33 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 RAM_12745 43142c56362060171097e6871f97a7b4 165 TIGRFAM TIGR00026 hi_GC_TIGR00026: deazaflavin-dependent oxidoreductase, nitroreductase family 55 161 4.6E-34 T 13-10-2018 IPR004378 F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 RAM_12745 43142c56362060171097e6871f97a7b4 165 Gene3D G3DSA:2.30.110.10 16 164 9.0E-45 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_12745 43142c56362060171097e6871f97a7b4 165 Pfam PF04075 F420H(2)-dependent quinone reductase 29 162 6.6E-37 T 13-10-2018 IPR004378 F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 RAM_45150 33b35dbf5d5a86255fc123ce9baed993 789 SMART SM00487 2 181 2.1E-7 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RAM_45150 33b35dbf5d5a86255fc123ce9baed993 789 SMART SM00490 240 321 1.1E-12 T 13-10-2018 IPR001650 Helicase, C-terminal RAM_45150 33b35dbf5d5a86255fc123ce9baed993 789 TIGRFAM TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase 1 579 5.6E-275 T 13-10-2018 IPR022307 DEAD/DEAH-box helicase, putative, actinobacteria RAM_45150 33b35dbf5d5a86255fc123ce9baed993 789 Gene3D G3DSA:3.40.50.300 1 164 1.0E-31 T 13-10-2018 RAM_45150 33b35dbf5d5a86255fc123ce9baed993 789 SUPERFAMILY SSF52540 2 331 1.93E-35 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_45150 33b35dbf5d5a86255fc123ce9baed993 789 Pfam PF00270 DEAD/DEAH box helicase 2 151 1.3E-15 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RAM_45150 33b35dbf5d5a86255fc123ce9baed993 789 Pfam PF00271 Helicase conserved C-terminal domain 213 321 8.6E-9 T 13-10-2018 IPR001650 Helicase, C-terminal RAM_45150 33b35dbf5d5a86255fc123ce9baed993 789 Pfam PF09369 Domain of unknown function (DUF1998) 677 756 4.4E-18 T 13-10-2018 IPR018973 DEAD/DEAH-box helicase, putative RAM_45150 33b35dbf5d5a86255fc123ce9baed993 789 Gene3D G3DSA:3.40.50.300 200 346 6.7E-16 T 13-10-2018 RAM_12170 fe7a9d1fac18deced9e77be2a030505e 154 Pfam PF01476 LysM domain 101 147 1.1E-6 T 13-10-2018 IPR018392 LysM domain RAM_12170 fe7a9d1fac18deced9e77be2a030505e 154 Gene3D G3DSA:3.10.350.10 88 152 7.2E-8 T 13-10-2018 IPR036779 LysM domain superfamily RAM_32265 e72e2112399483ec1759c55dc9abfbec 829 SUPERFAMILY SSF46785 742 807 1.63E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_32265 e72e2112399483ec1759c55dc9abfbec 829 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 119 228 3.9E-7 T 13-10-2018 IPR025199 DNA translocase FtsK, 4TM region RAM_32265 e72e2112399483ec1759c55dc9abfbec 829 Gene3D G3DSA:1.10.10.10 745 806 3.2E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_32265 e72e2112399483ec1759c55dc9abfbec 829 Pfam PF09397 Ftsk gamma domain 746 802 1.2E-21 T 13-10-2018 IPR018541 FtsK gamma domain RAM_32265 e72e2112399483ec1759c55dc9abfbec 829 Gene3D G3DSA:3.30.980.40 334 436 1.0E-30 T 13-10-2018 RAM_32265 e72e2112399483ec1759c55dc9abfbec 829 SMART SM00843 741 805 3.2E-29 T 13-10-2018 IPR018541 FtsK gamma domain RAM_32265 e72e2112399483ec1759c55dc9abfbec 829 Pfam PF01580 FtsK/SpoIIIE family 440 640 3.9E-61 T 13-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 RAM_32265 e72e2112399483ec1759c55dc9abfbec 829 Gene3D G3DSA:3.40.50.300 437 726 9.2E-105 T 13-10-2018 RAM_32265 e72e2112399483ec1759c55dc9abfbec 829 SUPERFAMILY SSF52540 414 712 6.73E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_11845 76c33f1e50d3c4a1608ba9e034363355 554 Pfam PF05960 Bacterial protein of unknown function (DUF885) 17 550 5.4E-157 T 13-10-2018 IPR010281 Protein of unknown function DUF885 RAM_11850 148a33d35f4548daca744b1215343a56 288 Pfam PF00892 EamA-like transporter family 151 280 2.0E-16 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RAM_11850 148a33d35f4548daca744b1215343a56 288 SUPERFAMILY SSF103481 185 285 1.57E-10 T 13-10-2018 RAM_41315 805e351a0bb805d714ef2d42d64e2e57 344 Pfam PF13343 Bacterial extracellular solute-binding protein 79 306 6.8E-29 T 13-10-2018 RAM_41315 805e351a0bb805d714ef2d42d64e2e57 344 TIGRFAM TIGR01254 sfuA: ABC transporter periplasmic binding protein, thiB subfamily 30 339 2.6E-69 T 13-10-2018 IPR005948 Thiamine/thiamin pyrophosphate-binding periplasmic protein, ABC transporter GO:0015888|GO:0030975 RAM_41315 805e351a0bb805d714ef2d42d64e2e57 344 Gene3D G3DSA:3.40.190.10 131 340 2.0E-102 T 13-10-2018 RAM_41315 805e351a0bb805d714ef2d42d64e2e57 344 Gene3D G3DSA:3.40.190.10 33 314 2.0E-102 T 13-10-2018 RAM_41315 805e351a0bb805d714ef2d42d64e2e57 344 SUPERFAMILY SSF53850 31 340 1.28E-53 T 13-10-2018 RAM_34195 01401f93d3cacfb71634963a790674f3 167 SUPERFAMILY SSF54909 20 123 2.23E-13 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_34195 01401f93d3cacfb71634963a790674f3 167 Pfam PF11695 Domain of unknown function (DUF3291) 6 148 4.6E-57 T 13-10-2018 IPR021708 Domain of unknown function DUF3291 RAM_17295 a2defd2db2403b56e6d6e7ab2decd85f 489 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 46 57 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RAM_17295 a2defd2db2403b56e6d6e7ab2decd85f 489 Gene3D G3DSA:3.50.50.60 158 414 6.6E-103 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_17295 a2defd2db2403b56e6d6e7ab2decd85f 489 Gene3D G3DSA:3.40.50.720 118 479 6.6E-103 T 13-10-2018 RAM_17295 a2defd2db2403b56e6d6e7ab2decd85f 489 Pfam PF00037 4Fe-4S binding domain 40 61 1.5E-7 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RAM_17295 a2defd2db2403b56e6d6e7ab2decd85f 489 Gene3D G3DSA:3.30.70.20 2 97 1.8E-23 T 13-10-2018 RAM_17295 a2defd2db2403b56e6d6e7ab2decd85f 489 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 117 268 3.7E-10 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAM_17295 a2defd2db2403b56e6d6e7ab2decd85f 489 PRINTS PR00419 Adrenodoxin reductase family signature 251 265 1.5E-14 T 13-10-2018 RAM_17295 a2defd2db2403b56e6d6e7ab2decd85f 489 PRINTS PR00419 Adrenodoxin reductase family signature 117 139 1.5E-14 T 13-10-2018 RAM_17295 a2defd2db2403b56e6d6e7ab2decd85f 489 PRINTS PR00419 Adrenodoxin reductase family signature 141 154 1.5E-14 T 13-10-2018 RAM_17295 a2defd2db2403b56e6d6e7ab2decd85f 489 SUPERFAMILY SSF51971 115 409 1.12E-40 T 13-10-2018 RAM_17295 a2defd2db2403b56e6d6e7ab2decd85f 489 SUPERFAMILY SSF54862 8 71 2.88E-15 T 13-10-2018 RAM_40910 0e86f36292c4405b62f22dc4d69f4442 468 Pfam PF01861 Protein of unknown function DUF43 94 279 5.0E-28 T 13-10-2018 IPR002723 N(4)-bis(aminopropyl)spermidine synthase, C-terminal RAM_40910 0e86f36292c4405b62f22dc4d69f4442 468 Gene3D G3DSA:3.40.50.150 91 306 1.3E-54 T 13-10-2018 RAM_40910 0e86f36292c4405b62f22dc4d69f4442 468 SUPERFAMILY SSF53335 151 273 2.91E-10 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_40910 0e86f36292c4405b62f22dc4d69f4442 468 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 206 212 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RAM_15810 2c9ba892d39bb402d6a0e99e17b55434 186 Pfam PF11706 CGNR zinc finger 127 170 3.8E-17 T 13-10-2018 IPR021005 Zinc finger, CGNR RAM_15810 2c9ba892d39bb402d6a0e99e17b55434 186 Gene3D G3DSA:1.10.3300.10 7 172 2.3E-22 T 13-10-2018 IPR023286 ABATE domain superfamily RAM_15810 2c9ba892d39bb402d6a0e99e17b55434 186 SUPERFAMILY SSF160904 2 169 7.72E-36 T 13-10-2018 RAM_15810 2c9ba892d39bb402d6a0e99e17b55434 186 Pfam PF07336 Putative stress-induced transcription regulator 7 122 6.8E-17 T 13-10-2018 IPR010852 Putative stress-induced transcription regulator RAM_16680 9fe4236584947632483d3fc064dbf285 410 Pfam PF01566 Natural resistance-associated macrophage protein 31 378 2.1E-48 T 13-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 RAM_35155 0bf78cce1065d049d37257d23e4a4e5b 392 Gene3D G3DSA:1.10.540.10 3 111 8.6E-26 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RAM_35155 0bf78cce1065d049d37257d23e4a4e5b 392 Gene3D G3DSA:2.40.110.10 113 206 4.3E-26 T 13-10-2018 RAM_35155 0bf78cce1065d049d37257d23e4a4e5b 392 PIRSF PIRSF016578 1 392 1.2E-106 T 13-10-2018 RAM_35155 0bf78cce1065d049d37257d23e4a4e5b 392 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 240 371 9.8E-23 T 13-10-2018 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain RAM_35155 0bf78cce1065d049d37257d23e4a4e5b 392 Gene3D G3DSA:1.20.140.10 216 391 2.3E-29 T 13-10-2018 RAM_35155 0bf78cce1065d049d37257d23e4a4e5b 392 SUPERFAMILY SSF47203 227 381 7.99E-9 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_35155 0bf78cce1065d049d37257d23e4a4e5b 392 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 25 88 2.8E-4 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RAM_35155 0bf78cce1065d049d37257d23e4a4e5b 392 SUPERFAMILY SSF56645 6 205 8.25E-30 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_18315 9840011826aa9c83b3ba87fcd5eea27c 205 Gene3D G3DSA:1.10.357.10 12 202 2.5E-40 T 13-10-2018 RAM_18315 9840011826aa9c83b3ba87fcd5eea27c 205 SUPERFAMILY SSF48498 95 195 2.26E-9 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_18315 9840011826aa9c83b3ba87fcd5eea27c 205 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 49 72 1.7E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_18315 9840011826aa9c83b3ba87fcd5eea27c 205 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 29 42 1.7E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_18315 9840011826aa9c83b3ba87fcd5eea27c 205 SUPERFAMILY SSF46689 15 99 9.98E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_18315 9840011826aa9c83b3ba87fcd5eea27c 205 Pfam PF00440 Bacterial regulatory proteins, tetR family 30 74 9.2E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_19875 bb93fe7cede572504400156c0fa6b682 134 Pfam PF13396 Phospholipase_D-nuclease N-terminal 26 68 9.1E-6 T 13-10-2018 IPR027379 Cardiolipin synthase N-terminal RAM_07165 c45b42d4c5646910bf6d1c31d720a837 462 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 317 332 1.9E-8 T 13-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RAM_07165 c45b42d4c5646910bf6d1c31d720a837 462 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 336 348 1.9E-8 T 13-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RAM_07165 c45b42d4c5646910bf6d1c31d720a837 462 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 166 181 1.9E-8 T 13-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RAM_07165 c45b42d4c5646910bf6d1c31d720a837 462 Gene3D G3DSA:2.60.40.1730 47 231 7.0E-23 T 13-10-2018 RAM_07165 c45b42d4c5646910bf6d1c31d720a837 462 SUPERFAMILY SSF55486 257 461 3.08E-46 T 13-10-2018 RAM_07165 c45b42d4c5646910bf6d1c31d720a837 462 SUPERFAMILY SSF63737 34 229 3.92E-31 T 13-10-2018 RAM_07165 c45b42d4c5646910bf6d1c31d720a837 462 Pfam PF01433 Peptidase family M1 domain 316 453 2.6E-24 T 13-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RAM_07165 c45b42d4c5646910bf6d1c31d720a837 462 Gene3D G3DSA:1.10.390.60 250 458 7.3E-36 T 13-10-2018 RAM_32535 c19a28853f42b2c5d6ff1ebbd0c2c7ab 254 Pfam PF13714 Phosphoenolpyruvate phosphomutase 4 232 2.0E-56 T 13-10-2018 RAM_32535 c19a28853f42b2c5d6ff1ebbd0c2c7ab 254 SUPERFAMILY SSF51621 3 237 1.15E-41 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 RAM_32535 c19a28853f42b2c5d6ff1ebbd0c2c7ab 254 Gene3D G3DSA:3.20.20.60 1 232 1.9E-52 T 13-10-2018 RAM_23395 58706eacadf0ae6b0e2a496c93b13d77 381 Pfam PF01494 FAD binding domain 5 314 7.9E-19 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_23395 58706eacadf0ae6b0e2a496c93b13d77 381 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 278 293 8.3E-12 T 13-10-2018 RAM_23395 58706eacadf0ae6b0e2a496c93b13d77 381 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 8.3E-12 T 13-10-2018 RAM_23395 58706eacadf0ae6b0e2a496c93b13d77 381 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 146 161 8.3E-12 T 13-10-2018 RAM_23395 58706eacadf0ae6b0e2a496c93b13d77 381 SUPERFAMILY SSF51905 5 375 5.28E-49 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_23395 58706eacadf0ae6b0e2a496c93b13d77 381 Gene3D G3DSA:3.50.50.60 8 337 2.2E-64 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_23395 58706eacadf0ae6b0e2a496c93b13d77 381 Gene3D G3DSA:3.30.9.50 41 268 2.2E-64 T 13-10-2018 RAM_31825 e91725248914b95d34e2efc6fad8fac0 284 Gene3D G3DSA:3.40.710.10 58 275 2.6E-22 T 13-10-2018 RAM_31825 e91725248914b95d34e2efc6fad8fac0 284 SUPERFAMILY SSF56601 63 264 1.94E-17 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_31825 e91725248914b95d34e2efc6fad8fac0 284 Pfam PF13354 Beta-lactamase enzyme family 118 225 4.1E-8 T 13-10-2018 RAM_46320 5fd6a88c2302d5d23ee4e7908d1efd0b 218 Pfam PF04892 VanZ like family 54 165 6.6E-16 T 13-10-2018 IPR006976 VanZ-like RAM_02865 d8ec490045da26f8afc8d12a28e3e772 443 Pfam PF13229 Right handed beta helix region 95 243 4.0E-13 T 13-10-2018 IPR039448 Right handed beta helix domain RAM_02865 d8ec490045da26f8afc8d12a28e3e772 443 SMART SM00710 69 94 5900.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_02865 d8ec490045da26f8afc8d12a28e3e772 443 SMART SM00710 275 296 37.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_02865 d8ec490045da26f8afc8d12a28e3e772 443 SMART SM00710 144 179 4700.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_02865 d8ec490045da26f8afc8d12a28e3e772 443 SMART SM00710 180 202 17.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_02865 d8ec490045da26f8afc8d12a28e3e772 443 SMART SM00710 96 118 45.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_02865 d8ec490045da26f8afc8d12a28e3e772 443 SMART SM00710 204 226 3600.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_02865 d8ec490045da26f8afc8d12a28e3e772 443 SMART SM00710 227 252 1000.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_02865 d8ec490045da26f8afc8d12a28e3e772 443 Gene3D G3DSA:2.160.20.10 9 117 2.3E-9 T 13-10-2018 IPR012334 Pectin lyase fold RAM_02865 d8ec490045da26f8afc8d12a28e3e772 443 Gene3D G3DSA:2.160.20.10 118 432 3.5E-14 T 13-10-2018 IPR012334 Pectin lyase fold RAM_02865 d8ec490045da26f8afc8d12a28e3e772 443 SUPERFAMILY SSF51126 10 297 1.89E-26 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor RAM_09925 0ab802875f117200cc1e8aecd99600b7 267 Pfam PF02517 CAAX protease self-immunity 159 252 1.5E-12 T 13-10-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 RAM_19660 23fb7d2b783529ddf94db71f27e763bb 367 Pfam PF00144 Beta-lactamase 25 344 1.1E-40 T 13-10-2018 IPR001466 Beta-lactamase-related RAM_19660 23fb7d2b783529ddf94db71f27e763bb 367 SUPERFAMILY SSF56601 12 361 1.59E-52 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_19660 23fb7d2b783529ddf94db71f27e763bb 367 Gene3D G3DSA:3.40.710.30 18 366 1.8E-50 T 13-10-2018 RAM_01115 5c743d2c09d9bb7fb18fe9e79ab3b908 242 SUPERFAMILY SSF69593 19 209 3.66E-37 T 13-10-2018 RAM_01115 5c743d2c09d9bb7fb18fe9e79ab3b908 242 Pfam PF01553 Acyltransferase 23 149 2.3E-27 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 RAM_01115 5c743d2c09d9bb7fb18fe9e79ab3b908 242 SMART SM00563 38 152 3.3E-34 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 RAM_01555 4fb5a2a7a0eb76f23083d49b97d214fb 149 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 8 146 9.5E-20 T 13-10-2018 IPR019587 Polyketide cyclase/dehydrase RAM_01555 4fb5a2a7a0eb76f23083d49b97d214fb 149 Gene3D G3DSA:3.30.530.20 6 146 8.6E-15 T 13-10-2018 IPR023393 START-like domain superfamily RAM_01555 4fb5a2a7a0eb76f23083d49b97d214fb 149 SUPERFAMILY SSF55961 7 145 4.72E-18 T 13-10-2018 RAM_33650 29883bd7ab85b827851b7cfad70656f7 378 Gene3D G3DSA:3.40.50.720 168 329 1.4E-139 T 13-10-2018 RAM_33650 29883bd7ab85b827851b7cfad70656f7 378 Pfam PF13823 Alcohol dehydrogenase GroES-associated 1 23 1.2E-11 T 13-10-2018 IPR027399 Alcohol dehydrogenase GroES-associated RAM_33650 29883bd7ab85b827851b7cfad70656f7 378 SUPERFAMILY SSF51735 153 340 2.3E-63 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_33650 29883bd7ab85b827851b7cfad70656f7 378 Pfam PF00107 Zinc-binding dehydrogenase 187 256 3.1E-9 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RAM_33650 29883bd7ab85b827851b7cfad70656f7 378 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 58 72 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 RAM_33650 29883bd7ab85b827851b7cfad70656f7 378 SUPERFAMILY SSF50129 1 188 1.73E-63 T 13-10-2018 IPR011032 GroES-like superfamily RAM_33650 29883bd7ab85b827851b7cfad70656f7 378 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 137 2.1E-28 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_33650 29883bd7ab85b827851b7cfad70656f7 378 Gene3D G3DSA:3.90.180.10 8 365 1.4E-139 T 13-10-2018 RAM_00640 4aea835182c1c05db2c03a1d2d5466eb 160 Pfam PF10898 Protein of unknown function (DUF2716) 1 134 1.1E-43 T 13-10-2018 IPR020323 Protein of unknown function DUF2716 RAM_00640 4aea835182c1c05db2c03a1d2d5466eb 160 ProDom PD095338 YXII PLASMID 1 147 1.0E-19 T 13-10-2018 IPR020323 Protein of unknown function DUF2716 RAM_06480 de524b23c0ed08c26935ff19f898e911 524 SUPERFAMILY SSF55874 280 373 3.01E-7 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_06480 de524b23c0ed08c26935ff19f898e911 524 Pfam PF07730 Histidine kinase 182 246 2.7E-10 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_06480 de524b23c0ed08c26935ff19f898e911 524 Gene3D G3DSA:3.30.565.10 250 374 1.1E-23 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_07895 1cf00ab1ed7121396d8d38415f205616 364 Pfam PF13738 Pyridine nucleotide-disulphide oxidoreductase 2 209 2.5E-19 T 13-10-2018 RAM_07895 1cf00ab1ed7121396d8d38415f205616 364 Gene3D G3DSA:3.50.50.60 1 234 8.2E-71 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_07895 1cf00ab1ed7121396d8d38415f205616 364 SUPERFAMILY SSF51905 1 223 3.99E-55 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_39900 37f63b38553501028d88d28ada7f8355 272 Gene3D G3DSA:3.40.50.720 5 256 9.5E-58 T 13-10-2018 RAM_39900 37f63b38553501028d88d28ada7f8355 272 SUPERFAMILY SSF51735 4 264 9.57E-38 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_39900 37f63b38553501028d88d28ada7f8355 272 Gene3D G3DSA:3.90.25.10 124 258 9.5E-58 T 13-10-2018 RAM_39900 37f63b38553501028d88d28ada7f8355 272 Pfam PF05368 NmrA-like family 122 208 3.6E-5 T 13-10-2018 IPR008030 NmrA-like domain Reactome: R-HSA-70635 RAM_39900 37f63b38553501028d88d28ada7f8355 272 Pfam PF13460 NAD(P)H-binding 8 105 7.5E-10 T 13-10-2018 IPR016040 NAD(P)-binding domain RAM_14385 542b4ee2ec03a4eac368177ac54eb778 390 SUPERFAMILY SSF101960 32 386 2.09E-90 T 13-10-2018 IPR037284 SUF system FeS cluster assembly, SufBD superfamily RAM_14385 542b4ee2ec03a4eac368177ac54eb778 390 Pfam PF01458 Uncharacterized protein family (UPF0051) 141 360 1.4E-73 T 13-10-2018 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 RAM_14385 542b4ee2ec03a4eac368177ac54eb778 390 TIGRFAM TIGR01981 sufD: FeS assembly protein SufD 106 377 2.6E-80 T 13-10-2018 IPR011542 SUF system FeS cluster assembly, SufD GO:0016226 RAM_20440 2fdff83937393bc262fe0187ac04adf4 252 Pfam PF00535 Glycosyl transferase family 2 7 179 6.9E-21 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RAM_20440 2fdff83937393bc262fe0187ac04adf4 252 Gene3D G3DSA:3.90.550.10 2 229 2.9E-31 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_20440 2fdff83937393bc262fe0187ac04adf4 252 SUPERFAMILY SSF53448 4 241 3.19E-37 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_15110 a0e5326222d9c1c5e2692a18daf2b9ea 333 Pfam PF13404 AsnC-type helix-turn-helix domain 5 44 2.4E-6 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RAM_15110 a0e5326222d9c1c5e2692a18daf2b9ea 333 Gene3D G3DSA:1.10.10.10 5 49 1.7E-6 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_11870 b27fb0a3b410c3c86b008915de33564f 255 SUPERFAMILY SSF109854 9 139 2.75E-9 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_11870 b27fb0a3b410c3c86b008915de33564f 255 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 20 228 4.8E-20 T 13-10-2018 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type RAM_11870 b27fb0a3b410c3c86b008915de33564f 255 Pfam PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain 22 134 1.9E-16 T 13-10-2018 IPR024344 Mycothiol-dependent maleylpyruvate isomerase, metal-binding domain GO:0046872 RAM_11870 b27fb0a3b410c3c86b008915de33564f 255 Gene3D G3DSA:1.20.120.450 15 134 4.2E-5 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_30225 52000513f35bb655fcd1889a27832728 100 Pfam PF13466 STAS domain 19 91 1.4E-12 T 13-10-2018 IPR002645 STAS domain RAM_30225 52000513f35bb655fcd1889a27832728 100 SUPERFAMILY SSF52091 14 96 2.55E-12 T 13-10-2018 IPR036513 STAS domain superfamily RAM_30225 52000513f35bb655fcd1889a27832728 100 Gene3D G3DSA:3.30.750.24 10 98 3.6E-15 T 13-10-2018 IPR036513 STAS domain superfamily RAM_05240 b91e114e301b619281506b6caacf7ec6 310 SMART SM00880 35 292 1.1E-53 T 13-10-2018 IPR007899 CHAD domain RAM_05240 b91e114e301b619281506b6caacf7ec6 310 Pfam PF05235 CHAD domain 36 261 6.4E-53 T 13-10-2018 IPR007899 CHAD domain RAM_05240 b91e114e301b619281506b6caacf7ec6 310 Gene3D G3DSA:1.40.20.10 19 309 7.1E-62 T 13-10-2018 IPR038186 CHAD domain superfamily RAM_41535 74910c3c1ba4063813ace897ba502eb1 879 Pfam PF03190 Protein of unknown function, DUF255 226 386 1.1E-72 T 13-10-2018 IPR004879 Domain of unknown function DUF255 RAM_41535 74910c3c1ba4063813ace897ba502eb1 879 SUPERFAMILY SSF52833 226 350 5.31E-29 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RAM_41535 74910c3c1ba4063813ace897ba502eb1 879 Gene3D G3DSA:3.40.30.10 224 391 3.2E-65 T 13-10-2018 RAM_41535 74910c3c1ba4063813ace897ba502eb1 879 SUPERFAMILY SSF48208 412 743 1.19E-71 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_38400 14e6c35d26c29da3f1c79ca66cc8ca5e 340 SUPERFAMILY SSF51735 1 313 1.35E-44 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_38400 14e6c35d26c29da3f1c79ca66cc8ca5e 340 Gene3D G3DSA:3.40.50.720 1 309 1.1E-45 T 13-10-2018 RAM_38400 14e6c35d26c29da3f1c79ca66cc8ca5e 340 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 228 1.9E-19 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 RAM_39650 85d13f80d2d04d71ab16c295dcec696d 99 Hamap MF_00302 ATP-dependent Clp protease adapter protein ClpS [clpS]. 6 99 18.374 T 13-10-2018 IPR022935 ATP-dependent Clp protease adaptor protein ClpS RAM_39650 85d13f80d2d04d71ab16c295dcec696d 99 SUPERFAMILY SSF54736 21 96 1.26E-24 T 13-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like RAM_39650 85d13f80d2d04d71ab16c295dcec696d 99 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 23 93 1.1E-22 T 13-10-2018 IPR003769 Adaptor protein ClpS, core GO:0030163 Reactome: R-HSA-983168 RAM_39650 85d13f80d2d04d71ab16c295dcec696d 99 Gene3D G3DSA:3.30.1390.10 3 97 1.2E-19 T 13-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like RAM_03015 748b0d213cafcda46cf8903265b5715a 301 SUPERFAMILY SSF52266 46 299 2.17E-62 T 13-10-2018 RAM_03015 748b0d213cafcda46cf8903265b5715a 301 Gene3D G3DSA:3.40.50.1110 44 299 3.9E-77 T 13-10-2018 IPR036514 SGNH hydrolase superfamily RAM_03015 748b0d213cafcda46cf8903265b5715a 301 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 50 288 1.1E-29 T 13-10-2018 IPR013830 SGNH hydrolase-type esterase domain RAM_23565 4d2576ce10c2456180eac3136ae1b594 229 SUPERFAMILY SSF53335 29 195 7.9E-31 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_23565 4d2576ce10c2456180eac3136ae1b594 229 Pfam PF08241 Methyltransferase domain 33 123 2.3E-19 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 RAM_23565 4d2576ce10c2456180eac3136ae1b594 229 Gene3D G3DSA:3.40.50.150 6 185 2.3E-32 T 13-10-2018 RAM_41265 6858e6f91fc8298a6a0f703afad947a8 99 SUPERFAMILY SSF54909 1 84 4.56E-14 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_41265 6858e6f91fc8298a6a0f703afad947a8 99 Pfam PF03795 YCII-related domain 1 82 7.3E-10 T 13-10-2018 IPR005545 YCII-related RAM_00830 693cc759bddbc1e42535e4180e4ffc60 335 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 2 212 8.6E-70 T 13-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 RAM_00830 693cc759bddbc1e42535e4180e4ffc60 335 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 3 320 3.5E-104 T 13-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 RAM_00830 693cc759bddbc1e42535e4180e4ffc60 335 PIRSF PIRSF000267 1 334 3.4E-111 T 13-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 RAM_24240 17c1728892200aabf5d3a5a02e971ff1 349 Gene3D G3DSA:3.40.50.1100 33 138 1.6E-55 T 13-10-2018 RAM_24240 17c1728892200aabf5d3a5a02e971ff1 349 Gene3D G3DSA:3.40.50.1100 139 290 1.6E-55 T 13-10-2018 RAM_24240 17c1728892200aabf5d3a5a02e971ff1 349 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 34 264 1.8E-27 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RAM_24240 17c1728892200aabf5d3a5a02e971ff1 349 SUPERFAMILY SSF53686 33 303 4.45E-44 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RAM_17335 4e2def1b8354ae21e9f381b83f4ed384 308 SUPERFAMILY SSF161098 78 295 6.8E-54 T 13-10-2018 IPR035906 MetI-like superfamily RAM_17335 4e2def1b8354ae21e9f381b83f4ed384 308 Gene3D G3DSA:1.10.3720.10 72 307 4.8E-61 T 13-10-2018 IPR035906 MetI-like superfamily RAM_17335 4e2def1b8354ae21e9f381b83f4ed384 308 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 109 305 4.8E-17 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_39455 1d2394220ce6434b015c69219de32994 139 SMART SM00960 10 100 5.0E-31 T 13-10-2018 IPR004942 Roadblock/LAMTOR2 domain RAM_39455 1d2394220ce6434b015c69219de32994 139 Gene3D G3DSA:3.30.450.30 6 132 5.8E-43 T 13-10-2018 RAM_39455 1d2394220ce6434b015c69219de32994 139 Pfam PF03259 Roadblock/LC7 domain 9 100 9.8E-26 T 13-10-2018 IPR004942 Roadblock/LAMTOR2 domain RAM_39455 1d2394220ce6434b015c69219de32994 139 SUPERFAMILY SSF103196 3 129 3.14E-38 T 13-10-2018 RAM_21510 cc9f65a79166ba87eb08c712619dfebe 210 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 62 9.4E-16 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_21510 cc9f65a79166ba87eb08c712619dfebe 210 SUPERFAMILY SSF46689 5 78 7.18E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_21510 cc9f65a79166ba87eb08c712619dfebe 210 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 9.1E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_21510 cc9f65a79166ba87eb08c712619dfebe 210 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 9.1E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_21510 cc9f65a79166ba87eb08c712619dfebe 210 Gene3D G3DSA:1.10.357.10 4 203 7.1E-47 T 13-10-2018 RAM_20165 e34ef61d522ea51a11ebbb30a76a5ade 398 Gene3D G3DSA:3.40.50.2000 3 220 3.1E-107 T 13-10-2018 RAM_20165 e34ef61d522ea51a11ebbb30a76a5ade 398 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 4 127 5.7E-11 T 13-10-2018 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RAM_20165 e34ef61d522ea51a11ebbb30a76a5ade 398 SUPERFAMILY SSF53756 3 397 1.77E-79 T 13-10-2018 RAM_20165 e34ef61d522ea51a11ebbb30a76a5ade 398 Gene3D G3DSA:3.40.50.2000 221 384 3.1E-107 T 13-10-2018 RAM_04070 3e409a96626aacb3ce87ffd282554d24 141 Pfam PF08044 Domain of unknown function (DUF1707) 9 61 5.9E-19 T 13-10-2018 IPR012551 Protein of unknown function DUF1707 RAM_13240 baad9857f4bffb192e9f580d521dccbf 160 Pfam PF11292 Protein of unknown function (DUF3093) 14 157 2.1E-48 T 13-10-2018 IPR021443 Protein of unknown function DUF3093 RAM_11765 8c2acacafcfe1e740791360ae16f34dc 459 SUPERFAMILY SSF51569 14 458 3.52E-191 T 13-10-2018 RAM_11765 8c2acacafcfe1e740791360ae16f34dc 459 Pfam PF01474 Class-II DAHP synthetase family 27 454 1.4E-187 T 13-10-2018 IPR002480 DAHP synthetase, class II GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 RAM_11765 8c2acacafcfe1e740791360ae16f34dc 459 TIGRFAM TIGR01358 DAHP_synth_II: 3-deoxy-7-phosphoheptulonate synthase 22 458 1.0E-211 T 13-10-2018 IPR002480 DAHP synthetase, class II GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 RAM_05865 d6bb563c7b4af8ff0ef4bd14b2b5d2f3 341 SUPERFAMILY SSF160964 39 100 3.01E-6 T 13-10-2018 RAM_05865 d6bb563c7b4af8ff0ef4bd14b2b5d2f3 341 SUPERFAMILY SSF161098 84 326 5.23E-50 T 13-10-2018 IPR035906 MetI-like superfamily RAM_05865 d6bb563c7b4af8ff0ef4bd14b2b5d2f3 341 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 126 325 4.9E-13 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_05865 d6bb563c7b4af8ff0ef4bd14b2b5d2f3 341 Gene3D G3DSA:1.10.3720.10 80 338 1.6E-59 T 13-10-2018 IPR035906 MetI-like superfamily RAM_15770 24e5a19eb37d137f2828ce013f9189a2 132 Pfam PF11774 Lsr2 2 108 3.0E-38 T 13-10-2018 IPR024412 Lsr2 RAM_15770 24e5a19eb37d137f2828ce013f9189a2 132 Gene3D G3DSA:1.20.890.50 76 116 2.0E-12 T 13-10-2018 RAM_15770 24e5a19eb37d137f2828ce013f9189a2 132 ProDom PD026347 LSR2-LIKE LSR2 ANTIGEN IMMUNE PRECURSOR RESPONSE SIGNAL PLASMID LYSYL GP61 1 110 3.0E-20 T 13-10-2018 IPR024412 Lsr2 RAM_15770 24e5a19eb37d137f2828ce013f9189a2 132 Gene3D G3DSA:3.30.60.230 1 60 1.9E-24 T 13-10-2018 RAM_12540 4a0ff81923d5f1ddeec8f153ff7ad440 102 Pfam PF01022 Bacterial regulatory protein, arsR family 10 54 9.0E-19 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_12540 4a0ff81923d5f1ddeec8f153ff7ad440 102 Gene3D G3DSA:1.10.10.10 1 101 1.2E-32 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_12540 4a0ff81923d5f1ddeec8f153ff7ad440 102 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 23 34 6.0E-12 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_12540 4a0ff81923d5f1ddeec8f153ff7ad440 102 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 51 66 6.0E-12 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_12540 4a0ff81923d5f1ddeec8f153ff7ad440 102 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 36 51 6.0E-12 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_12540 4a0ff81923d5f1ddeec8f153ff7ad440 102 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 4 19 6.0E-12 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_12540 4a0ff81923d5f1ddeec8f153ff7ad440 102 SUPERFAMILY SSF46785 2 93 6.52E-29 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_12540 4a0ff81923d5f1ddeec8f153ff7ad440 102 SMART SM00418 2 80 8.0E-28 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_19920 36bf7cd22aab0e7543764d49a9d27cb5 336 Gene3D G3DSA:2.120.10.30 48 334 1.7E-69 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RAM_19920 36bf7cd22aab0e7543764d49a9d27cb5 336 SUPERFAMILY SSF63829 55 319 4.25E-50 T 13-10-2018 RAM_19920 36bf7cd22aab0e7543764d49a9d27cb5 336 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 67 316 6.1E-41 T 13-10-2018 IPR013658 SMP-30/Gluconolactonase/LRE-like region RAM_33445 ebd5f73af1970e26e4061afc58dd1e5a 353 Gene3D G3DSA:1.10.3210.10 13 145 8.5E-11 T 13-10-2018 RAM_33445 ebd5f73af1970e26e4061afc58dd1e5a 353 Gene3D G3DSA:3.10.450.50 234 351 7.8E-23 T 13-10-2018 RAM_33445 ebd5f73af1970e26e4061afc58dd1e5a 353 Pfam PF01966 HD domain 52 133 1.7E-5 T 13-10-2018 IPR006674 HD domain RAM_33445 ebd5f73af1970e26e4061afc58dd1e5a 353 SUPERFAMILY SSF109604 18 134 1.88E-13 T 13-10-2018 RAM_33445 ebd5f73af1970e26e4061afc58dd1e5a 353 Pfam PF12680 SnoaL-like domain 240 336 1.8E-7 T 13-10-2018 IPR037401 SnoaL-like domain RAM_33445 ebd5f73af1970e26e4061afc58dd1e5a 353 SUPERFAMILY SSF54427 234 341 2.93E-16 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_23985 6f15f6852774ee0c671cf095404c609e 164 Gene3D G3DSA:2.30.110.10 10 139 6.9E-18 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_23985 6f15f6852774ee0c671cf095404c609e 164 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 16 91 3.7E-7 T 13-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RAM_23985 6f15f6852774ee0c671cf095404c609e 164 SUPERFAMILY SSF50475 20 144 2.24E-17 T 13-10-2018 RAM_06520 a21fcf4eaa540fabb8dc7d9c37cdb28d 276 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 40 253 1.1E-48 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RAM_06520 a21fcf4eaa540fabb8dc7d9c37cdb28d 276 SUPERFAMILY SSF53850 2 254 1.04E-52 T 13-10-2018 RAM_06520 a21fcf4eaa540fabb8dc7d9c37cdb28d 276 SMART SM00062 39 263 4.4E-58 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RAM_06520 a21fcf4eaa540fabb8dc7d9c37cdb28d 276 Gene3D G3DSA:3.40.190.10 36 252 9.0E-62 T 13-10-2018 RAM_06520 a21fcf4eaa540fabb8dc7d9c37cdb28d 276 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 62 75 - T 13-10-2018 IPR018313 Solute-binding protein family 3, conserved site RAM_06520 a21fcf4eaa540fabb8dc7d9c37cdb28d 276 Gene3D G3DSA:3.40.190.10 129 221 9.0E-62 T 13-10-2018 RAM_46085 b76b9089a35684ec92334908b1889a54 129 SUPERFAMILY SSF50475 11 127 1.39E-21 T 13-10-2018 RAM_46085 b76b9089a35684ec92334908b1889a54 129 TIGRFAM TIGR03667 Rv3369: PPOX class probable F420-dependent enzyme, Rv3369 family 10 125 2.8E-40 T 13-10-2018 IPR019966 F420-dependent enzyme, PPOX class, family Rv3369, probable RAM_46085 b76b9089a35684ec92334908b1889a54 129 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 10 83 3.0E-14 T 13-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RAM_46085 b76b9089a35684ec92334908b1889a54 129 Gene3D G3DSA:2.30.110.10 9 129 5.1E-25 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_37815 e49514e904a9b9f8ed04db8f641d5d4a 271 Gene3D G3DSA:3.90.25.10 114 247 2.2E-57 T 13-10-2018 RAM_37815 e49514e904a9b9f8ed04db8f641d5d4a 271 Gene3D G3DSA:3.40.50.720 5 245 2.2E-57 T 13-10-2018 RAM_37815 e49514e904a9b9f8ed04db8f641d5d4a 271 SUPERFAMILY SSF51735 3 234 5.18E-38 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_37815 e49514e904a9b9f8ed04db8f641d5d4a 271 Pfam PF13460 NAD(P)H-binding 14 163 3.5E-7 T 13-10-2018 IPR016040 NAD(P)-binding domain RAM_21840 b0eb856e8a79290eb29a15d7395cbbb1 126 SUPERFAMILY SSF54593 1 119 1.21E-14 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_21840 b0eb856e8a79290eb29a15d7395cbbb1 126 Gene3D G3DSA:3.10.180.10 1 125 5.0E-28 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_02660 ba50d6396b0cd932aa2b90a764bef532 405 TIGRFAM TIGR02032 GG-red-SF: geranylgeranyl reductase family 2 310 2.7E-60 T 13-10-2018 IPR011777 Geranylgeranyl reductase family GO:0016628|GO:0055114 RAM_02660 ba50d6396b0cd932aa2b90a764bef532 405 SUPERFAMILY SSF51905 2 351 2.0E-37 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_02660 ba50d6396b0cd932aa2b90a764bef532 405 Pfam PF01494 FAD binding domain 2 162 1.2E-6 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_02660 ba50d6396b0cd932aa2b90a764bef532 405 Gene3D G3DSA:3.50.50.60 1 368 6.3E-81 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_18620 53096dc57c72e20a79124c9880f42a1f 297 Gene3D G3DSA:1.10.10.10 1 75 6.5E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_18620 53096dc57c72e20a79124c9880f42a1f 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 41 1.7E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_18620 53096dc57c72e20a79124c9880f42a1f 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 9 20 1.7E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_18620 53096dc57c72e20a79124c9880f42a1f 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 30 1.7E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_18620 53096dc57c72e20a79124c9880f42a1f 297 SUPERFAMILY SSF46785 1 75 9.58E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_18620 53096dc57c72e20a79124c9880f42a1f 297 SUPERFAMILY SSF53850 92 272 6.7E-5 T 13-10-2018 RAM_18620 53096dc57c72e20a79124c9880f42a1f 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 1 53 1.5E-16 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_09670 ea76910c48ed0375e9eab88909dd048b 420 Hamap MF_01270 Anhydro-N-acetylmuramic acid kinase [anmK]. 27 396 32.516 T 13-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 RAM_09670 ea76910c48ed0375e9eab88909dd048b 420 Gene3D G3DSA:3.30.420.40 171 356 9.4E-99 T 13-10-2018 RAM_09670 ea76910c48ed0375e9eab88909dd048b 420 SUPERFAMILY SSF53067 99 358 1.29E-9 T 13-10-2018 RAM_09670 ea76910c48ed0375e9eab88909dd048b 420 Gene3D G3DSA:3.30.420.40 34 391 9.4E-99 T 13-10-2018 RAM_09670 ea76910c48ed0375e9eab88909dd048b 420 Pfam PF03702 Anhydro-N-acetylmuramic acid kinase 28 395 1.6E-105 T 13-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 RAM_45260 b329a615b9d6dee47ea1cb7d62920003 485 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 12 481 1.2E-144 T 13-10-2018 IPR005279 Dipeptide/tripeptide permease GO:0015833|GO:0016020|GO:1904680 RAM_45260 b329a615b9d6dee47ea1cb7d62920003 485 SUPERFAMILY SSF103473 12 480 3.66E-27 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_45260 b329a615b9d6dee47ea1cb7d62920003 485 Pfam PF00854 POT family 91 449 2.3E-54 T 13-10-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-427975 RAM_45260 b329a615b9d6dee47ea1cb7d62920003 485 ProSitePatterns PS01023 PTR2 family proton/oligopeptide symporters signature 2. 153 165 - T 13-10-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 RAM_45260 b329a615b9d6dee47ea1cb7d62920003 485 Gene3D G3DSA:1.20.1250.20 2 485 1.8E-128 T 13-10-2018 RAM_05950 8efce282adaeb9dcecc3727f5c537ae1 273 SUPERFAMILY SSF102705 4 266 1.15E-76 T 13-10-2018 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily RAM_05950 8efce282adaeb9dcecc3727f5c537ae1 273 Gene3D G3DSA:3.40.1390.30 101 228 6.4E-64 T 13-10-2018 RAM_05950 8efce282adaeb9dcecc3727f5c537ae1 273 TIGRFAM TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family 5 253 4.9E-47 T 13-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 RAM_05950 8efce282adaeb9dcecc3727f5c537ae1 273 Gene3D G3DSA:3.40.1390.30 7 239 6.4E-64 T 13-10-2018 RAM_05950 8efce282adaeb9dcecc3727f5c537ae1 273 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 6 248 5.0E-66 T 13-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 RAM_26830 aa41c874d65a26046ec83cd55710c42e 408 Gene3D G3DSA:3.50.50.60 4 325 1.6E-133 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_26830 aa41c874d65a26046ec83cd55710c42e 408 Gene3D G3DSA:3.30.9.40 65 273 1.6E-133 T 13-10-2018 RAM_26830 aa41c874d65a26046ec83cd55710c42e 408 SUPERFAMILY SSF51905 2 372 7.77E-19 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_22195 7270017e7a1f78c8b4412a68c145225b 433 SUPERFAMILY SSF103473 7 412 4.97E-57 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_22195 7270017e7a1f78c8b4412a68c145225b 433 Gene3D G3DSA:1.20.1250.20 7 420 1.7E-60 T 13-10-2018 RAM_22195 7270017e7a1f78c8b4412a68c145225b 433 ProSitePatterns PS00216 Sugar transport proteins signature 1. 284 300 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RAM_22195 7270017e7a1f78c8b4412a68c145225b 433 Pfam PF00083 Sugar (and other) transporter 10 210 7.1E-19 T 13-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 RAM_22195 7270017e7a1f78c8b4412a68c145225b 433 Pfam PF07690 Major Facilitator Superfamily 237 407 2.1E-9 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_39575 0fd271f6950771bd5fa6f96490c754fe 200 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 3 195 1.3E-46 T 13-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 RAM_39575 0fd271f6950771bd5fa6f96490c754fe 200 Pfam PF01725 Ham1 family 4 193 1.6E-54 T 13-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 RAM_39575 0fd271f6950771bd5fa6f96490c754fe 200 SUPERFAMILY SSF52972 2 198 7.33E-63 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like RAM_39575 0fd271f6950771bd5fa6f96490c754fe 200 Hamap MF_01405 dITP/XTP pyrophosphatase. 2 198 47.132 T 13-10-2018 IPR020922 dITP/XTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.66 RAM_39575 0fd271f6950771bd5fa6f96490c754fe 200 Gene3D G3DSA:3.90.950.10 1 200 4.3E-70 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like RAM_29395 a2b05c2e5e4639595a77dd0cf73289de 448 Gene3D G3DSA:1.20.1740.10 8 441 2.6E-10 T 13-10-2018 RAM_29395 a2b05c2e5e4639595a77dd0cf73289de 448 PIRSF PIRSF006060 3 448 1.3E-10 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RAM_02555 b5bb28914d2ebcc5a8a5e6be17616ad2 531 Pfam PF05140 ResB-like family 34 518 1.9E-128 T 13-10-2018 IPR007816 ResB-like domain RAM_41195 65971789dd72012377d31db763c237d6 1087 Gene3D G3DSA:3.90.550.10 10 242 1.1E-31 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_41195 65971789dd72012377d31db763c237d6 1087 Pfam PF00535 Glycosyl transferase family 2 18 142 6.1E-15 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RAM_41195 65971789dd72012377d31db763c237d6 1087 SUPERFAMILY SSF53448 15 238 8.84E-33 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_22800 552f8393a90e06d644d21a6fe3c0ed79 153 SUPERFAMILY SSF55961 4 108 6.88E-12 T 13-10-2018 RAM_22800 552f8393a90e06d644d21a6fe3c0ed79 153 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 2 120 1.8E-9 T 13-10-2018 IPR019587 Polyketide cyclase/dehydrase RAM_22800 552f8393a90e06d644d21a6fe3c0ed79 153 Gene3D G3DSA:3.30.530.20 1 137 1.7E-13 T 13-10-2018 IPR023393 START-like domain superfamily RAM_37690 3d31001470cbdeab4f0bbe227973b4dc 145 Pfam PF14534 Domain of unknown function (DUF4440) 17 129 6.4E-11 T 13-10-2018 IPR027843 Domain of unknown function DUF4440 RAM_37690 3d31001470cbdeab4f0bbe227973b4dc 145 SUPERFAMILY SSF54427 12 137 1.01E-29 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_37690 3d31001470cbdeab4f0bbe227973b4dc 145 TIGRFAM TIGR02246 TIGR02246: conserved hypothetical protein 13 134 1.8E-29 T 13-10-2018 IPR011944 Steroid delta5-4-isomerase KEGG: 00140+5.3.3.1|KEGG: 00984+5.3.3.1|MetaCyc: PWY-2582|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-699|MetaCyc: PWY-7299 RAM_37690 3d31001470cbdeab4f0bbe227973b4dc 145 Gene3D G3DSA:3.10.450.50 2 137 3.1E-37 T 13-10-2018 RAM_11265 c7c9abdf7df6a5a0513f4ee555ebaa08 133 SUPERFAMILY SSF55961 8 131 3.76E-21 T 13-10-2018 RAM_11265 c7c9abdf7df6a5a0513f4ee555ebaa08 133 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 19 130 8.3E-11 T 13-10-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like RAM_11265 c7c9abdf7df6a5a0513f4ee555ebaa08 133 Gene3D G3DSA:3.30.530.20 8 133 1.0E-19 T 13-10-2018 IPR023393 START-like domain superfamily RAM_10630 897274e3b4ca51a7c9e0697a0905397a 100 Pfam PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch 5 88 9.5E-32 T 13-10-2018 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 RAM_39325 c28b6b7802e97608fa52c10aa94ecae9 296 Gene3D G3DSA:2.120.10.30 23 292 1.9E-52 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RAM_39325 c28b6b7802e97608fa52c10aa94ecae9 296 SUPERFAMILY SSF63829 34 282 1.24E-25 T 13-10-2018 RAM_19370 f391c02fdd8f6da434a55b4cc466e258 80 Pfam PF13586 Transposase DDE domain 22 64 8.5E-8 T 13-10-2018 IPR025668 Transposase DDE domain RAM_03540 48050faafed81032f29d69552c9bc6b9 134 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 23 134 3.5E-40 T 13-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_03540 48050faafed81032f29d69552c9bc6b9 134 Gene3D G3DSA:3.30.420.100 19 134 4.8E-41 T 13-10-2018 RAM_03540 48050faafed81032f29d69552c9bc6b9 134 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 20 134 27.274 T 13-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_03540 48050faafed81032f29d69552c9bc6b9 134 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 20 134 1.3E-47 T 13-10-2018 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_03540 48050faafed81032f29d69552c9bc6b9 134 SUPERFAMILY SSF53137 21 132 9.59E-47 T 13-10-2018 RAM_29250 f7f5146909652ceb86082b0e95c97b10 228 Gene3D G3DSA:1.10.10.10 127 227 2.7E-35 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_29250 f7f5146909652ceb86082b0e95c97b10 228 SUPERFAMILY SSF52172 5 180 7.55E-43 T 13-10-2018 IPR011006 CheY-like superfamily RAM_29250 f7f5146909652ceb86082b0e95c97b10 228 Pfam PF00072 Response regulator receiver domain 7 115 2.5E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_29250 f7f5146909652ceb86082b0e95c97b10 228 Gene3D G3DSA:3.40.50.2300 1 126 1.4E-37 T 13-10-2018 RAM_29250 f7f5146909652ceb86082b0e95c97b10 228 SMART SM00448 5 115 1.3E-40 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_29250 f7f5146909652ceb86082b0e95c97b10 228 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 224 1.3E-28 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_29250 f7f5146909652ceb86082b0e95c97b10 228 SMART SM00862 148 224 4.0E-29 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAM_24045 98c90826d41baa61f21491494763376c 263 SUPERFAMILY SSF51695 12 251 4.97E-56 T 13-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 RAM_24045 98c90826d41baa61f21491494763376c 263 Gene3D G3DSA:3.20.20.190 13 256 5.9E-64 T 13-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 RAM_24045 98c90826d41baa61f21491494763376c 263 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 18 245 7.9E-34 T 13-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 RAM_26835 99d3179ee52a4180cd6ee9e67fda6033 208 Gene3D G3DSA:3.40.50.300 12 192 4.1E-16 T 13-10-2018 RAM_26835 99d3179ee52a4180cd6ee9e67fda6033 208 SUPERFAMILY SSF52540 17 184 2.08E-18 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_26835 99d3179ee52a4180cd6ee9e67fda6033 208 Pfam PF03029 Conserved hypothetical ATP binding protein 21 186 2.4E-22 T 13-10-2018 IPR004130 GPN-loop GTPase RAM_18965 5066b7f8e26ebc1de6b3f576edb1a497 255 Pfam PF13560 Helix-turn-helix domain 3 53 5.2E-12 T 13-10-2018 RAM_18965 5066b7f8e26ebc1de6b3f576edb1a497 255 Gene3D G3DSA:3.30.450.180 79 246 1.0E-12 T 13-10-2018 RAM_18965 5066b7f8e26ebc1de6b3f576edb1a497 255 Gene3D G3DSA:1.10.260.40 3 49 3.0E-5 T 13-10-2018 RAM_18965 5066b7f8e26ebc1de6b3f576edb1a497 255 SUPERFAMILY SSF47413 6 47 9.76E-6 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_06085 e66244e253dca33b5b5f32de7ceb4267 242 Gene3D G3DSA:3.30.450.20 2 168 1.1E-16 T 13-10-2018 RAM_20540 f53a51963fefdfd75ef1a30cd78215ef 95 ProSitePatterns PS00012 Phosphopantetheine attachment site. 46 61 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RAM_20540 f53a51963fefdfd75ef1a30cd78215ef 95 Gene3D G3DSA:1.10.1200.10 19 94 2.2E-18 T 13-10-2018 IPR036736 ACP-like superfamily RAM_20540 f53a51963fefdfd75ef1a30cd78215ef 95 Pfam PF00550 Phosphopantetheine attachment site 23 89 6.5E-13 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_20540 f53a51963fefdfd75ef1a30cd78215ef 95 SMART SM00823 Phosphopantetheine attachment site 20 93 0.0018 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RAM_20540 f53a51963fefdfd75ef1a30cd78215ef 95 SUPERFAMILY SSF47336 22 92 1.01E-14 T 13-10-2018 IPR036736 ACP-like superfamily RAM_11300 40e5a1d1d55503d20075643bc32544b8 52 ProDom PD028237 MB1616 ML1221 CGL0073 RV1590/MT1625 16 51 1.0E-8 T 13-10-2018 RAM_00405 cef53d3b557ee90a124ccd57cad39082 216 SUPERFAMILY SSF51735 1 205 2.05E-39 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_00405 cef53d3b557ee90a124ccd57cad39082 216 Gene3D G3DSA:3.40.50.720 2 216 7.6E-49 T 13-10-2018 RAM_00405 cef53d3b557ee90a124ccd57cad39082 216 Pfam PF13460 NAD(P)H-binding 7 193 4.7E-45 T 13-10-2018 IPR016040 NAD(P)-binding domain RAM_23830 56a02e99cca1f8c479b4b3c5a0d12c30 253 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 3 174 9.7E-28 T 13-10-2018 IPR013830 SGNH hydrolase-type esterase domain RAM_23830 56a02e99cca1f8c479b4b3c5a0d12c30 253 SUPERFAMILY SSF52266 1 185 6.5E-38 T 13-10-2018 RAM_23830 56a02e99cca1f8c479b4b3c5a0d12c30 253 Gene3D G3DSA:3.40.50.1110 1 187 2.5E-29 T 13-10-2018 IPR036514 SGNH hydrolase superfamily RAM_39630 a25c1fdab4aa9e6bf67c259c94935a42 135 SMART SM00232 1 131 2.1E-25 T 13-10-2018 IPR000555 JAB1/MPN/MOV34 metalloenzyme domain GO:0005515 RAM_39630 a25c1fdab4aa9e6bf67c259c94935a42 135 Gene3D G3DSA:3.40.140.10 1 135 3.6E-34 T 13-10-2018 RAM_39630 a25c1fdab4aa9e6bf67c259c94935a42 135 Pfam PF14464 Prokaryotic homologs of the JAB domain 7 116 2.5E-26 T 13-10-2018 IPR028090 JAB domain, prokaryotic RAM_39630 a25c1fdab4aa9e6bf67c259c94935a42 135 SUPERFAMILY SSF102712 2 129 1.44E-25 T 13-10-2018 RAM_28800 89079730dbafe555a56b4b3ae1980f2e 223 Gene3D G3DSA:3.40.50.2020 35 219 3.3E-32 T 13-10-2018 RAM_28800 89079730dbafe555a56b4b3ae1980f2e 223 Pfam PF00156 Phosphoribosyl transferase domain 62 154 1.3E-12 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 RAM_28800 89079730dbafe555a56b4b3ae1980f2e 223 SUPERFAMILY SSF53271 40 193 2.23E-27 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like RAM_00290 cc4246e7141b757db739bb525634bf15 243 Gene3D G3DSA:2.40.10.10 23 99 2.7E-10 T 13-10-2018 RAM_00290 cc4246e7141b757db739bb525634bf15 243 SUPERFAMILY SSF50494 15 223 3.83E-32 T 13-10-2018 IPR009003 Peptidase S1, PA clan RAM_00290 cc4246e7141b757db739bb525634bf15 243 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 58 73 4.9E-10 T 13-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 RAM_00290 cc4246e7141b757db739bb525634bf15 243 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 115 129 4.9E-10 T 13-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 RAM_00290 cc4246e7141b757db739bb525634bf15 243 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 193 205 4.9E-10 T 13-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 RAM_00290 cc4246e7141b757db739bb525634bf15 243 SMART SM00020 22 234 1.3E-7 T 13-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 RAM_00290 cc4246e7141b757db739bb525634bf15 243 Gene3D G3DSA:2.40.10.10 113 242 4.1E-10 T 13-10-2018 RAM_00290 cc4246e7141b757db739bb525634bf15 243 Pfam PF00089 Trypsin 26 237 2.6E-21 T 13-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 RAM_43985 982de3b91ac5e8e97fce8eb9ecf53321 721 SUPERFAMILY SSF48208 299 708 1.7E-73 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_43985 982de3b91ac5e8e97fce8eb9ecf53321 721 Pfam PF00723 Glycosyl hydrolases family 15 300 700 2.1E-18 T 13-10-2018 IPR011613 GH15-like domain Reactome: R-HSA-70221 RAM_43985 982de3b91ac5e8e97fce8eb9ecf53321 721 SUPERFAMILY SSF74650 26 289 2.04E-66 T 13-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 RAM_43985 982de3b91ac5e8e97fce8eb9ecf53321 721 Gene3D G3DSA:2.70.98.10 21 287 4.3E-81 T 13-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 RAM_43985 982de3b91ac5e8e97fce8eb9ecf53321 721 Gene3D G3DSA:1.50.10.10 293 721 1.3E-153 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 RAM_43985 982de3b91ac5e8e97fce8eb9ecf53321 721 Pfam PF09137 Glucodextranase, domain N 28 286 1.5E-84 T 13-10-2018 IPR015220 Glucodextranase, N-terminal KEGG: 00500+3.2.1.3|MetaCyc: PWY-5941 RAM_46865 206a161c18af83e3a87a08c4ff8f98fe 325 Pfam PF02653 Branched-chain amino acid transport system / permease component 45 313 2.3E-36 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 RAM_09020 940350d74ba10c7b8207d3f5715a33ad 330 Pfam PF02470 MlaD protein 39 112 1.8E-12 T 13-10-2018 IPR003399 Mce/MlaD RAM_09020 940350d74ba10c7b8207d3f5715a33ad 330 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 90 106 1.3E-14 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_09020 940350d74ba10c7b8207d3f5715a33ad 330 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 28 48 1.3E-14 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_09020 940350d74ba10c7b8207d3f5715a33ad 330 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 177 195 1.3E-14 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_09020 940350d74ba10c7b8207d3f5715a33ad 330 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 128 152 1.3E-14 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_09020 940350d74ba10c7b8207d3f5715a33ad 330 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 246 265 1.3E-14 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_09020 940350d74ba10c7b8207d3f5715a33ad 330 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 297 316 1.3E-14 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_09020 940350d74ba10c7b8207d3f5715a33ad 330 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 12 291 3.6E-60 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_15240 ba1b2581bc078956328625f6a2c29228 221 SUPERFAMILY SSF46689 2 78 1.75E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_15240 ba1b2581bc078956328625f6a2c29228 221 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 14 27 5.5E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_15240 ba1b2581bc078956328625f6a2c29228 221 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 35 58 5.5E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_15240 ba1b2581bc078956328625f6a2c29228 221 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 59 5.0E-17 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_15240 ba1b2581bc078956328625f6a2c29228 221 Gene3D G3DSA:1.10.357.10 3 195 2.6E-27 T 13-10-2018 RAM_38450 c9894e0ea0147890672b16c2a93bc3ef 111 Pfam PF11338 Protein of unknown function (DUF3140) 13 101 1.7E-27 T 13-10-2018 IPR021487 Protein of unknown function DUF3140 RAM_22665 55be955724c8aa064e4d6c37efcee82b 509 SUPERFAMILY SSF52540 116 500 1.62E-89 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_22665 55be955724c8aa064e4d6c37efcee82b 509 SUPERFAMILY SSF160246 9 85 6.8E-12 T 13-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily RAM_22665 55be955724c8aa064e4d6c37efcee82b 509 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 10 86 2.0E-10 T 13-10-2018 IPR007831 General secretory system II, protein E, N-terminal RAM_22665 55be955724c8aa064e4d6c37efcee82b 509 Pfam PF00437 Type II/IV secretion system protein 129 394 4.3E-79 T 13-10-2018 IPR001482 Type II/IV secretion system protein RAM_22665 55be955724c8aa064e4d6c37efcee82b 509 Gene3D G3DSA:3.30.450.90 92 227 3.2E-45 T 13-10-2018 RAM_22665 55be955724c8aa064e4d6c37efcee82b 509 Gene3D G3DSA:3.30.300.160 9 85 2.0E-6 T 13-10-2018 RAM_22665 55be955724c8aa064e4d6c37efcee82b 509 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 322 336 - T 13-10-2018 IPR001482 Type II/IV secretion system protein RAM_22665 55be955724c8aa064e4d6c37efcee82b 509 Gene3D G3DSA:3.40.50.300 230 504 1.0E-99 T 13-10-2018 RAM_13415 bdd17e35b16c304e41766d31292aa34b 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 1 14 2.8E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_13415 bdd17e35b16c304e41766d31292aa34b 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 22 45 2.8E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_13415 bdd17e35b16c304e41766d31292aa34b 196 Gene3D G3DSA:1.10.357.10 1 172 4.7E-25 T 13-10-2018 RAM_13415 bdd17e35b16c304e41766d31292aa34b 196 SUPERFAMILY SSF46689 1 68 1.8E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_13415 bdd17e35b16c304e41766d31292aa34b 196 Pfam PF00440 Bacterial regulatory proteins, tetR family 2 47 7.0E-16 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_04210 b108a7f049e4789d7a37ee48a37552b9 52 SUPERFAMILY SSF50118 1 50 1.5E-19 T 13-10-2018 RAM_04210 b108a7f049e4789d7a37ee48a37552b9 52 Gene3D G3DSA:2.30.30.440 1 52 2.8E-22 T 13-10-2018 RAM_04210 b108a7f049e4789d7a37ee48a37552b9 52 Pfam PF08940 Domain of unknown function (DUF1918) 1 47 5.3E-24 T 13-10-2018 IPR015035 Domain of unknown function DUF1918 RAM_38170 1d87a23f59ff4b4224fc65bca5212c29 266 Gene3D G3DSA:3.40.50.1820 2 264 5.2E-75 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_38170 1d87a23f59ff4b4224fc65bca5212c29 266 Pfam PF12697 Alpha/beta hydrolase family 20 258 9.4E-23 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_38170 1d87a23f59ff4b4224fc65bca5212c29 266 PRINTS PR00111 Alpha/beta hydrolase fold signature 43 58 2.4E-9 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_38170 1d87a23f59ff4b4224fc65bca5212c29 266 PRINTS PR00111 Alpha/beta hydrolase fold signature 209 223 2.4E-9 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_38170 1d87a23f59ff4b4224fc65bca5212c29 266 PRINTS PR00111 Alpha/beta hydrolase fold signature 91 104 2.4E-9 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_38170 1d87a23f59ff4b4224fc65bca5212c29 266 PRINTS PR00111 Alpha/beta hydrolase fold signature 105 118 2.4E-9 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_38170 1d87a23f59ff4b4224fc65bca5212c29 266 SUPERFAMILY SSF53474 8 264 5.59E-58 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_07655 83a9b8d37374a968e0075c206d09725d 243 Pfam PF01061 ABC-2 type transporter 8 200 5.4E-15 T 13-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 RAM_07655 83a9b8d37374a968e0075c206d09725d 243 PIRSF PIRSF006648 3 241 1.5E-18 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 RAM_17885 de1dea18993b11b0d12c6d65af0cdc94 234 Pfam PF03358 NADPH-dependent FMN reductase 8 160 8.5E-15 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 RAM_17885 de1dea18993b11b0d12c6d65af0cdc94 234 Gene3D G3DSA:3.40.50.360 8 167 2.0E-14 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RAM_17885 de1dea18993b11b0d12c6d65af0cdc94 234 SUPERFAMILY SSF52218 8 233 9.98E-33 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RAM_21470 a775c4aef2e7f014de58af0590ae3c80 196 SMART SM00530 10 65 2.4E-11 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_21470 a775c4aef2e7f014de58af0590ae3c80 196 Pfam PF13560 Helix-turn-helix domain 7 63 8.0E-13 T 13-10-2018 RAM_21470 a775c4aef2e7f014de58af0590ae3c80 196 Gene3D G3DSA:1.10.260.40 5 70 2.3E-16 T 13-10-2018 RAM_21470 a775c4aef2e7f014de58af0590ae3c80 196 Pfam PF07883 Cupin domain 110 177 1.3E-14 T 13-10-2018 IPR013096 Cupin 2, conserved barrel RAM_21470 a775c4aef2e7f014de58af0590ae3c80 196 SUPERFAMILY SSF47413 2 71 1.02E-15 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_21470 a775c4aef2e7f014de58af0590ae3c80 196 Gene3D G3DSA:2.60.120.10 93 186 2.8E-21 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_21470 a775c4aef2e7f014de58af0590ae3c80 196 SUPERFAMILY SSF51182 58 179 3.2E-28 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RAM_44645 7163abde031dd87691c10e661e8daa1e 163 Pfam PF00484 Carbonic anhydrase 32 130 4.6E-11 T 13-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RAM_44645 7163abde031dd87691c10e661e8daa1e 163 Gene3D G3DSA:3.40.1050.10 1 163 2.9E-53 T 13-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 RAM_44645 7163abde031dd87691c10e661e8daa1e 163 SMART SM00947 24 163 2.1E-24 T 13-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RAM_44645 7163abde031dd87691c10e661e8daa1e 163 SUPERFAMILY SSF53056 24 162 8.63E-31 T 13-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 RAM_33470 5d4a647b95a779fc294f2dc0419cd958 79 Gene3D G3DSA:3.40.50.720 1 79 5.9E-10 T 13-10-2018 RAM_03095 5be4e221f8153a1cf5b3e7787799dc8d 342 Pfam PF02470 MlaD protein 38 110 5.4E-16 T 13-10-2018 IPR003399 Mce/MlaD RAM_03095 5be4e221f8153a1cf5b3e7787799dc8d 342 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 10 295 2.8E-72 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_44810 a9bce191007fa0ed99e126c1aa5a9f70 116 Gene3D G3DSA:1.20.890.50 82 116 1.4E-16 T 13-10-2018 RAM_44810 a9bce191007fa0ed99e126c1aa5a9f70 116 Gene3D G3DSA:3.30.60.230 1 60 5.4E-29 T 13-10-2018 RAM_44810 a9bce191007fa0ed99e126c1aa5a9f70 116 ProDom PD026347 LSR2-LIKE LSR2 ANTIGEN IMMUNE PRECURSOR RESPONSE SIGNAL PLASMID LYSYL GP61 1 114 6.0E-30 T 13-10-2018 IPR024412 Lsr2 RAM_44810 a9bce191007fa0ed99e126c1aa5a9f70 116 Pfam PF11774 Lsr2 1 114 1.6E-44 T 13-10-2018 IPR024412 Lsr2 RAM_16085 60da7d0edb6606ca343f285613f2fa2a 527 SUPERFAMILY SSF53822 106 499 2.06E-14 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_16085 60da7d0edb6606ca343f285613f2fa2a 527 Gene3D G3DSA:3.40.50.2300 100 293 5.9E-13 T 13-10-2018 RAM_33365 2933ec550450717c53ea184de919431b 223 Gene3D G3DSA:3.40.50.12740 2 220 2.3E-73 T 13-10-2018 RAM_33365 2933ec550450717c53ea184de919431b 223 SUPERFAMILY SSF46894 154 220 1.94E-22 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_33365 2933ec550450717c53ea184de919431b 223 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 160 174 1.3E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_33365 2933ec550450717c53ea184de919431b 223 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 174 190 1.3E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_33365 2933ec550450717c53ea184de919431b 223 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 190 202 1.3E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_33365 2933ec550450717c53ea184de919431b 223 Pfam PF00196 Bacterial regulatory proteins, luxR family 159 214 5.0E-20 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_33365 2933ec550450717c53ea184de919431b 223 ProSitePatterns PS00622 LuxR-type HTH domain signature. 174 201 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_33365 2933ec550450717c53ea184de919431b 223 SMART SM00448 2 115 9.9E-34 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_33365 2933ec550450717c53ea184de919431b 223 Pfam PF00072 Response regulator receiver domain 4 116 5.0E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RAM_33365 2933ec550450717c53ea184de919431b 223 SUPERFAMILY SSF52172 3 134 4.41E-36 T 13-10-2018 IPR011006 CheY-like superfamily RAM_33365 2933ec550450717c53ea184de919431b 223 SMART SM00421 157 214 9.6E-26 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_12195 dbc8b48c288413de9a4e538ee7d882fb 248 SUPERFAMILY SSF47240 12 193 2.92E-21 T 13-10-2018 IPR009078 Ferritin-like superfamily RAM_12195 dbc8b48c288413de9a4e538ee7d882fb 248 Gene3D G3DSA:1.20.1260.10 46 231 1.1E-10 T 13-10-2018 IPR012347 Ferritin-like RAM_28320 a1dcc7cdd8553f98345a0a354c0d7807 144 Gene3D G3DSA:3.10.450.50 11 126 4.7E-9 T 13-10-2018 RAM_32070 2a1721195745645ff70e9e8a6d85deb9 503 Pfam PF01098 Cell cycle protein 45 398 2.8E-100 T 13-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RAM_32070 2a1721195745645ff70e9e8a6d85deb9 503 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 356 380 - T 13-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RAM_32070 2a1721195745645ff70e9e8a6d85deb9 503 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 44 397 3.3E-103 T 13-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RAM_04300 c2939356e90ec5756b5f0892bdab73c9 336 Pfam PF03631 Virulence factor BrkB 35 288 8.4E-47 T 13-10-2018 IPR017039 Virulence factor BrkB RAM_04300 c2939356e90ec5756b5f0892bdab73c9 336 TIGRFAM TIGR00766 TIGR00766: inner membrane protein YhjD 21 287 1.3E-66 T 13-10-2018 IPR005274 Inner membrane protein YhjD RAM_34690 c23fb1931cabad4084800f373f2d2f81 237 SUPERFAMILY SSF81606 10 220 1.7E-23 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_34690 c23fb1931cabad4084800f373f2d2f81 237 SMART SM00332 2 220 0.0021 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_34690 c23fb1931cabad4084800f373f2d2f81 237 Gene3D G3DSA:3.60.40.10 33 220 3.3E-24 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_06855 f6b2eec2c8eeffd8f2babfadc8ae9c78 48 Gene3D G3DSA:1.10.10.10 1 47 6.0E-11 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_06855 f6b2eec2c8eeffd8f2babfadc8ae9c78 48 SUPERFAMILY SSF46894 2 35 2.82E-9 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_06855 f6b2eec2c8eeffd8f2babfadc8ae9c78 48 Pfam PF00196 Bacterial regulatory proteins, luxR family 2 30 2.1E-7 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_30860 7320380650551144b5b2cdffe6eb1fe2 235 Gene3D G3DSA:3.40.50.12500 1 233 2.6E-74 T 13-10-2018 RAM_30860 7320380650551144b5b2cdffe6eb1fe2 235 Pfam PF01177 Asp/Glu/Hydantoin racemase 67 205 1.1E-6 T 13-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RAM_36415 372bf6bdd584343f765466c2bf3dd331 221 Pfam PF08666 SAF domain 64 121 2.6E-5 T 13-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 RAM_47425 a9824bc06de164cdf3e74dae1f0a34c1 271 SUPERFAMILY SSF55729 31 268 5.33E-18 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_47425 a9824bc06de164cdf3e74dae1f0a34c1 271 Pfam PF08445 FR47-like protein 208 261 3.0E-7 T 13-10-2018 IPR013653 FR47-like GO:0016747 RAM_47425 a9824bc06de164cdf3e74dae1f0a34c1 271 Gene3D G3DSA:3.40.630.30 24 268 2.1E-21 T 13-10-2018 RAM_27400 625d1a73d4da2a22165dab4b2c1f2f73 167 Gene3D G3DSA:1.10.357.10 1 158 5.7E-28 T 13-10-2018 RAM_27400 625d1a73d4da2a22165dab4b2c1f2f73 167 Pfam PF00440 Bacterial regulatory proteins, tetR family 1 29 8.1E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_27400 625d1a73d4da2a22165dab4b2c1f2f73 167 SUPERFAMILY SSF48498 57 156 2.22E-11 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_27400 625d1a73d4da2a22165dab4b2c1f2f73 167 SUPERFAMILY SSF46689 1 47 1.54E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_28970 f70819ee6d1d9f19905a5c4ae292b177 143 ProSitePatterns PS01081 TetR-type HTH domain signature. 5 36 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RAM_28970 f70819ee6d1d9f19905a5c4ae292b177 143 Pfam PF00440 Bacterial regulatory proteins, tetR family 3 39 2.8E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_28970 f70819ee6d1d9f19905a5c4ae292b177 143 SUPERFAMILY SSF46689 2 45 6.16E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_28970 f70819ee6d1d9f19905a5c4ae292b177 143 Gene3D G3DSA:1.10.357.10 1 84 3.3E-10 T 13-10-2018 RAM_17065 486bd4dec69b4162350ada588ff9db6d 211 Pfam PF06197 Protein of unknown function (DUF998) 16 200 2.6E-19 T 13-10-2018 IPR009339 Protein of unknown function DUF998 RAM_00610 fd2ed1da0085d06651a7537b2e4fbde3 803 Pfam PF00534 Glycosyl transferases group 1 576 741 3.7E-13 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 RAM_00610 fd2ed1da0085d06651a7537b2e4fbde3 803 Gene3D G3DSA:3.40.50.2000 559 761 5.5E-37 T 13-10-2018 RAM_00610 fd2ed1da0085d06651a7537b2e4fbde3 803 SUPERFAMILY SSF53756 503 758 3.86E-33 T 13-10-2018 RAM_09870 06141570c62cc6ab888d56cfc9696e56 185 SUPERFAMILY SSF46689 2 67 6.16E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_09870 06141570c62cc6ab888d56cfc9696e56 185 SUPERFAMILY SSF48498 71 174 1.45E-8 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_09870 06141570c62cc6ab888d56cfc9696e56 185 Gene3D G3DSA:1.10.357.10 1 179 1.1E-26 T 13-10-2018 RAM_09870 06141570c62cc6ab888d56cfc9696e56 185 Pfam PF00440 Bacterial regulatory proteins, tetR family 2 47 9.0E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_19035 026c9aa1f417ce4d959720b4db9ebd07 301 SUPERFAMILY SSF53474 24 106 8.78E-13 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_19035 026c9aa1f417ce4d959720b4db9ebd07 301 Pfam PF10503 Esterase PHB depolymerase 47 246 6.3E-25 T 13-10-2018 IPR010126 Esterase, PHB depolymerase GO:0005576|GO:0016787 RAM_19035 026c9aa1f417ce4d959720b4db9ebd07 301 Gene3D G3DSA:3.40.50.1820 18 276 7.9E-53 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_19035 026c9aa1f417ce4d959720b4db9ebd07 301 TIGRFAM TIGR01840 esterase_phb: esterase, PHB depolymerase family 45 252 3.2E-46 T 13-10-2018 IPR010126 Esterase, PHB depolymerase GO:0005576|GO:0016787 RAM_19035 026c9aa1f417ce4d959720b4db9ebd07 301 SUPERFAMILY SSF53474 127 295 8.11E-43 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_40845 9dec739105ce587e7cdd6251185072fd 159 Pfam PF14124 Domain of unknown function (DUF4291) 11 89 1.1E-14 T 13-10-2018 IPR025633 Protein of unknown function DUF4291 RAM_40845 9dec739105ce587e7cdd6251185072fd 159 Pfam PF14124 Domain of unknown function (DUF4291) 89 156 7.2E-10 T 13-10-2018 IPR025633 Protein of unknown function DUF4291 RAM_17285 d3ff62c372573cb2a171ef7b6e52e97e 500 SUPERFAMILY SSF158472 238 287 3.27E-8 T 13-10-2018 RAM_17285 d3ff62c372573cb2a171ef7b6e52e97e 500 SUPERFAMILY SSF55073 315 495 6.12E-46 T 13-10-2018 IPR029787 Nucleotide cyclase RAM_17285 d3ff62c372573cb2a171ef7b6e52e97e 500 Pfam PF00672 HAMP domain 238 285 4.9E-9 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_17285 d3ff62c372573cb2a171ef7b6e52e97e 500 Gene3D G3DSA:3.30.70.1230 311 496 8.8E-48 T 13-10-2018 IPR029787 Nucleotide cyclase RAM_17285 d3ff62c372573cb2a171ef7b6e52e97e 500 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 320 490 1.5E-22 T 13-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 RAM_17285 d3ff62c372573cb2a171ef7b6e52e97e 500 SMART SM00044 286 476 1.0E-6 T 13-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 RAM_17285 d3ff62c372573cb2a171ef7b6e52e97e 500 SMART SM00304 238 290 4.6E-12 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_17285 d3ff62c372573cb2a171ef7b6e52e97e 500 Gene3D G3DSA:1.10.287.130 235 310 4.4E-8 T 13-10-2018 RAM_44545 d954c8c26da44e488345d66b943ff6e7 155 SUPERFAMILY SSF69765 1 152 2.62E-49 T 13-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 RAM_44545 d954c8c26da44e488345d66b943ff6e7 155 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2 152 3.0E-46 T 13-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 RAM_44545 d954c8c26da44e488345d66b943ff6e7 155 Gene3D G3DSA:3.30.1330.50 1 155 7.9E-57 T 13-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 RAM_44545 d954c8c26da44e488345d66b943ff6e7 155 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 35 50 - T 13-10-2018 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 RAM_44545 d954c8c26da44e488345d66b943ff6e7 155 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 1 153 30.093 T 13-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 RAM_44545 d954c8c26da44e488345d66b943ff6e7 155 Pfam PF02542 YgbB family 1 151 1.9E-47 T 13-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 RAM_17590 a8f62fb7771a8c791dccffffe06bfe8d 297 SUPERFAMILY SSF55729 35 170 2.09E-9 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_17590 a8f62fb7771a8c791dccffffe06bfe8d 297 Gene3D G3DSA:3.40.630.30 3 154 3.1E-9 T 13-10-2018 RAM_01585 2b7f1808139eb78fe82fe6779417bc86 309 SUPERFAMILY SSF52151 24 231 3.92E-32 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RAM_01585 2b7f1808139eb78fe82fe6779417bc86 309 Gene3D G3DSA:3.40.1090.10 12 125 2.4E-15 T 13-10-2018 RAM_01585 2b7f1808139eb78fe82fe6779417bc86 309 Pfam PF01734 Patatin-like phospholipase 29 199 2.5E-17 T 13-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 RAM_44365 eb63ce496d24bdc5e59e0c2a82e22e4e 116 Gene3D G3DSA:3.30.70.1060 1 116 5.7E-23 T 13-10-2018 RAM_44365 eb63ce496d24bdc5e59e0c2a82e22e4e 116 SUPERFAMILY SSF54909 2 115 4.29E-22 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_44365 eb63ce496d24bdc5e59e0c2a82e22e4e 116 Pfam PF03795 YCII-related domain 2 114 8.4E-18 T 13-10-2018 IPR005545 YCII-related RAM_13950 f022d1949cca14741503c14577ee5a69 162 Gene3D G3DSA:1.10.10.1930 75 162 1.3E-33 T 13-10-2018 IPR038099 BldD-like, C-terminal domain superfamily RAM_13950 f022d1949cca14741503c14577ee5a69 162 SMART SM00530 11 68 1.3E-5 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_13950 f022d1949cca14741503c14577ee5a69 162 Gene3D G3DSA:1.10.260.40 1 70 1.6E-31 T 13-10-2018 RAM_13950 f022d1949cca14741503c14577ee5a69 162 Pfam PF01381 Helix-turn-helix 13 68 1.8E-8 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_13950 f022d1949cca14741503c14577ee5a69 162 SUPERFAMILY SSF47413 4 71 1.38E-8 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_21980 40a3c6833efe457555f7b2e6ccd15989 372 Gene3D G3DSA:1.10.10.2840 240 363 2.6E-19 T 13-10-2018 RAM_21980 40a3c6833efe457555f7b2e6ccd15989 372 Pfam PF13556 PucR C-terminal helix-turn-helix domain 304 349 8.1E-15 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain RAM_40355 adfcb864d3b54ae03ad4b9b13178f7ad 138 SUPERFAMILY SSF54593 4 137 2.31E-12 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_29600 96248d99c3eee667aedefaac74db42fd 377 Gene3D G3DSA:1.10.10.2600 78 275 1.6E-8 T 13-10-2018 IPR038109 DNA-binding recombinase domain superfamily RAM_29600 96248d99c3eee667aedefaac74db42fd 377 Pfam PF07508 Recombinase 130 251 5.6E-18 T 13-10-2018 IPR011109 DNA-binding recombinase domain GO:0000150|GO:0003677 RAM_25955 bd6586e035ea3e984a6e0d0b9ea87846 324 Pfam PF02653 Branched-chain amino acid transport system / permease component 43 305 7.7E-42 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 RAM_40605 d9dc5156b2892e8bafccce0d82362669 401 Pfam PF06772 Bacterial low temperature requirement A protein (LtrA) 16 381 1.7E-97 T 13-10-2018 IPR010640 Low temperature requirement A RAM_24475 f825205807048a369b6c3492edf0b40c 131 SUPERFAMILY SSF54427 18 118 6.79E-13 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_24475 f825205807048a369b6c3492edf0b40c 131 Gene3D G3DSA:3.10.450.50 18 124 1.8E-16 T 13-10-2018 RAM_24475 f825205807048a369b6c3492edf0b40c 131 Pfam PF12680 SnoaL-like domain 22 116 2.2E-10 T 13-10-2018 IPR037401 SnoaL-like domain RAM_25855 535ed3ed0a5f8383474285069ebd6835 494 SUPERFAMILY SSF47384 215 293 7.65E-14 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RAM_25855 535ed3ed0a5f8383474285069ebd6835 494 SMART SM00388 232 298 4.7E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_25855 535ed3ed0a5f8383474285069ebd6835 494 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 345 414 1.2E-7 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_25855 535ed3ed0a5f8383474285069ebd6835 494 SUPERFAMILY SSF55874 288 411 3.41E-21 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_25855 535ed3ed0a5f8383474285069ebd6835 494 Gene3D G3DSA:1.10.287.130 182 298 1.7E-24 T 13-10-2018 RAM_25855 535ed3ed0a5f8383474285069ebd6835 494 Gene3D G3DSA:3.30.565.10 307 426 1.0E-19 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_25855 535ed3ed0a5f8383474285069ebd6835 494 SMART SM00304 178 231 4.2E-5 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_25855 535ed3ed0a5f8383474285069ebd6835 494 SMART SM00387 343 477 3.9E-8 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_25855 535ed3ed0a5f8383474285069ebd6835 494 Pfam PF00512 His Kinase A (phospho-acceptor) domain 233 296 4.6E-13 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAM_06600 64f8e798fbcec3d0c1d2d6142e1e0b2f 195 Pfam PF03358 NADPH-dependent FMN reductase 1 150 3.8E-34 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 RAM_06600 64f8e798fbcec3d0c1d2d6142e1e0b2f 195 Gene3D G3DSA:3.40.50.360 1 174 2.5E-46 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RAM_06600 64f8e798fbcec3d0c1d2d6142e1e0b2f 195 SUPERFAMILY SSF52218 1 158 4.51E-26 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RAM_06600 64f8e798fbcec3d0c1d2d6142e1e0b2f 195 TIGRFAM TIGR04037 LLM_duo_CE1759: LLM-partnered FMN reductase, CE1759 family 3 191 1.2E-78 T 13-10-2018 IPR023932 Uncharacterised protein family, CE1759 RAM_35675 71162ac7dce2aecd3b79897cb4442ed8 327 SUPERFAMILY SSF51679 1 304 1.21E-42 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_35675 71162ac7dce2aecd3b79897cb4442ed8 327 TIGRFAM TIGR03841 F420_Rv3093c: probable F420-dependent oxidoreductase, Rv3093c family 7 303 1.2E-108 T 13-10-2018 IPR022526 F420-dependent oxidoreductase, Rv3093c RAM_35675 71162ac7dce2aecd3b79897cb4442ed8 327 Gene3D G3DSA:3.20.20.30 3 319 2.0E-47 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_35675 71162ac7dce2aecd3b79897cb4442ed8 327 Pfam PF00296 Luciferase-like monooxygenase 14 297 8.9E-38 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_38220 778294a813331bc8c3985a10b822207a 66 Gene3D G3DSA:3.30.70.20 1 65 1.4E-19 T 13-10-2018 RAM_38220 778294a813331bc8c3985a10b822207a 66 SUPERFAMILY SSF54862 2 63 3.12E-14 T 13-10-2018 RAM_38220 778294a813331bc8c3985a10b822207a 66 PRINTS PR00352 3Fe-4S ferredoxin signature 5 16 8.7E-7 T 13-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 RAM_38220 778294a813331bc8c3985a10b822207a 66 PRINTS PR00352 3Fe-4S ferredoxin signature 48 60 8.7E-7 T 13-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 RAM_38220 778294a813331bc8c3985a10b822207a 66 PRINTS PR00352 3Fe-4S ferredoxin signature 16 26 8.7E-7 T 13-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 RAM_38220 778294a813331bc8c3985a10b822207a 66 Pfam PF13370 4Fe-4S single cluster domain of Ferredoxin I 5 62 5.1E-13 T 13-10-2018 RAM_09075 d9c8d8c6a10b1726f1ca9f1f6d1294d8 186 Gene3D G3DSA:3.40.50.150 1 183 5.5E-58 T 13-10-2018 RAM_09075 d9c8d8c6a10b1726f1ca9f1f6d1294d8 186 SUPERFAMILY SSF53335 2 179 4.72E-42 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_09075 d9c8d8c6a10b1726f1ca9f1f6d1294d8 186 PIRSF PIRSF004553 1 184 8.0E-55 T 13-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 RAM_09075 d9c8d8c6a10b1726f1ca9f1f6d1294d8 186 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 115 121 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RAM_09075 d9c8d8c6a10b1726f1ca9f1f6d1294d8 186 Pfam PF03602 Conserved hypothetical protein 95 2 177 8.2E-51 T 13-10-2018 RAM_09075 d9c8d8c6a10b1726f1ca9f1f6d1294d8 186 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 3 178 1.4E-44 T 13-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 RAM_01540 77242692cde0979c95dd99469eed995b 201 SUPERFAMILY SSF88946 24 124 2.35E-18 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_01540 77242692cde0979c95dd99469eed995b 201 SUPERFAMILY SSF88659 126 194 5.89E-6 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_01540 77242692cde0979c95dd99469eed995b 201 Gene3D G3DSA:1.10.1740.10 19 105 3.0E-15 T 13-10-2018 RAM_01540 77242692cde0979c95dd99469eed995b 201 Gene3D G3DSA:1.10.10.10 112 199 3.4E-10 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_01540 77242692cde0979c95dd99469eed995b 201 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 36 192 2.3E-20 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_01540 77242692cde0979c95dd99469eed995b 201 Pfam PF04542 Sigma-70 region 2 40 99 1.6E-9 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_32455 7eea8cca4404d8f75e40019ebe8c884d 338 SUPERFAMILY SSF53335 123 304 8.83E-15 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_32455 7eea8cca4404d8f75e40019ebe8c884d 338 Pfam PF01170 Putative RNA methylase family UPF0020 131 256 2.1E-6 T 13-10-2018 IPR000241 Putative RNA methylase domain RAM_20535 208835fbc70f8a4cb54fd3f31f19e3c5 560 Gene3D G3DSA:3.50.50.60 174 319 1.7E-19 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_20535 208835fbc70f8a4cb54fd3f31f19e3c5 560 Gene3D G3DSA:3.50.50.60 11 102 1.3E-18 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_20535 208835fbc70f8a4cb54fd3f31f19e3c5 560 Pfam PF01593 Flavin containing amine oxidoreductase 20 281 2.3E-14 T 13-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 RAM_20535 208835fbc70f8a4cb54fd3f31f19e3c5 560 SUPERFAMILY SSF51905 10 495 1.01E-45 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_00195 3043c836f9d85a556f4acdde775d8f2b 352 Pfam PF04203 Sortase family 156 330 3.1E-27 T 13-10-2018 IPR005754 Sortase family RAM_00195 3043c836f9d85a556f4acdde775d8f2b 352 SUPERFAMILY SSF63817 134 238 1.02E-21 T 13-10-2018 IPR023365 Sortase domain superfamily RAM_05915 fa2bdb58c4aeb00aade6a0f9271c2e1f 296 Pfam PF03186 CobD/Cbib protein 10 270 5.8E-42 T 13-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 RAM_05915 fa2bdb58c4aeb00aade6a0f9271c2e1f 296 Hamap MF_00024 Cobalamin biosynthesis protein CbiB [cbiB]. 1 292 52.114 T 13-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 RAM_03785 0f65edb4698d85fcf4f4c1f060ff5823 359 Gene3D G3DSA:3.40.50.1820 42 343 1.7E-52 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_03785 0f65edb4698d85fcf4f4c1f060ff5823 359 Pfam PF12697 Alpha/beta hydrolase family 74 332 1.0E-21 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_03785 0f65edb4698d85fcf4f4c1f060ff5823 359 SUPERFAMILY SSF53474 39 340 6.8E-51 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_13325 58593a910d7ac66d24132150be294ed0 314 PRINTS PR00116 Arginase signature 233 262 9.5E-14 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 RAM_13325 58593a910d7ac66d24132150be294ed0 314 PRINTS PR00116 Arginase signature 120 135 9.5E-14 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 RAM_13325 58593a910d7ac66d24132150be294ed0 314 Pfam PF00491 Arginase family 33 304 5.9E-93 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 RAM_13325 58593a910d7ac66d24132150be294ed0 314 ProSitePatterns PS01053 Arginase family signature. 236 257 - T 13-10-2018 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 RAM_13325 58593a910d7ac66d24132150be294ed0 314 PIRSF PIRSF036979 10 310 7.9E-109 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 RAM_13325 58593a910d7ac66d24132150be294ed0 314 TIGRFAM TIGR01230 agmatinase: agmatinase 30 305 7.1E-73 T 13-10-2018 IPR005925 Agmatinase-related KEGG: 00330+3.5.3.11|MetaCyc: PWY-40|MetaCyc: PWY-6305|Reactome: R-HSA-351143 RAM_13325 58593a910d7ac66d24132150be294ed0 314 Gene3D G3DSA:3.40.800.10 3 311 1.4E-115 T 13-10-2018 RAM_13325 58593a910d7ac66d24132150be294ed0 314 SUPERFAMILY SSF52768 13 309 5.22E-102 T 13-10-2018 IPR023696 Ureohydrolase domain superfamily RAM_14315 49ed2c43ec4319fffcbd716aaacead3d 186 SUPERFAMILY SSF54534 53 179 3.14E-28 T 13-10-2018 RAM_14315 49ed2c43ec4319fffcbd716aaacead3d 186 Gene3D G3DSA:3.10.50.40 76 184 3.3E-30 T 13-10-2018 RAM_14315 49ed2c43ec4319fffcbd716aaacead3d 186 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 94 176 3.0E-21 T 13-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain RAM_22505 4de38a92b91e4c4491bef3be1cef28a9 189 SUPERFAMILY SSF46689 10 83 2.21E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_22505 4de38a92b91e4c4491bef3be1cef28a9 189 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 64 2.3E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_22505 4de38a92b91e4c4491bef3be1cef28a9 189 Gene3D G3DSA:1.10.357.10 3 185 3.2E-21 T 13-10-2018 RAM_43615 5faa7935d667498b971d90c4fc3e9324 874 Gene3D G3DSA:2.130.10.10 204 871 9.8E-261 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RAM_43615 5faa7935d667498b971d90c4fc3e9324 874 Pfam PF15899 BNR-Asp box repeat 345 358 0.074 T 13-10-2018 IPR002860 BNR repeat RAM_43615 5faa7935d667498b971d90c4fc3e9324 874 Gene3D G3DSA:2.130.10.10 214 583 9.8E-261 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RAM_43615 5faa7935d667498b971d90c4fc3e9324 874 SUPERFAMILY SSF50370 34 166 7.6E-27 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_43615 5faa7935d667498b971d90c4fc3e9324 874 Gene3D G3DSA:2.80.10.50 33 167 8.9E-27 T 13-10-2018 RAM_43615 5faa7935d667498b971d90c4fc3e9324 874 SUPERFAMILY SSF110296 204 561 4.45E-83 T 13-10-2018 RAM_43615 5faa7935d667498b971d90c4fc3e9324 874 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 117 170 4.2E-7 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_43615 5faa7935d667498b971d90c4fc3e9324 874 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 34 104 3.9E-13 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_43615 5faa7935d667498b971d90c4fc3e9324 874 SUPERFAMILY SSF110296 568 864 1.11E-38 T 13-10-2018 RAM_08810 c4c8ae83d433d130311b8250e039b2d5 246 SUPERFAMILY SSF143631 5 242 3.53E-59 T 13-10-2018 IPR003374 ApbE-like superfamily RAM_08810 c4c8ae83d433d130311b8250e039b2d5 246 Gene3D G3DSA:3.10.520.20 88 245 1.6E-46 T 13-10-2018 RAM_08810 c4c8ae83d433d130311b8250e039b2d5 246 Gene3D G3DSA:3.10.520.20 1 87 1.7E-10 T 13-10-2018 RAM_08810 c4c8ae83d433d130311b8250e039b2d5 246 Pfam PF02424 ApbE family 92 226 5.7E-37 T 13-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 RAM_08810 c4c8ae83d433d130311b8250e039b2d5 246 Pfam PF02424 ApbE family 9 86 5.2E-9 T 13-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 RAM_11860 16b904c454a5f37f4acf59d7cf44c747 170 Pfam PF04073 Aminoacyl-tRNA editing domain 34 151 6.9E-25 T 13-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 RAM_11860 16b904c454a5f37f4acf59d7cf44c747 170 SUPERFAMILY SSF55826 22 158 1.44E-28 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 RAM_11860 16b904c454a5f37f4acf59d7cf44c747 170 Gene3D G3DSA:3.90.960.10 5 166 2.6E-36 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 RAM_24905 cf85552c22556b931915b326009ef93e 264 SUPERFAMILY SSF56235 10 246 1.71E-39 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RAM_24905 cf85552c22556b931915b326009ef93e 264 Hamap MF_00289_B Proteasome subunit alpha [prcA]. 1 251 48.602 T 13-10-2018 IPR022296 Proteasome, alpha subunit, bacterial GO:0004298|GO:0019773|GO:0051603 RAM_24905 cf85552c22556b931915b326009ef93e 264 TIGRFAM TIGR03691 20S_bact_alpha: proteasome, alpha subunit 2 247 2.6E-105 T 13-10-2018 IPR022296 Proteasome, alpha subunit, bacterial GO:0004298|GO:0019773|GO:0051603 RAM_24905 cf85552c22556b931915b326009ef93e 264 Gene3D G3DSA:3.60.20.10 1 259 3.2E-64 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RAM_24905 cf85552c22556b931915b326009ef93e 264 Pfam PF00227 Proteasome subunit 25 188 2.7E-29 T 13-10-2018 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1234176|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-382556|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5678895|Reactome: R-HSA-5687128|Reactome: R-HSA-5689603|Reactome: R-HSA-5689880|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-8854050|Reactome: R-HSA-8939236|Reactome: R-HSA-8939902|Reactome: R-HSA-8941858|Reactome: R-HSA-8948751|Reactome: R-HSA-8951664|Reactome: R-HSA-9010553|Reactome: R-HSA-9020702|Reactome: R-HSA-9604323|Reactome: R-HSA-983168 RAM_01660 e05040e3c0fa8027325e6a4869fa3f4a 439 Gene3D G3DSA:3.90.550.10 31 264 7.4E-22 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_01660 e05040e3c0fa8027325e6a4869fa3f4a 439 SUPERFAMILY SSF53448 34 320 3.38E-24 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_01660 e05040e3c0fa8027325e6a4869fa3f4a 439 Pfam PF13641 Glycosyltransferase like family 2 34 283 5.8E-22 T 13-10-2018 RAM_46825 4cc5f69a233db4b6c8fbc8ff13c4a71d 273 SUPERFAMILY SSF49478 11 72 4.71E-6 T 13-10-2018 RAM_46825 4cc5f69a233db4b6c8fbc8ff13c4a71d 273 SMART SM00867 97 265 1.7E-52 T 13-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like RAM_46825 4cc5f69a233db4b6c8fbc8ff13c4a71d 273 SUPERFAMILY SSF101874 96 267 9.68E-47 T 13-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily RAM_46825 4cc5f69a233db4b6c8fbc8ff13c4a71d 273 Pfam PF04264 YceI-like domain 98 264 5.4E-34 T 13-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like RAM_46825 4cc5f69a233db4b6c8fbc8ff13c4a71d 273 Gene3D G3DSA:2.40.128.110 97 269 4.6E-45 T 13-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily RAM_03225 826ff670645b5761ee7d2b0f09d3cb81 255 SUPERFAMILY SSF102588 3 239 5.1E-50 T 13-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 RAM_03225 826ff670645b5761ee7d2b0f09d3cb81 255 Gene3D G3DSA:3.40.50.10320 2 255 9.3E-57 T 13-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 RAM_03225 826ff670645b5761ee7d2b0f09d3cb81 255 Pfam PF02585 GlcNAc-PI de-N-acetylase 7 144 1.3E-23 T 13-10-2018 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related Reactome: R-HSA-162710 RAM_37490 7d1eea6d0678e42b1b52869e5c3b2b96 331 Gene3D G3DSA:1.10.530.10 68 213 1.4E-16 T 13-10-2018 RAM_37490 7d1eea6d0678e42b1b52869e5c3b2b96 331 Pfam PF00877 NlpC/P60 family 223 318 6.4E-23 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain RAM_37490 7d1eea6d0678e42b1b52869e5c3b2b96 331 SUPERFAMILY SSF54001 205 319 2.26E-35 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily RAM_37490 7d1eea6d0678e42b1b52869e5c3b2b96 331 Gene3D G3DSA:3.90.1720.10 214 328 3.2E-34 T 13-10-2018 RAM_37490 7d1eea6d0678e42b1b52869e5c3b2b96 331 Pfam PF01464 Transglycosylase SLT domain 113 199 4.3E-7 T 13-10-2018 IPR008258 Transglycosylase SLT domain 1 RAM_37490 7d1eea6d0678e42b1b52869e5c3b2b96 331 SUPERFAMILY SSF53955 69 200 7.5E-19 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily RAM_08035 c99d97ac2621775e1dbdc0b44621ee5f 153 Gene3D G3DSA:1.20.1290.10 8 152 6.2E-42 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_08035 c99d97ac2621775e1dbdc0b44621ee5f 153 SUPERFAMILY SSF69118 9 148 7.1E-39 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_08035 c99d97ac2621775e1dbdc0b44621ee5f 153 Pfam PF02627 Carboxymuconolactone decarboxylase family 11 96 7.7E-18 T 13-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RAM_08035 c99d97ac2621775e1dbdc0b44621ee5f 153 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 32 78 2.5E-15 T 13-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RAM_13755 5033415578d4fd72e94a4fa71eada89a 242 Gene3D G3DSA:3.60.21.10 1 229 4.4E-45 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like RAM_13755 5033415578d4fd72e94a4fa71eada89a 242 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 2 184 1.1E-21 T 13-10-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 RAM_13755 5033415578d4fd72e94a4fa71eada89a 242 PIRSF PIRSF000883 1 223 1.3E-42 T 13-10-2018 IPR011152 Phosphoesterase MJ0912 RAM_13755 5033415578d4fd72e94a4fa71eada89a 242 SUPERFAMILY SSF56300 3 213 3.94E-42 T 13-10-2018 RAM_33505 1da51d01f7d30e623d844f775dda024a 203 Gene3D G3DSA:3.40.50.880 1 197 4.1E-62 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_33505 1da51d01f7d30e623d844f775dda024a 203 SUPERFAMILY SSF52317 6 187 6.02E-46 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_33505 1da51d01f7d30e623d844f775dda024a 203 Pfam PF01965 DJ-1/PfpI family 6 169 2.3E-23 T 13-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 RAM_39480 f9f6f5f5a472a55cca1e401dcf00270e 415 Pfam PF05977 Transmembrane secretion effector 23 398 9.2E-12 T 13-10-2018 IPR010290 Transmembrane secretion effector RAM_39480 f9f6f5f5a472a55cca1e401dcf00270e 415 Gene3D G3DSA:1.20.1250.20 248 412 2.3E-11 T 13-10-2018 RAM_39480 f9f6f5f5a472a55cca1e401dcf00270e 415 Gene3D G3DSA:1.20.1250.20 23 247 9.8E-13 T 13-10-2018 RAM_39480 f9f6f5f5a472a55cca1e401dcf00270e 415 SUPERFAMILY SSF103473 26 405 3.27E-31 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_39480 f9f6f5f5a472a55cca1e401dcf00270e 415 PRINTS PR01988 Putative bacilysin exporter bacE signature 31 53 8.5E-5 T 13-10-2018 IPR022324 Bacilysin exporter BacE, putative GO:0016020|GO:0042891 RAM_39480 f9f6f5f5a472a55cca1e401dcf00270e 415 PRINTS PR01988 Putative bacilysin exporter bacE signature 184 201 8.5E-5 T 13-10-2018 IPR022324 Bacilysin exporter BacE, putative GO:0016020|GO:0042891 RAM_39480 f9f6f5f5a472a55cca1e401dcf00270e 415 PRINTS PR01988 Putative bacilysin exporter bacE signature 157 178 8.5E-5 T 13-10-2018 IPR022324 Bacilysin exporter BacE, putative GO:0016020|GO:0042891 RAM_42900 c294ddd1efb8d1af3f197835843abceb 319 Gene3D G3DSA:3.90.920.30 18 285 1.1E-72 T 13-10-2018 RAM_05800 6bfa58ca375f892d59e66bd07ca687a3 323 Gene3D G3DSA:1.10.8.300 212 319 1.7E-30 T 13-10-2018 RAM_05800 6bfa58ca375f892d59e66bd07ca687a3 323 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 45 175 1.4E-64 T 13-10-2018 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 RAM_05800 6bfa58ca375f892d59e66bd07ca687a3 323 SUPERFAMILY SSF52540 12 299 8.46E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_05800 6bfa58ca375f892d59e66bd07ca687a3 323 Gene3D G3DSA:3.40.50.300 6 206 1.1E-49 T 13-10-2018 RAM_05800 6bfa58ca375f892d59e66bd07ca687a3 323 PIRSF PIRSF002849 1 323 1.6E-127 T 13-10-2018 RAM_17060 3830113d887ae9479244e92021be8b03 434 PRINTS PR00359 B-class P450 signature 167 183 3.2E-42 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_17060 3830113d887ae9479244e92021be8b03 434 PRINTS PR00359 B-class P450 signature 375 384 3.2E-42 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_17060 3830113d887ae9479244e92021be8b03 434 PRINTS PR00359 B-class P450 signature 184 199 3.2E-42 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_17060 3830113d887ae9479244e92021be8b03 434 PRINTS PR00359 B-class P450 signature 227 249 3.2E-42 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_17060 3830113d887ae9479244e92021be8b03 434 PRINTS PR00359 B-class P450 signature 121 132 3.2E-42 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_17060 3830113d887ae9479244e92021be8b03 434 PRINTS PR00359 B-class P450 signature 308 319 3.2E-42 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_17060 3830113d887ae9479244e92021be8b03 434 PRINTS PR00359 B-class P450 signature 325 352 3.2E-42 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_17060 3830113d887ae9479244e92021be8b03 434 PRINTS PR00359 B-class P450 signature 384 395 3.2E-42 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_17060 3830113d887ae9479244e92021be8b03 434 PRINTS PR00359 B-class P450 signature 353 368 3.2E-42 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_17060 3830113d887ae9479244e92021be8b03 434 SUPERFAMILY SSF48264 48 432 5.11E-82 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_17060 3830113d887ae9479244e92021be8b03 434 PRINTS PR00385 P450 superfamily signature 375 384 9.3E-7 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_17060 3830113d887ae9479244e92021be8b03 434 PRINTS PR00385 P450 superfamily signature 273 290 9.3E-7 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_17060 3830113d887ae9479244e92021be8b03 434 PRINTS PR00385 P450 superfamily signature 308 319 9.3E-7 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_17060 3830113d887ae9479244e92021be8b03 434 PRINTS PR00385 P450 superfamily signature 384 395 9.3E-7 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_17060 3830113d887ae9479244e92021be8b03 434 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 377 386 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RAM_17060 3830113d887ae9479244e92021be8b03 434 Gene3D G3DSA:1.10.630.10 28 434 4.7E-107 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_17060 3830113d887ae9479244e92021be8b03 434 Pfam PF00067 Cytochrome P450 227 405 4.5E-21 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_15850 e5d32d5184d4ca5da21d61d6ca6d20b4 142 Pfam PF07332 Putative Actinobacterial Holin-X, holin superfamily III 23 138 1.8E-33 T 13-10-2018 IPR009937 Putative Actinobacterial Holin-X, holin superfamily III RAM_34055 e542ce5c3c73c0d465e836fb89e1f524 111 Gene3D G3DSA:3.30.350.10 8 111 6.2E-31 T 13-10-2018 IPR036819 Subtilisin inhibitor-like superfamily GO:0004867 RAM_34055 e542ce5c3c73c0d465e836fb89e1f524 111 SUPERFAMILY SSF55399 12 111 9.55E-26 T 13-10-2018 IPR036819 Subtilisin inhibitor-like superfamily GO:0004867 RAM_34055 e542ce5c3c73c0d465e836fb89e1f524 111 ProDom PD004028 INHIBITOR PROTEASE SERINE DIRECT SEQUENCING SUBTILISIN PRECURSOR SIGNAL INHIBITOR-LIKE INHIBITOR 32 99 2.0E-14 T 13-10-2018 IPR023549 Subtilisin inhibitor GO:0004867 RAM_34055 e542ce5c3c73c0d465e836fb89e1f524 111 PRINTS PR00294 Streptomyces subtilisin inhibitor signature 9 35 1.2E-11 T 13-10-2018 IPR000691 Proteinase inhibitor I16, Streptomyces subtilisin-type inhibitor GO:0004867 RAM_34055 e542ce5c3c73c0d465e836fb89e1f524 111 PRINTS PR00294 Streptomyces subtilisin inhibitor signature 86 102 1.2E-11 T 13-10-2018 IPR000691 Proteinase inhibitor I16, Streptomyces subtilisin-type inhibitor GO:0004867 RAM_34055 e542ce5c3c73c0d465e836fb89e1f524 111 PRINTS PR00294 Streptomyces subtilisin inhibitor signature 35 62 1.2E-11 T 13-10-2018 IPR000691 Proteinase inhibitor I16, Streptomyces subtilisin-type inhibitor GO:0004867 RAM_34055 e542ce5c3c73c0d465e836fb89e1f524 111 Pfam PF00720 Subtilisin inhibitor-like 15 97 8.9E-25 T 13-10-2018 IPR023549 Subtilisin inhibitor GO:0004867 RAM_34055 e542ce5c3c73c0d465e836fb89e1f524 111 ProSitePatterns PS00999 Streptomyces subtilisin-type inhibitors signature. 35 52 - T 13-10-2018 IPR020054 Proteinase inhibitor I16, Streptomyces subtilisin-type inhibitor, conserved site GO:0004867 RAM_20750 93f729930bdc9b23921dac9df883ebb0 106 TIGRFAM TIGR03462 CarR_dom_SF: lycopene cyclase domain 6 96 4.4E-19 T 13-10-2018 IPR017825 Lycopene cyclase domain GO:0016872 KEGG: 00906+2.5.1.32+5.5.1.19|MetaCyc: PWY-5943|MetaCyc: PWY-5947|MetaCyc: PWY-6279|MetaCyc: PWY-7591|MetaCyc: PWY-7938|MetaCyc: PWY-7939|MetaCyc: PWY-7947 RAM_42990 b8779f2565a894c724928856e761c33c 326 SUPERFAMILY SSF161098 94 323 1.96E-15 T 13-10-2018 IPR035906 MetI-like superfamily RAM_42990 b8779f2565a894c724928856e761c33c 326 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 118 324 2.4E-41 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_42990 b8779f2565a894c724928856e761c33c 326 Gene3D G3DSA:1.10.3720.10 91 315 1.1E-17 T 13-10-2018 IPR035906 MetI-like superfamily RAM_34810 4ddb354466a0af3905c428b08846b874 180 TIGRFAM TIGR01382 PfpI: intracellular protease, PfpI family 10 176 1.0E-46 T 13-10-2018 IPR006286 Deglycase PfpI RAM_34810 4ddb354466a0af3905c428b08846b874 180 Gene3D G3DSA:3.40.50.880 1 180 2.1E-53 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_34810 4ddb354466a0af3905c428b08846b874 180 SUPERFAMILY SSF52317 7 178 7.64E-46 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_34810 4ddb354466a0af3905c428b08846b874 180 Pfam PF01965 DJ-1/PfpI family 8 176 3.8E-50 T 13-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 RAM_38855 504ee243f7cf0359cae921b40a48eb9c 106 SUPERFAMILY SSF50022 2 98 5.37E-28 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RAM_38855 504ee243f7cf0359cae921b40a48eb9c 106 Gene3D G3DSA:2.102.10.10 1 105 2.6E-32 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RAM_38855 504ee243f7cf0359cae921b40a48eb9c 106 Pfam PF00355 Rieske [2Fe-2S] domain 3 86 3.8E-16 T 13-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RAM_38650 fda3a6b88f7ce5322b2b7549d4dc6826 461 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 90 108 1.1E-5 T 13-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 RAM_38650 fda3a6b88f7ce5322b2b7549d4dc6826 461 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 69 88 1.1E-5 T 13-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 RAM_38650 fda3a6b88f7ce5322b2b7549d4dc6826 461 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 109 128 1.1E-5 T 13-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 RAM_38650 fda3a6b88f7ce5322b2b7549d4dc6826 461 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 43 62 1.1E-5 T 13-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 RAM_38650 fda3a6b88f7ce5322b2b7549d4dc6826 461 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 332 347 1.1E-5 T 13-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 RAM_38650 fda3a6b88f7ce5322b2b7549d4dc6826 461 SUPERFAMILY SSF53383 3 447 8.55E-104 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_38650 fda3a6b88f7ce5322b2b7549d4dc6826 461 Gene3D G3DSA:3.40.640.10 96 337 8.6E-93 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_38650 fda3a6b88f7ce5322b2b7549d4dc6826 461 Gene3D G3DSA:3.90.1150.170 19 438 8.6E-93 T 13-10-2018 RAM_38650 fda3a6b88f7ce5322b2b7549d4dc6826 461 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 42 388 1.3E-35 T 13-10-2018 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 RAM_24725 5fbc509dc32f7036483e5f388c913132 177 Gene3D G3DSA:1.20.1290.10 40 165 1.1E-28 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_24725 5fbc509dc32f7036483e5f388c913132 177 Pfam PF02627 Carboxymuconolactone decarboxylase family 27 72 5.7E-5 T 13-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RAM_24725 5fbc509dc32f7036483e5f388c913132 177 SUPERFAMILY SSF69118 9 163 7.42E-34 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_09350 3b20fd97b758fc333a2e8c1b943f553d 283 SUPERFAMILY SSF51556 2 274 1.62E-67 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_09350 3b20fd97b758fc333a2e8c1b943f553d 283 Pfam PF04909 Amidohydrolase 2 273 5.7E-40 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RAM_09350 3b20fd97b758fc333a2e8c1b943f553d 283 Gene3D G3DSA:3.20.20.140 1 278 9.1E-87 T 13-10-2018 RAM_33170 91bd1fab60325422df0973d4082d2670 552 Pfam PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus 69 236 3.2E-55 T 13-10-2018 IPR010941 Poly-beta-hydroxybutyrate polymerase, N-terminal domain GO:0042619 RAM_33170 91bd1fab60325422df0973d4082d2670 552 SUPERFAMILY SSF53474 191 478 8.39E-38 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_37005 8772d68a160b1095d6893168066a33dc 379 SUPERFAMILY SSF89796 151 363 2.09E-36 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily RAM_37005 8772d68a160b1095d6893168066a33dc 379 Gene3D G3DSA:3.40.50.10540 143 379 1.4E-39 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily RAM_37005 8772d68a160b1095d6893168066a33dc 379 SUPERFAMILY SSF89796 4 144 4.19E-6 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily RAM_37005 8772d68a160b1095d6893168066a33dc 379 Pfam PF02515 CoA-transferase family III 153 364 5.0E-35 T 13-10-2018 IPR003673 CoA-transferase family III GO:0003824 RAM_35030 26427909e9ddc41e9b3f261f54beabd1 139 SUPERFAMILY SSF54637 3 134 2.27E-23 T 13-10-2018 IPR029069 HotDog domain superfamily RAM_35030 26427909e9ddc41e9b3f261f54beabd1 139 Pfam PF13279 Thioesterase-like superfamily 10 118 7.2E-9 T 13-10-2018 RAM_35030 26427909e9ddc41e9b3f261f54beabd1 139 Gene3D G3DSA:3.10.129.10 1 138 7.9E-27 T 13-10-2018 RAM_14380 3dcf2b8fd3563d1f85b3c58846aae67a 482 TIGRFAM TIGR01980 sufB: FeS assembly protein SufB 26 473 7.4E-221 T 13-10-2018 IPR010231 SUF system FeS cluster assembly, SufB GO:0016226 RAM_14380 3dcf2b8fd3563d1f85b3c58846aae67a 482 SUPERFAMILY SSF101960 48 479 7.59E-141 T 13-10-2018 IPR037284 SUF system FeS cluster assembly, SufBD superfamily RAM_14380 3dcf2b8fd3563d1f85b3c58846aae67a 482 Pfam PF01458 Uncharacterized protein family (UPF0051) 228 453 1.0E-75 T 13-10-2018 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 RAM_34235 f6ce54f55382068fbc76cac041805082 349 Gene3D G3DSA:3.20.20.70 1 345 2.1E-109 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_34235 f6ce54f55382068fbc76cac041805082 349 Pfam PF03060 Nitronate monooxygenase 7 334 2.4E-86 T 13-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 RAM_34235 f6ce54f55382068fbc76cac041805082 349 SUPERFAMILY SSF51412 4 342 1.45E-54 T 13-10-2018 RAM_12350 59297da51da534744af7f6d6808e4d10 444 Pfam PF11887 Cholesterol uptake porter CUP1 of Mce4, putative 147 368 7.4E-70 T 13-10-2018 IPR024516 Mammalian cell entry, C-terminal RAM_12350 59297da51da534744af7f6d6808e4d10 444 Pfam PF02470 MlaD protein 43 116 1.7E-10 T 13-10-2018 IPR003399 Mce/MlaD RAM_12350 59297da51da534744af7f6d6808e4d10 444 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 15 298 2.1E-59 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_12325 9679d0bccb285f0135934124ef35c4af 63 SUPERFAMILY SSF54862 2 61 6.91E-9 T 13-10-2018 RAM_12325 9679d0bccb285f0135934124ef35c4af 63 Pfam PF13370 4Fe-4S single cluster domain of Ferredoxin I 5 58 4.0E-11 T 13-10-2018 RAM_12325 9679d0bccb285f0135934124ef35c4af 63 Gene3D G3DSA:3.30.70.20 1 62 4.1E-15 T 13-10-2018 RAM_04380 ab6eb417cc67cc2c7dddb44d8f913846 421 Pfam PF02653 Branched-chain amino acid transport system / permease component 59 348 1.3E-36 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 RAM_08410 c32e3bcebd0dba7b3981918133de482c 260 Gene3D G3DSA:3.40.630.30 28 166 2.2E-28 T 13-10-2018 RAM_08410 c32e3bcebd0dba7b3981918133de482c 260 SUPERFAMILY SSF55729 24 230 1.22E-40 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_08410 c32e3bcebd0dba7b3981918133de482c 260 Pfam PF13444 Acetyltransferase (GNAT) domain 41 142 6.9E-34 T 13-10-2018 RAM_44490 863bf59e846ebbfc4f72d50689a77ab1 480 Pfam PF00982 Glycosyltransferase family 20 13 474 4.0E-152 T 13-10-2018 IPR001830 Glycosyl transferase, family 20 GO:0003824|GO:0005992 KEGG: 00500+2.4.1.15 RAM_44490 863bf59e846ebbfc4f72d50689a77ab1 480 Gene3D G3DSA:3.40.50.2000 36 471 1.7E-164 T 13-10-2018 RAM_44490 863bf59e846ebbfc4f72d50689a77ab1 480 SUPERFAMILY SSF53756 12 474 3.23E-145 T 13-10-2018 RAM_44490 863bf59e846ebbfc4f72d50689a77ab1 480 Gene3D G3DSA:3.40.50.2000 252 460 1.7E-164 T 13-10-2018 RAM_41000 0a6b0765e960566343d21a51817afc22 340 SUPERFAMILY SSF52540 116 326 2.14E-39 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_41000 0a6b0765e960566343d21a51817afc22 340 Pfam PF03193 RsgA GTPase 99 266 1.3E-41 T 13-10-2018 IPR010914 RsgA GTPase domain GO:0003924|GO:0005525 RAM_41000 0a6b0765e960566343d21a51817afc22 340 Gene3D G3DSA:1.10.40.50 267 337 3.4E-6 T 13-10-2018 RAM_41000 0a6b0765e960566343d21a51817afc22 340 Gene3D G3DSA:3.40.50.300 102 266 9.4E-37 T 13-10-2018 RAM_41000 0a6b0765e960566343d21a51817afc22 340 Hamap MF_01820 Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 36 333 25.547 T 13-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 RAM_41000 0a6b0765e960566343d21a51817afc22 340 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 73 325 1.3E-43 T 13-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 RAM_01950 5bbecd7d0d9efe54e6efb24d74d3c93b 116 Gene3D G3DSA:3.30.70.1060 1 116 1.0E-29 T 13-10-2018 RAM_01950 5bbecd7d0d9efe54e6efb24d74d3c93b 116 SUPERFAMILY SSF54909 1 113 4.66E-21 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_01950 5bbecd7d0d9efe54e6efb24d74d3c93b 116 Pfam PF03795 YCII-related domain 1 113 3.8E-10 T 13-10-2018 IPR005545 YCII-related RAM_15825 30d5cf0ea2fa32e349be71bd82a1a6e5 290 Gene3D G3DSA:3.90.180.10 16 286 8.2E-70 T 13-10-2018 RAM_15825 30d5cf0ea2fa32e349be71bd82a1a6e5 290 SUPERFAMILY SSF51735 115 264 1.86E-31 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_15825 30d5cf0ea2fa32e349be71bd82a1a6e5 290 SMART SM00829 8 287 9.4E-18 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_15825 30d5cf0ea2fa32e349be71bd82a1a6e5 290 Pfam PF13602 Zinc-binding dehydrogenase 199 279 1.1E-10 T 13-10-2018 RAM_15825 30d5cf0ea2fa32e349be71bd82a1a6e5 290 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 87 8.6E-8 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_15825 30d5cf0ea2fa32e349be71bd82a1a6e5 290 Gene3D G3DSA:3.40.50.720 126 244 8.2E-70 T 13-10-2018 RAM_15825 30d5cf0ea2fa32e349be71bd82a1a6e5 290 SUPERFAMILY SSF50129 6 148 7.39E-31 T 13-10-2018 IPR011032 GroES-like superfamily RAM_46960 13f4eff577df7757609be240b8f83afd 395 Pfam PF07690 Major Facilitator Superfamily 9 302 2.4E-18 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_46960 13f4eff577df7757609be240b8f83afd 395 Gene3D G3DSA:1.20.1250.20 2 381 5.0E-32 T 13-10-2018 RAM_46960 13f4eff577df7757609be240b8f83afd 395 SUPERFAMILY SSF103473 6 380 1.29E-33 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_42250 c2e820266c69e53e9444d5338576aad7 294 Gene3D G3DSA:3.40.710.10 59 285 2.5E-27 T 13-10-2018 RAM_42250 c2e820266c69e53e9444d5338576aad7 294 Pfam PF13354 Beta-lactamase enzyme family 122 261 5.8E-6 T 13-10-2018 RAM_42250 c2e820266c69e53e9444d5338576aad7 294 SUPERFAMILY SSF56601 71 267 6.49E-20 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_01215 082fb57e946ffbca5bd709c95432d1cd 303 Pfam PF01061 ABC-2 type transporter 30 264 5.8E-23 T 13-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 RAM_39030 6016b3ada5fe641566526d3abb2d63e2 440 Pfam PF10009 Uncharacterized protein conserved in bacteria (DUF2252) 46 431 1.1E-75 T 13-10-2018 IPR018721 Protein of unknown function DUF2252 RAM_28925 c174789a3af22030f29049b4ab690e36 334 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 103 321 1.8E-15 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_28925 c174789a3af22030f29049b4ab690e36 334 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 25 325 9.3E-73 T 13-10-2018 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 RAM_28925 c174789a3af22030f29049b4ab690e36 334 SUPERFAMILY SSF161098 36 317 7.06E-30 T 13-10-2018 IPR035906 MetI-like superfamily RAM_32805 0f6286b0fce7251c2e64836fcc1abb57 208 Gene3D G3DSA:1.10.357.10 14 207 1.7E-19 T 13-10-2018 RAM_32805 0f6286b0fce7251c2e64836fcc1abb57 208 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 21 34 1.0E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_32805 0f6286b0fce7251c2e64836fcc1abb57 208 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 42 65 1.0E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_32805 0f6286b0fce7251c2e64836fcc1abb57 208 Pfam PF00440 Bacterial regulatory proteins, tetR family 21 67 9.2E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_32805 0f6286b0fce7251c2e64836fcc1abb57 208 SUPERFAMILY SSF46689 11 88 2.92E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_11730 049b9307abdcc38e96b007c4a9fa57f5 370 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 5 271 1.6E-46 T 13-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 RAM_11730 049b9307abdcc38e96b007c4a9fa57f5 370 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 10 279 15.657 T 13-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 RAM_11730 049b9307abdcc38e96b007c4a9fa57f5 370 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 15 273 2.7E-67 T 13-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 RAM_11730 049b9307abdcc38e96b007c4a9fa57f5 370 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 142 154 - T 13-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 RAM_09905 2d2251f2f458ec8780fef59c69e07383 592 ProSitePatterns PS00211 ABC transporters family signature. 493 507 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_09905 2d2251f2f458ec8780fef59c69e07383 592 Pfam PF00005 ABC transporter 372 521 5.6E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_09905 2d2251f2f458ec8780fef59c69e07383 592 SMART SM00382 381 567 2.1E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_09905 2d2251f2f458ec8780fef59c69e07383 592 Gene3D G3DSA:3.40.50.300 345 592 2.7E-91 T 13-10-2018 RAM_09905 2d2251f2f458ec8780fef59c69e07383 592 SUPERFAMILY SSF90123 16 341 6.8E-63 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RAM_09905 2d2251f2f458ec8780fef59c69e07383 592 SUPERFAMILY SSF52540 345 589 1.33E-89 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_09905 2d2251f2f458ec8780fef59c69e07383 592 Gene3D G3DSA:1.20.1560.10 4 341 2.9E-68 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RAM_09905 2d2251f2f458ec8780fef59c69e07383 592 Pfam PF00664 ABC transporter transmembrane region 36 306 1.9E-40 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 RAM_46045 96d053344c2853ee514df5a5cf57732a 343 PIRSF PIRSF015921 3 342 9.5E-77 T 13-10-2018 IPR012171 Fatty acid desaturase GO:0006629|GO:0016021|GO:0016491 RAM_46045 96d053344c2853ee514df5a5cf57732a 343 Pfam PF00487 Fatty acid desaturase 59 315 6.6E-38 T 13-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 RAM_28980 f414e2b007e3646cb1d127b7aeb3c257 78 Pfam PF13377 Periplasmic binding protein-like domain 2 70 1.7E-15 T 13-10-2018 RAM_28980 f414e2b007e3646cb1d127b7aeb3c257 78 Gene3D G3DSA:3.40.50.2300 1 72 1.5E-15 T 13-10-2018 RAM_28980 f414e2b007e3646cb1d127b7aeb3c257 78 SUPERFAMILY SSF53822 2 75 1.01E-17 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_18920 56cf83ef2e40cac33bce811e2fd92072 109 Gene3D G3DSA:1.20.1290.10 4 109 5.3E-35 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_18920 56cf83ef2e40cac33bce811e2fd92072 109 Pfam PF02627 Carboxymuconolactone decarboxylase family 21 104 9.6E-24 T 13-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RAM_18920 56cf83ef2e40cac33bce811e2fd92072 109 SUPERFAMILY SSF69118 12 107 2.22E-29 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RAM_47610 3d9c804b174a62cf1e4454f52e8a4e32 362 TIGRFAM TIGR03450 mycothiol_INO1: inositol 1-phosphate synthase 7 356 7.0E-209 T 13-10-2018 IPR017815 Myo-inositol 1-phosphate synthase, actinobacteria RAM_47610 3d9c804b174a62cf1e4454f52e8a4e32 362 SUPERFAMILY SSF51735 6 358 1.34E-95 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_47610 3d9c804b174a62cf1e4454f52e8a4e32 362 Gene3D G3DSA:3.40.50.720 7 355 1.4E-149 T 13-10-2018 RAM_47610 3d9c804b174a62cf1e4454f52e8a4e32 362 PIRSF PIRSF015578 2 358 4.1E-96 T 13-10-2018 IPR002587 Myo-inositol-1-phosphate synthase GO:0004512|GO:0006021|GO:0008654 KEGG: 00521+5.5.1.4|KEGG: 00562+5.5.1.4|MetaCyc: PWY-2301|MetaCyc: PWY-4661|MetaCyc: PWY-6372|MetaCyc: PWY-6580|MetaCyc: PWY-6664|Reactome: R-HSA-1855183 RAM_47610 3d9c804b174a62cf1e4454f52e8a4e32 362 Pfam PF01658 Myo-inositol-1-phosphate synthase 194 302 5.9E-32 T 13-10-2018 IPR013021 Myo-inositol-1-phosphate synthase, GAPDH-like KEGG: 00521+5.5.1.4|KEGG: 00562+5.5.1.4|MetaCyc: PWY-2301|MetaCyc: PWY-4661|MetaCyc: PWY-6372|MetaCyc: PWY-6580|MetaCyc: PWY-6664|Reactome: R-HSA-1855183 RAM_47610 3d9c804b174a62cf1e4454f52e8a4e32 362 Gene3D G3DSA:3.30.360.10 193 302 1.4E-149 T 13-10-2018 RAM_47610 3d9c804b174a62cf1e4454f52e8a4e32 362 SUPERFAMILY SSF55347 193 301 7.85E-35 T 13-10-2018 RAM_24605 d620307ef5bdb2e4a9696384e9466084 93 Gene3D G3DSA:2.60.200.60 18 92 4.6E-17 T 13-10-2018 RAM_24605 d620307ef5bdb2e4a9696384e9466084 93 Pfam PF05488 PAAR motif 7 83 6.9E-22 T 13-10-2018 IPR008727 PAAR motif RAM_20555 5cd8b63f96e416312d57cd243354ea95 325 Gene3D G3DSA:3.40.50.1100 19 288 1.7E-72 T 13-10-2018 RAM_20555 5cd8b63f96e416312d57cd243354ea95 325 SUPERFAMILY SSF53686 21 301 8.12E-64 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RAM_20555 5cd8b63f96e416312d57cd243354ea95 325 Gene3D G3DSA:3.40.50.1100 42 140 1.7E-72 T 13-10-2018 RAM_20555 5cd8b63f96e416312d57cd243354ea95 325 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 22 280 3.4E-42 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RAM_12785 38445a046b69e05a7534ab411a76d227 150 Gene3D G3DSA:2.40.30.30 2 139 5.9E-34 T 13-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 RAM_12785 38445a046b69e05a7534ab411a76d227 150 SUPERFAMILY SSF82114 3 131 6.1E-34 T 13-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 RAM_12785 38445a046b69e05a7534ab411a76d227 150 SMART SM00904 1 127 7.0E-33 T 13-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 RAM_12785 38445a046b69e05a7534ab411a76d227 150 Pfam PF01687 Riboflavin kinase 3 125 7.4E-29 T 13-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 RAM_30600 ca90ede9b1321fdc6416c1bc405f52b1 40 SUPERFAMILY SSF57840 1 40 8.5E-10 T 13-10-2018 IPR035977 Ribosomal protein L36 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_30600 ca90ede9b1321fdc6416c1bc405f52b1 40 Pfam PF00444 Ribosomal protein L36 1 40 1.8E-13 T 13-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_30600 ca90ede9b1321fdc6416c1bc405f52b1 40 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 40 13.571 T 13-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_29010 d35b859d7cf663259cb00be3ea312bc0 413 Pfam PF06772 Bacterial low temperature requirement A protein (LtrA) 18 394 6.5E-56 T 13-10-2018 IPR010640 Low temperature requirement A RAM_45765 fa1f9439ad1ecdf37147106b3783c0a2 199 PRINTS PR00449 Transforming protein P21 ras signature 75 97 7.2E-5 T 13-10-2018 RAM_45765 fa1f9439ad1ecdf37147106b3783c0a2 199 PRINTS PR00449 Transforming protein P21 ras signature 17 38 7.2E-5 T 13-10-2018 RAM_45765 fa1f9439ad1ecdf37147106b3783c0a2 199 Gene3D G3DSA:3.40.50.300 14 195 9.9E-15 T 13-10-2018 RAM_45765 fa1f9439ad1ecdf37147106b3783c0a2 199 Pfam PF03029 Conserved hypothetical ATP binding protein 21 160 2.7E-21 T 13-10-2018 IPR004130 GPN-loop GTPase RAM_45765 fa1f9439ad1ecdf37147106b3783c0a2 199 SUPERFAMILY SSF52540 15 187 6.82E-21 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_15360 195e9fc30481b134605c453d5ddc4280 334 Pfam PF02678 Pirin 43 144 5.5E-30 T 13-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 RAM_15360 195e9fc30481b134605c453d5ddc4280 334 Gene3D G3DSA:2.60.120.10 36 270 1.6E-61 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_15360 195e9fc30481b134605c453d5ddc4280 334 SUPERFAMILY SSF51182 42 308 3.24E-66 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RAM_15360 195e9fc30481b134605c453d5ddc4280 334 Pfam PF05726 Pirin C-terminal cupin domain 196 294 5.0E-16 T 13-10-2018 IPR008778 Pirin, C-terminal domain Reactome: R-HSA-8935690 RAM_15360 195e9fc30481b134605c453d5ddc4280 334 PIRSF PIRSF006232 22 305 8.8E-77 T 13-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 RAM_04885 9d9133f87b8e307f8dcc57db91d3964e 294 SUPERFAMILY SSF54001 80 235 1.54E-13 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily RAM_04885 9d9133f87b8e307f8dcc57db91d3964e 294 Gene3D G3DSA:3.10.620.30 87 172 7.6E-10 T 13-10-2018 RAM_04885 9d9133f87b8e307f8dcc57db91d3964e 294 Pfam PF01841 Transglutaminase-like superfamily 86 147 1.2E-8 T 13-10-2018 IPR002931 Transglutaminase-like RAM_04885 9d9133f87b8e307f8dcc57db91d3964e 294 SMART SM00460 87 149 0.0048 T 13-10-2018 IPR002931 Transglutaminase-like RAM_13315 fecd36f4a913df090fe2007da148c8fc 452 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 230 237 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 RAM_13315 fecd36f4a913df090fe2007da148c8fc 452 Gene3D G3DSA:3.40.605.10 7 441 7.4E-161 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RAM_13315 fecd36f4a913df090fe2007da148c8fc 452 Pfam PF00171 Aldehyde dehydrogenase family 3 447 8.8E-154 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RAM_13315 fecd36f4a913df090fe2007da148c8fc 452 Gene3D G3DSA:3.40.309.10 234 416 7.4E-161 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RAM_13315 fecd36f4a913df090fe2007da148c8fc 452 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 258 269 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 RAM_13315 fecd36f4a913df090fe2007da148c8fc 452 SUPERFAMILY SSF53720 3 450 3.14E-151 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RAM_01945 ac4449ab92c7bbf27fbfeec60540fc1f 195 Gene3D G3DSA:3.40.50.150 7 183 2.8E-37 T 13-10-2018 RAM_01945 ac4449ab92c7bbf27fbfeec60540fc1f 195 Pfam PF08241 Methyltransferase domain 49 141 2.6E-24 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 RAM_01945 ac4449ab92c7bbf27fbfeec60540fc1f 195 SUPERFAMILY SSF53335 1 159 2.13E-39 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_30540 61e7a46c88d828f66b8e69451af15f1d 254 Gene3D G3DSA:1.10.260.40 1 46 3.6E-6 T 13-10-2018 RAM_30540 61e7a46c88d828f66b8e69451af15f1d 254 Pfam PF01381 Helix-turn-helix 2 37 5.1E-6 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_30540 61e7a46c88d828f66b8e69451af15f1d 254 SUPERFAMILY SSF47413 2 42 5.63E-6 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_46210 ec514bf2bad243f7a42d506354a9679c 271 Pfam PF11209 Protein of unknown function (DUF2993) 14 259 8.7E-54 T 13-10-2018 IPR021373 Protein of unknown function DUF2993 RAM_07220 03c0eae5fee811c02022fe81714ce203 106 Gene3D G3DSA:3.30.70.1060 12 99 1.5E-6 T 13-10-2018 RAM_07220 03c0eae5fee811c02022fe81714ce203 106 Pfam PF02426 Muconolactone delta-isomerase 18 91 1.6E-6 T 13-10-2018 IPR026029 Muconolactone isomerase domain KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185 RAM_31190 154916a51c7ef4688d4b7228f607312f 225 Gene3D G3DSA:3.60.15.10 11 223 7.4E-45 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_31190 154916a51c7ef4688d4b7228f607312f 225 SUPERFAMILY SSF56281 25 220 1.23E-43 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_31190 154916a51c7ef4688d4b7228f607312f 225 Pfam PF00753 Metallo-beta-lactamase superfamily 34 185 5.0E-15 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_31190 154916a51c7ef4688d4b7228f607312f 225 SMART SM00849 36 204 2.4E-29 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_35115 ad106990186723bd437244ccf8e8bae6 151 Pfam PF13474 SnoaL-like domain 42 150 3.1E-10 T 13-10-2018 IPR037401 SnoaL-like domain RAM_35115 ad106990186723bd437244ccf8e8bae6 151 TIGRFAM TIGR02246 TIGR02246: conserved hypothetical protein 26 149 4.7E-22 T 13-10-2018 IPR011944 Steroid delta5-4-isomerase KEGG: 00140+5.3.3.1|KEGG: 00984+5.3.3.1|MetaCyc: PWY-2582|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-699|MetaCyc: PWY-7299 RAM_35115 ad106990186723bd437244ccf8e8bae6 151 Gene3D G3DSA:3.10.450.50 21 149 8.3E-29 T 13-10-2018 RAM_35115 ad106990186723bd437244ccf8e8bae6 151 SUPERFAMILY SSF54427 26 149 4.9E-25 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_01140 fd9aefbd2547308713dcd13f0391b951 172 Gene3D G3DSA:1.20.144.10 89 171 1.2E-14 T 13-10-2018 RAM_01140 fd9aefbd2547308713dcd13f0391b951 172 SMART SM00014 61 165 2.0E-6 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RAM_01140 fd9aefbd2547308713dcd13f0391b951 172 SUPERFAMILY SSF48317 28 166 2.62E-31 T 13-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily RAM_01140 fd9aefbd2547308713dcd13f0391b951 172 Pfam PF01569 PAP2 superfamily 69 169 6.4E-17 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RAM_41720 e7220159ea6c37c029f4234e0801a294 464 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 7 21 - T 13-10-2018 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site RAM_41720 e7220159ea6c37c029f4234e0801a294 464 Pfam PF00232 Glycosyl hydrolase family 1 2 450 3.8E-147 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RAM_41720 e7220159ea6c37c029f4234e0801a294 464 Gene3D G3DSA:3.20.20.80 1 454 1.1E-156 T 13-10-2018 RAM_41720 e7220159ea6c37c029f4234e0801a294 464 SUPERFAMILY SSF51445 2 451 1.01E-150 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_41720 e7220159ea6c37c029f4234e0801a294 464 PRINTS PR00131 Glycosyl hydrolase family 1 signature 397 414 5.8E-21 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RAM_41720 e7220159ea6c37c029f4234e0801a294 464 PRINTS PR00131 Glycosyl hydrolase family 1 signature 376 387 5.8E-21 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RAM_41720 e7220159ea6c37c029f4234e0801a294 464 PRINTS PR00131 Glycosyl hydrolase family 1 signature 286 300 5.8E-21 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RAM_41720 e7220159ea6c37c029f4234e0801a294 464 PRINTS PR00131 Glycosyl hydrolase family 1 signature 356 364 5.8E-21 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RAM_41720 e7220159ea6c37c029f4234e0801a294 464 PRINTS PR00131 Glycosyl hydrolase family 1 signature 421 433 5.8E-21 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RAM_41720 e7220159ea6c37c029f4234e0801a294 464 TIGRFAM TIGR03356 BGL: beta-galactosidase 3 442 1.5E-166 T 13-10-2018 IPR017736 Glycoside hydrolase, family 1, beta-glucosidase GO:0008422|GO:0030245 KEGG: 00460+3.2.1.21|KEGG: 00500+3.2.1.21|KEGG: 00940+3.2.1.21|MetaCyc: PWY-3121|MetaCyc: PWY-5176|MetaCyc: PWY-6002|MetaCyc: PWY-6788|MetaCyc: PWY-7091|MetaCyc: PWY-7092|MetaCyc: PWY-7913 RAM_16880 580ccb29faf6836227cc980bb2613802 312 Gene3D G3DSA:3.40.50.1100 51 142 1.2E-76 T 13-10-2018 RAM_16880 580ccb29faf6836227cc980bb2613802 312 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 19 299 2.6E-65 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RAM_16880 580ccb29faf6836227cc980bb2613802 312 SUPERFAMILY SSF53686 5 307 1.57E-70 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RAM_16880 580ccb29faf6836227cc980bb2613802 312 Gene3D G3DSA:3.40.50.1100 15 303 1.2E-76 T 13-10-2018 RAM_28260 c497aba40bad7699d85c2267750f2dfc 253 Pfam PF10067 Predicted membrane protein (DUF2306) 76 222 6.3E-25 T 13-10-2018 IPR018750 Protein of unknown function DUF2306, membrane RAM_10135 be93f98adcabac0b95fbde7d35273b4a 217 Pfam PF07883 Cupin domain 153 209 1.0E-8 T 13-10-2018 IPR013096 Cupin 2, conserved barrel RAM_10135 be93f98adcabac0b95fbde7d35273b4a 217 SUPERFAMILY SSF51182 78 209 7.29E-16 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RAM_10135 be93f98adcabac0b95fbde7d35273b4a 217 SUPERFAMILY SSF47413 32 95 1.45E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_10135 be93f98adcabac0b95fbde7d35273b4a 217 Gene3D G3DSA:1.10.260.40 30 98 7.9E-18 T 13-10-2018 RAM_10135 be93f98adcabac0b95fbde7d35273b4a 217 Pfam PF13560 Helix-turn-helix domain 35 93 4.0E-12 T 13-10-2018 RAM_10135 be93f98adcabac0b95fbde7d35273b4a 217 Gene3D G3DSA:2.60.120.10 116 210 4.3E-11 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_10135 be93f98adcabac0b95fbde7d35273b4a 217 SMART SM00530 38 93 7.9E-15 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_02520 63d2d526a885d76daa3359581473e864 400 Pfam PF02687 FtsX-like permease family 308 393 4.9E-10 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 RAM_02520 63d2d526a885d76daa3359581473e864 400 Pfam PF12704 MacB-like periplasmic core domain 21 241 8.9E-35 T 13-10-2018 IPR025857 MacB-like periplasmic core domain RAM_07610 c19f421d26d520d1e4d95c79f5793e4b 327 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 3 121 5.2E-24 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 RAM_07610 c19f421d26d520d1e4d95c79f5793e4b 327 Gene3D G3DSA:3.40.50.720 2 124 2.1E-38 T 13-10-2018 RAM_07610 c19f421d26d520d1e4d95c79f5793e4b 327 Gene3D G3DSA:3.30.360.10 125 320 2.3E-49 T 13-10-2018 RAM_07610 c19f421d26d520d1e4d95c79f5793e4b 327 SUPERFAMILY SSF51735 3 154 7.89E-51 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_07610 c19f421d26d520d1e4d95c79f5793e4b 327 SUPERFAMILY SSF55347 128 293 2.29E-33 T 13-10-2018 RAM_33230 efccad2d335c0d8e872c4aa0b0b1c029 552 SMART SM00231 407 551 1.3E-6 T 13-10-2018 IPR000421 Coagulation factor 5/8 C-terminal domain RAM_33230 efccad2d335c0d8e872c4aa0b0b1c029 552 Pfam PF00754 F5/8 type C domain 425 546 2.0E-18 T 13-10-2018 IPR000421 Coagulation factor 5/8 C-terminal domain RAM_33230 efccad2d335c0d8e872c4aa0b0b1c029 552 Gene3D G3DSA:3.20.20.80 40 395 6.4E-19 T 13-10-2018 RAM_33230 efccad2d335c0d8e872c4aa0b0b1c029 552 SUPERFAMILY SSF49785 412 551 1.63E-24 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_33230 efccad2d335c0d8e872c4aa0b0b1c029 552 Gene3D G3DSA:2.60.120.260 415 552 7.4E-30 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_26825 ffdd23f5d418010259d943a91fcd5d58 288 SMART SM00559 52 180 4.0E-32 T 13-10-2018 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: R-HSA-164843|Reactome: R-HSA-1834949|Reactome: R-HSA-3270619|Reactome: R-HSA-5693571|Reactome: R-HSA-6798695 RAM_26825 ffdd23f5d418010259d943a91fcd5d58 288 Pfam PF02735 Ku70/Ku80 beta-barrel domain 11 189 4.3E-40 T 13-10-2018 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: R-HSA-164843|Reactome: R-HSA-1834949|Reactome: R-HSA-3270619|Reactome: R-HSA-5693571|Reactome: R-HSA-6798695 RAM_26825 ffdd23f5d418010259d943a91fcd5d58 288 Gene3D G3DSA:2.40.290.10 2 180 4.9E-19 T 13-10-2018 IPR016194 SPOC-like, C-terminal domain superfamily RAM_26825 ffdd23f5d418010259d943a91fcd5d58 288 TIGRFAM TIGR02772 Ku_bact: Ku protein 1 257 4.3E-90 T 13-10-2018 IPR009187 Non-homologous end joining protein Ku, prokaryotic type RAM_26825 ffdd23f5d418010259d943a91fcd5d58 288 PIRSF PIRSF006493 1 285 1.0E-91 T 13-10-2018 IPR009187 Non-homologous end joining protein Ku, prokaryotic type RAM_26825 ffdd23f5d418010259d943a91fcd5d58 288 Hamap MF_01875 Non-homologous end joining protein Ku [ku]. 1 254 32.848 T 13-10-2018 IPR009187 Non-homologous end joining protein Ku, prokaryotic type RAM_26825 ffdd23f5d418010259d943a91fcd5d58 288 SUPERFAMILY SSF100939 1 259 6.67E-57 T 13-10-2018 IPR016194 SPOC-like, C-terminal domain superfamily RAM_14975 c826cc91a9512a2ec65a1cb3f608ad34 267 SUPERFAMILY SSF51735 3 240 1.16E-61 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_14975 c826cc91a9512a2ec65a1cb3f608ad34 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 3.1E-19 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_14975 c826cc91a9512a2ec65a1cb3f608ad34 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 75 86 3.1E-19 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_14975 c826cc91a9512a2ec65a1cb3f608ad34 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 122 138 3.1E-19 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_14975 c826cc91a9512a2ec65a1cb3f608ad34 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 167 3.1E-19 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_14975 c826cc91a9512a2ec65a1cb3f608ad34 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 186 3.1E-19 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_14975 c826cc91a9512a2ec65a1cb3f608ad34 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 75 86 7.4E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_14975 c826cc91a9512a2ec65a1cb3f608ad34 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 128 136 7.4E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_14975 c826cc91a9512a2ec65a1cb3f608ad34 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 167 7.4E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_14975 c826cc91a9512a2ec65a1cb3f608ad34 267 Gene3D G3DSA:3.40.50.720 2 264 1.3E-67 T 13-10-2018 RAM_14975 c826cc91a9512a2ec65a1cb3f608ad34 267 Pfam PF00106 short chain dehydrogenase 6 187 1.9E-49 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_04665 60cda198b28caa4f4ba630df418b1518 327 Gene3D G3DSA:1.20.5.170 2 50 1.2E-18 T 13-10-2018 RAM_04665 60cda198b28caa4f4ba630df418b1518 327 Gene3D G3DSA:3.40.50.300 51 262 9.0E-80 T 13-10-2018 RAM_04665 60cda198b28caa4f4ba630df418b1518 327 Gene3D G3DSA:1.10.287.130 263 326 8.0E-23 T 13-10-2018 RAM_04665 60cda198b28caa4f4ba630df418b1518 327 Pfam PF03308 ArgK protein 22 293 4.0E-110 T 13-10-2018 RAM_04665 60cda198b28caa4f4ba630df418b1518 327 SUPERFAMILY SSF52540 5 325 2.76E-93 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_04665 60cda198b28caa4f4ba630df418b1518 327 TIGRFAM TIGR00750 lao: LAO/AO transport system ATPase 17 322 1.6E-113 T 13-10-2018 IPR005129 SIMIBI class G3E GTPase, ArgK/MeaB GO:0003924|GO:0005525 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 RAM_44455 0103e2374c398aad31e67fe7a8f3c2ef 409 Gene3D G3DSA:3.40.50.200 66 407 2.9E-68 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RAM_44455 0103e2374c398aad31e67fe7a8f3c2ef 409 SUPERFAMILY SSF52743 74 405 3.4E-35 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RAM_07390 97c3d02fb864960c6058930eed8061a8 500 Pfam PF03055 Retinal pigment epithelial membrane protein 18 491 2.5E-79 T 13-10-2018 IPR004294 Carotenoid oxygenase GO:0016702|GO:0055114 RAM_27835 3f5318e7e905e11d7dfa0088fbdb4578 198 Pfam PF07681 DoxX 36 137 6.7E-7 T 13-10-2018 IPR032808 DoxX family RAM_30785 3027cdaec78fa10122662e6e77f3dcf4 397 Gene3D G3DSA:1.20.1530.20 4 384 1.4E-56 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily RAM_30785 3027cdaec78fa10122662e6e77f3dcf4 397 Pfam PF00999 Sodium/hydrogen exchanger family 14 371 1.5E-45 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 RAM_34575 a4a1eab511d15a97e8bd43e44ee7a4d0 217 Pfam PF00574 Clp protease 36 209 5.6E-75 T 13-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA RAM_34575 a4a1eab511d15a97e8bd43e44ee7a4d0 217 PRINTS PR00127 Clp protease catalytic subunit P signature 129 148 1.3E-41 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RAM_34575 a4a1eab511d15a97e8bd43e44ee7a4d0 217 PRINTS PR00127 Clp protease catalytic subunit P signature 108 125 1.3E-41 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RAM_34575 a4a1eab511d15a97e8bd43e44ee7a4d0 217 PRINTS PR00127 Clp protease catalytic subunit P signature 187 206 1.3E-41 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RAM_34575 a4a1eab511d15a97e8bd43e44ee7a4d0 217 PRINTS PR00127 Clp protease catalytic subunit P signature 37 52 1.3E-41 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RAM_34575 a4a1eab511d15a97e8bd43e44ee7a4d0 217 PRINTS PR00127 Clp protease catalytic subunit P signature 77 97 1.3E-41 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RAM_34575 a4a1eab511d15a97e8bd43e44ee7a4d0 217 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 21 212 39.48 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RAM_34575 a4a1eab511d15a97e8bd43e44ee7a4d0 217 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 130 143 - T 13-10-2018 IPR033135 ClpP, histidine active site RAM_34575 a4a1eab511d15a97e8bd43e44ee7a4d0 217 Gene3D G3DSA:3.90.226.10 12 216 1.2E-78 T 13-10-2018 RAM_34575 a4a1eab511d15a97e8bd43e44ee7a4d0 217 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 108 119 - T 13-10-2018 IPR018215 ClpP, Ser active site RAM_34575 a4a1eab511d15a97e8bd43e44ee7a4d0 217 SUPERFAMILY SSF52096 29 214 1.04E-62 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_02415 dfc49bae19c0e9b5a363c4814ede5588 410 SUPERFAMILY SSF55874 292 407 2.1E-17 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_02415 dfc49bae19c0e9b5a363c4814ede5588 410 SMART SM00387 320 410 1.5E-5 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_02415 dfc49bae19c0e9b5a363c4814ede5588 410 Gene3D G3DSA:3.30.565.10 288 408 1.8E-28 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_02415 dfc49bae19c0e9b5a363c4814ede5588 410 Pfam PF07730 Histidine kinase 220 286 8.5E-14 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_02415 dfc49bae19c0e9b5a363c4814ede5588 410 Pfam PF13796 Putative sensor 25 191 1.9E-17 T 13-10-2018 IPR025828 Putative sensor domain RAM_44370 4f6cf937b7caa280205285678f72b9c3 141 Gene3D G3DSA:3.30.70.1060 1 118 5.2E-33 T 13-10-2018 RAM_44370 4f6cf937b7caa280205285678f72b9c3 141 SUPERFAMILY SSF54909 1 118 1.53E-31 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_44370 4f6cf937b7caa280205285678f72b9c3 141 Pfam PF03795 YCII-related domain 1 115 2.0E-24 T 13-10-2018 IPR005545 YCII-related RAM_26730 fcec0e58f8f0c190ab92dac14db9e40b 194 Gene3D G3DSA:3.40.430.10 1 193 7.9E-35 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RAM_26730 fcec0e58f8f0c190ab92dac14db9e40b 194 Pfam PF01872 RibD C-terminal domain 3 186 1.0E-20 T 13-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 RAM_26730 fcec0e58f8f0c190ab92dac14db9e40b 194 SUPERFAMILY SSF53597 2 193 2.36E-21 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RAM_47015 b6fdf4d7472590f2ff7b831906d1370a 256 Pfam PF13349 Putative adhesin 124 254 2.9E-13 T 13-10-2018 IPR025164 Putative adhesin RAM_25350 a9b8e3a11644d0d2db84b3d904eb28a4 384 SUPERFAMILY SSF51735 1 364 4.69E-58 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_25350 a9b8e3a11644d0d2db84b3d904eb28a4 384 Gene3D G3DSA:3.40.50.720 2 293 1.0E-158 T 13-10-2018 RAM_25350 a9b8e3a11644d0d2db84b3d904eb28a4 384 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 291 2.2E-25 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 RAM_25350 a9b8e3a11644d0d2db84b3d904eb28a4 384 Gene3D G3DSA:3.90.25.10 209 367 1.0E-158 T 13-10-2018 RAM_38150 a1dffb2b57406f06bab82bc67f24746a 322 Gene3D G3DSA:1.25.40.10 21 313 3.0E-14 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_38150 a1dffb2b57406f06bab82bc67f24746a 322 SUPERFAMILY SSF48452 73 277 6.88E-8 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_35980 78ac91b84e78678ffa4f74cc61800855 187 SUPERFAMILY SSF109854 3 138 3.05E-27 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_35980 78ac91b84e78678ffa4f74cc61800855 187 Gene3D G3DSA:1.20.120.450 1 141 8.9E-21 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_35980 78ac91b84e78678ffa4f74cc61800855 187 Pfam PF04978 Protein of unknown function (DUF664) 7 138 1.4E-26 T 13-10-2018 IPR007061 Protein of unknown function DUF664 RAM_01795 278f2942526e7c86c3a5c6081a3c44c2 100 Pfam PF12728 Helix-turn-helix domain 41 89 1.6E-6 T 13-10-2018 RAM_01795 278f2942526e7c86c3a5c6081a3c44c2 100 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 42 88 7.3E-11 T 13-10-2018 IPR010093 SinI-like, DNA-binding domain GO:0003677 RAM_05750 e35b11f935fcf5e05b8f001255ef176b 109 SUPERFAMILY SSF46767 8 80 1.7E-14 T 13-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 RAM_05750 e35b11f935fcf5e05b8f001255ef176b 109 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 9 82 8.0E-16 T 13-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 RAM_05750 e35b11f935fcf5e05b8f001255ef176b 109 Gene3D G3DSA:1.10.10.10 5 103 1.1E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_13405 78c6c6f106b29acca2b2cbf7af733546 277 TIGRFAM TIGR03425 urea_degr_2: urea carboxylase-associated protein 2 45 271 1.6E-88 T 13-10-2018 IPR017792 Urea carboxylase-associated protein 2 RAM_13405 78c6c6f106b29acca2b2cbf7af733546 277 Pfam PF09347 Domain of unknown function (DUF1989) 49 213 2.4E-42 T 13-10-2018 IPR018959 Protein of unknown function DUF1989 RAM_44425 65cce5f03579a5d26bb8849206233307 1044 Pfam PF03534 Salmonella virulence plasmid 65kDa B protein 15 63 1.7E-6 T 13-10-2018 IPR003284 Salmonella virulence plasmid 65kDa B protein GO:0005737 RAM_44425 65cce5f03579a5d26bb8849206233307 1044 Gene3D G3DSA:2.180.10.10 666 897 1.5E-5 T 13-10-2018 RAM_14270 f1a9749f249ba8fefd90b943940a49c0 370 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 16 360 7.3E-84 T 13-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 RAM_14270 f1a9749f249ba8fefd90b943940a49c0 370 ProSitePatterns PS01054 Transaldolase signature 1. 42 50 - T 13-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 RAM_14270 f1a9749f249ba8fefd90b943940a49c0 370 PIRSF PIRSF036915 1 370 6.0E-171 T 13-10-2018 IPR004732 Transaldolase type 2 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 RAM_14270 f1a9749f249ba8fefd90b943940a49c0 370 Gene3D G3DSA:3.20.20.70 4 366 4.8E-160 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_14270 f1a9749f249ba8fefd90b943940a49c0 370 Hamap MF_00493 Transaldolase [tal]. 1 370 157.906 T 13-10-2018 IPR004732 Transaldolase type 2 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 RAM_14270 f1a9749f249ba8fefd90b943940a49c0 370 TIGRFAM TIGR00876 tal_mycobact: transaldolase 12 359 8.2E-140 T 13-10-2018 IPR004732 Transaldolase type 2 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 RAM_14270 f1a9749f249ba8fefd90b943940a49c0 370 SUPERFAMILY SSF51569 8 364 1.47E-75 T 13-10-2018 RAM_27315 bf48c2486059f196990929780be88d49 300 Gene3D G3DSA:2.60.200.40 125 288 1.8E-9 T 13-10-2018 RAM_27315 bf48c2486059f196990929780be88d49 300 Gene3D G3DSA:3.40.50.10330 5 124 3.9E-21 T 13-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 RAM_27315 bf48c2486059f196990929780be88d49 300 SUPERFAMILY SSF111331 8 297 8.94E-45 T 13-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily RAM_27315 bf48c2486059f196990929780be88d49 300 Pfam PF00781 Diacylglycerol kinase catalytic domain 8 125 3.8E-20 T 13-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 RAM_27315 bf48c2486059f196990929780be88d49 300 SMART SM00046 6 125 2.5E-4 T 13-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 RAM_00860 7c49a62d807da814a6194466dac23c8a 758 Pfam PF13625 Helicase conserved C-terminal domain 480 596 2.9E-26 T 13-10-2018 IPR032830 Helicase XPB/Ssl2, N-terminal domain Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167246|Reactome: R-HSA-427413|Reactome: R-HSA-5696395|Reactome: R-HSA-5696400|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-72086|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73863|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-77075 RAM_30725 e1d8d23fcd21d7fcb6c4da50e7815367 580 Gene3D G3DSA:3.30.9.50 71 298 1.2E-107 T 13-10-2018 RAM_30725 e1d8d23fcd21d7fcb6c4da50e7815367 580 Gene3D G3DSA:3.40.30.120 424 580 9.7E-44 T 13-10-2018 RAM_30725 e1d8d23fcd21d7fcb6c4da50e7815367 580 Gene3D G3DSA:3.50.50.60 5 361 1.2E-107 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_30725 e1d8d23fcd21d7fcb6c4da50e7815367 580 Pfam PF01494 FAD binding domain 4 367 1.6E-119 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_30725 e1d8d23fcd21d7fcb6c4da50e7815367 580 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 168 183 8.5E-48 T 13-10-2018 RAM_30725 e1d8d23fcd21d7fcb6c4da50e7815367 580 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 301 316 8.5E-48 T 13-10-2018 RAM_30725 e1d8d23fcd21d7fcb6c4da50e7815367 580 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 334 352 8.5E-48 T 13-10-2018 RAM_30725 e1d8d23fcd21d7fcb6c4da50e7815367 580 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 352 368 8.5E-48 T 13-10-2018 RAM_30725 e1d8d23fcd21d7fcb6c4da50e7815367 580 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 316 332 8.5E-48 T 13-10-2018 RAM_30725 e1d8d23fcd21d7fcb6c4da50e7815367 580 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 8.5E-48 T 13-10-2018 RAM_30725 e1d8d23fcd21d7fcb6c4da50e7815367 580 SUPERFAMILY SSF51905 4 375 5.07E-53 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_03025 7fd01e19407c2aaa056af4fb3d1780d1 116 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 76 7.2E-15 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_03025 7fd01e19407c2aaa056af4fb3d1780d1 116 Gene3D G3DSA:1.10.10.10 9 116 6.0E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_03025 7fd01e19407c2aaa056af4fb3d1780d1 116 SMART SM00345 17 76 7.4E-12 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RAM_03025 7fd01e19407c2aaa056af4fb3d1780d1 116 SUPERFAMILY SSF46785 5 86 9.42E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_22840 a1c492a0e252003e1dfb6d654eea1d16 330 SUPERFAMILY SSF53474 48 326 2.63E-31 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_22840 a1c492a0e252003e1dfb6d654eea1d16 330 Gene3D G3DSA:3.40.50.1820 17 329 9.3E-78 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_22840 a1c492a0e252003e1dfb6d654eea1d16 330 Pfam PF00756 Putative esterase 62 321 6.3E-32 T 13-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 RAM_04035 a77eb94c29f6d56862a352062cd8eb93 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 1.5E-19 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_04035 a77eb94c29f6d56862a352062cd8eb93 300 Gene3D G3DSA:1.10.10.10 1 92 4.5E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_04035 a77eb94c29f6d56862a352062cd8eb93 300 Pfam PF03466 LysR substrate binding domain 88 295 1.5E-42 T 13-10-2018 IPR005119 LysR, substrate-binding RAM_04035 a77eb94c29f6d56862a352062cd8eb93 300 Gene3D G3DSA:3.40.190.290 93 299 3.1E-43 T 13-10-2018 RAM_04035 a77eb94c29f6d56862a352062cd8eb93 300 SUPERFAMILY SSF46785 1 112 4.31E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_04035 a77eb94c29f6d56862a352062cd8eb93 300 SUPERFAMILY SSF53850 89 298 6.98E-41 T 13-10-2018 RAM_07195 1bec95ad1f97faf1e384a3a03bd02d80 112 Pfam PF10824 Excreted virulence factor EspC, type VII ESX diderm 12 105 3.0E-10 T 13-10-2018 IPR022536 ESX-1 secretion-associated protein EspC GO:0009306 RAM_35785 f6a496e08a6ace4cdae5655f9314d293 218 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 203 1.6E-21 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 RAM_35785 f6a496e08a6ace4cdae5655f9314d293 218 Gene3D G3DSA:3.40.50.1240 2 214 3.9E-29 T 13-10-2018 IPR029033 Histidine phosphatase superfamily RAM_35785 f6a496e08a6ace4cdae5655f9314d293 218 SMART SM00855 3 162 1.5E-7 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 RAM_35785 f6a496e08a6ace4cdae5655f9314d293 218 SUPERFAMILY SSF53254 4 208 3.93E-32 T 13-10-2018 IPR029033 Histidine phosphatase superfamily RAM_34425 1066d483bd5b5d7a1c540c56ba3e63d1 318 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_34425 1066d483bd5b5d7a1c540c56ba3e63d1 318 SUPERFAMILY SSF52540 16 238 1.0E-65 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_34425 1066d483bd5b5d7a1c540c56ba3e63d1 318 SMART SM00382 40 247 1.2E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_34425 1066d483bd5b5d7a1c540c56ba3e63d1 318 Gene3D G3DSA:3.40.50.300 4 249 1.3E-68 T 13-10-2018 RAM_34425 1066d483bd5b5d7a1c540c56ba3e63d1 318 Pfam PF00005 ABC transporter 32 174 1.7E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_34280 d1daf9a062531879f52f747e75847153 206 Gene3D G3DSA:3.40.50.150 32 205 2.0E-28 T 13-10-2018 RAM_34280 d1daf9a062531879f52f747e75847153 206 Pfam PF08241 Methyltransferase domain 65 156 2.7E-16 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 RAM_34280 d1daf9a062531879f52f747e75847153 206 SUPERFAMILY SSF53335 36 196 1.79E-29 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_47695 2fd0d15ce8cae4ec3b45380245aada1c 199 Pfam PF12079 Protein of unknown function (DUF3558) 16 194 2.8E-27 T 13-10-2018 IPR024520 Protein of unknown function DUF3558 RAM_22250 bb6996191d5a45ebd67144ac3491dfaa 177 Pfam PF00583 Acetyltransferase (GNAT) family 18 137 8.3E-9 T 13-10-2018 IPR000182 GNAT domain RAM_22250 bb6996191d5a45ebd67144ac3491dfaa 177 Gene3D G3DSA:3.40.630.30 1 151 3.9E-16 T 13-10-2018 RAM_22250 bb6996191d5a45ebd67144ac3491dfaa 177 SUPERFAMILY SSF55729 3 143 4.61E-17 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_47335 8cf65a7ea9c3b59b5bf45fabafe1dd24 184 SUPERFAMILY SSF55718 67 180 3.06E-18 T 13-10-2018 IPR036527 SCP2 sterol-binding domain superfamily RAM_47335 8cf65a7ea9c3b59b5bf45fabafe1dd24 184 Pfam PF02036 SCP-2 sterol transfer family 114 175 4.3E-9 T 13-10-2018 IPR003033 SCP2 sterol-binding domain RAM_47335 8cf65a7ea9c3b59b5bf45fabafe1dd24 184 Gene3D G3DSA:3.30.1050.10 56 182 3.7E-19 T 13-10-2018 IPR036527 SCP2 sterol-binding domain superfamily RAM_19355 538e442bb68075ee32224cc1944bc736 312 Pfam PF00106 short chain dehydrogenase 6 148 3.0E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_19355 538e442bb68075ee32224cc1944bc736 312 Gene3D G3DSA:3.40.50.720 2 308 2.2E-39 T 13-10-2018 RAM_19355 538e442bb68075ee32224cc1944bc736 312 SUPERFAMILY SSF51735 1 273 4.83E-28 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_22780 5be53fba7b8940b9a2e80210d10961e2 399 Pfam PF00266 Aminotransferase class-V 22 389 5.0E-57 T 13-10-2018 IPR000192 Aminotransferase class V domain RAM_22780 5be53fba7b8940b9a2e80210d10961e2 399 Gene3D G3DSA:3.40.640.10 28 281 4.4E-122 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_22780 5be53fba7b8940b9a2e80210d10961e2 399 TIGRFAM TIGR01976 am_tr_V_VC1184: cysteine desulfurase family protein 3 391 1.7E-143 T 13-10-2018 IPR011340 Cysteine desulfurase-related RAM_22780 5be53fba7b8940b9a2e80210d10961e2 399 SUPERFAMILY SSF53383 3 395 6.2E-78 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_22780 5be53fba7b8940b9a2e80210d10961e2 399 Gene3D G3DSA:3.90.1150.10 19 391 4.4E-122 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_03570 d79dc3b73f032f839b3a89c2225f2316 435 Gene3D G3DSA:1.10.3370.10 1 430 4.1E-158 T 13-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 RAM_03570 d79dc3b73f032f839b3a89c2225f2316 435 PRINTS PR00303 Preprotein translocase SecY subunit signature 71 91 4.9E-100 T 13-10-2018 RAM_03570 d79dc3b73f032f839b3a89c2225f2316 435 PRINTS PR00303 Preprotein translocase SecY subunit signature 367 385 4.9E-100 T 13-10-2018 RAM_03570 d79dc3b73f032f839b3a89c2225f2316 435 PRINTS PR00303 Preprotein translocase SecY subunit signature 403 421 4.9E-100 T 13-10-2018 RAM_03570 d79dc3b73f032f839b3a89c2225f2316 435 PRINTS PR00303 Preprotein translocase SecY subunit signature 180 203 4.9E-100 T 13-10-2018 RAM_03570 d79dc3b73f032f839b3a89c2225f2316 435 PRINTS PR00303 Preprotein translocase SecY subunit signature 312 334 4.9E-100 T 13-10-2018 RAM_03570 d79dc3b73f032f839b3a89c2225f2316 435 PRINTS PR00303 Preprotein translocase SecY subunit signature 154 179 4.9E-100 T 13-10-2018 RAM_03570 d79dc3b73f032f839b3a89c2225f2316 435 PRINTS PR00303 Preprotein translocase SecY subunit signature 267 286 4.9E-100 T 13-10-2018 RAM_03570 d79dc3b73f032f839b3a89c2225f2316 435 PRINTS PR00303 Preprotein translocase SecY subunit signature 112 135 4.9E-100 T 13-10-2018 RAM_03570 d79dc3b73f032f839b3a89c2225f2316 435 PRINTS PR00303 Preprotein translocase SecY subunit signature 18 36 4.9E-100 T 13-10-2018 RAM_03570 d79dc3b73f032f839b3a89c2225f2316 435 Pfam PF00344 SecY translocase 72 418 2.6E-112 T 13-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 RAM_03570 d79dc3b73f032f839b3a89c2225f2316 435 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 15 430 3.6E-129 T 13-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 RAM_03570 d79dc3b73f032f839b3a89c2225f2316 435 PIRSF PIRSF004557 1 435 2.6E-117 T 13-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 RAM_03570 d79dc3b73f032f839b3a89c2225f2316 435 ProSitePatterns PS00756 Protein secY signature 2. 173 190 - T 13-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 RAM_03570 d79dc3b73f032f839b3a89c2225f2316 435 Hamap MF_01465 Protein translocase subunit SecY [secY]. 5 434 28.803 T 13-10-2018 IPR026593 Protein translocase subunit SecY RAM_03570 d79dc3b73f032f839b3a89c2225f2316 435 SUPERFAMILY SSF103491 2 425 1.05E-118 T 13-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 RAM_03865 e6ef166b5eeee5aa00dcc94781a3ec88 135 SMART SM00226 4 129 1.7E-40 T 13-10-2018 IPR023485 Phosphotyrosine protein phosphatase I RAM_03865 e6ef166b5eeee5aa00dcc94781a3ec88 135 SUPERFAMILY SSF52788 4 127 3.14E-36 T 13-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily RAM_03865 e6ef166b5eeee5aa00dcc94781a3ec88 135 Gene3D G3DSA:3.40.50.2300 2 134 1.3E-52 T 13-10-2018 RAM_03865 e6ef166b5eeee5aa00dcc94781a3ec88 135 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 6 127 9.8E-23 T 13-10-2018 IPR023485 Phosphotyrosine protein phosphatase I RAM_43980 58e41cb13517318090830607a79c9e41 192 Hamap MF_00163 Peptide deformylase [def]. 2 170 28.893 T 13-10-2018 IPR023635 Peptide deformylase RAM_43980 58e41cb13517318090830607a79c9e41 192 SUPERFAMILY SSF56420 3 182 1.44E-54 T 13-10-2018 IPR036821 Peptide deformylase superfamily RAM_43980 58e41cb13517318090830607a79c9e41 192 PIRSF PIRSF004749 1 182 5.2E-45 T 13-10-2018 IPR023635 Peptide deformylase RAM_43980 58e41cb13517318090830607a79c9e41 192 Gene3D G3DSA:3.90.45.10 1 190 2.2E-66 T 13-10-2018 IPR036821 Peptide deformylase superfamily RAM_43980 58e41cb13517318090830607a79c9e41 192 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 6 164 3.5E-40 T 13-10-2018 IPR023635 Peptide deformylase RAM_43980 58e41cb13517318090830607a79c9e41 192 Pfam PF01327 Polypeptide deformylase 4 156 1.2E-45 T 13-10-2018 IPR023635 Peptide deformylase RAM_43980 58e41cb13517318090830607a79c9e41 192 PRINTS PR01576 Peptide deformylase signature 33 62 3.6E-31 T 13-10-2018 IPR023635 Peptide deformylase RAM_43980 58e41cb13517318090830607a79c9e41 192 PRINTS PR01576 Peptide deformylase signature 97 108 3.6E-31 T 13-10-2018 IPR023635 Peptide deformylase RAM_43980 58e41cb13517318090830607a79c9e41 192 PRINTS PR01576 Peptide deformylase signature 128 157 3.6E-31 T 13-10-2018 IPR023635 Peptide deformylase RAM_43980 58e41cb13517318090830607a79c9e41 192 PRINTS PR01576 Peptide deformylase signature 109 127 3.6E-31 T 13-10-2018 IPR023635 Peptide deformylase RAM_28975 e93446fa408acac9c7852a6bb7a94a67 51 Gene3D G3DSA:3.10.450.50 6 50 3.4E-7 T 13-10-2018 RAM_01270 7173f968113552f7e609a40ed5a0472b 74 Pfam PF13275 S4 domain 7 67 1.1E-24 T 13-10-2018 RAM_01270 7173f968113552f7e609a40ed5a0472b 74 SUPERFAMILY SSF55174 5 64 5.23E-18 T 13-10-2018 RAM_01270 7173f968113552f7e609a40ed5a0472b 74 Gene3D G3DSA:3.10.290.10 1 72 1.2E-22 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 RAM_38430 d1f46a0e18938d3e7088c8964525801f 354 Pfam PF00248 Aldo/keto reductase family 19 313 5.4E-68 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain RAM_38430 d1f46a0e18938d3e7088c8964525801f 354 Gene3D G3DSA:3.20.20.100 5 331 6.8E-109 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_38430 d1f46a0e18938d3e7088c8964525801f 354 SUPERFAMILY SSF51430 5 313 4.45E-92 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_24980 64fc9f62017633bec079a77877c24e17 267 Gene3D G3DSA:2.160.20.80 167 252 3.2E-20 T 13-10-2018 RAM_24980 64fc9f62017633bec079a77877c24e17 267 SUPERFAMILY SSF141571 176 250 1.96E-19 T 13-10-2018 RAM_24980 64fc9f62017633bec079a77877c24e17 267 Pfam PF00805 Pentapeptide repeats (8 copies) 204 243 1.4E-9 T 13-10-2018 IPR001646 Pentapeptide repeat RAM_24980 64fc9f62017633bec079a77877c24e17 267 Pfam PF00805 Pentapeptide repeats (8 copies) 175 203 0.0043 T 13-10-2018 IPR001646 Pentapeptide repeat RAM_33830 a1c3a75e6797bf317fb039034ea416fc 199 SUPERFAMILY SSF48498 88 192 8.45E-8 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_33830 a1c3a75e6797bf317fb039034ea416fc 199 SUPERFAMILY SSF46689 9 92 2.34E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_33830 a1c3a75e6797bf317fb039034ea416fc 199 Pfam PF00440 Bacterial regulatory proteins, tetR family 36 68 3.7E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_33830 a1c3a75e6797bf317fb039034ea416fc 199 Gene3D G3DSA:1.10.357.10 7 197 2.1E-25 T 13-10-2018 RAM_03265 b7993e629cb1f3de1aec9f0c8d0dd867 403 Gene3D G3DSA:3.40.50.2000 24 396 1.4E-98 T 13-10-2018 RAM_03265 b7993e629cb1f3de1aec9f0c8d0dd867 403 Gene3D G3DSA:3.40.50.2000 222 384 1.4E-98 T 13-10-2018 RAM_03265 b7993e629cb1f3de1aec9f0c8d0dd867 403 Pfam PF06722 Protein of unknown function (DUF1205) 193 286 6.2E-36 T 13-10-2018 IPR010610 Domain of unknown function DUF1205 RAM_03265 b7993e629cb1f3de1aec9f0c8d0dd867 403 SUPERFAMILY SSF53756 24 400 7.99E-57 T 13-10-2018 RAM_23685 828e83f98df245fa949485bc7f2d722b 241 SUPERFAMILY SSF53474 1 240 8.9E-35 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_23685 828e83f98df245fa949485bc7f2d722b 241 Pfam PF01738 Dienelactone hydrolase family 16 239 2.2E-31 T 13-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 RAM_23685 828e83f98df245fa949485bc7f2d722b 241 Gene3D G3DSA:3.40.50.1820 2 239 1.8E-39 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_00930 d0cd5449c3debdb91d0b40c662ccaeb6 213 Pfam PF14016 Protein of unknown function (DUF4232) 76 210 2.1E-32 T 13-10-2018 IPR025326 Protein of unknown function DUF4232 RAM_02705 e3cfc702f398de77e75564f414217619 174 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 9 136 3.1E-37 T 13-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_02705 e3cfc702f398de77e75564f414217619 174 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 1 146 26.105 T 13-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_02705 e3cfc702f398de77e75564f414217619 174 Pfam PF12838 4Fe-4S dicluster domain 52 110 2.8E-11 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RAM_02705 e3cfc702f398de77e75564f414217619 174 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 53 64 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RAM_02705 e3cfc702f398de77e75564f414217619 174 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 98 109 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RAM_02705 e3cfc702f398de77e75564f414217619 174 SUPERFAMILY SSF54862 26 141 3.98E-25 T 13-10-2018 RAM_02705 e3cfc702f398de77e75564f414217619 174 Gene3D G3DSA:3.30.70.3270 26 174 7.4E-44 T 13-10-2018 RAM_13635 5c5d4c2b768734ffa9eb3c8be3782362 452 Pfam PF10009 Uncharacterized protein conserved in bacteria (DUF2252) 61 449 4.0E-137 T 13-10-2018 IPR018721 Protein of unknown function DUF2252 RAM_07105 aa8f9c07cc312c6012ee3853e4c89198 188 Pfam PF00440 Bacterial regulatory proteins, tetR family 25 56 6.3E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_07105 aa8f9c07cc312c6012ee3853e4c89198 188 SUPERFAMILY SSF48498 81 151 4.89E-5 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_07105 aa8f9c07cc312c6012ee3853e4c89198 188 Gene3D G3DSA:1.10.357.10 1 182 1.4E-30 T 13-10-2018 RAM_07105 aa8f9c07cc312c6012ee3853e4c89198 188 SUPERFAMILY SSF46689 2 70 9.48E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_43640 20d4a63bb4a6f48c93e3f35008189ab3 400 SUPERFAMILY SSF47781 315 381 1.26E-6 T 13-10-2018 IPR010994 RuvA domain 2-like RAM_43640 20d4a63bb4a6f48c93e3f35008189ab3 400 SUPERFAMILY SSF50447 117 201 3.49E-5 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RAM_31935 8402ffa25c0a64d9a1ff736e45c2660d 786 Pfam PF04389 Peptidase family M28 126 313 1.4E-34 T 13-10-2018 IPR007484 Peptidase M28 RAM_31935 8402ffa25c0a64d9a1ff736e45c2660d 786 SUPERFAMILY SSF53187 53 320 4.19E-44 T 13-10-2018 RAM_31935 8402ffa25c0a64d9a1ff736e45c2660d 786 Gene3D G3DSA:3.40.630.10 54 322 2.6E-55 T 13-10-2018 RAM_13915 e77d4535569e4a9e27773451f6acad75 308 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 172 275 5.0E-15 T 13-10-2018 RAM_13915 e77d4535569e4a9e27773451f6acad75 308 Gene3D G3DSA:3.10.180.10 158 295 1.7E-25 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_13915 e77d4535569e4a9e27773451f6acad75 308 SUPERFAMILY SSF54593 170 306 4.48E-16 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_13915 e77d4535569e4a9e27773451f6acad75 308 SUPERFAMILY SSF55729 1 151 3.24E-35 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_13915 e77d4535569e4a9e27773451f6acad75 308 Pfam PF13302 Acetyltransferase (GNAT) domain 8 145 1.7E-25 T 13-10-2018 IPR000182 GNAT domain RAM_13915 e77d4535569e4a9e27773451f6acad75 308 Gene3D G3DSA:3.40.630.30 1 155 1.7E-38 T 13-10-2018 RAM_12215 060a7cd74db9b1701f9b378b5feb307e 325 Pfam PF04228 Putative neutral zinc metallopeptidase 136 316 4.9E-12 T 13-10-2018 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative RAM_34380 84533470156ffa9bfe0248fcb1cdb5da 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 4.9E-20 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_34380 84533470156ffa9bfe0248fcb1cdb5da 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 141 160 4.9E-20 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_34380 84533470156ffa9bfe0248fcb1cdb5da 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 197 217 4.9E-20 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_34380 84533470156ffa9bfe0248fcb1cdb5da 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 177 4.9E-20 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_34380 84533470156ffa9bfe0248fcb1cdb5da 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 69 80 4.9E-20 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_34380 84533470156ffa9bfe0248fcb1cdb5da 237 Gene3D G3DSA:3.40.50.720 2 233 3.4E-49 T 13-10-2018 RAM_34380 84533470156ffa9bfe0248fcb1cdb5da 237 SUPERFAMILY SSF51735 3 233 1.52E-47 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_34380 84533470156ffa9bfe0248fcb1cdb5da 237 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 10 231 3.0E-33 T 13-10-2018 RAM_26305 076b095221f57af8736a7419b43ed135 156 SUPERFAMILY SSF55874 64 148 6.85E-8 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_26305 076b095221f57af8736a7419b43ed135 156 Gene3D G3DSA:3.30.565.10 31 153 5.3E-22 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_07020 9f71cd8404f3a09b10a36772fa408590 134 SUPERFAMILY SSF69754 7 92 1.44E-5 T 13-10-2018 IPR036567 Ribosome hibernation promotion factor-like RAM_05900 4f9140a73c3c24fa6e60426ac1ba05b3 455 Pfam PF02447 GntP family permease 17 454 3.6E-145 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 RAM_05900 4f9140a73c3c24fa6e60426ac1ba05b3 455 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 17 455 9.1E-138 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 RAM_05900 4f9140a73c3c24fa6e60426ac1ba05b3 455 PIRSF PIRSF002746 12 455 2.0E-146 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 RAM_29340 fd175a8ed3a49db7c14d9cb10cfae55f 91 SUPERFAMILY SSF51905 5 66 2.46E-5 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_18260 e400c7609acaba8ca90d642c19956323 345 Gene3D G3DSA:3.40.50.180 1 193 2.9E-56 T 13-10-2018 IPR035909 Methylesterase CheB, C-terminal RAM_18260 e400c7609acaba8ca90d642c19956323 345 Pfam PF01339 CheB methylesterase 8 180 5.2E-50 T 13-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RAM_18260 e400c7609acaba8ca90d642c19956323 345 SUPERFAMILY SSF52738 5 187 4.71E-49 T 13-10-2018 IPR035909 Methylesterase CheB, C-terminal RAM_27300 27b1c9808a8a3db6310e9b3ae869c8e3 218 Pfam PF00440 Bacterial regulatory proteins, tetR family 27 71 1.9E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_27300 27b1c9808a8a3db6310e9b3ae869c8e3 218 SUPERFAMILY SSF46689 14 98 2.18E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_27300 27b1c9808a8a3db6310e9b3ae869c8e3 218 Gene3D G3DSA:1.10.357.10 17 217 7.4E-54 T 13-10-2018 RAM_33245 41763c1225f900e782ce37f539531d08 137 Pfam PF01740 STAS domain 27 126 1.2E-10 T 13-10-2018 IPR002645 STAS domain RAM_33245 41763c1225f900e782ce37f539531d08 137 SUPERFAMILY SSF52091 22 130 2.16E-17 T 13-10-2018 IPR036513 STAS domain superfamily RAM_33245 41763c1225f900e782ce37f539531d08 137 TIGRFAM TIGR00377 ant_ant_sig: anti-anti-sigma factor 21 121 4.3E-15 T 13-10-2018 IPR003658 Anti-sigma factor antagonist GO:0006355|GO:0045152 RAM_33245 41763c1225f900e782ce37f539531d08 137 Gene3D G3DSA:3.30.750.24 18 131 3.4E-24 T 13-10-2018 IPR036513 STAS domain superfamily RAM_23290 57b79aff3b75db31cbe1ffd8a7733e98 432 Pfam PF07690 Major Facilitator Superfamily 30 324 2.4E-30 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_23290 57b79aff3b75db31cbe1ffd8a7733e98 432 Gene3D G3DSA:1.20.1250.20 1 197 4.9E-19 T 13-10-2018 RAM_23290 57b79aff3b75db31cbe1ffd8a7733e98 432 Gene3D G3DSA:1.20.1250.20 222 421 5.6E-25 T 13-10-2018 RAM_23290 57b79aff3b75db31cbe1ffd8a7733e98 432 SUPERFAMILY SSF103473 3 414 7.72E-52 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_12200 4b588d42a00cd636859f258c9ecd18a8 160 Pfam PF02525 Flavodoxin-like fold 29 139 8.0E-21 T 13-10-2018 IPR003680 Flavodoxin-like fold RAM_12200 4b588d42a00cd636859f258c9ecd18a8 160 SUPERFAMILY SSF52218 29 141 1.09E-25 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RAM_12200 4b588d42a00cd636859f258c9ecd18a8 160 Gene3D G3DSA:3.40.50.360 4 158 2.6E-27 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RAM_26955 1cc44864af8d3f52768ad1d6c220e8d9 133 Pfam PF06993 Protein of unknown function (DUF1304) 11 131 5.0E-25 T 13-10-2018 IPR009732 Protein of unknown function DUF1304 RAM_36955 a21edad30cf351faeea6639426c8c383 213 Pfam PF00440 Bacterial regulatory proteins, tetR family 1 41 9.4E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_36955 a21edad30cf351faeea6639426c8c383 213 SUPERFAMILY SSF46689 1 60 6.67E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_36955 a21edad30cf351faeea6639426c8c383 213 Gene3D G3DSA:1.10.357.10 1 185 2.3E-26 T 13-10-2018 RAM_28910 66822af8833029b77d179c2e15c7ab36 788 SUPERFAMILY SSF53850 552 677 1.45E-10 T 13-10-2018 RAM_28910 66822af8833029b77d179c2e15c7ab36 788 Gene3D G3DSA:3.40.190.10 564 682 4.4E-7 T 13-10-2018 RAM_37015 4b0cad9520f0403382abee846a4d9965 233 SUPERFAMILY SSF53213 2 224 2.22E-9 T 13-10-2018 RAM_37015 4b0cad9520f0403382abee846a4d9965 233 Gene3D G3DSA:3.40.830.10 72 223 1.3E-20 T 13-10-2018 RAM_01495 f521363dcc37daeb908d30c660b2aaed 405 Pfam PF05977 Transmembrane secretion effector 1 398 4.9E-42 T 13-10-2018 IPR010290 Transmembrane secretion effector RAM_01495 f521363dcc37daeb908d30c660b2aaed 405 SUPERFAMILY SSF103473 2 395 6.28E-40 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_01495 f521363dcc37daeb908d30c660b2aaed 405 Gene3D G3DSA:1.20.1250.20 2 391 1.4E-34 T 13-10-2018 RAM_28695 dc776a1b0e9f72a773e9307b037c2d63 336 Gene3D G3DSA:3.40.50.1820 8 314 1.1E-32 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_28695 dc776a1b0e9f72a773e9307b037c2d63 336 SUPERFAMILY SSF53474 12 307 2.36E-27 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_12075 f77b6931f2b499d564952205f37a3c37 588 Gene3D G3DSA:3.20.20.80 53 405 5.4E-49 T 13-10-2018 RAM_12075 f77b6931f2b499d564952205f37a3c37 588 SUPERFAMILY SSF51445 35 392 1.19E-24 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_12075 f77b6931f2b499d564952205f37a3c37 588 Pfam PF00150 Cellulase (glycosyl hydrolase family 5) 44 391 1.8E-10 T 13-10-2018 IPR001547 Glycoside hydrolase, family 5 GO:0004553|GO:0005975 RAM_38285 76a3f55827dc55f33d74fb9ec0aeda6e 241 SUPERFAMILY SSF53597 3 217 1.44E-24 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RAM_38285 76a3f55827dc55f33d74fb9ec0aeda6e 241 Pfam PF01872 RibD C-terminal domain 3 187 1.3E-18 T 13-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 RAM_38285 76a3f55827dc55f33d74fb9ec0aeda6e 241 Gene3D G3DSA:3.40.430.10 1 216 3.8E-50 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RAM_27540 30d5bbff2a6b96d513d1e8bcc665f6c7 461 Gene3D G3DSA:3.90.79.40 299 461 2.2E-51 T 13-10-2018 IPR038153 NDP-hexose 2,3-dehydratase-like superfamily KEGG: 00523+4.2.1.159 RAM_27540 30d5bbff2a6b96d513d1e8bcc665f6c7 461 Gene3D G3DSA:3.90.79.40 71 232 3.7E-63 T 13-10-2018 IPR038153 NDP-hexose 2,3-dehydratase-like superfamily KEGG: 00523+4.2.1.159 RAM_27540 30d5bbff2a6b96d513d1e8bcc665f6c7 461 Pfam PF03559 NDP-hexose 2,3-dehydratase 256 457 4.6E-72 T 13-10-2018 IPR005212 NDP-hexose 2,3-dehydratase KEGG: 00523+4.2.1.159 RAM_27540 30d5bbff2a6b96d513d1e8bcc665f6c7 461 Pfam PF03559 NDP-hexose 2,3-dehydratase 22 223 1.3E-84 T 13-10-2018 IPR005212 NDP-hexose 2,3-dehydratase KEGG: 00523+4.2.1.159 RAM_29360 b6b2a675a3e901cb87dd1083431cf7f6 394 Gene3D G3DSA:3.30.110.40 18 70 8.9E-6 T 13-10-2018 IPR036868 TusA-like domain superfamily RAM_29360 b6b2a675a3e901cb87dd1083431cf7f6 394 SUPERFAMILY SSF47240 160 327 4.37E-30 T 13-10-2018 IPR009078 Ferritin-like superfamily RAM_29360 b6b2a675a3e901cb87dd1083431cf7f6 394 SUPERFAMILY SSF64307 20 60 3.27E-6 T 13-10-2018 IPR036868 TusA-like domain superfamily RAM_29360 b6b2a675a3e901cb87dd1083431cf7f6 394 Gene3D G3DSA:1.20.1260.10 159 386 1.0E-12 T 13-10-2018 IPR012347 Ferritin-like RAM_07255 e130515a9ba83e76889e0bf008608a40 140 Pfam PF03259 Roadblock/LC7 domain 8 101 5.3E-23 T 13-10-2018 IPR004942 Roadblock/LAMTOR2 domain RAM_07255 e130515a9ba83e76889e0bf008608a40 140 Gene3D G3DSA:3.30.450.30 5 131 2.3E-42 T 13-10-2018 RAM_07255 e130515a9ba83e76889e0bf008608a40 140 SMART SM00960 9 101 1.1E-26 T 13-10-2018 IPR004942 Roadblock/LAMTOR2 domain RAM_07255 e130515a9ba83e76889e0bf008608a40 140 SUPERFAMILY SSF103196 2 130 1.38E-34 T 13-10-2018 RAM_42230 e798108bb32bbce2c7ad2c4d91a33c55 198 Gene3D G3DSA:3.40.50.150 16 142 1.8E-15 T 13-10-2018 RAM_42230 e798108bb32bbce2c7ad2c4d91a33c55 198 Pfam PF13649 Methyltransferase domain 40 131 4.2E-7 T 13-10-2018 RAM_42230 e798108bb32bbce2c7ad2c4d91a33c55 198 SUPERFAMILY SSF53335 13 177 1.75E-20 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_01365 ae871fff47972031e4bc4b3a1115ceb7 213 SUPERFAMILY SSF55729 118 198 1.12E-8 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_01365 ae871fff47972031e4bc4b3a1115ceb7 213 Gene3D G3DSA:3.40.630.30 106 211 4.1E-10 T 13-10-2018 RAM_14720 7890342a0be78a25d9ca4c39d9d7539e 426 SUPERFAMILY SSF55073 270 423 1.26E-32 T 13-10-2018 IPR029787 Nucleotide cyclase RAM_14720 7890342a0be78a25d9ca4c39d9d7539e 426 Pfam PF00990 Diguanylate cyclase, GGDEF domain 288 418 1.7E-26 T 13-10-2018 IPR000160 GGDEF domain RAM_14720 7890342a0be78a25d9ca4c39d9d7539e 426 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 286 422 1.0E-33 T 13-10-2018 IPR000160 GGDEF domain RAM_14720 7890342a0be78a25d9ca4c39d9d7539e 426 Gene3D G3DSA:3.30.70.270 259 425 7.9E-39 T 13-10-2018 RAM_14720 7890342a0be78a25d9ca4c39d9d7539e 426 SMART SM00267 240 422 1.8E-27 T 13-10-2018 IPR000160 GGDEF domain RAM_19590 1b13dfccad13989dd77e04ddb25326e8 376 Pfam PF04909 Amidohydrolase 101 358 4.1E-24 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RAM_19590 1b13dfccad13989dd77e04ddb25326e8 376 SUPERFAMILY SSF51556 10 365 2.04E-60 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_19590 1b13dfccad13989dd77e04ddb25326e8 376 Gene3D G3DSA:3.20.20.140 5 364 2.9E-76 T 13-10-2018 RAM_05360 7723ce8be7f72797869f61476c43f618 386 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 7 252 7.8E-88 T 13-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 RAM_05360 7723ce8be7f72797869f61476c43f618 386 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 262 371 1.1E-25 T 13-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 RAM_06250 8d5a432e0526bc21700cd100283a54f8 242 Pfam PF13829 Domain of unknown function (DUF4191) 19 233 3.1E-85 T 13-10-2018 IPR025445 Protein of unknown function DUF4191 RAM_06250 8d5a432e0526bc21700cd100283a54f8 242 ProDom PD037701 MEMBRANE INTEGRAL TRANSMEMBRANE RV2219/MT2276 NARROWLY PROBABLE PRECURSOR SIGNAL MLCB22.21 27 227 2.0E-62 T 13-10-2018 RAM_28270 a73e849ee8ed8da313fbaee08269eb4d 463 Gene3D G3DSA:3.50.50.60 3 373 5.7E-21 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_28270 a73e849ee8ed8da313fbaee08269eb4d 463 SUPERFAMILY SSF51905 7 353 7.62E-25 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_33645 a339002d73c91535668f193d94ac427b 53 Pfam PF07295 Zinc-ribbon containing domain 4 42 2.0E-6 T 13-10-2018 IPR009912 Zinc-ribbon containing domain RAM_15550 0db8215ab7730535e989dcd91a54bcb1 145 Gene3D G3DSA:2.60.40.790 1 134 3.0E-28 T 13-10-2018 IPR008978 HSP20-like chaperone RAM_15550 0db8215ab7730535e989dcd91a54bcb1 145 SUPERFAMILY SSF49764 7 133 4.19E-30 T 13-10-2018 IPR008978 HSP20-like chaperone RAM_15550 0db8215ab7730535e989dcd91a54bcb1 145 Pfam PF00011 Hsp20/alpha crystallin family 37 134 5.2E-20 T 13-10-2018 IPR002068 Alpha crystallin/Hsp20 domain RAM_06180 f46ece112ecfa55009aa167e4407097a 209 Gene3D G3DSA:2.50.20.20 19 204 1.1E-29 T 13-10-2018 RAM_06180 f46ece112ecfa55009aa167e4407097a 209 Pfam PF07161 LppX_LprAFG lipoprotein 31 204 3.8E-21 T 13-10-2018 IPR009830 LppX/LprAFG lipoprotein family RAM_06180 f46ece112ecfa55009aa167e4407097a 209 ProDom PD017293 LIPOPROTEIN MEMBRANE PRECURSOR PALMITATE SIGNAL ANTIGEN LPRG LPPX P27 LPRA 14 177 8.0E-11 T 13-10-2018 IPR009830 LppX/LprAFG lipoprotein family RAM_06180 f46ece112ecfa55009aa167e4407097a 209 SUPERFAMILY SSF89392 25 183 2.08E-21 T 13-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX RAM_25080 6b3ca2a582bcb9f301b6b058acbb5e91 195 SMART SM00418 14 94 1.7E-6 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_25080 6b3ca2a582bcb9f301b6b058acbb5e91 195 Pfam PF12840 Helix-turn-helix domain 14 70 8.1E-13 T 13-10-2018 RAM_25080 6b3ca2a582bcb9f301b6b058acbb5e91 195 SUPERFAMILY SSF46785 9 147 2.16E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_25080 6b3ca2a582bcb9f301b6b058acbb5e91 195 Gene3D G3DSA:1.10.10.10 10 104 4.5E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_30105 bb1c8efbabf05c277efeb3356859fd44 325 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 63 1.3E-16 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RAM_30105 bb1c8efbabf05c277efeb3356859fd44 325 SUPERFAMILY SSF46785 2 88 3.02E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_30105 bb1c8efbabf05c277efeb3356859fd44 325 Gene3D G3DSA:1.10.10.10 1 92 1.1E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_40330 0c921bfb2c467810c14e249708f0ad4b 520 Pfam PF03703 Bacterial PH domain 426 498 8.5E-6 T 13-10-2018 IPR005182 Domain of unknown function DUF304 RAM_40330 0c921bfb2c467810c14e249708f0ad4b 520 Pfam PF03703 Bacterial PH domain 82 163 4.2E-10 T 13-10-2018 IPR005182 Domain of unknown function DUF304 RAM_40330 0c921bfb2c467810c14e249708f0ad4b 520 PIRSF PIRSF026631 21 507 1.8E-68 T 13-10-2018 IPR014529 Uncharacterised conserved protein UCP026631 RAM_11370 234409cf4a37f1a8477d75c0fe1eb6ae 102 SUPERFAMILY SSF140453 1 84 7.32E-11 T 13-10-2018 IPR036689 ESAT-6-like superfamily RAM_11370 234409cf4a37f1a8477d75c0fe1eb6ae 102 Gene3D G3DSA:1.10.287.1060 1 86 4.2E-11 T 13-10-2018 RAM_11370 234409cf4a37f1a8477d75c0fe1eb6ae 102 Pfam PF06013 Proteins of 100 residues with WXG 3 75 2.2E-6 T 13-10-2018 IPR010310 Type VII secretion system ESAT-6-like RAM_21375 b4d69461cc4cb7d875111ba4b3befc44 306 Gene3D G3DSA:3.90.920.30 22 304 1.8E-97 T 13-10-2018 RAM_21375 b4d69461cc4cb7d875111ba4b3befc44 306 TIGRFAM TIGR02778 ligD_pol: DNA ligase D, polymerase domain 16 266 4.7E-79 T 13-10-2018 IPR014145 DNA ligase D, polymerase domain RAM_47705 cf9e073abf7f3ba603ab891604b03bc8 263 Pfam PF14011 EspG family 22 254 3.6E-42 T 13-10-2018 IPR025734 EspG family RAM_29740 224e50855f6c7af2e60dffe8f2aa3dc2 127 Pfam PF02371 Transposase IS116/IS110/IS902 family 60 127 8.6E-13 T 13-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 RAM_01000 ac381a84d4d676792ef9cfd0f8752035 161 Gene3D G3DSA:3.10.450.50 2 125 1.1E-28 T 13-10-2018 RAM_01000 ac381a84d4d676792ef9cfd0f8752035 161 Pfam PF12680 SnoaL-like domain 4 98 1.8E-6 T 13-10-2018 IPR037401 SnoaL-like domain RAM_01000 ac381a84d4d676792ef9cfd0f8752035 161 SUPERFAMILY SSF54427 4 109 2.43E-12 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_15510 589fdca4822740c06342177692ef61b0 396 SUPERFAMILY SSF81606 193 346 4.18E-5 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_15510 589fdca4822740c06342177692ef61b0 396 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 206 392 2.1E-32 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_15510 589fdca4822740c06342177692ef61b0 396 SMART SM00331 177 392 6.2E-17 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_15510 589fdca4822740c06342177692ef61b0 396 Gene3D G3DSA:3.60.40.10 109 394 8.5E-43 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_20225 6936b378e5f41a452839b4bd999af955 129 Pfam PF04542 Sigma-70 region 2 84 125 8.8E-6 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_20225 6936b378e5f41a452839b4bd999af955 129 Gene3D G3DSA:1.10.1740.10 64 129 1.3E-9 T 13-10-2018 RAM_20225 6936b378e5f41a452839b4bd999af955 129 SUPERFAMILY SSF88946 66 126 1.88E-10 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_27490 4490c16c8c48451539accb3b6705ecb7 505 SUPERFAMILY SSF54373 259 439 3.45E-12 T 13-10-2018 RAM_27490 4490c16c8c48451539accb3b6705ecb7 505 Gene3D G3DSA:3.50.50.60 393 502 2.5E-15 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_27490 4490c16c8c48451539accb3b6705ecb7 505 SUPERFAMILY SSF51905 5 499 1.42E-40 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_27490 4490c16c8c48451539accb3b6705ecb7 505 Pfam PF00732 GMC oxidoreductase 210 297 4.7E-7 T 13-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 RAM_27490 4490c16c8c48451539accb3b6705ecb7 505 Pfam PF05199 GMC oxidoreductase 381 491 4.2E-19 T 13-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 RAM_18810 bd5173438a81c9ca34f6204f05b3c9c5 373 Gene3D G3DSA:3.30.565.10 249 373 7.4E-20 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_18810 bd5173438a81c9ca34f6204f05b3c9c5 373 Pfam PF07730 Histidine kinase 179 246 2.5E-15 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_18810 bd5173438a81c9ca34f6204f05b3c9c5 373 SUPERFAMILY SSF55874 258 359 3.01E-6 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_06800 1776b47d9dfc3a9621af7decb189359d 341 Gene3D G3DSA:3.40.1190.20 6 308 1.9E-55 T 13-10-2018 IPR029056 Ribokinase-like RAM_06800 1776b47d9dfc3a9621af7decb189359d 341 SUPERFAMILY SSF53613 9 302 2.49E-51 T 13-10-2018 IPR029056 Ribokinase-like RAM_06800 1776b47d9dfc3a9621af7decb189359d 341 Pfam PF00294 pfkB family carbohydrate kinase 148 292 1.6E-25 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB RAM_46305 4c5bf0339bb606f8a16d492ab8ea9322 336 Pfam PF02361 Cobalt transport protein 6 195 4.1E-12 T 13-10-2018 IPR003339 ABC/ECF transporter, transmembrane component RAM_15845 d3b658476ace8e44b491f815fae4308b 203 Pfam PF12277 Protein of unknown function (DUF3618) 3 46 1.0E-12 T 13-10-2018 IPR022062 Protein of unknown function DUF3618 RAM_16570 8c897a6f7528dc47ac580809aae85ae6 234 Pfam PF12697 Alpha/beta hydrolase family 6 224 9.5E-20 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_16570 8c897a6f7528dc47ac580809aae85ae6 234 SUPERFAMILY SSF53474 2 228 3.19E-30 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_16570 8c897a6f7528dc47ac580809aae85ae6 234 Gene3D G3DSA:3.40.50.1820 1 232 9.6E-43 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_22815 6ad02cd0f9724f30e7fa185b6c4133d4 152 Pfam PF01047 MarR family 40 92 1.1E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_22815 6ad02cd0f9724f30e7fa185b6c4133d4 152 SUPERFAMILY SSF46785 10 143 4.34E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_22815 6ad02cd0f9724f30e7fa185b6c4133d4 152 SMART SM00347 27 127 3.7E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_22815 6ad02cd0f9724f30e7fa185b6c4133d4 152 Gene3D G3DSA:1.10.10.10 7 142 6.1E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_18365 52e74211db338b7ab26447408714d33a 80 Gene3D G3DSA:1.20.58.2000 1 61 5.8E-8 T 13-10-2018 RAM_01720 72b7a2aa6efc65ecdabedce59a06b071 136 Pfam PF13279 Thioesterase-like superfamily 13 128 7.1E-11 T 13-10-2018 RAM_01720 72b7a2aa6efc65ecdabedce59a06b071 136 Gene3D G3DSA:3.10.129.10 1 135 3.1E-43 T 13-10-2018 RAM_01720 72b7a2aa6efc65ecdabedce59a06b071 136 SUPERFAMILY SSF54637 3 134 8.62E-35 T 13-10-2018 IPR029069 HotDog domain superfamily RAM_20790 4401ddfc4dd27f774313b7a496bc2b21 210 Pfam PF01066 CDP-alcohol phosphatidyltransferase 26 90 8.2E-7 T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RAM_20790 4401ddfc4dd27f774313b7a496bc2b21 210 Gene3D G3DSA:1.20.120.1760 10 203 2.3E-24 T 13-10-2018 RAM_02945 dde48e3f91ed66b0aa672b92e69ab2d0 436 PIRSF PIRSF000337 1 436 1.8E-143 T 13-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 RAM_02945 dde48e3f91ed66b0aa672b92e69ab2d0 436 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 15 434 1.3E-125 T 13-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 RAM_02945 dde48e3f91ed66b0aa672b92e69ab2d0 436 SUPERFAMILY SSF51679 1 436 2.88E-105 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_02945 dde48e3f91ed66b0aa672b92e69ab2d0 436 Pfam PF00296 Luciferase-like monooxygenase 24 389 6.2E-55 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_32160 555c08a696c7e62bfe5a79b4247b2cfc 133 Pfam PF11239 Protein of unknown function (DUF3040) 1 87 7.6E-31 T 13-10-2018 IPR021401 Protein of unknown function DUF3040 RAM_39970 be955c26a9bef49b811e248c39629f3c 261 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 29 255 2.2E-37 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RAM_39970 be955c26a9bef49b811e248c39629f3c 261 Gene3D G3DSA:1.20.120.220 84 261 2.2E-29 T 13-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RAM_39970 be955c26a9bef49b811e248c39629f3c 261 Hamap MF_01393 ATP synthase subunit a [atpB]. 17 260 12.398 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RAM_39970 be955c26a9bef49b811e248c39629f3c 261 Pfam PF00119 ATP synthase A chain 34 253 7.4E-49 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RAM_39970 be955c26a9bef49b811e248c39629f3c 261 PRINTS PR00123 ATP synthase A subunit signature 240 255 8.3E-17 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RAM_39970 be955c26a9bef49b811e248c39629f3c 261 PRINTS PR00123 ATP synthase A subunit signature 178 200 8.3E-17 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RAM_39970 be955c26a9bef49b811e248c39629f3c 261 PRINTS PR00123 ATP synthase A subunit signature 92 108 8.3E-17 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RAM_39970 be955c26a9bef49b811e248c39629f3c 261 SUPERFAMILY SSF81336 84 254 4.32E-31 T 13-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RAM_41225 2fed38990a70ab0f70425270a1bb0751 593 ProSitePatterns PS00211 ABC transporters family signature. 465 479 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_41225 2fed38990a70ab0f70425270a1bb0751 593 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 544 576 0.0046 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RAM_41225 2fed38990a70ab0f70425270a1bb0751 593 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 246 278 0.0047 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RAM_41225 2fed38990a70ab0f70425270a1bb0751 593 SUPERFAMILY SSF52540 320 564 3.27E-72 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_41225 2fed38990a70ab0f70425270a1bb0751 593 Gene3D G3DSA:3.40.50.300 317 590 6.1E-88 T 13-10-2018 RAM_41225 2fed38990a70ab0f70425270a1bb0751 593 Gene3D G3DSA:3.40.50.300 15 316 4.7E-85 T 13-10-2018 RAM_41225 2fed38990a70ab0f70425270a1bb0751 593 Pfam PF00005 ABC transporter 342 493 2.6E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_41225 2fed38990a70ab0f70425270a1bb0751 593 SUPERFAMILY SSF52540 17 266 8.8E-67 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_41225 2fed38990a70ab0f70425270a1bb0751 593 SMART SM00382 46 244 1.7E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_41225 2fed38990a70ab0f70425270a1bb0751 593 SMART SM00382 350 542 5.3E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_41225 2fed38990a70ab0f70425270a1bb0751 593 Pfam PF00005 ABC transporter 38 194 7.3E-25 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_29015 b7aadd127047c3a9719aaf13c3871cf7 519 SUPERFAMILY SSF53474 65 489 9.13E-21 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_29015 b7aadd127047c3a9719aaf13c3871cf7 519 Pfam PF08386 TAP-like protein 402 505 3.6E-20 T 13-10-2018 IPR013595 Peptidase S33 tripeptidyl aminopeptidase-like, C-terminal RAM_29015 b7aadd127047c3a9719aaf13c3871cf7 519 Pfam PF00561 alpha/beta hydrolase fold 68 213 1.6E-21 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_09715 4267c7a6d990def2473733ed14095905 384 ProDom PD120223 SCO3432 GENE ML2604 GP79 GP77 CGL2230 MB0190 178 359 2.0E-32 T 13-10-2018 RAM_09715 4267c7a6d990def2473733ed14095905 384 Pfam PF10979 Protein of unknown function (DUF2786) 177 214 6.5E-16 T 13-10-2018 IPR024498 Domain of unknown function DUF2786 RAM_42810 2062faf1a5b94e490884344476037b92 371 Pfam PF05175 Methyltransferase small domain 165 307 9.4E-11 T 13-10-2018 IPR007848 Methyltransferase small domain GO:0008168 RAM_42810 2062faf1a5b94e490884344476037b92 371 SUPERFAMILY SSF53335 152 308 4.99E-30 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_42810 2062faf1a5b94e490884344476037b92 371 Gene3D G3DSA:3.40.50.150 176 352 5.6E-26 T 13-10-2018 RAM_41580 4f4e71aae3397b015b38cf3ae8b6f5de 270 SUPERFAMILY SSF56281 57 246 8.26E-25 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_41580 4f4e71aae3397b015b38cf3ae8b6f5de 270 Gene3D G3DSA:3.60.15.10 60 246 2.3E-11 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_41580 4f4e71aae3397b015b38cf3ae8b6f5de 270 SMART SM00849 73 242 9.4E-6 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_41290 f92bbf35d30fc4671ab8bd17e0b405ec 365 Pfam PF03888 MucB/RseB N-terminal domain 86 236 4.1E-5 T 13-10-2018 IPR033434 MucB/RseB, N-terminal RAM_41290 f92bbf35d30fc4671ab8bd17e0b405ec 365 Gene3D G3DSA:2.50.20.10 79 254 3.3E-23 T 13-10-2018 RAM_41290 f92bbf35d30fc4671ab8bd17e0b405ec 365 SUPERFAMILY SSF89392 96 253 7.06E-14 T 13-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX RAM_38370 d43ffea625dd126c9415d28190a38c3b 179 SUPERFAMILY SSF52540 1 168 7.65E-16 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_38370 d43ffea625dd126c9415d28190a38c3b 179 Pfam PF03029 Conserved hypothetical ATP binding protein 1 169 4.1E-24 T 13-10-2018 IPR004130 GPN-loop GTPase RAM_38370 d43ffea625dd126c9415d28190a38c3b 179 Gene3D G3DSA:3.40.50.300 1 173 3.2E-12 T 13-10-2018 RAM_41240 f305cbba4f8b7671385863ef7339dbed 338 SUPERFAMILY SSF161098 95 319 5.4E-16 T 13-10-2018 IPR035906 MetI-like superfamily RAM_41240 f305cbba4f8b7671385863ef7339dbed 338 Gene3D G3DSA:1.10.3720.10 90 329 2.4E-19 T 13-10-2018 IPR035906 MetI-like superfamily RAM_41240 f305cbba4f8b7671385863ef7339dbed 338 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 118 336 1.8E-40 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_05430 769066d40c1a86ac3a8daf31486afc96 216 Gene3D G3DSA:1.10.10.1320 10 104 5.4E-6 T 13-10-2018 RAM_13055 06e8f872b5e74cb25b6932e4fe289fea 141 Pfam PF02580 D-Tyr-tRNA(Tyr) deacylase 2 140 7.6E-48 T 13-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 RAM_13055 06e8f872b5e74cb25b6932e4fe289fea 141 Gene3D G3DSA:3.50.80.10 1 141 1.0E-40 T 13-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily RAM_13055 06e8f872b5e74cb25b6932e4fe289fea 141 TIGRFAM TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 3 141 9.9E-39 T 13-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 RAM_13055 06e8f872b5e74cb25b6932e4fe289fea 141 Hamap MF_00518 D-aminoacyl-tRNA deacylase [dtd]. 1 141 28.673 T 13-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 RAM_13055 06e8f872b5e74cb25b6932e4fe289fea 141 SUPERFAMILY SSF69500 2 140 2.35E-42 T 13-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily RAM_18305 176d38e7adbe588173a3160af65f4df1 331 SUPERFAMILY SSF53474 55 317 5.01E-20 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_18305 176d38e7adbe588173a3160af65f4df1 331 Gene3D G3DSA:3.40.50.1820 35 321 7.7E-20 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_32215 fe602f6a6ba95055c50463a9b1c31e40 152 SMART SM00530 12 67 4.9E-8 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_32215 fe602f6a6ba95055c50463a9b1c31e40 152 Gene3D G3DSA:1.10.260.40 3 82 9.0E-16 T 13-10-2018 RAM_32215 fe602f6a6ba95055c50463a9b1c31e40 152 Pfam PF13560 Helix-turn-helix domain 8 69 7.4E-12 T 13-10-2018 RAM_32215 fe602f6a6ba95055c50463a9b1c31e40 152 SUPERFAMILY SSF47413 3 70 2.63E-13 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_00210 d10698b2044a356f7a8dca5d3bb35e50 244 Pfam PF01061 ABC-2 type transporter 7 203 1.7E-23 T 13-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 RAM_23990 c102be020975c87fd6ca63d3f5419fc0 546 Gene3D G3DSA:1.20.140.10 287 441 7.4E-31 T 13-10-2018 RAM_23990 c102be020975c87fd6ca63d3f5419fc0 546 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 287 441 1.7E-25 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RAM_23990 c102be020975c87fd6ca63d3f5419fc0 546 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 400 419 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RAM_23990 c102be020975c87fd6ca63d3f5419fc0 546 SUPERFAMILY SSF47203 292 445 2.09E-37 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RAM_23990 c102be020975c87fd6ca63d3f5419fc0 546 SUPERFAMILY SSF56645 54 296 5.92E-38 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RAM_23990 c102be020975c87fd6ca63d3f5419fc0 546 Gene3D G3DSA:2.40.110.20 127 286 2.5E-57 T 13-10-2018 RAM_23990 c102be020975c87fd6ca63d3f5419fc0 546 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 177 277 1.4E-14 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RAM_23555 2b2cf38f8bdc19a2ac91b7afcc22b1db 440 Pfam PF01546 Peptidase family M20/M25/M40 84 438 9.9E-35 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 RAM_23555 2b2cf38f8bdc19a2ac91b7afcc22b1db 440 SUPERFAMILY SSF53187 6 438 2.2E-52 T 13-10-2018 RAM_23555 2b2cf38f8bdc19a2ac91b7afcc22b1db 440 SUPERFAMILY SSF55031 204 325 1.28E-10 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain RAM_23555 2b2cf38f8bdc19a2ac91b7afcc22b1db 440 Pfam PF07687 Peptidase dimerisation domain 201 323 5.8E-14 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain RAM_23555 2b2cf38f8bdc19a2ac91b7afcc22b1db 440 Gene3D G3DSA:3.40.630.10 6 207 1.9E-46 T 13-10-2018 RAM_15780 13d43885c553eb5aaf86aaaaf813dcdd 66 SMART SM00923 1 48 2.1E-20 T 13-10-2018 IPR005153 MbtH-like domain RAM_15780 13d43885c553eb5aaf86aaaaf813dcdd 66 SUPERFAMILY SSF160582 3 64 3.4E-27 T 13-10-2018 IPR038020 MbtH-like domain superfamily RAM_15780 13d43885c553eb5aaf86aaaaf813dcdd 66 Gene3D G3DSA:3.90.820.10 1 66 1.6E-30 T 13-10-2018 RAM_15780 13d43885c553eb5aaf86aaaaf813dcdd 66 Pfam PF03621 MbtH-like protein 2 48 1.1E-22 T 13-10-2018 IPR005153 MbtH-like domain RAM_33905 8995543af9f72286376c8050ee9043b3 121 Gene3D G3DSA:1.10.10.10 19 121 6.7E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_33905 8995543af9f72286376c8050ee9043b3 121 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 71 86 7.3E-15 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_33905 8995543af9f72286376c8050ee9043b3 121 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 39 54 7.3E-15 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_33905 8995543af9f72286376c8050ee9043b3 121 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 58 69 7.3E-15 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_33905 8995543af9f72286376c8050ee9043b3 121 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 86 101 7.3E-15 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_33905 8995543af9f72286376c8050ee9043b3 121 Pfam PF01022 Bacterial regulatory protein, arsR family 45 89 4.2E-13 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_33905 8995543af9f72286376c8050ee9043b3 121 SMART SM00418 37 115 3.7E-26 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_33905 8995543af9f72286376c8050ee9043b3 121 SUPERFAMILY SSF46785 26 110 3.53E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_12220 3c3ff735bf4ec5ed16b2995be199a22b 193 Gene3D G3DSA:1.20.120.450 5 132 4.0E-8 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_12220 3c3ff735bf4ec5ed16b2995be199a22b 193 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 11 186 8.5E-23 T 13-10-2018 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type RAM_12220 3c3ff735bf4ec5ed16b2995be199a22b 193 TIGRFAM TIGR03086 TIGR03086: TIGR03086 family protein 12 186 1.1E-44 T 13-10-2018 IPR017520 Conserved hypothetical protein CHP03086 RAM_12220 3c3ff735bf4ec5ed16b2995be199a22b 193 SUPERFAMILY SSF109854 6 135 8.97E-17 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_12220 3c3ff735bf4ec5ed16b2995be199a22b 193 Pfam PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain 17 129 3.2E-14 T 13-10-2018 IPR024344 Mycothiol-dependent maleylpyruvate isomerase, metal-binding domain GO:0046872 RAM_08365 244d02d9a16b0e32dd60237dedd09822 423 Pfam PF00534 Glycosyl transferases group 1 214 372 2.9E-40 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 RAM_08365 244d02d9a16b0e32dd60237dedd09822 423 Pfam PF13439 Glycosyltransferase Family 4 13 194 3.2E-33 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 RAM_08365 244d02d9a16b0e32dd60237dedd09822 423 SUPERFAMILY SSF53756 3 394 9.23E-96 T 13-10-2018 RAM_08365 244d02d9a16b0e32dd60237dedd09822 423 Gene3D G3DSA:3.40.50.2000 193 375 2.0E-102 T 13-10-2018 RAM_08365 244d02d9a16b0e32dd60237dedd09822 423 Gene3D G3DSA:3.40.50.2000 3 391 2.0E-102 T 13-10-2018 RAM_32005 8eca4fe476fa4cc1078f3e413e7c2fce 247 SUPERFAMILY SSF54637 89 241 5.74E-8 T 13-10-2018 IPR029069 HotDog domain superfamily RAM_32005 8eca4fe476fa4cc1078f3e413e7c2fce 247 Gene3D G3DSA:3.10.129.10 101 246 8.2E-9 T 13-10-2018 RAM_09310 ab61415b7018c8df72275841fd835864 283 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 74 279 7.6E-70 T 13-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 RAM_09310 ab61415b7018c8df72275841fd835864 283 Gene3D G3DSA:3.90.850.10 69 283 2.1E-80 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 RAM_09310 ab61415b7018c8df72275841fd835864 283 SUPERFAMILY SSF56529 64 280 4.58E-76 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 RAM_40000 e0d794c06a4e150525cf3ed3d8ce8d7b 334 Gene3D G3DSA:3.90.550.10 3 222 7.3E-28 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_40000 e0d794c06a4e150525cf3ed3d8ce8d7b 334 SUPERFAMILY SSF53448 9 184 1.9E-30 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_40000 e0d794c06a4e150525cf3ed3d8ce8d7b 334 Pfam PF00535 Glycosyl transferase family 2 13 175 9.4E-25 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RAM_03105 912ecd8f285c96642d215e652d18aaaf 394 Pfam PF02470 MlaD protein 38 111 3.1E-13 T 13-10-2018 IPR003399 Mce/MlaD RAM_03105 912ecd8f285c96642d215e652d18aaaf 394 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 15 299 2.7E-65 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_28785 5f4d8712694a775c2e49444f1112385f 423 Pfam PF06441 Epoxide hydrolase N terminus 38 143 7.0E-34 T 13-10-2018 IPR010497 Epoxide hydrolase, N-terminal Reactome: R-HSA-211945 RAM_28785 5f4d8712694a775c2e49444f1112385f 423 SUPERFAMILY SSF53474 33 421 1.93E-85 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_28785 5f4d8712694a775c2e49444f1112385f 423 PRINTS PR00412 Epoxide hydrolase signature 364 380 1.3E-8 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_28785 5f4d8712694a775c2e49444f1112385f 423 PRINTS PR00412 Epoxide hydrolase signature 134 152 1.3E-8 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_28785 5f4d8712694a775c2e49444f1112385f 423 PRINTS PR00412 Epoxide hydrolase signature 396 418 1.3E-8 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_28785 5f4d8712694a775c2e49444f1112385f 423 PRINTS PR00412 Epoxide hydrolase signature 163 178 1.3E-8 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_28785 5f4d8712694a775c2e49444f1112385f 423 PIRSF PIRSF001112 7 423 1.2E-133 T 13-10-2018 IPR016292 Epoxide hydrolase GO:0033961 Reactome: R-HSA-211945 RAM_28785 5f4d8712694a775c2e49444f1112385f 423 Gene3D G3DSA:3.40.50.1820 36 423 8.9E-121 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_32550 34402ef7f39a90564c2cc648cce2103c 216 Gene3D G3DSA:1.10.3630.10 1 210 2.0E-7 T 13-10-2018 IPR038261 Golgi phosphoprotein 3-like domain superfamily RAM_32550 34402ef7f39a90564c2cc648cce2103c 216 Pfam PF05719 Golgi phosphoprotein 3 (GPP34) 6 199 2.2E-38 T 13-10-2018 IPR008628 Golgi phosphoprotein 3-like GO:0070273 RAM_09430 a1cd1183e09036fb22330a87643555c9 252 SUPERFAMILY SSF100950 5 247 6.98E-70 T 13-10-2018 IPR037171 NagB/RpiA transferase-like RAM_09430 a1cd1183e09036fb22330a87643555c9 252 Gene3D G3DSA:3.40.1080.10 2 250 3.4E-82 T 13-10-2018 RAM_09430 a1cd1183e09036fb22330a87643555c9 252 SMART SM00882 9 219 8.2E-34 T 13-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 RAM_09430 a1cd1183e09036fb22330a87643555c9 252 Pfam PF01144 Coenzyme A transferase 9 214 4.6E-38 T 13-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 RAM_28445 f9d60e69a01ba00b74e539736f2132a1 218 SUPERFAMILY SSF53271 1 208 5.58E-38 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like RAM_28445 f9d60e69a01ba00b74e539736f2132a1 218 Gene3D G3DSA:3.40.50.2020 3 202 1.8E-54 T 13-10-2018 RAM_28445 f9d60e69a01ba00b74e539736f2132a1 218 Pfam PF00156 Phosphoribosyl transferase domain 13 188 3.7E-16 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 RAM_28445 f9d60e69a01ba00b74e539736f2132a1 218 Gene3D G3DSA:3.30.1310.20 53 115 1.8E-54 T 13-10-2018 RAM_04930 5eb09ee87100bc4ebe9eb7feec9bffde 112 SUPERFAMILY SSF54593 3 111 2.61E-19 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_04930 5eb09ee87100bc4ebe9eb7feec9bffde 112 Gene3D G3DSA:3.10.180.10 2 111 2.7E-14 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_18885 080dc58743efbb2ca09f6d9797d1c015 316 Gene3D G3DSA:3.40.50.1820 2 316 1.6E-83 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_18885 080dc58743efbb2ca09f6d9797d1c015 316 Pfam PF07859 alpha/beta hydrolase fold 86 292 1.0E-58 T 13-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 RAM_18885 080dc58743efbb2ca09f6d9797d1c015 316 SUPERFAMILY SSF53474 43 314 5.22E-64 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_00735 54b7dd5d7821a3265cb710c16696ac2a 104 SUPERFAMILY SSF56399 4 100 1.73E-21 T 13-10-2018 RAM_00735 54b7dd5d7821a3265cb710c16696ac2a 104 Pfam PF06108 Protein of unknown function (DUF952) 3 84 1.2E-20 T 13-10-2018 IPR009297 Protein of unknown function DUF952 RAM_00735 54b7dd5d7821a3265cb710c16696ac2a 104 Gene3D G3DSA:3.20.170.20 1 103 1.1E-26 T 13-10-2018 RAM_45670 23ea685a7b7cf92ca9a167dbec1131ab 548 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 77 468 2.6E-75 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain RAM_45670 23ea685a7b7cf92ca9a167dbec1131ab 548 SUPERFAMILY SSF53850 29 547 4.52E-110 T 13-10-2018 RAM_45670 23ea685a7b7cf92ca9a167dbec1131ab 548 Gene3D G3DSA:3.10.105.10 305 523 5.4E-122 T 13-10-2018 RAM_45670 23ea685a7b7cf92ca9a167dbec1131ab 548 Gene3D G3DSA:3.40.190.10 224 536 5.4E-122 T 13-10-2018 RAM_45670 23ea685a7b7cf92ca9a167dbec1131ab 548 PIRSF PIRSF002741 1 547 3.5E-87 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RAM_45670 23ea685a7b7cf92ca9a167dbec1131ab 548 Gene3D G3DSA:3.90.76.10 47 223 5.4E-122 T 13-10-2018 RAM_46090 7d07cb8b0c81a767a95fecf98c28e3ba 634 Pfam PF10101 Predicted membrane protein (DUF2339) 449 627 1.4E-8 T 13-10-2018 IPR019286 Protein of unknown function DUF2339, transmembrane RAM_46090 7d07cb8b0c81a767a95fecf98c28e3ba 634 Pfam PF10101 Predicted membrane protein (DUF2339) 139 304 1.7E-25 T 13-10-2018 IPR019286 Protein of unknown function DUF2339, transmembrane RAM_16695 5bcbd5015308f0a19e34d7cdf67e410b 310 Pfam PF13581 Histidine kinase-like ATPase domain 194 306 2.9E-16 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_16695 5bcbd5015308f0a19e34d7cdf67e410b 310 SUPERFAMILY SSF55874 208 308 9.86E-9 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_16695 5bcbd5015308f0a19e34d7cdf67e410b 310 Pfam PF14417 MEDS: MEthanogen/methylotroph, DcmR Sensory domain 14 157 1.4E-31 T 13-10-2018 IPR025847 MEDS domain RAM_16695 5bcbd5015308f0a19e34d7cdf67e410b 310 Gene3D G3DSA:3.30.565.10 193 310 3.5E-25 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_05045 0a12d6908256433f1bf192a2a69b614b 402 Pfam PF09594 Glycosyltransferase family 87 75 312 2.3E-42 T 13-10-2018 IPR018584 Glycosyltransferase family 87 GO:0016758 RAM_41360 888e4fc95a529ce85582a274401e421f 63 Pfam PF08410 Domain of unknown function (DUF1737) 11 56 1.3E-21 T 13-10-2018 IPR013619 Domain of unknown function DUF1737 RAM_14350 5139802eca2e4565c3a6e3f068b7bfa3 321 Pfam PF02628 Cytochrome oxidase assembly protein 23 199 2.0E-12 T 13-10-2018 IPR003780 COX15/CtaA family GO:0006784|GO:0016021|GO:0016627|GO:0055114 Reactome: R-HSA-189451 RAM_39225 7e2ebfd13e26c151c74df957db408222 202 Gene3D G3DSA:1.10.357.10 7 201 3.7E-38 T 13-10-2018 RAM_39225 7e2ebfd13e26c151c74df957db408222 202 SUPERFAMILY SSF46689 7 73 1.44E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_39225 7e2ebfd13e26c151c74df957db408222 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 21 34 3.1E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_39225 7e2ebfd13e26c151c74df957db408222 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 42 65 3.1E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_39225 7e2ebfd13e26c151c74df957db408222 202 SUPERFAMILY SSF48498 81 192 9.15E-19 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_39225 7e2ebfd13e26c151c74df957db408222 202 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 67 4.5E-14 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_39225 7e2ebfd13e26c151c74df957db408222 202 Pfam PF13977 BetI-type transcriptional repressor, C-terminal 87 196 8.1E-15 T 13-10-2018 IPR039538 BetI-type transcriptional repressor, C-terminal RAM_13095 db3aed3f5252e4e408a7cdb23b196fc5 83 Pfam PF11238 Protein of unknown function (DUF3039) 23 79 2.1E-29 T 13-10-2018 IPR021400 Protein of unknown function DUF3039 RAM_25155 1452cc3e6561cb4f922fc4bb106b00c4 234 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 127 155 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_25155 1452cc3e6561cb4f922fc4bb106b00c4 234 SUPERFAMILY SSF51735 2 230 3.45E-78 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_25155 1452cc3e6561cb4f922fc4bb106b00c4 234 Gene3D G3DSA:3.40.50.720 1 233 1.0E-81 T 13-10-2018 RAM_25155 1452cc3e6561cb4f922fc4bb106b00c4 234 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 180 8.5E-8 T 13-10-2018 RAM_25155 1452cc3e6561cb4f922fc4bb106b00c4 234 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 159 9.3E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_25155 1452cc3e6561cb4f922fc4bb106b00c4 234 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 120 128 9.3E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_25155 1452cc3e6561cb4f922fc4bb106b00c4 234 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 67 78 9.3E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_25155 1452cc3e6561cb4f922fc4bb106b00c4 234 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 230 9.9E-58 T 13-10-2018 RAM_25155 1452cc3e6561cb4f922fc4bb106b00c4 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 178 1.4E-42 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_25155 1452cc3e6561cb4f922fc4bb106b00c4 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 140 159 1.4E-42 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_25155 1452cc3e6561cb4f922fc4bb106b00c4 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 194 214 1.4E-42 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_25155 1452cc3e6561cb4f922fc4bb106b00c4 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 67 78 1.4E-42 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_25155 1452cc3e6561cb4f922fc4bb106b00c4 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 1.4E-42 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_25155 1452cc3e6561cb4f922fc4bb106b00c4 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 114 130 1.4E-42 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_18165 4100f45b701bc3e517e51607d34585e9 681 Pfam PF12770 CHAT domain 52 328 4.5E-23 T 13-10-2018 IPR024983 CHAT domain RAM_18165 4100f45b701bc3e517e51607d34585e9 681 Pfam PF13289 SIR2-like domain 494 641 1.6E-14 T 13-10-2018 IPR039444 SIR2-like domain RAM_42390 8f636263bf39e249b796f61b8ddcb774 254 Pfam PF01061 ABC-2 type transporter 5 215 2.5E-31 T 13-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 RAM_42390 8f636263bf39e249b796f61b8ddcb774 254 PIRSF PIRSF006648 1 254 2.6E-45 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 RAM_46910 a825ead523833a33a3e90ef95ba2eded 123 Pfam PF03780 Asp23 family, cell envelope-related function 7 118 2.4E-13 T 13-10-2018 IPR005531 Alkaline shock protein Asp23 RAM_21635 7d2d730e660b314942695b4c7ee7ccae 213 Gene3D G3DSA:2.60.40.420 19 108 4.3E-28 T 13-10-2018 IPR008972 Cupredoxin RAM_21635 7d2d730e660b314942695b4c7ee7ccae 213 SUPERFAMILY SSF49503 11 108 6.2E-26 T 13-10-2018 IPR008972 Cupredoxin RAM_21635 7d2d730e660b314942695b4c7ee7ccae 213 Pfam PF00127 Copper binding proteins, plastocyanin/azurin family 33 108 1.8E-10 T 13-10-2018 IPR000923 Blue (type 1) copper domain GO:0005507|GO:0009055 RAM_21635 7d2d730e660b314942695b4c7ee7ccae 213 PRINTS PR00155 Amicyanin family signature 37 56 3.5E-8 T 13-10-2018 IPR002386 Amicyanin/Pseudoazurin GO:0005507|GO:0009055 RAM_21635 7d2d730e660b314942695b4c7ee7ccae 213 PRINTS PR00155 Amicyanin family signature 77 92 3.5E-8 T 13-10-2018 IPR002386 Amicyanin/Pseudoazurin GO:0005507|GO:0009055 RAM_21635 7d2d730e660b314942695b4c7ee7ccae 213 PRINTS PR00155 Amicyanin family signature 93 108 3.5E-8 T 13-10-2018 IPR002386 Amicyanin/Pseudoazurin GO:0005507|GO:0009055 RAM_24700 a1ec2cca14074af8d23bcecb41ce0249 385 Gene3D G3DSA:3.30.1540.10 227 318 3.6E-122 T 13-10-2018 RAM_24700 a1ec2cca14074af8d23bcecb41ce0249 385 Gene3D G3DSA:3.40.50.10540 7 355 3.6E-122 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily RAM_24700 a1ec2cca14074af8d23bcecb41ce0249 385 SUPERFAMILY SSF89796 5 379 1.57E-123 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily RAM_24700 a1ec2cca14074af8d23bcecb41ce0249 385 Pfam PF02515 CoA-transferase family III 8 371 5.9E-117 T 13-10-2018 IPR003673 CoA-transferase family III GO:0003824 RAM_45900 35021311ffee82ed07f7074bd7b39e24 122 SUPERFAMILY SSF82607 10 89 7.06E-6 T 13-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily RAM_39125 7aa48a811e6cd429f17484c53a0a7597 332 SUPERFAMILY SSF58100 183 318 2.88E-5 T 13-10-2018 RAM_39125 7aa48a811e6cd429f17484c53a0a7597 332 Pfam PF11887 Cholesterol uptake porter CUP1 of Mce4, putative 169 302 9.6E-7 T 13-10-2018 IPR024516 Mammalian cell entry, C-terminal RAM_39125 7aa48a811e6cd429f17484c53a0a7597 332 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 21 307 2.0E-68 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_39125 7aa48a811e6cd429f17484c53a0a7597 332 Pfam PF02470 MlaD protein 44 117 2.1E-14 T 13-10-2018 IPR003399 Mce/MlaD RAM_31885 ec880cf89057f0049c161ff56042f26a 231 SUPERFAMILY SSF53474 4 227 1.75E-22 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_31885 ec880cf89057f0049c161ff56042f26a 231 Gene3D G3DSA:3.40.50.1820 1 230 4.9E-32 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_31885 ec880cf89057f0049c161ff56042f26a 231 Pfam PF12697 Alpha/beta hydrolase family 6 224 4.2E-14 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_45165 8cd4587d9953f654bbbe0b66fe8ebafd 58 Pfam PF14029 Protein of unknown function (DUF4244) 3 55 5.8E-23 T 13-10-2018 IPR025338 Protein of unknown function DUF4244 RAM_34325 03065f63f29abdf3607a863b2e55ffa2 285 TIGRFAM TIGR00762 DegV: EDD domain protein, DegV family 3 277 1.7E-84 T 13-10-2018 IPR003797 DegV RAM_34325 03065f63f29abdf3607a863b2e55ffa2 285 SUPERFAMILY SSF82549 2 278 6.54E-75 T 13-10-2018 RAM_34325 03065f63f29abdf3607a863b2e55ffa2 285 Pfam PF02645 Uncharacterised protein, DegV family COG1307 3 278 2.2E-79 T 13-10-2018 IPR003797 DegV RAM_34325 03065f63f29abdf3607a863b2e55ffa2 285 Gene3D G3DSA:3.30.1180.10 154 278 6.2E-40 T 13-10-2018 RAM_34325 03065f63f29abdf3607a863b2e55ffa2 285 Gene3D G3DSA:3.40.50.10170 1 151 3.9E-45 T 13-10-2018 RAM_42345 b97dae24ee9df7cd0ac790278c6b9f90 135 Pfam PF04266 ASCH domain 13 105 7.8E-15 T 13-10-2018 IPR007374 ASCH domain RAM_42345 b97dae24ee9df7cd0ac790278c6b9f90 135 PIRSF PIRSF021320 2 134 5.3E-39 T 13-10-2018 IPR009326 Protein of unknown function DUF984 RAM_42345 b97dae24ee9df7cd0ac790278c6b9f90 135 SUPERFAMILY SSF88697 6 132 1.74E-30 T 13-10-2018 IPR015947 PUA-like superfamily RAM_42345 b97dae24ee9df7cd0ac790278c6b9f90 135 Gene3D G3DSA:3.10.400.10 2 135 7.1E-40 T 13-10-2018 RAM_42345 b97dae24ee9df7cd0ac790278c6b9f90 135 SMART SM01022 6 132 6.5E-27 T 13-10-2018 IPR007374 ASCH domain RAM_22035 da70cf469b27d3a7b929e99ab19da23a 345 Pfam PF04909 Amidohydrolase 12 323 1.1E-39 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RAM_22035 da70cf469b27d3a7b929e99ab19da23a 345 SUPERFAMILY SSF51556 10 328 2.34E-40 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_22035 da70cf469b27d3a7b929e99ab19da23a 345 Gene3D G3DSA:3.20.20.140 17 324 2.0E-38 T 13-10-2018 RAM_07835 9b8a587d6a9184c71f25311bdc46b3d2 315 Gene3D G3DSA:1.10.3720.10 109 306 1.4E-22 T 13-10-2018 IPR035906 MetI-like superfamily RAM_07835 9b8a587d6a9184c71f25311bdc46b3d2 315 SUPERFAMILY SSF161098 108 293 7.85E-28 T 13-10-2018 IPR035906 MetI-like superfamily RAM_07835 9b8a587d6a9184c71f25311bdc46b3d2 315 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 131 295 6.3E-13 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_14955 57f263730b912ea2ceb65fb8518bb624 297 Pfam PF13377 Periplasmic binding protein-like domain 130 291 3.9E-25 T 13-10-2018 RAM_14955 57f263730b912ea2ceb65fb8518bb624 297 SUPERFAMILY SSF53822 19 284 6.42E-32 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_14955 57f263730b912ea2ceb65fb8518bb624 297 Gene3D G3DSA:3.40.50.2300 45 283 1.6E-37 T 13-10-2018 RAM_14955 57f263730b912ea2ceb65fb8518bb624 297 Gene3D G3DSA:3.40.50.2300 121 288 1.6E-37 T 13-10-2018 RAM_18700 21335dc8aebe21ddb62246eccb409cdc 104 SUPERFAMILY SSF52266 2 103 6.11E-8 T 13-10-2018 RAM_18700 21335dc8aebe21ddb62246eccb409cdc 104 Gene3D G3DSA:3.40.50.1110 1 104 3.6E-16 T 13-10-2018 IPR036514 SGNH hydrolase superfamily RAM_41960 0e396fe124a5c643a0a708d849061b0c 195 SUPERFAMILY SSF50118 5 97 4.14E-8 T 13-10-2018 RAM_41960 0e396fe124a5c643a0a708d849061b0c 195 Pfam PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system 7 95 1.3E-6 T 13-10-2018 IPR003477 mRNA interferase PemK-like GO:0003677 RAM_16230 86ce4fb4e3a3976c0f19e321be050405 269 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 84 253 8.7E-17 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_16230 86ce4fb4e3a3976c0f19e321be050405 269 Gene3D G3DSA:1.10.3720.10 1 260 3.9E-50 T 13-10-2018 IPR035906 MetI-like superfamily RAM_16230 86ce4fb4e3a3976c0f19e321be050405 269 SUPERFAMILY SSF161098 2 269 4.25E-53 T 13-10-2018 IPR035906 MetI-like superfamily RAM_24865 07e9ceca85d2453d54815e0e10b05c5d 327 Pfam PF13280 WYL domain 148 319 3.9E-26 T 13-10-2018 IPR026881 WYL domain RAM_11350 387fcb1975823d2c731a3b52321582d8 423 Pfam PF06259 Alpha/beta hydrolase 182 350 2.6E-14 T 13-10-2018 IPR010427 Protein of unknown function DUF1023 RAM_32780 54f86bcffebbee24f62dd7226a77c100 241 Gene3D G3DSA:3.40.190.10 71 165 3.6E-26 T 13-10-2018 RAM_32780 54f86bcffebbee24f62dd7226a77c100 241 Gene3D G3DSA:3.40.190.10 18 185 3.6E-26 T 13-10-2018 RAM_32780 54f86bcffebbee24f62dd7226a77c100 241 SUPERFAMILY SSF53850 16 186 1.7E-22 T 13-10-2018 RAM_32780 54f86bcffebbee24f62dd7226a77c100 241 Pfam PF03466 LysR substrate binding domain 16 187 5.9E-21 T 13-10-2018 IPR005119 LysR, substrate-binding RAM_40435 30c1521b543f0db383e6df9366b70185 407 Pfam PF07690 Major Facilitator Superfamily 22 357 3.2E-25 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_40435 30c1521b543f0db383e6df9366b70185 407 Gene3D G3DSA:1.20.1250.20 8 393 1.9E-33 T 13-10-2018 RAM_40435 30c1521b543f0db383e6df9366b70185 407 SUPERFAMILY SSF103473 14 391 9.81E-35 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_29445 53de062d3e483fad9f048a0f1d6d1da4 125 Pfam PF10012 Uncharacterized protein conserved in bacteria (DUF2255) 5 118 9.4E-39 T 13-10-2018 IPR016888 Uncharacterised conserved protein UCP028498 RAM_46565 23eb7ce29935483026755f5d2b19a2f8 393 SUPERFAMILY SSF53383 14 388 3.06E-94 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_46565 23eb7ce29935483026755f5d2b19a2f8 393 Gene3D G3DSA:3.40.640.10 10 391 6.6E-117 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_46565 23eb7ce29935483026755f5d2b19a2f8 393 Pfam PF00155 Aminotransferase class I and II 37 383 5.1E-54 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RAM_46565 23eb7ce29935483026755f5d2b19a2f8 393 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 233 246 - T 13-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 RAM_05675 aaa1f6df0cdb01b3217a3e9774dc6ba6 346 SUPERFAMILY SSF53474 27 335 3.35E-50 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_05675 aaa1f6df0cdb01b3217a3e9774dc6ba6 346 Gene3D G3DSA:3.40.50.1820 28 340 1.4E-51 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_05675 aaa1f6df0cdb01b3217a3e9774dc6ba6 346 Pfam PF12697 Alpha/beta hydrolase family 57 333 2.5E-19 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_07250 f9afa0a4fadc9c8ca6f491d0749887ed 439 SMART SM00387 232 343 5.5E-10 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_07250 f9afa0a4fadc9c8ca6f491d0749887ed 439 Gene3D G3DSA:3.30.565.10 198 341 9.8E-15 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_07250 f9afa0a4fadc9c8ca6f491d0749887ed 439 SUPERFAMILY SSF55874 224 342 3.42E-19 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_07250 f9afa0a4fadc9c8ca6f491d0749887ed 439 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 235 341 2.1E-11 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_29155 bcdc73cad29bbc7749355b903f6df331 196 SUPERFAMILY SSF48498 81 186 6.23E-14 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_29155 bcdc73cad29bbc7749355b903f6df331 196 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 61 2.9E-12 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_29155 bcdc73cad29bbc7749355b903f6df331 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 4.8E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_29155 bcdc73cad29bbc7749355b903f6df331 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 4.8E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_29155 bcdc73cad29bbc7749355b903f6df331 196 Gene3D G3DSA:1.10.357.10 7 194 1.5E-45 T 13-10-2018 RAM_29155 bcdc73cad29bbc7749355b903f6df331 196 SUPERFAMILY SSF46689 6 76 2.72E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_19990 2a7959f95e29f3d182ac855e8815efb3 274 PIRSF PIRSF001359 1 273 6.3E-69 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 RAM_19990 2a7959f95e29f3d182ac855e8815efb3 274 Pfam PF01116 Fructose-bisphosphate aldolase class-II 4 272 2.5E-76 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 RAM_19990 2a7959f95e29f3d182ac855e8815efb3 274 Gene3D G3DSA:3.20.20.70 1 274 1.2E-80 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_19990 2a7959f95e29f3d182ac855e8815efb3 274 SUPERFAMILY SSF51569 2 271 7.91E-75 T 13-10-2018 RAM_09540 3919e1eefa531be4442bd711f74abbce 317 Pfam PF07676 WD40-like Beta Propeller Repeat 226 252 2.3E-4 T 13-10-2018 IPR011659 WD40-like Beta Propeller RAM_09540 3919e1eefa531be4442bd711f74abbce 317 Gene3D G3DSA:2.120.10.30 173 317 7.5E-14 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RAM_09540 3919e1eefa531be4442bd711f74abbce 317 SUPERFAMILY SSF69304 102 304 1.57E-15 T 13-10-2018 RAM_17220 1e2cb28bef75c68a65572c347eb46edc 510 SUPERFAMILY SSF56801 4 507 1.57E-136 T 13-10-2018 RAM_17220 1e2cb28bef75c68a65572c347eb46edc 510 Pfam PF00501 AMP-binding enzyme 11 417 4.8E-88 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_17220 1e2cb28bef75c68a65572c347eb46edc 510 ProSitePatterns PS00455 Putative AMP-binding domain signature. 181 192 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_17220 1e2cb28bef75c68a65572c347eb46edc 510 Gene3D G3DSA:3.40.50.12780 2 414 1.8E-101 T 13-10-2018 RAM_17220 1e2cb28bef75c68a65572c347eb46edc 510 Pfam PF13193 AMP-binding enzyme C-terminal domain 427 499 2.7E-20 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_17220 1e2cb28bef75c68a65572c347eb46edc 510 Gene3D G3DSA:3.30.300.310 415 510 1.5E-30 T 13-10-2018 RAM_13165 314e9e8a39bd11c63be212f59974e311 651 Gene3D G3DSA:3.20.20.80 133 630 4.3E-121 T 13-10-2018 RAM_13165 314e9e8a39bd11c63be212f59974e311 651 SUPERFAMILY SSF51445 137 636 1.62E-133 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_13165 314e9e8a39bd11c63be212f59974e311 651 Pfam PF02446 4-alpha-glucanotransferase 142 625 1.8E-113 T 13-10-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 RAM_13165 314e9e8a39bd11c63be212f59974e311 651 TIGRFAM TIGR00217 malQ: 4-alpha-glucanotransferase 107 637 1.6E-86 T 13-10-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 RAM_15455 b991b9a433a7b10684c0df383f03e64e 476 Gene3D G3DSA:3.40.50.1820 1 475 5.3E-116 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_15455 b991b9a433a7b10684c0df383f03e64e 476 PRINTS PR00878 Cholinesterase signature 110 139 7.6E-5 T 13-10-2018 IPR000997 Cholinesterase GO:0004104 Reactome: R-HSA-112311|Reactome: R-HSA-1483191|Reactome: R-HSA-422085 RAM_15455 b991b9a433a7b10684c0df383f03e64e 476 PRINTS PR00878 Cholinesterase signature 415 427 7.6E-5 T 13-10-2018 IPR000997 Cholinesterase GO:0004104 Reactome: R-HSA-112311|Reactome: R-HSA-1483191|Reactome: R-HSA-422085 RAM_15455 b991b9a433a7b10684c0df383f03e64e 476 Pfam PF00135 Carboxylesterase family 3 462 3.8E-84 T 13-10-2018 IPR002018 Carboxylesterase, type B RAM_15455 b991b9a433a7b10684c0df383f03e64e 476 SUPERFAMILY SSF53474 3 473 9.74E-95 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_29910 e92976f224ec20a7974e9258c1ad7874 202 Pfam PF11354 Protein of unknown function (DUF3156) 6 86 6.6E-4 T 13-10-2018 IPR021500 Protein of unknown function DUF3156 RAM_17525 6359abb85391cebd831b224c45988d18 528 Pfam PF13193 AMP-binding enzyme C-terminal domain 432 511 3.6E-19 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RAM_17525 6359abb85391cebd831b224c45988d18 528 SUPERFAMILY SSF56801 8 523 6.54E-132 T 13-10-2018 RAM_17525 6359abb85391cebd831b224c45988d18 528 Gene3D G3DSA:3.30.300.30 417 527 8.2E-30 T 13-10-2018 RAM_17525 6359abb85391cebd831b224c45988d18 528 Gene3D G3DSA:3.40.50.12780 5 416 7.3E-94 T 13-10-2018 RAM_17525 6359abb85391cebd831b224c45988d18 528 ProSitePatterns PS00455 Putative AMP-binding domain signature. 178 189 - T 13-10-2018 IPR020845 AMP-binding, conserved site RAM_17525 6359abb85391cebd831b224c45988d18 528 Pfam PF00501 AMP-binding enzyme 20 423 3.9E-83 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RAM_23370 7d4730023eaa4a2fd814d9af12e66e30 231 Gene3D G3DSA:1.10.357.10 2 184 5.9E-31 T 13-10-2018 RAM_23370 7d4730023eaa4a2fd814d9af12e66e30 231 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 1.7E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_23370 7d4730023eaa4a2fd814d9af12e66e30 231 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 1.7E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_23370 7d4730023eaa4a2fd814d9af12e66e30 231 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 59 3.5E-13 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_23370 7d4730023eaa4a2fd814d9af12e66e30 231 SUPERFAMILY SSF46689 5 69 6.14E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_23370 7d4730023eaa4a2fd814d9af12e66e30 231 SUPERFAMILY SSF48498 82 163 1.24E-8 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_47250 238d581c00748cbd058312c50fedaeb4 334 Gene3D G3DSA:3.40.50.720 2 149 9.7E-16 T 13-10-2018 RAM_47250 238d581c00748cbd058312c50fedaeb4 334 SUPERFAMILY SSF51735 3 116 4.53E-10 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_23790 f98116f86d5f7e348ae70b4c684f0b3d 379 Pfam PF00924 Mechanosensitive ion channel 142 282 3.2E-24 T 13-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 RAM_23790 f98116f86d5f7e348ae70b4c684f0b3d 379 SUPERFAMILY SSF50182 179 244 2.78E-13 T 13-10-2018 IPR010920 LSM domain superfamily RAM_23910 8facf08cd4dc4befe28f046c8a621eba 273 Pfam PF13460 NAD(P)H-binding 9 169 6.5E-8 T 13-10-2018 IPR016040 NAD(P)-binding domain RAM_23910 8facf08cd4dc4befe28f046c8a621eba 273 Gene3D G3DSA:3.90.25.10 120 253 8.1E-57 T 13-10-2018 RAM_23910 8facf08cd4dc4befe28f046c8a621eba 273 SUPERFAMILY SSF51735 3 264 1.07E-36 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_23910 8facf08cd4dc4befe28f046c8a621eba 273 Gene3D G3DSA:3.40.50.720 6 251 8.1E-57 T 13-10-2018 RAM_33120 6ced9e096bb424add30507d87b5b1c34 156 Pfam PF01471 Putative peptidoglycan binding domain 77 142 8.7E-8 T 13-10-2018 IPR002477 Peptidoglycan binding-like RAM_33120 6ced9e096bb424add30507d87b5b1c34 156 Gene3D G3DSA:1.10.101.10 62 150 3.9E-13 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 RAM_33120 6ced9e096bb424add30507d87b5b1c34 156 SUPERFAMILY SSF47090 103 145 7.14E-9 T 13-10-2018 IPR036365 PGBD-like superfamily RAM_20945 43e9b1b2cb1a962ed617690643e2c36c 524 Pfam PF00171 Aldehyde dehydrogenase family 32 487 9.1E-137 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RAM_20945 43e9b1b2cb1a962ed617690643e2c36c 524 Gene3D G3DSA:3.40.605.10 30 483 1.3E-146 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RAM_20945 43e9b1b2cb1a962ed617690643e2c36c 524 SUPERFAMILY SSF53720 26 487 2.36E-139 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RAM_20945 43e9b1b2cb1a962ed617690643e2c36c 524 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 260 267 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 RAM_20945 43e9b1b2cb1a962ed617690643e2c36c 524 Gene3D G3DSA:3.40.309.10 267 460 1.3E-146 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RAM_00375 cb340f74d49bec93c40815fb0382358a 403 Pfam PF01548 Transposase 9 163 3.5E-50 T 13-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 RAM_00375 cb340f74d49bec93c40815fb0382358a 403 Pfam PF02371 Transposase IS116/IS110/IS902 family 270 356 6.3E-21 T 13-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 RAM_22600 a8988f7914a4a1ec82a53321e56a8dfe 342 SUPERFAMILY SSF51126 24 339 2.02E-65 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor RAM_22600 a8988f7914a4a1ec82a53321e56a8dfe 342 Pfam PF01095 Pectinesterase 29 333 6.6E-46 T 13-10-2018 IPR000070 Pectinesterase, catalytic GO:0005618|GO:0030599|GO:0042545 KEGG: 00040+3.1.1.11|MetaCyc: PWY-1081|MetaCyc: PWY-7246|MetaCyc: PWY-7248 RAM_22600 a8988f7914a4a1ec82a53321e56a8dfe 342 ProSitePatterns PS00503 Pectinesterase signature 2. 189 198 - T 13-10-2018 IPR033131 Pectinesterase, Asp active site KEGG: 00040+3.1.1.11|MetaCyc: PWY-1081|MetaCyc: PWY-7246|MetaCyc: PWY-7248 RAM_22600 a8988f7914a4a1ec82a53321e56a8dfe 342 Gene3D G3DSA:2.160.20.10 25 342 9.7E-96 T 13-10-2018 IPR012334 Pectin lyase fold RAM_45630 58666a8e7cd6f6ef58f0ab97c6cec793 213 Pfam PF09335 SNARE associated Golgi protein 32 160 2.9E-18 T 13-10-2018 IPR032816 SNARE associated Golgi protein RAM_13505 5fa50a0c8cfba44eebab2249aaf1fdb9 332 Pfam PF00296 Luciferase-like monooxygenase 12 299 2.4E-39 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_13505 5fa50a0c8cfba44eebab2249aaf1fdb9 332 Gene3D G3DSA:3.20.20.30 2 327 2.4E-86 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_13505 5fa50a0c8cfba44eebab2249aaf1fdb9 332 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 4 323 1.2E-103 T 13-10-2018 IPR019949 Luciferase family oxidoreductase, group 1 RAM_13505 5fa50a0c8cfba44eebab2249aaf1fdb9 332 SUPERFAMILY SSF51679 4 323 5.63E-68 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_24340 90d0239d0413d345872ff3101c4fa956 301 SUPERFAMILY SSF141130 11 298 9.02E-68 T 13-10-2018 RAM_24340 90d0239d0413d345872ff3101c4fa956 301 Gene3D G3DSA:2.60.120.580 4 112 1.9E-13 T 13-10-2018 RAM_24340 90d0239d0413d345872ff3101c4fa956 301 Gene3D G3DSA:2.60.120.580 126 220 5.6E-27 T 13-10-2018 RAM_24340 90d0239d0413d345872ff3101c4fa956 301 Gene3D G3DSA:3.10.28.20 227 300 6.1E-13 T 13-10-2018 RAM_24340 90d0239d0413d345872ff3101c4fa956 301 Pfam PF03069 Acetamidase/Formamidase family 153 216 6.2E-15 T 13-10-2018 IPR004304 Acetamidase/Formamidase GO:0016811 RAM_24340 90d0239d0413d345872ff3101c4fa956 301 Pfam PF03069 Acetamidase/Formamidase family 17 147 7.3E-8 T 13-10-2018 IPR004304 Acetamidase/Formamidase GO:0016811 RAM_14375 f57e76676423030f06ee4b0ce4f2997e 283 Pfam PF13518 Helix-turn-helix domain 33 84 2.5E-6 T 13-10-2018 RAM_14375 f57e76676423030f06ee4b0ce4f2997e 283 SUPERFAMILY SSF46785 30 228 3.39E-27 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_14375 f57e76676423030f06ee4b0ce4f2997e 283 Gene3D G3DSA:1.10.10.10 27 112 3.7E-10 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_00460 b4384bd8e21bb927d6eaaf0ef91b917f 295 Pfam PF01636 Phosphotransferase enzyme family 35 237 3.1E-15 T 13-10-2018 IPR002575 Aminoglycoside phosphotransferase RAM_00460 b4384bd8e21bb927d6eaaf0ef91b917f 295 SUPERFAMILY SSF56112 10 260 1.24E-31 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_00460 b4384bd8e21bb927d6eaaf0ef91b917f 295 Gene3D G3DSA:3.90.1200.10 91 257 7.2E-8 T 13-10-2018 RAM_27745 8da94b6f1eddf96454f3288a27e95266 328 Pfam PF13350 Tyrosine phosphatase family 285 325 7.4E-5 T 13-10-2018 IPR026893 Tyrosine/serine-protein phosphatase IphP-type RAM_27745 8da94b6f1eddf96454f3288a27e95266 328 Pfam PF13350 Tyrosine phosphatase family 112 282 2.2E-42 T 13-10-2018 IPR026893 Tyrosine/serine-protein phosphatase IphP-type RAM_27745 8da94b6f1eddf96454f3288a27e95266 328 Gene3D G3DSA:3.90.190.10 111 325 2.6E-47 T 13-10-2018 IPR029021 Protein-tyrosine phosphatase-like RAM_27745 8da94b6f1eddf96454f3288a27e95266 328 SUPERFAMILY SSF52799 111 324 5.3E-42 T 13-10-2018 IPR029021 Protein-tyrosine phosphatase-like RAM_30230 a5b99c6755d3a9036edeed73d94525f4 243 SUPERFAMILY SSF55781 33 180 9.81E-22 T 13-10-2018 RAM_30230 a5b99c6755d3a9036edeed73d94525f4 243 Pfam PF03861 ANTAR domain 182 233 3.7E-18 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 RAM_30230 a5b99c6755d3a9036edeed73d94525f4 243 PIRSF PIRSF036625 6 243 1.4E-56 T 13-10-2018 IPR012074 GAF-ANTAR transcription anti-termination regulator, putative RAM_30230 a5b99c6755d3a9036edeed73d94525f4 243 Pfam PF13185 GAF domain 33 166 8.8E-15 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_30230 a5b99c6755d3a9036edeed73d94525f4 243 Gene3D G3DSA:1.10.10.10 182 242 8.2E-10 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_30230 a5b99c6755d3a9036edeed73d94525f4 243 SMART SM01012 179 234 3.1E-20 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 RAM_30230 a5b99c6755d3a9036edeed73d94525f4 243 Gene3D G3DSA:3.30.450.40 9 181 6.1E-23 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_30230 a5b99c6755d3a9036edeed73d94525f4 243 SMART SM00065 31 177 2.4E-8 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_20640 43a5fc9d2949a7aad17bdc8c6440f550 190 Gene3D G3DSA:1.20.58.1460 116 185 1.4E-6 T 13-10-2018 RAM_20640 43a5fc9d2949a7aad17bdc8c6440f550 190 Gene3D G3DSA:3.30.70.2650 14 99 2.2E-5 T 13-10-2018 RAM_20640 43a5fc9d2949a7aad17bdc8c6440f550 190 Pfam PF08223 PaaX-like protein C-terminal domain 94 178 2.2E-14 T 13-10-2018 IPR013225 PaaX-like, C-terminal RAM_00875 00d2a275e4f23a79f2b83b234c1d8546 112 Pfam PF11225 Protein of unknown function (DUF3024) 58 111 1.5E-16 T 13-10-2018 IPR021388 Bacteriophage 933W, L0084 RAM_11410 c0d893ae84db77a51d71d337875b4abc 359 SUPERFAMILY SSF140453 30 114 2.22E-6 T 13-10-2018 IPR036689 ESAT-6-like superfamily RAM_11410 c0d893ae84db77a51d71d337875b4abc 359 Gene3D G3DSA:1.10.287.1060 25 115 9.5E-7 T 13-10-2018 RAM_09380 0b0ceb60c22ba71853be9ff6d809dcd5 97 SUPERFAMILY SSF89360 1 86 7.46E-11 T 13-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 RAM_09380 0b0ceb60c22ba71853be9ff6d809dcd5 97 Pfam PF01521 Iron-sulphur cluster biosynthesis 2 84 2.9E-7 T 13-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 RAM_09380 0b0ceb60c22ba71853be9ff6d809dcd5 97 Gene3D G3DSA:2.60.300.12 1 94 2.7E-9 T 13-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 RAM_42905 985fe186294d606b630fd9f708167fe7 267 Pfam PF09995 Uncharacterized protein conserved in bacteria (DUF2236) 13 231 1.1E-40 T 13-10-2018 IPR018713 Domain of unknown function DUF2236 RAM_11315 e8d0a6fa8ad6c8ff769c4e7075d72193 238 SUPERFAMILY SSF88697 15 209 1.04E-38 T 13-10-2018 IPR015947 PUA-like superfamily RAM_11315 e8d0a6fa8ad6c8ff769c4e7075d72193 238 Gene3D G3DSA:2.30.130.40 2 126 1.2E-29 T 13-10-2018 RAM_11315 e8d0a6fa8ad6c8ff769c4e7075d72193 238 SMART SM00464 14 210 2.1E-20 T 13-10-2018 IPR003111 Lon, substrate-binding domain RAM_11315 e8d0a6fa8ad6c8ff769c4e7075d72193 238 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 15 210 4.0E-25 T 13-10-2018 IPR003111 Lon, substrate-binding domain RAM_04470 e42e28bf31d599eabcd52b00a712f003 403 Gene3D G3DSA:1.10.630.10 11 403 5.6E-123 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_04470 e42e28bf31d599eabcd52b00a712f003 403 PRINTS PR00359 B-class P450 signature 343 352 3.3E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_04470 e42e28bf31d599eabcd52b00a712f003 403 PRINTS PR00359 B-class P450 signature 352 363 3.3E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_04470 e42e28bf31d599eabcd52b00a712f003 403 PRINTS PR00359 B-class P450 signature 93 104 3.3E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_04470 e42e28bf31d599eabcd52b00a712f003 403 PRINTS PR00359 B-class P450 signature 140 156 3.3E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_04470 e42e28bf31d599eabcd52b00a712f003 403 PRINTS PR00359 B-class P450 signature 276 287 3.3E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_04470 e42e28bf31d599eabcd52b00a712f003 403 PRINTS PR00359 B-class P450 signature 322 337 3.3E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_04470 e42e28bf31d599eabcd52b00a712f003 403 PRINTS PR00359 B-class P450 signature 294 321 3.3E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_04470 e42e28bf31d599eabcd52b00a712f003 403 PRINTS PR00359 B-class P450 signature 157 172 3.3E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_04470 e42e28bf31d599eabcd52b00a712f003 403 PRINTS PR00359 B-class P450 signature 194 216 3.3E-52 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_04470 e42e28bf31d599eabcd52b00a712f003 403 PRINTS PR00385 P450 superfamily signature 241 258 1.2E-8 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_04470 e42e28bf31d599eabcd52b00a712f003 403 PRINTS PR00385 P450 superfamily signature 276 287 1.2E-8 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_04470 e42e28bf31d599eabcd52b00a712f003 403 PRINTS PR00385 P450 superfamily signature 352 363 1.2E-8 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_04470 e42e28bf31d599eabcd52b00a712f003 403 PRINTS PR00385 P450 superfamily signature 343 352 1.2E-8 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_04470 e42e28bf31d599eabcd52b00a712f003 403 Pfam PF00067 Cytochrome P450 182 263 1.9E-5 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_04470 e42e28bf31d599eabcd52b00a712f003 403 Pfam PF00067 Cytochrome P450 277 372 2.1E-19 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_04470 e42e28bf31d599eabcd52b00a712f003 403 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 345 354 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RAM_04470 e42e28bf31d599eabcd52b00a712f003 403 SUPERFAMILY SSF48264 10 403 9.04E-93 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_07400 ac40d03aea862cca45838ea096574813 126 Pfam PF13564 DoxX-like family 7 114 2.8E-29 T 13-10-2018 IPR032808 DoxX family RAM_44005 6ed479853e0fa4406dc44fd6f6db7eab 336 Pfam PF16670 Phosphoinositide phospholipase C, Ca2+-dependent 100 190 1.8E-11 T 13-10-2018 IPR032075 Phosphoinositide phospholipase C, Ca2+-dependent RAM_44005 6ed479853e0fa4406dc44fd6f6db7eab 336 SUPERFAMILY SSF51695 23 198 6.02E-16 T 13-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 RAM_44005 6ed479853e0fa4406dc44fd6f6db7eab 336 Gene3D G3DSA:3.20.20.190 26 336 2.8E-113 T 13-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 RAM_44115 363defd170786156cfb67c9cb15e4df2 130 Gene3D G3DSA:2.60.120.10 1 115 8.6E-43 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_44115 363defd170786156cfb67c9cb15e4df2 130 SUPERFAMILY SSF51182 18 125 2.08E-19 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RAM_44115 363defd170786156cfb67c9cb15e4df2 130 ProDom PD080544 SYNTHASE 4.2.1.- LYASE L-ECTOINE DEHYDRATASE N-ACETYLDIAMINOBUTYRATE ECTOINE ENZYME SYNTHASE:ECTOINE ECTC 1 117 5.0E-40 T 13-10-2018 IPR010462 Ectoine synthase GO:0019491|GO:0033990 KEGG: 00260+4.2.1.108 RAM_44115 363defd170786156cfb67c9cb15e4df2 130 Pfam PF06339 Ectoine synthase 2 125 1.5E-58 T 13-10-2018 IPR010462 Ectoine synthase GO:0019491|GO:0033990 KEGG: 00260+4.2.1.108 RAM_44115 363defd170786156cfb67c9cb15e4df2 130 Hamap MF_01255 L-ectoine synthase [ectC]. 1 127 37.549 T 13-10-2018 IPR010462 Ectoine synthase GO:0019491|GO:0033990 KEGG: 00260+4.2.1.108 RAM_36440 24f83880d9a301364925e49617708d52 401 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 149 164 6.1E-20 T 13-10-2018 RAM_36440 24f83880d9a301364925e49617708d52 401 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 283 298 6.1E-20 T 13-10-2018 RAM_36440 24f83880d9a301364925e49617708d52 401 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 3 25 6.1E-20 T 13-10-2018 RAM_36440 24f83880d9a301364925e49617708d52 401 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 298 314 6.1E-20 T 13-10-2018 RAM_36440 24f83880d9a301364925e49617708d52 401 Gene3D G3DSA:3.30.9.30 36 275 5.9E-76 T 13-10-2018 RAM_36440 24f83880d9a301364925e49617708d52 401 Gene3D G3DSA:3.50.50.60 5 346 5.9E-76 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_36440 24f83880d9a301364925e49617708d52 401 SUPERFAMILY SSF51905 2 357 6.83E-54 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_36440 24f83880d9a301364925e49617708d52 401 Pfam PF01494 FAD binding domain 2 344 2.2E-22 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_01175 64d94999de24525ad9bb5459f8ca28ae 639 SUPERFAMILY SSF53448 180 468 4.95E-28 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_01175 64d94999de24525ad9bb5459f8ca28ae 639 Pfam PF13641 Glycosyltransferase like family 2 180 434 3.8E-32 T 13-10-2018 RAM_01175 64d94999de24525ad9bb5459f8ca28ae 639 Gene3D G3DSA:3.90.550.60 35 422 3.0E-114 T 13-10-2018 RAM_41670 b6e1a9506947325265f61c01b847867c 486 Gene3D G3DSA:2.60.40.10 321 437 5.1E-9 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_41670 b6e1a9506947325265f61c01b847867c 486 Gene3D G3DSA:2.60.40.10 189 286 3.2E-5 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_25210 ec99acc4161673a44bb710c3f8b91092 181 Gene3D G3DSA:3.90.550.10 6 181 1.2E-34 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_25210 ec99acc4161673a44bb710c3f8b91092 181 SUPERFAMILY SSF53448 3 178 1.32E-26 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_25210 ec99acc4161673a44bb710c3f8b91092 181 Pfam PF12804 MobA-like NTP transferase domain 5 154 9.2E-25 T 13-10-2018 IPR025877 MobA-like NTP transferase RAM_12985 225bc9481251aacf2de4d54f44f88b94 387 Gene3D G3DSA:3.40.47.10 2 381 7.3E-80 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_12985 225bc9481251aacf2de4d54f44f88b94 387 PIRSF PIRSF000429 163 377 2.1E-10 T 13-10-2018 IPR002155 Thiolase GO:0016747 RAM_12985 225bc9481251aacf2de4d54f44f88b94 387 PIRSF PIRSF000429 2 127 1.1E-6 T 13-10-2018 IPR002155 Thiolase GO:0016747 RAM_12985 225bc9481251aacf2de4d54f44f88b94 387 SUPERFAMILY SSF53901 247 371 2.16E-17 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_12985 225bc9481251aacf2de4d54f44f88b94 387 SUPERFAMILY SSF53901 11 223 1.24E-20 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_05330 89048beba62f773a91aa2b78686527a8 287 Pfam PF13578 Methyltransferase domain 132 244 1.2E-12 T 13-10-2018 RAM_05330 89048beba62f773a91aa2b78686527a8 287 Gene3D G3DSA:3.40.50.150 61 283 6.5E-37 T 13-10-2018 RAM_05330 89048beba62f773a91aa2b78686527a8 287 SUPERFAMILY SSF53335 109 262 5.4E-18 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_38310 5e498722c291001615d04e325ffae4df 508 Pfam PF00561 alpha/beta hydrolase fold 83 264 1.1E-18 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_38310 5e498722c291001615d04e325ffae4df 508 Pfam PF08386 TAP-like protein 397 499 3.8E-19 T 13-10-2018 IPR013595 Peptidase S33 tripeptidyl aminopeptidase-like, C-terminal RAM_38310 5e498722c291001615d04e325ffae4df 508 SUPERFAMILY SSF53474 82 473 2.62E-20 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_41630 76e7a5a7f407931b2307d4740b5d612c 157 SUPERFAMILY SSF50475 21 151 1.62E-23 T 13-10-2018 RAM_41630 76e7a5a7f407931b2307d4740b5d612c 157 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 23 98 1.2E-11 T 13-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RAM_41630 76e7a5a7f407931b2307d4740b5d612c 157 Gene3D G3DSA:2.30.110.10 15 153 4.4E-31 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_41630 76e7a5a7f407931b2307d4740b5d612c 157 TIGRFAM TIGR03618 Rv1155_F420: PPOX class probable F420-dependent enzyme 23 151 3.4E-25 T 13-10-2018 IPR019920 F420-binding domain, putative RAM_37195 701f0324e67a5725f3187cfd53813b6d 136 SUPERFAMILY SSF46785 29 128 2.99E-29 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_37195 701f0324e67a5725f3187cfd53813b6d 136 Gene3D G3DSA:1.10.10.10 22 134 2.6E-38 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_37195 701f0324e67a5725f3187cfd53813b6d 136 Pfam PF01638 HxlR-like helix-turn-helix 37 122 1.6E-27 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type RAM_31115 d9ab8d55d7af6fc7a59d594c3ce468f1 280 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 83 274 1.1E-18 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_31115 d9ab8d55d7af6fc7a59d594c3ce468f1 280 Gene3D G3DSA:1.10.3720.10 2 268 1.1E-59 T 13-10-2018 IPR035906 MetI-like superfamily RAM_31115 d9ab8d55d7af6fc7a59d594c3ce468f1 280 SUPERFAMILY SSF161098 3 280 1.31E-65 T 13-10-2018 IPR035906 MetI-like superfamily RAM_14910 adf243b29df1dda7de7aeac2662eff7d 393 Pfam PF07730 Histidine kinase 195 260 5.4E-13 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_14910 adf243b29df1dda7de7aeac2662eff7d 393 SUPERFAMILY SSF55874 296 391 1.73E-12 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_14910 adf243b29df1dda7de7aeac2662eff7d 393 Gene3D G3DSA:3.30.565.10 267 390 1.1E-23 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_39185 e054493d98a6dab12cbcb23aa42a522a 869 SUPERFAMILY SSF48452 111 228 6.33E-13 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_39185 e054493d98a6dab12cbcb23aa42a522a 869 Pfam PF13424 Tetratricopeptide repeat 159 226 3.2E-7 T 13-10-2018 RAM_39185 e054493d98a6dab12cbcb23aa42a522a 869 Pfam PF12770 CHAT domain 627 853 2.5E-29 T 13-10-2018 IPR024983 CHAT domain RAM_39185 e054493d98a6dab12cbcb23aa42a522a 869 SMART SM00028 195 228 88.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_39185 e054493d98a6dab12cbcb23aa42a522a 869 SMART SM00028 13 46 380.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_39185 e054493d98a6dab12cbcb23aa42a522a 869 SMART SM00028 155 188 0.0018 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RAM_20775 0a0d61aad67d41d28183e90696895a00 272 Pfam PF04240 Carotenoid biosynthesis protein 47 252 1.2E-32 T 13-10-2018 IPR007354 Carotene biosynthesis associated membrane protein RAM_40940 4266a01665fedcb679a4f1bd5ef9b418 157 Gene3D G3DSA:3.10.129.10 12 154 2.7E-43 T 13-10-2018 RAM_40940 4266a01665fedcb679a4f1bd5ef9b418 157 Pfam PF14539 Domain of unknown function (DUF4442) 19 152 7.9E-56 T 13-10-2018 IPR027961 Protein of unknown function DUF4442 RAM_40940 4266a01665fedcb679a4f1bd5ef9b418 157 SUPERFAMILY SSF54637 17 155 1.29E-21 T 13-10-2018 IPR029069 HotDog domain superfamily RAM_19490 e904691c44d744ffc8cdbe33ff735473 273 Gene3D G3DSA:3.90.226.10 1 200 1.5E-61 T 13-10-2018 RAM_19490 e904691c44d744ffc8cdbe33ff735473 273 SUPERFAMILY SSF52096 2 258 7.67E-75 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_19490 e904691c44d744ffc8cdbe33ff735473 273 Pfam PF00378 Enoyl-CoA hydratase/isomerase 11 256 8.0E-46 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RAM_19490 e904691c44d744ffc8cdbe33ff735473 273 Gene3D G3DSA:1.10.12.10 202 257 6.3E-10 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal RAM_34185 6487a080a5d4640597c3953bf8882b9f 1014 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 262 376 6.1E-10 T 13-10-2018 RAM_34185 6487a080a5d4640597c3953bf8882b9f 1014 Gene3D G3DSA:3.30.565.10 223 454 9.9E-40 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_34185 6487a080a5d4640597c3953bf8882b9f 1014 SUPERFAMILY SSF55874 236 433 3.8E-25 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_34185 6487a080a5d4640597c3953bf8882b9f 1014 PRINTS PR00775 90kDa heat shock protein signature 259 281 9.7E-9 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal RAM_34185 6487a080a5d4640597c3953bf8882b9f 1014 PRINTS PR00775 90kDa heat shock protein signature 303 320 9.7E-9 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal RAM_34185 6487a080a5d4640597c3953bf8882b9f 1014 PRINTS PR00775 90kDa heat shock protein signature 352 374 9.7E-9 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal RAM_47410 969f8406054ed9f515d73cb3dac15e7b 92 Pfam PF11755 Protein of unknown function (DUF3311) 20 72 2.2E-12 T 13-10-2018 IPR021741 Protein of unknown function DUF3311 RAM_15125 23996265f7d1421fd93461b07c3c7bd1 346 TIGRFAM TIGR03559 F420_Rv3520c: probable F420-dependent oxidoreductase, Rv3520c family 2 324 4.0E-158 T 13-10-2018 IPR019951 F420-dependent oxidoreductase-predicted, Rv3520c RAM_15125 23996265f7d1421fd93461b07c3c7bd1 346 SUPERFAMILY SSF51679 1 343 6.67E-62 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_15125 23996265f7d1421fd93461b07c3c7bd1 346 Gene3D G3DSA:3.20.20.30 1 342 9.6E-71 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_15125 23996265f7d1421fd93461b07c3c7bd1 346 Pfam PF00296 Luciferase-like monooxygenase 6 320 1.3E-71 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_34400 802a8b748debdfd942224b8a6c7f20e4 104 TIGRFAM TIGR00061 L21: ribosomal protein bL21 4 102 2.7E-25 T 13-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_34400 802a8b748debdfd942224b8a6c7f20e4 104 ProSitePatterns PS01169 Ribosomal protein L21 signature. 73 95 - T 13-10-2018 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_34400 802a8b748debdfd942224b8a6c7f20e4 104 SUPERFAMILY SSF141091 4 103 2.22E-32 T 13-10-2018 IPR036164 L21-like superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_34400 802a8b748debdfd942224b8a6c7f20e4 104 Pfam PF00829 Ribosomal prokaryotic L21 protein 4 102 8.6E-34 T 13-10-2018 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_34400 802a8b748debdfd942224b8a6c7f20e4 104 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 3 104 22.064 T 13-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_22220 3b9126938d8c73e3cc0cc9af4b78a153 328 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 116 316 9.9E-15 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_22220 3b9126938d8c73e3cc0cc9af4b78a153 328 SUPERFAMILY SSF161098 83 311 1.96E-50 T 13-10-2018 IPR035906 MetI-like superfamily RAM_22220 3b9126938d8c73e3cc0cc9af4b78a153 328 Gene3D G3DSA:1.10.3720.10 79 322 1.3E-55 T 13-10-2018 IPR035906 MetI-like superfamily RAM_20510 8594f3bd2cf95e346b5d5c9c5112199c 269 Gene3D G3DSA:3.40.47.10 72 181 7.6E-9 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_20510 8594f3bd2cf95e346b5d5c9c5112199c 269 SUPERFAMILY SSF53901 72 183 5.23E-12 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_04260 267d78eb7b5d1b3994e5f7b70c2c9371 98 Gene3D G3DSA:2.30.30.40 26 94 4.4E-6 T 13-10-2018 RAM_36135 9028984f65d6f09489141ce02a1960db 245 Pfam PF09490 Probable cobalt transporter subunit (CbtA) 3 233 9.7E-71 T 13-10-2018 IPR012666 Cobalt transporter subunit CbtA, putative RAM_42095 4871de82798672ceca2335b2983b8d1f 382 SUPERFAMILY SSF53955 69 267 3.56E-36 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily RAM_42095 4871de82798672ceca2335b2983b8d1f 382 Gene3D G3DSA:1.10.530.10 115 276 3.1E-7 T 13-10-2018 RAM_42095 4871de82798672ceca2335b2983b8d1f 382 Pfam PF13406 Transglycosylase SLT domain 185 233 2.5E-7 T 13-10-2018 IPR031304 Transglycosylase SLT domain 2 RAM_36820 c623556b043194b25a8a77d0611756ef 399 PRINTS PR00385 P450 superfamily signature 242 259 1.2E-8 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_36820 c623556b043194b25a8a77d0611756ef 399 PRINTS PR00385 P450 superfamily signature 342 351 1.2E-8 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_36820 c623556b043194b25a8a77d0611756ef 399 PRINTS PR00385 P450 superfamily signature 351 362 1.2E-8 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_36820 c623556b043194b25a8a77d0611756ef 399 PRINTS PR00385 P450 superfamily signature 277 288 1.2E-8 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_36820 c623556b043194b25a8a77d0611756ef 399 Pfam PF00067 Cytochrome P450 208 365 1.2E-20 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_36820 c623556b043194b25a8a77d0611756ef 399 PRINTS PR00359 B-class P450 signature 342 351 3.8E-41 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_36820 c623556b043194b25a8a77d0611756ef 399 PRINTS PR00359 B-class P450 signature 92 103 3.8E-41 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_36820 c623556b043194b25a8a77d0611756ef 399 PRINTS PR00359 B-class P450 signature 351 362 3.8E-41 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_36820 c623556b043194b25a8a77d0611756ef 399 PRINTS PR00359 B-class P450 signature 138 154 3.8E-41 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_36820 c623556b043194b25a8a77d0611756ef 399 PRINTS PR00359 B-class P450 signature 196 218 3.8E-41 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_36820 c623556b043194b25a8a77d0611756ef 399 PRINTS PR00359 B-class P450 signature 155 170 3.8E-41 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_36820 c623556b043194b25a8a77d0611756ef 399 PRINTS PR00359 B-class P450 signature 293 320 3.8E-41 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_36820 c623556b043194b25a8a77d0611756ef 399 PRINTS PR00359 B-class P450 signature 321 336 3.8E-41 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_36820 c623556b043194b25a8a77d0611756ef 399 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 344 353 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RAM_36820 c623556b043194b25a8a77d0611756ef 399 Gene3D G3DSA:1.10.630.10 11 399 6.6E-110 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_36820 c623556b043194b25a8a77d0611756ef 399 SUPERFAMILY SSF48264 31 394 9.43E-87 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_23820 27bf7c2656202fce937b66ff1e6a53dd 162 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 17 140 2.6E-21 T 13-10-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like RAM_23820 27bf7c2656202fce937b66ff1e6a53dd 162 SUPERFAMILY SSF55961 2 143 5.96E-34 T 13-10-2018 RAM_23820 27bf7c2656202fce937b66ff1e6a53dd 162 Gene3D G3DSA:3.30.530.20 2 145 8.7E-35 T 13-10-2018 IPR023393 START-like domain superfamily RAM_35625 efe9eecac9f60152573d66699599e3c5 463 PIRSF PIRSF006060 4 462 5.1E-90 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RAM_35625 efe9eecac9f60152573d66699599e3c5 463 Gene3D G3DSA:1.20.1740.10 24 462 2.0E-119 T 13-10-2018 RAM_35625 efe9eecac9f60152573d66699599e3c5 463 Pfam PF13520 Amino acid permease 29 430 8.7E-57 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RAM_28405 52e938aaebe9d072b8aee1d3ff2bd3c5 47 SUPERFAMILY SSF53474 1 34 1.59E-7 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_28405 52e938aaebe9d072b8aee1d3ff2bd3c5 47 Gene3D G3DSA:3.40.50.1820 1 45 1.4E-6 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_16415 7b760be660d4db00a01c7d81162139ca 99 Pfam PF07561 Domain of Unknown Function (DUF1540) 11 43 2.4E-4 T 13-10-2018 IPR011437 Domain of unknown function DUF1540 RAM_16415 7b760be660d4db00a01c7d81162139ca 99 Pfam PF07561 Domain of Unknown Function (DUF1540) 62 86 0.0014 T 13-10-2018 IPR011437 Domain of unknown function DUF1540 RAM_21195 336e3b033dba80ea366940d83dc3a9e0 294 Gene3D G3DSA:3.40.50.720 1 284 8.7E-38 T 13-10-2018 RAM_21195 336e3b033dba80ea366940d83dc3a9e0 294 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 211 1.1E-15 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 RAM_21195 336e3b033dba80ea366940d83dc3a9e0 294 SUPERFAMILY SSF51735 1 281 1.99E-41 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_26150 d83337e5781cc1d86b5d75e7c2b10cde 55 Gene3D G3DSA:3.30.1380.10 2 55 1.3E-14 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 RAM_26150 d83337e5781cc1d86b5d75e7c2b10cde 55 SUPERFAMILY SSF55166 13 54 6.43E-7 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 RAM_26150 d83337e5781cc1d86b5d75e7c2b10cde 55 Pfam PF08291 Peptidase M15 11 54 2.0E-8 T 13-10-2018 IPR013230 Peptidase M15A, C-terminal KEGG: 00550+3.4.17.14|MetaCyc: PWY-6470 RAM_42985 a450660ceff98abe8b61dbea283ee977 330 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 39 67 6.2E-6 T 13-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain RAM_42985 a450660ceff98abe8b61dbea283ee977 330 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 299 1.3E-17 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_42985 a450660ceff98abe8b61dbea283ee977 330 Gene3D G3DSA:1.10.3720.10 85 293 7.2E-14 T 13-10-2018 IPR035906 MetI-like superfamily RAM_42985 a450660ceff98abe8b61dbea283ee977 330 SUPERFAMILY SSF161098 100 280 9.68E-17 T 13-10-2018 IPR035906 MetI-like superfamily RAM_11075 3e590a782ae1b3c8f4881ed9c78d82e7 661 TIGRFAM TIGR02123 TRAP_fused: TRAP transporter, 4TM/12TM fusion protein 44 657 2.6E-129 T 13-10-2018 IPR011853 TRAP C4-dicarboxylate transport system permease, fused DctM-DctQ RAM_11075 3e590a782ae1b3c8f4881ed9c78d82e7 661 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 138 571 3.6E-60 T 13-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RAM_04720 bc68cc838ff0258bdba53c3ac6df5547 226 SUPERFAMILY SSF81338 6 222 3.01E-51 T 13-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 RAM_04720 bc68cc838ff0258bdba53c3ac6df5547 226 Pfam PF00230 Major intrinsic protein 11 219 5.2E-35 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RAM_04720 bc68cc838ff0258bdba53c3ac6df5547 226 PRINTS PR00783 Major intrinsic protein family signature 60 79 1.5E-29 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RAM_04720 bc68cc838ff0258bdba53c3ac6df5547 226 PRINTS PR00783 Major intrinsic protein family signature 23 47 1.5E-29 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RAM_04720 bc68cc838ff0258bdba53c3ac6df5547 226 PRINTS PR00783 Major intrinsic protein family signature 202 222 1.5E-29 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RAM_04720 bc68cc838ff0258bdba53c3ac6df5547 226 PRINTS PR00783 Major intrinsic protein family signature 154 176 1.5E-29 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RAM_04720 bc68cc838ff0258bdba53c3ac6df5547 226 PRINTS PR00783 Major intrinsic protein family signature 115 133 1.5E-29 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RAM_04720 bc68cc838ff0258bdba53c3ac6df5547 226 Gene3D G3DSA:1.20.1080.10 1 225 6.4E-61 T 13-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 RAM_04720 bc68cc838ff0258bdba53c3ac6df5547 226 ProSitePatterns PS00221 MIP family signature. 41 49 - T 13-10-2018 IPR022357 Major intrinsic protein, conserved site Reactome: R-HSA-432047 RAM_31560 2e1ebc2917250f9e22b1785892037acd 318 SMART SM00943 14 200 7.6E-26 T 13-10-2018 IPR015330 DNA primase/polymerase, bifunctional, N-terminal RAM_31560 2e1ebc2917250f9e22b1785892037acd 318 Pfam PF09250 Bifunctional DNA primase/polymerase, N-terminal 14 199 7.4E-33 T 13-10-2018 IPR015330 DNA primase/polymerase, bifunctional, N-terminal RAM_31560 2e1ebc2917250f9e22b1785892037acd 318 SUPERFAMILY SSF56747 11 190 9.15E-19 T 13-10-2018 RAM_20815 51db2a271e21c6ae8738caebb4c4bcd2 271 Gene3D G3DSA:1.10.3720.10 1 261 1.7E-46 T 13-10-2018 IPR035906 MetI-like superfamily RAM_20815 51db2a271e21c6ae8738caebb4c4bcd2 271 SUPERFAMILY SSF161098 3 270 1.78E-48 T 13-10-2018 IPR035906 MetI-like superfamily RAM_20815 51db2a271e21c6ae8738caebb4c4bcd2 271 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 83 259 2.9E-14 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_13020 4ab0005163fd86f1a024cdbbd7063d8d 418 Pfam PF13520 Amino acid permease 23 373 2.2E-38 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RAM_13020 4ab0005163fd86f1a024cdbbd7063d8d 418 PIRSF PIRSF006060 3 413 4.0E-68 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RAM_13020 4ab0005163fd86f1a024cdbbd7063d8d 418 Gene3D G3DSA:1.20.1740.10 18 417 2.7E-80 T 13-10-2018 RAM_32080 7ce4f70e457a2f8c2da5227cf8ac21d4 360 Pfam PF00953 Glycosyl transferase family 4 88 277 2.7E-37 T 13-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 RAM_32080 7ce4f70e457a2f8c2da5227cf8ac21d4 360 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 15 348 1.8E-88 T 13-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RAM_32080 7ce4f70e457a2f8c2da5227cf8ac21d4 360 ProSitePatterns PS01348 MraY family signature 2. 181 192 - T 13-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RAM_32080 7ce4f70e457a2f8c2da5227cf8ac21d4 360 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 3 352 23.11 T 13-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RAM_32080 7ce4f70e457a2f8c2da5227cf8ac21d4 360 ProSitePatterns PS01347 MraY family signature 1. 46 58 - T 13-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RAM_32080 7ce4f70e457a2f8c2da5227cf8ac21d4 360 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 46 58 7.0E-6 T 13-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RAM_02800 125dc503fc1beefdd77a2128d6de4493 231 Pfam PF07335 Fungal chitosanase of glycosyl hydrolase group 75 85 218 2.2E-24 T 13-10-2018 IPR009939 Fungal chitosanase GO:0016977 KEGG: 00520+3.2.1.132 RAM_31680 b91035a2b6713bb3004f4492f7e09188 165 SUPERFAMILY SSF52206 21 101 2.48E-10 T 13-10-2018 IPR036490 Hypothetical protein MTH538 superfamily RAM_31680 b91035a2b6713bb3004f4492f7e09188 165 Pfam PF08937 MTH538 TIR-like domain (DUF1863) 3 103 1.2E-20 T 13-10-2018 IPR015032 MTH538 TIR-like domain RAM_32355 b74c655e6ffd1a52deb55542edcb1b08 185 Pfam PF00583 Acetyltransferase (GNAT) family 54 155 3.1E-6 T 13-10-2018 IPR000182 GNAT domain RAM_32355 b74c655e6ffd1a52deb55542edcb1b08 185 SUPERFAMILY SSF55729 2 166 6.67E-21 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_32355 b74c655e6ffd1a52deb55542edcb1b08 185 Gene3D G3DSA:3.40.630.30 5 180 7.3E-30 T 13-10-2018 RAM_41805 c88247a3ce022d9a4d80d7524ca08f67 274 Pfam PF13354 Beta-lactamase enzyme family 107 175 2.1E-5 T 13-10-2018 RAM_41805 c88247a3ce022d9a4d80d7524ca08f67 274 Gene3D G3DSA:3.40.710.10 37 270 3.6E-24 T 13-10-2018 RAM_41805 c88247a3ce022d9a4d80d7524ca08f67 274 SUPERFAMILY SSF56601 46 268 3.9E-21 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_11670 3615073ab6f7a9799210e1b27baff407 175 Pfam PF09534 Tryptophan-associated transmembrane protein (Trp_oprn_chp) 3 167 5.7E-28 T 13-10-2018 IPR019051 Trp biosynthesis associated, transmembrane protein, Oprn/Chp RAM_46845 82197155684dd9f0ecc6d3b2b1429a72 246 Gene3D G3DSA:3.40.50.720 1 246 1.0E-75 T 13-10-2018 RAM_46845 82197155684dd9f0ecc6d3b2b1429a72 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 76 87 5.7E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_46845 82197155684dd9f0ecc6d3b2b1429a72 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 5.7E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_46845 82197155684dd9f0ecc6d3b2b1429a72 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 210 230 5.7E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_46845 82197155684dd9f0ecc6d3b2b1429a72 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 2 19 5.7E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_46845 82197155684dd9f0ecc6d3b2b1429a72 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 5.7E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_46845 82197155684dd9f0ecc6d3b2b1429a72 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 5.7E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_46845 82197155684dd9f0ecc6d3b2b1429a72 246 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 9 245 8.0E-57 T 13-10-2018 RAM_46845 82197155684dd9f0ecc6d3b2b1429a72 246 SUPERFAMILY SSF51735 3 245 6.88E-73 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_46845 82197155684dd9f0ecc6d3b2b1429a72 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 9.1E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_46845 82197155684dd9f0ecc6d3b2b1429a72 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 76 87 9.1E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_46845 82197155684dd9f0ecc6d3b2b1429a72 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 9.1E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_03010 59f9cf6bd395775b4c48bd1e4f7fcb09 146 SUPERFAMILY SSF54637 16 137 2.84E-27 T 13-10-2018 IPR029069 HotDog domain superfamily RAM_03010 59f9cf6bd395775b4c48bd1e4f7fcb09 146 Pfam PF01575 MaoC like domain 24 109 7.8E-24 T 13-10-2018 IPR002539 MaoC-like dehydratase domain RAM_03010 59f9cf6bd395775b4c48bd1e4f7fcb09 146 Gene3D G3DSA:3.10.129.10 12 145 3.0E-41 T 13-10-2018 RAM_15795 993f692dddec0fec67be8e9a8543fd9d 417 Gene3D G3DSA:1.20.1250.20 3 391 1.9E-44 T 13-10-2018 RAM_15795 993f692dddec0fec67be8e9a8543fd9d 417 SUPERFAMILY SSF103473 7 390 5.36E-47 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_15795 993f692dddec0fec67be8e9a8543fd9d 417 Pfam PF05977 Transmembrane secretion effector 8 400 1.2E-27 T 13-10-2018 IPR010290 Transmembrane secretion effector RAM_32380 9b9a8d1ae0697b4673f8ac30d0a6dce5 319 Gene3D G3DSA:3.40.190.10 144 319 7.8E-6 T 13-10-2018 RAM_32380 9b9a8d1ae0697b4673f8ac30d0a6dce5 319 SUPERFAMILY SSF53850 5 311 4.34E-21 T 13-10-2018 RAM_18730 a2d824061ca6285cfac98cd5257dff7d 338 SUPERFAMILY SSF52266 154 337 1.13E-23 T 13-10-2018 RAM_18730 a2d824061ca6285cfac98cd5257dff7d 338 Gene3D G3DSA:2.60.120.260 26 146 9.7E-15 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RAM_18730 a2d824061ca6285cfac98cd5257dff7d 338 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 156 328 1.1E-18 T 13-10-2018 IPR013830 SGNH hydrolase-type esterase domain RAM_18730 a2d824061ca6285cfac98cd5257dff7d 338 Gene3D G3DSA:3.40.50.1110 151 338 8.2E-45 T 13-10-2018 IPR036514 SGNH hydrolase superfamily RAM_09570 3be230d2e80220d772ae54824d969898 347 Pfam PF02653 Branched-chain amino acid transport system / permease component 55 332 3.5E-49 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 RAM_26320 76373a003e9bd948c549a44a897f04ce 233 SUPERFAMILY SSF89562 11 175 1.09E-30 T 13-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily RAM_26320 76373a003e9bd948c549a44a897f04ce 233 Pfam PF03737 Aldolase/RraA 14 165 2.0E-21 T 13-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein RAM_26320 76373a003e9bd948c549a44a897f04ce 233 Gene3D G3DSA:3.50.30.100 1 188 1.9E-37 T 13-10-2018 RAM_38245 a3febd5bfa1738edade8d058157fba5f 340 PRINTS PR00069 Aldo-keto reductase signature 41 65 5.0E-5 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_38245 a3febd5bfa1738edade8d058157fba5f 340 PRINTS PR00069 Aldo-keto reductase signature 105 123 5.0E-5 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_38245 a3febd5bfa1738edade8d058157fba5f 340 PRINTS PR00069 Aldo-keto reductase signature 136 153 5.0E-5 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_38245 a3febd5bfa1738edade8d058157fba5f 340 Gene3D G3DSA:3.20.20.100 1 324 3.1E-109 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_38245 a3febd5bfa1738edade8d058157fba5f 340 SUPERFAMILY SSF51430 1 314 3.27E-95 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_38245 a3febd5bfa1738edade8d058157fba5f 340 Pfam PF00248 Aldo/keto reductase family 16 313 2.3E-70 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain RAM_14235 12dde9b7959ae1174bd03ace788b599c 76 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 3 73 4.1E-20 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RAM_14235 12dde9b7959ae1174bd03ace788b599c 76 Pfam PF03840 Preprotein translocase SecG subunit 4 72 7.5E-19 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RAM_33515 c381d28c817b9ccb439493ea9963ee61 357 SUPERFAMILY SSF81345 22 348 1.57E-72 T 13-10-2018 IPR037294 ABC transporter, BtuC-like RAM_33515 c381d28c817b9ccb439493ea9963ee61 357 Pfam PF01032 FecCD transport family 31 348 2.3E-83 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 RAM_33515 c381d28c817b9ccb439493ea9963ee61 357 Gene3D G3DSA:1.10.3470.10 20 353 2.6E-90 T 13-10-2018 IPR037294 ABC transporter, BtuC-like RAM_20865 0476937e151945478aba68f29a5c1763 186 Pfam PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain 13 124 7.4E-7 T 13-10-2018 IPR024344 Mycothiol-dependent maleylpyruvate isomerase, metal-binding domain GO:0046872 RAM_20865 0476937e151945478aba68f29a5c1763 186 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 12 179 8.1E-17 T 13-10-2018 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type RAM_20865 0476937e151945478aba68f29a5c1763 186 SUPERFAMILY SSF109854 3 130 3.2E-12 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_00545 da1168499bb7df062619dc573058ae63 360 Pfam PF01609 Transposase DDE domain 97 326 2.6E-16 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 RAM_00545 da1168499bb7df062619dc573058ae63 360 Pfam PF13808 DDE_Tnp_1-associated 1 80 4.4E-14 T 13-10-2018 IPR032806 H repeat-associated protein, N-terminal RAM_41305 ce75d041bafe408503cf54736ba03fc6 335 SUPERFAMILY SSF52540 3 238 6.14E-75 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_41305 ce75d041bafe408503cf54736ba03fc6 335 Pfam PF08402 TOBE domain 267 331 5.0E-7 T 13-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 RAM_41305 ce75d041bafe408503cf54736ba03fc6 335 SUPERFAMILY SSF50331 238 332 9.18E-9 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal RAM_41305 ce75d041bafe408503cf54736ba03fc6 335 Pfam PF00005 ABC transporter 20 160 1.3E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_41305 ce75d041bafe408503cf54736ba03fc6 335 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_41305 ce75d041bafe408503cf54736ba03fc6 335 SMART SM00382 27 210 9.2E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_41305 ce75d041bafe408503cf54736ba03fc6 335 Gene3D G3DSA:3.40.50.300 1 236 7.0E-71 T 13-10-2018 RAM_00780 4f98f3587931db0c2ff4fce3036334f9 386 Gene3D G3DSA:1.20.1250.20 1 376 1.8E-31 T 13-10-2018 RAM_00780 4f98f3587931db0c2ff4fce3036334f9 386 Pfam PF07690 Major Facilitator Superfamily 2 314 3.9E-22 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_00780 4f98f3587931db0c2ff4fce3036334f9 386 SUPERFAMILY SSF103473 3 376 7.98E-38 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_31520 f6e9ba32410eeeb8220b55c0d2154011 61 SUPERFAMILY SSF46955 7 58 9.7E-8 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily RAM_31520 f6e9ba32410eeeb8220b55c0d2154011 61 Pfam PF12728 Helix-turn-helix domain 8 58 2.1E-12 T 13-10-2018 RAM_24555 f59957f87443a1e956122363587f2703 124 Pfam PF03992 Antibiotic biosynthesis monooxygenase 24 93 3.5E-14 T 13-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain RAM_24555 f59957f87443a1e956122363587f2703 124 SUPERFAMILY SSF54909 24 97 4.65E-20 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_24555 f59957f87443a1e956122363587f2703 124 Gene3D G3DSA:3.30.70.100 20 109 3.1E-21 T 13-10-2018 RAM_19615 c6947e1bbc832efee035e108b0dacebf 136 SUPERFAMILY SSF50249 12 113 3.26E-11 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_19615 c6947e1bbc832efee035e108b0dacebf 136 Pfam PF01796 DUF35 OB-fold domain, acyl-CoA-associated 40 108 5.9E-16 T 13-10-2018 IPR002878 Domain of unknown function DUF35, OB-fold, C-terminal RAM_23475 f6b45679a8447649a1835cc31808560c 278 Gene3D G3DSA:3.20.20.140 4 271 2.4E-47 T 13-10-2018 RAM_23475 f6b45679a8447649a1835cc31808560c 278 SUPERFAMILY SSF89550 5 268 2.09E-27 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 RAM_23475 f6b45679a8447649a1835cc31808560c 278 Pfam PF02811 PHP domain 6 105 4.9E-7 T 13-10-2018 IPR004013 PHP domain GO:0003824 RAM_00130 1d12262cad162b4fcfdec16972784562 247 PIRSF PIRSF006648 1 247 5.4E-64 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 RAM_00130 1d12262cad162b4fcfdec16972784562 247 Pfam PF01061 ABC-2 type transporter 7 212 2.0E-26 T 13-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 RAM_14035 936d64f5d6e5231d9cf070ff04ecc1b6 552 Pfam PF08757 CotH kinase protein 95 310 2.1E-22 T 13-10-2018 IPR014867 Spore coat protein CotH RAM_17730 0a23b5f5541e2df1d6797845cf08ab59 254 Gene3D G3DSA:3.40.50.720 1 248 6.7E-51 T 13-10-2018 RAM_17730 0a23b5f5541e2df1d6797845cf08ab59 254 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_17730 0a23b5f5541e2df1d6797845cf08ab59 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 2.3E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17730 0a23b5f5541e2df1d6797845cf08ab59 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 2.3E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17730 0a23b5f5541e2df1d6797845cf08ab59 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 2.3E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17730 0a23b5f5541e2df1d6797845cf08ab59 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 2.3E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17730 0a23b5f5541e2df1d6797845cf08ab59 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 2.3E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17730 0a23b5f5541e2df1d6797845cf08ab59 254 Pfam PF00106 short chain dehydrogenase 7 193 1.9E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_17730 0a23b5f5541e2df1d6797845cf08ab59 254 SUPERFAMILY SSF51735 4 245 2.67E-50 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_41055 f146cdf784031c9ed5dbda700c49e68d 101 SUPERFAMILY SSF53271 14 100 6.67E-14 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like RAM_41055 f146cdf784031c9ed5dbda700c49e68d 101 Gene3D G3DSA:3.40.50.2020 1 101 4.7E-11 T 13-10-2018 RAM_21570 e97b393824c6513739c7de22f03f5136 456 Pfam PF13520 Amino acid permease 34 413 5.0E-29 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RAM_21570 e97b393824c6513739c7de22f03f5136 456 Gene3D G3DSA:1.20.1740.10 20 448 6.0E-45 T 13-10-2018 RAM_21570 e97b393824c6513739c7de22f03f5136 456 PIRSF PIRSF006060 7 450 5.6E-52 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RAM_31695 a003928b93080dbc04493dbdcc8357e0 767 Pfam PF05729 NACHT domain 137 258 8.7E-9 T 13-10-2018 IPR007111 NACHT nucleoside triphosphatase RAM_31695 a003928b93080dbc04493dbdcc8357e0 767 SUPERFAMILY SSF52540 116 235 4.8E-6 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_29365 7f7ca8a4c30f9af2a641066240da1335 283 Pfam PF01226 Formate/nitrite transporter 15 257 2.0E-57 T 13-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 RAM_29365 7f7ca8a4c30f9af2a641066240da1335 283 Gene3D G3DSA:1.20.1080.10 5 270 1.5E-68 T 13-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 RAM_29365 7f7ca8a4c30f9af2a641066240da1335 283 ProSitePatterns PS01006 Formate and nitrite transporters signature 2. 169 179 - T 13-10-2018 IPR024002 Formate/nitrite transporter, conserved site RAM_46130 cf69e1142b36817d342159a7439243cf 331 SUPERFAMILY SSF101478 3 327 8.76E-60 T 13-10-2018 IPR036705 ADP-ribosylation/Crystallin J1 superfamily RAM_46130 cf69e1142b36817d342159a7439243cf 331 Gene3D G3DSA:1.10.4080.10 1 330 1.7E-67 T 13-10-2018 IPR036705 ADP-ribosylation/Crystallin J1 superfamily RAM_46130 cf69e1142b36817d342159a7439243cf 331 Pfam PF03747 ADP-ribosylglycohydrolase 9 302 4.4E-55 T 13-10-2018 IPR005502 ADP-ribosylation/Crystallin J1 RAM_11650 c6b53dcca0ff4476a06ff638d8b1f229 357 Pfam PF12158 Protein of unknown function (DUF3592) 122 239 3.9E-7 T 13-10-2018 IPR021994 Protein of unknown function DUF3592 RAM_17300 23fc4e62e93d94cdefddb20c7a9fe064 209 Pfam PF00440 Bacterial regulatory proteins, tetR family 30 75 1.3E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_17300 23fc4e62e93d94cdefddb20c7a9fe064 209 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 50 73 6.1E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_17300 23fc4e62e93d94cdefddb20c7a9fe064 209 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 29 42 6.1E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_17300 23fc4e62e93d94cdefddb20c7a9fe064 209 Gene3D G3DSA:1.10.357.10 24 207 4.2E-43 T 13-10-2018 RAM_17300 23fc4e62e93d94cdefddb20c7a9fe064 209 SUPERFAMILY SSF46689 17 90 1.05E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_46770 2991ec0e8c0988e4e0ebbc78deb1632a 92 SUPERFAMILY SSF54909 1 85 1.09E-17 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_46770 2991ec0e8c0988e4e0ebbc78deb1632a 92 Pfam PF03795 YCII-related domain 11 83 8.3E-12 T 13-10-2018 IPR005545 YCII-related RAM_46770 2991ec0e8c0988e4e0ebbc78deb1632a 92 Gene3D G3DSA:3.30.70.1060 2 86 1.8E-10 T 13-10-2018 RAM_43170 2a7ef6e3d6e022c2984fbdfc40a22e24 298 Gene3D G3DSA:1.10.3720.10 47 294 1.5E-51 T 13-10-2018 IPR035906 MetI-like superfamily RAM_43170 2a7ef6e3d6e022c2984fbdfc40a22e24 298 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 289 3.6E-6 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_43170 2a7ef6e3d6e022c2984fbdfc40a22e24 298 SUPERFAMILY SSF161098 4 295 4.19E-41 T 13-10-2018 IPR035906 MetI-like superfamily RAM_17410 32dcb0c637b5a5db2cb19e22844deb17 397 SUPERFAMILY SSF103473 15 385 2.09E-34 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_17410 32dcb0c637b5a5db2cb19e22844deb17 397 Gene3D G3DSA:1.20.1250.20 3 380 9.3E-28 T 13-10-2018 RAM_17410 32dcb0c637b5a5db2cb19e22844deb17 397 Pfam PF05977 Transmembrane secretion effector 20 381 8.8E-22 T 13-10-2018 IPR010290 Transmembrane secretion effector RAM_37045 66199ca0bc95c1a23a1d9e3f6e5f2951 64 SUPERFAMILY SSF54862 2 62 1.84E-14 T 13-10-2018 RAM_37045 66199ca0bc95c1a23a1d9e3f6e5f2951 64 Pfam PF13370 4Fe-4S single cluster domain of Ferredoxin I 5 61 9.3E-15 T 13-10-2018 RAM_37045 66199ca0bc95c1a23a1d9e3f6e5f2951 64 PRINTS PR00352 3Fe-4S ferredoxin signature 16 26 5.4E-7 T 13-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 RAM_37045 66199ca0bc95c1a23a1d9e3f6e5f2951 64 PRINTS PR00352 3Fe-4S ferredoxin signature 48 60 5.4E-7 T 13-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 RAM_37045 66199ca0bc95c1a23a1d9e3f6e5f2951 64 PRINTS PR00352 3Fe-4S ferredoxin signature 5 16 5.4E-7 T 13-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 RAM_37045 66199ca0bc95c1a23a1d9e3f6e5f2951 64 Gene3D G3DSA:3.30.70.20 1 64 1.1E-19 T 13-10-2018 RAM_40885 46d741db77a6534fb41f4e6b43361747 201 PIRSF PIRSF006324 2 201 3.1E-55 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RAM_40885 46d741db77a6534fb41f4e6b43361747 201 Pfam PF01810 LysE type translocator 17 200 9.1E-36 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RAM_07890 4122fe149d6d8f7c3aac9ad7b71d9807 233 Gene3D G3DSA:3.50.50.60 50 232 3.0E-47 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_07890 4122fe149d6d8f7c3aac9ad7b71d9807 233 SUPERFAMILY SSF51905 18 229 7.94E-27 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_46005 6b699d703ac594f3270008f483a75267 390 Pfam PF03129 Anticodon binding domain 312 380 1.8E-4 T 13-10-2018 IPR004154 Anticodon-binding RAM_46005 6b699d703ac594f3270008f483a75267 390 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 85 288 9.1E-27 T 13-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 RAM_46005 6b699d703ac594f3270008f483a75267 390 SUPERFAMILY SSF55681 3 286 1.44E-80 T 13-10-2018 RAM_46005 6b699d703ac594f3270008f483a75267 390 Gene3D G3DSA:3.30.930.10 1 292 8.4E-92 T 13-10-2018 RAM_46005 6b699d703ac594f3270008f483a75267 390 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 3 386 8.2E-124 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RAM_46005 6b699d703ac594f3270008f483a75267 390 SUPERFAMILY SSF52954 289 387 2.87E-14 T 13-10-2018 RAM_46005 6b699d703ac594f3270008f483a75267 390 PRINTS PR01047 Threonyl-tRNA synthetase signature 91 119 2.7E-44 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RAM_46005 6b699d703ac594f3270008f483a75267 390 PRINTS PR01047 Threonyl-tRNA synthetase signature 294 306 2.7E-44 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RAM_46005 6b699d703ac594f3270008f483a75267 390 PRINTS PR01047 Threonyl-tRNA synthetase signature 267 280 2.7E-44 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RAM_46005 6b699d703ac594f3270008f483a75267 390 PRINTS PR01047 Threonyl-tRNA synthetase signature 124 147 2.7E-44 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RAM_46005 6b699d703ac594f3270008f483a75267 390 PRINTS PR01047 Threonyl-tRNA synthetase signature 224 252 2.7E-44 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RAM_46005 6b699d703ac594f3270008f483a75267 390 Gene3D G3DSA:3.40.50.800 293 389 9.4E-14 T 13-10-2018 IPR036621 Anticodon-binding domain superfamily RAM_14255 cf605038e79874b0f089ae4dca95e51d 360 Pfam PF10128 Glucose-6-phosphate dehydrogenase subunit 56 301 2.5E-88 T 13-10-2018 IPR004555 Glucose-6-phosphate dehydrogenase assembly protein OpcA RAM_14255 cf605038e79874b0f089ae4dca95e51d 360 TIGRFAM TIGR00534 OpcA: glucose-6-phosphate dehydrogenase assembly protein OpcA 6 306 3.6E-79 T 13-10-2018 IPR004555 Glucose-6-phosphate dehydrogenase assembly protein OpcA RAM_41300 a86f6d4dfb45c8cb740447136b73b578 291 Pfam PF12679 ABC-2 family transporter protein 24 289 1.6E-11 T 13-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 RAM_40795 cb36857dc0d61b3f1572671ca0ad857f 305 Pfam PF05572 Pregnancy-associated plasma protein-A 182 298 1.1E-17 T 13-10-2018 IPR008754 Peptidase M43, pregnancy-associated plasma-A Reactome: R-HSA-381426 RAM_40795 cb36857dc0d61b3f1572671ca0ad857f 305 Gene3D G3DSA:3.40.390.10 87 305 9.3E-70 T 13-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 RAM_40795 cb36857dc0d61b3f1572671ca0ad857f 305 SUPERFAMILY SSF55486 111 298 1.09E-27 T 13-10-2018 RAM_05555 ada55aaef824de02eee404429e97e267 279 Pfam PF02195 ParB-like nuclease domain 90 145 1.0E-4 T 13-10-2018 IPR003115 ParB/Sulfiredoxin RAM_05555 ada55aaef824de02eee404429e97e267 279 SUPERFAMILY SSF110849 85 144 6.8E-8 T 13-10-2018 IPR036086 ParB/Sulfiredoxin superfamily RAM_45760 dc5915bde7a554bba44f2d8c930379ab 303 Gene3D G3DSA:3.40.50.150 29 290 4.8E-62 T 13-10-2018 RAM_45760 dc5915bde7a554bba44f2d8c930379ab 303 SUPERFAMILY SSF53335 49 258 1.93E-22 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_36300 f7aa4cb37cfb9758afc423396eb2aa93 261 Pfam PF13398 Peptidase M50B-like 50 250 5.4E-56 T 13-10-2018 RAM_18985 a3994abb287e19e4ee5f61d7ec6237f5 241 SMART SM00332 7 236 5.2E-8 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_18985 a3994abb287e19e4ee5f61d7ec6237f5 241 Gene3D G3DSA:3.60.40.10 2 240 3.8E-41 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_18985 a3994abb287e19e4ee5f61d7ec6237f5 241 Pfam PF13672 Protein phosphatase 2C 19 204 1.4E-14 T 13-10-2018 RAM_18985 a3994abb287e19e4ee5f61d7ec6237f5 241 SUPERFAMILY SSF81606 6 238 1.7E-41 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_18985 a3994abb287e19e4ee5f61d7ec6237f5 241 SMART SM00331 8 238 3.3E-16 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_15170 4825e1eec3600509d388e86cfc3c9424 158 Gene3D G3DSA:1.10.10.10 5 144 1.2E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_15170 4825e1eec3600509d388e86cfc3c9424 158 Pfam PF12802 MarR family 47 92 3.2E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_15170 4825e1eec3600509d388e86cfc3c9424 158 SMART SM00347 30 129 3.7E-9 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_15170 4825e1eec3600509d388e86cfc3c9424 158 SUPERFAMILY SSF46785 14 142 8.61E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_31990 5cb7240d25413064ebf217bb71425b85 72 SUPERFAMILY SSF160582 8 70 2.88E-26 T 13-10-2018 IPR038020 MbtH-like domain superfamily RAM_31990 5cb7240d25413064ebf217bb71425b85 72 Gene3D G3DSA:3.90.820.10 3 72 4.1E-30 T 13-10-2018 RAM_31990 5cb7240d25413064ebf217bb71425b85 72 SMART SM00923 5 55 5.6E-19 T 13-10-2018 IPR005153 MbtH-like domain RAM_31990 5cb7240d25413064ebf217bb71425b85 72 Pfam PF03621 MbtH-like protein 8 54 2.1E-20 T 13-10-2018 IPR005153 MbtH-like domain RAM_35145 2c694242a01085e384d2f8f0a2d70abb 451 Gene3D G3DSA:1.20.1250.20 227 434 1.1E-18 T 13-10-2018 RAM_35145 2c694242a01085e384d2f8f0a2d70abb 451 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 2 382 1.1E-73 T 13-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 RAM_35145 2c694242a01085e384d2f8f0a2d70abb 451 Gene3D G3DSA:1.20.1250.20 1 171 1.9E-37 T 13-10-2018 RAM_35145 2c694242a01085e384d2f8f0a2d70abb 451 SUPERFAMILY SSF103473 2 431 2.75E-65 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_35145 2c694242a01085e384d2f8f0a2d70abb 451 Pfam PF07690 Major Facilitator Superfamily 3 259 1.9E-35 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_21780 026ccc5581a5bd54099aac83854613e9 288 Pfam PF00535 Glycosyl transferase family 2 6 158 4.7E-21 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RAM_21780 026ccc5581a5bd54099aac83854613e9 288 SUPERFAMILY SSF53448 4 229 1.59E-40 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_21780 026ccc5581a5bd54099aac83854613e9 288 Gene3D G3DSA:3.90.550.10 2 211 2.5E-35 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_09785 17c6f35d3d2111cc32a515d9b4c4dc57 158 Pfam PF01910 Thiamine-binding protein 20 82 1.1E-5 T 13-10-2018 IPR002767 Thiamine-binding protein RAM_09785 17c6f35d3d2111cc32a515d9b4c4dc57 158 SUPERFAMILY SSF89957 4 80 2.35E-8 T 13-10-2018 IPR029756 MTH1187/YkoF-like RAM_09785 17c6f35d3d2111cc32a515d9b4c4dc57 158 Pfam PF13309 HTH domain 93 154 1.7E-17 T 13-10-2018 IPR039445 Transcriptional regulator DauR-like, HTH domain RAM_47640 c040701b337efc8facae5344e2b63c1b 352 Pfam PF00480 ROK family 118 260 1.5E-28 T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 RAM_47640 c040701b337efc8facae5344e2b63c1b 352 Gene3D G3DSA:3.30.420.40 208 268 1.1E-20 T 13-10-2018 RAM_47640 c040701b337efc8facae5344e2b63c1b 352 ProSitePatterns PS01125 ROK family signature. 211 238 - T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 RAM_47640 c040701b337efc8facae5344e2b63c1b 352 SUPERFAMILY SSF53067 83 344 1.03E-35 T 13-10-2018 RAM_47640 c040701b337efc8facae5344e2b63c1b 352 SUPERFAMILY SSF46785 11 74 1.8E-13 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_47640 c040701b337efc8facae5344e2b63c1b 352 Gene3D G3DSA:1.10.10.10 2 78 1.4E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_47640 c040701b337efc8facae5344e2b63c1b 352 Gene3D G3DSA:3.30.420.40 269 347 4.0E-8 T 13-10-2018 RAM_47640 c040701b337efc8facae5344e2b63c1b 352 Gene3D G3DSA:3.30.420.40 80 207 8.5E-22 T 13-10-2018 RAM_42685 74937ae5bd0bbe2892a496102661064b 301 SUPERFAMILY SSF53448 11 290 1.94E-55 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_42685 74937ae5bd0bbe2892a496102661064b 301 Gene3D G3DSA:3.90.550.10 3 300 2.8E-81 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_42685 74937ae5bd0bbe2892a496102661064b 301 Pfam PF00483 Nucleotidyl transferase 13 275 9.3E-26 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 RAM_19155 94be03eac700ed96691afae679b0f76d 253 SUPERFAMILY SSF49870 36 250 3.4E-34 T 13-10-2018 IPR037176 Osmotin/thaumatin-like superfamily RAM_19155 94be03eac700ed96691afae679b0f76d 253 Gene3D G3DSA:2.60.110.10 35 250 3.2E-41 T 13-10-2018 IPR037176 Osmotin/thaumatin-like superfamily RAM_19155 94be03eac700ed96691afae679b0f76d 253 SMART SM00205 37 250 1.4E-12 T 13-10-2018 IPR001938 Thaumatin family RAM_19155 94be03eac700ed96691afae679b0f76d 253 PIRSF PIRSF002703 1 252 1.7E-30 T 13-10-2018 IPR001938 Thaumatin family RAM_19155 94be03eac700ed96691afae679b0f76d 253 Pfam PF00314 Thaumatin family 41 249 5.6E-31 T 13-10-2018 IPR001938 Thaumatin family RAM_40725 b81a2319a9bb0134393b043db705f742 256 SUPERFAMILY SSF52266 26 243 2.83E-55 T 13-10-2018 RAM_40725 b81a2319a9bb0134393b043db705f742 256 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 28 243 5.7E-22 T 13-10-2018 IPR013830 SGNH hydrolase-type esterase domain RAM_40725 b81a2319a9bb0134393b043db705f742 256 Gene3D G3DSA:3.40.50.1110 24 252 5.9E-68 T 13-10-2018 IPR036514 SGNH hydrolase superfamily RAM_15540 69c36de5a4acfd3491edacd9d9c9fec0 405 SUPERFAMILY SSF81606 184 379 2.88E-10 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_15540 69c36de5a4acfd3491edacd9d9c9fec0 405 SMART SM00331 166 381 2.0E-10 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_15540 69c36de5a4acfd3491edacd9d9c9fec0 405 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 193 381 4.3E-29 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_15540 69c36de5a4acfd3491edacd9d9c9fec0 405 Gene3D G3DSA:3.60.40.10 165 383 8.6E-38 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_07830 b843981a7b5bf5d5e05f9cbd942054bd 263 Pfam PF00005 ABC transporter 37 177 8.8E-23 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_07830 b843981a7b5bf5d5e05f9cbd942054bd 263 SMART SM00382 46 228 2.2E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_07830 b843981a7b5bf5d5e05f9cbd942054bd 263 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_07830 b843981a7b5bf5d5e05f9cbd942054bd 263 Gene3D G3DSA:3.40.50.300 16 258 8.1E-58 T 13-10-2018 RAM_07830 b843981a7b5bf5d5e05f9cbd942054bd 263 SUPERFAMILY SSF52540 18 252 3.47E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_08090 0883baf68b82bcd7add73191ae300c6f 254 Gene3D G3DSA:3.40.50.300 3 242 4.0E-55 T 13-10-2018 RAM_08090 0883baf68b82bcd7add73191ae300c6f 254 Pfam PF00005 ABC transporter 22 177 4.6E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_08090 0883baf68b82bcd7add73191ae300c6f 254 SUPERFAMILY SSF52540 5 232 1.5E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_08090 0883baf68b82bcd7add73191ae300c6f 254 SMART SM00382 30 225 9.1E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_01080 99ac83b512788b72799727670c3e6eef 350 Gene3D G3DSA:3.40.50.12780 2 313 2.6E-13 T 13-10-2018 RAM_01080 99ac83b512788b72799727670c3e6eef 350 Pfam PF04443 Acyl-protein synthetase, LuxE 7 346 1.7E-46 T 13-10-2018 IPR007534 Acyl-protein synthetase, LuxE GO:0008218|GO:0047474 MetaCyc: PWY-7723 RAM_01080 99ac83b512788b72799727670c3e6eef 350 SUPERFAMILY SSF56801 154 314 2.01E-5 T 13-10-2018 RAM_11560 334c5e2566d184c5e2d8122ff57118a9 245 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 4 241 32.889 T 13-10-2018 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 RAM_11560 334c5e2566d184c5e2d8122ff57118a9 245 Pfam PF00977 Histidine biosynthesis protein 5 234 7.6E-62 T 13-10-2018 IPR006062 Histidine biosynthesis GO:0000105 RAM_11560 334c5e2566d184c5e2d8122ff57118a9 245 TIGRFAM TIGR01919 hisA-trpF: bifunctional HisA/TrpF protein 2 242 5.6E-124 T 13-10-2018 IPR010188 Bifunctional HisA/TrpF GO:0000105|GO:0000162|GO:0003949|GO:0004640|GO:0005737 KEGG: 00340+5.3.1.16 RAM_11560 334c5e2566d184c5e2d8122ff57118a9 245 SUPERFAMILY SSF51366 3 240 6.99E-60 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 RAM_11560 334c5e2566d184c5e2d8122ff57118a9 245 Gene3D G3DSA:3.20.20.70 1 245 9.6E-90 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_04625 d8210179fadbe4da267f62a26088f95c 387 Gene3D G3DSA:3.40.50.2000 207 370 2.1E-106 T 13-10-2018 RAM_04625 d8210179fadbe4da267f62a26088f95c 387 Gene3D G3DSA:3.40.50.2000 2 379 2.1E-106 T 13-10-2018 RAM_04625 d8210179fadbe4da267f62a26088f95c 387 SUPERFAMILY SSF53756 2 383 2.9E-69 T 13-10-2018 RAM_04625 d8210179fadbe4da267f62a26088f95c 387 Pfam PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 272 365 2.9E-7 T 13-10-2018 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0016758 Reactome: R-HSA-156588 RAM_12970 c8fab6cf7c1cf6a559deb693d17377a3 193 Pfam PF01738 Dienelactone hydrolase family 4 187 1.6E-17 T 13-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 RAM_12970 c8fab6cf7c1cf6a559deb693d17377a3 193 SUPERFAMILY SSF53474 4 187 7.38E-27 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_12970 c8fab6cf7c1cf6a559deb693d17377a3 193 Gene3D G3DSA:3.40.50.1820 3 189 5.5E-27 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_32245 23e15d16eacaf50218a30cc4b8f748a3 203 Gene3D G3DSA:3.40.109.10 1 198 1.6E-34 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RAM_32245 23e15d16eacaf50218a30cc4b8f748a3 203 Pfam PF00881 Nitroreductase family 11 175 1.9E-20 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 RAM_32245 23e15d16eacaf50218a30cc4b8f748a3 203 SUPERFAMILY SSF55469 1 193 4.97E-33 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RAM_46835 51adafb6ca3a8e27f85f1ce4054d445e 137 Gene3D G3DSA:3.10.180.10 9 132 8.5E-32 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_46835 51adafb6ca3a8e27f85f1ce4054d445e 137 SUPERFAMILY SSF54593 3 136 4.59E-31 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_46835 51adafb6ca3a8e27f85f1ce4054d445e 137 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 131 9.7E-21 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RAM_02840 89e2f1f12d89024fb115f216aae77a00 508 SUPERFAMILY SSF51126 56 362 5.29E-22 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor RAM_02840 89e2f1f12d89024fb115f216aae77a00 508 SMART SM00710 161 183 26.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_02840 89e2f1f12d89024fb115f216aae77a00 508 SMART SM00710 269 290 1300.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_02840 89e2f1f12d89024fb115f216aae77a00 508 SMART SM00710 209 244 3800.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_02840 89e2f1f12d89024fb115f216aae77a00 508 SMART SM00710 245 267 80.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_02840 89e2f1f12d89024fb115f216aae77a00 508 SMART SM00710 292 329 10.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_02840 89e2f1f12d89024fb115f216aae77a00 508 SMART SM00710 340 361 590.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RAM_02840 89e2f1f12d89024fb115f216aae77a00 508 Pfam PF13229 Right handed beta helix region 161 318 1.5E-11 T 13-10-2018 IPR039448 Right handed beta helix domain RAM_02840 89e2f1f12d89024fb115f216aae77a00 508 Gene3D G3DSA:2.160.20.10 134 364 1.1E-21 T 13-10-2018 IPR012334 Pectin lyase fold RAM_21030 b0c9b0c24eb08cb1995b8c0e88a61cba 134 Pfam PF07498 Rho termination factor, N-terminal domain 95 122 4.4E-6 T 13-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 RAM_21030 b0c9b0c24eb08cb1995b8c0e88a61cba 134 SUPERFAMILY SSF140376 3 62 2.75E-14 T 13-10-2018 IPR037205 ChaB superfamily RAM_21030 b0c9b0c24eb08cb1995b8c0e88a61cba 134 Pfam PF06150 ChaB 7 61 3.5E-16 T 13-10-2018 IPR009317 ChaB RAM_21030 b0c9b0c24eb08cb1995b8c0e88a61cba 134 Gene3D G3DSA:1.10.1740.70 2 62 5.6E-6 T 13-10-2018 RAM_38175 c841cf0b943d07921ef5e51e65668cf9 389 SUPERFAMILY SSF55785 3 107 3.14E-13 T 13-10-2018 IPR035965 PAS domain superfamily RAM_38175 c841cf0b943d07921ef5e51e65668cf9 389 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 8 127 2.2E-7 T 13-10-2018 IPR000014 PAS domain RAM_38175 c841cf0b943d07921ef5e51e65668cf9 389 SMART SM00331 160 381 1.4E-32 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_38175 c841cf0b943d07921ef5e51e65668cf9 389 SUPERFAMILY SSF81606 163 346 1.41E-8 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_38175 c841cf0b943d07921ef5e51e65668cf9 389 Gene3D G3DSA:3.60.40.10 132 380 1.9E-58 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_38175 c841cf0b943d07921ef5e51e65668cf9 389 Gene3D G3DSA:3.30.450.20 17 131 1.1E-9 T 13-10-2018 RAM_38175 c841cf0b943d07921ef5e51e65668cf9 389 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 189 380 3.4E-41 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_42605 365326af8e6563f8341f001a69f55b60 204 PIRSF PIRSF006324 1 202 1.1E-54 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RAM_42605 365326af8e6563f8341f001a69f55b60 204 Pfam PF01810 LysE type translocator 10 202 6.6E-35 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RAM_39830 bcfbceb036d837b68bd4765f21fb62ae 68 Gene3D G3DSA:2.30.30.320 1 68 8.3E-30 T 13-10-2018 IPR037135 DUF1653-like domain superfamily RAM_39830 bcfbceb036d837b68bd4765f21fb62ae 68 Pfam PF07866 Protein of unknown function (DUF1653) 5 64 4.7E-28 T 13-10-2018 IPR023387 DUF1653-like domain RAM_11690 7bdda077439e11b9b5b3dace6b4aa87c 125 Gene3D G3DSA:1.10.1660.10 2 123 9.5E-31 T 13-10-2018 RAM_11690 7bdda077439e11b9b5b3dace6b4aa87c 125 SMART SM00422 4 73 3.4E-23 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_11690 7bdda077439e11b9b5b3dace6b4aa87c 125 Pfam PF13411 MerR HTH family regulatory protein 4 65 6.9E-14 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAM_11690 7bdda077439e11b9b5b3dace6b4aa87c 125 SUPERFAMILY SSF46955 4 118 7.69E-29 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily RAM_42800 7ec559aa081a63a4db253cfc0a76f6f7 202 Pfam PF03458 UPF0126 domain 5 79 2.9E-22 T 13-10-2018 IPR005115 Uncharacterised domain UPF0126 RAM_42800 7ec559aa081a63a4db253cfc0a76f6f7 202 Pfam PF03458 UPF0126 domain 91 162 3.0E-18 T 13-10-2018 IPR005115 Uncharacterised domain UPF0126 RAM_12990 d1240e61a854a402b9e5cfb193190278 337 SUPERFAMILY SSF53901 214 326 1.01E-12 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_12990 d1240e61a854a402b9e5cfb193190278 337 Gene3D G3DSA:3.40.47.10 2 336 7.3E-39 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_12990 d1240e61a854a402b9e5cfb193190278 337 SUPERFAMILY SSF53901 1 210 2.78E-10 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_15050 b8c4e38d775fcbd2d7e8db99df45b1ec 284 TIGRFAM TIGR03544 DivI1A_domain: DivIVA domain 3 39 7.3E-15 T 13-10-2018 IPR019933 DivIVA domain RAM_15050 b8c4e38d775fcbd2d7e8db99df45b1ec 284 SUPERFAMILY SSF58113 119 247 9.94E-5 T 13-10-2018 RAM_15050 b8c4e38d775fcbd2d7e8db99df45b1ec 284 Pfam PF05103 DivIVA protein 3 66 4.1E-12 T 13-10-2018 IPR007793 DivIVA family RAM_44485 7909464634507fdc366705481964bd00 501 Pfam PF06738 Putative threonine/serine exporter 75 317 1.3E-65 T 13-10-2018 IPR010619 Putative threonine/serine exporter RAM_44485 7909464634507fdc366705481964bd00 501 Pfam PF12821 Threonine/Serine exporter, ThrE 348 467 6.1E-15 T 13-10-2018 IPR024528 Threonine/Serine exporter, ThrE RAM_26805 dc3a62b499a4b0472ff5ccfcad397e76 160 Gene3D G3DSA:3.40.630.30 1 158 1.3E-41 T 13-10-2018 RAM_26805 dc3a62b499a4b0472ff5ccfcad397e76 160 Pfam PF00583 Acetyltransferase (GNAT) family 32 133 8.5E-21 T 13-10-2018 IPR000182 GNAT domain RAM_26805 dc3a62b499a4b0472ff5ccfcad397e76 160 SUPERFAMILY SSF55729 2 158 4.46E-36 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_40750 b8aafbd8ceed2ec26f1a76d2a2d2576d 372 PIRSF PIRSF000443 16 372 7.1E-124 T 13-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 RAM_40750 b8aafbd8ceed2ec26f1a76d2a2d2576d 372 Hamap MF_00296 Homoserine O-acetyltransferase [metXA]. 15 372 30.583 T 13-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 RAM_40750 b8aafbd8ceed2ec26f1a76d2a2d2576d 372 TIGRFAM TIGR01392 homoserO_Ac_trn: homoserine O-acetyltransferase 27 371 4.0E-131 T 13-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 RAM_40750 b8aafbd8ceed2ec26f1a76d2a2d2576d 372 SUPERFAMILY SSF53474 26 371 3.67E-90 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_40750 b8aafbd8ceed2ec26f1a76d2a2d2576d 372 Gene3D G3DSA:1.10.1740.110 190 294 2.7E-127 T 13-10-2018 RAM_40750 b8aafbd8ceed2ec26f1a76d2a2d2576d 372 Pfam PF00561 alpha/beta hydrolase fold 55 358 1.3E-29 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_40750 b8aafbd8ceed2ec26f1a76d2a2d2576d 372 Gene3D G3DSA:3.40.50.1820 31 365 2.7E-127 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_45250 6b6f9c922f795c9ad7ce84246adca46e 117 SUPERFAMILY SSF51182 16 109 4.14E-18 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RAM_45250 6b6f9c922f795c9ad7ce84246adca46e 117 Pfam PF07883 Cupin domain 41 101 1.7E-13 T 13-10-2018 IPR013096 Cupin 2, conserved barrel RAM_45250 6b6f9c922f795c9ad7ce84246adca46e 117 Gene3D G3DSA:2.60.120.10 21 112 5.1E-18 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_12775 0aec35f56bdcc835191361095ca2096c 389 Gene3D G3DSA:3.40.47.10 1 387 1.5E-95 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_12775 0aec35f56bdcc835191361095ca2096c 389 SUPERFAMILY SSF53901 236 375 8.32E-14 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_12775 0aec35f56bdcc835191361095ca2096c 389 Pfam PF00108 Thiolase, N-terminal domain 24 211 9.3E-9 T 13-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 RAM_12775 0aec35f56bdcc835191361095ca2096c 389 PIRSF PIRSF000429 3 341 1.9E-19 T 13-10-2018 IPR002155 Thiolase GO:0016747 RAM_12775 0aec35f56bdcc835191361095ca2096c 389 SUPERFAMILY SSF53901 4 234 2.69E-25 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_22015 496f7b072e4ade2c4fd190ee8021f15b 544 Pfam PF02332 Methane/Phenol/Toluene Hydroxylase 13 238 1.9E-55 T 13-10-2018 IPR003430 Methane/phenol/toluene hydroxylase GO:0006725|GO:0055114 RAM_22015 496f7b072e4ade2c4fd190ee8021f15b 544 SUPERFAMILY SSF47240 4 507 1.18E-122 T 13-10-2018 IPR009078 Ferritin-like superfamily RAM_22015 496f7b072e4ade2c4fd190ee8021f15b 544 Gene3D G3DSA:1.10.620.20 1 515 4.9E-167 T 13-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 RAM_41725 6f2e5d8201c2ad9b1947fcd348b27866 274 SUPERFAMILY SSF161098 4 272 1.27E-57 T 13-10-2018 IPR035906 MetI-like superfamily RAM_41725 6f2e5d8201c2ad9b1947fcd348b27866 274 Gene3D G3DSA:1.10.3720.10 3 266 4.4E-53 T 13-10-2018 IPR035906 MetI-like superfamily RAM_41725 6f2e5d8201c2ad9b1947fcd348b27866 274 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 89 268 4.4E-15 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_07040 05172737d0e07f880e26fe9d580c5ab4 246 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_07040 05172737d0e07f880e26fe9d580c5ab4 246 Pfam PF00005 ABC transporter 28 174 7.8E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_07040 05172737d0e07f880e26fe9d580c5ab4 246 SMART SM00382 37 234 5.6E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_07040 05172737d0e07f880e26fe9d580c5ab4 246 SUPERFAMILY SSF52540 9 227 1.11E-69 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_07040 05172737d0e07f880e26fe9d580c5ab4 246 Gene3D G3DSA:3.40.50.300 6 242 2.5E-67 T 13-10-2018 RAM_10060 38b2dba3527fecb6c181d69abf1bd1f9 192 SUPERFAMILY SSF52540 3 141 2.33E-24 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_10060 38b2dba3527fecb6c181d69abf1bd1f9 192 Gene3D G3DSA:3.40.50.300 1 147 1.1E-28 T 13-10-2018 RAM_10060 38b2dba3527fecb6c181d69abf1bd1f9 192 Pfam PF00005 ABC transporter 19 141 2.0E-15 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_34270 b6470e7857a39e620d1d639aa290f718 189 Pfam PF05685 Putative restriction endonuclease 27 176 4.2E-32 T 13-10-2018 IPR008538 Domain of unknown function DUF820 RAM_34270 b6470e7857a39e620d1d639aa290f718 189 SUPERFAMILY SSF52980 14 160 8.58E-30 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 RAM_34270 b6470e7857a39e620d1d639aa290f718 189 Gene3D G3DSA:3.90.1570.10 10 177 9.5E-30 T 13-10-2018 RAM_20045 f91007117114c59dfefa014795db8cb7 491 Gene3D G3DSA:2.80.10.50 350 399 9.4E-14 T 13-10-2018 RAM_20045 f91007117114c59dfefa014795db8cb7 491 SUPERFAMILY SSF50370 350 489 7.12E-40 T 13-10-2018 IPR035992 Ricin B-like lectins RAM_20045 f91007117114c59dfefa014795db8cb7 491 Pfam PF04616 Glycosyl hydrolases family 43 83 266 1.1E-20 T 13-10-2018 IPR006710 Glycoside hydrolase, family 43 GO:0004553|GO:0005975 RAM_20045 f91007117114c59dfefa014795db8cb7 491 Gene3D G3DSA:2.80.10.50 400 444 2.8E-14 T 13-10-2018 RAM_20045 f91007117114c59dfefa014795db8cb7 491 Gene3D G3DSA:2.80.10.50 445 491 3.8E-7 T 13-10-2018 RAM_20045 f91007117114c59dfefa014795db8cb7 491 Gene3D G3DSA:2.115.10.20 23 347 1.4E-89 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily RAM_20045 f91007117114c59dfefa014795db8cb7 491 SUPERFAMILY SSF75005 60 340 2.14E-49 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily RAM_20045 f91007117114c59dfefa014795db8cb7 491 SMART SM00458 353 491 1.2E-14 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_20045 f91007117114c59dfefa014795db8cb7 491 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 435 490 1.5E-7 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_20045 f91007117114c59dfefa014795db8cb7 491 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 342 428 7.8E-23 T 13-10-2018 IPR000772 Ricin B, lectin domain RAM_20885 0feeb4792c4b2b4034dbf4e4996e2945 279 Gene3D G3DSA:3.40.50.720 1 273 2.6E-40 T 13-10-2018 RAM_20885 0feeb4792c4b2b4034dbf4e4996e2945 279 SUPERFAMILY SSF51735 1 270 1.54E-41 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_20885 0feeb4792c4b2b4034dbf4e4996e2945 279 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 196 8.1E-12 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 RAM_28570 a91942b792de673582d19115e97f1ea5 154 Pfam PF08044 Domain of unknown function (DUF1707) 18 70 3.8E-17 T 13-10-2018 IPR012551 Protein of unknown function DUF1707 RAM_19800 d02539d24c44905500426cc3e353da19 251 Gene3D G3DSA:3.40.50.10320 4 239 5.1E-67 T 13-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 RAM_19800 d02539d24c44905500426cc3e353da19 251 SUPERFAMILY SSF102588 15 244 4.58E-43 T 13-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 RAM_19800 d02539d24c44905500426cc3e353da19 251 Pfam PF02585 GlcNAc-PI de-N-acetylase 18 144 2.2E-23 T 13-10-2018 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related Reactome: R-HSA-162710 RAM_33855 39bc9d259840a160a1d7c8b659c186b7 424 TIGRFAM TIGR00277 HDIG: HDIG domain 71 107 1.7E-7 T 13-10-2018 IPR006675 HDIG domain RAM_33855 39bc9d259840a160a1d7c8b659c186b7 424 Pfam PF13286 Phosphohydrolase-associated domain 326 416 1.1E-20 T 13-10-2018 IPR026875 Phosphohydrolase-associated domain RAM_33855 39bc9d259840a160a1d7c8b659c186b7 424 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 29 415 1.7E-76 T 13-10-2018 IPR006261 dNTP triphosphohydrolase GO:0016793 RAM_33855 39bc9d259840a160a1d7c8b659c186b7 424 SUPERFAMILY SSF109604 27 236 3.46E-55 T 13-10-2018 RAM_33855 39bc9d259840a160a1d7c8b659c186b7 424 SMART SM00471 66 225 3.9E-13 T 13-10-2018 IPR003607 HD/PDEase domain RAM_33855 39bc9d259840a160a1d7c8b659c186b7 424 Pfam PF01966 HD domain 70 215 3.3E-20 T 13-10-2018 IPR006674 HD domain RAM_33855 39bc9d259840a160a1d7c8b659c186b7 424 Hamap MF_01212 Deoxyguanosinetriphosphate triphosphohydrolase-like protein. 11 419 30.529 T 13-10-2018 IPR023023 dNTP triphosphohydrolase, type 2 GO:0016793 RAM_46885 792b38c3fde8567a3987444ac49ae6a2 334 PIRSF PIRSF021505 1 218 1.1E-27 T 13-10-2018 IPR014512 Predicted O-glycosyl hydrolase RAM_46885 792b38c3fde8567a3987444ac49ae6a2 334 PIRSF PIRSF021505 215 306 6.4E-4 T 13-10-2018 IPR014512 Predicted O-glycosyl hydrolase RAM_46885 792b38c3fde8567a3987444ac49ae6a2 334 Pfam PF03663 Glycosyl hydrolase family 76 22 299 3.6E-22 T 13-10-2018 IPR005198 Glycoside hydrolase, family 76 RAM_46885 792b38c3fde8567a3987444ac49ae6a2 334 Gene3D G3DSA:1.50.10.20 6 334 6.2E-80 T 13-10-2018 RAM_46885 792b38c3fde8567a3987444ac49ae6a2 334 SUPERFAMILY SSF48208 19 303 8.08E-21 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_04395 811005fc3f9b13a78645eec3a6b3f69c 374 SUPERFAMILY SSF57997 89 262 1.37E-5 T 13-10-2018 RAM_04395 811005fc3f9b13a78645eec3a6b3f69c 374 Gene3D G3DSA:3.90.20.10 62 200 1.9E-8 T 13-10-2018 RAM_30625 7188e5c68448fcb0d2e463a9a0768714 484 Gene3D G3DSA:3.40.605.10 11 482 3.3E-192 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RAM_30625 7188e5c68448fcb0d2e463a9a0768714 484 Gene3D G3DSA:3.40.309.10 233 417 3.3E-192 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RAM_30625 7188e5c68448fcb0d2e463a9a0768714 484 SUPERFAMILY SSF53720 5 478 8.38E-82 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RAM_30625 7188e5c68448fcb0d2e463a9a0768714 484 Pfam PF00171 Aldehyde dehydrogenase family 3 422 3.4E-35 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RAM_10590 3a50d1b8ff408173cb3207fc01c1019a 136 TIGRFAM TIGR00149 TIGR00149_YjbQ: secondary thiamine-phosphate synthase enzyme 5 123 1.3E-20 T 13-10-2018 IPR001602 Uncharacterised protein family UPF0047 RAM_10590 3a50d1b8ff408173cb3207fc01c1019a 136 PIRSF PIRSF004681 1 136 6.2E-28 T 13-10-2018 IPR001602 Uncharacterised protein family UPF0047 RAM_10590 3a50d1b8ff408173cb3207fc01c1019a 136 Gene3D G3DSA:2.60.120.460 1 135 2.9E-29 T 13-10-2018 IPR035917 YjbQ-like superfamily RAM_10590 3a50d1b8ff408173cb3207fc01c1019a 136 SUPERFAMILY SSF111038 2 133 4.71E-33 T 13-10-2018 IPR035917 YjbQ-like superfamily RAM_10590 3a50d1b8ff408173cb3207fc01c1019a 136 Pfam PF01894 Uncharacterised protein family UPF0047 18 131 4.1E-23 T 13-10-2018 IPR001602 Uncharacterised protein family UPF0047 RAM_00065 c46e868df56737b5ce431de632113995 146 Gene3D G3DSA:1.10.860.10 1 103 9.0E-7 T 13-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal RAM_30885 2dc7d4910d74187a3dcaf072e88df0b6 391 Pfam PF06889 Protein of unknown function (DUF1266) 186 382 3.5E-35 T 13-10-2018 IPR009677 Protein of unknown function DUF1266 RAM_36030 89a868cf8e200a6b38e8571c0bb59200 190 Gene3D G3DSA:1.10.357.10 12 188 6.0E-44 T 13-10-2018 RAM_36030 89a868cf8e200a6b38e8571c0bb59200 190 SUPERFAMILY SSF46689 8 77 2.41E-20 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_36030 89a868cf8e200a6b38e8571c0bb59200 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 21 34 1.0E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_36030 89a868cf8e200a6b38e8571c0bb59200 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 42 65 1.0E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_36030 89a868cf8e200a6b38e8571c0bb59200 190 Pfam PF00440 Bacterial regulatory proteins, tetR family 21 67 2.3E-20 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_36030 89a868cf8e200a6b38e8571c0bb59200 190 SUPERFAMILY SSF48498 82 186 1.67E-15 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_16640 b1828636ef92a282faf0452f7514ad60 367 SUPERFAMILY SSF51735 160 334 1.23E-39 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_16640 b1828636ef92a282faf0452f7514ad60 367 SMART SM00829 13 365 9.2E-7 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RAM_16640 b1828636ef92a282faf0452f7514ad60 367 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 154 5.7E-24 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RAM_16640 b1828636ef92a282faf0452f7514ad60 367 SUPERFAMILY SSF50129 2 194 5.17E-59 T 13-10-2018 IPR011032 GroES-like superfamily RAM_16640 b1828636ef92a282faf0452f7514ad60 367 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 61 75 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 RAM_16640 b1828636ef92a282faf0452f7514ad60 367 Gene3D G3DSA:3.90.180.10 8 362 1.4E-134 T 13-10-2018 RAM_16640 b1828636ef92a282faf0452f7514ad60 367 Gene3D G3DSA:3.40.50.720 175 311 1.4E-134 T 13-10-2018 RAM_16640 b1828636ef92a282faf0452f7514ad60 367 Pfam PF00107 Zinc-binding dehydrogenase 198 326 1.4E-24 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RAM_19515 dd9f475a896a4061c8998186957367b3 258 Gene3D G3DSA:3.90.226.10 2 253 6.6E-76 T 13-10-2018 RAM_19515 dd9f475a896a4061c8998186957367b3 258 Pfam PF00378 Enoyl-CoA hydratase/isomerase 14 244 1.2E-41 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RAM_19515 dd9f475a896a4061c8998186957367b3 258 SUPERFAMILY SSF52096 5 253 2.13E-66 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_10780 41b1237d1b9ee46a7026b41a6c3f2623 720 Pfam PF02534 Type IV secretory system Conjugative DNA transfer 464 635 7.4E-7 T 13-10-2018 IPR003688 Type IV secretion system protein TraG/VirD4 GO:0009291|GO:0016020 RAM_10780 41b1237d1b9ee46a7026b41a6c3f2623 720 SUPERFAMILY SSF52540 273 672 4.79E-36 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_10780 41b1237d1b9ee46a7026b41a6c3f2623 720 Gene3D G3DSA:3.40.50.300 486 663 9.4E-20 T 13-10-2018 RAM_10780 41b1237d1b9ee46a7026b41a6c3f2623 720 Gene3D G3DSA:3.40.50.300 287 404 5.9E-7 T 13-10-2018 RAM_18665 0dbb54ca6edba6b8d83dd22479d1a43b 237 Pfam PF06197 Protein of unknown function (DUF998) 22 214 1.1E-15 T 13-10-2018 IPR009339 Protein of unknown function DUF998 RAM_04275 d7bf2b47d79e80bdca80d2a2cc9d2612 252 Pfam PF12706 Beta-lactamase superfamily domain 54 220 3.5E-23 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_04275 d7bf2b47d79e80bdca80d2a2cc9d2612 252 SMART SM00849 23 219 1.3E-6 T 13-10-2018 IPR001279 Metallo-beta-lactamase RAM_04275 d7bf2b47d79e80bdca80d2a2cc9d2612 252 Gene3D G3DSA:3.60.15.10 2 251 1.3E-64 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_04275 d7bf2b47d79e80bdca80d2a2cc9d2612 252 SUPERFAMILY SSF56281 7 251 3.54E-45 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAM_01855 5e2e06a9e85f91d44a47ae257ddd1635 770 SUPERFAMILY SSF52540 386 603 1.38E-10 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_01855 5e2e06a9e85f91d44a47ae257ddd1635 770 Gene3D G3DSA:3.40.50.300 385 673 9.2E-32 T 13-10-2018 RAM_21465 f2eff65d070b4a329847db1df6d3f902 162 Pfam PF13420 Acetyltransferase (GNAT) domain 5 155 3.1E-17 T 13-10-2018 RAM_21465 f2eff65d070b4a329847db1df6d3f902 162 SUPERFAMILY SSF55729 3 161 8.29E-29 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_21465 f2eff65d070b4a329847db1df6d3f902 162 Gene3D G3DSA:3.40.630.30 1 162 1.2E-46 T 13-10-2018 RAM_45835 fd78531e3a9acbdb8190f93ef06c9b5a 148 Pfam PF04075 F420H(2)-dependent quinone reductase 33 104 6.0E-9 T 13-10-2018 IPR004378 F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 RAM_45835 fd78531e3a9acbdb8190f93ef06c9b5a 148 TIGRFAM TIGR00026 hi_GC_TIGR00026: deazaflavin-dependent oxidoreductase, nitroreductase family 35 113 1.2E-15 T 13-10-2018 IPR004378 F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 RAM_45835 fd78531e3a9acbdb8190f93ef06c9b5a 148 Gene3D G3DSA:2.30.110.10 24 129 2.7E-12 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_13965 57567bbbfbed7c541c9662941b752b2d 428 SUPERFAMILY SSF51338 3 427 1.36E-25 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_13965 57567bbbfbed7c541c9662941b752b2d 428 Hamap MF_00220_B Dihydroorotase [pyrC]. 3 424 41.719 T 13-10-2018 IPR004722 Dihydroorotase GO:0004151|GO:0006221|GO:0046872 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RAM_13965 57567bbbfbed7c541c9662941b752b2d 428 TIGRFAM TIGR00857 pyrC_multi: dihydroorotase, multifunctional complex type 17 425 3.3E-141 T 13-10-2018 RAM_13965 57567bbbfbed7c541c9662941b752b2d 428 SUPERFAMILY SSF51556 51 366 1.16E-92 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_13965 57567bbbfbed7c541c9662941b752b2d 428 ProSitePatterns PS00483 Dihydroorotase signature 2. 301 312 - T 13-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RAM_13965 57567bbbfbed7c541c9662941b752b2d 428 Pfam PF01979 Amidohydrolase family 47 420 3.6E-19 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RAM_13965 57567bbbfbed7c541c9662941b752b2d 428 Gene3D G3DSA:2.30.40.10 10 420 9.6E-129 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_13965 57567bbbfbed7c541c9662941b752b2d 428 Gene3D G3DSA:3.20.20.140 52 367 9.6E-129 T 13-10-2018 RAM_02990 fcfc731649a98430e4911fdcf8b5bab1 315 SUPERFAMILY SSF55729 118 307 4.8E-21 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_02990 fcfc731649a98430e4911fdcf8b5bab1 315 Gene3D G3DSA:3.40.630.30 151 308 8.8E-20 T 13-10-2018 RAM_02990 fcfc731649a98430e4911fdcf8b5bab1 315 Pfam PF00583 Acetyltransferase (GNAT) family 200 301 5.7E-11 T 13-10-2018 IPR000182 GNAT domain RAM_08255 267a332b0232f80c3df21490d1c20be3 256 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 13 230 3.0E-25 T 13-10-2018 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type RAM_08255 267a332b0232f80c3df21490d1c20be3 256 Pfam PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain 14 135 5.0E-16 T 13-10-2018 IPR024344 Mycothiol-dependent maleylpyruvate isomerase, metal-binding domain GO:0046872 RAM_08255 267a332b0232f80c3df21490d1c20be3 256 SUPERFAMILY SSF109854 7 141 3.97E-8 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_08255 267a332b0232f80c3df21490d1c20be3 256 Pfam PF07398 MDMPI C-terminal domain 147 247 8.1E-9 T 13-10-2018 IPR010872 MDMPI C-terminal RAM_45605 6109910863c88a8885cbd7dad1a4251e 129 Pfam PF09335 SNARE associated Golgi protein 8 91 1.2E-8 T 13-10-2018 IPR032816 SNARE associated Golgi protein RAM_06460 741f41fbe6b9d80da1092970b54a2989 375 Pfam PF01384 Phosphate transporter family 21 319 1.5E-81 T 13-10-2018 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 RAM_10640 71bf1eb18af4de9a1579d4c2ba0ad786 243 SUPERFAMILY SSF55681 10 235 5.97E-45 T 13-10-2018 RAM_10640 71bf1eb18af4de9a1579d4c2ba0ad786 243 Gene3D G3DSA:3.30.930.10 7 240 3.5E-48 T 13-10-2018 RAM_38210 0c65901debc7bebd620327ba34e9dbf6 476 Pfam PF15892 BNR repeat-containing family member 71 379 1.1E-84 T 13-10-2018 IPR039469 BNR repeat-containing family member RAM_47675 a758aa4ab299206d1e60212e69e3aca8 171 Hamap MF_00984 Single-stranded DNA-binding protein. 4 113 30.977 T 13-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 RAM_47675 a758aa4ab299206d1e60212e69e3aca8 171 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 5 121 1.6E-33 T 13-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 RAM_47675 a758aa4ab299206d1e60212e69e3aca8 171 Pfam PF00436 Single-strand binding protein family 7 106 5.6E-30 T 13-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 RAM_47675 a758aa4ab299206d1e60212e69e3aca8 171 Gene3D G3DSA:2.40.50.140 1 120 2.5E-42 T 13-10-2018 RAM_47675 a758aa4ab299206d1e60212e69e3aca8 171 SUPERFAMILY SSF50249 6 171 1.86E-46 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_04110 663f8c7576a532179e39f1371330391e 266 Pfam PF17270 Family of unknown function (DUF5336) 8 169 1.8E-36 T 13-10-2018 IPR035166 Protein of unknown function DUF5336 RAM_08105 da0a2f1d9c85a31f0bceaaeca95443a0 1035 Pfam PF07971 Glycosyl hydrolase family 92 248 721 1.8E-159 T 13-10-2018 IPR012939 Glycosyl hydrolase family 92 RAM_08105 da0a2f1d9c85a31f0bceaaeca95443a0 1035 SUPERFAMILY SSF48208 272 669 1.11E-20 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_08105 da0a2f1d9c85a31f0bceaaeca95443a0 1035 TIGRFAM TIGR01180 aman2_put: putative alpha-1,2-mannosidase 13 724 5.0E-151 T 13-10-2018 IPR005887 Alpha-1,2-mannosidase, putative RAM_42380 c632c1d764053e1a2dd08f2013bb7ecd 199 Gene3D G3DSA:1.10.10.10 3 93 1.7E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_42380 c632c1d764053e1a2dd08f2013bb7ecd 199 Pfam PF03551 Transcriptional regulator PadR-like family 8 84 6.8E-10 T 13-10-2018 IPR005149 Transcription regulator PadR, N-terminal RAM_42380 c632c1d764053e1a2dd08f2013bb7ecd 199 SUPERFAMILY SSF46785 4 132 5.51E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_25095 691bc0471577e9a12b20e4b5f0533d9c 412 Gene3D G3DSA:1.20.120.640 330 412 3.6E-27 T 13-10-2018 RAM_25095 691bc0471577e9a12b20e4b5f0533d9c 412 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 40 51 4.1E-24 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RAM_25095 691bc0471577e9a12b20e4b5f0533d9c 412 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 244 265 4.1E-24 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RAM_25095 691bc0471577e9a12b20e4b5f0533d9c 412 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 213 231 4.1E-24 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RAM_25095 691bc0471577e9a12b20e4b5f0533d9c 412 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 76 85 4.1E-24 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RAM_25095 691bc0471577e9a12b20e4b5f0533d9c 412 SUPERFAMILY SSF52374 29 336 8.85E-67 T 13-10-2018 RAM_25095 691bc0471577e9a12b20e4b5f0533d9c 412 Gene3D G3DSA:3.40.50.620 1 328 3.3E-99 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAM_25095 691bc0471577e9a12b20e4b5f0533d9c 412 TIGRFAM TIGR03447 mycothiol_MshC: cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase 2 412 1.6E-210 T 13-10-2018 IPR017812 Mycothiol ligase MshC GO:0010125|GO:0035446 RAM_25095 691bc0471577e9a12b20e4b5f0533d9c 412 Hamap MF_01697 L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [mshC]. 9 412 52.957 T 13-10-2018 IPR017812 Mycothiol ligase MshC GO:0010125|GO:0035446 RAM_25095 691bc0471577e9a12b20e4b5f0533d9c 412 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 37 336 3.1E-81 T 13-10-2018 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 RAM_39465 609add9bd7ebf3ffd1dcfbe135f94432 218 Gene3D G3DSA:1.20.910.10 3 217 1.1E-8 T 13-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 RAM_39465 609add9bd7ebf3ffd1dcfbe135f94432 218 SUPERFAMILY SSF48613 6 212 4.17E-23 T 13-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 RAM_13585 b3b9d8661922aea32007b15700616c67 114 Pfam PF03780 Asp23 family, cell envelope-related function 41 103 4.1E-7 T 13-10-2018 IPR005531 Alkaline shock protein Asp23 RAM_13245 793488108bacb605ddd34627c2eddce1 167 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]. 4 146 31.472 T 13-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 RAM_13245 793488108bacb605ddd34627c2eddce1 167 SUPERFAMILY SSF51283 2 145 6.41E-48 T 13-10-2018 IPR036157 dUTPase-like superfamily RAM_13245 793488108bacb605ddd34627c2eddce1 167 Pfam PF00692 dUTPase 16 145 1.4E-33 T 13-10-2018 IPR029054 dUTPase-like RAM_13245 793488108bacb605ddd34627c2eddce1 167 Gene3D G3DSA:2.70.40.10 2 150 7.6E-52 T 13-10-2018 IPR036157 dUTPase-like superfamily RAM_13245 793488108bacb605ddd34627c2eddce1 167 TIGRFAM TIGR00576 dut: dUTP diphosphatase 7 145 5.6E-50 T 13-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 RAM_36215 d3b8880498fc6fafc8e47c7a49008600 239 TIGRFAM TIGR00715 precor6x_red: precorrin-6x reductase 2 237 1.3E-42 T 13-10-2018 IPR003723 Precorrin-6x reductase GO:0009236|GO:0016994|GO:0055114 RAM_36215 d3b8880498fc6fafc8e47c7a49008600 239 Pfam PF02571 Precorrin-6x reductase CbiJ/CobK 2 236 8.6E-70 T 13-10-2018 IPR003723 Precorrin-6x reductase GO:0009236|GO:0016994|GO:0055114 RAM_34375 4314be7241ff79257cd0742eb54010d7 199 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 63 1.6E-12 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_34375 4314be7241ff79257cd0742eb54010d7 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 19 32 1.0E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_34375 4314be7241ff79257cd0742eb54010d7 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 40 63 1.0E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_34375 4314be7241ff79257cd0742eb54010d7 199 SUPERFAMILY SSF48498 77 190 3.19E-24 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_34375 4314be7241ff79257cd0742eb54010d7 199 Gene3D G3DSA:1.10.357.10 58 196 7.0E-34 T 13-10-2018 RAM_34375 4314be7241ff79257cd0742eb54010d7 199 SUPERFAMILY SSF46689 9 71 1.55E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_34375 4314be7241ff79257cd0742eb54010d7 199 Gene3D G3DSA:1.10.10.60 3 57 1.6E-24 T 13-10-2018 RAM_34375 4314be7241ff79257cd0742eb54010d7 199 Pfam PF16859 Bacterial transcriptional repressor C-terminal 76 187 2.5E-29 T 13-10-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RAM_28820 f56d05b2b04ce33f6fc0315174abaacc 161 SUPERFAMILY SSF51735 11 97 4.41E-17 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_28820 f56d05b2b04ce33f6fc0315174abaacc 161 Gene3D G3DSA:3.40.50.720 4 96 8.8E-18 T 13-10-2018 RAM_28820 f56d05b2b04ce33f6fc0315174abaacc 161 Pfam PF00106 short chain dehydrogenase 11 93 3.2E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_32665 d655dfdf923602f5cd928de41c490e72 409 TIGRFAM TIGR00350 lytR_cpsA_psr: cell envelope-related function transcriptional attenuator common domain 106 275 1.2E-35 T 13-10-2018 IPR004474 Cell envelope-related transcriptional attenuator domain RAM_32665 d655dfdf923602f5cd928de41c490e72 409 Pfam PF03816 Cell envelope-related transcriptional attenuator domain 106 275 2.6E-43 T 13-10-2018 IPR004474 Cell envelope-related transcriptional attenuator domain RAM_32665 d655dfdf923602f5cd928de41c490e72 409 Gene3D G3DSA:1.10.260.150 61 378 6.7E-73 T 13-10-2018 RAM_03750 d12359bd6f140ed24d6bae45c7fd8ea1 274 SUPERFAMILY SSF53474 29 259 1.97E-25 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_03750 d12359bd6f140ed24d6bae45c7fd8ea1 274 Pfam PF12740 Chlorophyllase enzyme 33 150 4.3E-10 T 13-10-2018 IPR017395 Chlorophyllase GO:0015996|GO:0047746 KEGG: 00860+3.1.1.14|MetaCyc: PWY-5098|MetaCyc: PWY-6927|MetaCyc: PWY-7164 RAM_03750 d12359bd6f140ed24d6bae45c7fd8ea1 274 Gene3D G3DSA:3.40.50.1820 1 271 7.9E-38 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_05635 060d2cb2b8c36fa14518d295e049f887 201 Gene3D G3DSA:1.20.1260.10 1 201 7.9E-73 T 13-10-2018 IPR012347 Ferritin-like RAM_05635 060d2cb2b8c36fa14518d295e049f887 201 SUPERFAMILY SSF47240 6 113 2.18E-6 T 13-10-2018 IPR009078 Ferritin-like superfamily RAM_05635 060d2cb2b8c36fa14518d295e049f887 201 Pfam PF13794 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like 2 172 7.9E-77 T 13-10-2018 RAM_10350 72d720d197c4bd511b631cfd4afe7f0f 207 SUPERFAMILY SSF53335 36 161 1.3E-25 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_10350 72d720d197c4bd511b631cfd4afe7f0f 207 Gene3D G3DSA:3.40.50.150 11 172 9.1E-25 T 13-10-2018 RAM_10350 72d720d197c4bd511b631cfd4afe7f0f 207 Pfam PF13489 Methyltransferase domain 27 133 3.7E-14 T 13-10-2018 RAM_13675 30c5903ad6bc086c38dec5b744656171 110 SUPERFAMILY SSF54913 6 103 9.56E-35 T 13-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta RAM_13675 30c5903ad6bc086c38dec5b744656171 110 Pfam PF02641 Uncharacterized ACR, COG1993 7 102 5.0E-41 T 13-10-2018 IPR003793 Domain of unknown function DUF190 RAM_13675 30c5903ad6bc086c38dec5b744656171 110 Gene3D G3DSA:3.30.70.120 3 110 3.0E-44 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal RAM_34465 b5cda677917618ba5f375ecd0ad53472 211 Gene3D G3DSA:3.40.50.150 3 177 1.8E-27 T 13-10-2018 RAM_34465 b5cda677917618ba5f375ecd0ad53472 211 Pfam PF08241 Methyltransferase domain 25 118 1.7E-16 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 RAM_34465 b5cda677917618ba5f375ecd0ad53472 211 SUPERFAMILY SSF53335 4 137 1.17E-28 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_01205 c17e790c37a7143c704c391cb110ddfd 302 SUPERFAMILY SSF53448 16 271 1.0E-30 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_01205 c17e790c37a7143c704c391cb110ddfd 302 Gene3D G3DSA:3.90.550.10 11 223 2.8E-18 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_01205 c17e790c37a7143c704c391cb110ddfd 302 Pfam PF00535 Glycosyl transferase family 2 16 134 5.2E-13 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RAM_47240 da28094b138248daf5ceb66caacf6da7 315 Pfam PF04168 A predicted alpha-helical domain with a conserved ER motif. 1 300 3.9E-79 T 13-10-2018 IPR007296 Domain of unknown function DUF403 RAM_17280 409217cee865dc6f7718d72e46b876e5 315 Gene3D G3DSA:3.40.50.1820 9 315 3.2E-99 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_17280 409217cee865dc6f7718d72e46b876e5 315 Pfam PF12697 Alpha/beta hydrolase family 34 305 1.2E-23 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_17280 409217cee865dc6f7718d72e46b876e5 315 PRINTS PR00412 Epoxide hydrolase signature 104 117 3.2E-27 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_17280 409217cee865dc6f7718d72e46b876e5 315 PRINTS PR00412 Epoxide hydrolase signature 118 131 3.2E-27 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_17280 409217cee865dc6f7718d72e46b876e5 315 PRINTS PR00412 Epoxide hydrolase signature 58 73 3.2E-27 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_17280 409217cee865dc6f7718d72e46b876e5 315 PRINTS PR00412 Epoxide hydrolase signature 38 56 3.2E-27 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_17280 409217cee865dc6f7718d72e46b876e5 315 PRINTS PR00412 Epoxide hydrolase signature 289 311 3.2E-27 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_17280 409217cee865dc6f7718d72e46b876e5 315 SUPERFAMILY SSF53474 11 314 1.02E-78 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_10390 6e2802b1f07bd8b7a71fd2888e3f36ca 267 PIRSF PIRSF006648 1 266 4.2E-63 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 RAM_10390 6e2802b1f07bd8b7a71fd2888e3f36ca 267 Pfam PF01061 ABC-2 type transporter 13 219 8.8E-25 T 13-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 RAM_29140 ec024dcb019dfc653c6f9ed115aa7f90 309 SUPERFAMILY SSF53213 2 302 1.57E-58 T 13-10-2018 RAM_29140 ec024dcb019dfc653c6f9ed115aa7f90 309 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 7 300 1.4E-40 T 13-10-2018 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 RAM_13645 984712a4d206ebcff9b1ff7ff928ba89 106 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 56 71 6.3E-12 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_13645 984712a4d206ebcff9b1ff7ff928ba89 106 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 41 56 6.3E-12 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_13645 984712a4d206ebcff9b1ff7ff928ba89 106 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 9 24 6.3E-12 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_13645 984712a4d206ebcff9b1ff7ff928ba89 106 SMART SM00418 7 85 1.7E-25 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_13645 984712a4d206ebcff9b1ff7ff928ba89 106 Gene3D G3DSA:1.10.10.10 6 106 4.4E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_13645 984712a4d206ebcff9b1ff7ff928ba89 106 SUPERFAMILY SSF46785 7 101 6.39E-28 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_13645 984712a4d206ebcff9b1ff7ff928ba89 106 Pfam PF12840 Helix-turn-helix domain 7 64 4.2E-17 T 13-10-2018 RAM_02405 838de102a83a528f64e30d8bc671d513 347 Gene3D G3DSA:3.40.50.720 3 318 2.6E-40 T 13-10-2018 RAM_02405 838de102a83a528f64e30d8bc671d513 347 Pfam PF01370 NAD dependent epimerase/dehydratase family 6 236 1.2E-19 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 RAM_02405 838de102a83a528f64e30d8bc671d513 347 SUPERFAMILY SSF51735 4 316 3.9E-40 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_34840 08f759752f956540e329d5bb4fdbea88 323 TIGRFAM TIGR04187 GRASP_SAV_5884: ATP-grasp ribosomal peptide maturase, SAV_5884 family 9 318 2.5E-115 T 13-10-2018 IPR026449 ATP-grasp ribosomal peptide maturase, SAV-5884 family RAM_34840 08f759752f956540e329d5bb4fdbea88 323 Gene3D G3DSA:3.30.470.20 214 320 7.6E-19 T 13-10-2018 RAM_34840 08f759752f956540e329d5bb4fdbea88 323 Pfam PF08443 RimK-like ATP-grasp domain 138 317 1.7E-4 T 13-10-2018 IPR013651 ATP-grasp fold, RimK-type Reactome: R-HSA-70614 RAM_34840 08f759752f956540e329d5bb4fdbea88 323 SUPERFAMILY SSF56059 130 323 2.7E-18 T 13-10-2018 RAM_41085 2e14257b500bdb5aa9b257ccbd3858ee 322 Pfam PF08279 HTH domain 9 60 9.8E-15 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 RAM_41085 2e14257b500bdb5aa9b257ccbd3858ee 322 Gene3D G3DSA:1.10.10.10 1 64 7.2E-14 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_41085 2e14257b500bdb5aa9b257ccbd3858ee 322 Pfam PF13280 WYL domain 144 317 1.6E-37 T 13-10-2018 IPR026881 WYL domain RAM_41085 2e14257b500bdb5aa9b257ccbd3858ee 322 SUPERFAMILY SSF46785 4 63 4.8E-10 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_00300 4ceb6c3e9d15d9359bd99c609d407e66 124 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 31 121 4.1E-31 T 13-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain RAM_00300 4ceb6c3e9d15d9359bd99c609d407e66 124 Gene3D G3DSA:3.10.50.40 12 124 5.0E-40 T 13-10-2018 RAM_00300 4ceb6c3e9d15d9359bd99c609d407e66 124 SUPERFAMILY SSF54534 16 123 1.53E-38 T 13-10-2018 RAM_29210 99aef77e7f969c3dc4ac84c56adf2dfc 384 Pfam PF13631 Cytochrome b(N-terminal)/b6/petB 119 276 2.3E-57 T 13-10-2018 IPR005797 Cytochrome b/b6, N-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 RAM_29210 99aef77e7f969c3dc4ac84c56adf2dfc 384 SUPERFAMILY SSF81342 18 277 1.57E-58 T 13-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 RAM_29210 99aef77e7f969c3dc4ac84c56adf2dfc 384 Gene3D G3DSA:1.20.810.10 12 293 2.0E-74 T 13-10-2018 IPR027387 Cytochrome b/b6-like domain superfamily Reactome: R-HSA-611105 RAM_40010 94642d5f80c4594028e444587874c20d 422 Pfam PF04188 Mannosyltransferase (PIG-V) 77 221 1.3E-5 T 13-10-2018 IPR007315 GPI mannosyltransferase 2 GO:0004584|GO:0006506 Reactome: R-HSA-162710 RAM_44450 3e588389d34b4dd70e35a8cd8417675d 387 ProDom PD095338 YXII PLASMID 236 369 6.0E-16 T 13-10-2018 IPR020323 Protein of unknown function DUF2716 RAM_44450 3e588389d34b4dd70e35a8cd8417675d 387 Pfam PF10898 Protein of unknown function (DUF2716) 237 367 1.0E-45 T 13-10-2018 IPR020323 Protein of unknown function DUF2716 RAM_43330 18c4cd2b8f4e856190bcbe46dcb248fe 415 SUPERFAMILY SSF103473 19 406 4.45E-37 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_43330 18c4cd2b8f4e856190bcbe46dcb248fe 415 Pfam PF05977 Transmembrane secretion effector 14 403 1.0E-34 T 13-10-2018 IPR010290 Transmembrane secretion effector RAM_43330 18c4cd2b8f4e856190bcbe46dcb248fe 415 Gene3D G3DSA:1.20.1250.20 18 404 1.9E-34 T 13-10-2018 RAM_26605 b23aafcdcd3a1a1eeed737e28124845a 429 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 294 301 3.0E-6 T 13-10-2018 RAM_26605 b23aafcdcd3a1a1eeed737e28124845a 429 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 159 184 3.0E-6 T 13-10-2018 RAM_26605 b23aafcdcd3a1a1eeed737e28124845a 429 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 2 24 3.0E-6 T 13-10-2018 RAM_26605 b23aafcdcd3a1a1eeed737e28124845a 429 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 99 117 3.5E-12 T 13-10-2018 RAM_26605 b23aafcdcd3a1a1eeed737e28124845a 429 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 279 301 3.5E-12 T 13-10-2018 RAM_26605 b23aafcdcd3a1a1eeed737e28124845a 429 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 159 177 3.5E-12 T 13-10-2018 RAM_26605 b23aafcdcd3a1a1eeed737e28124845a 429 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 3 22 3.5E-12 T 13-10-2018 RAM_26605 b23aafcdcd3a1a1eeed737e28124845a 429 SUPERFAMILY SSF51905 1 175 1.2E-29 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_26605 b23aafcdcd3a1a1eeed737e28124845a 429 Gene3D G3DSA:3.50.50.100 1 393 3.6E-103 T 13-10-2018 RAM_26605 b23aafcdcd3a1a1eeed737e28124845a 429 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 2 324 1.1E-57 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAM_26605 b23aafcdcd3a1a1eeed737e28124845a 429 SUPERFAMILY SSF51905 150 335 1.52E-20 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_13595 3b98c0b5db5bd00832c04ac83ebf9360 145 Pfam PF03780 Asp23 family, cell envelope-related function 21 131 6.7E-30 T 13-10-2018 IPR005531 Alkaline shock protein Asp23 RAM_46930 d4b49f066ec99b188b2a66c586e4bb1f 815 Pfam PF02687 FtsX-like permease family 283 379 1.5E-8 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 RAM_46930 d4b49f066ec99b188b2a66c586e4bb1f 815 Pfam PF02687 FtsX-like permease family 717 803 3.4E-8 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 RAM_35435 5dc8870d08e21f066801857b4ebd028b 267 Gene3D G3DSA:3.40.50.150 36 239 8.6E-8 T 13-10-2018 RAM_35435 5dc8870d08e21f066801857b4ebd028b 267 SUPERFAMILY SSF53335 39 198 9.73E-10 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_08865 3ed51797b5502fedd4376677a6e9ff14 159 Gene3D G3DSA:3.40.630.30 1 158 1.0E-30 T 13-10-2018 RAM_08865 3ed51797b5502fedd4376677a6e9ff14 159 Pfam PF00583 Acetyltransferase (GNAT) family 36 134 2.4E-7 T 13-10-2018 IPR000182 GNAT domain RAM_08865 3ed51797b5502fedd4376677a6e9ff14 159 SUPERFAMILY SSF55729 7 143 1.89E-20 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_01615 0dc6b823f3c428c3172a2d658c066cef 237 Pfam PF14325 Domain of unknown function (DUF4383) 18 141 7.0E-25 T 13-10-2018 IPR025492 Protein of unknown function DUF4383 RAM_30470 24ac85f448428c963ce274d7d016ddb0 330 Pfam PF02424 ApbE family 9 304 9.5E-54 T 13-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 RAM_30470 24ac85f448428c963ce274d7d016ddb0 330 Gene3D G3DSA:3.10.520.20 2 329 4.1E-62 T 13-10-2018 RAM_30470 24ac85f448428c963ce274d7d016ddb0 330 SUPERFAMILY SSF143631 2 324 3.66E-58 T 13-10-2018 IPR003374 ApbE-like superfamily RAM_38075 2d42858c1b07f3b2014e183de70a288a 254 Pfam PF14417 MEDS: MEthanogen/methylotroph, DcmR Sensory domain 3 129 1.1E-23 T 13-10-2018 IPR025847 MEDS domain RAM_02110 65cadad40749b3a4ab5aaf09066226cf 185 SUPERFAMILY SSF53597 4 159 1.7E-20 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RAM_02110 65cadad40749b3a4ab5aaf09066226cf 185 Gene3D G3DSA:3.40.430.10 1 181 2.3E-35 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RAM_02110 65cadad40749b3a4ab5aaf09066226cf 185 Pfam PF01872 RibD C-terminal domain 3 173 1.8E-17 T 13-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 RAM_25360 eb50c9580ac3491de66b349e5e6ca404 724 SUPERFAMILY SSF53448 484 702 5.01E-31 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_25360 eb50c9580ac3491de66b349e5e6ca404 724 Pfam PF00535 Glycosyl transferase family 2 487 644 6.1E-18 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RAM_25360 eb50c9580ac3491de66b349e5e6ca404 724 Gene3D G3DSA:3.90.550.10 476 715 6.3E-40 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_31300 b95da01e8919453e3d3ea86b8a4d1dfe 110 Pfam PF03795 YCII-related domain 25 98 8.0E-5 T 13-10-2018 IPR005545 YCII-related RAM_31300 b95da01e8919453e3d3ea86b8a4d1dfe 110 SUPERFAMILY SSF54909 30 100 5.36E-6 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_37320 a9cb6585ca0c84e122ac452b21b37a0c 895 SUPERFAMILY SSF55545 18 97 3.49E-5 T 13-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 RAM_17725 beb1f51dc49a8c364659717688b0b9b4 107 Pfam PF00893 Small Multidrug Resistance protein 2 93 1.6E-19 T 13-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 RAM_17725 beb1f51dc49a8c364659717688b0b9b4 107 SUPERFAMILY SSF103481 5 103 1.12E-14 T 13-10-2018 RAM_17725 beb1f51dc49a8c364659717688b0b9b4 107 Gene3D G3DSA:1.10.3730.20 1 107 1.0E-26 T 13-10-2018 RAM_39750 e19175cf32ad62b196eb2ee237879786 68 TIGRFAM TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family 1 48 6.0E-16 T 13-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain RAM_39750 e19175cf32ad62b196eb2ee237879786 68 Pfam PF09723 Zinc ribbon domain 1 40 1.9E-13 T 13-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain RAM_39750 e19175cf32ad62b196eb2ee237879786 68 SMART SM00834 1 42 1.6E-14 T 13-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain RAM_19190 3286d5d384a4bf61124a0f8366dc8aae 400 Pfam PF01757 Acyltransferase family 21 343 1.5E-27 T 13-10-2018 IPR002656 Acyltransferase 3 GO:0016747 RAM_44300 ad034d371cce5c938479c4e3387661d9 244 Pfam PF06386 Gas vesicle synthesis protein GvpL/GvpF 10 234 2.5E-45 T 13-10-2018 IPR009430 Gas vesicle protein GvpL/GvpF GO:0031411|GO:0031412 RAM_21205 cef3b7e04d7f362bd142187208a2bafe 343 Gene3D G3DSA:1.10.10.10 3 82 1.0E-6 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_21205 cef3b7e04d7f362bd142187208a2bafe 343 Pfam PF13847 Methyltransferase domain 166 274 9.8E-20 T 13-10-2018 IPR025714 Methyltransferase domain RAM_21205 cef3b7e04d7f362bd142187208a2bafe 343 Gene3D G3DSA:3.40.50.150 141 340 5.9E-34 T 13-10-2018 RAM_21205 cef3b7e04d7f362bd142187208a2bafe 343 SUPERFAMILY SSF53335 156 343 5.98E-34 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_21205 cef3b7e04d7f362bd142187208a2bafe 343 SUPERFAMILY SSF46785 11 87 1.05E-6 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_20160 261673d167f657c9e67a589fe62bea6c 118 Pfam PF05336 L-rhamnose mutarotase 4 107 4.4E-36 T 13-10-2018 IPR008000 Rhamnose/fucose mutarotase GO:0005737|GO:0016857 RAM_20160 261673d167f657c9e67a589fe62bea6c 118 Gene3D G3DSA:3.30.70.100 2 95 1.3E-26 T 13-10-2018 RAM_20160 261673d167f657c9e67a589fe62bea6c 118 SUPERFAMILY SSF54909 2 107 9.65E-32 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_38135 94e57dd7323f665f8ac6002cf25dc758 428 Gene3D G3DSA:3.40.190.10 147 420 6.3E-108 T 13-10-2018 RAM_38135 94e57dd7323f665f8ac6002cf25dc758 428 SUPERFAMILY SSF53850 24 426 5.18E-54 T 13-10-2018 RAM_38135 94e57dd7323f665f8ac6002cf25dc758 428 Gene3D G3DSA:3.40.190.10 38 373 6.3E-108 T 13-10-2018 RAM_38135 94e57dd7323f665f8ac6002cf25dc758 428 Pfam PF01547 Bacterial extracellular solute-binding protein 51 334 1.1E-28 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein RAM_07160 203c30cecc43ce643a2b7e28f8f2484f 530 SUPERFAMILY SSF103473 123 511 2.09E-47 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_07160 203c30cecc43ce643a2b7e28f8f2484f 530 Gene3D G3DSA:1.20.1250.20 121 307 7.7E-16 T 13-10-2018 RAM_07160 203c30cecc43ce643a2b7e28f8f2484f 530 Pfam PF05977 Transmembrane secretion effector 123 507 7.4E-33 T 13-10-2018 IPR010290 Transmembrane secretion effector RAM_07160 203c30cecc43ce643a2b7e28f8f2484f 530 Gene3D G3DSA:1.20.1250.20 327 513 1.2E-17 T 13-10-2018 RAM_26210 22b01f713e68081a13a39843075b8dea 114 SUPERFAMILY SSF52091 12 101 1.92E-9 T 13-10-2018 IPR036513 STAS domain superfamily RAM_26210 22b01f713e68081a13a39843075b8dea 114 Gene3D G3DSA:3.30.750.24 7 111 3.2E-11 T 13-10-2018 IPR036513 STAS domain superfamily RAM_02565 e5c20f07bdae9ad1a474e6cd62d85b4e 445 SUPERFAMILY SSF52540 194 431 2.41E-28 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_02565 e5c20f07bdae9ad1a474e6cd62d85b4e 445 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 196 403 1.1E-9 T 13-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain RAM_02565 e5c20f07bdae9ad1a474e6cd62d85b4e 445 Gene3D G3DSA:3.40.50.300 195 432 1.8E-34 T 13-10-2018 RAM_47925 ffaa20c198829413f1aa530be375451e 148 Pfam PF00293 NUDIX domain 5 120 6.0E-24 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RAM_47925 ffaa20c198829413f1aa530be375451e 148 Gene3D G3DSA:3.90.79.10 1 132 1.1E-34 T 13-10-2018 RAM_47925 ffaa20c198829413f1aa530be375451e 148 ProSitePatterns PS00893 Nudix box signature. 28 49 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RAM_47925 ffaa20c198829413f1aa530be375451e 148 PRINTS PR00502 NUDIX hydrolase family signature 23 37 8.3E-9 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RAM_47925 ffaa20c198829413f1aa530be375451e 148 PRINTS PR00502 NUDIX hydrolase family signature 37 52 8.3E-9 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RAM_47925 ffaa20c198829413f1aa530be375451e 148 SUPERFAMILY SSF55811 8 127 1.49E-32 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RAM_15130 df997e1d6a60b2cfda8629c8b96bf613 191 Gene3D G3DSA:2.40.260.10 46 191 1.8E-15 T 13-10-2018 IPR023365 Sortase domain superfamily RAM_15130 df997e1d6a60b2cfda8629c8b96bf613 191 SUPERFAMILY SSF63817 77 188 5.49E-8 T 13-10-2018 IPR023365 Sortase domain superfamily RAM_15130 df997e1d6a60b2cfda8629c8b96bf613 191 Pfam PF04203 Sortase family 55 189 9.0E-9 T 13-10-2018 IPR005754 Sortase family RAM_19630 58eadd4b48a590a6f9cd4a277cb4a4e9 173 Pfam PF07681 DoxX 11 95 6.8E-17 T 13-10-2018 IPR032808 DoxX family RAM_45050 fa39b0d48333788abf21b48cc3bfa838 723 Pfam PF01580 FtsK/SpoIIIE family 362 521 1.9E-5 T 13-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 RAM_45050 fa39b0d48333788abf21b48cc3bfa838 723 SUPERFAMILY SSF52540 341 589 3.36E-11 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_45050 fa39b0d48333788abf21b48cc3bfa838 723 Gene3D G3DSA:3.40.50.300 340 603 1.1E-39 T 13-10-2018 RAM_12400 418fa295692c9ca82033cc517f28088b 325 SUPERFAMILY SSF47240 117 236 1.53E-8 T 13-10-2018 IPR009078 Ferritin-like superfamily RAM_12400 418fa295692c9ca82033cc517f28088b 325 Pfam PF13668 Ferritin-like domain 71 239 2.7E-45 T 13-10-2018 RAM_40745 2609e59d2465b896e8662d910c9dcc94 203 Pfam PF10067 Predicted membrane protein (DUF2306) 44 195 1.2E-31 T 13-10-2018 IPR018750 Protein of unknown function DUF2306, membrane RAM_32235 7ac9d0ff24556b7ed87304ffc27b396d 169 Gene3D G3DSA:3.40.630.30 9 148 1.2E-28 T 13-10-2018 RAM_32235 7ac9d0ff24556b7ed87304ffc27b396d 169 Pfam PF00583 Acetyltransferase (GNAT) family 43 112 1.8E-13 T 13-10-2018 IPR000182 GNAT domain RAM_32235 7ac9d0ff24556b7ed87304ffc27b396d 169 SUPERFAMILY SSF55729 7 137 4.12E-23 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_43945 5e8c25a45ff19aea116a07cf67c3332c 94 Pfam PF04226 Transglycosylase associated protein 36 84 1.8E-9 T 13-10-2018 IPR007341 Transglycosylase-associated protein GO:0016021 RAM_11595 57b756e2219e34814055f27b4723aaaf 186 SUPERFAMILY SSF159275 7 179 3.53E-39 T 13-10-2018 RAM_11595 57b756e2219e34814055f27b4723aaaf 186 Pfam PF06475 Putative glycolipid-binding 8 179 3.9E-46 T 13-10-2018 IPR009467 Putative glycolipid-binding protein RAM_03285 edfe36963234429a9d0318a4a1bfe585 294 TIGRFAM TIGR03621 F420_MSMEG_2516: probable F420-dependent oxidoreductase, MSMEG_2516 family 8 291 2.9E-101 T 13-10-2018 IPR019923 Luciferase-like, F420-dependent oxidoreductase, MSMEG2516, predicted RAM_03285 edfe36963234429a9d0318a4a1bfe585 294 SUPERFAMILY SSF51679 7 291 2.49E-48 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_03285 edfe36963234429a9d0318a4a1bfe585 294 Gene3D G3DSA:3.20.20.30 13 291 5.8E-47 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_03285 edfe36963234429a9d0318a4a1bfe585 294 Pfam PF00296 Luciferase-like monooxygenase 8 266 1.5E-28 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_05495 93e1fe6b18277cb4013925ef1b2ca960 323 SUPERFAMILY SSF161098 37 311 4.45E-48 T 13-10-2018 IPR035906 MetI-like superfamily RAM_05495 93e1fe6b18277cb4013925ef1b2ca960 323 Gene3D G3DSA:1.10.3720.10 32 308 3.6E-55 T 13-10-2018 IPR035906 MetI-like superfamily RAM_05495 93e1fe6b18277cb4013925ef1b2ca960 323 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 116 310 4.8E-12 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_02295 51825e9998acd3e3ba1f1d518231e60b 169 SUPERFAMILY SSF109854 2 80 4.35E-6 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_02295 51825e9998acd3e3ba1f1d518231e60b 169 Pfam PF07398 MDMPI C-terminal domain 99 167 1.5E-8 T 13-10-2018 IPR010872 MDMPI C-terminal RAM_02295 51825e9998acd3e3ba1f1d518231e60b 169 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 16 153 9.3E-16 T 13-10-2018 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type RAM_02295 51825e9998acd3e3ba1f1d518231e60b 169 Pfam PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain 16 83 2.0E-7 T 13-10-2018 IPR024344 Mycothiol-dependent maleylpyruvate isomerase, metal-binding domain GO:0046872 RAM_28025 8fa449a9b9b5ee87c20af491e0ffbcf4 199 ProSitePatterns PS01081 TetR-type HTH domain signature. 34 65 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RAM_28025 8fa449a9b9b5ee87c20af491e0ffbcf4 199 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 66 8.8E-17 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_28025 8fa449a9b9b5ee87c20af491e0ffbcf4 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 43 66 2.1E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_28025 8fa449a9b9b5ee87c20af491e0ffbcf4 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 22 35 2.1E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_28025 8fa449a9b9b5ee87c20af491e0ffbcf4 199 Gene3D G3DSA:1.10.357.10 12 198 3.4E-35 T 13-10-2018 RAM_28025 8fa449a9b9b5ee87c20af491e0ffbcf4 199 SUPERFAMILY SSF46689 12 78 1.89E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_27825 af9ac7d95d831a4454687512b361fb09 136 SUPERFAMILY SSF46785 11 93 2.69E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_27825 af9ac7d95d831a4454687512b361fb09 136 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 69 84 2.7E-9 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_27825 af9ac7d95d831a4454687512b361fb09 136 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 54 69 2.7E-9 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_27825 af9ac7d95d831a4454687512b361fb09 136 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 19 34 2.7E-9 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_27825 af9ac7d95d831a4454687512b361fb09 136 Pfam PF12840 Helix-turn-helix domain 16 77 3.2E-10 T 13-10-2018 RAM_27825 af9ac7d95d831a4454687512b361fb09 136 Gene3D G3DSA:1.10.10.10 3 104 2.8E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_27825 af9ac7d95d831a4454687512b361fb09 136 SMART SM00418 17 98 4.6E-12 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RAM_47860 873a51b4b08ae065dc803a9defd45bf9 421 Gene3D G3DSA:1.20.1250.20 40 413 2.0E-20 T 13-10-2018 RAM_47860 873a51b4b08ae065dc803a9defd45bf9 421 Pfam PF07690 Major Facilitator Superfamily 48 378 4.6E-11 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_47860 873a51b4b08ae065dc803a9defd45bf9 421 SUPERFAMILY SSF103473 45 418 1.57E-20 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_00870 137753569311af00cb1edf84e148a15b 461 Gene3D G3DSA:3.30.420.10 16 179 6.5E-24 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RAM_00870 137753569311af00cb1edf84e148a15b 461 Pfam PF00929 Exonuclease 22 106 3.0E-7 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III RAM_00870 137753569311af00cb1edf84e148a15b 461 SUPERFAMILY SSF158682 232 307 4.05E-5 T 13-10-2018 IPR029024 TerB-like RAM_00870 137753569311af00cb1edf84e148a15b 461 SUPERFAMILY SSF53098 17 181 4.86E-23 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily RAM_00870 137753569311af00cb1edf84e148a15b 461 SMART SM00479 19 183 1.1E-5 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III RAM_42470 5d439345602f828c8bb10dcb3249c46f 338 Pfam PF04542 Sigma-70 region 2 10 79 2.1E-11 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_42470 5d439345602f828c8bb10dcb3249c46f 338 Pfam PF08281 Sigma-70, region 4 108 159 5.5E-9 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_42470 5d439345602f828c8bb10dcb3249c46f 338 Gene3D G3DSA:1.10.1740.10 5 78 5.0E-8 T 13-10-2018 RAM_42470 5d439345602f828c8bb10dcb3249c46f 338 Gene3D G3DSA:3.10.450.50 169 281 1.7E-5 T 13-10-2018 RAM_42470 5d439345602f828c8bb10dcb3249c46f 338 Gene3D G3DSA:1.10.10.10 90 163 2.4E-11 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_42470 5d439345602f828c8bb10dcb3249c46f 338 SUPERFAMILY SSF88659 103 161 1.72E-10 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_42470 5d439345602f828c8bb10dcb3249c46f 338 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 12 161 4.3E-14 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_42470 5d439345602f828c8bb10dcb3249c46f 338 SUPERFAMILY SSF88946 8 93 4.71E-13 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_42470 5d439345602f828c8bb10dcb3249c46f 338 SUPERFAMILY SSF54427 173 283 6.12E-13 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_12010 176a7a6957df1e6cfcc2a11b4dd9fdfd 215 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 30 211 3.9E-16 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_12010 176a7a6957df1e6cfcc2a11b4dd9fdfd 215 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 15 106 2.9E-19 T 13-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 RAM_12010 176a7a6957df1e6cfcc2a11b4dd9fdfd 215 Gene3D G3DSA:1.10.3720.10 1 213 6.7E-38 T 13-10-2018 IPR035906 MetI-like superfamily RAM_12010 176a7a6957df1e6cfcc2a11b4dd9fdfd 215 SUPERFAMILY SSF161098 11 197 8.76E-34 T 13-10-2018 IPR035906 MetI-like superfamily RAM_01560 1ad9665958632cde57e5c8726f4ad29b 655 Pfam PF13515 Fusaric acid resistance protein-like 353 474 9.4E-21 T 13-10-2018 RAM_07340 6b14a07ed62b7750bbb1d3ea3fad42af 141 Pfam PF15585 Immunity protein 7 14 137 8.5E-44 T 13-10-2018 IPR028965 Immunity protein 7 RAM_47745 4e9b9cdc90a290adca736772035abc4c 378 SUPERFAMILY SSF55874 271 372 2.1E-12 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_47745 4e9b9cdc90a290adca736772035abc4c 378 Gene3D G3DSA:3.30.565.10 245 373 1.5E-19 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_47745 4e9b9cdc90a290adca736772035abc4c 378 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 280 373 2.7E-6 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_30670 32348ee352f50a29f89de3533c93a604 243 Pfam PF01522 Polysaccharide deacetylase 49 155 7.5E-26 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 RAM_30670 32348ee352f50a29f89de3533c93a604 243 Gene3D G3DSA:3.20.20.370 8 243 6.4E-57 T 13-10-2018 RAM_30670 32348ee352f50a29f89de3533c93a604 243 SUPERFAMILY SSF88713 43 240 2.72E-54 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RAM_26795 2b4bdaf6a52aff95e2233be80626a5bb 219 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 42 65 1.0E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_26795 2b4bdaf6a52aff95e2233be80626a5bb 219 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 22 35 1.0E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_26795 2b4bdaf6a52aff95e2233be80626a5bb 219 Gene3D G3DSA:1.10.357.10 7 205 1.0E-32 T 13-10-2018 RAM_26795 2b4bdaf6a52aff95e2233be80626a5bb 219 SUPERFAMILY SSF46689 10 91 4.79E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_26795 2b4bdaf6a52aff95e2233be80626a5bb 219 SUPERFAMILY SSF48498 88 197 1.6E-14 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_26795 2b4bdaf6a52aff95e2233be80626a5bb 219 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 67 3.7E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_46895 999b42674a743c30489a89e6f8e0472e 328 SUPERFAMILY SSF51445 35 307 4.01E-27 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_46895 999b42674a743c30489a89e6f8e0472e 328 Pfam PF00150 Cellulase (glycosyl hydrolase family 5) 80 292 1.8E-9 T 13-10-2018 IPR001547 Glycoside hydrolase, family 5 GO:0004553|GO:0005975 RAM_46895 999b42674a743c30489a89e6f8e0472e 328 Gene3D G3DSA:3.20.20.80 34 322 1.8E-30 T 13-10-2018 RAM_04510 ba86d2962af82b5c579cba6d0cd316fc 140 Pfam PF00102 Protein-tyrosine phosphatase 46 110 8.6E-6 T 13-10-2018 IPR000242 PTP type protein phosphatase GO:0004725|GO:0006470 RAM_04510 ba86d2962af82b5c579cba6d0cd316fc 140 Gene3D G3DSA:3.90.190.10 31 140 3.2E-16 T 13-10-2018 IPR029021 Protein-tyrosine phosphatase-like RAM_04510 ba86d2962af82b5c579cba6d0cd316fc 140 SUPERFAMILY SSF52799 47 138 1.09E-16 T 13-10-2018 IPR029021 Protein-tyrosine phosphatase-like RAM_34870 d550c667d089c90a7157315320b88aa8 206 Gene3D G3DSA:3.40.50.720 1 191 4.1E-50 T 13-10-2018 RAM_34870 d550c667d089c90a7157315320b88aa8 206 SUPERFAMILY SSF51735 3 189 8.43E-37 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_34870 d550c667d089c90a7157315320b88aa8 206 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 3 92 7.8E-14 T 13-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal RAM_42940 f4057999d12b27b9c18bfeea41d93dc3 219 Gene3D G3DSA:1.10.630.10 152 218 1.8E-6 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_42940 f4057999d12b27b9c18bfeea41d93dc3 219 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 166 175 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RAM_42940 f4057999d12b27b9c18bfeea41d93dc3 219 SUPERFAMILY SSF48264 4 217 7.07E-10 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_42940 f4057999d12b27b9c18bfeea41d93dc3 219 Gene3D G3DSA:1.10.630.10 2 151 6.7E-7 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_32430 414e6bdecbf9e09dbf3dfde52b668cfd 154 Pfam PF13673 Acetyltransferase (GNAT) domain 37 143 2.4E-11 T 13-10-2018 IPR000182 GNAT domain RAM_32430 414e6bdecbf9e09dbf3dfde52b668cfd 154 Gene3D G3DSA:3.40.630.30 4 152 1.1E-24 T 13-10-2018 RAM_32430 414e6bdecbf9e09dbf3dfde52b668cfd 154 SUPERFAMILY SSF55729 3 146 4.46E-22 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_25675 b53bffb975cfb8375bbff5cc6a136ea6 413 Gene3D G3DSA:3.40.190.10 127 402 2.3E-61 T 13-10-2018 RAM_25675 b53bffb975cfb8375bbff5cc6a136ea6 413 Pfam PF13416 Bacterial extracellular solute-binding protein 40 343 8.6E-27 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein RAM_25675 b53bffb975cfb8375bbff5cc6a136ea6 413 Gene3D G3DSA:3.40.190.10 36 362 2.3E-61 T 13-10-2018 RAM_25675 b53bffb975cfb8375bbff5cc6a136ea6 413 SUPERFAMILY SSF53850 7 413 7.44E-58 T 13-10-2018 RAM_02185 1d207c9d90b415c3778a5e2060529da1 393 SUPERFAMILY SSF53335 2 214 3.84E-28 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_02185 1d207c9d90b415c3778a5e2060529da1 393 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 96 215 1.5E-22 T 13-10-2018 RAM_13865 cf1a11df87f16d555ce600399b455c06 85 Gene3D G3DSA:3.30.1360.60 7 85 1.2E-26 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 RAM_13865 cf1a11df87f16d555ce600399b455c06 85 Pfam PF00367 phosphotransferase system, EIIB 14 46 6.7E-13 T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 RAM_13865 cf1a11df87f16d555ce600399b455c06 85 SUPERFAMILY SSF55604 13 84 2.62E-20 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 RAM_13865 cf1a11df87f16d555ce600399b455c06 85 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 7 71 2.2E-17 T 13-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 RAM_12345 9a2697174b02c49476052b52426dadfa 282 Pfam PF02405 Permease MlaE 66 269 9.3E-59 T 13-10-2018 IPR030802 ABC transporter permease MalE GO:0043190 RAM_12015 147a80ccc328d2c2a853241db636edd0 308 Gene3D G3DSA:3.40.190.10 64 289 3.4E-61 T 13-10-2018 RAM_12015 147a80ccc328d2c2a853241db636edd0 308 Gene3D G3DSA:3.40.190.10 161 254 3.4E-61 T 13-10-2018 RAM_12015 147a80ccc328d2c2a853241db636edd0 308 SMART SM00062 70 296 3.6E-59 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RAM_12015 147a80ccc328d2c2a853241db636edd0 308 SUPERFAMILY SSF53850 18 290 4.48E-53 T 13-10-2018 RAM_12015 147a80ccc328d2c2a853241db636edd0 308 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 71 290 6.2E-48 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RAM_22365 d9e56eeca1e8a554b0abfbeea4b6bc9a 264 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_22365 d9e56eeca1e8a554b0abfbeea4b6bc9a 264 SUPERFAMILY SSF51735 1 259 2.41E-66 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_22365 d9e56eeca1e8a554b0abfbeea4b6bc9a 264 Gene3D G3DSA:3.40.50.720 1 263 2.9E-71 T 13-10-2018 RAM_22365 d9e56eeca1e8a554b0abfbeea4b6bc9a 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 4.5E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_22365 d9e56eeca1e8a554b0abfbeea4b6bc9a 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 4.5E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_22365 d9e56eeca1e8a554b0abfbeea4b6bc9a 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 4.5E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_22365 d9e56eeca1e8a554b0abfbeea4b6bc9a 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 4.5E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_22365 d9e56eeca1e8a554b0abfbeea4b6bc9a 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 4.5E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_22365 d9e56eeca1e8a554b0abfbeea4b6bc9a 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 222 242 4.5E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_22365 d9e56eeca1e8a554b0abfbeea4b6bc9a 264 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 258 1.0E-45 T 13-10-2018 RAM_04030 367ac6862191db63f76968b5db2ab2a9 301 Pfam PF00892 EamA-like transporter family 12 139 1.3E-15 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RAM_04030 367ac6862191db63f76968b5db2ab2a9 301 Pfam PF00892 EamA-like transporter family 150 285 1.3E-18 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RAM_04030 367ac6862191db63f76968b5db2ab2a9 301 SUPERFAMILY SSF103481 40 142 5.36E-10 T 13-10-2018 RAM_04030 367ac6862191db63f76968b5db2ab2a9 301 SUPERFAMILY SSF103481 191 290 4.05E-14 T 13-10-2018 RAM_42840 2f37d22043406bd04903eb88e618c715 1078 Gene3D G3DSA:2.70.98.10 38 357 8.1E-249 T 13-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 RAM_42840 2f37d22043406bd04903eb88e618c715 1078 TIGRFAM TIGR01180 aman2_put: putative alpha-1,2-mannosidase 15 767 2.9E-166 T 13-10-2018 IPR005887 Alpha-1,2-mannosidase, putative RAM_42840 2f37d22043406bd04903eb88e618c715 1078 Gene3D G3DSA:3.30.2080.10 305 767 8.1E-249 T 13-10-2018 RAM_42840 2f37d22043406bd04903eb88e618c715 1078 SUPERFAMILY SSF48208 270 745 5.95E-20 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_42840 2f37d22043406bd04903eb88e618c715 1078 Gene3D G3DSA:1.20.1610.10 455 635 8.1E-249 T 13-10-2018 RAM_42840 2f37d22043406bd04903eb88e618c715 1078 Pfam PF07971 Glycosyl hydrolase family 92 247 763 3.5E-152 T 13-10-2018 IPR012939 Glycosyl hydrolase family 92 RAM_42840 2f37d22043406bd04903eb88e618c715 1078 Gene3D G3DSA:1.20.1050.60 358 454 8.1E-249 T 13-10-2018 RAM_09440 3cf3c9bb9da7a84a64d5c7eef33d090b 245 TIGRFAM TIGR02422 protocat_beta: protocatechuate 3,4-dioxygenase, beta subunit 20 239 3.3E-108 T 13-10-2018 IPR012785 Protocatechuate 3,4-dioxygenase, beta subunit GO:0005506|GO:0018578|GO:0019619|GO:0055114 KEGG: 00362+1.13.11.3|KEGG: 00624+1.13.11.3|MetaCyc: PWY-6041 RAM_09440 3cf3c9bb9da7a84a64d5c7eef33d090b 245 Gene3D G3DSA:2.60.130.10 10 242 1.3E-85 T 13-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 RAM_09440 3cf3c9bb9da7a84a64d5c7eef33d090b 245 Pfam PF00775 Dioxygenase 50 231 1.6E-53 T 13-10-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 RAM_09440 3cf3c9bb9da7a84a64d5c7eef33d090b 245 Pfam PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal 15 45 2.4E-13 T 13-10-2018 IPR024756 Protocatechuate 3,4-dioxygenase beta subunit, N-terminal KEGG: 00362+1.13.11.3|KEGG: 00624+1.13.11.3|MetaCyc: PWY-6041 RAM_09440 3cf3c9bb9da7a84a64d5c7eef33d090b 245 ProSitePatterns PS00083 Intradiol ring-cleavage dioxygenases signature. 82 110 - T 13-10-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 RAM_09440 3cf3c9bb9da7a84a64d5c7eef33d090b 245 SUPERFAMILY SSF49482 16 239 1.96E-73 T 13-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 RAM_08855 337900db18b8e13ae44d5b003bdee20b 77 Gene3D G3DSA:3.30.70.920 1 72 1.9E-19 T 13-10-2018 RAM_08855 337900db18b8e13ae44d5b003bdee20b 77 Pfam PF01037 Lrp/AsnC ligand binding domain 6 74 2.1E-12 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RAM_08855 337900db18b8e13ae44d5b003bdee20b 77 SUPERFAMILY SSF54909 2 75 3.22E-14 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_16820 1156828946e8004a192aa8bba3ee27fe 158 SMART SM00347 29 129 3.9E-9 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_16820 1156828946e8004a192aa8bba3ee27fe 158 Gene3D G3DSA:1.10.10.10 2 142 4.3E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_16820 1156828946e8004a192aa8bba3ee27fe 158 Pfam PF12802 MarR family 36 92 5.7E-13 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_16820 1156828946e8004a192aa8bba3ee27fe 158 SUPERFAMILY SSF46785 16 144 3.31E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_02175 c3c6d86a1df32554a8708ae06aa9cd1e 105 Pfam PF13453 Transcription factor zinc-finger 1 31 7.2E-12 T 13-10-2018 IPR027392 Transcription factor zinc-finger RAM_07580 301f4de092d24ac924c434de5e0962e6 120 Pfam PF01638 HxlR-like helix-turn-helix 23 110 8.0E-28 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type RAM_07580 301f4de092d24ac924c434de5e0962e6 120 SUPERFAMILY SSF46785 17 116 7.44E-29 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_07580 301f4de092d24ac924c434de5e0962e6 120 Gene3D G3DSA:1.10.10.10 2 120 3.0E-35 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_15865 307015cf3a54f91f9b46bdda824d6690 154 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 11 127 1.0E-16 T 13-10-2018 IPR005031 Coenzyme Q-binding protein COQ10, START domain Reactome: R-HSA-611105 RAM_15865 307015cf3a54f91f9b46bdda824d6690 154 Gene3D G3DSA:3.30.530.20 2 138 2.0E-35 T 13-10-2018 IPR023393 START-like domain superfamily RAM_15865 307015cf3a54f91f9b46bdda824d6690 154 SUPERFAMILY SSF55961 1 139 2.5E-25 T 13-10-2018 RAM_21045 d2930c52b316340fb88c59156ae28602 342 Gene3D G3DSA:3.40.50.180 5 194 1.3E-59 T 13-10-2018 IPR035909 Methylesterase CheB, C-terminal RAM_21045 d2930c52b316340fb88c59156ae28602 342 SUPERFAMILY SSF52738 8 191 5.62E-53 T 13-10-2018 IPR035909 Methylesterase CheB, C-terminal RAM_21045 d2930c52b316340fb88c59156ae28602 342 Pfam PF01339 CheB methylesterase 12 185 8.4E-51 T 13-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RAM_21045 d2930c52b316340fb88c59156ae28602 342 PIRSF PIRSF036461 2 340 5.5E-78 T 13-10-2018 IPR011247 Chemotaxis protein-glutamate methylesterase RAM_42215 0f86c8afd62ba7ac5dc979e90856c82b 305 SUPERFAMILY SSF51679 11 300 2.75E-51 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_42215 0f86c8afd62ba7ac5dc979e90856c82b 305 Pfam PF00296 Luciferase-like monooxygenase 4 241 1.7E-47 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_42215 0f86c8afd62ba7ac5dc979e90856c82b 305 Gene3D G3DSA:3.20.20.30 14 304 3.1E-58 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_02135 a7071e57d97b6070cd28bd3104182a55 175 SUPERFAMILY SSF81923 3 66 8.44E-8 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 RAM_02135 a7071e57d97b6070cd28bd3104182a55 175 Gene3D G3DSA:1.10.1780.10 1 70 2.9E-14 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 RAM_02135 a7071e57d97b6070cd28bd3104182a55 175 SUPERFAMILY SSF81923 73 172 1.44E-12 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 RAM_02135 a7071e57d97b6070cd28bd3104182a55 175 Gene3D G3DSA:1.10.1780.10 71 175 1.2E-25 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 RAM_02135 a7071e57d97b6070cd28bd3104182a55 175 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 125 171 1.3E-8 T 13-10-2018 IPR004176 Clp, N-terminal RAM_02135 a7071e57d97b6070cd28bd3104182a55 175 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 16 61 5.3E-6 T 13-10-2018 IPR004176 Clp, N-terminal RAM_27645 9ce29eaad3d3e5b54f1722650e705264 785 Pfam PF00391 PEP-utilising enzyme, mobile domain 706 777 5.7E-22 T 13-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RAM_27645 9ce29eaad3d3e5b54f1722650e705264 785 Gene3D G3DSA:3.30.470.20 145 195 2.7E-11 T 13-10-2018 RAM_27645 9ce29eaad3d3e5b54f1722650e705264 785 Gene3D G3DSA:3.30.470.20 196 251 6.5E-12 T 13-10-2018 RAM_27645 9ce29eaad3d3e5b54f1722650e705264 785 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 55 189 6.6E-32 T 13-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 RAM_27645 9ce29eaad3d3e5b54f1722650e705264 785 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 201 250 1.8E-7 T 13-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 RAM_27645 9ce29eaad3d3e5b54f1722650e705264 785 SUPERFAMILY SSF56059 19 262 1.88E-58 T 13-10-2018 RAM_27645 9ce29eaad3d3e5b54f1722650e705264 785 SUPERFAMILY SSF52009 673 780 2.09E-28 T 13-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 RAM_27645 9ce29eaad3d3e5b54f1722650e705264 785 Gene3D G3DSA:3.50.30.10 677 782 2.1E-30 T 13-10-2018 RAM_27645 9ce29eaad3d3e5b54f1722650e705264 785 Gene3D G3DSA:3.30.1490.20 54 142 5.0E-20 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 RAM_27645 9ce29eaad3d3e5b54f1722650e705264 785 Gene3D G3DSA:3.30.1490.20 4 53 2.0E-5 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 RAM_12660 a9f65864bac189acb7aa4308fb7b7d05 140 Pfam PF04341 Protein of unknown function, DUF485 43 129 1.3E-31 T 13-10-2018 IPR007436 Protein of unknown function DUF485 RAM_12660 a9f65864bac189acb7aa4308fb7b7d05 140 SUPERFAMILY SSF103473 44 120 7.19E-5 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_21310 b2ef2435ab4ac8e2c9ef872983025767 264 Pfam PF13649 Methyltransferase domain 47 138 3.6E-17 T 13-10-2018 RAM_21310 b2ef2435ab4ac8e2c9ef872983025767 264 Gene3D G3DSA:3.40.50.150 12 179 2.1E-31 T 13-10-2018 RAM_21310 b2ef2435ab4ac8e2c9ef872983025767 264 SUPERFAMILY SSF53335 12 168 4.11E-30 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_39525 ae992960e512ada133f63edc43a4e365 73 Pfam PF12277 Protein of unknown function (DUF3618) 2 47 3.5E-18 T 13-10-2018 IPR022062 Protein of unknown function DUF3618 RAM_30875 09d24f5633162c6ad605ee52cef3da42 316 Pfam PF11382 Copper transport outer membrane protein, MctB 2 308 1.1E-97 T 13-10-2018 IPR021522 Copper transporter MctB GO:0016020|GO:0055070 RAM_13060 e56c6832dd379d760da6b1020e83417a 494 SUPERFAMILY SSF53335 147 288 1.81E-22 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_13060 e56c6832dd379d760da6b1020e83417a 494 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 221 227 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RAM_13060 e56c6832dd379d760da6b1020e83417a 494 Gene3D G3DSA:3.40.50.150 126 294 2.3E-26 T 13-10-2018 RAM_13060 e56c6832dd379d760da6b1020e83417a 494 Pfam PF05175 Methyltransferase small domain 141 232 3.7E-16 T 13-10-2018 IPR007848 Methyltransferase small domain GO:0008168 RAM_47090 bfe03c1ac554353f5d020e038dd6c132 130 SUPERFAMILY SSF54427 4 118 1.36E-27 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_47090 bfe03c1ac554353f5d020e038dd6c132 130 Gene3D G3DSA:3.10.450.50 2 130 1.3E-35 T 13-10-2018 RAM_47090 bfe03c1ac554353f5d020e038dd6c132 130 Pfam PF12680 SnoaL-like domain 11 114 2.8E-20 T 13-10-2018 IPR037401 SnoaL-like domain RAM_08305 ef00c2136b8ba7c2af90d69b0a6444f5 163 Gene3D G3DSA:1.10.10.10 77 157 4.3E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_08305 ef00c2136b8ba7c2af90d69b0a6444f5 163 SUPERFAMILY SSF88946 5 87 2.71E-11 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_08305 ef00c2136b8ba7c2af90d69b0a6444f5 163 Gene3D G3DSA:1.10.1740.10 2 76 3.2E-7 T 13-10-2018 RAM_08305 ef00c2136b8ba7c2af90d69b0a6444f5 163 TIGRFAM TIGR02983 SigE-fam_strep: RNA polymerase sigma-70 factor, sigma-E family 4 156 1.4E-46 T 13-10-2018 IPR014325 RNA polymerase sigma-E factor, actinobacteria GO:0016987 RAM_08305 ef00c2136b8ba7c2af90d69b0a6444f5 163 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 16 154 1.9E-21 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RAM_08305 ef00c2136b8ba7c2af90d69b0a6444f5 163 Pfam PF04542 Sigma-70 region 2 13 75 3.6E-7 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_08305 ef00c2136b8ba7c2af90d69b0a6444f5 163 SUPERFAMILY SSF88659 93 155 1.31E-15 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_08305 ef00c2136b8ba7c2af90d69b0a6444f5 163 Pfam PF08281 Sigma-70, region 4 99 148 5.8E-16 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_20520 fc82981418d11c9b1c417867d4e793c4 416 Gene3D G3DSA:3.30.565.10 294 412 5.5E-20 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_20520 fc82981418d11c9b1c417867d4e793c4 416 Pfam PF07730 Histidine kinase 224 291 4.0E-14 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_20520 fc82981418d11c9b1c417867d4e793c4 416 SUPERFAMILY SSF55874 301 411 1.44E-13 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_20520 fc82981418d11c9b1c417867d4e793c4 416 Pfam PF13796 Putative sensor 18 195 5.0E-19 T 13-10-2018 IPR025828 Putative sensor domain RAM_27815 7f5d0d3308dd4024a0a4d906065ad1f0 336 SUPERFAMILY SSF55469 7 323 9.17E-16 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RAM_27815 7f5d0d3308dd4024a0a4d906065ad1f0 336 Gene3D G3DSA:3.40.109.10 105 325 1.8E-50 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RAM_27815 7f5d0d3308dd4024a0a4d906065ad1f0 336 Gene3D G3DSA:3.40.109.10 4 104 3.0E-41 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RAM_29235 0d57b7e427c5c5a979bbafe1b8752bae 112 Pfam PF04075 F420H(2)-dependent quinone reductase 10 58 2.0E-5 T 13-10-2018 IPR004378 F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 RAM_29235 0d57b7e427c5c5a979bbafe1b8752bae 112 Gene3D G3DSA:2.30.110.10 1 74 4.6E-6 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_44600 2dbdcfa3b69f46717e6e12e567b1d964 217 SUPERFAMILY SSF109604 21 155 7.46E-20 T 13-10-2018 RAM_44600 2dbdcfa3b69f46717e6e12e567b1d964 217 Gene3D G3DSA:1.10.3210.10 9 163 1.7E-16 T 13-10-2018 RAM_26915 1cd8708e08bfd01ad14414de950ab00e 291 Gene3D G3DSA:2.40.100.10 116 291 5.2E-39 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily RAM_26915 1cd8708e08bfd01ad14414de950ab00e 291 SUPERFAMILY SSF50891 124 289 1.05E-33 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily RAM_26915 1cd8708e08bfd01ad14414de950ab00e 291 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 129 287 5.4E-28 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 RAM_40090 5a27e0d6b95d71433a81ea9dbaaf6693 247 Gene3D G3DSA:1.10.443.10 33 241 6.9E-22 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 RAM_40090 5a27e0d6b95d71433a81ea9dbaaf6693 247 SUPERFAMILY SSF56349 24 229 7.95E-20 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RAM_40090 5a27e0d6b95d71433a81ea9dbaaf6693 247 Pfam PF00589 Phage integrase family 38 226 2.8E-6 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RAM_32790 4a53da15df1dae706773afcf34f464f3 399 PIRSF PIRSF038800 2 398 9.1E-131 T 13-10-2018 IPR010111 Kynureninase GO:0005737|GO:0006569|GO:0009435|GO:0030170|GO:0030429 KEGG: 00380+3.7.1.3|MetaCyc: PWY-5651|MetaCyc: PWY-6309|Reactome: R-HSA-71240 RAM_32790 4a53da15df1dae706773afcf34f464f3 399 SUPERFAMILY SSF53383 12 397 2.24E-71 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_32790 4a53da15df1dae706773afcf34f464f3 399 Pfam PF00266 Aminotransferase class-V 117 364 2.3E-16 T 13-10-2018 IPR000192 Aminotransferase class V domain RAM_32790 4a53da15df1dae706773afcf34f464f3 399 Gene3D G3DSA:3.90.1150.10 13 396 2.1E-126 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_32790 4a53da15df1dae706773afcf34f464f3 399 Gene3D G3DSA:3.40.640.10 47 302 2.1E-126 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_46730 b27601e531367edf1dd2c8a4726ab3bb 302 PRINTS PR00069 Aldo-keto reductase signature 100 118 7.2E-5 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_46730 b27601e531367edf1dd2c8a4726ab3bb 302 PRINTS PR00069 Aldo-keto reductase signature 131 148 7.2E-5 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RAM_46730 b27601e531367edf1dd2c8a4726ab3bb 302 SUPERFAMILY SSF51430 2 302 2.62E-90 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_46730 b27601e531367edf1dd2c8a4726ab3bb 302 Gene3D G3DSA:3.20.20.100 1 302 1.4E-103 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_46730 b27601e531367edf1dd2c8a4726ab3bb 302 Pfam PF00248 Aldo/keto reductase family 16 301 3.2E-68 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain RAM_28040 eae5d7936872b207fd00940d03dde42a 153 SMART SM00347 26 129 3.6E-13 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_28040 eae5d7936872b207fd00940d03dde42a 153 Gene3D G3DSA:1.10.10.10 3 141 5.6E-32 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_28040 eae5d7936872b207fd00940d03dde42a 153 Pfam PF12802 MarR family 32 92 6.4E-13 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_28040 eae5d7936872b207fd00940d03dde42a 153 PRINTS PR00598 Bacterial regulatory protein MarR family signature 88 104 3.4E-9 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_28040 eae5d7936872b207fd00940d03dde42a 153 PRINTS PR00598 Bacterial regulatory protein MarR family signature 69 84 3.4E-9 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_28040 eae5d7936872b207fd00940d03dde42a 153 PRINTS PR00598 Bacterial regulatory protein MarR family signature 119 139 3.4E-9 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_28040 eae5d7936872b207fd00940d03dde42a 153 SUPERFAMILY SSF46785 8 139 3.85E-26 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_03830 cfa9f43e74dd368c8ce76903c85c9cf1 59 TIGRFAM TIGR01167 LPXTG_anchor: LPXTG cell wall anchor domain 18 51 1.5E-4 T 13-10-2018 RAM_20455 1c5015f9260692fea806cf0aff2d973d 298 Pfam PF01370 NAD dependent epimerase/dehydratase family 4 219 3.4E-28 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 RAM_20455 1c5015f9260692fea806cf0aff2d973d 298 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 120 148 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_20455 1c5015f9260692fea806cf0aff2d973d 298 SUPERFAMILY SSF51735 3 291 6.86E-47 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_20455 1c5015f9260692fea806cf0aff2d973d 298 Gene3D G3DSA:3.40.50.720 2 294 5.2E-50 T 13-10-2018 RAM_12525 04cc225edeb9dd8734a2ff762e933f10 478 SUPERFAMILY SSF48557 2 473 1.18E-117 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 RAM_12525 04cc225edeb9dd8734a2ff762e933f10 478 Pfam PF00221 Aromatic amino acid lyase 9 434 1.2E-114 T 13-10-2018 IPR001106 Aromatic amino acid lyase Reactome: R-HSA-70921 RAM_12525 04cc225edeb9dd8734a2ff762e933f10 478 Gene3D G3DSA:1.20.200.10 181 477 2.2E-78 T 13-10-2018 RAM_13395 6a9cfa1ed923dfa0d1e5e2f8656f8057 1159 Gene3D G3DSA:3.40.50.20 1 63 1.9E-20 T 13-10-2018 RAM_13395 6a9cfa1ed923dfa0d1e5e2f8656f8057 1159 SUPERFAMILY SSF52440 2 62 6.76E-19 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RAM_13395 6a9cfa1ed923dfa0d1e5e2f8656f8057 1159 Pfam PF00289 Biotin carboxylase, N-terminal domain 2 62 8.2E-18 T 13-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RAM_44575 448ba6d6781d8dd4864bc4b5d5b53472 477 PIRSF PIRSF016636 1 477 2.0E-145 T 13-10-2018 IPR024194 Alginate O-acetyltransferase AlgI/D-alanyl transfer protein DltB RAM_44575 448ba6d6781d8dd4864bc4b5d5b53472 477 PIRSF PIRSF500217 1 477 1.9E-147 T 13-10-2018 IPR028362 Alginate O-acetyltransferase AlgI GO:0042121 RAM_44575 448ba6d6781d8dd4864bc4b5d5b53472 477 Pfam PF03062 MBOAT, membrane-bound O-acyltransferase family 151 347 3.6E-31 T 13-10-2018 IPR004299 Membrane bound O-acyl transferase, MBOAT RAM_45985 8760792aa8d492c6db8adf8fa35327d6 649 Pfam PF05506 Domain of unknown function (DUF756) 490 570 1.6E-11 T 13-10-2018 IPR008475 Bacterial phospholipase C, C-terminal domain GO:0004629|GO:0016042 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3|MetaCyc: PWY-7782|MetaCyc: PWY-7783 RAM_45985 8760792aa8d492c6db8adf8fa35327d6 649 Pfam PF04185 Phosphoesterase family 38 422 1.1E-109 T 13-10-2018 IPR007312 Phosphoesterase GO:0016788 RAM_45985 8760792aa8d492c6db8adf8fa35327d6 649 TIGRFAM TIGR03396 PC_PLC: phospholipase C, phosphocholine-specific 6 649 1.1E-202 T 13-10-2018 IPR017767 Bacterial phospholipase C, phosphocholine-specific GO:0034480 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3|MetaCyc: PWY-7782|MetaCyc: PWY-7783 RAM_45985 8760792aa8d492c6db8adf8fa35327d6 649 Gene3D G3DSA:3.40.720.10 287 470 1.0E-50 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 RAM_45985 8760792aa8d492c6db8adf8fa35327d6 649 Gene3D G3DSA:3.40.720.10 29 178 4.6E-30 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 RAM_47340 f2e9096aa63aec4d2315da191d27fdc8 218 Pfam PF02036 SCP-2 sterol transfer family 113 212 2.3E-11 T 13-10-2018 IPR003033 SCP2 sterol-binding domain RAM_47340 f2e9096aa63aec4d2315da191d27fdc8 218 SUPERFAMILY SSF55718 108 217 3.77E-18 T 13-10-2018 IPR036527 SCP2 sterol-binding domain superfamily RAM_47340 f2e9096aa63aec4d2315da191d27fdc8 218 Gene3D G3DSA:3.30.1050.10 106 214 4.9E-19 T 13-10-2018 IPR036527 SCP2 sterol-binding domain superfamily RAM_00810 456db456265cd3e1e6422d7486fd9354 220 Pfam PF06197 Protein of unknown function (DUF998) 23 210 5.6E-24 T 13-10-2018 IPR009339 Protein of unknown function DUF998 RAM_16095 457566fa3b83de1b0c8a848953b97607 292 SUPERFAMILY SSF51735 1 245 3.7E-33 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_16095 457566fa3b83de1b0c8a848953b97607 292 Gene3D G3DSA:3.90.25.10 140 262 1.6E-49 T 13-10-2018 RAM_16095 457566fa3b83de1b0c8a848953b97607 292 Gene3D G3DSA:3.40.50.720 1 197 1.6E-49 T 13-10-2018 RAM_16095 457566fa3b83de1b0c8a848953b97607 292 Pfam PF13460 NAD(P)H-binding 6 185 3.6E-16 T 13-10-2018 IPR016040 NAD(P)-binding domain RAM_18785 605bd5b46c0bcbb98f4323dd4c7155c7 460 Gene3D G3DSA:2.40.30.10 225 321 1.6E-9 T 13-10-2018 RAM_18785 605bd5b46c0bcbb98f4323dd4c7155c7 460 Pfam PF01794 Ferric reductase like transmembrane component 59 177 4.1E-14 T 13-10-2018 IPR013130 Ferric reductase transmembrane component-like domain RAM_18785 605bd5b46c0bcbb98f4323dd4c7155c7 460 SUPERFAMILY SSF63380 225 321 1.06E-12 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RAM_18785 605bd5b46c0bcbb98f4323dd4c7155c7 460 Pfam PF00175 Oxidoreductase NAD-binding domain 335 437 1.3E-6 T 13-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 RAM_18785 605bd5b46c0bcbb98f4323dd4c7155c7 460 Gene3D G3DSA:3.40.50.80 328 460 2.7E-23 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RAM_18785 605bd5b46c0bcbb98f4323dd4c7155c7 460 SUPERFAMILY SSF52343 330 458 9.95E-27 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RAM_26290 af7d9f227ddb8d3dc1b1c784ef39f624 129 Pfam PF13466 STAS domain 37 114 5.5E-13 T 13-10-2018 IPR002645 STAS domain RAM_26290 af7d9f227ddb8d3dc1b1c784ef39f624 129 SUPERFAMILY SSF52091 33 116 1.08E-11 T 13-10-2018 IPR036513 STAS domain superfamily RAM_26290 af7d9f227ddb8d3dc1b1c784ef39f624 129 Gene3D G3DSA:3.30.750.24 19 127 1.1E-16 T 13-10-2018 IPR036513 STAS domain superfamily RAM_38730 fe28077f226af7401fdc6c06d77ae9bd 224 Pfam PF13578 Methyltransferase domain 31 142 2.7E-17 T 13-10-2018 RAM_38730 fe28077f226af7401fdc6c06d77ae9bd 224 SUPERFAMILY SSF53335 8 145 1.81E-15 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_38730 fe28077f226af7401fdc6c06d77ae9bd 224 Gene3D G3DSA:3.40.50.150 4 154 1.0E-23 T 13-10-2018 RAM_06075 62e80cabdc45c210d14e31d7d7ff1505 487 Pfam PF13556 PucR C-terminal helix-turn-helix domain 429 486 1.7E-20 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain RAM_06075 62e80cabdc45c210d14e31d7d7ff1505 487 Pfam PF07905 Purine catabolism regulatory protein-like family 15 123 5.3E-31 T 13-10-2018 IPR012914 Purine catabolism PurC-like domain RAM_06075 62e80cabdc45c210d14e31d7d7ff1505 487 Gene3D G3DSA:1.10.10.2840 363 487 1.6E-18 T 13-10-2018 RAM_24540 8224b140ce7063e4848ad19d068be9a0 140 Pfam PF12802 MarR family 30 85 3.5E-9 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_24540 8224b140ce7063e4848ad19d068be9a0 140 SUPERFAMILY SSF46785 9 134 1.34E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_24540 8224b140ce7063e4848ad19d068be9a0 140 Gene3D G3DSA:1.10.10.10 4 135 6.0E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_24540 8224b140ce7063e4848ad19d068be9a0 140 SMART SM00347 25 123 2.9E-9 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_17640 e0a2aea96cf7ebe1604b37fc7432585b 198 SUPERFAMILY SSF46689 2 71 6.16E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_17640 e0a2aea96cf7ebe1604b37fc7432585b 198 Gene3D G3DSA:1.10.357.10 6 196 8.3E-18 T 13-10-2018 RAM_17640 e0a2aea96cf7ebe1604b37fc7432585b 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 59 1.7E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_12610 b34410d04d19dab2519b3ff5c6a6c5af 176 SUPERFAMILY SSF55729 7 169 1.15E-33 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_12610 b34410d04d19dab2519b3ff5c6a6c5af 176 Pfam PF13302 Acetyltransferase (GNAT) domain 7 145 5.2E-17 T 13-10-2018 IPR000182 GNAT domain RAM_12610 b34410d04d19dab2519b3ff5c6a6c5af 176 Gene3D G3DSA:3.40.630.30 4 176 4.3E-37 T 13-10-2018 RAM_25460 4069af8c0e16bc326e4484e7d410030e 353 SUPERFAMILY SSF52540 22 164 4.72E-18 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_25460 4069af8c0e16bc326e4484e7d410030e 353 SMART SM00382 21 152 0.0029 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_25460 4069af8c0e16bc326e4484e7d410030e 353 Pfam PF07728 AAA domain (dynein-related subfamily) 24 116 8.4E-10 T 13-10-2018 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 RAM_25460 4069af8c0e16bc326e4484e7d410030e 353 Gene3D G3DSA:3.40.50.300 10 162 2.2E-20 T 13-10-2018 RAM_04505 68528291bb6dbbd5ef60544e49cf2ab3 212 Pfam PF09922 Cell wall-active antibiotics response 4TMS YvqF 110 170 4.3E-8 T 13-10-2018 IPR024425 Cell wall-active antibiotics response 4TMS YvqF RAM_04505 68528291bb6dbbd5ef60544e49cf2ab3 212 Pfam PF08044 Domain of unknown function (DUF1707) 9 61 2.1E-23 T 13-10-2018 IPR012551 Protein of unknown function DUF1707 RAM_12280 7858099744f2b78428f693c7e7eb71d3 326 SUPERFAMILY SSF51735 10 322 4.16E-87 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_12280 7858099744f2b78428f693c7e7eb71d3 326 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 9 324 1.7E-112 T 13-10-2018 IPR005886 UDP-glucose 4-epimerase GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-5609977|Reactome: R-HSA-70370 RAM_12280 7858099744f2b78428f693c7e7eb71d3 326 Gene3D G3DSA:3.40.50.720 11 253 2.0E-114 T 13-10-2018 RAM_12280 7858099744f2b78428f693c7e7eb71d3 326 Pfam PF01370 NAD dependent epimerase/dehydratase family 11 253 1.1E-54 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 RAM_12280 7858099744f2b78428f693c7e7eb71d3 326 Gene3D G3DSA:3.90.25.10 177 306 2.0E-114 T 13-10-2018 RAM_33195 af8d4d29cf89e282451812af8e6b61b6 225 SUPERFAMILY SSF53474 3 220 4.74E-28 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_33195 af8d4d29cf89e282451812af8e6b61b6 225 Gene3D G3DSA:3.40.50.1820 2 224 4.6E-37 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_33195 af8d4d29cf89e282451812af8e6b61b6 225 Pfam PF12697 Alpha/beta hydrolase family 4 216 5.1E-19 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_38130 cb463f24f7959c825fe7eae1156b53ef 309 SUPERFAMILY SSF161098 64 292 1.57E-51 T 13-10-2018 IPR035906 MetI-like superfamily RAM_38130 cb463f24f7959c825fe7eae1156b53ef 309 Gene3D G3DSA:1.10.3720.10 60 302 1.1E-63 T 13-10-2018 IPR035906 MetI-like superfamily RAM_38130 cb463f24f7959c825fe7eae1156b53ef 309 SUPERFAMILY SSF160964 23 61 6.28E-6 T 13-10-2018 RAM_38130 cb463f24f7959c825fe7eae1156b53ef 309 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 98 294 3.8E-16 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_24950 1969edcc4c8f43760fc6886918954583 293 TIGRFAM TIGR03620 F420_MSMEG_4141: probable F420-dependent oxidoreductase, MSMEG_4141 family 9 290 3.2E-87 T 13-10-2018 IPR019922 Luciferase-like, F420-dependent oxidoreductase, MSMEG4141, predicted RAM_24950 1969edcc4c8f43760fc6886918954583 293 Pfam PF00296 Luciferase-like monooxygenase 27 265 1.7E-12 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_24950 1969edcc4c8f43760fc6886918954583 293 Gene3D G3DSA:3.20.20.30 13 289 6.2E-22 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_24950 1969edcc4c8f43760fc6886918954583 293 SUPERFAMILY SSF51679 13 293 3.97E-32 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_07985 10756c26bf4126f5a3c5a37aa85ee612 170 PRINTS PR01438 Universal stress protein signature 128 140 8.2E-17 T 13-10-2018 IPR006015 Universal stress protein A RAM_07985 10756c26bf4126f5a3c5a37aa85ee612 170 PRINTS PR01438 Universal stress protein signature 25 43 8.2E-17 T 13-10-2018 IPR006015 Universal stress protein A RAM_07985 10756c26bf4126f5a3c5a37aa85ee612 170 PRINTS PR01438 Universal stress protein signature 146 168 8.2E-17 T 13-10-2018 IPR006015 Universal stress protein A RAM_07985 10756c26bf4126f5a3c5a37aa85ee612 170 Pfam PF00582 Universal stress protein family 25 168 8.9E-28 T 13-10-2018 IPR006016 UspA RAM_07985 10756c26bf4126f5a3c5a37aa85ee612 170 SUPERFAMILY SSF52402 24 168 2.01E-28 T 13-10-2018 RAM_07985 10756c26bf4126f5a3c5a37aa85ee612 170 Gene3D G3DSA:3.40.50.620 13 170 1.8E-42 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAM_45500 b5b4905789b8fcc60a99c2e0661129d6 208 Pfam PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain 5 146 6.5E-7 T 13-10-2018 IPR024344 Mycothiol-dependent maleylpyruvate isomerase, metal-binding domain GO:0046872 RAM_45500 b5b4905789b8fcc60a99c2e0661129d6 208 SUPERFAMILY SSF109854 3 113 8.24E-9 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_45500 b5b4905789b8fcc60a99c2e0661129d6 208 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 4 184 4.7E-33 T 13-10-2018 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type RAM_45500 b5b4905789b8fcc60a99c2e0661129d6 208 TIGRFAM TIGR03085 TIGR03085: TIGR03085 family protein 5 201 1.1E-66 T 13-10-2018 IPR017519 Conserved hypothetical protein CHP03085 RAM_25730 d7227b8010d38d53a41ccb45b8d3a402 167 Pfam PF13586 Transposase DDE domain 72 167 1.3E-21 T 13-10-2018 IPR025668 Transposase DDE domain RAM_29755 d7227b8010d38d53a41ccb45b8d3a402 167 Pfam PF13586 Transposase DDE domain 72 167 1.3E-21 T 13-10-2018 IPR025668 Transposase DDE domain RAM_24385 d7227b8010d38d53a41ccb45b8d3a402 167 Pfam PF13586 Transposase DDE domain 72 167 1.3E-21 T 13-10-2018 IPR025668 Transposase DDE domain RAM_37140 d6b87aed70ecebe52a0e6ca737396b63 66 Gene3D G3DSA:3.30.70.20 1 65 3.5E-21 T 13-10-2018 RAM_37140 d6b87aed70ecebe52a0e6ca737396b63 66 PRINTS PR00352 3Fe-4S ferredoxin signature 16 26 2.3E-7 T 13-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 RAM_37140 d6b87aed70ecebe52a0e6ca737396b63 66 PRINTS PR00352 3Fe-4S ferredoxin signature 5 16 2.3E-7 T 13-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 RAM_37140 d6b87aed70ecebe52a0e6ca737396b63 66 PRINTS PR00352 3Fe-4S ferredoxin signature 48 60 2.3E-7 T 13-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 RAM_37140 d6b87aed70ecebe52a0e6ca737396b63 66 SUPERFAMILY SSF54862 2 63 9.42E-14 T 13-10-2018 RAM_37140 d6b87aed70ecebe52a0e6ca737396b63 66 Pfam PF13370 4Fe-4S single cluster domain of Ferredoxin I 5 61 3.7E-13 T 13-10-2018 RAM_02575 20a23b1d78fb2e3920f714b6fe968572 70 Gene3D G3DSA:1.10.1660.10 7 64 2.7E-11 T 13-10-2018 RAM_02575 20a23b1d78fb2e3920f714b6fe968572 70 SUPERFAMILY SSF46955 8 59 2.52E-11 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily RAM_02575 20a23b1d78fb2e3920f714b6fe968572 70 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 9 57 1.1E-11 T 13-10-2018 IPR010093 SinI-like, DNA-binding domain GO:0003677 RAM_02575 20a23b1d78fb2e3920f714b6fe968572 70 Pfam PF12728 Helix-turn-helix domain 9 58 1.4E-11 T 13-10-2018 RAM_41175 0510d658a7ee3b69765dfbc97636fc23 73 SUPERFAMILY SSF158997 6 63 1.24E-14 T 13-10-2018 RAM_41175 0510d658a7ee3b69765dfbc97636fc23 73 Gene3D G3DSA:2.20.25.10 12 69 1.2E-15 T 13-10-2018 RAM_41175 0510d658a7ee3b69765dfbc97636fc23 73 Pfam PF03966 Trm112p-like protein 7 50 4.3E-8 T 13-10-2018 IPR005651 Trm112-like RAM_41465 e48518fddbfd8a72e2a96ee199b4fcb7 155 Gene3D G3DSA:1.10.3450.10 23 154 5.0E-15 T 13-10-2018 RAM_41465 e48518fddbfd8a72e2a96ee199b4fcb7 155 SUPERFAMILY SSF140663 29 139 1.44E-27 T 13-10-2018 IPR023203 TTHA0068-like superfamily RAM_41465 e48518fddbfd8a72e2a96ee199b4fcb7 155 Pfam PF03745 Domain of unknown function (DUF309) 47 105 2.4E-20 T 13-10-2018 IPR005500 Protein of unknown function DUF309 RAM_29780 5641800270be63ae18be320f2b22e4c4 376 Pfam PF09344 CT1975-like protein 3 363 1.3E-118 T 13-10-2018 IPR010148 CRISPR-associated protein, CT1975 RAM_29780 5641800270be63ae18be320f2b22e4c4 376 TIGRFAM TIGR01869 casC_Cse4: CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI 3 332 1.7E-97 T 13-10-2018 IPR010148 CRISPR-associated protein, CT1975 RAM_39150 0abc8e4a136f396e891b36bd15dfa03e 264 Pfam PF02405 Permease MlaE 43 254 2.1E-60 T 13-10-2018 IPR030802 ABC transporter permease MalE GO:0043190 RAM_28205 6ea3b5372ead8633926953896635f029 109 Gene3D G3DSA:3.40.50.1390 2 93 2.3E-5 T 13-10-2018 RAM_30330 4d675c8eeba8ed2c11a18de0b6043133 70 SUPERFAMILY SSF46955 13 62 9.16E-9 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily RAM_30330 4d675c8eeba8ed2c11a18de0b6043133 70 Pfam PF12728 Helix-turn-helix domain 14 61 1.3E-6 T 13-10-2018 RAM_23650 10298d8cd6cf687dfbfc93c10e60044f 694 Pfam PF13515 Fusaric acid resistance protein-like 376 501 2.7E-12 T 13-10-2018 RAM_34885 8bfde0aa2d83d9e2bca630b855859af5 244 Gene3D G3DSA:3.40.50.720 1 241 1.9E-71 T 13-10-2018 RAM_34885 8bfde0aa2d83d9e2bca630b855859af5 244 SUPERFAMILY SSF51735 5 241 1.07E-70 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_34885 8bfde0aa2d83d9e2bca630b855859af5 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 124 140 4.6E-28 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_34885 8bfde0aa2d83d9e2bca630b855859af5 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 188 4.6E-28 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_34885 8bfde0aa2d83d9e2bca630b855859af5 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 205 225 4.6E-28 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_34885 8bfde0aa2d83d9e2bca630b855859af5 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 4.6E-28 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_34885 8bfde0aa2d83d9e2bca630b855859af5 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 169 4.6E-28 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_34885 8bfde0aa2d83d9e2bca630b855859af5 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 4.6E-28 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_34885 8bfde0aa2d83d9e2bca630b855859af5 244 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 241 5.3E-53 T 13-10-2018 RAM_34885 8bfde0aa2d83d9e2bca630b855859af5 244 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 181 0.0062 T 13-10-2018 RAM_29180 a96971e55b734eb345fece00d4691fa0 109 SUPERFAMILY SSF159894 5 103 4.71E-14 T 13-10-2018 RAM_29180 a96971e55b734eb345fece00d4691fa0 109 Pfam PF04993 TfoX N-terminal domain 16 102 8.6E-13 T 13-10-2018 IPR007076 TfoX, N-terminal RAM_24300 ecb5bb9edfd9eac756eda7edb99133c9 341 SUPERFAMILY SSF46785 30 88 1.59E-6 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_24300 ecb5bb9edfd9eac756eda7edb99133c9 341 Pfam PF13649 Methyltransferase domain 167 271 5.7E-9 T 13-10-2018 RAM_24300 ecb5bb9edfd9eac756eda7edb99133c9 341 Gene3D G3DSA:3.40.50.150 165 330 4.5E-31 T 13-10-2018 RAM_24300 ecb5bb9edfd9eac756eda7edb99133c9 341 SUPERFAMILY SSF53335 150 335 4.93E-30 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_24300 ecb5bb9edfd9eac756eda7edb99133c9 341 Pfam PF12840 Helix-turn-helix domain 27 82 2.0E-6 T 13-10-2018 RAM_23320 167d46d8674348027458d048e89e8542 276 SUPERFAMILY SSF51658 18 270 1.93E-57 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily RAM_23320 167d46d8674348027458d048e89e8542 276 PIRSF PIRSF006241 12 275 2.3E-64 T 13-10-2018 IPR026040 Hydroxypyruvate isomerase-like RAM_23320 167d46d8674348027458d048e89e8542 276 Pfam PF01261 Xylose isomerase-like TIM barrel 34 232 5.9E-26 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain RAM_23320 167d46d8674348027458d048e89e8542 276 Gene3D G3DSA:3.20.20.150 9 274 2.8E-61 T 13-10-2018 RAM_01800 a3138e481d74f7f984b09ccccde3d380 449 Pfam PF12307 Protein of unknown function (DUF3631) 260 444 1.8E-68 T 13-10-2018 IPR022081 Domain of unknown function DUF3631 RAM_19465 c2fecd3d26e59b27f3c1a7bfa7ae8f71 441 Gene3D G3DSA:3.40.50.12780 10 339 7.4E-72 T 13-10-2018 RAM_19465 c2fecd3d26e59b27f3c1a7bfa7ae8f71 441 SUPERFAMILY SSF56801 89 410 3.79E-20 T 13-10-2018 RAM_01160 746d68aa1ade2a56c3023789ff75b0fb 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 1.4E-14 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_01160 746d68aa1ade2a56c3023789ff75b0fb 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 1.4E-14 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_01160 746d68aa1ade2a56c3023789ff75b0fb 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 1.4E-14 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_01160 746d68aa1ade2a56c3023789ff75b0fb 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 1.4E-14 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_01160 746d68aa1ade2a56c3023789ff75b0fb 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 1.4E-14 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_01160 746d68aa1ade2a56c3023789ff75b0fb 251 Pfam PF00106 short chain dehydrogenase 12 200 1.5E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_01160 746d68aa1ade2a56c3023789ff75b0fb 251 Gene3D G3DSA:3.40.50.720 11 245 1.2E-33 T 13-10-2018 RAM_01160 746d68aa1ade2a56c3023789ff75b0fb 251 SUPERFAMILY SSF51735 11 248 9.06E-38 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_15995 6297520d83b4ae3fc4240f9336ee3c34 474 Pfam PF01547 Bacterial extracellular solute-binding protein 74 364 1.5E-19 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein RAM_15995 6297520d83b4ae3fc4240f9336ee3c34 474 Gene3D G3DSA:3.40.190.10 61 466 1.6E-43 T 13-10-2018 RAM_15995 6297520d83b4ae3fc4240f9336ee3c34 474 SUPERFAMILY SSF53850 65 463 1.31E-40 T 13-10-2018 RAM_01565 aa55611b10926c1090706588b45c4108 67 Pfam PF14013 MT0933-like antitoxin protein 10 56 5.4E-13 T 13-10-2018 IPR028037 Antitoxin Rv0909/MT0933 RAM_24200 8effc8bf0508a88cd61d19cef194c911 127 Pfam PF12680 SnoaL-like domain 17 115 1.4E-15 T 13-10-2018 IPR037401 SnoaL-like domain RAM_24200 8effc8bf0508a88cd61d19cef194c911 127 SUPERFAMILY SSF54427 10 122 2.24E-20 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_24200 8effc8bf0508a88cd61d19cef194c911 127 Gene3D G3DSA:3.10.450.50 11 122 1.6E-27 T 13-10-2018 RAM_28005 2750d874568f94db485b76c291c6ca9e 210 Pfam PF02517 CAAX protease self-immunity 47 144 1.5E-13 T 13-10-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 RAM_37645 722114e02343fe65a9dd16d70681a0ae 258 Pfam PF10935 Protein of unknown function (DUF2637) 23 147 3.4E-14 T 13-10-2018 IPR021235 Protein of unknown function DUF2637 RAM_42585 016c95493697930ef00c5abbcdc8fec8 399 Gene3D G3DSA:3.40.640.10 67 291 7.8E-113 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_42585 016c95493697930ef00c5abbcdc8fec8 399 Pfam PF00155 Aminotransferase class I and II 76 378 2.1E-27 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RAM_42585 016c95493697930ef00c5abbcdc8fec8 399 Gene3D G3DSA:3.90.1150.10 27 386 7.8E-113 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_42585 016c95493697930ef00c5abbcdc8fec8 399 SUPERFAMILY SSF53383 27 389 3.2E-80 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_37355 3db2a1b5756ad090c466b251661d889b 300 Pfam PF04909 Amidohydrolase 29 296 3.1E-24 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RAM_37355 3db2a1b5756ad090c466b251661d889b 300 Gene3D G3DSA:3.20.20.140 15 299 2.8E-63 T 13-10-2018 RAM_37355 3db2a1b5756ad090c466b251661d889b 300 SUPERFAMILY SSF51556 24 296 1.58E-56 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_16305 17f57552288f8cd09ae7b9ef6d21726d 117 SUPERFAMILY SSF52091 2 99 6.08E-14 T 13-10-2018 IPR036513 STAS domain superfamily RAM_16305 17f57552288f8cd09ae7b9ef6d21726d 117 Gene3D G3DSA:3.30.750.24 1 102 5.3E-18 T 13-10-2018 IPR036513 STAS domain superfamily RAM_16305 17f57552288f8cd09ae7b9ef6d21726d 117 Pfam PF13466 STAS domain 3 86 2.9E-8 T 13-10-2018 IPR002645 STAS domain RAM_21115 5847bd518a0f8db70e1430cfbee6690c 386 Pfam PF06245 Protein of unknown function (DUF1015) 101 384 6.2E-30 T 13-10-2018 IPR008323 Uncharacterised conserved protein UCP033563 RAM_23430 c5d94b410407e0b56038573e2abfa662 205 ProDom PD037769 DNA-BINDING YHEO UNCHARACTERIZED BACTERIA SIMILAR HI0575 CONTAINING TRANSCRIPTION REGULATOR HELIX-TURN-HELIX 7 111 5.0E-38 T 13-10-2018 IPR013559 YheO-like RAM_23430 c5d94b410407e0b56038573e2abfa662 205 Pfam PF08348 YheO-like PAS domain 8 116 1.2E-30 T 13-10-2018 IPR013559 YheO-like RAM_23430 c5d94b410407e0b56038573e2abfa662 205 Pfam PF13309 HTH domain 144 205 2.8E-16 T 13-10-2018 IPR039445 Transcriptional regulator DauR-like, HTH domain RAM_34125 374dc62d0af528132369bbef47715614 136 Gene3D G3DSA:3.10.450.50 1 135 3.1E-42 T 13-10-2018 RAM_34125 374dc62d0af528132369bbef47715614 136 SUPERFAMILY SSF54427 1 136 7.67E-33 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_34125 374dc62d0af528132369bbef47715614 136 TIGRFAM TIGR02246 TIGR02246: conserved hypothetical protein 5 131 2.0E-28 T 13-10-2018 IPR011944 Steroid delta5-4-isomerase KEGG: 00140+5.3.3.1|KEGG: 00984+5.3.3.1|MetaCyc: PWY-2582|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-699|MetaCyc: PWY-7299 RAM_34125 374dc62d0af528132369bbef47715614 136 Pfam PF14534 Domain of unknown function (DUF4440) 9 123 6.2E-11 T 13-10-2018 IPR027843 Domain of unknown function DUF4440 RAM_29160 4a30a85bb3e966d18c057bcb43e21e20 152 SUPERFAMILY SSF55961 4 141 1.28E-26 T 13-10-2018 RAM_29160 4a30a85bb3e966d18c057bcb43e21e20 152 Gene3D G3DSA:3.30.530.20 2 140 3.5E-30 T 13-10-2018 IPR023393 START-like domain superfamily RAM_29160 4a30a85bb3e966d18c057bcb43e21e20 152 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 11 138 1.0E-20 T 13-10-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like RAM_32800 7b9e15b8925c35dbe390b71fae2890b0 276 Pfam PF00561 alpha/beta hydrolase fold 12 124 8.1E-23 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_32800 7b9e15b8925c35dbe390b71fae2890b0 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 93 106 2.0E-6 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_32800 7b9e15b8925c35dbe390b71fae2890b0 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 79 92 2.0E-6 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_32800 7b9e15b8925c35dbe390b71fae2890b0 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 35 50 2.0E-6 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_32800 7b9e15b8925c35dbe390b71fae2890b0 276 SUPERFAMILY SSF53474 2 273 9.84E-60 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_32800 7b9e15b8925c35dbe390b71fae2890b0 276 PRINTS PR00412 Epoxide hydrolase signature 93 106 3.1E-5 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_32800 7b9e15b8925c35dbe390b71fae2890b0 276 PRINTS PR00412 Epoxide hydrolase signature 17 35 3.1E-5 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_32800 7b9e15b8925c35dbe390b71fae2890b0 276 PRINTS PR00412 Epoxide hydrolase signature 79 92 3.1E-5 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_32800 7b9e15b8925c35dbe390b71fae2890b0 276 Gene3D G3DSA:3.40.50.1820 1 273 1.7E-74 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_05825 0a6373e8bf11a54c6d2686707a2d7b26 330 Pfam PF04228 Putative neutral zinc metallopeptidase 121 321 1.4E-22 T 13-10-2018 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative RAM_01810 198da3a854fd425476b154934dec7771 117 SUPERFAMILY SSF52309 16 111 7.32E-5 T 13-10-2018 RAM_41700 6890320b825233b82478262924e2cdb8 81 Gene3D G3DSA:1.10.287.1060 2 81 7.0E-9 T 13-10-2018 RAM_41700 6890320b825233b82478262924e2cdb8 81 SUPERFAMILY SSF140453 4 74 1.96E-7 T 13-10-2018 IPR036689 ESAT-6-like superfamily RAM_17890 4e455bb380001df2edb7881e4c936df2 396 Gene3D G3DSA:1.20.1530.20 6 390 6.3E-61 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily RAM_17890 4e455bb380001df2edb7881e4c936df2 396 Pfam PF00999 Sodium/hydrogen exchanger family 12 382 1.9E-52 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 RAM_00340 9ca069de13e41748825892bf82de3656 310 SUPERFAMILY SSF161098 85 296 8.11E-20 T 13-10-2018 IPR035906 MetI-like superfamily RAM_00340 9ca069de13e41748825892bf82de3656 310 Gene3D G3DSA:1.10.3720.10 84 303 7.9E-23 T 13-10-2018 IPR035906 MetI-like superfamily RAM_00340 9ca069de13e41748825892bf82de3656 310 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 109 308 1.8E-34 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_44230 1f1b69b3840ead4a395901ff937f3b31 127 TIGRFAM TIGR03618 Rv1155_F420: PPOX class probable F420-dependent enzyme 7 121 2.7E-28 T 13-10-2018 IPR019920 F420-binding domain, putative RAM_44230 1f1b69b3840ead4a395901ff937f3b31 127 Gene3D G3DSA:2.30.110.10 1 124 2.8E-32 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_44230 1f1b69b3840ead4a395901ff937f3b31 127 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 3 83 1.7E-15 T 13-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RAM_44230 1f1b69b3840ead4a395901ff937f3b31 127 SUPERFAMILY SSF50475 2 122 2.32E-27 T 13-10-2018 RAM_29020 c8884ac72021db04c6ffdaec00356a56 78 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 2 47 2.7E-14 T 13-10-2018 IPR025161 Putative transposase IS4/IS5 family RAM_30125 1b984b27c85a0a0d95d6d4e8a7c597b4 351 SUPERFAMILY SSF54001 231 348 3.6E-41 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily RAM_30125 1b984b27c85a0a0d95d6d4e8a7c597b4 351 Pfam PF00877 NlpC/P60 family 251 343 1.9E-25 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain RAM_30125 1b984b27c85a0a0d95d6d4e8a7c597b4 351 Gene3D G3DSA:3.90.1720.10 150 347 2.5E-51 T 13-10-2018 RAM_05105 52474d2a645106a79a4aa92681170947 234 SUPERFAMILY SSF56801 15 229 1.1E-14 T 13-10-2018 RAM_05105 52474d2a645106a79a4aa92681170947 234 TIGRFAM TIGR03089 TIGR03089: TIGR03089 family protein 13 229 4.8E-54 T 13-10-2018 IPR017523 Conserved hypothetical protein CHP03089 RAM_05105 52474d2a645106a79a4aa92681170947 234 Gene3D G3DSA:3.40.50.12780 19 233 3.4E-8 T 13-10-2018 RAM_35595 297ba0a378624790c775795f5b618057 383 Pfam PF06187 Protein of unknown function (DUF993) 26 382 1.6E-163 T 13-10-2018 IPR009334 Protein of unknown function DUF993 RAM_35595 297ba0a378624790c775795f5b618057 383 SUPERFAMILY SSF51569 53 327 1.0E-10 T 13-10-2018 RAM_35595 297ba0a378624790c775795f5b618057 383 Gene3D G3DSA:3.20.20.500 9 378 1.6E-156 T 13-10-2018 RAM_21120 58e8f5b9ed816c8369670ed7e7d45d74 254 SUPERFAMILY SSF48239 45 251 2.67E-10 T 13-10-2018 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid RAM_17580 a7c72951c8d4d62cfb5e82a020993d6f 490 SUPERFAMILY SSF51338 2 485 1.79E-17 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_17580 a7c72951c8d4d62cfb5e82a020993d6f 490 Pfam PF07969 Amidohydrolase family 44 470 4.6E-13 T 13-10-2018 IPR013108 Amidohydrolase 3 RAM_17580 a7c72951c8d4d62cfb5e82a020993d6f 490 SUPERFAMILY SSF51556 55 414 1.53E-29 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_14405 7451b0fb5162b0563ea33ce8736be4ed 133 SUPERFAMILY SSF117916 34 127 1.21E-28 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily RAM_14405 7451b0fb5162b0563ea33ce8736be4ed 133 Pfam PF01883 Iron-sulfur cluster assembly protein 34 101 1.1E-19 T 13-10-2018 IPR002744 MIP18 family-like RAM_14405 7451b0fb5162b0563ea33ce8736be4ed 133 Gene3D G3DSA:3.30.300.130 29 128 2.8E-32 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily RAM_07910 a6867b2ecf1b1770ad1e8639b90721a8 223 Gene3D G3DSA:1.10.357.10 5 210 1.9E-43 T 13-10-2018 RAM_07910 a6867b2ecf1b1770ad1e8639b90721a8 223 Pfam PF00440 Bacterial regulatory proteins, tetR family 21 67 1.9E-15 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_07910 a6867b2ecf1b1770ad1e8639b90721a8 223 SUPERFAMILY SSF46689 6 77 3.8E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_07910 a6867b2ecf1b1770ad1e8639b90721a8 223 ProSitePatterns PS01081 TetR-type HTH domain signature. 33 63 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RAM_07910 a6867b2ecf1b1770ad1e8639b90721a8 223 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 42 65 2.2E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_07910 a6867b2ecf1b1770ad1e8639b90721a8 223 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 21 34 2.2E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_30845 78141b369692cc1e51057547f2919de7 386 Pfam PF01757 Acyltransferase family 24 360 1.2E-27 T 13-10-2018 IPR002656 Acyltransferase 3 GO:0016747 RAM_43245 ce209f7bb0fa1d00856e5b786c7c53d7 396 Pfam PF12698 ABC-2 family transporter protein 33 373 3.4E-48 T 13-10-2018 RAM_18925 0f4cb2a22b9e28f956ba4fe91db1f058 462 Gene3D G3DSA:1.20.1720.10 20 206 6.6E-43 T 13-10-2018 RAM_18925 0f4cb2a22b9e28f956ba4fe91db1f058 462 SUPERFAMILY SSF103473 17 456 3.53E-67 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_18925 0f4cb2a22b9e28f956ba4fe91db1f058 462 Pfam PF07690 Major Facilitator Superfamily 25 412 2.2E-54 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_18925 0f4cb2a22b9e28f956ba4fe91db1f058 462 Gene3D G3DSA:1.20.1250.20 263 462 2.9E-24 T 13-10-2018 RAM_11915 298bbce62863a4236b88ab848441167c 64 Pfam PF11248 Protein of unknown function (DUF3046) 1 62 2.8E-29 T 13-10-2018 IPR021408 Protein of unknown function DUF3046 RAM_10415 c210b6f5866518ec95348878d456780f 405 Pfam PF07690 Major Facilitator Superfamily 43 251 1.7E-8 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_10415 c210b6f5866518ec95348878d456780f 405 Gene3D G3DSA:1.20.1250.20 17 395 1.3E-26 T 13-10-2018 RAM_10415 c210b6f5866518ec95348878d456780f 405 SUPERFAMILY SSF103473 28 401 2.09E-33 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_25930 6bdb8165bad8e99359dd1da96b7e2d58 374 Pfam PF01494 FAD binding domain 5 343 2.0E-35 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_25930 6bdb8165bad8e99359dd1da96b7e2d58 374 Gene3D G3DSA:3.50.50.60 5 361 5.6E-73 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_25930 6bdb8165bad8e99359dd1da96b7e2d58 374 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 329 345 4.2E-23 T 13-10-2018 RAM_25930 6bdb8165bad8e99359dd1da96b7e2d58 374 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 280 295 4.2E-23 T 13-10-2018 RAM_25930 6bdb8165bad8e99359dd1da96b7e2d58 374 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 295 311 4.2E-23 T 13-10-2018 RAM_25930 6bdb8165bad8e99359dd1da96b7e2d58 374 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 151 166 4.2E-23 T 13-10-2018 RAM_25930 6bdb8165bad8e99359dd1da96b7e2d58 374 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 4.2E-23 T 13-10-2018 RAM_25930 6bdb8165bad8e99359dd1da96b7e2d58 374 SUPERFAMILY SSF51905 5 354 4.37E-62 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_47515 22a3b0e308d6e10c1561d0f461dee6d6 304 ProSitePatterns PS00211 ABC transporters family signature. 128 142 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_47515 22a3b0e308d6e10c1561d0f461dee6d6 304 SUPERFAMILY SSF52540 2 223 2.38E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_47515 22a3b0e308d6e10c1561d0f461dee6d6 304 SMART SM00382 26 204 1.7E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_47515 22a3b0e308d6e10c1561d0f461dee6d6 304 Pfam PF00005 ABC transporter 18 156 1.6E-24 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_47515 22a3b0e308d6e10c1561d0f461dee6d6 304 Gene3D G3DSA:3.40.50.300 1 228 5.0E-56 T 13-10-2018 RAM_43435 a068b58923be0418a2b8f4a495549f22 396 Pfam PF09594 Glycosyltransferase family 87 53 289 7.0E-50 T 13-10-2018 IPR018584 Glycosyltransferase family 87 GO:0016758 RAM_11005 074cbdafe38cc957614cca2564d9593b 316 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 17 34 6.0E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_11005 074cbdafe38cc957614cca2564d9593b 316 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 94 105 6.0E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_11005 074cbdafe38cc957614cca2564d9593b 316 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 139 155 6.0E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_11005 074cbdafe38cc957614cca2564d9593b 316 Pfam PF00106 short chain dehydrogenase 17 218 1.3E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_11005 074cbdafe38cc957614cca2564d9593b 316 SUPERFAMILY SSF51735 14 263 2.38E-49 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_11005 074cbdafe38cc957614cca2564d9593b 316 Gene3D G3DSA:3.40.50.720 1 313 2.1E-75 T 13-10-2018 RAM_32620 0738ea92ad8d629098fa1557a6b7ee08 406 SUPERFAMILY SSF53756 178 322 1.54E-6 T 13-10-2018 RAM_06215 01ef34518cf565ab566e651afab6ebad 84 Pfam PF01384 Phosphate transporter family 21 70 3.6E-13 T 13-10-2018 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 RAM_44680 7e57f3628b352622a3d5755901b2ca27 100 SUPERFAMILY SSF54909 1 94 3.83E-22 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_44680 7e57f3628b352622a3d5755901b2ca27 100 Pfam PF03992 Antibiotic biosynthesis monooxygenase 3 73 8.6E-17 T 13-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain RAM_44680 7e57f3628b352622a3d5755901b2ca27 100 Gene3D G3DSA:3.30.70.100 1 97 8.4E-34 T 13-10-2018 RAM_33835 d4d4f008382fe9b84a50a5759be56fd1 175 Pfam PF04978 Protein of unknown function (DUF664) 18 171 1.7E-43 T 13-10-2018 IPR007061 Protein of unknown function DUF664 RAM_33835 d4d4f008382fe9b84a50a5759be56fd1 175 SUPERFAMILY SSF109854 5 170 1.83E-47 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_33835 d4d4f008382fe9b84a50a5759be56fd1 175 Gene3D G3DSA:1.20.120.450 8 174 1.9E-42 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_27155 b049e15ec3c48105acc89da0f43dd8df 400 Gene3D G3DSA:1.10.150.130 18 125 3.3E-20 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal RAM_27155 b049e15ec3c48105acc89da0f43dd8df 400 Pfam PF14659 Phage integrase, N-terminal SAM-like domain 22 56 3.2E-6 T 13-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 RAM_27155 b049e15ec3c48105acc89da0f43dd8df 400 Pfam PF00589 Phage integrase family 159 345 9.1E-6 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RAM_27155 b049e15ec3c48105acc89da0f43dd8df 400 SUPERFAMILY SSF56349 22 352 2.21E-37 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RAM_27155 b049e15ec3c48105acc89da0f43dd8df 400 Gene3D G3DSA:1.10.443.10 147 358 2.0E-25 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 RAM_28880 5b25e2901f6114fbc27a0afdba3fb33d 296 Gene3D G3DSA:2.40.260.10 44 217 1.3E-23 T 13-10-2018 IPR023365 Sortase domain superfamily RAM_28880 5b25e2901f6114fbc27a0afdba3fb33d 296 Pfam PF04203 Sortase family 91 194 3.2E-12 T 13-10-2018 IPR005754 Sortase family RAM_28880 5b25e2901f6114fbc27a0afdba3fb33d 296 SUPERFAMILY SSF63817 81 192 1.79E-14 T 13-10-2018 IPR023365 Sortase domain superfamily RAM_13250 5cb0eba6bcbae8ab6e8f8c46e809ea61 221 Pfam PF12502 Protein of unknown function (DUF3710) 45 212 1.2E-57 T 13-10-2018 IPR022183 Protein of unknown function DUF3710 RAM_46185 80d55ff92d9997953444a79d72cfc2e3 305 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 99 304 1.7E-27 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_46185 80d55ff92d9997953444a79d72cfc2e3 305 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 28 298 2.6E-79 T 13-10-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 RAM_46185 80d55ff92d9997953444a79d72cfc2e3 305 SUPERFAMILY SSF161098 34 293 9.29E-41 T 13-10-2018 IPR035906 MetI-like superfamily RAM_46185 80d55ff92d9997953444a79d72cfc2e3 305 Gene3D G3DSA:1.10.3720.10 75 304 7.5E-34 T 13-10-2018 IPR035906 MetI-like superfamily RAM_13680 496674db04fd4695b2f136ef080d8338 133 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 12 122 3.5E-21 T 13-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 RAM_13680 496674db04fd4695b2f136ef080d8338 133 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 10 127 17.982 T 13-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 RAM_01335 05f746b5679f5d9e2bb820c48977605f 134 Pfam PF04686 Streptomyces sporulation and cell division protein, SsgA 21 118 2.0E-31 T 13-10-2018 IPR006776 Sporulation-specific cell division protein SsgB GO:0051301 RAM_01335 05f746b5679f5d9e2bb820c48977605f 134 Gene3D G3DSA:2.30.31.20 2 132 2.5E-40 T 13-10-2018 IPR038658 Sporulation-specific cell division protein SsgB superfamily RAM_44475 5f691ae39f0a04f6a68dd86cf8064af5 280 Gene3D G3DSA:1.20.120.350 18 130 9.9E-15 T 13-10-2018 IPR027359 Voltage-dependent channel domain superfamily RAM_44475 5f691ae39f0a04f6a68dd86cf8064af5 280 SUPERFAMILY SSF81324 21 110 5.1E-8 T 13-10-2018 RAM_03220 83531773745714d20b9018939e9a5243 303 SUPERFAMILY SSF53067 5 295 1.87E-42 T 13-10-2018 RAM_03220 83531773745714d20b9018939e9a5243 303 Gene3D G3DSA:3.30.420.40 7 290 2.8E-55 T 13-10-2018 RAM_03220 83531773745714d20b9018939e9a5243 303 Gene3D G3DSA:3.30.420.40 125 278 2.8E-55 T 13-10-2018 RAM_03220 83531773745714d20b9018939e9a5243 303 Pfam PF00480 ROK family 7 294 3.7E-41 T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 RAM_00060 53e451c24ce0c239b5e51d06fc644804 518 Pfam PF12307 Protein of unknown function (DUF3631) 259 443 2.2E-65 T 13-10-2018 IPR022081 Domain of unknown function DUF3631 RAM_44380 9ba8e767540c9a8ea1cceb7b14a94a70 329 SUPERFAMILY SSF53335 31 217 2.97E-12 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_44380 9ba8e767540c9a8ea1cceb7b14a94a70 329 Gene3D G3DSA:3.40.50.150 15 214 4.8E-11 T 13-10-2018 RAM_44380 9ba8e767540c9a8ea1cceb7b14a94a70 329 Pfam PF09243 Mitochondrial small ribosomal subunit Rsm22 51 326 1.6E-82 T 13-10-2018 IPR015324 Ribosomal protein Rsm22-like GO:0006412|GO:0008168 RAM_05955 175c792e4c2ab77937e0cb1592fac1c9 245 Pfam PF02591 C4-type zinc ribbon domain 203 237 7.8E-12 T 13-10-2018 IPR003743 C4-type zinc ribbon domain RAM_11405 832436bc8910824ad532b7c16c6b5d21 256 SUPERFAMILY SSF140453 4 99 1.29E-6 T 13-10-2018 IPR036689 ESAT-6-like superfamily RAM_26200 6424c967ba1fc0689c31c3c0c64526c2 164 Gene3D G3DSA:3.30.565.10 21 158 2.2E-22 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_16610 952b1bd79f652e487587ca858a3fbe79 81 Pfam PF09954 Uncharacterized protein conserved in bacteria (DUF2188) 12 69 2.0E-9 T 13-10-2018 IPR018691 Protein of unknown function DUF2188 RAM_06530 66917022985ad200add92d37230a1ef6 248 Gene3D G3DSA:3.40.30.10 37 248 5.8E-47 T 13-10-2018 RAM_06530 66917022985ad200add92d37230a1ef6 248 Pfam PF13462 Thioredoxin 71 247 1.8E-20 T 13-10-2018 IPR012336 Thioredoxin-like fold RAM_06530 66917022985ad200add92d37230a1ef6 248 SUPERFAMILY SSF52833 65 247 3.46E-28 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RAM_26440 af4c671cfa52c896459b5cfce22ff4f3 423 SUPERFAMILY SSF53850 22 411 8.28E-38 T 13-10-2018 RAM_26440 af4c671cfa52c896459b5cfce22ff4f3 423 Gene3D G3DSA:3.40.190.10 50 350 2.6E-51 T 13-10-2018 RAM_26440 af4c671cfa52c896459b5cfce22ff4f3 423 Gene3D G3DSA:3.40.190.10 144 410 2.6E-51 T 13-10-2018 RAM_26440 af4c671cfa52c896459b5cfce22ff4f3 423 Pfam PF13416 Bacterial extracellular solute-binding protein 52 351 2.4E-23 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein RAM_12020 f2b770df00e97a38644691aff4344ff9 242 Pfam PF00005 ABC transporter 17 165 1.1E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_12020 f2b770df00e97a38644691aff4344ff9 242 SMART SM00382 26 213 1.1E-18 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_12020 f2b770df00e97a38644691aff4344ff9 242 PIRSF PIRSF039085 1 241 1.5E-110 T 13-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 RAM_12020 f2b770df00e97a38644691aff4344ff9 242 Gene3D G3DSA:3.40.50.300 1 242 3.9E-78 T 13-10-2018 RAM_12020 f2b770df00e97a38644691aff4344ff9 242 SUPERFAMILY SSF52540 1 235 6.08E-80 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_12020 f2b770df00e97a38644691aff4344ff9 242 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_39170 7495f46d2f1fbc10db26367fce2c18d8 277 PIRSF PIRSF006648 4 277 4.7E-53 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 RAM_39170 7495f46d2f1fbc10db26367fce2c18d8 277 Pfam PF01061 ABC-2 type transporter 26 241 2.9E-30 T 13-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 RAM_45790 7e985e92f491f2e49f6af5090e668e72 316 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 143 312 8.1E-26 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_45790 7e985e92f491f2e49f6af5090e668e72 316 Gene3D G3DSA:1.10.3720.10 117 313 3.8E-25 T 13-10-2018 IPR035906 MetI-like superfamily RAM_45790 7e985e92f491f2e49f6af5090e668e72 316 SUPERFAMILY SSF161098 118 305 9.94E-30 T 13-10-2018 IPR035906 MetI-like superfamily RAM_44305 d5edfc6055c3137bbc52320f49d00fe3 99 Pfam PF00741 Gas vesicle protein 7 45 5.6E-17 T 13-10-2018 IPR000638 Gas vesicle protein GvpA GO:0005198|GO:0012506 RAM_44305 d5edfc6055c3137bbc52320f49d00fe3 99 ProSitePatterns PS00234 Gas vesicles protein GVPa signature 1. 8 22 - T 13-10-2018 IPR018493 Gas vesicle protein GvpA, conserved site GO:0005198|GO:0012506 RAM_45560 854b02c7708eaef5a4fe4af1c8da6148 493 Pfam PF01435 Peptidase family M48 84 312 1.1E-14 T 13-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 RAM_08925 c68de016bfb71f3a07b97924892fadb5 289 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 46 57 - T 13-10-2018 IPR023827 Peptidase S8, subtilisin, Asp-active site RAM_08925 c68de016bfb71f3a07b97924892fadb5 289 Pfam PF00082 Subtilase family 42 268 5.0E-27 T 13-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RAM_08925 c68de016bfb71f3a07b97924892fadb5 289 SUPERFAMILY SSF52743 19 275 1.7E-59 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RAM_08925 c68de016bfb71f3a07b97924892fadb5 289 Gene3D G3DSA:3.40.50.200 16 286 6.7E-75 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RAM_08925 c68de016bfb71f3a07b97924892fadb5 289 PRINTS PR00723 Subtilisin serine protease family (S8) signature 41 60 4.5E-18 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related RAM_08925 c68de016bfb71f3a07b97924892fadb5 289 PRINTS PR00723 Subtilisin serine protease family (S8) signature 230 246 4.5E-18 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related RAM_08925 c68de016bfb71f3a07b97924892fadb5 289 PRINTS PR00723 Subtilisin serine protease family (S8) signature 79 92 4.5E-18 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related RAM_24180 25df03edb5ee4a64aecfdbbd2ab17a95 431 Gene3D G3DSA:3.20.20.240 3 367 8.7E-123 T 13-10-2018 RAM_24180 25df03edb5ee4a64aecfdbbd2ab17a95 431 PIRSF PIRSF001495 5 427 3.3E-127 T 13-10-2018 IPR006396 Glutamate mutase epsilon subunit GO:0019670|GO:0050097 KEGG: 00630+5.4.99.1|KEGG: 00660+5.4.99.1|MetaCyc: PWY-5087|MetaCyc: PWY-5103|MetaCyc: PWY-6728 RAM_24180 25df03edb5ee4a64aecfdbbd2ab17a95 431 Pfam PF06368 Methylaspartate mutase E chain (MutE) 15 393 1.7E-81 T 13-10-2018 IPR006396 Glutamate mutase epsilon subunit GO:0019670|GO:0050097 KEGG: 00630+5.4.99.1|KEGG: 00660+5.4.99.1|MetaCyc: PWY-5087|MetaCyc: PWY-5103|MetaCyc: PWY-6728 RAM_24180 25df03edb5ee4a64aecfdbbd2ab17a95 431 SUPERFAMILY SSF51703 7 411 6.2E-105 T 13-10-2018 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 RAM_29785 a4b1716729c5d3571add1885caa947b6 198 TIGRFAM TIGR02548 casB_cse2: CRISPR type I-E/ECOLI-associated protein CasB/Cse2 35 175 3.5E-24 T 13-10-2018 IPR013382 CRISPR-associated protein Cse2 RAM_29785 a4b1716729c5d3571add1885caa947b6 198 Pfam PF09485 CRISPR-associated protein Cse2 (CRISPR_cse2) 38 174 3.7E-29 T 13-10-2018 IPR013382 CRISPR-associated protein Cse2 RAM_29785 a4b1716729c5d3571add1885caa947b6 198 Gene3D G3DSA:1.10.520.40 21 187 1.6E-33 T 13-10-2018 IPR038287 Cse2 superfamily RAM_36925 1089a516b261e131d433bb4884d1112e 141 Gene3D G3DSA:2.30.110.10 2 133 2.1E-21 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_36925 1089a516b261e131d433bb4884d1112e 141 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 8 91 4.9E-15 T 13-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RAM_36925 1089a516b261e131d433bb4884d1112e 141 SUPERFAMILY SSF50475 6 131 8.04E-24 T 13-10-2018 RAM_25005 0a9a1bdba3677d5975dc878842337145 311 Pfam PF13614 AAA domain 1 178 3.2E-33 T 13-10-2018 IPR025669 AAA domain RAM_25005 0a9a1bdba3677d5975dc878842337145 311 SUPERFAMILY SSF52540 1 261 6.3E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_25005 0a9a1bdba3677d5975dc878842337145 311 Gene3D G3DSA:3.40.50.300 1 265 6.5E-53 T 13-10-2018 RAM_35215 a887f63988da0f1d9b16ddf8afb3e308 150 SUPERFAMILY SSF54637 5 140 1.84E-23 T 13-10-2018 IPR029069 HotDog domain superfamily RAM_35215 a887f63988da0f1d9b16ddf8afb3e308 150 Pfam PF13279 Thioesterase-like superfamily 11 136 8.3E-8 T 13-10-2018 RAM_35215 a887f63988da0f1d9b16ddf8afb3e308 150 Gene3D G3DSA:3.10.129.10 1 150 1.6E-38 T 13-10-2018 RAM_03295 7f3adcf6ff2ee1ec258d523da11d204f 473 Gene3D G3DSA:3.90.79.40 79 241 2.3E-63 T 13-10-2018 IPR038153 NDP-hexose 2,3-dehydratase-like superfamily KEGG: 00523+4.2.1.159 RAM_03295 7f3adcf6ff2ee1ec258d523da11d204f 473 Gene3D G3DSA:3.90.79.40 312 473 2.8E-50 T 13-10-2018 IPR038153 NDP-hexose 2,3-dehydratase-like superfamily KEGG: 00523+4.2.1.159 RAM_03295 7f3adcf6ff2ee1ec258d523da11d204f 473 Pfam PF03559 NDP-hexose 2,3-dehydratase 267 469 2.0E-71 T 13-10-2018 IPR005212 NDP-hexose 2,3-dehydratase KEGG: 00523+4.2.1.159 RAM_03295 7f3adcf6ff2ee1ec258d523da11d204f 473 Pfam PF03559 NDP-hexose 2,3-dehydratase 28 230 8.4E-86 T 13-10-2018 IPR005212 NDP-hexose 2,3-dehydratase KEGG: 00523+4.2.1.159 RAM_32980 81fc9c880cf882d2118f57b219ea1f9c 601 Pfam PF13245 AAA domain 2 126 5.5E-7 T 13-10-2018 RAM_32980 81fc9c880cf882d2118f57b219ea1f9c 601 SUPERFAMILY SSF52540 2 313 7.94E-26 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_32980 81fc9c880cf882d2118f57b219ea1f9c 601 Gene3D G3DSA:3.40.50.300 1 147 3.5E-13 T 13-10-2018 RAM_11565 e05f3dbf9224765f1b2b84d2544562ef 145 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 70 81 1.3E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_11565 e05f3dbf9224765f1b2b84d2544562ef 145 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 141 145 1.3E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_11565 e05f3dbf9224765f1b2b84d2544562ef 145 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 2 19 1.3E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_11565 e05f3dbf9224765f1b2b84d2544562ef 145 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 115 131 1.3E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_11565 e05f3dbf9224765f1b2b84d2544562ef 145 Gene3D G3DSA:3.40.50.720 3 145 9.1E-37 T 13-10-2018 RAM_11565 e05f3dbf9224765f1b2b84d2544562ef 145 SUPERFAMILY SSF51735 3 145 1.42E-36 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_11565 e05f3dbf9224765f1b2b84d2544562ef 145 Pfam PF00106 short chain dehydrogenase 3 144 1.8E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_02700 b5c51b96e26cff9d908a55a96f817d44 449 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 27 361 24.481 T 13-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_02700 b5c51b96e26cff9d908a55a96f817d44 449 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 236 249 - T 13-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_02700 b5c51b96e26cff9d908a55a96f817d44 449 Pfam PF00146 NADH dehydrogenase 35 354 4.3E-124 T 13-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RAM_46755 37add5a53e6ad496d38a39148bf26a9b 173 Pfam PF10118 Predicted metal-dependent hydrolase 19 153 1.0E-40 T 13-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 RAM_36545 be636d870e908d649fdd305656f3ef58 203 SUPERFAMILY SSF55729 108 184 9.51E-8 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_36545 be636d870e908d649fdd305656f3ef58 203 Gene3D G3DSA:3.40.630.30 77 186 1.7E-6 T 13-10-2018 RAM_44910 349f1c1d3d7285a02d202ef8dae7f93b 183 TIGRFAM TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase 9 176 8.4E-67 T 13-10-2018 IPR005904 Hypoxanthine phosphoribosyl transferase GO:0004422|GO:0005737|GO:0006166 KEGG: 00230+2.4.2.8|KEGG: 00983+2.4.2.8|MetaCyc: PWY-6599|MetaCyc: PWY-6609|MetaCyc: PWY-6610|MetaCyc: PWY-6620 RAM_44910 349f1c1d3d7285a02d202ef8dae7f93b 183 SUPERFAMILY SSF53271 5 181 5.77E-53 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like RAM_44910 349f1c1d3d7285a02d202ef8dae7f93b 183 Pfam PF00156 Phosphoribosyl transferase domain 11 163 8.4E-23 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 RAM_44910 349f1c1d3d7285a02d202ef8dae7f93b 183 Gene3D G3DSA:3.40.50.2020 1 182 2.2E-65 T 13-10-2018 RAM_23670 605f56ef6b35e6981e7cea685eca95a7 214 SUPERFAMILY SSF53335 24 208 1.12E-29 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_23670 605f56ef6b35e6981e7cea685eca95a7 214 Pfam PF13649 Methyltransferase domain 67 157 4.8E-9 T 13-10-2018 RAM_23670 605f56ef6b35e6981e7cea685eca95a7 214 Gene3D G3DSA:3.40.50.150 22 208 6.0E-31 T 13-10-2018 RAM_29090 5dd39939f9a750dd5646b12def476f9d 108 SUPERFAMILY SSF54909 1 93 7.15E-15 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_29090 5dd39939f9a750dd5646b12def476f9d 108 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 74 3.8E-10 T 13-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain RAM_29090 5dd39939f9a750dd5646b12def476f9d 108 Gene3D G3DSA:3.30.70.100 1 97 1.2E-10 T 13-10-2018 RAM_33955 76830a1ff3f8738d7db9bdcec44cc5bc 151 Pfam PF10825 Protein of unknown function (DUF2752) 54 100 9.3E-19 T 13-10-2018 IPR021215 Protein of unknown function DUF2752 RAM_29485 47c4521abed7abf659f0c5f5fc391f9a 211 SUPERFAMILY SSF52218 41 186 6.68E-9 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RAM_29485 47c4521abed7abf659f0c5f5fc391f9a 211 Pfam PF12682 Flavodoxin 65 206 7.9E-15 T 13-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 RAM_29485 47c4521abed7abf659f0c5f5fc391f9a 211 Gene3D G3DSA:3.40.50.360 32 210 4.7E-37 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RAM_45170 142b289b7fe824773c4abad3a9d90079 238 Pfam PF00482 Type II secretion system (T2SS), protein F 101 221 6.2E-17 T 13-10-2018 IPR018076 Type II secretion system F domain RAM_26705 beec006b746a8efc6831fd2d3e406af8 186 Gene3D G3DSA:2.30.110.10 1 154 3.3E-30 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_26705 beec006b746a8efc6831fd2d3e406af8 186 Pfam PF01613 Flavin reductase like domain 15 154 3.7E-8 T 13-10-2018 IPR002563 Flavin reductase like domain GO:0010181 RAM_26705 beec006b746a8efc6831fd2d3e406af8 186 SUPERFAMILY SSF50475 11 159 7.85E-23 T 13-10-2018 RAM_43880 432238ae9cd86e3aedb15a3cf039e88d 253 Pfam PF14062 Domain of unknown function (DUF4253) 145 252 8.1E-29 T 13-10-2018 IPR025349 Domain of unknown function DUF4253 RAM_09105 521e66e8d0eb219c28f62bab7cb5eefc 201 Pfam PF02620 Uncharacterized ACR, COG1399 77 186 1.4E-27 T 13-10-2018 IPR003772 Large ribosomal RNA subunit accumulation protein YceD RAM_31515 97a7ea562fc143d5b2b3ed896dd7072c 466 Gene3D G3DSA:1.10.443.10 244 456 4.3E-22 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 RAM_31515 97a7ea562fc143d5b2b3ed896dd7072c 466 Pfam PF00589 Phage integrase family 263 442 2.0E-5 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RAM_31515 97a7ea562fc143d5b2b3ed896dd7072c 466 SUPERFAMILY SSF56349 141 444 2.94E-25 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RAM_12780 b80cc23b9b2fb050b50fd2d9a9e350ed 182 Pfam PF17197 Domain of unknown function (DUF5134) 34 179 7.5E-28 T 13-10-2018 IPR033458 Protein of unknown function DUF5134 RAM_02385 ffdd15303918a86b66e4b9464591b283 272 Gene3D G3DSA:3.10.129.90 4 268 2.6E-72 T 13-10-2018 RAM_02385 ffdd15303918a86b66e4b9464591b283 272 SUPERFAMILY SSF54637 128 266 7.47E-11 T 13-10-2018 IPR029069 HotDog domain superfamily RAM_02385 ffdd15303918a86b66e4b9464591b283 272 Pfam PF13622 Thioesterase-like superfamily 27 266 3.0E-43 T 13-10-2018 RAM_02385 ffdd15303918a86b66e4b9464591b283 272 SUPERFAMILY SSF54637 7 112 2.63E-9 T 13-10-2018 IPR029069 HotDog domain superfamily RAM_16110 28b97b943a53d258bf79644c20dbe9bb 229 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_16110 28b97b943a53d258bf79644c20dbe9bb 229 SMART SM00382 33 221 4.0E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_16110 28b97b943a53d258bf79644c20dbe9bb 229 Gene3D G3DSA:3.40.50.300 8 228 4.1E-61 T 13-10-2018 RAM_16110 28b97b943a53d258bf79644c20dbe9bb 229 SUPERFAMILY SSF52540 11 224 3.25E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_16110 28b97b943a53d258bf79644c20dbe9bb 229 Pfam PF00005 ABC transporter 24 172 4.3E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_05970 cadce145f4dae175ccdcb4cb4f4717a7 413 PRINTS PR00758 Arsenical pump membrane protein signature 106 130 1.4E-13 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 RAM_05970 cadce145f4dae175ccdcb4cb4f4717a7 413 PRINTS PR00758 Arsenical pump membrane protein signature 351 376 1.4E-13 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 RAM_05970 cadce145f4dae175ccdcb4cb4f4717a7 413 PRINTS PR00758 Arsenical pump membrane protein signature 179 202 1.4E-13 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 RAM_05970 cadce145f4dae175ccdcb4cb4f4717a7 413 Pfam PF02040 Arsenical pump membrane protein 16 377 6.1E-26 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 RAM_16925 16c5ac5e36dbeb6ccd979b983161447e 280 Pfam PF05721 Phytanoyl-CoA dioxygenase (PhyH) 26 219 2.4E-9 T 13-10-2018 IPR008775 Phytanoyl-CoA dioxygenase RAM_16925 16c5ac5e36dbeb6ccd979b983161447e 280 Gene3D G3DSA:2.60.120.620 5 268 1.0E-31 T 13-10-2018 RAM_16925 16c5ac5e36dbeb6ccd979b983161447e 280 SUPERFAMILY SSF51197 19 250 1.25E-29 T 13-10-2018 RAM_04385 f4c07755488a06e997bb087daf041856 126 SUPERFAMILY SSF53927 2 125 4.28E-37 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 RAM_04385 f4c07755488a06e997bb087daf041856 126 Gene3D G3DSA:3.40.140.10 1 125 7.6E-44 T 13-10-2018 RAM_04385 f4c07755488a06e997bb087daf041856 126 Pfam PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region 4 54 5.8E-10 T 13-10-2018 IPR013171 Cytidine/deoxycytidylate deaminase, zinc-binding domain GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 RAM_22795 5c8eaa9e7a57affdf417dd21fdff942f 124 Pfam PF14325 Domain of unknown function (DUF4383) 3 113 1.6E-14 T 13-10-2018 IPR025492 Protein of unknown function DUF4383 RAM_08285 0fab96d857b9541773088a4131a6074e 251 Gene3D G3DSA:2.160.10.10 55 233 1.9E-34 T 13-10-2018 RAM_08285 0fab96d857b9541773088a4131a6074e 251 SUPERFAMILY SSF51161 36 224 5.54E-33 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily RAM_08285 0fab96d857b9541773088a4131a6074e 251 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 166 200 1.2E-6 T 13-10-2018 IPR001451 Hexapeptide repeat RAM_42180 fbbae52dc3d04d6e393189ae6bde9e97 262 Pfam PF13490 Putative zinc-finger 7 37 6.5E-6 T 13-10-2018 IPR027383 Putative zinc-finger RAM_42180 fbbae52dc3d04d6e393189ae6bde9e97 262 Gene3D G3DSA:1.10.10.1320 2 63 3.5E-5 T 13-10-2018 RAM_22935 5eca4550a490ddb14c4706b625efdebc 575 SUPERFAMILY SSF55729 49 194 1.86E-11 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_22935 5eca4550a490ddb14c4706b625efdebc 575 Gene3D G3DSA:3.40.50.720 332 492 1.0E-18 T 13-10-2018 RAM_22935 5eca4550a490ddb14c4706b625efdebc 575 SUPERFAMILY SSF69572 342 476 7.98E-15 T 13-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 RAM_22935 5eca4550a490ddb14c4706b625efdebc 575 Pfam PF00899 ThiF family 347 476 7.7E-9 T 13-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 RAM_22935 5eca4550a490ddb14c4706b625efdebc 575 Gene3D G3DSA:3.40.630.30 17 219 2.8E-9 T 13-10-2018 RAM_11195 527d4a5907e6df3f5eb211a1f7f45b8e 136 SUPERFAMILY SSF52172 5 130 8.54E-9 T 13-10-2018 IPR011006 CheY-like superfamily RAM_11195 527d4a5907e6df3f5eb211a1f7f45b8e 136 Gene3D G3DSA:3.40.50.2300 1 131 2.8E-8 T 13-10-2018 RAM_02975 9d68af1d9560f46d469702706b51d9e7 276 Gene3D G3DSA:3.40.50.150 16 273 5.6E-33 T 13-10-2018 RAM_02975 9d68af1d9560f46d469702706b51d9e7 276 SUPERFAMILY SSF53335 34 256 1.84E-34 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_02975 9d68af1d9560f46d469702706b51d9e7 276 Pfam PF08241 Methyltransferase domain 62 157 2.0E-21 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 RAM_39340 6313e968495a0af6c99d294cc580a38f 495 Pfam PF00561 alpha/beta hydrolase fold 81 451 1.1E-30 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_39340 6313e968495a0af6c99d294cc580a38f 495 SUPERFAMILY SSF53474 70 453 7.16E-24 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_42420 7659bfa6c8f4184d81ebc76d94f23f17 522 Pfam PF16192 C-terminal four TMM region of protein-O-mannosyltransferase 339 521 1.7E-15 T 13-10-2018 IPR032421 Protein O-mannosyl-transferase, C-terminal four TM domain KEGG: 00514+2.4.1.109|KEGG: 00515+2.4.1.109|MetaCyc: PWY-7921|MetaCyc: PWY-7922|MetaCyc: PWY-7979|Reactome: R-HSA-5173105 RAM_42420 7659bfa6c8f4184d81ebc76d94f23f17 522 Pfam PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase 120 254 7.5E-12 T 13-10-2018 IPR003342 Glycosyl transferase family 39/83 GO:0000030|GO:0006493|GO:0016020 Reactome: R-HSA-5173105 RAM_23075 efc38457babfd719698b5449b4694845 221 Pfam PF07510 Protein of unknown function (DUF1524) 117 215 2.8E-7 T 13-10-2018 IPR011089 Domain of unknown function DUF1524 RAM_05475 5fa5fe67dc84c6a6d899cc0b1744fc1c 130 Pfam PF13828 Domain of unknown function (DUF4190) 54 113 3.8E-14 T 13-10-2018 IPR025241 Domain of unknown function DUF4190 RAM_39065 2c590babbb49eba552ec6605c31bf78d 410 Gene3D G3DSA:1.10.10.2840 275 407 7.7E-18 T 13-10-2018 RAM_39065 2c590babbb49eba552ec6605c31bf78d 410 Pfam PF13556 PucR C-terminal helix-turn-helix domain 344 402 3.2E-13 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain RAM_45180 2775552ad6f9eadf2eb40a1a4cc9deee 383 Gene3D G3DSA:3.30.450.380 29 153 2.4E-18 T 13-10-2018 RAM_45180 2775552ad6f9eadf2eb40a1a4cc9deee 383 Gene3D G3DSA:3.40.50.300 154 357 7.4E-54 T 13-10-2018 RAM_45180 2775552ad6f9eadf2eb40a1a4cc9deee 383 TIGRFAM TIGR03819 heli_sec_ATPase: helicase/secretion neighborhood ATPase 6 349 1.2E-143 T 13-10-2018 IPR022399 Helicase/secretion neighbourhood ATPase RAM_45180 2775552ad6f9eadf2eb40a1a4cc9deee 383 SUPERFAMILY SSF52540 47 343 5.52E-43 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_45180 2775552ad6f9eadf2eb40a1a4cc9deee 383 Pfam PF00437 Type II/IV secretion system protein 57 337 1.5E-64 T 13-10-2018 IPR001482 Type II/IV secretion system protein RAM_02765 ecfa53ab462ffd29bbffe1b34a5c1d40 106 Gene3D G3DSA:3.10.180.10 1 105 5.1E-24 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_02765 ecfa53ab462ffd29bbffe1b34a5c1d40 106 SUPERFAMILY SSF54593 5 104 6.74E-16 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_30260 1e7c656a3dfecd89a6c57916a529f0cb 207 Gene3D G3DSA:1.10.357.10 21 202 4.6E-13 T 13-10-2018 RAM_30260 1e7c656a3dfecd89a6c57916a529f0cb 207 SUPERFAMILY SSF46689 19 96 2.36E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_25070 7c17c4e8da639382d8f944d355b2c99f 457 Pfam PF00144 Beta-lactamase 4 331 2.2E-58 T 13-10-2018 IPR001466 Beta-lactamase-related RAM_25070 7c17c4e8da639382d8f944d355b2c99f 457 Gene3D G3DSA:3.40.710.10 2 336 8.0E-76 T 13-10-2018 RAM_25070 7c17c4e8da639382d8f944d355b2c99f 457 SUPERFAMILY SSF56601 3 336 1.37E-70 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_39780 5250513e182869cdca3a3ac7b42a91b5 141 Gene3D G3DSA:3.40.140.10 4 120 8.1E-28 T 13-10-2018 RAM_39780 5250513e182869cdca3a3ac7b42a91b5 141 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 4 104 1.1E-15 T 13-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain RAM_39780 5250513e182869cdca3a3ac7b42a91b5 141 SUPERFAMILY SSF53927 4 140 3.18E-31 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 RAM_40120 d7d9f9d93b0af6aa8951ab8983d87aaa 121 SUPERFAMILY SSF54427 1 119 1.81E-16 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_40120 d7d9f9d93b0af6aa8951ab8983d87aaa 121 Pfam PF13474 SnoaL-like domain 11 119 2.3E-5 T 13-10-2018 IPR037401 SnoaL-like domain RAM_40120 d7d9f9d93b0af6aa8951ab8983d87aaa 121 Gene3D G3DSA:3.10.450.50 2 120 9.5E-15 T 13-10-2018 RAM_10045 b5040a544dd1e6a2a3d728dadff729d0 206 Pfam PF03551 Transcriptional regulator PadR-like family 60 128 6.3E-21 T 13-10-2018 IPR005149 Transcription regulator PadR, N-terminal RAM_10045 b5040a544dd1e6a2a3d728dadff729d0 206 SUPERFAMILY SSF46785 56 183 5.01E-27 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_10045 b5040a544dd1e6a2a3d728dadff729d0 206 Gene3D G3DSA:1.10.10.10 48 147 7.8E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_42970 8d7e81a3ee421667a972552a4321bd41 207 Pfam PF10067 Predicted membrane protein (DUF2306) 43 195 4.4E-31 T 13-10-2018 IPR018750 Protein of unknown function DUF2306, membrane RAM_07535 362b971cf1495c39366c4dbcf8910048 199 SUPERFAMILY SSF56524 17 197 3.27E-56 T 13-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 RAM_07535 362b971cf1495c39366c4dbcf8910048 199 Gene3D G3DSA:3.90.420.10 27 198 1.1E-41 T 13-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 RAM_07535 362b971cf1495c39366c4dbcf8910048 199 Pfam PF00174 Oxidoreductase molybdopterin binding domain 35 179 1.1E-31 T 13-10-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 RAM_39890 445ad37f093e5eac267e3f0d47d921d4 208 PIRSF PIRSF006324 1 208 3.8E-53 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RAM_39890 445ad37f093e5eac267e3f0d47d921d4 208 Pfam PF01810 LysE type translocator 14 208 1.8E-38 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RAM_33760 cfd6bbd92e57d94b4ec0901935618863 145 Pfam PF00571 CBS domain 95 140 1.7E-5 T 13-10-2018 IPR000644 CBS domain RAM_33760 cfd6bbd92e57d94b4ec0901935618863 145 SMART SM00116 6 54 34.0 T 13-10-2018 IPR000644 CBS domain RAM_33760 cfd6bbd92e57d94b4ec0901935618863 145 SMART SM00116 95 142 0.18 T 13-10-2018 IPR000644 CBS domain RAM_33760 cfd6bbd92e57d94b4ec0901935618863 145 Gene3D G3DSA:3.10.580.10 1 145 1.5E-56 T 13-10-2018 RAM_33760 cfd6bbd92e57d94b4ec0901935618863 145 SUPERFAMILY SSF54631 3 140 8.59E-13 T 13-10-2018 RAM_11495 a7dc38e0e5b6ebf4443cbfe899aac35d 346 Pfam PF06441 Epoxide hydrolase N terminus 3 95 2.4E-16 T 13-10-2018 IPR010497 Epoxide hydrolase, N-terminal Reactome: R-HSA-211945 RAM_11495 a7dc38e0e5b6ebf4443cbfe899aac35d 346 Gene3D G3DSA:3.40.50.1820 2 344 2.5E-99 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_11495 a7dc38e0e5b6ebf4443cbfe899aac35d 346 PRINTS PR00412 Epoxide hydrolase signature 163 176 7.0E-6 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_11495 a7dc38e0e5b6ebf4443cbfe899aac35d 346 PRINTS PR00412 Epoxide hydrolase signature 86 104 7.0E-6 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_11495 a7dc38e0e5b6ebf4443cbfe899aac35d 346 PRINTS PR00412 Epoxide hydrolase signature 319 341 7.0E-6 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_11495 a7dc38e0e5b6ebf4443cbfe899aac35d 346 PIRSF PIRSF001112 2 344 6.2E-62 T 13-10-2018 IPR016292 Epoxide hydrolase GO:0033961 Reactome: R-HSA-211945 RAM_11495 a7dc38e0e5b6ebf4443cbfe899aac35d 346 SUPERFAMILY SSF53474 3 342 1.57E-75 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_09555 b4699c7c18ef152019d6055367f813d9 298 SUPERFAMILY SSF51569 33 293 1.03E-29 T 13-10-2018 RAM_09555 b4699c7c18ef152019d6055367f813d9 298 Gene3D G3DSA:3.20.20.70 1 297 3.9E-78 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_10270 fc0accdaaf795152c75a27ef3700b87a 259 Pfam PF06966 Protein of unknown function (DUF1295) 19 249 1.0E-51 T 13-10-2018 IPR010721 Protein of unknown function DUF1295 RAM_10270 fc0accdaaf795152c75a27ef3700b87a 259 Gene3D G3DSA:1.20.120.1630 87 255 1.1E-9 T 13-10-2018 RAM_31290 9be90619add7221c25065ff1a2f6558e 218 SMART SM00953 54 190 2.5E-6 T 13-10-2018 IPR014914 RES domain RAM_31290 9be90619add7221c25065ff1a2f6558e 218 Pfam PF08808 RES domain 32 197 1.0E-21 T 13-10-2018 IPR014914 RES domain RAM_46800 55447c07e02ee466917410acb5154fd1 90 SUPERFAMILY SSF143120 2 42 4.84E-5 T 13-10-2018 IPR036165 YefM-like superfamily RAM_46800 55447c07e02ee466917410acb5154fd1 90 Gene3D G3DSA:3.40.1620.10 1 43 8.3E-6 T 13-10-2018 RAM_46800 55447c07e02ee466917410acb5154fd1 90 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 4 42 1.6E-8 T 13-10-2018 RAM_39400 ab65d29a962526882258c72641c9eaaa 137 Pfam PF09350 Domain of unknown function (DUF1992) 14 83 4.0E-15 T 13-10-2018 IPR018961 DnaJ homologue, subfamily C, member 28, conserved domain RAM_07170 12958596ebb4d34038ecd7d385c03dfd 344 Pfam PF12721 RIP homotypic interaction motif 91 108 0.068 T 13-10-2018 IPR025735 RHIM domain Reactome: R-HSA-168927|Reactome: R-HSA-1810476|Reactome: R-HSA-2562578|Reactome: R-HSA-9013957|Reactome: R-HSA-937041 RAM_07170 12958596ebb4d34038ecd7d385c03dfd 344 Pfam PF12721 RIP homotypic interaction motif 133 163 0.16 T 13-10-2018 IPR025735 RHIM domain Reactome: R-HSA-168927|Reactome: R-HSA-1810476|Reactome: R-HSA-2562578|Reactome: R-HSA-9013957|Reactome: R-HSA-937041 RAM_22125 eb64d29cd5fc7eadce0e3565ba3644ea 312 Gene3D G3DSA:1.10.3720.10 68 308 2.2E-71 T 13-10-2018 IPR035906 MetI-like superfamily RAM_22125 eb64d29cd5fc7eadce0e3565ba3644ea 312 SUPERFAMILY SSF161098 73 297 2.09E-62 T 13-10-2018 IPR035906 MetI-like superfamily RAM_22125 eb64d29cd5fc7eadce0e3565ba3644ea 312 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 104 300 1.4E-19 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_45975 daeb1c481844c9d83b0a9a795456c2bc 160 TIGRFAM TIGR03941 tRNA_deam_assoc: putative tRNA adenosine deaminase-associated protein 9 155 4.4E-53 T 13-10-2018 IPR023869 tRNA adenosine deaminase-associated protein, putative RAM_47890 1b7228635984e76b513d628e2d4d33bf 448 SUPERFAMILY SSF160424 32 110 3.66E-17 T 13-10-2018 IPR036170 Probable antitoxin YezG superfamily RAM_47890 1b7228635984e76b513d628e2d4d33bf 448 Pfam PF14021 Tuberculosis necrotizing toxin 363 447 3.9E-15 T 13-10-2018 IPR025331 Tuberculosis necrotizing toxin KEGG: 00760+3.2.2.5 RAM_21290 4878d06fa3345717802eb66addbb6323 91 Pfam PF00550 Phosphopantetheine attachment site 11 74 4.8E-11 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RAM_21290 4878d06fa3345717802eb66addbb6323 91 Gene3D G3DSA:1.10.1200.10 6 90 1.9E-12 T 13-10-2018 IPR036736 ACP-like superfamily RAM_21290 4878d06fa3345717802eb66addbb6323 91 SUPERFAMILY SSF47336 3 83 1.09E-13 T 13-10-2018 IPR036736 ACP-like superfamily RAM_16315 dc5aede374123909c67b03535fb95998 140 SUPERFAMILY SSF109854 2 135 9.01E-35 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_16315 dc5aede374123909c67b03535fb95998 140 Gene3D G3DSA:1.20.120.450 1 139 9.1E-27 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_16315 dc5aede374123909c67b03535fb95998 140 Pfam PF04978 Protein of unknown function (DUF664) 2 136 2.4E-39 T 13-10-2018 IPR007061 Protein of unknown function DUF664 RAM_34155 34a4400ffa6e5e2426c067684ba24244 52 SUPERFAMILY SSF57829 7 38 5.49E-6 T 13-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 RAM_34155 34a4400ffa6e5e2426c067684ba24244 52 Gene3D G3DSA:2.20.25.30 1 42 5.0E-5 T 13-10-2018 IPR011331 Ribosomal protein L37ae/L37e GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAM_20745 b6626632e5cb4c2b0b7ba8b3f0a721c0 243 Pfam PF01209 ubiE/COQ5 methyltransferase family 46 222 8.5E-21 T 13-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 RAM_20745 b6626632e5cb4c2b0b7ba8b3f0a721c0 243 Gene3D G3DSA:3.40.50.150 19 235 5.4E-37 T 13-10-2018 RAM_20745 b6626632e5cb4c2b0b7ba8b3f0a721c0 243 SUPERFAMILY SSF53335 14 226 1.86E-39 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_05195 15fc044e874ebace743928f9fbedbc64 181 Pfam PF00293 NUDIX domain 47 162 1.0E-9 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RAM_05195 15fc044e874ebace743928f9fbedbc64 181 Gene3D G3DSA:3.90.79.10 4 176 3.2E-34 T 13-10-2018 RAM_05195 15fc044e874ebace743928f9fbedbc64 181 SUPERFAMILY SSF55811 28 162 2.71E-19 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RAM_33010 8dd45b6d96c1e027ab00b2dce3556c83 320 Gene3D G3DSA:3.40.50.720 1 180 1.8E-14 T 13-10-2018 RAM_33010 8dd45b6d96c1e027ab00b2dce3556c83 320 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 107 1.0E-7 T 13-10-2018 IPR013332 Ketopantoate reductase, N-terminal domain RAM_33010 8dd45b6d96c1e027ab00b2dce3556c83 320 SUPERFAMILY SSF51735 2 119 9.5E-6 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_09920 a6493e7910772d4da675f2f19ec1a3bd 241 Pfam PF02517 CAAX protease self-immunity 144 231 1.1E-11 T 13-10-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 RAM_16785 e6a641c4e4663f06a52852c80ca1f248 393 Pfam PF09995 Uncharacterized protein conserved in bacteria (DUF2236) 114 335 4.0E-19 T 13-10-2018 IPR018713 Domain of unknown function DUF2236 RAM_15045 ba42c6de453a5536c5eb62e284d7410d 91 Pfam PF02325 YGGT family 7 87 1.6E-13 T 13-10-2018 IPR003425 CCB3/YggT GO:0016020 RAM_23575 391cdf6dd93bebe44171397b59bd3559 192 Gene3D G3DSA:1.10.10.10 1 84 8.2E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_23575 391cdf6dd93bebe44171397b59bd3559 192 Pfam PF12840 Helix-turn-helix domain 9 65 1.7E-14 T 13-10-2018 RAM_23575 391cdf6dd93bebe44171397b59bd3559 192 SUPERFAMILY SSF46785 4 102 1.66E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_22770 2ba162c086b3e726b177cdc821ca99ca 546 Gene3D G3DSA:1.10.10.2840 411 542 3.3E-19 T 13-10-2018 RAM_22770 2ba162c086b3e726b177cdc821ca99ca 546 Pfam PF13556 PucR C-terminal helix-turn-helix domain 482 540 4.3E-20 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain RAM_27750 7a0b6490737d612662c199bef526dd0e 288 SUPERFAMILY SSF51679 1 273 1.91E-52 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_27750 7a0b6490737d612662c199bef526dd0e 288 Gene3D G3DSA:3.20.20.30 5 277 9.1E-54 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_27750 7a0b6490737d612662c199bef526dd0e 288 Pfam PF00296 Luciferase-like monooxygenase 15 232 5.0E-44 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_04735 dfa56d882e4b153e6a01bc968ac51cf5 297 SUPERFAMILY SSF51735 1 287 1.02E-41 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_04735 dfa56d882e4b153e6a01bc968ac51cf5 297 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 74 3.1E-11 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 RAM_04735 dfa56d882e4b153e6a01bc968ac51cf5 297 Gene3D G3DSA:3.40.50.720 1 274 3.5E-37 T 13-10-2018 RAM_09970 323d6cfe8836cf5f14bfbba80f4efe97 107 Pfam PF10611 Protein of unknown function (DUF2469) 1 100 1.8E-53 T 13-10-2018 IPR019592 Protein of unknown function DUF2469 RAM_04950 3b4d8586b47a5a2a3d1dc0d62be2768e 342 Pfam PF00877 NlpC/P60 family 232 330 3.5E-22 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain RAM_04950 3b4d8586b47a5a2a3d1dc0d62be2768e 342 Gene3D G3DSA:3.90.1720.10 202 334 1.9E-37 T 13-10-2018 RAM_04950 3b4d8586b47a5a2a3d1dc0d62be2768e 342 SUPERFAMILY SSF54001 222 330 1.47E-31 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily RAM_22865 2b1bc8106a3b826ff17cd5c90fc15442 233 Pfam PF06197 Protein of unknown function (DUF998) 25 212 2.7E-19 T 13-10-2018 IPR009339 Protein of unknown function DUF998 RAM_02090 2656a9daf5f25b54a3247644b992af66 183 Pfam PF11706 CGNR zinc finger 137 178 1.1E-15 T 13-10-2018 IPR021005 Zinc finger, CGNR RAM_02090 2656a9daf5f25b54a3247644b992af66 183 Gene3D G3DSA:1.10.3300.10 5 180 5.9E-25 T 13-10-2018 IPR023286 ABATE domain superfamily RAM_02090 2656a9daf5f25b54a3247644b992af66 183 SUPERFAMILY SSF160904 3 178 6.15E-38 T 13-10-2018 RAM_02090 2656a9daf5f25b54a3247644b992af66 183 Pfam PF07336 Putative stress-induced transcription regulator 8 133 3.0E-18 T 13-10-2018 IPR010852 Putative stress-induced transcription regulator RAM_42540 434e9f338bd34ec9d99dd9822ab518a4 281 SUPERFAMILY SSF51735 4 272 1.21E-50 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_42540 434e9f338bd34ec9d99dd9822ab518a4 281 Pfam PF13460 NAD(P)H-binding 12 181 7.3E-17 T 13-10-2018 IPR016040 NAD(P)-binding domain RAM_42540 434e9f338bd34ec9d99dd9822ab518a4 281 Gene3D G3DSA:3.40.50.720 8 281 5.2E-61 T 13-10-2018 RAM_01590 65ff20435af8c2ad6ecf063040148323 280 Pfam PF04672 S-adenosyl methyltransferase 16 280 3.9E-75 T 13-10-2018 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type RAM_01590 65ff20435af8c2ad6ecf063040148323 280 PIRSF PIRSF017393 3 280 4.0E-75 T 13-10-2018 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type RAM_01590 65ff20435af8c2ad6ecf063040148323 280 SUPERFAMILY SSF53335 12 260 1.06E-42 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_01590 65ff20435af8c2ad6ecf063040148323 280 Gene3D G3DSA:3.40.50.150 2 280 1.6E-88 T 13-10-2018 RAM_12680 b81b2f0af8e9d5600baa31bf0af03294 187 Gene3D G3DSA:3.40.50.300 1 179 3.2E-18 T 13-10-2018 RAM_12680 b81b2f0af8e9d5600baa31bf0af03294 187 SUPERFAMILY SSF52540 1 163 1.48E-21 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_12680 b81b2f0af8e9d5600baa31bf0af03294 187 Pfam PF03029 Conserved hypothetical ATP binding protein 8 175 7.3E-27 T 13-10-2018 IPR004130 GPN-loop GTPase RAM_46285 170f9cb6b6a45d3f6088b45c6414dfde 62 Pfam PF11273 Protein of unknown function (DUF3073) 2 61 9.0E-25 T 13-10-2018 IPR021426 Protein of unknown function DUF3073 RAM_02935 0cd1752578fb4b5e963dee04bd28f283 283 Gene3D G3DSA:3.30.2010.10 58 150 2.6E-27 T 13-10-2018 RAM_02935 0cd1752578fb4b5e963dee04bd28f283 283 Pfam PF01435 Peptidase family M48 68 278 6.3E-36 T 13-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 RAM_02935 0cd1752578fb4b5e963dee04bd28f283 283 Hamap MF_00188 Protease HtpX [htpX]. 7 278 26.929 T 13-10-2018 IPR022919 Peptidase M48, protease HtpX, putative GO:0004222 RAM_33025 50c9dd55ed9165ec6e1591af61022926 161 Gene3D G3DSA:2.60.20.10 65 161 1.7E-5 T 13-10-2018 RAM_21515 79783b80ae0314ade26364921c6914c6 94 Gene3D G3DSA:4.10.1210.10 5 94 2.5E-23 T 13-10-2018 IPR036488 Atu1913-like superfamily RAM_21515 79783b80ae0314ade26364921c6914c6 94 Pfam PF08980 Domain of unknown function (DUF1883) 12 93 1.6E-18 T 13-10-2018 IPR015073 Domain of unknown function DUF1883 RAM_21515 79783b80ae0314ade26364921c6914c6 94 SUPERFAMILY SSF141099 10 84 1.7E-18 T 13-10-2018 IPR036488 Atu1913-like superfamily RAM_25550 9a13eb55bf2a5f6da7e16b0149da4179 279 Pfam PF14344 Domain of unknown function (DUF4397) 39 158 1.4E-19 T 13-10-2018 IPR025510 Domain of unknown function DUF4397 RAM_24100 e32f97020fa8f773179a626a7329d139 456 Gene3D G3DSA:3.20.20.70 86 397 1.0E-74 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_24100 e32f97020fa8f773179a626a7329d139 456 SUPERFAMILY SSF102114 148 407 8.63E-12 T 13-10-2018 RAM_38280 bed948c5b8522bde344acaa1263df4d4 120 Gene3D G3DSA:3.30.70.1060 1 116 1.7E-38 T 13-10-2018 RAM_38280 bed948c5b8522bde344acaa1263df4d4 120 Pfam PF03795 YCII-related domain 1 113 1.5E-18 T 13-10-2018 IPR005545 YCII-related RAM_38280 bed948c5b8522bde344acaa1263df4d4 120 SUPERFAMILY SSF54909 1 114 2.32E-29 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_31715 9638acc4d289d5c6b42ea5f3f411eda2 156 SUPERFAMILY SSF50475 24 144 3.93E-24 T 13-10-2018 RAM_31715 9638acc4d289d5c6b42ea5f3f411eda2 156 Gene3D G3DSA:2.30.110.10 20 145 2.2E-25 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_31715 9638acc4d289d5c6b42ea5f3f411eda2 156 TIGRFAM TIGR03618 Rv1155_F420: PPOX class probable F420-dependent enzyme 25 144 9.6E-27 T 13-10-2018 IPR019920 F420-binding domain, putative RAM_31715 9638acc4d289d5c6b42ea5f3f411eda2 156 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 26 108 5.5E-12 T 13-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RAM_16130 b7619155bc48ecab02947468af087102 282 TIGRFAM TIGR03560 F420_Rv1855c: probable F420-dependent oxidoreductase, Rv1855c family 6 229 2.1E-87 T 13-10-2018 IPR019952 F420-dependent oxidoreductase-predicted, Rv1855c RAM_16130 b7619155bc48ecab02947468af087102 282 Gene3D G3DSA:3.20.20.30 4 272 6.6E-67 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_16130 b7619155bc48ecab02947468af087102 282 Pfam PF00296 Luciferase-like monooxygenase 12 250 6.3E-48 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_16130 b7619155bc48ecab02947468af087102 282 SUPERFAMILY SSF51679 4 280 9.42E-65 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_24290 ae680b62614fcbc3c09dbafb3445de1f 409 Gene3D G3DSA:1.20.1250.20 1 395 2.0E-37 T 13-10-2018 RAM_24290 ae680b62614fcbc3c09dbafb3445de1f 409 SUPERFAMILY SSF103473 3 389 1.1E-42 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_24290 ae680b62614fcbc3c09dbafb3445de1f 409 Pfam PF05977 Transmembrane secretion effector 4 387 4.3E-24 T 13-10-2018 IPR010290 Transmembrane secretion effector RAM_33605 e3c74cee45337997a9d762df9aefff62 478 SMART SM00331 256 468 1.5E-10 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_33605 e3c74cee45337997a9d762df9aefff62 478 Gene3D G3DSA:3.60.40.10 252 469 1.6E-30 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_33605 e3c74cee45337997a9d762df9aefff62 478 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 302 467 2.5E-22 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_12090 2fc5f0ba87ffc9a3bde96adb36afe9a5 369 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 2 24 3.2E-14 T 13-10-2018 RAM_12090 2fc5f0ba87ffc9a3bde96adb36afe9a5 369 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 145 160 3.2E-14 T 13-10-2018 RAM_12090 2fc5f0ba87ffc9a3bde96adb36afe9a5 369 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 282 297 3.2E-14 T 13-10-2018 RAM_12090 2fc5f0ba87ffc9a3bde96adb36afe9a5 369 Gene3D G3DSA:3.50.50.60 1 360 1.5E-103 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_12090 2fc5f0ba87ffc9a3bde96adb36afe9a5 369 Pfam PF01494 FAD binding domain 2 319 6.4E-14 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_12090 2fc5f0ba87ffc9a3bde96adb36afe9a5 369 SUPERFAMILY SSF51905 2 357 1.58E-44 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_08485 86207235f682abc52941a8c9b37afe0d 164 SUPERFAMILY SSF55729 1 149 1.45E-28 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_08485 86207235f682abc52941a8c9b37afe0d 164 Gene3D G3DSA:3.40.630.30 2 159 3.5E-29 T 13-10-2018 RAM_08485 86207235f682abc52941a8c9b37afe0d 164 Pfam PF00583 Acetyltransferase (GNAT) family 48 141 1.5E-14 T 13-10-2018 IPR000182 GNAT domain RAM_30490 edf4fc2de793402f8179fcc7913225fa 326 Gene3D G3DSA:2.120.10.30 180 323 6.5E-16 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RAM_30490 edf4fc2de793402f8179fcc7913225fa 326 Pfam PF07676 WD40-like Beta Propeller Repeat 229 244 0.018 T 13-10-2018 IPR011659 WD40-like Beta Propeller RAM_30490 edf4fc2de793402f8179fcc7913225fa 326 SUPERFAMILY SSF69304 81 314 2.62E-14 T 13-10-2018 RAM_22075 bedfd757e7d6df0fc5e924a5b85fff5c 172 SUPERFAMILY SSF46689 1 43 1.95E-5 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_22075 bedfd757e7d6df0fc5e924a5b85fff5c 172 SUPERFAMILY SSF48498 54 161 4.04E-24 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RAM_22075 bedfd757e7d6df0fc5e924a5b85fff5c 172 Gene3D G3DSA:1.10.357.10 1 163 1.2E-39 T 13-10-2018 RAM_27470 239a58f2d9436ab6b516f1041fd1103e 134 SUPERFAMILY SSF55729 14 128 1.42E-17 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_27470 239a58f2d9436ab6b516f1041fd1103e 134 Pfam PF00583 Acetyltransferase (GNAT) family 31 117 1.5E-11 T 13-10-2018 IPR000182 GNAT domain RAM_27470 239a58f2d9436ab6b516f1041fd1103e 134 Gene3D G3DSA:3.40.630.30 1 133 8.5E-24 T 13-10-2018 RAM_36170 fd34d6a64156eb6ae249f50d7f4d7d2e 231 Pfam PF13280 WYL domain 146 206 2.2E-13 T 13-10-2018 IPR026881 WYL domain RAM_36170 fd34d6a64156eb6ae249f50d7f4d7d2e 231 Gene3D G3DSA:1.10.10.10 2 69 1.1E-13 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_36170 fd34d6a64156eb6ae249f50d7f4d7d2e 231 Pfam PF08279 HTH domain 9 65 1.5E-11 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 RAM_36170 fd34d6a64156eb6ae249f50d7f4d7d2e 231 SUPERFAMILY SSF46785 6 66 5.03E-7 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_17645 62521c08a997feada4396c1d56f968b5 252 Pfam PF08241 Methyltransferase domain 37 125 2.3E-15 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 RAM_17645 62521c08a997feada4396c1d56f968b5 252 Gene3D G3DSA:3.40.50.150 4 232 7.7E-35 T 13-10-2018 RAM_17645 62521c08a997feada4396c1d56f968b5 252 SUPERFAMILY SSF53335 4 207 5.11E-31 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_16145 3048f1012986d8b97a13948bb497ee3e 122 Gene3D G3DSA:3.30.450.30 3 122 1.9E-23 T 13-10-2018 RAM_16145 3048f1012986d8b97a13948bb497ee3e 122 Pfam PF03259 Roadblock/LC7 domain 8 95 5.6E-11 T 13-10-2018 IPR004942 Roadblock/LAMTOR2 domain RAM_16145 3048f1012986d8b97a13948bb497ee3e 122 SUPERFAMILY SSF103196 3 120 3.31E-20 T 13-10-2018 RAM_16145 3048f1012986d8b97a13948bb497ee3e 122 SMART SM00960 7 96 2.7E-11 T 13-10-2018 IPR004942 Roadblock/LAMTOR2 domain RAM_06175 9b270e24a92a8a3d8adc71e103763940 518 Pfam PF00561 alpha/beta hydrolase fold 101 491 2.9E-48 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_06175 9b270e24a92a8a3d8adc71e103763940 518 SUPERFAMILY SSF53474 64 491 1.35E-21 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_39135 6e509e3f45de9528fd6cf8edf5553353 338 Pfam PF02470 MlaD protein 39 113 1.5E-14 T 13-10-2018 IPR003399 Mce/MlaD RAM_39135 6e509e3f45de9528fd6cf8edf5553353 338 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 13 295 1.5E-59 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_39700 6451e5c5dca3b322245fb8fd68609839 259 Pfam PF01981 Peptidyl-tRNA hydrolase PTH2 160 250 1.6E-6 T 13-10-2018 IPR002833 Peptidyl-tRNA hydrolase, PTH2 GO:0004045 MetaCyc: PWY-6308 RAM_39700 6451e5c5dca3b322245fb8fd68609839 259 SUPERFAMILY SSF102462 156 252 1.53E-15 T 13-10-2018 IPR023476 Peptidyl-tRNA hydrolase II domain superfamily MetaCyc: PWY-6308 RAM_39700 6451e5c5dca3b322245fb8fd68609839 259 Gene3D G3DSA:3.40.1490.10 157 258 1.3E-9 T 13-10-2018 IPR023476 Peptidyl-tRNA hydrolase II domain superfamily MetaCyc: PWY-6308 RAM_47720 b1e3c0b16e6d46d3782f23ddeb3602a1 130 SUPERFAMILY SSF46785 4 128 4.63E-11 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_47720 b1e3c0b16e6d46d3782f23ddeb3602a1 130 Gene3D G3DSA:1.10.10.10 1 130 5.2E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_18190 a7b16bdbcac9b1c61b4d6ea1b16c5680 146 ProSitePatterns PS01117 MarR-type HTH domain signature. 61 95 - T 13-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site RAM_18190 a7b16bdbcac9b1c61b4d6ea1b16c5680 146 SUPERFAMILY SSF46785 7 137 3.14E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_18190 a7b16bdbcac9b1c61b4d6ea1b16c5680 146 Gene3D G3DSA:1.10.10.10 4 139 4.4E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_18190 a7b16bdbcac9b1c61b4d6ea1b16c5680 146 Pfam PF12802 MarR family 29 86 1.6E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_18190 a7b16bdbcac9b1c61b4d6ea1b16c5680 146 SMART SM00347 22 122 7.5E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_30925 754ad4c2239d0d640abbd0e2070233f3 691 SUPERFAMILY SSF48452 502 659 2.8E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_30925 754ad4c2239d0d640abbd0e2070233f3 691 Gene3D G3DSA:1.25.40.10 498 690 8.8E-9 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_24595 0646ff2ce7a2e9b6f0f59eb45339c6c8 832 Pfam PF09684 Phage tail protein (Tail_P2_I) 688 816 9.7E-12 T 13-10-2018 IPR006521 Tail protein I RAM_24595 0646ff2ce7a2e9b6f0f59eb45339c6c8 832 TIGRFAM TIGR02242 tail_TIGR02242: phage tail protein domain 670 772 5.4E-28 T 13-10-2018 IPR011748 Uncharacterised protein family, phage tail-like RAM_24595 0646ff2ce7a2e9b6f0f59eb45339c6c8 832 Pfam PF04865 Baseplate J-like protein 400 575 7.1E-11 T 13-10-2018 IPR006949 Baseplate protein J-like RAM_24595 0646ff2ce7a2e9b6f0f59eb45339c6c8 832 TIGRFAM TIGR02243 TIGR02243: putative baseplate assembly protein 7 601 2.0E-140 T 13-10-2018 IPR011749 Conserved hypothetical protein CHP02243 RAM_29715 4bdb03cb7e90044fb55697805f8055b1 132 Pfam PF13586 Transposase DDE domain 38 115 2.5E-11 T 13-10-2018 IPR025668 Transposase DDE domain RAM_23035 4bdb03cb7e90044fb55697805f8055b1 132 Pfam PF13586 Transposase DDE domain 38 115 2.5E-11 T 13-10-2018 IPR025668 Transposase DDE domain RAM_47180 a50f4eb8488eb9ac7decbbb93cd27bc1 279 Gene3D G3DSA:3.30.450.180 112 278 2.1E-7 T 13-10-2018 RAM_47180 a50f4eb8488eb9ac7decbbb93cd27bc1 279 Pfam PF13560 Helix-turn-helix domain 13 92 1.0E-14 T 13-10-2018 RAM_47180 a50f4eb8488eb9ac7decbbb93cd27bc1 279 SUPERFAMILY SSF47413 37 85 1.13E-5 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_47180 a50f4eb8488eb9ac7decbbb93cd27bc1 279 SMART SM00530 17 89 0.0015 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_36600 bc0d2f14046908d0322b5440265eae52 117 Gene3D G3DSA:3.10.180.10 39 116 2.1E-8 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_29295 5994ae82823266261c4f41a36448321e 602 Gene3D G3DSA:1.50.10.10 239 599 1.5E-49 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 RAM_29295 5994ae82823266261c4f41a36448321e 602 SUPERFAMILY SSF48208 242 593 2.49E-58 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RAM_29295 5994ae82823266261c4f41a36448321e 602 Pfam PF00723 Glycosyl hydrolases family 15 256 531 2.4E-20 T 13-10-2018 IPR011613 GH15-like domain Reactome: R-HSA-70221 RAM_00475 d83cd7c04a89a282353262a251a2e3e7 255 Gene3D G3DSA:2.60.40.2230 27 195 4.0E-45 T 13-10-2018 IPR038507 YcnI-like superfamily RAM_00475 d83cd7c04a89a282353262a251a2e3e7 255 Pfam PF07987 Domain of unkown function (DUF1775) 30 181 1.9E-44 T 13-10-2018 IPR012533 YcnI-like RAM_20395 69978f0ff28b2cbf49b0421fc2980531 526 Gene3D G3DSA:3.40.50.1820 70 273 1.2E-6 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_20395 69978f0ff28b2cbf49b0421fc2980531 526 Pfam PF07519 Tannase and feruloyl esterase 57 525 3.3E-104 T 13-10-2018 IPR011118 Tannase/feruloyl esterase MetaCyc: PWY-6784 RAM_20395 69978f0ff28b2cbf49b0421fc2980531 526 SUPERFAMILY SSF53474 75 465 1.1E-13 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_31340 99d3c8d933a1d0e122739cb653095567 167 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 9 160 4.6E-12 T 13-10-2018 IPR019587 Polyketide cyclase/dehydrase RAM_31340 99d3c8d933a1d0e122739cb653095567 167 SUPERFAMILY SSF55961 8 163 4.69E-20 T 13-10-2018 RAM_31340 99d3c8d933a1d0e122739cb653095567 167 Gene3D G3DSA:3.30.530.20 7 165 2.2E-36 T 13-10-2018 IPR023393 START-like domain superfamily RAM_27655 75425b46e90d93c1ff461413d9f916b4 127 Pfam PF04486 SchA/CurD like domain 1 119 3.3E-55 T 13-10-2018 IPR007575 SchA/CurD-like domain RAM_05100 e6dc345b9c486dca5d0a5e42e1d0505b 146 Pfam PF07681 DoxX 9 91 8.1E-18 T 13-10-2018 IPR032808 DoxX family RAM_30020 1c214be4ea49202956f167b4e25fb83c 328 Pfam PF12730 ABC-2 family transporter protein 76 211 2.6E-6 T 13-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 RAM_07395 c082f9f6c5c7e57662ce7f53c607f7df 178 Gene3D G3DSA:1.10.10.10 9 157 2.2E-32 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_07395 c082f9f6c5c7e57662ce7f53c607f7df 178 SMART SM00347 35 138 0.0022 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_07395 c082f9f6c5c7e57662ce7f53c607f7df 178 Pfam PF12802 MarR family 46 100 4.5E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RAM_07395 c082f9f6c5c7e57662ce7f53c607f7df 178 SUPERFAMILY SSF46785 7 153 2.33E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_43970 cfebc527c7d6a0554f1e143ec48a4364 204 Gene3D G3DSA:3.30.70.2390 107 195 3.5E-33 T 13-10-2018 RAM_43970 cfebc527c7d6a0554f1e143ec48a4364 204 Pfam PF13399 LytR cell envelope-related transcriptional attenuator 108 197 2.1E-13 T 13-10-2018 IPR027381 Putative LytR/CpsA/Psr regulator, C-terminal domain RAM_16395 d547e7d4bd3b8b5ed71e1033e3b353df 108 TIGRFAM TIGR03462 CarR_dom_SF: lycopene cyclase domain 5 93 1.9E-21 T 13-10-2018 IPR017825 Lycopene cyclase domain GO:0016872 KEGG: 00906+2.5.1.32+5.5.1.19|MetaCyc: PWY-5943|MetaCyc: PWY-5947|MetaCyc: PWY-6279|MetaCyc: PWY-7591|MetaCyc: PWY-7938|MetaCyc: PWY-7939|MetaCyc: PWY-7947 RAM_42485 355f3a4bb28d169e0307086972feafbc 239 Pfam PF10979 Protein of unknown function (DUF2786) 8 46 1.4E-15 T 13-10-2018 IPR024498 Domain of unknown function DUF2786 RAM_42485 355f3a4bb28d169e0307086972feafbc 239 ProDom PD120223 SCO3432 GENE ML2604 GP79 GP77 CGL2230 MB0190 3 232 2.0E-29 T 13-10-2018 RAM_31585 ccbfa39ac20705a87f08b050ae820fbf 148 SUPERFAMILY SSF140990 16 147 2.35E-7 T 13-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 RAM_31080 413cf08cc15c31c09f91456847f421c0 324 SUPERFAMILY SSF53613 5 291 1.11E-66 T 13-10-2018 IPR029056 Ribokinase-like RAM_31080 413cf08cc15c31c09f91456847f421c0 324 Gene3D G3DSA:3.40.1190.20 5 307 1.5E-77 T 13-10-2018 IPR029056 Ribokinase-like RAM_31080 413cf08cc15c31c09f91456847f421c0 324 Pfam PF00294 pfkB family carbohydrate kinase 6 288 1.0E-47 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB RAM_08575 01a9f49aba00c4e4c659553dfc078b32 93 Pfam PF04149 Domain of unknown function (DUF397) 22 79 2.8E-12 T 13-10-2018 IPR007278 Domain of unknown function DUF397 RAM_04040 d65f5637a347b9ad2fb5d0bb219a8924 370 Gene3D G3DSA:1.10.510.10 93 254 2.3E-30 T 13-10-2018 RAM_04040 d65f5637a347b9ad2fb5d0bb219a8924 370 Gene3D G3DSA:3.30.200.20 1 92 1.5E-19 T 13-10-2018 RAM_04040 d65f5637a347b9ad2fb5d0bb219a8924 370 Pfam PF00069 Protein kinase domain 13 242 4.0E-30 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_04040 d65f5637a347b9ad2fb5d0bb219a8924 370 SUPERFAMILY SSF56112 8 320 1.04E-53 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_47620 a811cd94bba6adcb0289c2a6c927cfab 131 Pfam PF17249 Family of unknown function (DUF5318) 2 129 7.9E-67 T 13-10-2018 IPR035169 Protein of unknown function DUF5318 RAM_04800 3be953efac73f80334e6067e1aaecae6 526 SUPERFAMILY SSF140864 23 349 3.01E-47 T 13-10-2018 IPR037214 TROVE domain superfamily RAM_04800 3be953efac73f80334e6067e1aaecae6 526 Gene3D G3DSA:3.40.50.410 340 479 4.0E-5 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RAM_04800 3be953efac73f80334e6067e1aaecae6 526 SUPERFAMILY SSF53300 350 516 5.28E-13 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RAM_04800 3be953efac73f80334e6067e1aaecae6 526 Pfam PF05731 TROVE domain 226 349 6.0E-18 T 13-10-2018 IPR008858 TROVE domain GO:0003723 RAM_17395 3c9a96936988962353f6a7e7ff76a36a 474 PIRSF PIRSF006060 1 470 2.6E-74 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RAM_17395 3c9a96936988962353f6a7e7ff76a36a 474 Pfam PF13520 Amino acid permease 17 419 1.3E-49 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RAM_17395 3c9a96936988962353f6a7e7ff76a36a 474 Gene3D G3DSA:1.20.1740.10 12 459 1.4E-68 T 13-10-2018 RAM_47140 f7b32a2f34d484616027354544e6814c 359 Gene3D G3DSA:3.40.50.720 3 337 4.5E-106 T 13-10-2018 RAM_47140 f7b32a2f34d484616027354544e6814c 359 Gene3D G3DSA:3.30.360.10 136 344 4.5E-106 T 13-10-2018 RAM_47140 f7b32a2f34d484616027354544e6814c 359 SUPERFAMILY SSF51735 3 173 1.41E-43 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_47140 f7b32a2f34d484616027354544e6814c 359 SUPERFAMILY SSF55347 131 285 1.73E-17 T 13-10-2018 RAM_47140 f7b32a2f34d484616027354544e6814c 359 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 123 2.0E-16 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 RAM_16400 b6a1ab121f9ed84452a6244d41ce59be 122 SUPERFAMILY SSF54427 1 118 3.01E-10 T 13-10-2018 IPR032710 NTF2-like domain superfamily RAM_16400 b6a1ab121f9ed84452a6244d41ce59be 122 Gene3D G3DSA:3.10.450.50 1 121 2.7E-21 T 13-10-2018 RAM_05095 3032f87bbc5978c38f2163658ea6b9c7 271 Pfam PF06724 Domain of Unknown Function (DUF1206) 200 268 5.4E-17 T 13-10-2018 IPR009597 Domain of unknown function DUF1206 RAM_05095 3032f87bbc5978c38f2163658ea6b9c7 271 Pfam PF06724 Domain of Unknown Function (DUF1206) 104 174 8.5E-15 T 13-10-2018 IPR009597 Domain of unknown function DUF1206 RAM_05095 3032f87bbc5978c38f2163658ea6b9c7 271 Pfam PF06724 Domain of Unknown Function (DUF1206) 23 89 5.7E-20 T 13-10-2018 IPR009597 Domain of unknown function DUF1206 RAM_19505 32be5b4170d382bc65ec1b780c558516 281 Gene3D G3DSA:3.10.129.90 4 273 1.9E-76 T 13-10-2018 RAM_19505 32be5b4170d382bc65ec1b780c558516 281 Pfam PF13622 Thioesterase-like superfamily 31 271 2.7E-48 T 13-10-2018 RAM_19505 32be5b4170d382bc65ec1b780c558516 281 SUPERFAMILY SSF54637 8 110 2.28E-26 T 13-10-2018 IPR029069 HotDog domain superfamily RAM_19505 32be5b4170d382bc65ec1b780c558516 281 SUPERFAMILY SSF54637 116 271 6.34E-38 T 13-10-2018 IPR029069 HotDog domain superfamily RAM_36175 086e92eae6bf171d349189493548bcc7 118 Gene3D G3DSA:3.10.180.10 3 117 6.3E-25 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_36175 086e92eae6bf171d349189493548bcc7 118 SUPERFAMILY SSF54593 2 117 1.88E-21 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_36175 086e92eae6bf171d349189493548bcc7 118 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 9 111 6.2E-9 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RAM_25850 0279c1cbff1af9c0d24e9d878584a074 251 Pfam PF00005 ABC transporter 18 157 4.5E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAM_25850 0279c1cbff1af9c0d24e9d878584a074 251 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAM_25850 0279c1cbff1af9c0d24e9d878584a074 251 SMART SM00382 27 208 2.4E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_25850 0279c1cbff1af9c0d24e9d878584a074 251 SUPERFAMILY SSF52540 4 223 8.78E-65 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_25850 0279c1cbff1af9c0d24e9d878584a074 251 Gene3D G3DSA:3.40.50.300 1 230 7.9E-64 T 13-10-2018 RAM_05735 2678a350fd39aad6d6974e2a728bf0e1 131 Gene3D G3DSA:2.40.350.10 2 129 9.2E-34 T 13-10-2018 IPR023159 SO1590-like superfamily RAM_05735 2678a350fd39aad6d6974e2a728bf0e1 131 SUPERFAMILY SSF159238 4 131 2.35E-29 T 13-10-2018 IPR023159 SO1590-like superfamily RAM_05735 2678a350fd39aad6d6974e2a728bf0e1 131 Pfam PF11528 Protein of unknown function (DUF3224) 4 129 1.6E-35 T 13-10-2018 IPR021607 Protein of unknown function DUF3224 RAM_37345 adc2baccf8a6979bcb8fc9899653912c 274 SUPERFAMILY SSF52096 3 256 4.39E-71 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RAM_37345 adc2baccf8a6979bcb8fc9899653912c 274 Pfam PF00378 Enoyl-CoA hydratase/isomerase 13 256 3.8E-43 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RAM_37345 adc2baccf8a6979bcb8fc9899653912c 274 Gene3D G3DSA:3.90.226.10 1 256 6.9E-71 T 13-10-2018 RAM_38415 781a1a01a26a821e8453bde7bce6d4a8 343 Gene3D G3DSA:3.40.50.1820 45 343 1.2E-75 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_38415 781a1a01a26a821e8453bde7bce6d4a8 343 PRINTS PR00412 Epoxide hydrolase signature 147 160 9.3E-14 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_38415 781a1a01a26a821e8453bde7bce6d4a8 343 PRINTS PR00412 Epoxide hydrolase signature 99 114 9.3E-14 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_38415 781a1a01a26a821e8453bde7bce6d4a8 343 PRINTS PR00412 Epoxide hydrolase signature 79 97 9.3E-14 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_38415 781a1a01a26a821e8453bde7bce6d4a8 343 PRINTS PR00412 Epoxide hydrolase signature 161 174 9.3E-14 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_38415 781a1a01a26a821e8453bde7bce6d4a8 343 PRINTS PR00412 Epoxide hydrolase signature 318 340 9.3E-14 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_38415 781a1a01a26a821e8453bde7bce6d4a8 343 Pfam PF00561 alpha/beta hydrolase fold 74 325 4.8E-17 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_38415 781a1a01a26a821e8453bde7bce6d4a8 343 SUPERFAMILY SSF53474 53 339 8.42E-53 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_42490 1f75c75e9555e9cbb6ce942e57e66390 245 SUPERFAMILY SSF55729 40 146 1.02E-6 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_42490 1f75c75e9555e9cbb6ce942e57e66390 245 Gene3D G3DSA:3.40.630.30 31 208 5.1E-25 T 13-10-2018 RAM_26840 5e6c86d941e35566b439b849cfff8f41 122 Pfam PF05331 Protein of unknown function (DUF742) 11 120 2.2E-28 T 13-10-2018 IPR007995 Protein of unknown function DUF742 RAM_46725 5cccd5fceff4640642443069905e1f12 273 Pfam PF00296 Luciferase-like monooxygenase 20 115 5.3E-9 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_46725 5cccd5fceff4640642443069905e1f12 273 TIGRFAM TIGR03620 F420_MSMEG_4141: probable F420-dependent oxidoreductase, MSMEG_4141 family 5 271 1.9E-108 T 13-10-2018 IPR019922 Luciferase-like, F420-dependent oxidoreductase, MSMEG4141, predicted RAM_46725 5cccd5fceff4640642443069905e1f12 273 Gene3D G3DSA:3.20.20.30 122 273 5.2E-10 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_46725 5cccd5fceff4640642443069905e1f12 273 Gene3D G3DSA:3.20.20.30 17 121 2.7E-10 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_46725 5cccd5fceff4640642443069905e1f12 273 SUPERFAMILY SSF51679 19 264 5.55E-29 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_44000 da4a5374afbdbb826ec8dfe659734a5c 265 SUPERFAMILY SSF53613 3 261 1.87E-72 T 13-10-2018 IPR029056 Ribokinase-like RAM_44000 da4a5374afbdbb826ec8dfe659734a5c 265 Pfam PF08543 Phosphomethylpyrimidine kinase 13 257 1.0E-88 T 13-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 RAM_44000 da4a5374afbdbb826ec8dfe659734a5c 265 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 6 259 1.3E-88 T 13-10-2018 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RAM_44000 da4a5374afbdbb826ec8dfe659734a5c 265 Gene3D G3DSA:3.40.1190.20 1 265 2.6E-92 T 13-10-2018 IPR029056 Ribokinase-like RAM_23760 a770faa50c8028ca3e12fb746898383e 144 Gene3D G3DSA:2.40.50.140 82 143 1.0E-18 T 13-10-2018 RAM_23760 a770faa50c8028ca3e12fb746898383e 144 Pfam PF01957 NfeD-like C-terminal, partner-binding 6 141 2.4E-20 T 13-10-2018 IPR002810 NfeD-like, C-terminal domain RAM_23760 a770faa50c8028ca3e12fb746898383e 144 SUPERFAMILY SSF141322 78 141 3.79E-6 T 13-10-2018 RAM_38335 6bc7bf940e63aee9f227e24fd57f6830 711 Pfam PF03403 Platelet-activating factor acetylhydrolase, isoform II 411 509 1.3E-4 T 13-10-2018 IPR005065 Platelet-activating factor acetylhydrolase-like GO:0003847|GO:0016042 KEGG: 00565+3.1.1.47 RAM_38335 6bc7bf940e63aee9f227e24fd57f6830 711 SUPERFAMILY SSF53474 408 702 2.99E-17 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_38335 6bc7bf940e63aee9f227e24fd57f6830 711 SUPERFAMILY SSF53474 119 360 8.41E-19 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_38335 6bc7bf940e63aee9f227e24fd57f6830 711 Gene3D G3DSA:3.40.50.1820 25 361 2.1E-66 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_38335 6bc7bf940e63aee9f227e24fd57f6830 711 Gene3D G3DSA:3.40.50.1820 369 700 1.5E-62 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_46215 5601fde2783d6daaeb1422507be10c96 141 Pfam PF00085 Thioredoxin 48 124 5.6E-7 T 13-10-2018 IPR013766 Thioredoxin domain GO:0045454 RAM_46215 5601fde2783d6daaeb1422507be10c96 141 SUPERFAMILY SSF52833 49 135 2.28E-14 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RAM_46215 5601fde2783d6daaeb1422507be10c96 141 Gene3D G3DSA:3.40.30.10 24 134 1.1E-10 T 13-10-2018 RAM_34670 5d8f1db4087b7b7ffabc48b61ec5ca31 607 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 84 238 2.6E-33 T 13-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like RAM_01825 fea1fa99ec9be3f4584cbabeb4651726 318 Pfam PF09250 Bifunctional DNA primase/polymerase, N-terminal 14 199 7.0E-33 T 13-10-2018 IPR015330 DNA primase/polymerase, bifunctional, N-terminal RAM_01825 fea1fa99ec9be3f4584cbabeb4651726 318 SUPERFAMILY SSF56747 11 190 1.63E-18 T 13-10-2018 RAM_01825 fea1fa99ec9be3f4584cbabeb4651726 318 SMART SM00943 14 200 3.3E-26 T 13-10-2018 IPR015330 DNA primase/polymerase, bifunctional, N-terminal RAM_18025 cc29d41554aa0e59e3b9f60f19e55327 404 Pfam PF12704 MacB-like periplasmic core domain 33 249 9.9E-15 T 13-10-2018 IPR025857 MacB-like periplasmic core domain RAM_18025 cc29d41554aa0e59e3b9f60f19e55327 404 Pfam PF02687 FtsX-like permease family 311 398 4.2E-9 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 RAM_44950 231fb3c0bf347b791cbe6b04d10152ac 172 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 87 121 1.5E-7 T 13-10-2018 IPR001451 Hexapeptide repeat RAM_44950 231fb3c0bf347b791cbe6b04d10152ac 172 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 11 44 5.0E-5 T 13-10-2018 IPR001451 Hexapeptide repeat RAM_44950 231fb3c0bf347b791cbe6b04d10152ac 172 SUPERFAMILY SSF51161 1 166 1.21E-43 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily RAM_44950 231fb3c0bf347b791cbe6b04d10152ac 172 Gene3D G3DSA:2.160.10.10 2 170 5.8E-53 T 13-10-2018 RAM_18685 b3189e5e05004395c1a5e53fcacb0ccb 317 SUPERFAMILY SSF46785 243 313 4.82E-9 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_18685 b3189e5e05004395c1a5e53fcacb0ccb 317 Gene3D G3DSA:1.10.10.10 242 315 2.9E-9 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_25555 50100919469af59afb9a746c085fbbef 202 Gene3D G3DSA:2.40.260.10 54 201 9.3E-26 T 13-10-2018 IPR023365 Sortase domain superfamily RAM_25555 50100919469af59afb9a746c085fbbef 202 Pfam PF04203 Sortase family 60 198 2.3E-17 T 13-10-2018 IPR005754 Sortase family RAM_25555 50100919469af59afb9a746c085fbbef 202 SUPERFAMILY SSF63817 57 195 3.02E-13 T 13-10-2018 IPR023365 Sortase domain superfamily RAM_31685 4fdc082c9799f92293ec1e6039f2b07b 142 PRINTS PR00332 Histidine triad family signature 8 24 1.0E-7 T 13-10-2018 IPR001310 Histidine triad (HIT) protein RAM_31685 4fdc082c9799f92293ec1e6039f2b07b 142 PRINTS PR00332 Histidine triad family signature 29 47 1.0E-7 T 13-10-2018 IPR001310 Histidine triad (HIT) protein RAM_31685 4fdc082c9799f92293ec1e6039f2b07b 142 PRINTS PR00332 Histidine triad family signature 96 106 1.0E-7 T 13-10-2018 IPR001310 Histidine triad (HIT) protein RAM_31685 4fdc082c9799f92293ec1e6039f2b07b 142 Pfam PF01230 HIT domain 18 109 7.6E-17 T 13-10-2018 IPR001310 Histidine triad (HIT) protein RAM_31685 4fdc082c9799f92293ec1e6039f2b07b 142 SUPERFAMILY SSF54197 6 113 2.01E-32 T 13-10-2018 IPR036265 HIT-like superfamily RAM_31685 4fdc082c9799f92293ec1e6039f2b07b 142 Gene3D G3DSA:3.30.428.10 3 141 1.3E-34 T 13-10-2018 IPR036265 HIT-like superfamily RAM_20755 e01abf5b1330a46c5f9395cb849888d9 113 TIGRFAM TIGR03462 CarR_dom_SF: lycopene cyclase domain 5 93 5.6E-22 T 13-10-2018 IPR017825 Lycopene cyclase domain GO:0016872 KEGG: 00906+2.5.1.32+5.5.1.19|MetaCyc: PWY-5943|MetaCyc: PWY-5947|MetaCyc: PWY-6279|MetaCyc: PWY-7591|MetaCyc: PWY-7938|MetaCyc: PWY-7939|MetaCyc: PWY-7947 RAM_14445 eed105ca3522069e1ff03b2dcbc6918b 234 SUPERFAMILY SSF53335 3 213 2.13E-42 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_14445 eed105ca3522069e1ff03b2dcbc6918b 234 Gene3D G3DSA:3.40.50.150 1 212 4.7E-51 T 13-10-2018 RAM_14445 eed105ca3522069e1ff03b2dcbc6918b 234 Pfam PF08241 Methyltransferase domain 43 135 2.1E-24 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 RAM_42330 47498421b559c1c87df93bcb42a9e627 118 TIGRFAM TIGR03544 DivI1A_domain: DivIVA domain 3 39 5.2E-9 T 13-10-2018 IPR019933 DivIVA domain RAM_42330 47498421b559c1c87df93bcb42a9e627 118 TIGRFAM TIGR03544 DivI1A_domain: DivIVA domain 45 81 1.2E-12 T 13-10-2018 IPR019933 DivIVA domain RAM_10210 1f3544a02c28f5d12e802fb990c4a433 119 Gene3D G3DSA:3.30.70.1060 1 114 8.6E-27 T 13-10-2018 RAM_10210 1f3544a02c28f5d12e802fb990c4a433 119 Pfam PF03795 YCII-related domain 8 112 9.2E-15 T 13-10-2018 IPR005545 YCII-related RAM_10210 1f3544a02c28f5d12e802fb990c4a433 119 SUPERFAMILY SSF54909 4 114 2.95E-23 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_04940 c33fc57d53689aeb92b7ef3b774917fd 366 Gene3D G3DSA:3.30.565.10 242 363 1.1E-31 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_04940 c33fc57d53689aeb92b7ef3b774917fd 366 SUPERFAMILY SSF55874 249 363 4.68E-13 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_04940 c33fc57d53689aeb92b7ef3b774917fd 366 Pfam PF07730 Histidine kinase 171 236 1.0E-14 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_42850 709d9612ce79fdbeb68cbe802fc5af49 494 SUPERFAMILY SSF56112 5 267 8.77E-69 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_42850 709d9612ce79fdbeb68cbe802fc5af49 494 Gene3D G3DSA:3.30.200.20 3 95 4.9E-28 T 13-10-2018 RAM_42850 709d9612ce79fdbeb68cbe802fc5af49 494 SMART SM00220 12 267 3.2E-57 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_42850 709d9612ce79fdbeb68cbe802fc5af49 494 Gene3D G3DSA:1.10.510.10 100 278 1.4E-42 T 13-10-2018 RAM_42850 709d9612ce79fdbeb68cbe802fc5af49 494 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 134 146 - T 13-10-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 RAM_42850 709d9612ce79fdbeb68cbe802fc5af49 494 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 18 41 - T 13-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 RAM_42850 709d9612ce79fdbeb68cbe802fc5af49 494 Pfam PF00069 Protein kinase domain 12 264 6.9E-47 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RAM_19950 d330b9153047907e131d635cc433b81b 421 Pfam PF01547 Bacterial extracellular solute-binding protein 46 329 4.8E-39 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein RAM_19950 d330b9153047907e131d635cc433b81b 421 SUPERFAMILY SSF53850 32 414 2.63E-71 T 13-10-2018 RAM_19950 d330b9153047907e131d635cc433b81b 421 Gene3D G3DSA:3.40.190.10 20 417 2.6E-79 T 13-10-2018 RAM_39005 a954b7741491c52e5e42c29442358462 135 Gene3D G3DSA:3.30.565.10 6 133 1.7E-30 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_39005 a954b7741491c52e5e42c29442358462 135 SUPERFAMILY SSF55874 36 128 7.43E-10 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_39005 a954b7741491c52e5e42c29442358462 135 Pfam PF13581 Histidine kinase-like ATPase domain 10 128 1.3E-20 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_16480 632db64d67c25edb5636b69161145500 373 Gene3D G3DSA:1.10.600.10 60 373 1.3E-62 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily RAM_16480 632db64d67c25edb5636b69161145500 373 SUPERFAMILY SSF48576 76 373 1.09E-31 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily RAM_33045 8562fc6dbb7e005ba8442badcfb3717a 200 Gene3D G3DSA:1.25.40.10 36 196 1.9E-42 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_33045 8562fc6dbb7e005ba8442badcfb3717a 200 SMART SM01043 37 179 1.3E-39 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_33045 8562fc6dbb7e005ba8442badcfb3717a 200 SUPERFAMILY SSF48452 33 191 5.56E-34 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_33045 8562fc6dbb7e005ba8442badcfb3717a 200 Pfam PF03704 Bacterial transcriptional activator domain 37 179 2.0E-36 T 13-10-2018 IPR005158 Bacterial transcriptional activator domain RAM_26695 c3fbe552ce504edfca12cefa2baeb23a 81 Pfam PF03050 Transposase IS66 family 2 38 1.1E-7 T 13-10-2018 IPR004291 Transposase, IS66 RAM_11175 3567591d57ea135cd13eb33d0f473ab7 139 PIRSF PIRSF017385 1 139 5.0E-50 T 13-10-2018 IPR021050 Cytochrome c oxidase subunit IV, actinobacteria GO:0004129|GO:0016021|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 RAM_11175 3567591d57ea135cd13eb33d0f473ab7 139 Pfam PF12270 Cytochrome c oxidase subunit IV 1 137 1.2E-51 T 13-10-2018 IPR021050 Cytochrome c oxidase subunit IV, actinobacteria GO:0004129|GO:0016021|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 RAM_10540 3bb13ca7a5c69bbc966d4fdc1b0b0427 117 SUPERFAMILY SSF54593 5 115 2.2E-15 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_10540 3bb13ca7a5c69bbc966d4fdc1b0b0427 117 Gene3D G3DSA:3.10.180.10 2 117 7.3E-34 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_40820 83377e666d0b790ce671b7060047d422 278 SMART SM00304 189 242 8.6E-6 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RAM_40820 83377e666d0b790ce671b7060047d422 278 Gene3D G3DSA:1.10.287.130 186 251 4.7E-6 T 13-10-2018 RAM_40820 83377e666d0b790ce671b7060047d422 278 SUPERFAMILY SSF158472 189 239 2.35E-5 T 13-10-2018 RAM_45910 860b4ab96f72d7c6e6a71347f78cb8f4 404 SUPERFAMILY SSF57997 74 189 7.85E-5 T 13-10-2018 RAM_06355 dbc2026b7040683a7c42a8099075bf72 297 PIRSF PIRSF003097 1 297 1.8E-74 T 13-10-2018 IPR004513 Cell division protein FtsX GO:0016021 RAM_06355 dbc2026b7040683a7c42a8099075bf72 297 Gene3D G3DSA:3.30.70.3040 43 160 2.1E-35 T 13-10-2018 RAM_15175 fac1017e7f56456d63f9c21d286c4726 153 SUPERFAMILY SSF50475 11 143 1.2E-18 T 13-10-2018 RAM_15175 fac1017e7f56456d63f9c21d286c4726 153 Gene3D G3DSA:2.30.110.10 9 147 3.3E-22 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_26670 c8127dae66e3ef4ab16feab1bd5bc2d5 114 Pfam PF10824 Excreted virulence factor EspC, type VII ESX diderm 6 95 6.0E-10 T 13-10-2018 IPR022536 ESX-1 secretion-associated protein EspC GO:0009306 RAM_03275 020f2f0cdb848a51d314aad7189a496a 430 Gene3D G3DSA:3.90.1150.10 23 391 1.8E-95 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RAM_03275 020f2f0cdb848a51d314aad7189a496a 430 Gene3D G3DSA:3.40.640.10 54 329 1.8E-95 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RAM_03275 020f2f0cdb848a51d314aad7189a496a 430 Pfam PF00202 Aminotransferase class-III 19 391 1.3E-66 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RAM_03275 020f2f0cdb848a51d314aad7189a496a 430 SUPERFAMILY SSF53383 15 395 1.01E-84 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RAM_03275 020f2f0cdb848a51d314aad7189a496a 430 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 241 279 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RAM_19725 c46b262a9683992e6bad42bbcaf4c69e 448 SUPERFAMILY SSF56801 99 413 1.57E-8 T 13-10-2018 RAM_38435 066884dbae144e0f6aeb5a76c6d3fa76 404 SUPERFAMILY SSF51338 4 403 5.41E-19 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_38435 066884dbae144e0f6aeb5a76c6d3fa76 404 Gene3D G3DSA:2.30.40.10 9 400 4.5E-135 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RAM_38435 066884dbae144e0f6aeb5a76c6d3fa76 404 Pfam PF01979 Amidohydrolase family 53 401 3.9E-42 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RAM_38435 066884dbae144e0f6aeb5a76c6d3fa76 404 Gene3D G3DSA:3.20.20.140 58 358 4.5E-135 T 13-10-2018 RAM_38435 066884dbae144e0f6aeb5a76c6d3fa76 404 SUPERFAMILY SSF51556 57 362 2.47E-86 T 13-10-2018 IPR032466 Metal-dependent hydrolase RAM_17935 7e36812cfe315af661bd97af09c6ddde 967 Gene3D G3DSA:3.40.50.300 133 328 1.2E-8 T 13-10-2018 RAM_17935 7e36812cfe315af661bd97af09c6ddde 967 SMART SM00382 198 341 0.0019 T 13-10-2018 IPR003593 AAA+ ATPase domain RAM_17935 7e36812cfe315af661bd97af09c6ddde 967 SUPERFAMILY SSF52540 200 364 1.14E-9 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_17935 7e36812cfe315af661bd97af09c6ddde 967 Pfam PF05729 NACHT domain 201 355 2.0E-8 T 13-10-2018 IPR007111 NACHT nucleoside triphosphatase RAM_11990 70f82bb01928df785ea989d80fe62da8 236 Pfam PF06912 Protein of unknown function (DUF1275) 12 210 3.4E-36 T 13-10-2018 IPR010699 Protein of unknown function DUF1275 RAM_08085 dc97a80962e70f5166f095c3b691a4ef 349 Pfam PF02653 Branched-chain amino acid transport system / permease component 63 335 3.8E-36 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 RAM_43185 a0261484871dee1f5b9594ce80d7e2ce 133 SUPERFAMILY SSF54637 5 131 5.41E-32 T 13-10-2018 IPR029069 HotDog domain superfamily RAM_43185 a0261484871dee1f5b9594ce80d7e2ce 133 Pfam PF03061 Thioesterase superfamily 46 124 2.3E-17 T 13-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 RAM_43185 a0261484871dee1f5b9594ce80d7e2ce 133 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 16 131 1.7E-23 T 13-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 RAM_43185 a0261484871dee1f5b9594ce80d7e2ce 133 Gene3D G3DSA:3.10.129.10 1 133 9.2E-35 T 13-10-2018 RAM_36365 4168fd957bb0b8580051d9db208b1208 126 Gene3D G3DSA:3.40.50.150 1 119 7.3E-12 T 13-10-2018 RAM_36365 4168fd957bb0b8580051d9db208b1208 126 SUPERFAMILY SSF53335 2 117 3.88E-8 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_34415 3ca9049ff5172048e8df7baebab26f3f 273 Pfam PF01061 ABC-2 type transporter 26 235 3.4E-22 T 13-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 RAM_34415 3ca9049ff5172048e8df7baebab26f3f 273 PRINTS PR00164 ABC-2 type transport system membrane protein signature 42 63 6.2E-17 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 RAM_34415 3ca9049ff5172048e8df7baebab26f3f 273 PRINTS PR00164 ABC-2 type transport system membrane protein signature 122 147 6.2E-17 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 RAM_34415 3ca9049ff5172048e8df7baebab26f3f 273 PRINTS PR00164 ABC-2 type transport system membrane protein signature 195 214 6.2E-17 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 RAM_34415 3ca9049ff5172048e8df7baebab26f3f 273 PRINTS PR00164 ABC-2 type transport system membrane protein signature 215 234 6.2E-17 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 RAM_34415 3ca9049ff5172048e8df7baebab26f3f 273 PRINTS PR00164 ABC-2 type transport system membrane protein signature 159 183 6.2E-17 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 RAM_34415 3ca9049ff5172048e8df7baebab26f3f 273 PIRSF PIRSF006648 8 271 1.1E-25 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 RAM_40785 a8c5a304e36b87a78ed3893d57f59362 206 Gene3D G3DSA:3.40.50.150 4 200 4.7E-41 T 13-10-2018 RAM_40785 a8c5a304e36b87a78ed3893d57f59362 206 Pfam PF13649 Methyltransferase domain 48 138 2.7E-19 T 13-10-2018 RAM_40785 a8c5a304e36b87a78ed3893d57f59362 206 SUPERFAMILY SSF53335 4 193 1.14E-36 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_34620 87544eec1ac33692bf79aa2a94167c4c 357 Gene3D G3DSA:1.10.260.40 3 75 3.5E-7 T 13-10-2018 RAM_34620 87544eec1ac33692bf79aa2a94167c4c 357 Pfam PF13560 Helix-turn-helix domain 11 76 2.2E-7 T 13-10-2018 RAM_34620 87544eec1ac33692bf79aa2a94167c4c 357 SMART SM00530 15 80 0.0016 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAM_09040 c03a4a7ee6d865305424044efdf73fab 264 Pfam PF02405 Permease MlaE 44 253 1.7E-65 T 13-10-2018 IPR030802 ABC transporter permease MalE GO:0043190 RAM_40490 6da5b412d243c3153302cc501a7cbe2f 165 SUPERFAMILY SSF50891 6 151 4.55E-8 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily RAM_40490 6da5b412d243c3153302cc501a7cbe2f 165 Gene3D G3DSA:2.40.100.20 2 165 1.4E-62 T 13-10-2018 RAM_40490 6da5b412d243c3153302cc501a7cbe2f 165 Pfam PF12903 Protein of unknown function (DUF3830) 7 164 5.5E-66 T 13-10-2018 IPR024532 Protein of unknown function DUF3830 RAM_31395 1f22ed97c23e7c08450a6c7805b32579 148 Pfam PF02566 OsmC-like protein 40 143 9.1E-21 T 13-10-2018 IPR003718 OsmC/Ohr family RAM_31395 1f22ed97c23e7c08450a6c7805b32579 148 SUPERFAMILY SSF82784 8 144 8.24E-44 T 13-10-2018 IPR036102 OsmC/Ohr superfamily RAM_31395 1f22ed97c23e7c08450a6c7805b32579 148 Gene3D G3DSA:3.30.300.20 5 146 8.0E-42 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta RAM_38535 a83dbfd58e0567486c897c415ad0f6ff 226 Pfam PF10099 Anti-sigma-K factor rskA 58 221 5.3E-27 T 13-10-2018 IPR018764 Anti-sigma K factor RskA GO:0005886|GO:0016021 RAM_38535 a83dbfd58e0567486c897c415ad0f6ff 226 Pfam PF13490 Putative zinc-finger 10 36 9.7E-6 T 13-10-2018 IPR027383 Putative zinc-finger RAM_38535 a83dbfd58e0567486c897c415ad0f6ff 226 Gene3D G3DSA:1.10.10.1320 1 70 3.2E-20 T 13-10-2018 RAM_32845 2f37e3f214f0380824fa6069e392c1c0 273 SUPERFAMILY SSF81301 30 63 6.95E-5 T 13-10-2018 RAM_05835 ab4e0c9e8a05e8f3aaaaab109efffc99 522 Pfam PF09972 Predicted membrane protein (DUF2207) 27 459 1.6E-23 T 13-10-2018 IPR018702 Protein of unknown function DUF2207, membrane RAM_46655 21d2312380a1ae94b79208151838236f 165 SUPERFAMILY SSF82784 6 164 1.7E-40 T 13-10-2018 IPR036102 OsmC/Ohr superfamily RAM_46655 21d2312380a1ae94b79208151838236f 165 Pfam PF02566 OsmC-like protein 58 162 1.5E-23 T 13-10-2018 IPR003718 OsmC/Ohr family RAM_46655 21d2312380a1ae94b79208151838236f 165 Gene3D G3DSA:3.30.300.20 10 165 1.7E-46 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta RAM_46220 9ecb2729934838bf3dbbcc89d80ef91c 144 PIRSF PIRSF030042 12 143 4.1E-11 T 13-10-2018 IPR016942 Uncharacterised conserved protein UCP030042 RAM_46220 9ecb2729934838bf3dbbcc89d80ef91c 144 Pfam PF14340 Domain of unknown function (DUF4395) 7 136 1.1E-47 T 13-10-2018 IPR025508 Domain of unknown function DUF4395 RAM_27495 6625699e6d1711cf8fba11b6ffff1fdd 293 SUPERFAMILY SSF53448 2 286 4.51E-81 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_27495 6625699e6d1711cf8fba11b6ffff1fdd 293 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 2 286 1.1E-129 T 13-10-2018 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|KEGG: 00525+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 RAM_27495 6625699e6d1711cf8fba11b6ffff1fdd 293 Gene3D G3DSA:3.90.550.10 1 291 9.3E-77 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_27495 6625699e6d1711cf8fba11b6ffff1fdd 293 Pfam PF00483 Nucleotidyl transferase 2 237 5.1E-62 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 RAM_08075 404043d09ded8c67172e38a84b5ca830 231 SUPERFAMILY SSF55073 10 136 5.02E-5 T 13-10-2018 IPR029787 Nucleotide cyclase RAM_14330 4b1c970e202406fe53055efb94757262 286 SUPERFAMILY SSF56059 88 280 3.35E-13 T 13-10-2018 RAM_33565 418bd40c01c930b4e821c1ca8a7f1026 247 SUPERFAMILY SSF55781 35 178 1.37E-14 T 13-10-2018 RAM_33565 418bd40c01c930b4e821c1ca8a7f1026 247 Pfam PF13185 GAF domain 35 165 1.1E-7 T 13-10-2018 IPR003018 GAF domain GO:0005515 RAM_33565 418bd40c01c930b4e821c1ca8a7f1026 247 Gene3D G3DSA:3.30.450.40 15 183 7.8E-16 T 13-10-2018 IPR029016 GAF-like domain superfamily RAM_33565 418bd40c01c930b4e821c1ca8a7f1026 247 PIRSF PIRSF036625 2 245 4.0E-33 T 13-10-2018 IPR012074 GAF-ANTAR transcription anti-termination regulator, putative RAM_13145 9571231ba7960a6c60a37bde1bcde913 267 SUPERFAMILY SSF103481 23 112 3.01E-9 T 13-10-2018 RAM_13145 9571231ba7960a6c60a37bde1bcde913 267 Pfam PF00892 EamA-like transporter family 122 252 1.6E-14 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RAM_13145 9571231ba7960a6c60a37bde1bcde913 267 SUPERFAMILY SSF103481 158 257 7.32E-10 T 13-10-2018 RAM_31175 0ef7048631e8b90a03815cfc25a1037d 181 Gene3D G3DSA:2.60.40.10 19 91 1.2E-5 T 13-10-2018 IPR013783 Immunoglobulin-like fold RAM_31175 0ef7048631e8b90a03815cfc25a1037d 181 SUPERFAMILY SSF49265 20 85 8.86E-7 T 13-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 RAM_17990 3928513a8b6941d20f3f9e94293b0940 715 Pfam PF13515 Fusaric acid resistance protein-like 395 520 1.6E-12 T 13-10-2018 RAM_28510 ab0b9c7498761aa8debd2af3e645588c 118 SUPERFAMILY SSF69754 1 93 3.14E-6 T 13-10-2018 IPR036567 Ribosome hibernation promotion factor-like RAM_37460 8105725632373e51609025541604c64b 600 Gene3D G3DSA:3.40.50.300 333 524 6.7E-6 T 13-10-2018 RAM_37460 8105725632373e51609025541604c64b 600 SUPERFAMILY SSF52540 144 526 9.74E-13 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_10535 cece2ba1857dbdff41ff94a54cc25977 411 Pfam PF09594 Glycosyltransferase family 87 65 296 4.7E-46 T 13-10-2018 IPR018584 Glycosyltransferase family 87 GO:0016758 RAM_08175 a68ff0b7a2afb6f1520102762bfdbf93 131 Pfam PF00581 Rhodanese-like domain 21 117 2.6E-10 T 13-10-2018 IPR001763 Rhodanese-like domain RAM_08175 a68ff0b7a2afb6f1520102762bfdbf93 131 SMART SM00450 18 121 2.4E-15 T 13-10-2018 IPR001763 Rhodanese-like domain RAM_08175 a68ff0b7a2afb6f1520102762bfdbf93 131 Gene3D G3DSA:3.40.250.10 1 125 1.9E-27 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily RAM_08175 a68ff0b7a2afb6f1520102762bfdbf93 131 SUPERFAMILY SSF52821 7 125 3.8E-21 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily RAM_45770 4a358dfe9f01af1b80a49270ba459493 117 Pfam PF05331 Protein of unknown function (DUF742) 8 115 2.2E-27 T 13-10-2018 IPR007995 Protein of unknown function DUF742 RAM_02305 1e99886af1ef15f40183a60b8da41a37 266 SUPERFAMILY SSF53335 17 173 4.36E-7 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_21985 5a8613e51dc43ecbd71e3737734efe90 421 SUPERFAMILY SSF50974 111 408 5.23E-39 T 13-10-2018 IPR011045 Nitrous oxide reductase, N-terminal Reactome: R-HSA-114608 RAM_21985 5a8613e51dc43ecbd71e3737734efe90 421 Gene3D G3DSA:2.130.10.10 319 416 1.2E-11 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RAM_21985 5a8613e51dc43ecbd71e3737734efe90 421 Gene3D G3DSA:2.130.10.10 108 318 3.3E-22 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RAM_32580 d009b11185b4db14d37e5b5fc2fe6cfc 176 SUPERFAMILY SSF46689 5 70 1.5E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_32580 d009b11185b4db14d37e5b5fc2fe6cfc 176 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 56 4.2E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_32580 d009b11185b4db14d37e5b5fc2fe6cfc 176 Gene3D G3DSA:1.10.357.10 2 176 1.8E-22 T 13-10-2018 RAM_08520 4b542b4f6b52a6ee99493b741044c918 306 Pfam PF14100 Methane oxygenase PmoA 15 299 2.3E-79 T 13-10-2018 IPR029475 Methane oxygenase PmoA RAM_03840 61ed7a871a47f14af15d145ca10e6ec1 169 TIGRFAM TIGR04178 exo_archaeo: exosortase/archaeosortase family protein 70 163 2.4E-11 T 13-10-2018 IPR026392 Exosortase/Archaeosortase domain RAM_03840 61ed7a871a47f14af15d145ca10e6ec1 169 Pfam PF09721 Transmembrane exosortase (Exosortase_EpsH) 3 160 4.0E-7 T 13-10-2018 IPR019127 Exosortase RAM_05210 611906695214703e37b69e40d2e651ad 250 SUPERFAMILY SSF55729 132 247 7.38E-23 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_05210 611906695214703e37b69e40d2e651ad 250 Pfam PF00583 Acetyltransferase (GNAT) family 150 229 5.6E-13 T 13-10-2018 IPR000182 GNAT domain RAM_05210 611906695214703e37b69e40d2e651ad 250 Gene3D G3DSA:3.40.630.30 19 242 1.6E-24 T 13-10-2018 RAM_38530 8b7c35fb1113ad54fbe49641ae6034ef 491 SUPERFAMILY SSF81296 381 489 7.0E-24 T 13-10-2018 IPR014756 Immunoglobulin E-set RAM_38530 8b7c35fb1113ad54fbe49641ae6034ef 491 Pfam PF00174 Oxidoreductase molybdopterin binding domain 217 363 1.5E-34 T 13-10-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 RAM_38530 8b7c35fb1113ad54fbe49641ae6034ef 491 Gene3D G3DSA:3.90.420.10 171 374 1.1E-44 T 13-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 RAM_38530 8b7c35fb1113ad54fbe49641ae6034ef 491 Gene3D G3DSA:2.60.40.650 382 490 1.0E-23 T 13-10-2018 RAM_38530 8b7c35fb1113ad54fbe49641ae6034ef 491 SUPERFAMILY SSF56524 200 388 3.92E-50 T 13-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 RAM_28305 4aa8e5dae29616eecbfb43099f4c45ab 410 SUPERFAMILY SSF48264 6 389 1.3E-34 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_28305 4aa8e5dae29616eecbfb43099f4c45ab 410 Gene3D G3DSA:1.10.630.10 3 391 5.8E-36 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_28305 4aa8e5dae29616eecbfb43099f4c45ab 410 PRINTS PR00359 B-class P450 signature 350 361 2.6E-6 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_28305 4aa8e5dae29616eecbfb43099f4c45ab 410 PRINTS PR00359 B-class P450 signature 314 329 2.6E-6 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_28305 4aa8e5dae29616eecbfb43099f4c45ab 410 PRINTS PR00359 B-class P450 signature 269 280 2.6E-6 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_28305 4aa8e5dae29616eecbfb43099f4c45ab 410 PRINTS PR00359 B-class P450 signature 286 313 2.6E-6 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_28305 4aa8e5dae29616eecbfb43099f4c45ab 410 PRINTS PR00359 B-class P450 signature 146 161 2.6E-6 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RAM_28305 4aa8e5dae29616eecbfb43099f4c45ab 410 Pfam PF00067 Cytochrome P450 230 382 2.2E-23 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_15010 a62a6e255275ef5d120bcbf0e0afe0ca 244 Pfam PF07103 Protein of unknown function (DUF1365) 6 233 7.4E-58 T 13-10-2018 IPR010775 Protein of unknown function DUF1365 RAM_28310 d1c9ab2fadbcfe7fe1961da88e91ed88 297 SUPERFAMILY SSF48264 76 282 1.7E-29 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_28310 d1c9ab2fadbcfe7fe1961da88e91ed88 297 PRINTS PR00463 E-class P450 group I signature 241 264 3.6E-6 T 13-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_28310 d1c9ab2fadbcfe7fe1961da88e91ed88 297 PRINTS PR00463 E-class P450 group I signature 231 241 3.6E-6 T 13-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_28310 d1c9ab2fadbcfe7fe1961da88e91ed88 297 PRINTS PR00463 E-class P450 group I signature 200 224 3.6E-6 T 13-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_28310 d1c9ab2fadbcfe7fe1961da88e91ed88 297 Gene3D G3DSA:1.10.630.10 3 282 3.5E-29 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_28310 d1c9ab2fadbcfe7fe1961da88e91ed88 297 Pfam PF00067 Cytochrome P450 161 266 1.9E-21 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RAM_36160 52d7f4312efc13112d71d64dbba51940 337 Gene3D G3DSA:1.10.1610.10 5 330 8.3E-106 T 13-10-2018 IPR023195 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 RAM_36160 52d7f4312efc13112d71d64dbba51940 337 Gene3D G3DSA:3.40.50.10210 51 321 8.3E-106 T 13-10-2018 RAM_36160 52d7f4312efc13112d71d64dbba51940 337 TIGRFAM TIGR03160 cobT_DBIPRT: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 8 334 2.9E-102 T 13-10-2018 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 RAM_36160 52d7f4312efc13112d71d64dbba51940 337 Pfam PF02277 Phosphoribosyltransferase 5 333 6.8E-110 T 13-10-2018 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 RAM_36160 52d7f4312efc13112d71d64dbba51940 337 SUPERFAMILY SSF52733 2 335 2.22E-93 T 13-10-2018 IPR036087 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like superfamily GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 RAM_44530 122349a37b250c2534b0b77077d70693 222 SUPERFAMILY SSF110087 179 218 7.85E-6 T 13-10-2018 IPR036182 Copper chaperone PCuAC superfamily RAM_19170 765417e049ffcfb6b2e3bb03dbb40ba9 279 Gene3D G3DSA:3.40.50.1110 57 252 3.9E-14 T 13-10-2018 IPR036514 SGNH hydrolase superfamily RAM_19170 765417e049ffcfb6b2e3bb03dbb40ba9 279 SUPERFAMILY SSF52266 71 255 3.66E-15 T 13-10-2018 RAM_20685 8aa34d452586c6c6487cb94eb6a19adc 437 Gene3D G3DSA:1.20.1250.20 6 424 6.4E-65 T 13-10-2018 RAM_20685 8aa34d452586c6c6487cb94eb6a19adc 437 Pfam PF07690 Major Facilitator Superfamily 48 376 1.5E-27 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_20685 8aa34d452586c6c6487cb94eb6a19adc 437 SUPERFAMILY SSF103473 6 418 9.02E-63 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_31255 343134fb897335684e7a67ef867de2be 620 TIGRFAM TIGR00831 a_cpa1: Na+/H+ antiporter 1 514 8.6E-94 T 13-10-2018 IPR004705 Cation/H+ exchanger, CPA1 family, bacteria GO:0006812|GO:0015299|GO:0016021 RAM_31255 343134fb897335684e7a67ef867de2be 620 SUPERFAMILY SSF57850 537 617 3.77E-22 T 13-10-2018 RAM_31255 343134fb897335684e7a67ef867de2be 620 Pfam PF02148 Zn-finger in ubiquitin-hydrolases and other protein 556 616 7.3E-10 T 13-10-2018 IPR001607 Zinc finger, UBP-type GO:0008270 RAM_31255 343134fb897335684e7a67ef867de2be 620 Gene3D G3DSA:3.30.40.10 534 619 3.6E-25 T 13-10-2018 IPR013083 Zinc finger, RING/FYVE/PHD-type RAM_31255 343134fb897335684e7a67ef867de2be 620 Pfam PF00999 Sodium/hydrogen exchanger family 2 395 8.2E-55 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 RAM_22570 c2afa0cba74c3bf05bc4db610bf6eef2 205 Pfam PF04854 Protein of unknown function, DUF624 25 92 7.9E-6 T 13-10-2018 IPR006938 Protein of unknown function DUF624 RAM_44745 aaf1a8d831fb8bf56e06ebb613828035 269 Pfam PF01061 ABC-2 type transporter 25 233 1.1E-32 T 13-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 RAM_44745 aaf1a8d831fb8bf56e06ebb613828035 269 PIRSF PIRSF006648 2 269 3.0E-79 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 RAM_43095 ed502d432ec72032a698508bd594070f 272 Pfam PF00296 Luciferase-like monooxygenase 12 119 1.5E-15 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_43095 ed502d432ec72032a698508bd594070f 272 Pfam PF00296 Luciferase-like monooxygenase 135 202 8.2E-5 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_43095 ed502d432ec72032a698508bd594070f 272 SUPERFAMILY SSF51679 3 257 1.15E-29 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_43095 ed502d432ec72032a698508bd594070f 272 Gene3D G3DSA:3.20.20.30 128 267 1.1E-6 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_43095 ed502d432ec72032a698508bd594070f 272 Gene3D G3DSA:3.20.20.30 4 127 2.9E-20 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_37525 184cebe4fc41d4e233d7d2cf91c30049 158 SUPERFAMILY SSF102405 2 154 9.15E-11 T 13-10-2018 RAM_45755 8222bfc2b5178f7dde016f8a6901a1d9 484 Pfam PF03752 Short repeats of unknown function 386 426 2.8E-15 T 13-10-2018 IPR005506 Protein of unknown function DUF312 RAM_45755 8222bfc2b5178f7dde016f8a6901a1d9 484 Pfam PF03752 Short repeats of unknown function 292 332 2.5E-10 T 13-10-2018 IPR005506 Protein of unknown function DUF312 RAM_45755 8222bfc2b5178f7dde016f8a6901a1d9 484 Pfam PF03752 Short repeats of unknown function 5 45 1.4E-12 T 13-10-2018 IPR005506 Protein of unknown function DUF312 RAM_45755 8222bfc2b5178f7dde016f8a6901a1d9 484 Pfam PF03752 Short repeats of unknown function 97 138 1.4E-13 T 13-10-2018 IPR005506 Protein of unknown function DUF312 RAM_45755 8222bfc2b5178f7dde016f8a6901a1d9 484 Pfam PF03752 Short repeats of unknown function 51 88 1.2E-10 T 13-10-2018 IPR005506 Protein of unknown function DUF312 RAM_45755 8222bfc2b5178f7dde016f8a6901a1d9 484 Pfam PF03752 Short repeats of unknown function 144 178 3.7E-9 T 13-10-2018 IPR005506 Protein of unknown function DUF312 RAM_24120 28129aefc645e7cb2c78004250d23d22 336 SUPERFAMILY SSF46689 263 310 3.32E-6 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_24120 28129aefc645e7cb2c78004250d23d22 336 SUPERFAMILY SSF46689 209 257 1.43E-6 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_24120 28129aefc645e7cb2c78004250d23d22 336 Gene3D G3DSA:3.40.50.880 1 205 9.2E-59 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_24120 28129aefc645e7cb2c78004250d23d22 336 SMART SM00342 226 309 1.1E-16 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_24120 28129aefc645e7cb2c78004250d23d22 336 SUPERFAMILY SSF52317 1 191 9.35E-48 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_24120 28129aefc645e7cb2c78004250d23d22 336 Gene3D G3DSA:1.10.10.60 208 316 2.6E-22 T 13-10-2018 RAM_24120 28129aefc645e7cb2c78004250d23d22 336 Pfam PF12833 Helix-turn-helix domain 232 310 1.5E-16 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RAM_24120 28129aefc645e7cb2c78004250d23d22 336 Pfam PF01965 DJ-1/PfpI family 2 170 2.9E-23 T 13-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 RAM_21240 3c38f1cb9e5dabdc70e7c3fb1a11c927 502 SMART SM00481 190 254 0.0036 T 13-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal RAM_21240 3c38f1cb9e5dabdc70e7c3fb1a11c927 502 SUPERFAMILY SSF89550 187 388 6.41E-32 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 RAM_21240 3c38f1cb9e5dabdc70e7c3fb1a11c927 502 Gene3D G3DSA:3.20.20.140 176 395 1.6E-43 T 13-10-2018 RAM_21240 3c38f1cb9e5dabdc70e7c3fb1a11c927 502 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 5 29 2.7E-5 T 13-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal RAM_42830 6351d5b909867f350250befe6a3e1f23 334 Gene3D G3DSA:3.20.20.100 4 334 1.4E-82 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_42830 6351d5b909867f350250befe6a3e1f23 334 Pfam PF00248 Aldo/keto reductase family 19 332 3.2E-51 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain RAM_42830 6351d5b909867f350250befe6a3e1f23 334 SUPERFAMILY SSF51430 4 334 3.14E-75 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_23360 a92192a498eaf478fbd2c79f737ddc8d 125 Gene3D G3DSA:3.10.490.10 1 125 7.0E-35 T 13-10-2018 RAM_23360 a92192a498eaf478fbd2c79f737ddc8d 125 SUPERFAMILY SSF110857 3 70 1.96E-9 T 13-10-2018 IPR036568 Gamma-glutamyl cyclotransferase-like superfamily RAM_23360 a92192a498eaf478fbd2c79f737ddc8d 125 Pfam PF06094 Gamma-glutamyl cyclotransferase, AIG2-like 5 70 5.8E-7 T 13-10-2018 IPR009288 Gamma-glutamylcyclotransferase, AIG2-like RAM_31590 6d757d5bbabbcde40a1135f421b7ad25 770 SUPERFAMILY SSF52540 386 603 1.38E-10 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_31590 6d757d5bbabbcde40a1135f421b7ad25 770 Gene3D G3DSA:3.40.50.300 385 673 9.2E-32 T 13-10-2018 RAM_11830 08b7645f2f74db31cc640317d82ed5dd 363 Gene3D G3DSA:1.10.600.10 2 363 1.6E-113 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily RAM_11830 08b7645f2f74db31cc640317d82ed5dd 363 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 93 107 - T 13-10-2018 IPR033749 Polyprenyl synthetase, conserved site RAM_11830 08b7645f2f74db31cc640317d82ed5dd 363 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 237 249 - T 13-10-2018 IPR033749 Polyprenyl synthetase, conserved site RAM_11830 08b7645f2f74db31cc640317d82ed5dd 363 Pfam PF00348 Polyprenyl synthetase 46 293 9.8E-46 T 13-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 RAM_11830 08b7645f2f74db31cc640317d82ed5dd 363 SUPERFAMILY SSF48576 17 362 1.75E-69 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily RAM_09640 abdec7f8996862febc43294b3fe389e5 213 SUPERFAMILY SSF46689 12 76 3.54E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_09640 abdec7f8996862febc43294b3fe389e5 213 Pfam PF00440 Bacterial regulatory proteins, tetR family 25 71 5.6E-15 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_09640 abdec7f8996862febc43294b3fe389e5 213 Gene3D G3DSA:1.10.357.10 11 197 7.2E-25 T 13-10-2018 RAM_09640 abdec7f8996862febc43294b3fe389e5 213 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 46 69 3.2E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_09640 abdec7f8996862febc43294b3fe389e5 213 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 25 38 3.2E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_29505 11de95a921c2c9ded38ab81f37ffae24 314 SUPERFAMILY SSF161098 73 297 4.45E-61 T 13-10-2018 IPR035906 MetI-like superfamily RAM_29505 11de95a921c2c9ded38ab81f37ffae24 314 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 104 298 7.5E-18 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_29505 11de95a921c2c9ded38ab81f37ffae24 314 Gene3D G3DSA:1.10.3720.10 69 311 2.2E-68 T 13-10-2018 IPR035906 MetI-like superfamily RAM_32210 ab28251ef2837a91bb3443d90f325e9b 279 Pfam PF04012 PspA/IM30 family 3 241 2.7E-51 T 13-10-2018 IPR007157 PspA/IM30 RAM_39930 0492650459399a705d326deab072d8ec 144 Pfam PF10739 Protein of unknown function (DUF2550) 10 137 2.8E-44 T 13-10-2018 IPR019675 Protein of unknown function DUF2550 RAM_18680 da201f524e294745e1c211bcfbc34449 125 Gene3D G3DSA:2.30.30.40 55 115 1.5E-5 T 13-10-2018 RAM_38685 392e3e970b2c229573cc244e2da8a939 165 SUPERFAMILY SSF75304 123 161 5.63E-5 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RAM_41005 2a7565c5656443ad35d6027c2c2fa56d 294 SUPERFAMILY SSF89392 46 275 1.41E-9 T 13-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX RAM_41005 2a7565c5656443ad35d6027c2c2fa56d 294 Gene3D G3DSA:2.50.20.20 40 275 1.5E-6 T 13-10-2018 RAM_35935 0ec1d19fce756cdb30d35639d7642c8b 107 SUPERFAMILY SSF54909 3 106 2.57E-24 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_35935 0ec1d19fce756cdb30d35639d7642c8b 107 Gene3D G3DSA:3.30.70.1060 1 107 8.8E-29 T 13-10-2018 RAM_35935 0ec1d19fce756cdb30d35639d7642c8b 107 Pfam PF03795 YCII-related domain 1 105 2.0E-11 T 13-10-2018 IPR005545 YCII-related RAM_22790 e95d603335087bcf7e39930e88e873a7 409 Pfam PF09594 Glycosyltransferase family 87 71 302 1.3E-55 T 13-10-2018 IPR018584 Glycosyltransferase family 87 GO:0016758 RAM_40335 7f1463b23c219160dece0531bf379b17 234 Pfam PF06439 Domain of Unknown Function (DUF1080) 39 220 4.4E-21 T 13-10-2018 IPR010496 Domain of unknown function DUF1080 RAM_40335 7f1463b23c219160dece0531bf379b17 234 Gene3D G3DSA:2.60.120.560 37 223 7.0E-14 T 13-10-2018 RAM_43575 59446e8cb668ae983a420a8d94668452 128 Pfam PF00313 'Cold-shock' DNA-binding domain 3 63 2.9E-14 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RAM_43575 59446e8cb668ae983a420a8d94668452 128 Gene3D G3DSA:2.40.50.140 2 64 1.0E-17 T 13-10-2018 RAM_43575 59446e8cb668ae983a420a8d94668452 128 SUPERFAMILY SSF50249 2 65 4.65E-15 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RAM_43575 59446e8cb668ae983a420a8d94668452 128 PRINTS PR00050 Cold shock protein signature 4 19 6.2E-11 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RAM_43575 59446e8cb668ae983a420a8d94668452 128 PRINTS PR00050 Cold shock protein signature 38 56 6.2E-11 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RAM_43575 59446e8cb668ae983a420a8d94668452 128 PRINTS PR00050 Cold shock protein signature 24 33 6.2E-11 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RAM_43575 59446e8cb668ae983a420a8d94668452 128 SMART SM00357 3 65 1.5E-20 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 RAM_01995 7c8d2ae2617ffeb053bd1ae6f257c9ff 106 SUPERFAMILY SSF54909 1 99 1.33E-18 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_01995 7c8d2ae2617ffeb053bd1ae6f257c9ff 106 Pfam PF07978 NIPSNAP 6 99 1.6E-17 T 13-10-2018 IPR012577 NIPSNAP RAM_39565 5fdca8fb75f1c25560dd10bfc951dced 157 PIRSF PIRSF000239 1 155 3.0E-20 T 13-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 RAM_39565 5fdca8fb75f1c25560dd10bfc951dced 157 SUPERFAMILY SSF52833 4 153 1.06E-50 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RAM_39565 5fdca8fb75f1c25560dd10bfc951dced 157 Pfam PF00578 AhpC/TSA family 8 135 3.3E-40 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 RAM_39565 5fdca8fb75f1c25560dd10bfc951dced 157 Gene3D G3DSA:3.40.30.10 6 154 4.6E-51 T 13-10-2018 RAM_45370 90af1d5ce2bb58a7b169d97fadf3ddfe 88 SUPERFAMILY SSF52833 6 69 7.23E-12 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RAM_45370 90af1d5ce2bb58a7b169d97fadf3ddfe 88 Gene3D G3DSA:3.40.30.10 2 86 7.5E-16 T 13-10-2018 RAM_45370 90af1d5ce2bb58a7b169d97fadf3ddfe 88 Pfam PF00462 Glutaredoxin 6 63 1.7E-11 T 13-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 RAM_45295 51f2b380b093e5313d87b88772aa2e97 231 Gene3D G3DSA:3.90.79.10 25 203 4.4E-39 T 13-10-2018 RAM_45295 51f2b380b093e5313d87b88772aa2e97 231 Pfam PF00293 NUDIX domain 42 162 3.2E-14 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RAM_45295 51f2b380b093e5313d87b88772aa2e97 231 SUPERFAMILY SSF55811 30 200 5.15E-29 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RAM_20565 02bff062fc09ef7237f4adc1b86de614 268 PIRSF PIRSF006648 2 266 1.7E-57 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 RAM_20565 02bff062fc09ef7237f4adc1b86de614 268 Pfam PF01061 ABC-2 type transporter 20 224 2.8E-20 T 13-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 RAM_05450 9356ddb55a0d4d9236b0723b677ff12a 166 Pfam PF06210 Protein of unknown function (DUF1003) 40 140 9.9E-40 T 13-10-2018 IPR010406 Protein of unknown function DUF1003 RAM_24670 b601c92de3b6360a80bc54cd7c5f101f 219 Pfam PF14065 Protein of unknown function (DUF4255) 4 179 1.0E-44 T 13-10-2018 IPR025351 Protein of unknown function DUF4255 RAM_39130 c11e49834850ce523504cddc9c216aff 333 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 14 294 8.5E-59 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_39130 c11e49834850ce523504cddc9c216aff 333 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 130 154 4.2E-9 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_39130 c11e49834850ce523504cddc9c216aff 333 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 300 319 4.2E-9 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_39130 c11e49834850ce523504cddc9c216aff 333 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 180 198 4.2E-9 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_39130 c11e49834850ce523504cddc9c216aff 333 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 92 108 4.2E-9 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_39130 c11e49834850ce523504cddc9c216aff 333 Pfam PF02470 MlaD protein 41 114 1.8E-14 T 13-10-2018 IPR003399 Mce/MlaD RAM_02530 a748b19428f0f90eec482550712acdb0 158 PIRSF PIRSF005859 5 158 1.9E-41 T 13-10-2018 IPR004307 TspO/MBR-related protein GO:0016021 RAM_02530 a748b19428f0f90eec482550712acdb0 158 Pfam PF03073 TspO/MBR family 17 155 1.7E-40 T 13-10-2018 IPR004307 TspO/MBR-related protein GO:0016021 RAM_02530 a748b19428f0f90eec482550712acdb0 158 Gene3D G3DSA:1.20.1260.100 8 158 9.6E-43 T 13-10-2018 IPR038330 TspO/MBR-related superfamily RAM_28095 7d66ab000a35033527dc712b8d73d8e9 178 SUPERFAMILY SSF52540 10 172 1.1E-13 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_28095 7d66ab000a35033527dc712b8d73d8e9 178 Gene3D G3DSA:3.40.50.300 9 174 5.6E-32 T 13-10-2018 RAM_28095 7d66ab000a35033527dc712b8d73d8e9 178 Pfam PF13671 AAA domain 12 126 3.0E-7 T 13-10-2018 RAM_31325 59fc635df3437a2fc793bbac915816d5 308 Pfam PF12679 ABC-2 family transporter protein 54 306 5.2E-10 T 13-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 RAM_45025 1bc035e34737a2de7354579555c35897 442 SUPERFAMILY SSF48452 188 394 1.23E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_45025 1bc035e34737a2de7354579555c35897 442 Gene3D G3DSA:1.25.40.10 180 403 4.4E-8 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_36470 830e56211b8bde6831c0eec35a719874 209 Pfam PF01478 Type IV leader peptidase family 66 174 5.2E-8 T 13-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 RAM_21725 b75874764a8672d272e27eafcb1ff6ab 379 Pfam PF06081 Aromatic acid exporter family member 1 49 184 8.0E-8 T 13-10-2018 IPR010343 Aromatic acid exporter family member 1 RAM_09325 064f4f5a0dc05ea1312ee80879d659d2 343 SUPERFAMILY SSF53822 34 335 1.08E-57 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_09325 064f4f5a0dc05ea1312ee80879d659d2 343 Gene3D G3DSA:3.40.50.2300 46 323 1.4E-76 T 13-10-2018 RAM_09325 064f4f5a0dc05ea1312ee80879d659d2 343 Pfam PF13407 Periplasmic binding protein domain 41 298 1.2E-48 T 13-10-2018 IPR025997 Periplasmic binding protein RAM_09325 064f4f5a0dc05ea1312ee80879d659d2 343 Gene3D G3DSA:3.40.50.2300 137 341 1.4E-76 T 13-10-2018 RAM_33325 5fcbaf22810c3fce752a8b1ae8b38a11 124 Pfam PF03965 Penicillinase repressor 11 118 4.8E-26 T 13-10-2018 IPR005650 BlaI transcriptional regulatory family GO:0003677|GO:0045892 RAM_33325 5fcbaf22810c3fce752a8b1ae8b38a11 124 SUPERFAMILY SSF46785 11 118 1.79E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_33325 5fcbaf22810c3fce752a8b1ae8b38a11 124 Gene3D G3DSA:1.10.10.10 5 73 1.0E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_02350 504e8f209b775bade1cd49ee93fa4d2d 212 Gene3D G3DSA:1.10.10.10 53 212 3.1E-10 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_02350 504e8f209b775bade1cd49ee93fa4d2d 212 SMART SM00421 151 206 0.0055 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RAM_02350 504e8f209b775bade1cd49ee93fa4d2d 212 SUPERFAMILY SSF46894 157 212 2.99E-6 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAM_15200 7f0f9132017eca2c9017816f9a2758cb 161 Pfam PF10400 Virulence activator alpha C-term 81 159 4.8E-10 T 13-10-2018 IPR018309 Transcription regulator PadR, C-terminal RAM_15200 7f0f9132017eca2c9017816f9a2758cb 161 Gene3D G3DSA:1.10.10.10 1 74 1.7E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_15200 7f0f9132017eca2c9017816f9a2758cb 161 Pfam PF03551 Transcriptional regulator PadR-like family 2 68 2.0E-9 T 13-10-2018 IPR005149 Transcription regulator PadR, N-terminal RAM_15200 7f0f9132017eca2c9017816f9a2758cb 161 SUPERFAMILY SSF46785 1 159 1.32E-26 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RAM_31525 68e384ee14d6b0edfc0621c9ee841a6e 442 Pfam PF12307 Protein of unknown function (DUF3631) 253 437 1.2E-68 T 13-10-2018 IPR022081 Domain of unknown function DUF3631 RAM_47760 d4de143da19e8299c1d97e3a9c7a436c 220 Pfam PF08044 Domain of unknown function (DUF1707) 23 74 6.6E-19 T 13-10-2018 IPR012551 Protein of unknown function DUF1707 RAM_45270 432c01a32579bd4a32b635b24d479b48 163 Pfam PF07332 Putative Actinobacterial Holin-X, holin superfamily III 35 150 5.3E-32 T 13-10-2018 IPR009937 Putative Actinobacterial Holin-X, holin superfamily III RAM_24065 20f54b553cff4c9b7b64dafed7e0b199 115 Gene3D G3DSA:2.20.28.270 1 80 1.4E-37 T 13-10-2018 IPR038638 RbpA superfamily RAM_24065 20f54b553cff4c9b7b64dafed7e0b199 115 Pfam PF13397 RNA polymerase-binding protein 4 107 1.8E-41 T 13-10-2018 IPR025182 RNA polymerase-binding protein RbpA GO:0001000|GO:0045893 RAM_24065 20f54b553cff4c9b7b64dafed7e0b199 115 Hamap MF_01483 RNA polymerase-binding protein RbpA [rbpA]. 16 112 23.781 T 13-10-2018 IPR025182 RNA polymerase-binding protein RbpA GO:0001000|GO:0045893 RAM_39965 9207ce604632ef2d57d1b538a718aa16 89 PRINTS PR00124 ATP synthase C subunit signature 43 58 2.3E-14 T 13-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RAM_39965 9207ce604632ef2d57d1b538a718aa16 89 PRINTS PR00124 ATP synthase C subunit signature 60 85 2.3E-14 T 13-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RAM_39965 9207ce604632ef2d57d1b538a718aa16 89 PRINTS PR00124 ATP synthase C subunit signature 22 41 2.3E-14 T 13-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RAM_39965 9207ce604632ef2d57d1b538a718aa16 89 Gene3D G3DSA:1.20.20.10 21 86 4.1E-16 T 13-10-2018 IPR038662 F1F0 ATP synthase subunit C superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RAM_39965 9207ce604632ef2d57d1b538a718aa16 89 SUPERFAMILY SSF81333 23 84 1.96E-14 T 13-10-2018 IPR035921 F/V-ATP synthase subunit C superfamily RAM_39965 9207ce604632ef2d57d1b538a718aa16 89 Pfam PF00137 ATP synthase subunit C 23 83 2.6E-9 T 13-10-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 RAM_39965 9207ce604632ef2d57d1b538a718aa16 89 Hamap MF_01396 ATP synthase subunit c [atpH]. 20 85 13.085 T 13-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RAM_05010 c5a380bbfa174d35d9f017820744611b 282 Gene3D G3DSA:3.40.50.720 4 260 2.7E-67 T 13-10-2018 RAM_05010 c5a380bbfa174d35d9f017820744611b 282 Pfam PF13460 NAD(P)H-binding 6 176 2.8E-27 T 13-10-2018 IPR016040 NAD(P)-binding domain RAM_05010 c5a380bbfa174d35d9f017820744611b 282 SUPERFAMILY SSF51735 2 234 1.63E-54 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_05010 c5a380bbfa174d35d9f017820744611b 282 Gene3D G3DSA:3.90.25.10 130 261 2.7E-67 T 13-10-2018 RAM_26040 97f36ee88d8c596f25b923d257da82e0 60 Pfam PF05532 CsbD-like 3 54 7.4E-18 T 13-10-2018 IPR008462 CsbD-like domain RAM_26040 97f36ee88d8c596f25b923d257da82e0 60 SUPERFAMILY SSF69047 2 58 1.96E-10 T 13-10-2018 IPR036629 YjbJ superfamily RAM_26040 97f36ee88d8c596f25b923d257da82e0 60 Gene3D G3DSA:1.10.1470.10 1 59 4.3E-7 T 13-10-2018 IPR036629 YjbJ superfamily RAM_04850 e12e52edbbe2efde22ba8951856c7541 187 Gene3D G3DSA:3.40.50.360 5 182 2.1E-23 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RAM_04850 e12e52edbbe2efde22ba8951856c7541 187 Pfam PF03358 NADPH-dependent FMN reductase 7 149 3.2E-14 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 RAM_04850 e12e52edbbe2efde22ba8951856c7541 187 SUPERFAMILY SSF52218 6 180 3.88E-25 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RAM_47845 a3532aa21b722c66da3518a0566200ad 386 Pfam PF13449 Esterase-like activity of phytase 51 368 1.7E-77 T 13-10-2018 IPR027372 Phytase-like domain RAM_29240 22e2bcce23f2d63cf57bcc50f133fe6a 397 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 276 291 5.7E-15 T 13-10-2018 RAM_29240 22e2bcce23f2d63cf57bcc50f133fe6a 397 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 291 307 5.7E-15 T 13-10-2018 RAM_29240 22e2bcce23f2d63cf57bcc50f133fe6a 397 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 2 24 5.7E-15 T 13-10-2018 RAM_29240 22e2bcce23f2d63cf57bcc50f133fe6a 397 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 145 160 5.7E-15 T 13-10-2018 RAM_29240 22e2bcce23f2d63cf57bcc50f133fe6a 397 SUPERFAMILY SSF51905 2 366 5.02E-56 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_29240 22e2bcce23f2d63cf57bcc50f133fe6a 397 Gene3D G3DSA:3.50.50.60 5 336 6.9E-69 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_29240 22e2bcce23f2d63cf57bcc50f133fe6a 397 Gene3D G3DSA:3.30.9.50 38 266 6.9E-69 T 13-10-2018 RAM_29240 22e2bcce23f2d63cf57bcc50f133fe6a 397 Pfam PF01494 FAD binding domain 1 314 2.6E-19 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_07420 1e9a8383f4183a8162f4ff378217151b 311 SUPERFAMILY SSF51569 9 301 3.08E-67 T 13-10-2018 RAM_07420 1e9a8383f4183a8162f4ff378217151b 311 Pfam PF00682 HMGL-like 14 286 8.9E-48 T 13-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 RAM_07420 1e9a8383f4183a8162f4ff378217151b 311 Gene3D G3DSA:3.20.20.70 9 307 1.4E-122 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_01535 e47841cf618b7c6b09e2b619da3df256 221 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 39 210 4.2E-16 T 13-10-2018 IPR013830 SGNH hydrolase-type esterase domain RAM_01535 e47841cf618b7c6b09e2b619da3df256 221 SUPERFAMILY SSF52266 32 219 4.58E-25 T 13-10-2018 RAM_01535 e47841cf618b7c6b09e2b619da3df256 221 Gene3D G3DSA:3.40.50.1110 29 221 1.7E-20 T 13-10-2018 IPR036514 SGNH hydrolase superfamily RAM_24960 22ebab83335ef186b2325c309aa4723c 306 SUPERFAMILY SSF103481 198 285 1.96E-11 T 13-10-2018 RAM_24960 22ebab83335ef186b2325c309aa4723c 306 Pfam PF00892 EamA-like transporter family 10 138 9.7E-21 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RAM_24960 22ebab83335ef186b2325c309aa4723c 306 Pfam PF00892 EamA-like transporter family 153 284 5.5E-18 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RAM_24960 22ebab83335ef186b2325c309aa4723c 306 SUPERFAMILY SSF103481 39 138 7.06E-15 T 13-10-2018 RAM_44310 4c744b52b8f0b660060fe3aa1f8d3a4a 69 Pfam PF05800 Gas vesicle synthesis protein GvpO 3 68 5.9E-21 T 13-10-2018 IPR008634 Gas vesicle protein GvpO GO:0031412 RAM_13110 9af1430e0873c90f33d24b0bb729f3c0 384 Pfam PF03631 Virulence factor BrkB 31 290 4.2E-39 T 13-10-2018 IPR017039 Virulence factor BrkB RAM_47190 6177eb7c55cab25fb6115374c70d2a16 691 Pfam PF12229 Putative peptidoglycan binding domain 355 443 2.0E-9 T 13-10-2018 IPR022029 Putative peptidoglycan binding domain RAM_47190 6177eb7c55cab25fb6115374c70d2a16 691 Pfam PF04294 VanW like protein 487 616 7.8E-32 T 13-10-2018 IPR007391 Vancomycin resistance VanW RAM_03390 d38d6534e1e83e6c51aa4b801195683f 235 SUPERFAMILY SSF55073 44 123 1.73E-5 T 13-10-2018 IPR029787 Nucleotide cyclase RAM_25530 b968a7f31c5c986825992f33558b7b58 305 Pfam PF09995 Uncharacterized protein conserved in bacteria (DUF2236) 13 247 8.9E-55 T 13-10-2018 IPR018713 Domain of unknown function DUF2236 RAM_47740 7bb243073cf2ed9ce8c86d8fa84126d2 400 Pfam PF01594 AI-2E family transporter 33 355 5.4E-62 T 13-10-2018 IPR002549 Transmembrane protein TqsA-like RAM_09015 a7241cb7b091cee7504eb84a5a779083 345 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 17 304 9.4E-62 T 13-10-2018 IPR005693 Virulence factor Mce protein RAM_09015 a7241cb7b091cee7504eb84a5a779083 345 Pfam PF02470 MlaD protein 42 112 1.8E-10 T 13-10-2018 IPR003399 Mce/MlaD RAM_30500 2ee4925cc6bbf339cc82d760fdee1b84 434 Pfam PF07519 Tannase and feruloyl esterase 84 191 1.8E-7 T 13-10-2018 IPR011118 Tannase/feruloyl esterase MetaCyc: PWY-6784 RAM_30500 2ee4925cc6bbf339cc82d760fdee1b84 434 SUPERFAMILY SSF53474 101 379 7.54E-13 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_29305 22719b784018545ca400016932e0c4a3 127 Pfam PF07332 Putative Actinobacterial Holin-X, holin superfamily III 10 118 5.5E-27 T 13-10-2018 IPR009937 Putative Actinobacterial Holin-X, holin superfamily III RAM_10460 35d53227a6cbd09514faead7471b3fd3 512 SUPERFAMILY SSF51905 1 309 3.7E-33 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_10460 35d53227a6cbd09514faead7471b3fd3 512 Gene3D G3DSA:3.50.50.60 4 116 1.7E-14 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_10460 35d53227a6cbd09514faead7471b3fd3 512 Pfam PF13450 NAD(P)-binding Rossmann-like domain 8 52 1.7E-10 T 13-10-2018 RAM_21745 d8cd954bf8311ea0c10f82d2d69516f5 316 SUPERFAMILY SSF53756 7 279 2.51E-58 T 13-10-2018 RAM_21745 d8cd954bf8311ea0c10f82d2d69516f5 316 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 155 277 1.1E-29 T 13-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 RAM_21745 d8cd954bf8311ea0c10f82d2d69516f5 316 Gene3D G3DSA:3.40.50.2000 6 134 1.1E-8 T 13-10-2018 RAM_21745 d8cd954bf8311ea0c10f82d2d69516f5 316 Gene3D G3DSA:3.40.50.2000 149 310 7.0E-41 T 13-10-2018 RAM_00765 762b5bd9992021e0356a40ba815411a9 153 SUPERFAMILY SSF50475 11 148 6.25E-28 T 13-10-2018 RAM_00765 762b5bd9992021e0356a40ba815411a9 153 TIGRFAM TIGR03618 Rv1155_F420: PPOX class probable F420-dependent enzyme 17 141 7.4E-37 T 13-10-2018 IPR019920 F420-binding domain, putative RAM_00765 762b5bd9992021e0356a40ba815411a9 153 Gene3D G3DSA:2.30.110.10 9 142 3.7E-34 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_00765 762b5bd9992021e0356a40ba815411a9 153 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 15 96 3.4E-14 T 13-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RAM_10175 ea2a5783ea4db52daa48769ff08232fe 171 Pfam PF06114 IrrE N-terminal-like domain 61 115 9.2E-5 T 13-10-2018 IPR010359 IrrE N-terminal-like domain RAM_18035 b43ed94b53af27c76b46ffbf8f07072b 191 Gene3D G3DSA:1.10.3300.10 8 188 3.0E-15 T 13-10-2018 IPR023286 ABATE domain superfamily RAM_18035 b43ed94b53af27c76b46ffbf8f07072b 191 Pfam PF11706 CGNR zinc finger 143 186 2.7E-14 T 13-10-2018 IPR021005 Zinc finger, CGNR RAM_18035 b43ed94b53af27c76b46ffbf8f07072b 191 SUPERFAMILY SSF160904 16 185 8.11E-28 T 13-10-2018 RAM_41340 37e5fb4f3ec8c4d9cc3d3efcda87138c 155 Gene3D G3DSA:1.20.120.330 27 150 3.4E-6 T 13-10-2018 RAM_43570 8e66ef560f7f46191d5d84abe1dd1ee9 158 ProDom PD034580 PRECURSOR SIGNAL EXPORTED MB0899C RV0875C/MT0898 MLCB57.27C POSSIBLE 27 156 2.0E-5 T 13-10-2018 IPR024495 Protein of unknown function DUF2771 RAM_43570 8e66ef560f7f46191d5d84abe1dd1ee9 158 Pfam PF10969 Protein of unknown function (DUF2771) 21 155 1.2E-16 T 13-10-2018 IPR024495 Protein of unknown function DUF2771 RAM_02910 85d894f7dc887460e3b98bf78f4a15a9 263 SUPERFAMILY SSF53448 1 255 8.56E-43 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_02910 85d894f7dc887460e3b98bf78f4a15a9 263 Gene3D G3DSA:3.90.550.10 1 256 1.2E-46 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RAM_45415 a0b4a800f7239e960806ac6f305ec211 373 Pfam PF02374 Anion-transporting ATPase 16 288 1.5E-26 T 13-10-2018 IPR025723 Anion-transporting ATPase-like domain Reactome: R-HSA-381038 RAM_45415 a0b4a800f7239e960806ac6f305ec211 373 SUPERFAMILY SSF52540 16 289 5.63E-32 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_11065 8dc768d02cb561152603dff836c08059 319 SMART SM00860 221 310 5.7E-4 T 13-10-2018 IPR018958 Knr4/Smi1-like domain RAM_11065 8dc768d02cb561152603dff836c08059 319 SUPERFAMILY SSF160631 206 254 3.53E-7 T 13-10-2018 RAM_08125 23c64d4d6b450f3d5b681658b9c24b57 100 Gene3D G3DSA:3.30.70.930 1 99 1.3E-24 T 13-10-2018 IPR029756 MTH1187/YkoF-like RAM_08125 23c64d4d6b450f3d5b681658b9c24b57 100 SUPERFAMILY SSF89957 2 98 3.53E-28 T 13-10-2018 IPR029756 MTH1187/YkoF-like RAM_08125 23c64d4d6b450f3d5b681658b9c24b57 100 Pfam PF01910 Thiamine-binding protein 3 94 2.1E-28 T 13-10-2018 IPR002767 Thiamine-binding protein RAM_05650 9355ca03be3048e6528169b06290dbf0 105 Pfam PF16170 Domain of unknown function (DUF4873) 6 96 2.2E-35 T 13-10-2018 IPR032371 Domain of unknown function DUF4873 RAM_28100 480db5317975675bfeebd65bd7d6628c 108 Pfam PF08386 TAP-like protein 1 88 1.7E-16 T 13-10-2018 IPR013595 Peptidase S33 tripeptidyl aminopeptidase-like, C-terminal RAM_28100 480db5317975675bfeebd65bd7d6628c 108 SUPERFAMILY SSF53474 14 79 3.88E-6 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_28100 480db5317975675bfeebd65bd7d6628c 108 Gene3D G3DSA:3.40.50.1820 1 78 1.5E-6 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_26675 1539a5068ff917af1c20ebdd48b09e90 687 SUPERFAMILY SSF140459 111 282 1.6E-6 T 13-10-2018 RAM_26675 1539a5068ff917af1c20ebdd48b09e90 687 Gene3D G3DSA:1.20.1260.20 115 284 3.8E-7 T 13-10-2018 IPR038332 PPE superfamily RAM_27675 4b22127666a1b92c11c7b839eec302fc 110 Gene3D G3DSA:3.30.70.100 6 106 5.2E-12 T 13-10-2018 RAM_27675 4b22127666a1b92c11c7b839eec302fc 110 SUPERFAMILY SSF54909 6 100 2.48E-17 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_27675 4b22127666a1b92c11c7b839eec302fc 110 Pfam PF03992 Antibiotic biosynthesis monooxygenase 7 76 3.7E-8 T 13-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain RAM_47995 613fa2f2e3c36c68e4a461f9af5847cf 308 Pfam PF13614 AAA domain 45 223 1.7E-58 T 13-10-2018 IPR025669 AAA domain RAM_47995 613fa2f2e3c36c68e4a461f9af5847cf 308 SUPERFAMILY SSF52540 45 299 1.04E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_47995 613fa2f2e3c36c68e4a461f9af5847cf 308 Gene3D G3DSA:3.40.50.300 42 303 1.3E-78 T 13-10-2018 RAM_30340 49af614735267e5d54b816ed45a1aa8e 279 Gene3D G3DSA:1.10.443.10 44 264 1.9E-30 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 RAM_30340 49af614735267e5d54b816ed45a1aa8e 279 Pfam PF00589 Phage integrase family 73 248 9.5E-14 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RAM_30340 49af614735267e5d54b816ed45a1aa8e 279 SUPERFAMILY SSF56349 3 256 1.8E-31 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RAM_11580 1664a585639e5d1bd897bb7d8c4ffc13 113 SUPERFAMILY SSF54909 2 95 3.59E-23 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_11580 1664a585639e5d1bd897bb7d8c4ffc13 113 Pfam PF07045 Domain of unknown function (DUF1330) 14 95 4.5E-24 T 13-10-2018 IPR010753 Domain of unknown function DUF1330 RAM_11580 1664a585639e5d1bd897bb7d8c4ffc13 113 Gene3D G3DSA:3.30.70.100 2 97 2.5E-24 T 13-10-2018 RAM_07490 4964eda7d30cd9294df89ae463d21b77 375 Pfam PF05816 Toxic anion resistance protein (TelA) 53 368 6.8E-75 T 13-10-2018 IPR008863 Toxic anion resistance RAM_05020 17df8037ff95d7600be6c644938cbd38 172 Pfam PF04138 GtrA-like protein 24 154 3.9E-23 T 13-10-2018 IPR007267 GtrA-like protein GO:0000271|GO:0016021 RAM_40325 d375cb12c12fb509d4a04b544d7d90bf 169 Pfam PF03703 Bacterial PH domain 79 154 1.4E-15 T 13-10-2018 IPR005182 Domain of unknown function DUF304 RAM_15250 3b99fe34263a3e2ab5e4cce8be3a4af8 342 Gene3D G3DSA:3.20.20.100 15 342 4.0E-120 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_15250 3b99fe34263a3e2ab5e4cce8be3a4af8 342 SUPERFAMILY SSF51430 14 328 2.23E-89 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_15250 3b99fe34263a3e2ab5e4cce8be3a4af8 342 Pfam PF00248 Aldo/keto reductase family 28 327 1.1E-68 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain RAM_15250 3b99fe34263a3e2ab5e4cce8be3a4af8 342 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 126 136 6.8E-5 T 13-10-2018 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related Reactome: R-HSA-1296072 RAM_15250 3b99fe34263a3e2ab5e4cce8be3a4af8 342 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 270 282 6.8E-5 T 13-10-2018 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related Reactome: R-HSA-1296072 RAM_15250 3b99fe34263a3e2ab5e4cce8be3a4af8 342 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 283 296 6.8E-5 T 13-10-2018 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related Reactome: R-HSA-1296072 RAM_26550 b33530b3e7ec32474d8c2418e3d9c6f1 149 Gene3D G3DSA:3.30.565.10 21 144 9.7E-9 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_02075 791a87255f60e443c5b5c4142362b6c8 130 Pfam PF13115 YtkA-like 37 112 2.5E-6 T 13-10-2018 IPR032693 YtkA-like domain RAM_19475 670801bf8434b51dec998a6fa1fa159c 404 Pfam PF13458 Periplasmic binding protein 44 392 4.5E-42 T 13-10-2018 IPR028081 Leucine-binding protein domain RAM_19475 670801bf8434b51dec998a6fa1fa159c 404 Gene3D G3DSA:3.40.50.2300 218 378 2.9E-8 T 13-10-2018 RAM_19475 670801bf8434b51dec998a6fa1fa159c 404 SUPERFAMILY SSF53822 44 394 5.38E-41 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RAM_19475 670801bf8434b51dec998a6fa1fa159c 404 Gene3D G3DSA:3.40.50.2300 28 217 2.4E-21 T 13-10-2018 RAM_26590 c4b4ae24bd99a8b0fed9e9b06a425aae 101 Pfam PF12277 Protein of unknown function (DUF3618) 7 48 1.9E-9 T 13-10-2018 IPR022062 Protein of unknown function DUF3618 RAM_30455 53a192dee4d390a3461d47050cc94a3d 50 Pfam PF13459 4Fe-4S single cluster domain 1 46 1.7E-7 T 13-10-2018 RAM_30455 53a192dee4d390a3461d47050cc94a3d 50 Gene3D G3DSA:3.30.70.20 1 50 2.0E-10 T 13-10-2018 RAM_23885 27a1f9a312e41a3c9a4fb463688ff79a 144 Gene3D G3DSA:3.30.530.20 1 144 4.2E-40 T 13-10-2018 IPR023393 START-like domain superfamily RAM_23885 27a1f9a312e41a3c9a4fb463688ff79a 144 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 16 142 1.5E-25 T 13-10-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like RAM_23885 27a1f9a312e41a3c9a4fb463688ff79a 144 SUPERFAMILY SSF55961 6 143 1.49E-32 T 13-10-2018 RAM_35845 c5c21f88762cedd3fec83efa36ac0331 386 Gene3D G3DSA:3.40.50.720 5 161 1.0E-39 T 13-10-2018 RAM_35845 c5c21f88762cedd3fec83efa36ac0331 386 SUPERFAMILY SSF51735 6 169 2.61E-15 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_35845 c5c21f88762cedd3fec83efa36ac0331 386 Pfam PF03435 Saccharopine dehydrogenase NADP binding domain 6 134 1.5E-14 T 13-10-2018 IPR005097 Saccharopine dehydrogenase, NADP binding domain GO:0016491|GO:0055114 RAM_29565 6c05421e40779841f489e7c4f81b8f3b 202 Gene3D G3DSA:1.10.472.60 36 162 7.1E-34 T 13-10-2018 RAM_29565 6c05421e40779841f489e7c4f81b8f3b 202 Gene3D G3DSA:3.40.30.10 1 176 7.1E-34 T 13-10-2018 RAM_29565 6c05421e40779841f489e7c4f81b8f3b 202 SUPERFAMILY SSF52833 1 197 2.46E-20 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RAM_46360 e934df7025b118acd6fd505ed7fe0ad9 265 SUPERFAMILY SSF53335 7 247 3.34E-39 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_46360 e934df7025b118acd6fd505ed7fe0ad9 265 Gene3D G3DSA:3.40.50.150 1 264 3.6E-99 T 13-10-2018 RAM_46360 e934df7025b118acd6fd505ed7fe0ad9 265 Pfam PF04672 S-adenosyl methyltransferase 3 265 3.6E-83 T 13-10-2018 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type RAM_46360 e934df7025b118acd6fd505ed7fe0ad9 265 PIRSF PIRSF017393 1 265 1.8E-90 T 13-10-2018 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type RAM_10695 9906039668282b3a5225942725f5c292 395 Pfam PF13556 PucR C-terminal helix-turn-helix domain 327 384 2.9E-19 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain RAM_10695 9906039668282b3a5225942725f5c292 395 Gene3D G3DSA:1.10.10.2840 263 390 2.8E-40 T 13-10-2018 RAM_29310 fffdf23ce056a9c316b9b2bf89332fee 159 Pfam PF14325 Domain of unknown function (DUF4383) 16 139 1.5E-43 T 13-10-2018 IPR025492 Protein of unknown function DUF4383 RAM_18840 a2e6e3574523dbbe8a228a409989164b 108 Pfam PF00872 Transposase, Mutator family 2 63 7.6E-13 T 13-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 RAM_07525 bde89003501c6cf2f84ffe21cbb9ff50 350 Pfam PF02371 Transposase IS116/IS110/IS902 family 224 305 7.5E-19 T 13-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 RAM_07525 bde89003501c6cf2f84ffe21cbb9ff50 350 Pfam PF01548 Transposase 4 157 2.6E-29 T 13-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 RAM_03935 22f6010feb9712ed3da306551b2be977 131 ProDom PD032647 MB3446 ML0386 RV3412/MT3521 CGL0602 34 122 2.0E-28 T 13-10-2018 IPR035165 Protein of unknown function DUF5319 RAM_03935 22f6010feb9712ed3da306551b2be977 131 Pfam PF17252 Family of unknown function (DUF5319) 6 126 1.7E-50 T 13-10-2018 IPR035165 Protein of unknown function DUF5319 RAM_31975 4bd118b16e0d54213475c2a6f6d3f770 406 Pfam PF05977 Transmembrane secretion effector 14 390 6.9E-26 T 13-10-2018 IPR010290 Transmembrane secretion effector RAM_31975 4bd118b16e0d54213475c2a6f6d3f770 406 SUPERFAMILY SSF103473 12 402 1.57E-40 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_31975 4bd118b16e0d54213475c2a6f6d3f770 406 Gene3D G3DSA:1.20.1250.20 7 396 8.4E-34 T 13-10-2018 RAM_33990 9eb9da7a0c2c1faf527a4cba4df1870e 294 Pfam PF02562 PhoH-like protein 72 275 1.1E-95 T 13-10-2018 IPR003714 PhoH-like protein GO:0005524 RAM_33990 9eb9da7a0c2c1faf527a4cba4df1870e 294 SUPERFAMILY SSF52540 71 238 3.93E-39 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_33990 9eb9da7a0c2c1faf527a4cba4df1870e 294 Gene3D G3DSA:3.40.50.300 68 275 1.8E-77 T 13-10-2018 RAM_44325 df6e6cb039ad42b07074b92996bc9b98 240 Gene3D G3DSA:3.40.50.880 18 207 1.2E-10 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_44325 df6e6cb039ad42b07074b92996bc9b98 240 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 8 199 2.3E-34 T 13-10-2018 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 RAM_44325 df6e6cb039ad42b07074b92996bc9b98 240 SUPERFAMILY SSF52317 28 211 2.21E-22 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RAM_02955 222f4d9d5f599885562e01f39cd1611d 381 SUPERFAMILY SSF50939 38 299 1.01E-15 T 13-10-2018 IPR036278 Sialidase superfamily KEGG: 00511+3.2.1.18|KEGG: 00600+3.2.1.18|Reactome: R-HSA-1660662|Reactome: R-HSA-4085001 RAM_02955 222f4d9d5f599885562e01f39cd1611d 381 Gene3D G3DSA:2.120.10.10 18 363 7.9E-80 T 13-10-2018 RAM_19770 da89134162217fd93eb1e0ee39ddc6d5 168 TIGRFAM TIGR03618 Rv1155_F420: PPOX class probable F420-dependent enzyme 18 143 1.8E-29 T 13-10-2018 IPR019920 F420-binding domain, putative RAM_19770 da89134162217fd93eb1e0ee39ddc6d5 168 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 15 99 4.3E-18 T 13-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RAM_19770 da89134162217fd93eb1e0ee39ddc6d5 168 Gene3D G3DSA:2.30.110.10 10 156 2.4E-42 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_19770 da89134162217fd93eb1e0ee39ddc6d5 168 SUPERFAMILY SSF50475 10 148 1.4E-36 T 13-10-2018 RAM_36065 1a09d9ccbf1e1dcebe913377798556f9 292 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 276 4.8E-30 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 RAM_24660 99548036f5114ea581881f02763aa0ff 247 Pfam PF13699 Domain of unknown function (DUF4157) 80 157 3.6E-33 T 13-10-2018 IPR025295 Domain of unknown function DUF4157 RAM_03930 f378a05d12bed0a306010e3b8a40f1fd 312 Pfam PF16751 Anti-sigma-D factor RsdA to sigma factor binding region 28 73 4.5E-13 T 13-10-2018 IPR031928 Anti-sigma-D factor RsdA, sigma factor binding region RAM_20330 e974ac246610fe2e514d2be900c8a9d9 168 Pfam PF14014 Protein of unknown function (DUF4230) 4 160 9.7E-32 T 13-10-2018 IPR025324 Protein of unknown function DUF4230 RAM_37250 d8ddfbb3fd7c469695ef8153e2a30c26 305 SUPERFAMILY SSF82171 16 296 3.49E-22 T 13-10-2018 RAM_37250 d8ddfbb3fd7c469695ef8153e2a30c26 305 Gene3D G3DSA:2.120.10.30 13 299 1.8E-69 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RAM_27090 1370e3a2f119d85af527f2cba015435b 169 Gene3D G3DSA:3.40.50.720 21 160 6.6E-21 T 13-10-2018 RAM_27090 1370e3a2f119d85af527f2cba015435b 169 Pfam PF13478 XdhC Rossmann domain 21 153 1.4E-22 T 13-10-2018 IPR027051 XdhC Rossmann domain RAM_10980 a28b7a531d190d6a8a19317a42dd04c2 394 Pfam PF06772 Bacterial low temperature requirement A protein (LtrA) 27 382 4.4E-94 T 13-10-2018 IPR010640 Low temperature requirement A RAM_41935 2f17685b233d1ac7bdaa551c1422f8b1 413 TIGRFAM TIGR04267 mod_HExxH: HEXXH motif domain 13 378 3.4E-106 T 13-10-2018 IPR026337 HEXXH motif domain RAM_01455 c47cd81b5321057318708c83a9d5bd10 121 SUPERFAMILY SSF55874 30 118 1.66E-9 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_01455 c47cd81b5321057318708c83a9d5bd10 121 Pfam PF13581 Histidine kinase-like ATPase domain 4 113 1.1E-12 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RAM_01455 c47cd81b5321057318708c83a9d5bd10 121 Gene3D G3DSA:3.30.565.10 1 121 1.1E-29 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_19270 09839976e596b8f6cc4cd6c6be78448b 232 TIGRFAM TIGR00073 hypB: hydrogenase accessory protein HypB 20 229 3.4E-81 T 13-10-2018 IPR004392 Hydrogenase maturation factor HypB GO:0016151|GO:0051604 RAM_19270 09839976e596b8f6cc4cd6c6be78448b 232 PIRSF PIRSF005624 14 232 8.1E-90 T 13-10-2018 IPR012202 [NiFe]-hydrogenase/urease maturation factor, Ni2-binding GTPase GO:0003924|GO:0016151 RAM_19270 09839976e596b8f6cc4cd6c6be78448b 232 Gene3D G3DSA:3.40.50.300 30 232 5.9E-65 T 13-10-2018 RAM_19270 09839976e596b8f6cc4cd6c6be78448b 232 SUPERFAMILY SSF52540 26 228 5.79E-32 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_19270 09839976e596b8f6cc4cd6c6be78448b 232 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 50 209 5.7E-32 T 13-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain RAM_07840 c6feae6e089426dc3b060188374c0c1e 125 Pfam PF08570 Protein of unknown function (DUF1761) 3 122 3.6E-17 T 13-10-2018 IPR013879 Protein of unknown function DUF1761 RAM_04010 da449963bbca8392370d4779e0a7e4eb 65 Gene3D G3DSA:3.40.50.720 1 65 4.6E-18 T 13-10-2018 RAM_04010 da449963bbca8392370d4779e0a7e4eb 65 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 1 63 8.8E-14 T 13-10-2018 RAM_04010 da449963bbca8392370d4779e0a7e4eb 65 SUPERFAMILY SSF51735 1 63 5.98E-19 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_39070 436d7a8d69672940969807df2585f7b8 399 Pfam PF13556 PucR C-terminal helix-turn-helix domain 331 387 2.0E-17 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain RAM_39070 436d7a8d69672940969807df2585f7b8 399 Gene3D G3DSA:1.10.10.2840 263 392 1.7E-20 T 13-10-2018 RAM_17650 81a408c9c189e041929bca09b4b57825 84 Pfam PF14117 Domain of unknown function (DUF4287) 2 59 5.4E-23 T 13-10-2018 IPR025629 Protein of unknown function DUF4287 RAM_32325 b0cfc1e494643eab4f9d4862c80d81b1 411 TIGRFAM TIGR01197 nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 18 377 4.3E-84 T 13-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 RAM_32325 b0cfc1e494643eab4f9d4862c80d81b1 411 PRINTS PR00447 Natural resistance-associated macrophage protein signature 198 221 1.4E-27 T 13-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 RAM_32325 b0cfc1e494643eab4f9d4862c80d81b1 411 PRINTS PR00447 Natural resistance-associated macrophage protein signature 149 170 1.4E-27 T 13-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 RAM_32325 b0cfc1e494643eab4f9d4862c80d81b1 411 PRINTS PR00447 Natural resistance-associated macrophage protein signature 95 121 1.4E-27 T 13-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 RAM_32325 b0cfc1e494643eab4f9d4862c80d81b1 411 PRINTS PR00447 Natural resistance-associated macrophage protein signature 123 142 1.4E-27 T 13-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 RAM_32325 b0cfc1e494643eab4f9d4862c80d81b1 411 PRINTS PR00447 Natural resistance-associated macrophage protein signature 299 318 1.4E-27 T 13-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 RAM_32325 b0cfc1e494643eab4f9d4862c80d81b1 411 Hamap MF_00221 Divalent metal cation transporter MntH [mntH]. 7 409 33.442 T 13-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 RAM_32325 b0cfc1e494643eab4f9d4862c80d81b1 411 Pfam PF01566 Natural resistance-associated macrophage protein 36 383 5.3E-112 T 13-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 RAM_28595 5a69998236372acc46901e80254e8e24 74 Gene3D G3DSA:3.50.50.60 1 71 6.9E-27 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_28595 5a69998236372acc46901e80254e8e24 74 SUPERFAMILY SSF51905 1 61 3.02E-16 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_28595 5a69998236372acc46901e80254e8e24 74 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 31 49 2.0E-11 T 13-10-2018 RAM_28595 5a69998236372acc46901e80254e8e24 74 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 13 29 2.0E-11 T 13-10-2018 RAM_28595 5a69998236372acc46901e80254e8e24 74 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 49 65 2.0E-11 T 13-10-2018 RAM_28595 5a69998236372acc46901e80254e8e24 74 Pfam PF01494 FAD binding domain 1 58 1.5E-21 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RAM_44240 6b86fb69409d5a57b419ac7ac8999149 159 Pfam PF07617 Protein of unknown function (DUF1579) 12 156 1.9E-10 T 13-10-2018 IPR011473 Protein of unknown function DUF1579 RAM_46670 cc8808f73c0f3d78b759a1d2a1fd34c8 200 Pfam PF07510 Protein of unknown function (DUF1524) 101 194 1.7E-6 T 13-10-2018 IPR011089 Domain of unknown function DUF1524 RAM_30940 8abde5fe4b75cdce97cbeac8adaf7032 184 SUPERFAMILY SSF55961 9 152 2.07E-10 T 13-10-2018 RAM_18720 b321402cf3d85e1baaf544bd8da44924 227 Gene3D G3DSA:3.20.20.370 1 135 4.4E-35 T 13-10-2018 RAM_18720 b321402cf3d85e1baaf544bd8da44924 227 Pfam PF01522 Polysaccharide deacetylase 2 86 1.7E-16 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 RAM_18720 b321402cf3d85e1baaf544bd8da44924 227 SUPERFAMILY SSF88713 2 130 5.93E-32 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RAM_10580 0dfac518405fa2c5142b9de66b54c776 231 Gene3D G3DSA:1.10.150.240 20 84 7.2E-48 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 RAM_10580 0dfac518405fa2c5142b9de66b54c776 231 Gene3D G3DSA:3.40.50.1000 6 215 7.2E-48 T 13-10-2018 IPR023214 HAD superfamily RAM_10580 0dfac518405fa2c5142b9de66b54c776 231 SUPERFAMILY SSF56784 4 221 7.11E-29 T 13-10-2018 IPR036412 HAD-like superfamily RAM_10580 0dfac518405fa2c5142b9de66b54c776 231 Pfam PF12710 haloacid dehalogenase-like hydrolase 7 187 2.6E-16 T 13-10-2018 RAM_17705 ad1922ecb0f40519195d9c8b64ab9209 454 SUPERFAMILY SSF54373 293 399 1.31E-30 T 13-10-2018 RAM_17705 ad1922ecb0f40519195d9c8b64ab9209 454 PRINTS PR00757 Flavin-containing amine oxidase signature 296 315 3.6E-29 T 13-10-2018 IPR001613 Flavin amine oxidase GO:0016491|GO:0055114 RAM_17705 ad1922ecb0f40519195d9c8b64ab9209 454 PRINTS PR00757 Flavin-containing amine oxidase signature 5 24 3.6E-29 T 13-10-2018 IPR001613 Flavin amine oxidase GO:0016491|GO:0055114 RAM_17705 ad1922ecb0f40519195d9c8b64ab9209 454 PRINTS PR00757 Flavin-containing amine oxidase signature 380 399 3.6E-29 T 13-10-2018 IPR001613 Flavin amine oxidase GO:0016491|GO:0055114 RAM_17705 ad1922ecb0f40519195d9c8b64ab9209 454 PRINTS PR00757 Flavin-containing amine oxidase signature 432 449 3.6E-29 T 13-10-2018 IPR001613 Flavin amine oxidase GO:0016491|GO:0055114 RAM_17705 ad1922ecb0f40519195d9c8b64ab9209 454 PRINTS PR00757 Flavin-containing amine oxidase signature 200 222 3.6E-29 T 13-10-2018 IPR001613 Flavin amine oxidase GO:0016491|GO:0055114 RAM_17705 ad1922ecb0f40519195d9c8b64ab9209 454 PRINTS PR00757 Flavin-containing amine oxidase signature 401 423 3.6E-29 T 13-10-2018 IPR001613 Flavin amine oxidase GO:0016491|GO:0055114 RAM_17705 ad1922ecb0f40519195d9c8b64ab9209 454 SUPERFAMILY SSF51905 1 452 3.11E-64 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_17705 ad1922ecb0f40519195d9c8b64ab9209 454 Pfam PF01593 Flavin containing amine oxidoreductase 13 451 5.5E-65 T 13-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 RAM_17705 ad1922ecb0f40519195d9c8b64ab9209 454 Gene3D G3DSA:3.50.50.60 5 451 1.3E-155 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RAM_17705 ad1922ecb0f40519195d9c8b64ab9209 454 Gene3D G3DSA:3.90.660.10 41 402 1.3E-155 T 13-10-2018 RAM_00270 fb4e98469ccc17967e539c5db50c5671 495 Pfam PF01098 Cell cycle protein 91 460 5.3E-85 T 13-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RAM_02880 ca1b5b45ac39a2f601ade36b408e00d0 394 Pfam PF04230 Polysaccharide pyruvyl transferase 17 321 9.4E-19 T 13-10-2018 IPR007345 Polysaccharide pyruvyl transferase RAM_45015 389c596e8257d12cf7d13be0d842d18c 264 Gene3D G3DSA:1.10.260.40 12 75 1.4E-7 T 13-10-2018 RAM_45015 389c596e8257d12cf7d13be0d842d18c 264 SUPERFAMILY SSF47413 11 72 1.18E-8 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RAM_05040 c7de1de2cfa77749d9cc92d314b93f33 449 Pfam PF09594 Glycosyltransferase family 87 98 340 1.0E-41 T 13-10-2018 IPR018584 Glycosyltransferase family 87 GO:0016758 RAM_29070 0f214d8fa8fbeb07f01028122b33ae96 109 Gene3D G3DSA:3.40.50.720 8 106 7.8E-30 T 13-10-2018 RAM_29070 0f214d8fa8fbeb07f01028122b33ae96 109 Pfam PF05368 NmrA-like family 9 106 2.0E-25 T 13-10-2018 IPR008030 NmrA-like domain Reactome: R-HSA-70635 RAM_29070 0f214d8fa8fbeb07f01028122b33ae96 109 SUPERFAMILY SSF51735 6 107 1.25E-25 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_20810 87af7aaeee2d4e11332e1d41c9540d3a 357 Gene3D G3DSA:2.102.10.10 73 164 9.2E-16 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RAM_20810 87af7aaeee2d4e11332e1d41c9540d3a 357 Pfam PF00355 Rieske [2Fe-2S] domain 75 142 5.8E-9 T 13-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RAM_20810 87af7aaeee2d4e11332e1d41c9540d3a 357 SUPERFAMILY SSF50022 73 145 4.06E-16 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RAM_02310 36c7ca37141de08824ea1ef1f6e6e998 168 Pfam PF10698 Protein of unknown function (DUF2505) 6 164 6.5E-46 T 13-10-2018 IPR019639 Protein of unknown function DUF2505 RAM_02045 ba489599dc52ad47d345e06e1c4d0f56 202 Gene3D G3DSA:3.40.50.150 2 190 1.2E-48 T 13-10-2018 RAM_02045 ba489599dc52ad47d345e06e1c4d0f56 202 Pfam PF13649 Methyltransferase domain 44 134 5.0E-17 T 13-10-2018 RAM_02045 ba489599dc52ad47d345e06e1c4d0f56 202 SUPERFAMILY SSF53335 3 188 9.6E-32 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_04375 cbda1c4d4ff7758d0e9e23ad603b2d4a 363 Pfam PF02653 Branched-chain amino acid transport system / permease component 52 326 1.6E-32 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 RAM_21360 0cfb54db03ec49a37ffd6490345e6848 486 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 300 465 4.6E-16 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_21360 0cfb54db03ec49a37ffd6490345e6848 486 Gene3D G3DSA:3.60.40.10 253 471 1.6E-22 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RAM_27180 4a635e70dec4c826bdfce5fedde72b35 385 Pfam PF03773 Predicted permease 4 315 3.2E-81 T 13-10-2018 IPR005524 Predicted permease DUF318 RAM_18460 5d8532c2892b663942e7549ec0564d6a 453 SUPERFAMILY SSF56059 161 368 7.95E-22 T 13-10-2018 RAM_18460 5d8532c2892b663942e7549ec0564d6a 453 Pfam PF02655 ATP-grasp domain 192 346 3.0E-7 T 13-10-2018 IPR003806 ATP-grasp fold, DUF201-type GO:0005524|GO:0046872 RAM_18460 5d8532c2892b663942e7549ec0564d6a 453 Gene3D G3DSA:3.30.470.130 133 372 3.9E-13 T 13-10-2018 RAM_38275 4a0e337810b901be2c012e3a68c16ae9 401 Gene3D G3DSA:1.10.1740.10 4 69 2.0E-5 T 13-10-2018 RAM_38275 4a0e337810b901be2c012e3a68c16ae9 401 Pfam PF04542 Sigma-70 region 2 7 70 2.3E-8 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RAM_38275 4a0e337810b901be2c012e3a68c16ae9 401 Gene3D G3DSA:1.10.10.10 108 157 6.7E-8 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_38275 4a0e337810b901be2c012e3a68c16ae9 401 Pfam PF08281 Sigma-70, region 4 103 150 7.4E-10 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAM_38275 4a0e337810b901be2c012e3a68c16ae9 401 SUPERFAMILY SSF88659 97 154 6.11E-10 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RAM_38275 4a0e337810b901be2c012e3a68c16ae9 401 SUPERFAMILY SSF88946 6 82 1.02E-10 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RAM_39405 576cbbb1101caa92ac050ddd719c0e43 214 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 25 211 3.1E-30 T 13-10-2018 IPR028055 Membrane insertase YidC/Oxa1, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RAM_39405 576cbbb1101caa92ac050ddd719c0e43 214 Pfam PF02096 60Kd inner membrane protein 26 211 6.6E-28 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 RAM_19050 c685b736f0d4a266f3341063abdf3e10 547 Gene3D G3DSA:3.40.190.10 40 530 4.7E-139 T 13-10-2018 RAM_19050 c685b736f0d4a266f3341063abdf3e10 547 PIRSF PIRSF002741 13 532 3.6E-61 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RAM_19050 c685b736f0d4a266f3341063abdf3e10 547 Gene3D G3DSA:3.10.105.10 258 506 4.7E-139 T 13-10-2018 RAM_19050 c685b736f0d4a266f3341063abdf3e10 547 Gene3D G3DSA:3.90.76.10 57 161 4.7E-139 T 13-10-2018 RAM_19050 c685b736f0d4a266f3341063abdf3e10 547 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 69 440 6.8E-66 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain RAM_19050 c685b736f0d4a266f3341063abdf3e10 547 SUPERFAMILY SSF53850 24 526 6.6E-90 T 13-10-2018 RAM_22560 1a513f745e5b3a8e0145bd3565faa4dc 324 Gene3D G3DSA:1.10.3720.10 73 314 1.0E-62 T 13-10-2018 IPR035906 MetI-like superfamily RAM_22560 1a513f745e5b3a8e0145bd3565faa4dc 324 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 89 306 1.4E-17 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_22560 1a513f745e5b3a8e0145bd3565faa4dc 324 SUPERFAMILY SSF161098 77 305 1.06E-49 T 13-10-2018 IPR035906 MetI-like superfamily RAM_06920 245eec81db8ba1104d0e5d28f111562a 394 Pfam PF16483 Beta-1,3-glucanase 34 390 5.1E-102 T 13-10-2018 IPR032477 Beta-1,3-glucanase, N-terminal KEGG: 00500+3.2.1.39 RAM_06920 245eec81db8ba1104d0e5d28f111562a 394 Gene3D G3DSA:2.60.110.10 39 372 5.1E-117 T 13-10-2018 IPR037176 Osmotin/thaumatin-like superfamily RAM_06920 245eec81db8ba1104d0e5d28f111562a 394 Gene3D G3DSA:3.30.920.50 234 347 5.1E-117 T 13-10-2018 RAM_46330 20423c21a8f2c49089dc2aa30d44f9f1 138 Gene3D G3DSA:3.30.160.20 1 136 5.4E-34 T 13-10-2018 RAM_46330 20423c21a8f2c49089dc2aa30d44f9f1 138 SUPERFAMILY SSF75620 7 102 3.92E-11 T 13-10-2018 RAM_46330 20423c21a8f2c49089dc2aa30d44f9f1 138 Pfam PF00472 RF-1 domain 7 132 3.3E-23 T 13-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 RAM_03955 d0b73df3baf934b1f002c874feaf1e6b 64 Pfam PF04149 Domain of unknown function (DUF397) 8 60 1.3E-16 T 13-10-2018 IPR007278 Domain of unknown function DUF397 RAM_02195 ec4faffd92fbb6f40bdf1371f4b65c58 229 Gene3D G3DSA:1.20.120.20 63 218 7.4E-6 T 13-10-2018 RAM_02195 ec4faffd92fbb6f40bdf1371f4b65c58 229 ProDom PD082580 HEPARIN-BINDING HEMAGGLUTININ ADHESIN GLYCOPROTEIN DIRECT VIRULENCE SEQUENCING CELL ADHESION HOMOLOG 60 136 5.0E-6 T 13-10-2018 IPR020340 Heparin-binding haemagglutinin, bacteria GO:0007155|GO:0008201|GO:0009405|GO:0009986 RAM_10035 a7336948c7e829ab445b0740272ef23e 281 SUPERFAMILY SSF54593 144 261 2.04E-12 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_10035 a7336948c7e829ab445b0740272ef23e 281 SUPERFAMILY SSF54593 17 133 1.29E-12 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_10035 a7336948c7e829ab445b0740272ef23e 281 Gene3D G3DSA:3.10.180.10 13 134 2.7E-24 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_10035 a7336948c7e829ab445b0740272ef23e 281 Gene3D G3DSA:3.10.180.10 141 265 6.8E-22 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_39595 5568c22bee0a97f54aeb49e8f468a47a 206 SUPERFAMILY SSF144091 23 195 3.79E-26 T 13-10-2018 RAM_39595 5568c22bee0a97f54aeb49e8f468a47a 206 Gene3D G3DSA:1.20.1540.10 62 200 3.5E-13 T 13-10-2018 IPR035952 Rhomboid-like superfamily RAM_39595 5568c22bee0a97f54aeb49e8f468a47a 206 Pfam PF01694 Rhomboid family 62 195 2.1E-23 T 13-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 RAM_13230 8b44908f5dc9a5784f36f160d81df9e8 227 Pfam PF13399 LytR cell envelope-related transcriptional attenuator 88 172 8.5E-12 T 13-10-2018 IPR027381 Putative LytR/CpsA/Psr regulator, C-terminal domain RAM_43820 f186de9fb6809252c481158edac7c651 53 Pfam PF04149 Domain of unknown function (DUF397) 2 52 1.2E-19 T 13-10-2018 IPR007278 Domain of unknown function DUF397 RAM_04635 6df23f1498e88c7133d47b3328118344 139 Pfam PF14108 Domain of unknown function (DUF4281) 2 127 3.7E-34 T 13-10-2018 IPR025461 ABA DEFICIENT 4-like RAM_33925 dbbf6c6ba5129583c7d0f4de3e704a95 347 Pfam PF03773 Predicted permease 64 338 6.1E-46 T 13-10-2018 IPR005524 Predicted permease DUF318 RAM_27435 16dfb28645e54602680cf0cbf9cb6755 114 Pfam PF14330 Domain of unknown function (DUF4387) 6 101 7.7E-32 T 13-10-2018 IPR025496 Protein of unknown function DUF4387 RAM_09360 fdf0bdebd64ff1caa8b1b30e3092a517 98 Pfam PF02656 Domain of unknown function (DUF202) 6 65 7.9E-7 T 13-10-2018 IPR003807 Domain of unknown function DUF202 RAM_12910 743627d2fbdde9847611ba288741fe5d 188 Pfam PF03640 Secreted repeat of unknown function 127 167 1.9E-14 T 13-10-2018 IPR005297 Lipoprotein repeat RAM_12910 743627d2fbdde9847611ba288741fe5d 188 Pfam PF03640 Secreted repeat of unknown function 69 109 6.6E-11 T 13-10-2018 IPR005297 Lipoprotein repeat RAM_27295 3753901ee1c84b9235748c3611ca4327 132 Pfam PF06210 Protein of unknown function (DUF1003) 31 114 3.4E-16 T 13-10-2018 IPR010406 Protein of unknown function DUF1003 RAM_04435 7fd014fa48e4d7423f316b3181eafc6c 326 Gene3D G3DSA:3.40.50.1360 63 321 1.2E-58 T 13-10-2018 RAM_04435 7fd014fa48e4d7423f316b3181eafc6c 326 Pfam PF04198 Putative sugar-binding domain 70 317 1.2E-46 T 13-10-2018 IPR007324 Sugar-binding domain, putative GO:0030246 RAM_04435 7fd014fa48e4d7423f316b3181eafc6c 326 SUPERFAMILY SSF100950 71 317 3.93E-47 T 13-10-2018 IPR037171 NagB/RpiA transferase-like RAM_04435 7fd014fa48e4d7423f316b3181eafc6c 326 Gene3D G3DSA:1.10.10.10 2 60 2.2E-13 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RAM_30810 b4d64913caf793a97f769c74c676dfe4 300 Pfam PF02616 Segregation and condensation protein ScpA 55 275 1.5E-59 T 13-10-2018 IPR003768 Segregation and condensation protein A RAM_00600 0d1e521689fda7e713a9db12fae4fdbf 372 Gene3D G3DSA:3.40.50.150 189 365 2.4E-6 T 13-10-2018 RAM_35425 ca81360a6a44f74316f248d3da07258f 149 Pfam PF14016 Protein of unknown function (DUF4232) 15 143 2.5E-21 T 13-10-2018 IPR025326 Protein of unknown function DUF4232 RAM_00470 581679536775d940fc88357299c9cb28 173 Pfam PF04234 CopC domain 16 109 6.8E-23 T 13-10-2018 IPR007348 CopC domain GO:0005507|GO:0042597|GO:0046688 RAM_00470 581679536775d940fc88357299c9cb28 173 SUPERFAMILY SSF81296 15 110 1.61E-20 T 13-10-2018 IPR014756 Immunoglobulin E-set RAM_00470 581679536775d940fc88357299c9cb28 173 Gene3D G3DSA:2.60.40.1220 16 115 1.3E-21 T 13-10-2018 RAM_38870 79d308c7f079276ea9e50c7ee59c5cb5 303 PRINTS PR00412 Epoxide hydrolase signature 41 59 3.5E-9 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_38870 79d308c7f079276ea9e50c7ee59c5cb5 303 PRINTS PR00412 Epoxide hydrolase signature 269 291 3.5E-9 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_38870 79d308c7f079276ea9e50c7ee59c5cb5 303 PRINTS PR00412 Epoxide hydrolase signature 118 131 3.5E-9 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RAM_38870 79d308c7f079276ea9e50c7ee59c5cb5 303 Pfam PF00561 alpha/beta hydrolase fold 35 162 1.1E-19 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_38870 79d308c7f079276ea9e50c7ee59c5cb5 303 SUPERFAMILY SSF53474 14 293 1.29E-66 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_38870 79d308c7f079276ea9e50c7ee59c5cb5 303 Gene3D G3DSA:3.40.50.1820 13 293 2.5E-86 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_30535 cefd777da9a1d81836439b7cebaed85f 249 TIGRFAM TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase 8 248 2.2E-96 T 13-10-2018 IPR011294 3-hydroxybutyrate dehydrogenase GO:0003858|GO:0055114 RAM_30535 cefd777da9a1d81836439b7cebaed85f 249 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 131 159 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAM_30535 cefd777da9a1d81836439b7cebaed85f 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 210 230 1.5E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_30535 cefd777da9a1d81836439b7cebaed85f 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 71 82 1.5E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_30535 cefd777da9a1d81836439b7cebaed85f 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 182 1.5E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_30535 cefd777da9a1d81836439b7cebaed85f 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 118 134 1.5E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_30535 cefd777da9a1d81836439b7cebaed85f 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 144 163 1.5E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_30535 cefd777da9a1d81836439b7cebaed85f 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.5E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_30535 cefd777da9a1d81836439b7cebaed85f 249 SUPERFAMILY SSF51735 1 248 5.88E-74 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_30535 cefd777da9a1d81836439b7cebaed85f 249 Gene3D G3DSA:3.40.50.720 1 249 3.8E-76 T 13-10-2018 RAM_30535 cefd777da9a1d81836439b7cebaed85f 249 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 247 1.7E-49 T 13-10-2018 RAM_30535 cefd777da9a1d81836439b7cebaed85f 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 144 163 1.1E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_30535 cefd777da9a1d81836439b7cebaed85f 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 71 82 1.1E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_30535 cefd777da9a1d81836439b7cebaed85f 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 124 132 1.1E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_14065 8cf1d7aebc3dee122fc3fb55469f2518 367 SUPERFAMILY SSF56601 30 351 8.45E-77 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_14065 8cf1d7aebc3dee122fc3fb55469f2518 367 Gene3D G3DSA:3.40.710.10 28 367 1.8E-102 T 13-10-2018 RAM_14065 8cf1d7aebc3dee122fc3fb55469f2518 367 Pfam PF00144 Beta-lactamase 43 352 2.8E-60 T 13-10-2018 IPR001466 Beta-lactamase-related RAM_32150 93dca5051f97e5a32fd72145d230f1f1 424 Pfam PF01882 Protein of unknown function DUF58 201 280 1.9E-18 T 13-10-2018 IPR002881 Domain of unknown function DUF58 RAM_15310 eb08fbbca71b32f2a74fa7e4e845f0fe 196 Pfam PF03358 NADPH-dependent FMN reductase 7 152 2.9E-40 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 RAM_15310 eb08fbbca71b32f2a74fa7e4e845f0fe 196 Gene3D G3DSA:3.40.50.360 1 192 3.2E-53 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RAM_15310 eb08fbbca71b32f2a74fa7e4e845f0fe 196 SUPERFAMILY SSF52218 7 182 5.32E-41 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RAM_32335 6bf57f387c3a52c07e3f560969830c94 250 Pfam PF02511 Thymidylate synthase complementing protein 31 222 8.5E-54 T 13-10-2018 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00670+2.1.1.148|MetaCyc: PWY-6545 RAM_32335 6bf57f387c3a52c07e3f560969830c94 250 Hamap MF_01408 Flavin-dependent thymidylate synthase [thyX]. 7 238 26.294 T 13-10-2018 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00670+2.1.1.148|MetaCyc: PWY-6545 RAM_32335 6bf57f387c3a52c07e3f560969830c94 250 SUPERFAMILY SSF69796 32 235 1.31E-60 T 13-10-2018 IPR036098 Thymidylate synthase ThyX superfamily GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00670+2.1.1.148|MetaCyc: PWY-6545 RAM_32335 6bf57f387c3a52c07e3f560969830c94 250 TIGRFAM TIGR02170 thyX: thymidylate synthase, flavin-dependent 8 230 1.4E-59 T 13-10-2018 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00670+2.1.1.148|MetaCyc: PWY-6545 RAM_32335 6bf57f387c3a52c07e3f560969830c94 250 Gene3D G3DSA:3.30.1360.170 25 232 5.3E-61 T 13-10-2018 RAM_34260 e569f312ebf1f5fc58a31d4aef36aa42 148 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 13 91 1.2E-4 T 13-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RAM_34260 e569f312ebf1f5fc58a31d4aef36aa42 148 SUPERFAMILY SSF50475 13 146 1.32E-14 T 13-10-2018 RAM_34260 e569f312ebf1f5fc58a31d4aef36aa42 148 Gene3D G3DSA:2.30.110.10 6 148 8.9E-23 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_17995 d97f20fa1e61f263138466bdc39db2e0 545 PIRSF PIRSF006429 22 544 1.9E-159 T 13-10-2018 IPR024188 Glutamate synthase large subunit-like protein RAM_17995 d97f20fa1e61f263138466bdc39db2e0 545 SUPERFAMILY SSF51395 31 521 3.19E-124 T 13-10-2018 RAM_17995 d97f20fa1e61f263138466bdc39db2e0 545 Pfam PF01645 Conserved region in glutamate synthase 173 489 8.1E-83 T 13-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 RAM_17995 d97f20fa1e61f263138466bdc39db2e0 545 PIRSF PIRSF500060 25 543 1.1E-224 T 13-10-2018 IPR027283 Glutamate synthase large subunit-like protein, bacteria RAM_17995 d97f20fa1e61f263138466bdc39db2e0 545 Gene3D G3DSA:3.20.20.70 166 519 5.2E-102 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RAM_27015 bac2df2a3fd8c744c20401ec53429fe2 180 Pfam PF14081 Domain of unknown function (DUF4262) 31 153 4.8E-35 T 13-10-2018 IPR025358 Protein of unknown function DUF4262 RAM_10115 4a03581670cd823aa27707ea23ed3ef0 396 Gene3D G3DSA:3.40.190.10 207 388 4.0E-10 T 13-10-2018 RAM_43050 2a5a5b61dddcff3f1587b91e7db08b75 250 Pfam PF03746 LamB/YcsF family 1 238 2.5E-102 T 13-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 RAM_43050 2a5a5b61dddcff3f1587b91e7db08b75 250 SUPERFAMILY SSF88713 1 248 5.11E-97 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RAM_43050 2a5a5b61dddcff3f1587b91e7db08b75 250 Hamap MF_00691 UPF0271 protein YbgL [ybgL]. 1 243 43.86 T 13-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 RAM_43050 2a5a5b61dddcff3f1587b91e7db08b75 250 Gene3D G3DSA:3.20.20.370 1 248 5.9E-102 T 13-10-2018 RAM_29195 1afae55799a05f6e45f71dfdebbfd370 222 Pfam PF03779 SPW repeat 36 82 1.2E-13 T 13-10-2018 IPR005530 SPW repeat RAM_28425 96983b469eb6533a0590ded27db8359c 224 SMART SM00749 161 224 0.014 T 13-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria RAM_28425 96983b469eb6533a0590ded27db8359c 224 SMART SM00749 87 150 220.0 T 13-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria RAM_28425 96983b469eb6533a0590ded27db8359c 224 SMART SM00749 13 76 0.0016 T 13-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria RAM_28425 96983b469eb6533a0590ded27db8359c 224 Pfam PF04972 BON domain 9 75 4.4E-14 T 13-10-2018 IPR007055 BON domain RAM_28425 96983b469eb6533a0590ded27db8359c 224 Pfam PF04972 BON domain 83 151 1.7E-11 T 13-10-2018 IPR007055 BON domain RAM_28425 96983b469eb6533a0590ded27db8359c 224 Pfam PF04972 BON domain 159 222 1.5E-10 T 13-10-2018 IPR007055 BON domain RAM_28480 13c842c6d1aa182e89dae30dba2f3578 199 PRINTS PR00075 Fatty acid desaturase family 1 signature 71 91 2.8E-6 T 13-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 RAM_28480 13c842c6d1aa182e89dae30dba2f3578 199 PRINTS PR00075 Fatty acid desaturase family 1 signature 48 70 2.8E-6 T 13-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 RAM_28480 13c842c6d1aa182e89dae30dba2f3578 199 PRINTS PR00075 Fatty acid desaturase family 1 signature 108 137 2.8E-6 T 13-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 RAM_28480 13c842c6d1aa182e89dae30dba2f3578 199 Pfam PF00487 Fatty acid desaturase 54 197 2.3E-9 T 13-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 RAM_10525 e7eafd97e8bd5ade564ebc6284384387 36 Pfam PF04149 Domain of unknown function (DUF397) 7 35 2.5E-6 T 13-10-2018 IPR007278 Domain of unknown function DUF397 RAM_06395 540b19e07cb0872b4accfc7543ecd02c 224 Pfam PF13796 Putative sensor 16 199 9.7E-36 T 13-10-2018 IPR025828 Putative sensor domain RAM_03425 e5115d2b430d8117ce5a60206b46a1bf 93 SUPERFAMILY SSF82607 29 89 3.27E-5 T 13-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily RAM_46395 d155dd96d59eac09ff78663fee6ea73e 157 Pfam PF13936 Helix-turn-helix domain 1 41 5.1E-11 T 13-10-2018 IPR025246 Transposase IS30-like HTH domain RAM_18495 3aa021ff2322862a494e4a6b8aceee0d 320 Gene3D G3DSA:1.25.40.10 211 315 4.2E-8 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_18495 3aa021ff2322862a494e4a6b8aceee0d 320 Gene3D G3DSA:1.25.40.10 49 210 1.6E-9 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_14540 27c6e618e52f8bf57087611edd6db177 215 SUPERFAMILY SSF53137 79 206 1.27E-23 T 13-10-2018 RAM_14540 27c6e618e52f8bf57087611edd6db177 215 Gene3D G3DSA:3.30.420.60 81 203 1.4E-15 T 13-10-2018 RAM_21865 119ae94882e23187931f840913609f4a 424 Gene3D G3DSA:3.30.470.20 105 423 6.4E-34 T 13-10-2018 RAM_21865 119ae94882e23187931f840913609f4a 424 Pfam PF13535 ATP-grasp domain 135 295 5.5E-12 T 13-10-2018 RAM_21865 119ae94882e23187931f840913609f4a 424 SUPERFAMILY SSF56059 113 336 5.77E-31 T 13-10-2018 RAM_06710 424e4766fed70015c703906eedea11f6 193 Pfam PF09335 SNARE associated Golgi protein 37 152 3.7E-12 T 13-10-2018 IPR032816 SNARE associated Golgi protein RAM_13730 c81369c5b003f810629ffa0ccbb01e11 200 SUPERFAMILY SSF160387 90 189 2.09E-13 T 13-10-2018 RAM_13730 c81369c5b003f810629ffa0ccbb01e11 200 Gene3D G3DSA:2.40.10.490 1 196 1.7E-16 T 13-10-2018 RAM_13730 c81369c5b003f810629ffa0ccbb01e11 200 Pfam PF03243 Alkylmercury lyase 90 190 5.7E-11 T 13-10-2018 IPR004927 Alkylmercury lyase GO:0018836|GO:0046413 RAM_15020 1a33ec5608e934ffbf59223c752e8f13 251 Pfam PF10099 Anti-sigma-K factor rskA 53 244 1.1E-33 T 13-10-2018 IPR018764 Anti-sigma K factor RskA GO:0005886|GO:0016021 RAM_15020 1a33ec5608e934ffbf59223c752e8f13 251 Gene3D G3DSA:1.10.10.1320 1 66 1.4E-21 T 13-10-2018 RAM_05515 b388f28c2ab3ce73e510ecb04b576812 79 Pfam PF04024 PspC domain 22 78 1.2E-17 T 13-10-2018 IPR007168 Phage shock protein, PspC, N-terminal RAM_21400 a0bd35bc63f1a29c2fd69c62fda54940 113 Pfam PF13564 DoxX-like family 7 107 5.0E-17 T 13-10-2018 IPR032808 DoxX family RAM_21080 eea5bd23fbb45b8bddf4ae20590a2177 164 Gene3D G3DSA:3.30.1310.10 1 108 4.6E-5 T 13-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily RAM_21080 eea5bd23fbb45b8bddf4ae20590a2177 164 Pfam PF02575 YbaB/EbfC DNA-binding family 21 102 4.4E-9 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family RAM_21080 eea5bd23fbb45b8bddf4ae20590a2177 164 SUPERFAMILY SSF82607 21 101 5.23E-6 T 13-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily RAM_31125 33e75dc88835ce0b2c41d9889c10093c 582 Pfam PF09471 IgA Peptidase M64 33 289 8.0E-47 T 13-10-2018 IPR019026 Peptidase M64, IgA RAM_33890 762d79f1f90d588b871693fa5b7277e7 217 Gene3D G3DSA:2.40.260.10 57 216 6.7E-15 T 13-10-2018 IPR023365 Sortase domain superfamily RAM_33890 762d79f1f90d588b871693fa5b7277e7 217 SUPERFAMILY SSF63817 66 214 5.1E-11 T 13-10-2018 IPR023365 Sortase domain superfamily RAM_33890 762d79f1f90d588b871693fa5b7277e7 217 Pfam PF04203 Sortase family 114 214 6.4E-11 T 13-10-2018 IPR005754 Sortase family RAM_47545 1cd17ae9ca7a2db8e79e40289f554b31 599 Gene3D G3DSA:3.30.565.10 460 590 9.9E-24 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_47545 1cd17ae9ca7a2db8e79e40289f554b31 599 SUPERFAMILY SSF55874 491 589 3.54E-12 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAM_47545 1cd17ae9ca7a2db8e79e40289f554b31 599 Pfam PF07730 Histidine kinase 385 449 4.3E-14 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RAM_14900 a22b23c647da44675d17199c900b025b 221 Pfam PF06271 RDD family 44 173 7.7E-17 T 13-10-2018 IPR010432 RDD RAM_36765 e3c10d10337aa25f7d71b953b0c23ee8 147 Gene3D G3DSA:1.10.357.10 8 142 2.8E-23 T 13-10-2018 RAM_41905 1542b57f2ec95157cbe24a57732f965b 314 SUPERFAMILY SSF52540 58 97 7.78E-6 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_41905 1542b57f2ec95157cbe24a57732f965b 314 SUPERFAMILY SSF52540 25 234 3.64E-5 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAM_38900 096679226059cbb02c12afbedbad8500 358 Gene3D G3DSA:3.40.50.970 1 352 1.0E-107 T 13-10-2018 RAM_38900 096679226059cbb02c12afbedbad8500 358 TIGRFAM TIGR03181 PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 13 351 1.3E-128 T 13-10-2018 IPR017596 Pyruvate dehydrogenase E1 component subunit alpha/BCKADH E1-alpha KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 RAM_38900 096679226059cbb02c12afbedbad8500 358 Pfam PF00676 Dehydrogenase E1 component 41 308 2.5E-73 T 13-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 RAM_38900 096679226059cbb02c12afbedbad8500 358 SUPERFAMILY SSF52518 32 354 1.36E-89 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RAM_23640 6d38768e5d3e3f89ccd6dfa0a6ad66a9 98 SUPERFAMILY SSF51679 15 85 8.41E-5 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_44965 d0b92a7b1b2ca6c795818dcf30a02e23 151 Gene3D G3DSA:3.10.50.30 83 151 2.9E-11 T 13-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 RAM_44965 d0b92a7b1b2ca6c795818dcf30a02e23 151 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 84 147 5.0E-12 T 13-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 RAM_44965 d0b92a7b1b2ca6c795818dcf30a02e23 151 PIRSF PIRSF006092 6 151 1.0E-15 T 13-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 RAM_44965 d0b92a7b1b2ca6c795818dcf30a02e23 151 SUPERFAMILY SSF54534 83 147 7.98E-10 T 13-10-2018 RAM_34355 106dcb075e181002b3e74ccf401ce399 261 Gene3D G3DSA:1.20.1250.20 1 261 2.7E-30 T 13-10-2018 RAM_34355 106dcb075e181002b3e74ccf401ce399 261 SUPERFAMILY SSF103473 4 259 3.79E-33 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_34355 106dcb075e181002b3e74ccf401ce399 261 Pfam PF07690 Major Facilitator Superfamily 4 216 2.4E-17 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_34355 106dcb075e181002b3e74ccf401ce399 261 ProSitePatterns PS00216 Sugar transport proteins signature 1. 131 148 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RAM_21960 80b2fbc5d80fe25878da4a430453db5f 284 Pfam PF06224 Winged helix DNA-binding domain 29 187 1.4E-28 T 13-10-2018 IPR009351 Protein of unknown function DUF1006 RAM_16590 9d5cce272eb654983dd0af494e1d52a8 148 Pfam PF14325 Domain of unknown function (DUF4383) 11 134 3.1E-46 T 13-10-2018 IPR025492 Protein of unknown function DUF4383 RAM_39980 99ef463d4269f0bd0f46f10941306eac 385 Pfam PF00953 Glycosyl transferase family 4 91 257 2.2E-34 T 13-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 RAM_13490 96e0187f3ebc183d499edb77c3d997d3 220 Pfam PF09335 SNARE associated Golgi protein 59 176 1.0E-21 T 13-10-2018 IPR032816 SNARE associated Golgi protein RAM_10880 21b98808ba4d95572418bccab7441695 89 Pfam PF14452 Multiubiquitin 16 84 1.0E-13 T 13-10-2018 IPR027802 Multi-ubiquitin domain RAM_33950 cec3c77c36c1286b6353a853677e0d3c 366 Pfam PF06271 RDD family 78 203 1.6E-21 T 13-10-2018 IPR010432 RDD RAM_43595 86af0680388da29f6dd18180dc085a6c 322 Pfam PF00268 Ribonucleotide reductase, small chain 32 280 2.3E-12 T 13-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RAM_43595 86af0680388da29f6dd18180dc085a6c 322 SUPERFAMILY SSF47240 23 283 4.65E-50 T 13-10-2018 IPR009078 Ferritin-like superfamily RAM_43595 86af0680388da29f6dd18180dc085a6c 322 Gene3D G3DSA:1.10.620.20 4 295 3.7E-107 T 13-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 RAM_47085 32c441cf8f452604d32fa22c04e815ad 398 Pfam PF09995 Uncharacterized protein conserved in bacteria (DUF2236) 113 346 9.3E-40 T 13-10-2018 IPR018713 Domain of unknown function DUF2236 RAM_42100 5cb3566a3f5c1e22edc4b69d01d01db8 169 Pfam PF04417 Protein of unknown function (DUF501) 35 154 2.6E-35 T 13-10-2018 IPR007511 Protein of unknown function DUF501 RAM_28600 b326eca2c72744643f8c9d8e22249a10 156 Pfam PF03682 Uncharacterised protein family (UPF0158) 71 138 3.2E-10 T 13-10-2018 IPR005361 Uncharacterised protein family UPF0158 RAM_27190 c539953ccf7076b2f1f91f34cd4a332b 539 Pfam PF05787 Bacterial protein of unknown function (DUF839) 249 433 5.7E-5 T 13-10-2018 IPR008557 Protein of unknown function DUF839 RAM_30685 16e14ab49a23b6483b873ffb895e6542 142 SUPERFAMILY SSF56112 7 121 6.38E-6 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_43210 c95c816a6586f31cad98fd8484c56c5c 184 Gene3D G3DSA:3.10.490.10 12 178 8.6E-6 T 13-10-2018 RAM_28640 c28fc3306a3b7e1760d659f106890b80 127 SUPERFAMILY SSF48452 7 97 3.35E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_28640 c28fc3306a3b7e1760d659f106890b80 127 Gene3D G3DSA:1.25.40.10 3 101 4.6E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_11810 7084ee832f94b4345e76a5adb6eeebe7 173 SUPERFAMILY SSF160904 24 172 6.54E-29 T 13-10-2018 RAM_11810 7084ee832f94b4345e76a5adb6eeebe7 173 Pfam PF11706 CGNR zinc finger 134 172 2.3E-9 T 13-10-2018 IPR021005 Zinc finger, CGNR RAM_11810 7084ee832f94b4345e76a5adb6eeebe7 173 Gene3D G3DSA:1.10.3300.10 5 173 5.6E-40 T 13-10-2018 IPR023286 ABATE domain superfamily RAM_13465 ae76c65220b7c0cb4062255485ed86fd 305 TIGRFAM TIGR04222 near_uncomplex: TIGR04222 domain 15 238 3.2E-47 T 13-10-2018 IPR026467 Ser/Gly rich, Cys interspersed, C-terminal domain RAM_39440 6e70161def367d429eed642157d7658f 145 Pfam PF07681 DoxX 27 103 3.3E-7 T 13-10-2018 IPR032808 DoxX family RAM_15270 5fc2c6e1b1236619fdd744fc0da2c1c7 71 Pfam PF14013 MT0933-like antitoxin protein 14 56 2.9E-11 T 13-10-2018 IPR028037 Antitoxin Rv0909/MT0933 RAM_11755 433080adff8a6c60cb5a3d00629591c2 294 SUPERFAMILY SSF50494 70 285 3.93E-20 T 13-10-2018 IPR009003 Peptidase S1, PA clan RAM_11755 433080adff8a6c60cb5a3d00629591c2 294 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 114 119 - T 13-10-2018 IPR018114 Serine proteases, trypsin family, histidine active site GO:0004252|GO:0006508 RAM_11755 433080adff8a6c60cb5a3d00629591c2 294 Gene3D G3DSA:2.40.10.10 188 294 3.5E-33 T 13-10-2018 RAM_11755 433080adff8a6c60cb5a3d00629591c2 294 Gene3D G3DSA:2.40.10.10 79 187 6.3E-37 T 13-10-2018 RAM_10560 96e3d94baa8f0ce779317af2f37d07d0 686 SUPERFAMILY SSF55729 460 649 5.83E-5 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_10560 96e3d94baa8f0ce779317af2f37d07d0 686 Pfam PF09924 Uncharacterised conserved protein (DUF2156) 351 650 3.2E-87 T 13-10-2018 IPR024320 Phosphatidylglycerol lysyltransferase, C-terminal RAM_30095 b6a2ade8c77011cff8981a2256bcbacc 304 SUPERFAMILY SSF103481 46 144 1.7E-12 T 13-10-2018 RAM_30095 b6a2ade8c77011cff8981a2256bcbacc 304 SUPERFAMILY SSF103481 200 294 6.28E-12 T 13-10-2018 RAM_30095 b6a2ade8c77011cff8981a2256bcbacc 304 Pfam PF00892 EamA-like transporter family 17 143 4.1E-14 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RAM_30095 b6a2ade8c77011cff8981a2256bcbacc 304 Pfam PF00892 EamA-like transporter family 160 291 2.5E-12 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RAM_36120 9f74e2aa434b3034b68d9fb9f373f00d 466 SUPERFAMILY SSF54909 21 465 5.23E-90 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_36120 9f74e2aa434b3034b68d9fb9f373f00d 466 TIGRFAM TIGR01413 Dyp_perox_fam: Dyp-type peroxidase family 41 462 2.3E-30 T 13-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 RAM_35260 822aa02a9887fdf2bf87503b84333357 307 Pfam PF08012 Protein of unknown function (DUF1702) 2 298 3.1E-123 T 13-10-2018 IPR012964 Protein of unknown function DUF1702 RAM_38665 60fa7d5f8667d2d459277467e4fb7e7b 209 Gene3D G3DSA:3.40.50.150 5 194 1.5E-40 T 13-10-2018 RAM_38665 60fa7d5f8667d2d459277467e4fb7e7b 209 SUPERFAMILY SSF53335 5 208 3.31E-35 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_38665 60fa7d5f8667d2d459277467e4fb7e7b 209 Pfam PF13649 Methyltransferase domain 45 136 3.8E-19 T 13-10-2018 RAM_39350 d04fa6fd7661894fded5c4210f43a77e 162 Pfam PF13005 zinc-finger binding domain of transposase IS66 3 29 6.8E-8 T 13-10-2018 IPR024474 Zinc-finger binding domain of transposase IS66 RAM_39350 d04fa6fd7661894fded5c4210f43a77e 162 Pfam PF03050 Transposase IS66 family 46 138 1.9E-20 T 13-10-2018 IPR004291 Transposase, IS66 RAM_21325 bd24c4391dd90383b66b51f9c7dc8fa7 184 Gene3D G3DSA:1.20.120.520 1 142 6.3E-7 T 13-10-2018 RAM_21325 bd24c4391dd90383b66b51f9c7dc8fa7 184 Pfam PF01814 Hemerythrin HHE cation binding domain 9 124 1.5E-8 T 13-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 RAM_01655 4b3dd8e01f481baca109e3fe8d6c718a 293 SUPERFAMILY SSF56601 23 188 2.92E-16 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RAM_47510 a6e163901d9892b49271bbfca8bb3b32 249 Pfam PF12730 ABC-2 family transporter protein 3 175 1.9E-6 T 13-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 RAM_20530 5d28a52e823ce6064c02285898af18b5 856 Pfam PF02687 FtsX-like permease family 300 390 1.7E-8 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 RAM_20530 5d28a52e823ce6064c02285898af18b5 856 Pfam PF02687 FtsX-like permease family 758 848 4.3E-9 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 RAM_28585 b03fc15f51a660f537f37499924c8720 189 Pfam PF06197 Protein of unknown function (DUF998) 2 180 6.0E-16 T 13-10-2018 IPR009339 Protein of unknown function DUF998 RAM_15190 456220223f4f8c64719a6d5183beb79b 426 Pfam PF03055 Retinal pigment epithelial membrane protein 12 423 3.7E-100 T 13-10-2018 IPR004294 Carotenoid oxygenase GO:0016702|GO:0055114 RAM_17560 542efc62a28228218d4ad2237e3ef048 410 SUPERFAMILY SSF63825 137 335 6.54E-5 T 13-10-2018 RAM_02595 160be908be4540a7639f3f517f7ec41e 290 TIGRFAM TIGR00751 menA: 1,4-dihydroxy-2-naphthoate octaprenyltransferase 12 284 4.2E-92 T 13-10-2018 RAM_02595 160be908be4540a7639f3f517f7ec41e 290 PIRSF PIRSF005355 1 289 3.1E-82 T 13-10-2018 IPR026046 UbiA prenyltransferase domain containing protein 1 GO:0004659 Reactome: R-HSA-6806664 RAM_02595 160be908be4540a7639f3f517f7ec41e 290 Pfam PF01040 UbiA prenyltransferase family 20 250 2.6E-35 T 13-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 RAM_02595 160be908be4540a7639f3f517f7ec41e 290 Hamap MF_01937 1,4-dihydroxy-2-naphthoate octaprenyltransferase [menA]. 3 288 20.851 T 13-10-2018 IPR004657 1,4-dihydroxy-2-naphthoate octaprenyltransferase GO:0009234|GO:0016021|GO:0046428 KEGG: 00130+2.5.1.74|MetaCyc: PWY-5839|MetaCyc: PWY-5851|MetaCyc: PWY-5852|MetaCyc: PWY-5853|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 RAM_28360 7fbbf59e7ab4591b0a1e945b532a4013 385 SUPERFAMILY SSF53474 102 351 2.32E-14 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_28360 7fbbf59e7ab4591b0a1e945b532a4013 385 Gene3D G3DSA:3.40.50.1820 22 379 6.1E-59 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_03985 295a1e0982c6093ef67b7aa51d3f7110 201 SUPERFAMILY SSF144091 19 194 1.83E-20 T 13-10-2018 RAM_03985 295a1e0982c6093ef67b7aa51d3f7110 201 Gene3D G3DSA:1.20.1540.10 17 196 7.8E-19 T 13-10-2018 IPR035952 Rhomboid-like superfamily RAM_03985 295a1e0982c6093ef67b7aa51d3f7110 201 Pfam PF01694 Rhomboid family 57 192 1.6E-13 T 13-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 RAM_38675 e8f922f4aefc9c5d9574d237fec33730 159 Pfam PF11188 Protein of unknown function (DUF2975) 37 159 1.2E-30 T 13-10-2018 IPR021354 Protein of unknown function DUF2975 RAM_34985 7d15952565630c105f9b611d23d21d0d 162 Pfam PF17174 Domain of unknown function (DUF5130) 15 146 2.0E-37 T 13-10-2018 IPR033437 Protein of unknown function DUF5130 RAM_34985 7d15952565630c105f9b611d23d21d0d 162 Gene3D G3DSA:3.10.310.50 41 161 6.1E-9 T 13-10-2018 RAM_07685 32b52296d8fd3e09f79332bd85ec0acc 341 Pfam PF02653 Branched-chain amino acid transport system / permease component 61 325 1.3E-40 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 RAM_21855 e13c1592959da1deb26c2e7e66ab025b 175 Pfam PF07098 Protein of unknown function (DUF1360) 66 166 1.1E-34 T 13-10-2018 IPR010773 Mycobacterium phage PG1, Gp7 RAM_25865 6cfd27dc7e6d400a9accd38bd7aeeb40 250 Pfam PF09362 Domain of unknown function (DUF1996) 23 224 3.7E-41 T 13-10-2018 IPR018535 Domain of unknown function DUF1996 RAM_44595 c52c1a9159de37a9030d1818e53a6e2b 212 Gene3D G3DSA:2.60.120.10 95 176 9.4E-6 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_44595 c52c1a9159de37a9030d1818e53a6e2b 212 SUPERFAMILY SSF51182 65 185 1.91E-9 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RAM_28835 8165d3c23e1bc586943d3604be86dbb1 451 SUPERFAMILY SSF54909 13 447 5.54E-114 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_12340 b8d3cf997965f65f4fa343fd88a11ca9 263 Pfam PF02405 Permease MlaE 43 253 4.4E-66 T 13-10-2018 IPR030802 ABC transporter permease MalE GO:0043190 RAM_22240 5de5991052d0f7afe3efed7da2f9a526 252 Gene3D G3DSA:2.30.30.40 30 103 1.6E-6 T 13-10-2018 RAM_40835 4f86f356f4c63f366049d9ace85d38b8 293 Pfam PF12679 ABC-2 family transporter protein 3 291 3.1E-9 T 13-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 RAM_08490 933ac9594eb36773a5beca87c9939330 218 SUPERFAMILY SSF55021 4 71 1.33E-6 T 13-10-2018 RAM_44895 8b6686f77b2d6322643451a6cf436785 261 Pfam PF14011 EspG family 8 249 2.4E-66 T 13-10-2018 IPR025734 EspG family RAM_22000 843c42dbfd67dab3f8b2e44c3f78ca4e 229 Pfam PF13628 Domain of unknown function (DUF4142) 75 207 3.3E-18 T 13-10-2018 IPR025419 Domain of unknown function DUF4142 RAM_44890 acb8f2f15d8c53037318d89e31f54b14 272 Pfam PF14011 EspG family 7 261 3.8E-60 T 13-10-2018 IPR025734 EspG family RAM_34310 f95ce08b18de1322381e5445c51f9508 168 Pfam PF14015 Protein of unknown function (DUF4231) 33 126 3.1E-12 T 13-10-2018 IPR025325 Protein of unknown function DUF4231 RAM_46350 bd0f26202a1cf8388f1b83c0a06127a3 79 Pfam PF04149 Domain of unknown function (DUF397) 17 70 2.1E-19 T 13-10-2018 IPR007278 Domain of unknown function DUF397 RAM_14145 6e434ae14a4e14c93f65c5262818b2da 286 Pfam PF04116 Fatty acid hydroxylase superfamily 91 224 4.4E-28 T 13-10-2018 IPR006694 Fatty acid hydroxylase GO:0005506|GO:0008610|GO:0016491|GO:0055114 RAM_05395 c956bd79f322427d239b00161d110180 32 Pfam PF11314 Protein of unknown function (DUF3117) 1 30 1.1E-13 T 13-10-2018 IPR021465 Protein of unknown function DUF3117 RAM_40065 6e592c2898d010bcc056960809a1a4b4 112 Pfam PF12721 RIP homotypic interaction motif 85 109 2.5E-6 T 13-10-2018 IPR025735 RHIM domain Reactome: R-HSA-168927|Reactome: R-HSA-1810476|Reactome: R-HSA-2562578|Reactome: R-HSA-9013957|Reactome: R-HSA-937041 RAM_42225 f2359397b1881d50e07027b62311cfb9 162 Pfam PF09335 SNARE associated Golgi protein 36 156 3.8E-15 T 13-10-2018 IPR032816 SNARE associated Golgi protein RAM_16905 5c8c1ecb5a05f1fd46e9c396ffecf1fe 183 Pfam PF09990 Predicted membrane protein (DUF2231) 89 174 4.0E-6 T 13-10-2018 IPR019251 Domain of unknown function DUF2231, transmembrane RAM_15805 f053c51e3038b21721e68ba75223f43e 385 Gene3D G3DSA:1.20.1250.20 6 373 2.3E-13 T 13-10-2018 RAM_15805 f053c51e3038b21721e68ba75223f43e 385 SUPERFAMILY SSF103473 12 373 4.05E-17 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_05605 6e15e9391b46823eb709f87f0afc39d0 209 Pfam PF01914 MarC family integral membrane protein 10 204 1.3E-47 T 13-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 RAM_05605 6e15e9391b46823eb709f87f0afc39d0 209 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 10 199 8.7E-44 T 13-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 RAM_45965 e76a23e20a2fef0b81bab75cb1607517 71 Pfam PF05532 CsbD-like 3 51 9.9E-11 T 13-10-2018 IPR008462 CsbD-like domain RAM_45965 e76a23e20a2fef0b81bab75cb1607517 71 SUPERFAMILY SSF69047 6 55 2.88E-5 T 13-10-2018 IPR036629 YjbJ superfamily RAM_11795 39952362934af7e2df036cca38b9def0 69 Gene3D G3DSA:2.40.50.140 1 67 4.1E-5 T 13-10-2018 RAM_33965 4ea22a8cc96956530db50697e2efc1d4 139 Pfam PF04505 Interferon-induced transmembrane protein 54 120 1.3E-22 T 13-10-2018 IPR007593 CD225/Dispanin family GO:0016021 RAM_32045 0395879c7c0c337e5b09c61d076c271e 389 Gene3D G3DSA:1.20.1250.20 11 386 2.7E-41 T 13-10-2018 RAM_32045 0395879c7c0c337e5b09c61d076c271e 389 SUPERFAMILY SSF103473 11 385 3.53E-49 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_32045 0395879c7c0c337e5b09c61d076c271e 389 Pfam PF07690 Major Facilitator Superfamily 22 274 1.2E-22 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_43545 ff3848e7aec11a99322c464521eb6ede 75 Pfam PF10745 Protein of unknown function (DUF2530) 3 74 2.3E-28 T 13-10-2018 IPR019681 Protein of unknown function DUF2530 RAM_00465 de4c92368eafd9b63459d6527799e6c8 342 Pfam PF05425 Copper resistance protein D 231 334 1.4E-21 T 13-10-2018 IPR008457 Copper resistance protein D GO:0016021 RAM_37795 577bce99e9447a9f847c2b28d2464cad 356 Gene3D G3DSA:3.40.50.150 89 281 1.1E-19 T 13-10-2018 RAM_37795 577bce99e9447a9f847c2b28d2464cad 356 Pfam PF13489 Methyltransferase domain 115 268 1.6E-18 T 13-10-2018 RAM_37795 577bce99e9447a9f847c2b28d2464cad 356 SUPERFAMILY SSF53335 112 283 5.42E-24 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAM_16280 8b5afc5beb1ee5e83b6f8758eaa82e8f 337 Gene3D G3DSA:1.20.1630.10 39 304 1.0E-16 T 13-10-2018 RAM_16280 8b5afc5beb1ee5e83b6f8758eaa82e8f 337 Pfam PF03916 Polysulphide reductase, NrfD 52 216 9.9E-18 T 13-10-2018 IPR005614 NrfD family RAM_22995 6e5a03c4f22e26a4522116ab3f2c00be 310 Pfam PF00487 Fatty acid desaturase 53 269 2.2E-19 T 13-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 RAM_22995 6e5a03c4f22e26a4522116ab3f2c00be 310 PRINTS PR00075 Fatty acid desaturase family 1 signature 75 95 3.4E-16 T 13-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 RAM_22995 6e5a03c4f22e26a4522116ab3f2c00be 310 PRINTS PR00075 Fatty acid desaturase family 1 signature 212 233 3.4E-16 T 13-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 RAM_22995 6e5a03c4f22e26a4522116ab3f2c00be 310 PRINTS PR00075 Fatty acid desaturase family 1 signature 52 74 3.4E-16 T 13-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 RAM_22995 6e5a03c4f22e26a4522116ab3f2c00be 310 PRINTS PR00075 Fatty acid desaturase family 1 signature 255 269 3.4E-16 T 13-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 RAM_33125 069e18876d5c98ea22115e03329c7ab1 50 Pfam PF04075 F420H(2)-dependent quinone reductase 13 50 3.3E-6 T 13-10-2018 IPR004378 F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 RAM_33125 069e18876d5c98ea22115e03329c7ab1 50 Gene3D G3DSA:2.30.110.10 1 50 5.9E-14 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RAM_26035 f6c26a2e1cb1cd05ef9e82b6e5e0bdb9 421 Pfam PF00999 Sodium/hydrogen exchanger family 13 406 4.8E-32 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 RAM_08920 fc5eb14deb74f29da51ac4fecdd81db7 811 SUPERFAMILY SSF52129 1 196 1.33E-16 T 13-10-2018 IPR029030 Caspase-like domain superfamily RAM_08920 fc5eb14deb74f29da51ac4fecdd81db7 811 Pfam PF00656 Caspase domain 1 196 1.5E-9 T 13-10-2018 RAM_08920 fc5eb14deb74f29da51ac4fecdd81db7 811 Gene3D G3DSA:3.40.50.1460 1 240 2.2E-14 T 13-10-2018 RAM_23645 f6013ec8166ccd44d469570f71a584b2 200 Pfam PF14273 Domain of unknown function (DUF4360) 20 199 1.7E-65 T 13-10-2018 IPR025649 Protein of unknown function DUF4360 RAM_43365 ea53e68c176b31408b74f962c02847fd 99 Pfam PF01730 UreF 1 51 1.1E-5 T 13-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 RAM_10775 9a38a0e609015cb4c6ea5791b792379b 271 Pfam PF13814 Replication-relaxation 22 219 2.6E-48 T 13-10-2018 IPR025855 Plasmid replication-relaxation RAM_22445 f05113d24b3a28c44ad4399f9f798273 406 Pfam PF02653 Branched-chain amino acid transport system / permease component 53 394 6.5E-40 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 RAM_39305 f209e993e645f192d7a1084237c137cd 129 Pfam PF07883 Cupin domain 41 95 2.1E-11 T 13-10-2018 IPR013096 Cupin 2, conserved barrel RAM_39305 f209e993e645f192d7a1084237c137cd 129 Gene3D G3DSA:2.60.120.10 3 109 9.4E-33 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RAM_39305 f209e993e645f192d7a1084237c137cd 129 SUPERFAMILY SSF51182 2 113 1.84E-21 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RAM_26595 8c7d82714d91c132db868a30cc007dce 83 Pfam PF14019 Protein of unknown function (DUF4235) 6 82 4.0E-26 T 13-10-2018 IPR025329 Protein of unknown function DUF4235 RAM_07260 29fb3f74780467ae205838198f30da18 119 Pfam PF05331 Protein of unknown function (DUF742) 9 119 5.7E-34 T 13-10-2018 IPR007995 Protein of unknown function DUF742 RAM_12550 945139f88cff1582472658fcc18c3cda 221 TIGRFAM TIGR02453 TIGR02453: TIGR02453 family protein 7 211 2.5E-40 T 13-10-2018 IPR012808 Conserved hypothetical protein CHP02453 RAM_12550 945139f88cff1582472658fcc18c3cda 221 PIRSF PIRSF028451 2 216 4.8E-38 T 13-10-2018 IPR015996 Uncharacterised conserved protein UCP028451 RAM_12550 945139f88cff1582472658fcc18c3cda 221 Pfam PF09365 Conserved hypothetical protein (DUF2461) 10 208 2.4E-51 T 13-10-2018 IPR012808 Conserved hypothetical protein CHP02453 RAM_29790 e94de1b12570d6d16fbd8ebf430914ed 526 TIGRFAM TIGR02547 casA_cse1: CRISPR type I-E/ECOLI-associated protein CasA/Cse1 6 481 1.4E-55 T 13-10-2018 IPR013381 CRISPR-associated protein Cse1 RAM_29790 e94de1b12570d6d16fbd8ebf430914ed 526 Pfam PF09481 CRISPR-associated protein Cse1 (CRISPR_cse1) 6 476 4.3E-109 T 13-10-2018 IPR013381 CRISPR-associated protein Cse1 RAM_47460 f14f610126a4f3c616b4e5abb193145e 234 SUPERFAMILY SSF69318 33 215 4.84E-8 T 13-10-2018 RAM_18600 e688af1af178c284f873978d699fd1b8 256 Pfam PF12730 ABC-2 family transporter protein 3 175 3.0E-6 T 13-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 RAM_24645 836b281c0710e44337918272c7ec7133 147 TIGRFAM TIGR02241 TIGR02241: conserved hypothetical phage tail region protein 9 146 2.3E-34 T 13-10-2018 IPR011747 Conserved hypothetical protein CHP02241 RAM_24645 836b281c0710e44337918272c7ec7133 147 Pfam PF06841 T4-like virus tail tube protein gp19 12 145 7.1E-32 T 13-10-2018 IPR010667 Bacteriophage T4, Gp19, tail tube GO:0005198 RAM_10505 6869c401f89b5d1a81ae8592b7b47b08 248 Pfam PF03883 Peroxide stress protein YaaA 2 228 3.6E-36 T 13-10-2018 IPR005583 Peroxide stress protein YaaA RAM_35205 266d7ae88f9f1ea4ae5d28aa932f4245 343 SUPERFAMILY SSF51735 1 253 5.79E-53 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_35205 266d7ae88f9f1ea4ae5d28aa932f4245 343 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 98 114 1.9E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_35205 266d7ae88f9f1ea4ae5d28aa932f4245 343 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 154 1.9E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_35205 266d7ae88f9f1ea4ae5d28aa932f4245 343 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 61 72 1.9E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_35205 266d7ae88f9f1ea4ae5d28aa932f4245 343 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 2 19 1.9E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RAM_35205 266d7ae88f9f1ea4ae5d28aa932f4245 343 Gene3D G3DSA:3.40.50.720 1 322 5.9E-71 T 13-10-2018 RAM_35205 266d7ae88f9f1ea4ae5d28aa932f4245 343 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 171 4.3E-29 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 RAM_20015 688d6fe900a61e49b0a06f44e9ab3746 196 Pfam PF10517 Electron transfer DM13 87 191 1.1E-28 T 13-10-2018 IPR019545 DM13 domain RAM_17915 93bc213c0ce041bd2d7d5ad8ec2266d5 103 Gene3D G3DSA:3.90.180.10 42 97 2.3E-7 T 13-10-2018 RAM_17915 93bc213c0ce041bd2d7d5ad8ec2266d5 103 Pfam PF13602 Zinc-binding dehydrogenase 44 97 1.7E-6 T 13-10-2018 RAM_29025 1a5d98af2adb201b880f0b88bef5a086 125 Pfam PF01609 Transposase DDE domain 27 108 3.7E-10 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 RAM_06635 66958b05168b8df7a6b1312c49da76d9 316 Pfam PF02653 Branched-chain amino acid transport system / permease component 48 307 2.3E-41 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 RAM_32565 b4f7c9116264d7f2fd2c5284b23fdcee 235 Pfam PF13398 Peptidase M50B-like 24 227 1.9E-38 T 13-10-2018 RAM_32700 6a6c0b9d358c9b8af5d44b287603e247 322 PIRSF PIRSF026166 1 320 1.1E-122 T 13-10-2018 IPR016833 Putative sodium bile acid cotransporter RAM_32700 6a6c0b9d358c9b8af5d44b287603e247 322 Gene3D G3DSA:1.20.1530.20 2 316 4.0E-36 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily RAM_32700 6a6c0b9d358c9b8af5d44b287603e247 322 Pfam PF13593 SBF-like CPA transporter family (DUF4137) 7 314 1.2E-94 T 13-10-2018 IPR016833 Putative sodium bile acid cotransporter RAM_38125 3a795fc97000f6b4d074115c63d9c598 276 SUPERFAMILY SSF161098 3 276 8.69E-74 T 13-10-2018 IPR035906 MetI-like superfamily RAM_38125 3a795fc97000f6b4d074115c63d9c598 276 Gene3D G3DSA:1.10.3720.10 2 263 5.6E-65 T 13-10-2018 IPR035906 MetI-like superfamily RAM_38125 3a795fc97000f6b4d074115c63d9c598 276 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 91 268 1.6E-20 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RAM_25300 602e48db9f627b649d482d1db0783b5f 209 Pfam PF12079 Protein of unknown function (DUF3558) 18 204 8.8E-30 T 13-10-2018 IPR024520 Protein of unknown function DUF3558 RAM_34545 2a6e4b86521d73a92608c3700df329dd 479 Pfam PF03055 Retinal pigment epithelial membrane protein 10 476 1.6E-105 T 13-10-2018 IPR004294 Carotenoid oxygenase GO:0016702|GO:0055114 RAM_47145 a68c1ffd3044a07bc7583b45fecea46f 208 Pfam PF04892 VanZ like family 50 180 2.1E-21 T 13-10-2018 IPR006976 VanZ-like RAM_37820 585ec02c39aee37fc95233fcc6928bc7 177 Pfam PF00156 Phosphoribosyl transferase domain 40 158 4.1E-11 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 RAM_37820 585ec02c39aee37fc95233fcc6928bc7 177 Gene3D G3DSA:3.40.50.2020 3 177 4.4E-34 T 13-10-2018 RAM_37820 585ec02c39aee37fc95233fcc6928bc7 177 SUPERFAMILY SSF53271 19 156 4.12E-24 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like RAM_44070 86326b9e3b01dae11e3def01e343e760 219 Pfam PF11361 Protein of unknown function (DUF3159) 13 199 9.9E-49 T 13-10-2018 IPR016566 Uncharacterised conserved protein UCP010219 RAM_08545 db3cc5cb66cc7d6c7f08af4d3a36cd70 191 Pfam PF07681 DoxX 35 120 3.3E-14 T 13-10-2018 IPR032808 DoxX family RAM_30090 a6b3c7433e228a5180b637ba5ab83f9d 298 Gene3D G3DSA:3.40.50.720 2 291 2.7E-46 T 13-10-2018 RAM_30090 a6b3c7433e228a5180b637ba5ab83f9d 298 SUPERFAMILY SSF51735 1 277 7.43E-50 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RAM_30090 a6b3c7433e228a5180b637ba5ab83f9d 298 Pfam PF13460 NAD(P)H-binding 7 191 1.3E-17 T 13-10-2018 IPR016040 NAD(P)-binding domain RAM_33960 306ab656eb7da80366b3829613230e61 115 Pfam PF04505 Interferon-induced transmembrane protein 29 96 8.8E-22 T 13-10-2018 IPR007593 CD225/Dispanin family GO:0016021 RAM_44175 0c6caf09fad94daa94731979fc22a4cd 126 Gene3D G3DSA:3.10.180.10 2 124 2.2E-19 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_44175 0c6caf09fad94daa94731979fc22a4cd 126 SUPERFAMILY SSF54593 9 125 3.76E-17 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_16545 025f252a36b29d02257dac900c34c3f3 336 Pfam PF01594 AI-2E family transporter 27 325 5.7E-45 T 13-10-2018 IPR002549 Transmembrane protein TqsA-like RAM_12590 47ea6b757f10a020082c3baa65f1631b 299 Gene3D G3DSA:1.20.140.150 27 196 4.4E-6 T 13-10-2018 RAM_41185 a35f6008becee3d4166bc7a9721ebd60 101 Pfam PF12005 Protein of unknown function (DUF3499) 1 98 8.0E-38 T 13-10-2018 IPR021888 Protein of unknown function DUF3499 RAM_39145 4a500e5a1551d403535455920818418f 271 Pfam PF02405 Permease MlaE 54 258 1.0E-58 T 13-10-2018 IPR030802 ABC transporter permease MalE GO:0043190 RAM_31780 fe9c7ceb6d8536f3007bbd6311a39d55 220 Pfam PF10067 Predicted membrane protein (DUF2306) 54 202 8.2E-41 T 13-10-2018 IPR018750 Protein of unknown function DUF2306, membrane RAM_17020 a98140ae50990375d3bcf3ce59427ae4 241 Gene3D G3DSA:3.40.50.1820 1 241 3.8E-39 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_17020 a98140ae50990375d3bcf3ce59427ae4 241 Pfam PF00561 alpha/beta hydrolase fold 22 110 1.4E-18 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RAM_17020 a98140ae50990375d3bcf3ce59427ae4 241 SUPERFAMILY SSF53474 8 235 1.04E-41 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_31270 2612851adc95a97a89ed9f94be63aefb 157 Pfam PF05423 Mycobacterium membrane protein 29 157 3.9E-10 T 13-10-2018 IPR008693 Transport accessory protein MmpS RAM_31270 2612851adc95a97a89ed9f94be63aefb 157 Gene3D G3DSA:2.60.40.2880 68 157 9.6E-12 T 13-10-2018 IPR038468 Transport accessory protein MmpS, soluble domain superfamily RAM_23055 281abdf39c272d4eb3a9f9c5d30a1717 365 Pfam PF01699 Sodium/calcium exchanger protein 222 363 5.3E-12 T 13-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 RAM_23055 281abdf39c272d4eb3a9f9c5d30a1717 365 Pfam PF01699 Sodium/calcium exchanger protein 37 188 2.6E-13 T 13-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 RAM_12175 8e44fa7032541316278c3fcd0d69f1c7 121 Pfam PF03477 ATP cone domain 4 89 2.8E-13 T 13-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 RAM_12175 8e44fa7032541316278c3fcd0d69f1c7 121 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 107 49.947 T 13-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 RAM_31545 93e0c95ed50c5cc77f8243f23c02d80b 296 SUPERFAMILY SSF52402 4 182 1.99E-6 T 13-10-2018 RAM_31545 93e0c95ed50c5cc77f8243f23c02d80b 296 Gene3D G3DSA:3.40.50.620 2 178 5.8E-12 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAM_25845 000ae3edda45ff2b95b9a83dd365ac32 329 Gene3D G3DSA:3.40.190.10 31 304 4.0E-66 T 13-10-2018 RAM_25845 000ae3edda45ff2b95b9a83dd365ac32 329 SUPERFAMILY SSF53850 28 257 3.04E-36 T 13-10-2018 RAM_25845 000ae3edda45ff2b95b9a83dd365ac32 329 Gene3D G3DSA:3.40.190.10 110 213 4.0E-66 T 13-10-2018 RAM_25845 000ae3edda45ff2b95b9a83dd365ac32 329 Pfam PF09084 NMT1/THI5 like 40 252 8.8E-49 T 13-10-2018 IPR015168 SsuA/THI5-like RAM_44295 98710ba41c1dbfa47310b1c805a95365 95 Pfam PF00741 Gas vesicle protein 50 87 6.7E-13 T 13-10-2018 IPR000638 Gas vesicle protein GvpA GO:0005198|GO:0012506 RAM_42870 9baf8e68c2124834b39df01a025c7175 339 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 7 296 2.0E-27 T 13-10-2018 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD RAM_44615 6ac21b184d2e30bd6eb09131885c62b0 408 Pfam PF04286 Protein of unknown function (DUF445) 23 135 7.5E-9 T 13-10-2018 IPR007383 Protein of unknown function DUF445 RAM_20270 d40e4f0cf8a78bb535acec0b65e5e2e6 332 Pfam PF02653 Branched-chain amino acid transport system / permease component 54 319 1.5E-45 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 RAM_43490 b3c19aa75c9f16398880d66c406bf7b3 203 Pfam PF10801 Protein of unknown function (DUF2537) 120 200 2.5E-25 T 13-10-2018 IPR024244 Protein of unknown function DUF2537 RAM_25200 60107df9f2a37e487e1f0daf35384672 314 Pfam PF01882 Protein of unknown function DUF58 53 137 2.1E-17 T 13-10-2018 IPR002881 Domain of unknown function DUF58 RAM_27665 ac9046cec8a2f3f213d04ea1fecb4977 145 Pfam PF08592 Domain of unknown function (DUF1772) 18 140 2.3E-13 T 13-10-2018 RAM_38225 e47a727c0b150273f9a571e24a55d0b6 206 SUPERFAMILY SSF46689 3 74 7.18E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RAM_38225 e47a727c0b150273f9a571e24a55d0b6 206 Gene3D G3DSA:1.10.357.10 3 202 6.9E-31 T 13-10-2018 RAM_38225 e47a727c0b150273f9a571e24a55d0b6 206 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 59 1.4E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RAM_01125 9c8112c1353899df26c7cdc9198c7df8 293 Gene3D G3DSA:3.20.20.30 1 293 9.1E-56 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_01125 9c8112c1353899df26c7cdc9198c7df8 293 SUPERFAMILY SSF51679 20 292 8.51E-51 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_01125 9c8112c1353899df26c7cdc9198c7df8 293 Pfam PF00296 Luciferase-like monooxygenase 21 219 9.3E-45 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RAM_47800 1bda52e71c3db6305a490d30bf1e6626 174 Pfam PF02575 YbaB/EbfC DNA-binding family 15 88 9.6E-7 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family RAM_40455 6b84cf037a2730c109dff4e0958f2a3e 246 PIRSF PIRSF015736 8 245 1.2E-56 T 13-10-2018 IPR026286 Maleate isomerase/Arylmalonate decarboxylase RAM_40455 6b84cf037a2730c109dff4e0958f2a3e 246 Gene3D G3DSA:3.40.50.12500 14 246 7.7E-60 T 13-10-2018 RAM_05790 ecede5e1a63118ac5ce8b1ec3cfdd9e7 213 Pfam PF13559 Domain of unknown function (DUF4129) 130 200 7.0E-14 T 13-10-2018 IPR025403 Domain of unknown function DUF4129 RAM_07275 dd8e2ce6a291ccbd558eaf3e83de8c94 160 SUPERFAMILY SSF51679 22 146 8.24E-5 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RAM_01850 0a1433ba2bb940b35385085759398bb4 148 SUPERFAMILY SSF140990 16 147 2.22E-7 T 13-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 RAM_32350 6b9fa89cdde825ea9aeb6e8a45f7a518 404 Pfam PF06224 Winged helix DNA-binding domain 37 381 1.1E-70 T 13-10-2018 IPR009351 Protein of unknown function DUF1006 RAM_14745 eb5a14c39ff13f29912bf74fc0731ecc 363 Pfam PF06224 Winged helix DNA-binding domain 32 349 2.2E-66 T 13-10-2018 IPR009351 Protein of unknown function DUF1006 RAM_16585 57e90a137d3a72cec545ec1996faee55 214 SUPERFAMILY SSF56634 20 90 4.97E-6 T 13-10-2018 IPR020835 Catalase superfamily GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RAM_11305 2616875e8af685efea7ab98ad9aa8b91 198 Pfam PF10821 Protein of unknown function (DUF2567) 57 194 1.6E-9 T 13-10-2018 IPR021213 Protein of unknown function DUF2567 RAM_35290 7598b1ba0e21ed4bee71892d03ae0505 127 Gene3D G3DSA:3.30.70.1060 1 118 2.0E-35 T 13-10-2018 RAM_35290 7598b1ba0e21ed4bee71892d03ae0505 127 SUPERFAMILY SSF54909 2 117 5.63E-29 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RAM_35290 7598b1ba0e21ed4bee71892d03ae0505 127 Pfam PF03795 YCII-related domain 2 116 3.7E-14 T 13-10-2018 IPR005545 YCII-related RAM_15055 55cd3430ef6e36ea6dc4069ad1a494e4 194 SUPERFAMILY SSF57884 168 191 5.89E-5 T 13-10-2018 IPR035451 Ada-like domain superfamily RAM_01045 755ea2b817f18fec81f961ddfcb4c2eb 446 SUPERFAMILY SSF53187 26 359 2.07E-49 T 13-10-2018 RAM_01045 755ea2b817f18fec81f961ddfcb4c2eb 446 Pfam PF04389 Peptidase family M28 113 321 6.4E-29 T 13-10-2018 IPR007484 Peptidase M28 RAM_01045 755ea2b817f18fec81f961ddfcb4c2eb 446 Gene3D G3DSA:3.40.630.10 24 363 7.7E-61 T 13-10-2018 RAM_33355 3aface2d85d76491eee236bfe2179039 282 Pfam PF12679 ABC-2 family transporter protein 87 281 2.1E-9 T 13-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 RAM_05580 1923a68586a9c9e608881b8942255874 364 Pfam PF10094 Uncharacterized protein conserved in bacteria (DUF2332) 10 361 6.4E-111 T 13-10-2018 IPR011200 Uncharacterised conserved protein UCP012608 RAM_44280 d62b7dd948d3742d69b73b0397b2ca34 186 Pfam PF06386 Gas vesicle synthesis protein GvpL/GvpF 6 123 8.0E-19 T 13-10-2018 IPR009430 Gas vesicle protein GvpL/GvpF GO:0031411|GO:0031412 RAM_08165 66e594fd242ef708b5fd97d7b898f251 215 SUPERFAMILY SSF140453 34 100 8.5E-5 T 13-10-2018 IPR036689 ESAT-6-like superfamily RAM_29415 1ffb09714e1744050959cdc7b1fd0170 134 Pfam PF06210 Protein of unknown function (DUF1003) 39 128 4.4E-14 T 13-10-2018 IPR010406 Protein of unknown function DUF1003 RAM_30080 40baf6b1742acab08fcbffb9eafe858e 191 Gene3D G3DSA:3.30.1360.200 78 191 7.2E-20 T 13-10-2018 RAM_26080 e85989182edff1111bd1c948b34272e0 96 Gene3D G3DSA:3.30.1390.10 60 96 2.3E-6 T 13-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like RAM_30135 5c2bbffc32b22c0568cc250147c3db60 66 Pfam PF11272 Protein of unknown function (DUF3072) 10 64 1.4E-32 T 13-10-2018 IPR021425 Protein of unknown function DUF3072 RAM_16045 91017214a9cdfc7048c0341558151575 1251 Gene3D G3DSA:3.40.366.20 254 395 3.5E-5 T 13-10-2018 RAM_16045 91017214a9cdfc7048c0341558151575 1251 SUPERFAMILY SSF52151 33 368 1.54E-20 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RAM_16045 91017214a9cdfc7048c0341558151575 1251 Gene3D G3DSA:3.40.366.10 30 210 5.4E-15 T 13-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 RAM_21280 221cdbc3227de2bf395c1289a9149c82 199 Pfam PF09860 Uncharacterized protein conserved in bacteria (DUF2087) 123 191 3.9E-25 T 13-10-2018 IPR018656 Domain of unknown function DUF2087 RAM_07075 78641a879510821daebabbfa76634f74 192 Pfam PF13302 Acetyltransferase (GNAT) domain 26 124 1.6E-12 T 13-10-2018 IPR000182 GNAT domain RAM_07075 78641a879510821daebabbfa76634f74 192 SUPERFAMILY SSF55729 4 148 7.03E-20 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RAM_07075 78641a879510821daebabbfa76634f74 192 Gene3D G3DSA:3.40.630.30 1 164 1.1E-22 T 13-10-2018 RAM_26285 a16297e35fffad9ba9dd2fca05bf96f2 102 Pfam PF14216 Domain of unknown function (DUF4326) 16 96 6.8E-21 T 13-10-2018 IPR025475 Protein of unknown function DUF4326) RAM_15380 77da5c77a5c07b42f475188003e509dc 130 Pfam PF17032 zinc-ribbon family 19 77 1.9E-7 T 13-10-2018 IPR031493 Zinc-ribbon 15 RAM_33500 f45d6b5cb33cb06081a57ca74605fa56 247 Pfam PF13490 Putative zinc-finger 5 39 6.8E-10 T 13-10-2018 IPR027383 Putative zinc-finger RAM_31985 edc29ba13f6028027a9c529ab7aac443 464 SUPERFAMILY SSF56059 139 320 8.39E-15 T 13-10-2018 RAM_39840 00636e29fc6a4c33deb40141080574d8 181 Gene3D G3DSA:3.90.79.10 2 180 6.3E-42 T 13-10-2018 RAM_39840 00636e29fc6a4c33deb40141080574d8 181 Pfam PF00293 NUDIX domain 42 155 1.4E-9 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RAM_39840 00636e29fc6a4c33deb40141080574d8 181 SUPERFAMILY SSF55811 4 174 6.23E-35 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RAM_46900 e06f0579d143aa305471db050f9b3c7b 131 Pfam PF10861 Protein of Unknown function (DUF2784) 4 110 1.2E-28 T 13-10-2018 IPR021218 Protein of unknown function DUF2784 RAM_45380 b26214c88d14620b8c8a36aac8a58b21 272 SUPERFAMILY SSF55811 24 230 2.75E-17 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RAM_45380 b26214c88d14620b8c8a36aac8a58b21 272 Gene3D G3DSA:3.90.79.10 26 257 6.1E-67 T 13-10-2018 RAM_10825 83a66386bf10f3c5a027d1f5c8e35716 258 Pfam PF14428 SCP1.201-like deaminase 138 250 1.1E-27 T 13-10-2018 IPR032724 Deaminase, SCP1.201-like RAM_31730 10324f0047713359827d5924ac05d59d 232 Pfam PF14011 EspG family 13 219 2.4E-29 T 13-10-2018 IPR025734 EspG family RAM_01240 aaef01dae443aaac117c430c635d8f40 308 Pfam PF04228 Putative neutral zinc metallopeptidase 11 302 3.0E-76 T 13-10-2018 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative RAM_05540 f3de34d6d5fc059f383119f3f92d9966 277 Pfam PF02517 CAAX protease self-immunity 107 195 3.2E-12 T 13-10-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 RAM_35090 5074543ce5b9335b7afa92e6008ba05e 492 Gene3D G3DSA:1.20.1740.10 11 470 5.2E-43 T 13-10-2018 RAM_35090 5074543ce5b9335b7afa92e6008ba05e 492 Pfam PF13520 Amino acid permease 34 445 8.0E-35 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RAM_35090 5074543ce5b9335b7afa92e6008ba05e 492 PIRSF PIRSF006060 1 483 5.1E-62 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RAM_38365 582372d1002b515ad0be9cbf7363df58 258 Pfam PF03707 Bacterial signalling protein N terminal repeat 56 115 2.7E-16 T 13-10-2018 IPR005330 MHYT domain RAM_38365 582372d1002b515ad0be9cbf7363df58 258 Pfam PF03707 Bacterial signalling protein N terminal repeat 121 179 4.7E-18 T 13-10-2018 IPR005330 MHYT domain RAM_38365 582372d1002b515ad0be9cbf7363df58 258 Pfam PF03707 Bacterial signalling protein N terminal repeat 183 230 4.5E-7 T 13-10-2018 IPR005330 MHYT domain RAM_01435 beb799a5c193994150552b8a2bbaabc1 247 Pfam PF06725 3D domain 191 244 3.4E-6 T 13-10-2018 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 RAM_13630 74a981bdd7ac3e7708037d1b6b0cd5fc 432 Pfam PF00150 Cellulase (glycosyl hydrolase family 5) 57 198 4.2E-7 T 13-10-2018 IPR001547 Glycoside hydrolase, family 5 GO:0004553|GO:0005975 RAM_13630 74a981bdd7ac3e7708037d1b6b0cd5fc 432 SUPERFAMILY SSF51445 45 368 2.41E-35 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_13630 74a981bdd7ac3e7708037d1b6b0cd5fc 432 Gene3D G3DSA:3.20.20.80 34 339 1.6E-30 T 13-10-2018 RAM_02715 9cfc3434672b8038841db0263a5a777f 99 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 1 99 20.337 T 13-10-2018 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 RAM_02715 9cfc3434672b8038841db0263a5a777f 99 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 6 93 3.3E-23 T 13-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like RAM_18445 2d87f08a60c543102903a1541fa81536 275 SUPERFAMILY SSF53901 34 157 3.4E-7 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_18445 2d87f08a60c543102903a1541fa81536 275 Gene3D G3DSA:3.40.47.10 39 166 1.4E-5 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RAM_12900 50f278e97f6a7c45a1961f1ddf72a47c 205 Pfam PF01794 Ferric reductase like transmembrane component 49 152 1.2E-7 T 13-10-2018 IPR013130 Ferric reductase transmembrane component-like domain RAM_14105 9d7cc5e360a38b19dc1870b6d8a9ae53 147 Pfam PF10756 Bacterial PH domain 71 138 4.7E-21 T 13-10-2018 IPR019692 Protein of unknown function DUF2581 RAM_24955 16a1d4b2db845504b00ea560c146cb78 278 Pfam PF12294 Protein of unknown function (DUF3626) 158 264 1.6E-23 T 13-10-2018 IPR022074 Protein of unknown function DUF3626 RAM_24955 16a1d4b2db845504b00ea560c146cb78 278 Pfam PF12294 Protein of unknown function (DUF3626) 31 151 2.1E-36 T 13-10-2018 IPR022074 Protein of unknown function DUF3626 RAM_10645 57b1e292566814480c8cfdd25b142cb6 179 Pfam PF11774 Lsr2 2 71 4.0E-14 T 13-10-2018 IPR024412 Lsr2 RAM_10645 57b1e292566814480c8cfdd25b142cb6 179 Gene3D G3DSA:3.30.60.230 1 54 3.0E-18 T 13-10-2018 RAM_10645 57b1e292566814480c8cfdd25b142cb6 179 ProDom PD026347 LSR2-LIKE LSR2 ANTIGEN IMMUNE PRECURSOR RESPONSE SIGNAL PLASMID LYSYL GP61 1 54 5.0E-10 T 13-10-2018 IPR024412 Lsr2 RAM_33540 c992f6e304662630dc49d937655f445e 443 Pfam PF03929 PepSY-associated TM region 30 377 2.6E-60 T 13-10-2018 IPR005625 PepSY-associated TM protein RAM_13775 a3aa325ec2ed67a234f80a3acde1e368 125 SUPERFAMILY SSF54593 8 121 5.64E-16 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_13775 a3aa325ec2ed67a234f80a3acde1e368 125 Gene3D G3DSA:3.10.180.10 2 124 1.7E-23 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RAM_39085 a3a43cf4f7c8801d73c3a0386d7a25fb 397 Pfam PF13556 PucR C-terminal helix-turn-helix domain 336 394 4.7E-14 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain RAM_39085 a3a43cf4f7c8801d73c3a0386d7a25fb 397 Gene3D G3DSA:1.10.10.2840 269 396 3.4E-13 T 13-10-2018 RAM_43835 46c2b63f6ca10a78a6c8b7eb0acd1a25 227 SUPERFAMILY SSF48452 2 184 4.17E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_42475 6078c479a24b99e25a82d44fe7fe7388 265 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 8 182 2.0E-26 T 13-10-2018 IPR013830 SGNH hydrolase-type esterase domain RAM_42475 6078c479a24b99e25a82d44fe7fe7388 265 Gene3D G3DSA:3.40.50.1110 4 192 4.9E-29 T 13-10-2018 IPR036514 SGNH hydrolase superfamily RAM_42475 6078c479a24b99e25a82d44fe7fe7388 265 SUPERFAMILY SSF52266 4 191 7.33E-32 T 13-10-2018 RAM_05980 46c1fb3b8d705bc69479ac0e56a6e749 135 Gene3D G3DSA:1.10.10.1320 4 60 4.2E-8 T 13-10-2018 RAM_33060 3a7046cefe6d2dbf995b1cefb93e9002 705 Pfam PF01757 Acyltransferase family 24 331 7.9E-26 T 13-10-2018 IPR002656 Acyltransferase 3 GO:0016747 RAM_05795 828b5a17d64b207601f323aa021ef678 379 Pfam PF14258 Domain of unknown function (DUF4350) 51 112 5.1E-10 T 13-10-2018 IPR025646 Domain of unknown function DUF4350 RAM_05355 74e803f89c52cbeb40681a059f2e765d 328 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 1 315 1.6E-57 T 13-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 RAM_30870 fe1524029931db4f61577a50dbf1c545 143 Pfam PF03995 Peptidase inhibitor family I36 32 117 9.2E-16 T 13-10-2018 RAM_13495 c2aad91d6fe27af1088620251272d58a 338 Gene3D G3DSA:3.90.920.30 24 301 9.9E-81 T 13-10-2018 RAM_37760 ced187e6f79a863cede222cbc987bed2 1084 Gene3D G3DSA:1.20.120.20 370 517 8.6E-6 T 13-10-2018 RAM_31295 aae4c1d0492fffae1ee7c5d93f8191ae 49 SUPERFAMILY SSF56784 24 47 5.36E-5 T 13-10-2018 IPR036412 HAD-like superfamily RAM_05615 030c43430c3947c5d9181e66bacb8f2a 290 Pfam PF12705 PD-(D/E)XK nuclease superfamily 23 272 2.5E-32 T 13-10-2018 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type RAM_26785 2fdf1ee231891d552937f420ad02db5c 87 Pfam PF11239 Protein of unknown function (DUF3040) 1 79 3.0E-16 T 13-10-2018 IPR021401 Protein of unknown function DUF3040 RAM_13200 11aaa731a829c7c3181b44a78b8cae56 459 Gene3D G3DSA:3.90.1200.10 209 454 1.7E-90 T 13-10-2018 RAM_13200 11aaa731a829c7c3181b44a78b8cae56 459 SUPERFAMILY SSF56112 133 426 3.06E-19 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RAM_13200 11aaa731a829c7c3181b44a78b8cae56 459 Pfam PF01636 Phosphotransferase enzyme family 215 368 8.0E-9 T 13-10-2018 IPR002575 Aminoglycoside phosphotransferase RAM_40155 edb046c2b9afd08337d9c2f1d5647f7c 539 Pfam PF05787 Bacterial protein of unknown function (DUF839) 249 433 4.8E-5 T 13-10-2018 IPR008557 Protein of unknown function DUF839 RAM_20680 c567597e017ad66d5892697ae0a607a3 448 SUPERFAMILY SSF53474 54 403 3.87E-14 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_11225 b8797273c3b632163226ca1efda0db4d 60 Pfam PF13376 Bacteriocin-protection, YdeI or OmpD-Associated 3 60 5.0E-23 T 13-10-2018 RAM_41140 4fcc00796e0682eaa425e10bf47b47cd 756 SUPERFAMILY SSF53474 548 625 3.0E-6 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_31205 39fafede1c6e6cb7bcb18ab9fa8b9d25 260 Pfam PF07920 Protein of unknown function (DUF1684) 117 254 5.1E-42 T 13-10-2018 IPR012467 Protein of unknown function DUF1684 RAM_42325 df784627205d15e4bbde55d908e53a5e 106 TIGRFAM TIGR03544 DivI1A_domain: DivIVA domain 1 37 2.1E-13 T 13-10-2018 IPR019933 DivIVA domain RAM_42325 df784627205d15e4bbde55d908e53a5e 106 TIGRFAM TIGR03544 DivI1A_domain: DivIVA domain 43 79 7.1E-9 T 13-10-2018 IPR019933 DivIVA domain RAM_42005 3989978a00cba0da24a4dfa32d2eff1a 153 Pfam PF03995 Peptidase inhibitor family I36 40 112 2.7E-12 T 13-10-2018 RAM_08930 fb942b4faa2276bde1eafd41ec424382 298 Pfam PF01609 Transposase DDE domain 35 264 1.0E-18 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 RAM_39825 d0e77d6f32ce353cef418cb31f23feed 258 Gene3D G3DSA:3.90.70.10 92 215 2.2E-7 T 13-10-2018 RAM_40535 181ae42e5de61a6584dffd8f8416a521 156 Pfam PF12587 Protein of unknown function (DUF3761) 86 156 7.5E-23 T 13-10-2018 IPR022236 Protein of unknown function DUF3761 RAM_15720 546603ebd7e00a73c84e2b52215f4665 341 Pfam PF02653 Branched-chain amino acid transport system / permease component 59 329 1.3E-39 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 RAM_32825 83a1e9f412b068c2048f0142967a095c 123 Pfam PF05331 Protein of unknown function (DUF742) 12 120 6.7E-34 T 13-10-2018 IPR007995 Protein of unknown function DUF742 RAM_17290 406df0e26dfebfdae10fd0782efd73af 300 SUPERFAMILY SSF47240 94 218 5.14E-7 T 13-10-2018 IPR009078 Ferritin-like superfamily RAM_17290 406df0e26dfebfdae10fd0782efd73af 300 Pfam PF11583 P-aminobenzoate N-oxygenase AurF 10 284 9.0E-100 T 13-10-2018 IPR025859 P-aminobenzoate N-oxygenase AurF RAM_05025 cb85d46c2af236f0cfcaa717a656cfcc 169 Pfam PF04138 GtrA-like protein 13 143 1.4E-17 T 13-10-2018 IPR007267 GtrA-like protein GO:0000271|GO:0016021 RAM_43540 bc80d0dc7059709dada09e462a0fb8c8 489 Pfam PF00860 Permease family 32 443 2.4E-28 T 13-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 RAM_45400 9478880280ddf2f8fda0b1a999dbb317 53 Pfam PF13783 Domain of unknown function (DUF4177) 6 42 3.3E-6 T 13-10-2018 IPR025234 Protein of unknown function DUF4177 RAM_02060 d69dd9df6beae544d1763e08d2d5f1fc 84 Pfam PF04149 Domain of unknown function (DUF397) 22 76 1.1E-15 T 13-10-2018 IPR007278 Domain of unknown function DUF397 RAM_42535 acc071dba7506ffe04e61ff7fb76df47 450 SUPERFAMILY SSF54631 224 334 2.78E-14 T 13-10-2018 RAM_42535 acc071dba7506ffe04e61ff7fb76df47 450 Gene3D G3DSA:3.10.580.10 214 338 8.9E-11 T 13-10-2018 RAM_01220 b7cc0bba2be67e6dad2bca32bdca1d01 190 Pfam PF10759 Protein of unknown function (DUF2587) 38 190 4.9E-77 T 13-10-2018 IPR019695 Bacterial proteasome activator GO:0061136 RAM_35640 af615fea7f23b21ca62c2c9c1ae0bc27 174 Gene3D G3DSA:1.10.357.10 1 165 1.6E-25 T 13-10-2018 RAM_43190 71ece5cf6232327a0b58e0efee82b184 409 Pfam PF13529 Peptidase_C39 like family 212 363 4.0E-32 T 13-10-2018 IPR039564 Peptidase C39-like RAM_43190 71ece5cf6232327a0b58e0efee82b184 409 Gene3D G3DSA:3.90.70.10 233 408 3.4E-11 T 13-10-2018 RAM_00690 e5bdce8a1e4f9745c59db699549973e9 596 Gene3D G3DSA:1.20.1730.10 24 238 4.6E-27 T 13-10-2018 IPR038377 Sodium/glucose symporter superfamily RAM_00690 e5bdce8a1e4f9745c59db699549973e9 596 Gene3D G3DSA:1.20.1730.10 274 561 2.0E-17 T 13-10-2018 IPR038377 Sodium/glucose symporter superfamily RAM_00690 e5bdce8a1e4f9745c59db699549973e9 596 Pfam PF00474 Sodium:solute symporter family 35 196 8.4E-24 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 RAM_00690 e5bdce8a1e4f9745c59db699549973e9 596 Pfam PF00474 Sodium:solute symporter family 297 500 1.7E-16 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 RAM_27440 64176d9b88e2353ba54ec41ca3194429 450 Pfam PF07287 Acyclic terpene utilisation family protein AtuA 50 334 1.9E-23 T 13-10-2018 IPR010839 Acyclic terpene utilisation RAM_06525 c1cf15c2fa1fab79f235e00c223e61b3 168 Pfam PF07291 Methylamine utilisation protein MauE 5 106 3.4E-13 T 13-10-2018 IPR009908 Methylamine utilisation protein, MauE GO:0016021|GO:0030416 RAM_12735 c15af9cbb3463aa2f6ab1bada1cfd541 411 SUPERFAMILY SSF53474 127 400 4.65E-49 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_12735 c15af9cbb3463aa2f6ab1bada1cfd541 411 Gene3D G3DSA:3.40.50.1820 129 407 6.5E-58 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_12735 c15af9cbb3463aa2f6ab1bada1cfd541 411 Pfam PF07859 alpha/beta hydrolase fold 167 380 2.4E-27 T 13-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 RAM_32725 8f61c13b51452942ae986428f6d16bd7 206 Pfam PF13358 DDE superfamily endonuclease 18 168 2.1E-26 T 13-10-2018 IPR038717 Tc1-like transposase, DDE domain RAM_22265 1e2e102740ab6b9055e4ab6c30080ff2 50 SUPERFAMILY SSF51161 11 45 1.94E-5 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily RAM_24440 2b33f8378f87139b7c90eeb0a193fd14 743 Pfam PF04738 Lantibiotic dehydratase, C terminus 57 697 2.5E-41 T 13-10-2018 IPR006827 Lantibiotic dehydratase, N-terminal RAM_22940 71c2ea427660f1b4ff672ae39c04757f 278 Pfam PF03780 Asp23 family, cell envelope-related function 213 273 7.8E-9 T 13-10-2018 IPR005531 Alkaline shock protein Asp23 RAM_11140 a6930e65f4cc8fcf8f5f2814381852d4 215 Pfam PF11241 Protein of unknown function (DUF3043) 32 211 1.3E-61 T 13-10-2018 IPR021403 Protein of unknown function DUF3043 RAM_36975 4330e46bbc082851ff15abe419062abc 165 Pfam PF07681 DoxX 9 88 1.4E-14 T 13-10-2018 IPR032808 DoxX family RAM_25500 b55bda64b530e66886ff41e14e7bb393 556 Gene3D G3DSA:1.20.1250.20 7 205 8.2E-28 T 13-10-2018 RAM_25500 b55bda64b530e66886ff41e14e7bb393 556 Gene3D G3DSA:1.20.1250.20 291 540 2.9E-15 T 13-10-2018 RAM_25500 b55bda64b530e66886ff41e14e7bb393 556 Pfam PF07690 Major Facilitator Superfamily 12 426 2.9E-39 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAM_25500 b55bda64b530e66886ff41e14e7bb393 556 SUPERFAMILY SSF103473 5 539 1.96E-48 T 13-10-2018 IPR036259 MFS transporter superfamily RAM_16510 9dc0f52aeb3a8b77c6ddb2457f80353a 335 Pfam PF01522 Polysaccharide deacetylase 113 250 5.6E-12 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 RAM_16510 9dc0f52aeb3a8b77c6ddb2457f80353a 335 Gene3D G3DSA:3.20.20.370 58 289 1.2E-30 T 13-10-2018 RAM_16510 9dc0f52aeb3a8b77c6ddb2457f80353a 335 SUPERFAMILY SSF88713 76 252 5.99E-17 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RAM_24825 5101d2e7b4a6b6a68b7e56034dd445eb 255 Pfam PF14230 Domain of unknown function (DUF4333) 169 244 3.6E-24 T 13-10-2018 IPR025637 Domain of unknown function DUF4333 RAM_02550 0e03bff9cab4859cf5346e3efdca0167 257 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 20 235 2.4E-40 T 13-10-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 RAM_22585 60bed975bd849e03031682ab05137882 313 Pfam PF14100 Methane oxygenase PmoA 21 303 9.6E-78 T 13-10-2018 IPR029475 Methane oxygenase PmoA RAM_03740 6a1717c673ecbc86aca6b03e2d9459b6 838 Gene3D G3DSA:1.10.287.1060 157 248 5.6E-5 T 13-10-2018 RAM_10400 b9c7acf15d915394fbe3141511e4ff08 280 Pfam PF13349 Putative adhesin 14 216 2.4E-10 T 13-10-2018 IPR025164 Putative adhesin RAM_30270 e700a30d01af648a527f315978987232 123 Pfam PF05331 Protein of unknown function (DUF742) 13 123 1.6E-32 T 13-10-2018 IPR007995 Protein of unknown function DUF742 RAM_13740 add797034d0f13a4b8c39bbb3183c5d6 315 Pfam PF04087 Domain of unknown function (DUF389) 145 289 2.7E-26 T 13-10-2018 IPR005240 Protein of unknown function DUF389 RAM_35700 d4bd16b20689d8a9348cf59afcbe9316 61 Pfam PF17227 Family of unknown function (DUF5302) 11 61 6.4E-22 T 13-10-2018 IPR035172 Protein of unknown function DUF5302 RAM_45255 6e349c37eca1a9679cebb2dda38aff3f 242 Pfam PF01988 VIT family 27 234 2.7E-56 T 13-10-2018 IPR008217 Ccc1 family RAM_06130 1e1168f005fb4b9c3c8b8e7ee8f0bbf0 282 Pfam PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) 20 246 2.6E-58 T 13-10-2018 IPR019108 Cytochrome c oxidase caa3-type, assembly factor CtaG-related RAM_31490 f3f2a9b0e0c200da953d993af0949e7c 385 Pfam PF02653 Branched-chain amino acid transport system / permease component 67 341 1.0E-54 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 RAM_10610 e1f7112e7268bf8843aba1ee2cad657e 369 Pfam PF00487 Fatty acid desaturase 65 332 7.1E-33 T 13-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 RAM_40965 40b8d9cabe02ca3eaa7b01d9ce7a98fb 84 Hamap MF_01479 Transcriptional regulator WhiB [whiB]. 1 76 18.055 T 13-10-2018 IPR003482 Transcription factor WhiB RAM_40965 40b8d9cabe02ca3eaa7b01d9ce7a98fb 84 Pfam PF02467 Transcription factor WhiB 3 71 6.0E-26 T 13-10-2018 IPR034768 WhiB-like iron-sulfur binding domain RAM_05595 2a5e7c6d78e473b4dc585d426eb7aee8 186 Pfam PF03703 Bacterial PH domain 81 155 5.9E-13 T 13-10-2018 IPR005182 Domain of unknown function DUF304 RAM_06325 b7faad2e47659a68a850b7fab1221cc5 999 Pfam PF03699 Uncharacterised protein family (UPF0182) 20 832 1.2E-272 T 13-10-2018 IPR005372 Uncharacterised protein family UPF0182 GO:0016021 RAM_06325 b7faad2e47659a68a850b7fab1221cc5 999 Hamap MF_01600 UPF0182 protein . 11 908 17.879 T 13-10-2018 IPR005372 Uncharacterised protein family UPF0182 GO:0016021 RAM_39645 96c9abe6b5264c60772f9efb30949ef6 185 Pfam PF09438 Domain of unknown function (DUF2017) 6 183 2.1E-63 T 13-10-2018 IPR018561 Domain of unknown function DUF2017 RAM_19915 15d712adf0edcd6db20dd877ae19456a 405 Pfam PF01594 AI-2E family transporter 73 383 2.6E-43 T 13-10-2018 IPR002549 Transmembrane protein TqsA-like RAM_12530 84691ab50594086c1310ce6b5c855ac9 160 Gene3D G3DSA:1.10.490.10 8 130 1.6E-28 T 13-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 RAM_12530 84691ab50594086c1310ce6b5c855ac9 160 SUPERFAMILY SSF46458 7 122 2.44E-24 T 13-10-2018 IPR009050 Globin-like superfamily RAM_12530 84691ab50594086c1310ce6b5c855ac9 160 Pfam PF01152 Bacterial-like globin 11 108 1.2E-15 T 13-10-2018 IPR001486 Truncated hemoglobin GO:0019825 RAM_16390 69d77fec0f22a6776a4a866bc1e3e5b4 105 TIGRFAM TIGR03462 CarR_dom_SF: lycopene cyclase domain 5 95 1.3E-18 T 13-10-2018 IPR017825 Lycopene cyclase domain GO:0016872 KEGG: 00906+2.5.1.32+5.5.1.19|MetaCyc: PWY-5943|MetaCyc: PWY-5947|MetaCyc: PWY-6279|MetaCyc: PWY-7591|MetaCyc: PWY-7938|MetaCyc: PWY-7939|MetaCyc: PWY-7947 RAM_00760 f3d6bcdb01398a6f8fc8b0b981174e3c 270 Pfam PF02517 CAAX protease self-immunity 166 254 8.0E-14 T 13-10-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 RAM_01620 3ee0c949e40370ca25b959f48d4ed692 332 Pfam PF03640 Secreted repeat of unknown function 198 235 8.8E-14 T 13-10-2018 IPR005297 Lipoprotein repeat RAM_01620 3ee0c949e40370ca25b959f48d4ed692 332 Pfam PF03640 Secreted repeat of unknown function 70 109 1.2E-15 T 13-10-2018 IPR005297 Lipoprotein repeat RAM_01620 3ee0c949e40370ca25b959f48d4ed692 332 Pfam PF03640 Secreted repeat of unknown function 128 168 2.8E-15 T 13-10-2018 IPR005297 Lipoprotein repeat RAM_01620 3ee0c949e40370ca25b959f48d4ed692 332 Pfam PF03640 Secreted repeat of unknown function 253 294 3.0E-14 T 13-10-2018 IPR005297 Lipoprotein repeat RAM_38070 33b3f81e10cbf002b187ca85b040b5a4 313 Pfam PF01186 Lysyl oxidase 212 279 3.9E-11 T 13-10-2018 IPR001695 Lysyl oxidase GO:0005507|GO:0016641|GO:0055114 Reactome: R-HSA-1566948|Reactome: R-HSA-2243919 RAM_38070 33b3f81e10cbf002b187ca85b040b5a4 313 Pfam PF01186 Lysyl oxidase 134 181 2.4E-5 T 13-10-2018 IPR001695 Lysyl oxidase GO:0005507|GO:0016641|GO:0055114 Reactome: R-HSA-1566948|Reactome: R-HSA-2243919 RAM_13855 30708b5d995e0bf9112d3584afab875e 410 Pfam PF02378 Phosphotransferase system, EIIC 24 327 6.1E-69 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 RAM_42935 a4b9c1bad56a0d4987eae103447df223 119 Pfam PF13396 Phospholipase_D-nuclease N-terminal 15 59 7.9E-13 T 13-10-2018 IPR027379 Cardiolipin synthase N-terminal RAM_45060 0ef53a2530d7299bc285f75465c8be64 176 Gene3D G3DSA:1.10.860.10 3 133 8.5E-10 T 13-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal RAM_25355 e3080f35d52d837b23f77f5686b38ab6 165 Pfam PF04138 GtrA-like protein 32 151 5.7E-12 T 13-10-2018 IPR007267 GtrA-like protein GO:0000271|GO:0016021 RAM_08140 f5a9a430481ff123629c923163ec6e93 478 SUPERFAMILY SSF55486 55 208 6.35E-8 T 13-10-2018 RAM_08140 f5a9a430481ff123629c923163ec6e93 478 Pfam PF04228 Putative neutral zinc metallopeptidase 68 267 4.1E-15 T 13-10-2018 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative RAM_05725 ff7195185abc9689ee25dacdef6586f0 220 Pfam PF13349 Putative adhesin 56 218 4.3E-10 T 13-10-2018 IPR025164 Putative adhesin RAM_30120 b99f140ec77981d7aafd890e1d833494 276 SUPERFAMILY SSF47090 58 120 7.85E-7 T 13-10-2018 IPR036365 PGBD-like superfamily RAM_26185 be7e39b1cac496d176ad8e833ea2c6b0 64 Pfam PF14013 MT0933-like antitoxin protein 4 51 1.3E-17 T 13-10-2018 IPR028037 Antitoxin Rv0909/MT0933 RAM_34610 eb62ce9a392d3ab1bd06650fc19529e8 614 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 69 223 4.9E-32 T 13-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like RAM_16650 32e568ea09e7cee82458d8bd35ae4af0 533 SUPERFAMILY SSF50939 72 437 3.73E-21 T 13-10-2018 IPR036278 Sialidase superfamily KEGG: 00511+3.2.1.18|KEGG: 00600+3.2.1.18|Reactome: R-HSA-1660662|Reactome: R-HSA-4085001 RAM_16650 32e568ea09e7cee82458d8bd35ae4af0 533 Gene3D G3DSA:2.120.10.10 143 488 2.7E-16 T 13-10-2018 RAM_41665 3fa6e2589dc1c0ff0801652e67391120 277 Pfam PF12811 Bax inhibitor 1 like 43 276 4.0E-87 T 13-10-2018 IPR010539 Protein of unknown function UCP009160 RAM_41665 3fa6e2589dc1c0ff0801652e67391120 277 PIRSF PIRSF009160 1 277 7.7E-81 T 13-10-2018 IPR010539 Protein of unknown function UCP009160 RAM_21025 1bfdec9e3e82b6e3a02fe2419a2c664e 660 Gene3D G3DSA:1.20.1740.10 57 504 3.5E-7 T 13-10-2018 RAM_00185 f5ff839e9aba42402148c4de5daaa986 123 Pfam PF10756 Bacterial PH domain 48 122 4.3E-9 T 13-10-2018 IPR019692 Protein of unknown function DUF2581 RAM_11750 e48caa7430a5541c3c018136592ad38c 1101 Gene3D G3DSA:1.25.40.10 424 536 1.3E-9 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_11750 e48caa7430a5541c3c018136592ad38c 1101 Gene3D G3DSA:1.25.40.10 726 972 2.8E-17 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_12905 05e9d4304aef0482fad05818512a817c 263 Pfam PF13628 Domain of unknown function (DUF4142) 54 187 1.9E-13 T 13-10-2018 IPR025419 Domain of unknown function DUF4142 RAM_46590 d10473280c6d090db913072f35446d5e 188 Pfam PF12079 Protein of unknown function (DUF3558) 5 182 1.4E-25 T 13-10-2018 IPR024520 Protein of unknown function DUF3558 RAM_08445 52e0bc404de2ae0afc7be3c593d51840 400 Pfam PF02720 Domain of unknown function (DUF222) 26 307 2.0E-13 T 13-10-2018 IPR003870 Domain of unknown function DUF222 RAM_13235 ffc87e1c56b850ff1f683b3f8dfc370e 102 Pfam PF13834 Domain of unknown function (DUF4193) 1 102 4.3E-42 T 13-10-2018 IPR025242 Protein of unknown function DUF4193 RAM_17075 96eb1247159189934852a97a5a4275ee 287 Pfam PF01810 LysE type translocator 18 285 2.3E-25 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RAM_41570 4cf0b7b20add0ab819044f9ae569bd24 151 Pfam PF14155 Domain of unknown function (DUF4307) 30 140 5.4E-31 T 13-10-2018 IPR025443 Protein of unknown function DUF4307 RAM_39235 49a406feb3b47a8761624b499b347cbd 194 SUPERFAMILY SSF51717 28 184 1.24E-11 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RAM_26420 96ceffb8c6e90faa8581687374f91670 331 Pfam PF00248 Aldo/keto reductase family 29 328 1.7E-66 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain RAM_26420 96ceffb8c6e90faa8581687374f91670 331 SUPERFAMILY SSF51430 14 328 4.98E-91 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_26420 96ceffb8c6e90faa8581687374f91670 331 Gene3D G3DSA:3.20.20.100 16 331 1.6E-116 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RAM_02200 b3c996a041c64dee45c2f76f50880a80 97 Pfam PF10724 Protein of unknown function (DUF2516) 3 94 4.4E-28 T 13-10-2018 IPR019662 Protein of unknown function DUF2516 RAM_02425 2ab3ad5d148a2d3aa0d7c8a531b2b256 300 Pfam PF02517 CAAX protease self-immunity 150 249 1.3E-12 T 13-10-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 RAM_05730 10ce40926e21b1570b35eef719f82914 367 Pfam PF06224 Winged helix DNA-binding domain 38 354 5.6E-33 T 13-10-2018 IPR009351 Protein of unknown function DUF1006 RAM_38025 058d861234a2cf4adb6612c98a65a44d 370 Pfam PF09594 Glycosyltransferase family 87 45 313 2.2E-10 T 13-10-2018 IPR018584 Glycosyltransferase family 87 GO:0016758 RAM_47815 2c565c8cbea4f460c1b3f74fb95f888d 247 Pfam PF14011 EspG family 7 235 4.0E-35 T 13-10-2018 IPR025734 EspG family RAM_40055 5a14cd8abb1714c4b6818ca9f92754e2 272 Pfam PF11303 Protein of unknown function (DUF3105) 82 209 3.1E-41 T 13-10-2018 IPR021454 Protein of unknown function DUF3105 RAM_12570 3efb9cdba35c07fd4e6c526512c75435 67 Pfam PF04149 Domain of unknown function (DUF397) 8 60 1.2E-21 T 13-10-2018 IPR007278 Domain of unknown function DUF397 RAM_38295 4121033fae476fe9b3f66bcc15961e37 458 SUPERFAMILY SSF56672 2 162 1.78E-16 T 13-10-2018 RAM_44160 8aa20a324ad6a3318864c56a62d7ec1c 145 Pfam PF06305 Lipopolysaccharide assembly protein A domain 94 144 2.0E-10 T 13-10-2018 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 RAM_08225 41b3b0529aca08b098800dfd434fcdac 231 Pfam PF10067 Predicted membrane protein (DUF2306) 57 215 3.3E-34 T 13-10-2018 IPR018750 Protein of unknown function DUF2306, membrane RAM_27150 5e2f654dc880ed062ddeb124d088f205 141 Pfam PF04686 Streptomyces sporulation and cell division protein, SsgA 26 122 2.1E-33 T 13-10-2018 IPR006776 Sporulation-specific cell division protein SsgB GO:0051301 RAM_27150 5e2f654dc880ed062ddeb124d088f205 141 Gene3D G3DSA:2.30.31.20 2 136 1.1E-44 T 13-10-2018 IPR038658 Sporulation-specific cell division protein SsgB superfamily RAM_43755 b7b2a9dfd8a517a93986d9cee0844685 745 Pfam PF13625 Helicase conserved C-terminal domain 462 584 1.1E-41 T 13-10-2018 IPR032830 Helicase XPB/Ssl2, N-terminal domain Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167246|Reactome: R-HSA-427413|Reactome: R-HSA-5696395|Reactome: R-HSA-5696400|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-72086|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73863|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-77075 RAM_17740 8e8fbe048df9bef1da391e6673ad451d 229 TIGRFAM TIGR03943 TIGR03943: TIGR03943 family protein 22 225 2.3E-45 T 13-10-2018 IPR015402 Protein of unknown function DUF1980 RAM_26410 40968da744b08b232d5e82dd35881767 447 SUPERFAMILY SSF48452 328 439 1.37E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RAM_29225 e84e9f694b6665e32eafee67a3185c3a 240 Pfam PF14342 Domain of unknown function (DUF4396) 95 237 4.9E-44 T 13-10-2018 IPR025509 Domain of unknown function DUF4396 RAM_39450 9c1a135975ba0ff829abbd5fa20dd062 123 Pfam PF05331 Protein of unknown function (DUF742) 12 123 1.5E-32 T 13-10-2018 IPR007995 Protein of unknown function DUF742 RAM_13430 117994f3f43def54213be398265d360a 181 Pfam PF11452 Protein of unknown function (DUF3000) 2 173 1.2E-69 T 13-10-2018 IPR021555 Protein of unknown function DUF3000 RAM_22355 5de8d582d6adb0adbdebc201eaa57c88 205 Pfam PF01810 LysE type translocator 16 204 3.6E-15 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RAM_25120 6fad9e60aad3b62aeda1635e3a4a6561 262 ProDom PD040491 SCO1799 RV1486C/MT1533 MB1522C CGL1536 ML1804 MAV321 92 247 6.0E-10 T 13-10-2018 RAM_38045 4df2bc90f134f9bd650fddc58dc42047 468 Pfam PF14885 Hypothetical glycosyl hydrolase family 15 87 370 1.8E-75 T 13-10-2018 IPR029455 Hypothetical glycosyl hydrolase family 15 RAM_05810 953919cda1036424a02209d56e9b531a 338 Pfam PF01944 Stage II sporulation protein M 113 286 1.8E-33 T 13-10-2018 IPR002798 Stage II sporulation protein M-like RAM_35365 a17b925b65c0e5f13e3a0ce2ee393121 224 SUPERFAMILY SSF109854 7 123 3.97E-9 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RAM_35365 a17b925b65c0e5f13e3a0ce2ee393121 224 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 20 189 2.4E-16 T 13-10-2018 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type RAM_25455 a1a2eecd22fc94b0198db0e5e4931eb6 630 Pfam PF13203 Putative metallopeptidase domain 259 483 4.8E-26 T 13-10-2018 IPR025154 Putative metallopeptidase domain RAM_36130 4f8bdebe45fbc3ef5a4f881f9689df7b 69 Pfam PF09489 Probable cobalt transporter subunit (CbtB) 21 69 2.6E-13 T 13-10-2018 IPR012667 Cobalt transporter subunit CbtB, putative RAM_06995 db2fa530551bed04fc04879e27c87812 283 Pfam PF02653 Branched-chain amino acid transport system / permease component 10 267 3.4E-25 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 RAM_41010 444f01dbfe9b2efe358d8ac764743a97 249 SUPERFAMILY SSF89392 28 241 2.08E-9 T 13-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX RAM_26875 e4231fcbf9c9e8f1c7deda505e8396cf 126 Pfam PF03779 SPW repeat 74 120 2.4E-9 T 13-10-2018 IPR005530 SPW repeat RAM_26875 e4231fcbf9c9e8f1c7deda505e8396cf 126 Pfam PF03779 SPW repeat 21 66 1.3E-9 T 13-10-2018 IPR005530 SPW repeat RAM_19895 2f848853972d4753b61d5aa5e13e60d0 454 Pfam PF10009 Uncharacterized protein conserved in bacteria (DUF2252) 53 442 2.3E-105 T 13-10-2018 IPR018721 Protein of unknown function DUF2252 RAM_00965 f77de07c51be5d424d28407f9e9c13d5 150 Pfam PF03994 Domain of Unknown Function (DUF350) 95 148 2.6E-11 T 13-10-2018 IPR007140 Protein of unknown function DUF350 RAM_00965 f77de07c51be5d424d28407f9e9c13d5 150 Pfam PF03994 Domain of Unknown Function (DUF350) 25 78 6.6E-13 T 13-10-2018 IPR007140 Protein of unknown function DUF350 RAM_30945 0bea5b9fd605099b4664e288ddeac31f 219 Pfam PF13761 Domain of unknown function (DUF4166) 16 195 2.5E-58 T 13-10-2018 IPR025311 Domain of unknown function DUF4166 RAM_28995 54b3e5aaa89eab2f8384223eab2aba0d 208 Pfam PF13546 DDE superfamily endonuclease 35 166 9.4E-19 T 13-10-2018 IPR038721 Transposase IS701-like, DDE domain RAM_07460 243ac8b5c8832869e04189999c5e88b1 189 Pfam PF03729 Short repeat of unknown function (DUF308) 135 182 5.3E-6 T 13-10-2018 IPR005325 Protein of unknown function DUF308, membrane RAM_07460 243ac8b5c8832869e04189999c5e88b1 189 Pfam PF03729 Short repeat of unknown function (DUF308) 21 80 3.0E-10 T 13-10-2018 IPR005325 Protein of unknown function DUF308, membrane RAM_07460 243ac8b5c8832869e04189999c5e88b1 189 Pfam PF03729 Short repeat of unknown function (DUF308) 77 147 3.1E-12 T 13-10-2018 IPR005325 Protein of unknown function DUF308, membrane RAM_02735 8fd1b334307e96e51f52234254e617be 222 Pfam PF14011 EspG family 8 221 5.7E-35 T 13-10-2018 IPR025734 EspG family RAM_03405 7bc7d7a34e9d2ecf4df55d0bf4a4d16a 422 Pfam PF14362 Domain of unknown function (DUF4407) 20 351 7.6E-84 T 13-10-2018 IPR025519 Protein of unknown function DUF4407 RAM_13375 7a4d89c150e22920e14a8a44b5a6e3d7 209 Pfam PF06197 Protein of unknown function (DUF998) 56 197 2.7E-7 T 13-10-2018 IPR009339 Protein of unknown function DUF998 RAM_28475 b231bf162946e164023f98cb4ff5d312 142 PRINTS PR00075 Fatty acid desaturase family 1 signature 12 33 1.1E-6 T 13-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 RAM_28475 b231bf162946e164023f98cb4ff5d312 142 PRINTS PR00075 Fatty acid desaturase family 1 signature 55 69 1.1E-6 T 13-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 RAM_35295 e2814817c238740cfee79cca28b21939 221 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 29 197 7.7E-18 T 13-10-2018 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type RAM_20000 397026b742a2283b6a17ca2ebe897ee4 716 SUPERFAMILY SSF53474 232 351 4.84E-5 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RAM_04815 a63c1b0b47404e9ac4d590dce1e79fb9 74 Pfam PF13822 Acyl-CoA carboxylase epsilon subunit 8 66 2.9E-22 T 13-10-2018 IPR032716 Acyl-CoA carboxylase epsilon subunit RAM_21705 56e4e40ac8a335f7b5a4a9aeeb216904 62 Pfam PF11387 Protein of unknown function (DUF2795) 13 56 1.4E-17 T 13-10-2018 IPR021527 Protein of unknown function DUF2795 RAM_08050 af8bba6f844fa7c095306b2a9640b618 120 Pfam PF04341 Protein of unknown function, DUF485 23 109 9.6E-37 T 13-10-2018 IPR007436 Protein of unknown function DUF485 RAM_02340 08805680db304615dabc13b641fba41c 278 Pfam PF14257 Domain of unknown function (DUF4349) 8 261 2.8E-64 T 13-10-2018 IPR025645 Domain of unknown function DUF4349 RAM_05325 ef48f14858bddd7331f50d1ae8624ca7 459 Pfam PF01757 Acyltransferase family 64 437 3.1E-22 T 13-10-2018 IPR002656 Acyltransferase 3 GO:0016747 RAM_22310 d03475a30141ebfd305d19db9eabe43d 150 Pfam PF08592 Domain of unknown function (DUF1772) 25 145 3.7E-9 T 13-10-2018 RAM_41615 8771c4e097afbc5e8fe8f3bb65242b4c 277 SUPERFAMILY SSF160424 11 143 1.44E-13 T 13-10-2018 IPR036170 Probable antitoxin YezG superfamily RAM_14210 958f02cbc3ddeebce206adc78be4e828 208 PIRSF PIRSF006324 1 206 5.2E-51 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RAM_14210 958f02cbc3ddeebce206adc78be4e828 208 Pfam PF01810 LysE type translocator 11 203 7.3E-26 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RAM_44400 927de6515916e4ab1ed9bf631266d2eb 203 Pfam PF14016 Protein of unknown function (DUF4232) 64 180 1.4E-15 T 13-10-2018 IPR025326 Protein of unknown function DUF4232 RAM_44395 fe0c35c500214473cc8bb3fae54623bd 441 Pfam PF09852 Predicted membrane protein (DUF2079) 38 425 5.8E-66 T 13-10-2018 IPR018650 Sulfolobus virus STSV1, Orf64 RAM_13130 988347a075d3c2e1d730441e938a6fcc 487 Pfam PF02653 Branched-chain amino acid transport system / permease component 84 471 5.5E-29 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 RAM_31735 6415a0ca396dccae14e2d1a802a6e291 429 SUPERFAMILY SSF140459 73 150 1.49E-5 T 13-10-2018 RAM_19130 6a56c880431ed69291beffbfe7a7f5b7 92 Pfam PF13376 Bacteriocin-protection, YdeI or OmpD-Associated 28 85 1.8E-18 T 13-10-2018 RAM_26490 0f909a1dfe718af7a296f0dd821d87a8 100 Pfam PF11239 Protein of unknown function (DUF3040) 1 79 4.4E-18 T 13-10-2018 IPR021401 Protein of unknown function DUF3040 RAM_21775 4033106d7a3a4fafaa4196a5f767f9d9 285 Pfam PF04230 Polysaccharide pyruvyl transferase 182 222 1.8E-9 T 13-10-2018 IPR007345 Polysaccharide pyruvyl transferase RAM_12125 0502baa5bae5765330e35481376029c0 437 Pfam PF03993 Domain of Unknown Function (DUF349) 279 352 3.4E-20 T 13-10-2018 IPR007139 Protein of unknown function DUF349 RAM_12125 0502baa5bae5765330e35481376029c0 437 Pfam PF03993 Domain of Unknown Function (DUF349) 202 274 2.1E-22 T 13-10-2018 IPR007139 Protein of unknown function DUF349 RAM_12125 0502baa5bae5765330e35481376029c0 437 Pfam PF03993 Domain of Unknown Function (DUF349) 125 198 3.8E-13 T 13-10-2018 IPR007139 Protein of unknown function DUF349 RAM_41995 5cc6786fd8353cb72cb2cb0580043ca3 59 Gene3D G3DSA:3.40.50.720 1 59 5.0E-5 T 13-10-2018 RAM_06630 f667d0303023d178ac858c8b2b7968f2 327 Pfam PF02653 Branched-chain amino acid transport system / permease component 51 315 5.1E-43 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 RAM_32255 95aaaf22e1306c66524aa279d75d3994 168 Pfam PF13707 RloB-like protein 1 166 1.2E-32 T 13-10-2018 IPR025591 RloB-like protein RAM_13470 29a01a7c92d206fa1c864b5d45d1d0dc 304 TIGRFAM TIGR04222 near_uncomplex: TIGR04222 domain 16 219 1.1E-32 T 13-10-2018 IPR026467 Ser/Gly rich, Cys interspersed, C-terminal domain RAM_17025 4edfeda69ffad0d8e6d963bba19a8bac 264 Gene3D G3DSA:2.60.120.200 51 256 2.2E-8 T 13-10-2018 RAM_17980 33fb2af1539445e0254498de2d2f2726 472 SUPERFAMILY SSF50939 55 257 1.03E-16 T 13-10-2018 IPR036278 Sialidase superfamily KEGG: 00511+3.2.1.18|KEGG: 00600+3.2.1.18|Reactome: R-HSA-1660662|Reactome: R-HSA-4085001 RAM_17980 33fb2af1539445e0254498de2d2f2726 472 Gene3D G3DSA:2.120.10.10 30 166 8.8E-6 T 13-10-2018 RAM_17980 33fb2af1539445e0254498de2d2f2726 472 Gene3D G3DSA:2.120.10.10 167 290 7.9E-7 T 13-10-2018 RAM_14410 81fd272e1ec15c9c2c4181c536fd8d9d 239 Pfam PF13803 Domain of unknown function (DUF4184) 2 216 2.8E-37 T 13-10-2018 IPR025238 Protein of unknown function DUF4184 RAM_36555 bd5387d178d2ed2b925dc378daf73f63 43 TIGRFAM TIGR03967 mycofact_MftB: putative mycofactocin binding protein MftB 1 30 2.6E-11 T 13-10-2018 IPR023850 Putative mycofactocin binding protein MftB RAM_28290 ac1c9c651611bfe8955459fc1644273c 447 SUPERFAMILY SSF140459 89 216 8.37E-6 T 13-10-2018 RAM_08000 ed5c3cb6f775432bfb76e121543d5ec8 85 Pfam PF03779 SPW repeat 28 72 3.5E-9 T 13-10-2018 IPR005530 SPW repeat RAM_31320 3e9babd26179a614afac0e218adef79b 413 Pfam PF01548 Transposase 12 167 1.0E-35 T 13-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 RAM_31320 3e9babd26179a614afac0e218adef79b 413 Pfam PF02371 Transposase IS116/IS110/IS902 family 277 360 1.6E-13 T 13-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 RAM_12275 6ba032a4b7a7582878751c169dbec11b 350 Pfam PF13830 Domain of unknown function (DUF4192) 12 321 2.8E-75 T 13-10-2018 IPR025447 Protein of unknown function DUF4192 RAM_08850 d539b358ab104a65f1b1d1c6b02c8bf5 167 Pfam PF12028 Protein of unknown function (DUF3515) 8 163 1.6E-45 T 13-10-2018 IPR021903 Protein of unknown function DUF3515 RAM_23100 83ac8b3649013e23d46d52379dc20361 120 Pfam PF04343 Protein of unknown function, DUF488 9 117 2.0E-24 T 13-10-2018 IPR007438 Protein of unknown function DUF488 RAM_47050 958dcd275055866ce58eab2fce216ddf 143 Pfam PF05331 Protein of unknown function (DUF742) 32 143 1.2E-31 T 13-10-2018 IPR007995 Protein of unknown function DUF742 RAM_05815 907eb6d81e01bad21ea628338b703de4 316 Pfam PF06271 RDD family 19 150 2.9E-17 T 13-10-2018 IPR010432 RDD RAM_06370 fa992f5a07027c317ba1b6bc884b9563 436 Pfam PF01757 Acyltransferase family 8 333 1.5E-14 T 13-10-2018 IPR002656 Acyltransferase 3 GO:0016747 RAM_07245 dceb3758524ec05a6825b13c467f7f63 426 Gene3D G3DSA:1.25.10.10 258 425 6.1E-7 T 13-10-2018 IPR011989 Armadillo-like helical RAM_44625 d2d6d02822db48a5d7bfea36ec4abb53 291 SUPERFAMILY SSF81345 13 266 1.44E-33 T 13-10-2018 IPR037294 ABC transporter, BtuC-like RAM_44625 d2d6d02822db48a5d7bfea36ec4abb53 291 Pfam PF00950 ABC 3 transport family 17 267 6.7E-44 T 13-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 RAM_04750 914afd841a86935d4f52dc73f02b10df 131 Pfam PF08044 Domain of unknown function (DUF1707) 4 56 4.9E-19 T 13-10-2018 IPR012551 Protein of unknown function DUF1707 RAM_14920 b3b9f98c08f8e678b36b64d8677c1ecf 175 Pfam PF07291 Methylamine utilisation protein MauE 11 139 2.1E-6 T 13-10-2018 IPR009908 Methylamine utilisation protein, MauE GO:0016021|GO:0030416 RAM_37445 6bbda8097ccfe2614808072de8f431d7 363 Pfam PF14386 Domain of unknown function (DUF4417) 158 287 5.1E-11 T 13-10-2018 IPR025530 Protein of unknown function DUF4417 RAM_23355 005e7163ae6be728d7f4d77c7f7b76c1 481 Pfam PF00860 Permease family 39 433 1.6E-27 T 13-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 RAM_38745 012349b270c32b6e4b9f0c80d4fa1701 286 SUPERFAMILY SSF51445 72 164 8.63E-7 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RAM_01630 61c1536a181f832c5403fee80d5bf69f 213 Pfam PF06736 Protein of unknown function (DUF1211) 22 110 6.1E-24 T 13-10-2018 IPR010617 Endosomal/lysomomal potassium channel TMEM175 GO:0005267