locus-tag class description AMES_0001 PF00308 Bacterial dnaA protein AMES_0001 PF08299 Bacterial dnaA protein helix-turn-helix AMES_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain AMES_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain AMES_0002 PF02767 DNA polymerase III beta subunit, central domain AMES_0003 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMES_0003 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AMES_0004 PF02463 RecF/RecN/SMC N terminal domain AMES_0005 PF05258 Dna[CI] antecedent, DciA AMES_0006 PF01751 Toprim domain AMES_0006 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_0006 PF00986 DNA gyrase B subunit, carboxyl terminus AMES_0006 PF00204 DNA gyrase B AMES_0007 PF03989 DNA gyrase C-terminal domain, beta-propeller AMES_0007 PF00521 DNA gyrase/topoisomerase IV, subunit A AMES_0008 PF12089 Transmembrane domain of unknown function (DUF3566) AMES_0009 PF00589 Phage integrase family AMES_0022 PF00005 ABC transporter AMES_0022 PF13732 Domain of unknown function (DUF4162) AMES_0023 PF00196 Bacterial regulatory proteins, luxR family AMES_0024 PF01061 ABC-2 type transporter AMES_0025 PF00561 alpha/beta hydrolase fold AMES_0026 PF00067 Cytochrome P450 AMES_0027 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AMES_0027 PF01243 Pyridoxamine 5'-phosphate oxidase AMES_0032 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMES_0034 PF01694 Rhomboid family AMES_0035 PF06781 Cell division protein CrgA AMES_0036 PF04203 Sortase domain AMES_0040 PF00005 ABC transporter AMES_0042 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMES_0043 PF00072 Response regulator receiver domain AMES_0043 PF00196 Bacterial regulatory proteins, luxR family AMES_0044 PF00117 Glutamine amidotransferase class-I AMES_0045 PF00005 ABC transporter AMES_0048 PF00069 Protein kinase domain AMES_0048 PF03793 PASTA domain AMES_0049 PF00069 Protein kinase domain AMES_0050 PF00905 Penicillin binding protein transpeptidase domain AMES_0051 PF01098 Cell cycle protein AMES_0053 PF16697 Inner membrane component of T3SS, cytoplasmic domain AMES_0054 PF12401 Protein of unknown function (DUF2662) AMES_0054 PF00498 FHA domain AMES_0057 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMES_0059 PF01053 Cys/Met metabolism PLP-dependent enzyme AMES_0063 PF00392 Bacterial regulatory proteins, gntR family AMES_0063 PF07729 FCD domain AMES_0064 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMES_0065 PF00528 Binding-protein-dependent transport system inner membrane component AMES_0067 PF00005 ABC transporter AMES_0067 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMES_0068 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMES_0068 PF00005 ABC transporter AMES_0069 PF00171 Aldehyde dehydrogenase family AMES_0071 PF01425 Amidase AMES_0075 PF03328 HpcH/HpaI aldolase/citrate lyase family AMES_0076 PF03328 HpcH/HpaI aldolase/citrate lyase family AMES_0078 PF13460 NAD(P)H-binding AMES_0079 PF04030 D-arabinono-1,4-lactone oxidase AMES_0079 PF01565 FAD binding domain AMES_0080 PF14572 Phosphoribosyl synthetase-associated domain AMES_0080 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AMES_0082 PF00440 Bacterial regulatory proteins, tetR family AMES_0082 PF13977 BetI-type transcriptional repressor, C-terminal AMES_0083 PF00232 Glycosyl hydrolase family 1 AMES_0090 PF04234 CopC domain AMES_0090 PF05425 Copper resistance protein D AMES_0090 PF13115 YtkA-like AMES_0093 PF00528 Binding-protein-dependent transport system inner membrane component AMES_0094 PF00005 ABC transporter AMES_0094 PF00571 CBS domain AMES_0095 PF00528 Binding-protein-dependent transport system inner membrane component AMES_0096 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AMES_0100 PF01209 ubiE/COQ5 methyltransferase family AMES_0101 PF00106 short chain dehydrogenase AMES_0102 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMES_0102 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMES_0102 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMES_0105 PF01609 Transposase DDE domain AMES_0105 PF13808 DDE_Tnp_1-associated AMES_0108 PF07690 Major Facilitator Superfamily AMES_0110 PF07730 Histidine kinase AMES_0111 PF00072 Response regulator receiver domain AMES_0111 PF00196 Bacterial regulatory proteins, luxR family AMES_0112 PF16363 GDP-mannose 4,6 dehydratase AMES_0117 PF00534 Glycosyl transferases group 1 AMES_0127 PF06827 Zinc finger found in FPG and IleRS AMES_0127 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMES_0128 PF07694 5TMR of 5TMR-LYT AMES_0128 PF06580 Histidine kinase AMES_0129 PF06965 Na+/H+ antiporter 1 AMES_0129 PF01343 Peptidase family S49 AMES_0131 PF04397 LytTr DNA-binding domain AMES_0131 PF00072 Response regulator receiver domain AMES_0133 PF00474 Sodium:solute symporter family AMES_0134 PF01206 Sulfurtransferase TusA AMES_0134 PF00581 Rhodanese-like domain AMES_0137 PF07690 Major Facilitator Superfamily AMES_0138 PF02585 GlcNAc-PI de-N-acetylase AMES_0139 PF00067 Cytochrome P450 AMES_0142 PF04545 Sigma-70, region 4 AMES_0142 PF04542 Sigma-70 region 2 AMES_0142 PF04539 Sigma-70 region 3 AMES_0144 PF00210 Ferritin-like domain AMES_0160 PF01654 Cytochrome bd terminal oxidase subunit I AMES_0161 PF02322 Cytochrome bd terminal oxidase subunit II AMES_0162 PF00664 ABC transporter transmembrane region AMES_0162 PF00005 ABC transporter AMES_0163 PF13185 GAF domain AMES_0163 PF07730 Histidine kinase AMES_0163 PF13492 GAF domain AMES_0163 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_0164 PF00196 Bacterial regulatory proteins, luxR family AMES_0164 PF00072 Response regulator receiver domain AMES_0173 PF04434 SWIM zinc finger AMES_0175 PF00485 Phosphoribulokinase / Uridine kinase family AMES_0176 PF01661 Macro domain AMES_0177 PF00800 Prephenate dehydratase AMES_0177 PF01842 ACT domain AMES_0178 PF00300 Histidine phosphatase superfamily (branch 1) AMES_0185 PF03738 Glutathionylspermidine synthase preATP-grasp AMES_0187 PF00561 alpha/beta hydrolase fold AMES_0188 PF00202 Aminotransferase class-III AMES_0189 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMES_0189 PF02403 Seryl-tRNA synthetase N-terminal domain AMES_0190 PF01266 FAD dependent oxidoreductase AMES_0195 PF00196 Bacterial regulatory proteins, luxR family AMES_0196 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMES_0197 PF01370 NAD dependent epimerase/dehydratase family AMES_0199 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AMES_0199 PF00132 Bacterial transferase hexapeptide (six repeats) AMES_0200 PF04542 Sigma-70 region 2 AMES_0200 PF04545 Sigma-70, region 4 AMES_0203 PF04151 Bacterial pre-peptidase C-terminal domain AMES_0203 PF04389 Peptidase family M28 AMES_0204 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMES_0205 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AMES_0205 PF00132 Bacterial transferase hexapeptide (six repeats) AMES_0208 PF13193 AMP-binding enzyme C-terminal domain AMES_0208 PF00501 AMP-binding enzyme AMES_0215 PF01553 Acyltransferase AMES_0217 PF00296 Luciferase-like monooxygenase AMES_0219 PF03275 UDP-galactopyranose mutase AMES_0220 PF01569 PAP2 superfamily AMES_0221 PF01040 UbiA prenyltransferase family AMES_0224 PF00106 short chain dehydrogenase AMES_0225 PF04030 D-arabinono-1,4-lactone oxidase AMES_0225 PF01565 FAD binding domain AMES_0226 PF04138 GtrA-like protein AMES_0227 PF17994 Galactofuranosyltransferase 2 N-terminal AMES_0234 PF00005 ABC transporter AMES_0235 PF01061 ABC-2 type transporter AMES_0236 PF10759 Protein of unknown function (DUF2587) AMES_0237 PF08240 Alcohol dehydrogenase GroES-like domain AMES_0237 PF14765 Polyketide synthase dehydratase AMES_0237 PF00550 Phosphopantetheine attachment site AMES_0237 PF08659 KR domain AMES_0237 PF02801 Beta-ketoacyl synthase, C-terminal domain AMES_0237 PF00698 Acyl transferase domain AMES_0237 PF00109 Beta-ketoacyl synthase, N-terminal domain AMES_0237 PF16197 Ketoacyl-synthetase C-terminal extension AMES_0237 PF00107 Zinc-binding dehydrogenase AMES_0238 PF00266 Aminotransferase class-V AMES_0239 PF02225 PA domain AMES_0239 PF04389 Peptidase family M28 AMES_0240 PF04228 Putative neutral zinc metallopeptidase AMES_0248 PF00106 short chain dehydrogenase AMES_0250 PF00072 Response regulator receiver domain AMES_0251 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AMES_0251 PF17203 Single cache domain 3 AMES_0251 PF00989 PAS fold AMES_0251 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_0252 PF00005 ABC transporter AMES_0257 PF13191 AAA ATPase domain AMES_0257 PF00211 Adenylate and Guanylate cyclase catalytic domain AMES_0258 PF02983 Alpha-lytic protease prodomain AMES_0259 PF04686 Streptomyces sporulation and cell division protein, SsgA AMES_0260 PF01037 Lrp/AsnC ligand binding domain AMES_0261 PF00672 HAMP domain AMES_0261 PF00211 Adenylate and Guanylate cyclase catalytic domain AMES_0262 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMES_0262 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMES_0263 PF04072 Leucine carboxyl methyltransferase AMES_0264 PF00392 Bacterial regulatory proteins, gntR family AMES_0264 PF07729 FCD domain AMES_0267 PF00155 Aminotransferase class I and II AMES_0268 PF01738 Dienelactone hydrolase family AMES_0269 PF13193 AMP-binding enzyme C-terminal domain AMES_0269 PF00501 AMP-binding enzyme AMES_0270 PF16995 Transmembrane region of lysyl-tRNA synthetase AMES_0270 PF09924 Uncharacterised conserved protein (DUF2156) AMES_0270 PF00152 tRNA synthetases class II (D, K and N) AMES_0270 PF01336 OB-fold nucleic acid binding domain AMES_0272 PF00704 Glycosyl hydrolases family 18 AMES_0272 PF00553 Cellulose binding domain AMES_0272 PF00041 Fibronectin type III domain AMES_0274 PF00202 Aminotransferase class-III AMES_0275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMES_0275 PF03466 LysR substrate binding domain AMES_0279 PF06725 3D domain AMES_0279 PF07501 G5 domain AMES_0279 PF03990 G5-linked-Ubiquitin-like domain AMES_0281 PF00248 Aldo/keto reductase family AMES_0284 PF04545 Sigma-70, region 4 AMES_0284 PF04539 Sigma-70 region 3 AMES_0284 PF04542 Sigma-70 region 2 AMES_0285 PF13581 Histidine kinase-like ATPase domain AMES_0286 PF02467 Transcription factor WhiB AMES_0294 PF00005 ABC transporter AMES_0294 PF13732 Domain of unknown function (DUF4162) AMES_0305 PF02153 Prephenate dehydrogenase AMES_0306 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMES_0306 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMES_0310 PF01047 MarR family AMES_0311 PF07859 alpha/beta hydrolase fold AMES_0316 PF00206 Lyase AMES_0316 PF10397 Adenylosuccinate lyase C-terminus AMES_0317 PF06736 Protein of unknown function (DUF1211) AMES_0318 PF04978 Protein of unknown function (DUF664) AMES_0320 PF00625 Guanylate kinase AMES_0325 PF00300 Histidine phosphatase superfamily (branch 1) AMES_0331 PF00069 Protein kinase domain AMES_0333 PF00465 Iron-containing alcohol dehydrogenase AMES_0334 PF00205 Thiamine pyrophosphate enzyme, central domain AMES_0334 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMES_0334 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMES_0335 PF00313 'Cold-shock' DNA-binding domain AMES_0337 PF01513 ATP-NAD kinase AMES_0338 PF00676 Dehydrogenase E1 component AMES_0341 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMES_0342 PF00069 Protein kinase domain AMES_0342 PF16918 Protein kinase G tetratricopeptide repeat AMES_0342 PF16919 Protein kinase G rubredoxin domain AMES_0344 PF08946 Osmosensory transporter coiled coil AMES_0344 PF00083 Sugar (and other) transporter AMES_0345 PF08281 Sigma-70, region 4 AMES_0345 PF04542 Sigma-70 region 2 AMES_0347 PF17964 Bacterial Ig domain AMES_0347 PF03734 L,D-transpeptidase catalytic domain AMES_0348 PF00313 'Cold-shock' DNA-binding domain AMES_0352 PF14659 Phage integrase, N-terminal SAM-like domain AMES_0352 PF00589 Phage integrase family AMES_0353 PF12728 Helix-turn-helix domain AMES_0354 PF12307 Protein of unknown function (DUF3631) AMES_0361 PF00436 Single-strand binding protein family AMES_0370 PF04686 Streptomyces sporulation and cell division protein, SsgA AMES_0371 PF13344 Haloacid dehalogenase-like hydrolase AMES_0371 PF00293 NUDIX domain AMES_0379 PF13649 Methyltransferase domain AMES_0381 PF03707 Bacterial signalling protein N terminal repeat AMES_0381 PF00990 Diguanylate cyclase, GGDEF domain AMES_0381 PF00563 EAL domain AMES_0382 PF00797 N-acetyltransferase AMES_0386 PF00860 Permease family AMES_0388 PF01717 Cobalamin-independent synthase, Catalytic domain AMES_0390 PF09339 IclR helix-turn-helix domain AMES_0390 PF01614 Bacterial transcriptional regulator AMES_0391 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMES_0391 PF14759 Reductase C-terminal AMES_0392 PF01494 FAD binding domain AMES_0393 PF02861 Clp amino terminal domain, pathogenicity island component AMES_0394 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AMES_0394 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMES_0406 PF00561 alpha/beta hydrolase fold AMES_0408 PF09995 Uncharacterized protein conserved in bacteria (DUF2236) AMES_0410 PF01425 Amidase AMES_0412 PF00291 Pyridoxal-phosphate dependent enzyme AMES_0416 PF02861 Clp amino terminal domain, pathogenicity island component AMES_0417 PF00392 Bacterial regulatory proteins, gntR family AMES_0417 PF00155 Aminotransferase class I and II AMES_0419 PF00155 Aminotransferase class I and II AMES_0420 PF04286 Protein of unknown function (DUF445) AMES_0425 PF01202 Shikimate kinase AMES_0426 PF01381 Helix-turn-helix AMES_0428 PF10724 Protein of unknown function (DUF2516) AMES_0430 PF02423 Ornithine cyclodeaminase/mu-crystallin family AMES_0431 PF00221 Aromatic amino acid lyase AMES_0436 PF00528 Binding-protein-dependent transport system inner membrane component AMES_0438 PF08241 Methyltransferase domain AMES_0439 PF01047 MarR family AMES_0442 PF00107 Zinc-binding dehydrogenase AMES_0442 PF16884 N-terminal domain of oxidoreductase AMES_0444 PF08240 Alcohol dehydrogenase GroES-like domain AMES_0444 PF00107 Zinc-binding dehydrogenase AMES_0445 PF00551 Formyl transferase AMES_0450 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AMES_0450 PF01565 FAD binding domain AMES_0451 PF03734 L,D-transpeptidase catalytic domain AMES_0451 PF17964 Bacterial Ig domain AMES_0452 PF00561 alpha/beta hydrolase fold AMES_0453 PF13439 Glycosyltransferase Family 4 AMES_0453 PF00534 Glycosyl transferases group 1 AMES_0454 PF10722 Putative bacterial sensory transduction regulator AMES_0456 PF00300 Histidine phosphatase superfamily (branch 1) AMES_0458 PF00248 Aldo/keto reductase family AMES_0459 PF00512 His Kinase A (phospho-acceptor) domain AMES_0459 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_0460 PF00486 Transcriptional regulatory protein, C terminal AMES_0460 PF00072 Response regulator receiver domain AMES_0461 PF02541 Ppx/GppA phosphatase family AMES_0463 PF01261 Xylose isomerase-like TIM barrel AMES_0465 PF14748 Pyrroline-5-carboxylate reductase dimerisation AMES_0465 PF03807 NADP oxidoreductase coenzyme F420-dependent AMES_0466 PF12728 Helix-turn-helix domain AMES_0467 PF01370 NAD dependent epimerase/dehydratase family AMES_0468 PF01553 Acyltransferase AMES_0471 PF00196 Bacterial regulatory proteins, luxR family AMES_0471 PF00072 Response regulator receiver domain AMES_0474 PF04542 Sigma-70 region 2 AMES_0474 PF08281 Sigma-70, region 4 AMES_0475 PF00501 AMP-binding enzyme AMES_0475 PF13193 AMP-binding enzyme C-terminal domain AMES_0476 PF05768 Glutaredoxin-like domain (DUF836) AMES_0478 PF06971 Putative DNA-binding protein N-terminus AMES_0478 PF02629 CoA binding domain AMES_0479 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AMES_0479 PF01488 Shikimate / quinate 5-dehydrogenase AMES_0479 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AMES_0480 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AMES_0480 PF03900 Porphobilinogen deaminase, C-terminal domain AMES_0481 PF14824 Sirohaem biosynthesis protein central AMES_0481 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMES_0481 PF10414 Sirohaem synthase dimerisation region AMES_0482 PF16363 GDP-mannose 4,6 dehydratase AMES_0484 PF00490 Delta-aminolevulinic acid dehydratase AMES_0488 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMES_0489 PF02687 FtsX-like permease family AMES_0489 PF12704 MacB-like periplasmic core domain AMES_0489 PF00005 ABC transporter AMES_0490 PF02687 FtsX-like permease family AMES_0490 PF00005 ABC transporter AMES_0490 PF12704 MacB-like periplasmic core domain AMES_0493 PF00202 Aminotransferase class-III AMES_0494 PF00300 Histidine phosphatase superfamily (branch 1) AMES_0495 PF00578 AhpC/TSA family AMES_0496 PF02683 Cytochrome C biogenesis protein transmembrane region AMES_0498 PF01578 Cytochrome C assembly protein AMES_0499 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMES_0502 PF01037 Lrp/AsnC ligand binding domain AMES_0504 PF01040 UbiA prenyltransferase family AMES_0506 PF13193 AMP-binding enzyme C-terminal domain AMES_0506 PF00501 AMP-binding enzyme AMES_0507 PF00378 Enoyl-CoA hydratase/isomerase AMES_0508 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMES_0508 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMES_0509 PF11838 ERAP1-like C-terminal domain AMES_0509 PF01433 Peptidase family M1 domain AMES_0511 PF00459 Inositol monophosphatase family AMES_0512 PF00534 Glycosyl transferases group 1 AMES_0512 PF13439 Glycosyltransferase Family 4 AMES_0513 PF13579 Glycosyl transferase 4-like domain AMES_0513 PF00534 Glycosyl transferases group 1 AMES_0516 PF01209 ubiE/COQ5 methyltransferase family AMES_0517 PF01494 FAD binding domain AMES_0518 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AMES_0519 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AMES_0520 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AMES_0521 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AMES_0523 PF10531 SLBB domain AMES_0523 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMES_0523 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AMES_0524 PF00384 Molybdopterin oxidoreductase AMES_0524 PF01568 Molydopterin dinucleotide binding domain AMES_0524 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMES_0525 PF00146 NADH dehydrogenase AMES_0526 PF12838 4Fe-4S dicluster domain AMES_0527 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AMES_0528 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AMES_0529 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AMES_0529 PF00361 Proton-conducting membrane transporter AMES_0530 PF00361 Proton-conducting membrane transporter AMES_0531 PF00361 Proton-conducting membrane transporter AMES_0535 PF00348 Polyprenyl synthetase AMES_0538 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMES_0539 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AMES_0539 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AMES_0539 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AMES_0540 PF00378 Enoyl-CoA hydratase/isomerase AMES_0541 PF01037 Lrp/AsnC ligand binding domain AMES_0545 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMES_0545 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMES_0545 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMES_0546 PF00534 Glycosyl transferases group 1 AMES_0546 PF13439 Glycosyltransferase Family 4 AMES_0549 PF13537 Glutamine amidotransferase domain AMES_0549 PF00733 Asparagine synthase AMES_0550 PF00107 Zinc-binding dehydrogenase AMES_0554 PF13439 Glycosyltransferase Family 4 AMES_0554 PF00534 Glycosyl transferases group 1 AMES_0558 PF00202 Aminotransferase class-III AMES_0559 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AMES_0561 PF00535 Glycosyl transferase family 2 AMES_0563 PF16221 winged helix-turn-helix AMES_0563 PF16254 Domain of unknown function (DUF4910) AMES_0563 PF09940 Domain of unknown function (DUF2172) AMES_0564 PF16363 GDP-mannose 4,6 dehydratase AMES_0566 PF00483 Nucleotidyl transferase AMES_0567 PF08421 Putative zinc binding domain AMES_0567 PF08484 C-methyltransferase C-terminal domain AMES_0569 PF00296 Luciferase-like monooxygenase AMES_0571 PF01435 Peptidase family M48 AMES_0573 PF00483 Nucleotidyl transferase AMES_0577 PF04461 Protein of unknown function (DUF520) AMES_0579 PF08241 Methyltransferase domain AMES_0580 PF00004 ATPase family associated with various cellular activities (AAA) AMES_0580 PF05362 Lon protease (S16) C-terminal proteolytic domain AMES_0580 PF02190 ATP-dependent protease La (LON) substrate-binding domain AMES_0583 PF03707 Bacterial signalling protein N terminal repeat AMES_0583 PF00990 Diguanylate cyclase, GGDEF domain AMES_0583 PF00563 EAL domain AMES_0584 PF00471 Ribosomal protein L33 AMES_0585 PF13452 N-terminal half of MaoC dehydratase AMES_0589 PF00392 Bacterial regulatory proteins, gntR family AMES_0590 PF00296 Luciferase-like monooxygenase AMES_0591 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AMES_0592 PF02357 Transcription termination factor nusG AMES_0593 PF03946 Ribosomal protein L11, N-terminal domain AMES_0593 PF00298 Ribosomal protein L11, RNA binding domain AMES_0594 PF00687 Ribosomal protein L1p/L10e family AMES_0596 PF00561 alpha/beta hydrolase fold AMES_0597 PF00466 Ribosomal protein L10 AMES_0598 PF16320 Ribosomal protein L7/L12 dimerisation domain AMES_0598 PF00542 Ribosomal protein L7/L12 C-terminal domain AMES_0599 PF00005 ABC transporter AMES_0601 PF02405 Permease MlaE AMES_0606 PF02470 MlaD protein AMES_0611 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMES_0611 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMES_0614 PF00067 Cytochrome P450 AMES_0615 PF16197 Ketoacyl-synthetase C-terminal extension AMES_0615 PF00698 Acyl transferase domain AMES_0615 PF18369 Polyketide synthase dimerisation element domain AMES_0615 PF08659 KR domain AMES_0615 PF00109 Beta-ketoacyl synthase, N-terminal domain AMES_0615 PF00975 Thioesterase domain AMES_0615 PF02801 Beta-ketoacyl synthase, C-terminal domain AMES_0615 PF00550 Phosphopantetheine attachment site AMES_0615 PF08990 Erythronolide synthase docking AMES_0616 PF14765 Polyketide synthase dehydratase AMES_0616 PF08659 KR domain AMES_0616 PF00698 Acyl transferase domain AMES_0616 PF16197 Ketoacyl-synthetase C-terminal extension AMES_0616 PF00109 Beta-ketoacyl synthase, N-terminal domain AMES_0616 PF00550 Phosphopantetheine attachment site AMES_0616 PF02801 Beta-ketoacyl synthase, C-terminal domain AMES_0617 PF00698 Acyl transferase domain AMES_0617 PF00550 Phosphopantetheine attachment site AMES_0617 PF00550 Phosphopantetheine attachment site AMES_0617 PF08659 KR domain AMES_0617 PF08990 Erythronolide synthase docking AMES_0617 PF02801 Beta-ketoacyl synthase, C-terminal domain AMES_0617 PF00109 Beta-ketoacyl synthase, N-terminal domain AMES_0617 PF16197 Ketoacyl-synthetase C-terminal extension AMES_0617 PF08990 Erythronolide synthase docking AMES_0617 PF08240 Alcohol dehydrogenase GroES-like domain AMES_0617 PF00698 Acyl transferase domain AMES_0617 PF08659 KR domain AMES_0617 PF08240 Alcohol dehydrogenase GroES-like domain AMES_0617 PF14765 Polyketide synthase dehydratase AMES_0617 PF02801 Beta-ketoacyl synthase, C-terminal domain AMES_0617 PF14765 Polyketide synthase dehydratase AMES_0617 PF00109 Beta-ketoacyl synthase, N-terminal domain AMES_0617 PF16197 Ketoacyl-synthetase C-terminal extension AMES_0618 PF14765 Polyketide synthase dehydratase AMES_0618 PF02801 Beta-ketoacyl synthase, C-terminal domain AMES_0618 PF00550 Phosphopantetheine attachment site AMES_0618 PF00109 Beta-ketoacyl synthase, N-terminal domain AMES_0618 PF00550 Phosphopantetheine attachment site AMES_0618 PF14765 Polyketide synthase dehydratase AMES_0618 PF02801 Beta-ketoacyl synthase, C-terminal domain AMES_0618 PF00698 Acyl transferase domain AMES_0618 PF00698 Acyl transferase domain AMES_0618 PF08240 Alcohol dehydrogenase GroES-like domain AMES_0618 PF08659 KR domain AMES_0618 PF08990 Erythronolide synthase docking AMES_0618 PF08659 KR domain AMES_0618 PF08240 Alcohol dehydrogenase GroES-like domain AMES_0618 PF08990 Erythronolide synthase docking AMES_0618 PF16197 Ketoacyl-synthetase C-terminal extension AMES_0618 PF16197 Ketoacyl-synthetase C-terminal extension AMES_0618 PF00109 Beta-ketoacyl synthase, N-terminal domain AMES_0619 PF08659 KR domain AMES_0619 PF00550 Phosphopantetheine attachment site AMES_0619 PF02801 Beta-ketoacyl synthase, C-terminal domain AMES_0619 PF00109 Beta-ketoacyl synthase, N-terminal domain AMES_0619 PF00698 Acyl transferase domain AMES_0619 PF16197 Ketoacyl-synthetase C-terminal extension AMES_0619 PF08990 Erythronolide synthase docking AMES_0619 PF08240 Alcohol dehydrogenase GroES-like domain AMES_0619 PF14765 Polyketide synthase dehydratase AMES_0620 PF00797 N-acetyltransferase AMES_0622 PF01761 3-dehydroquinate synthase AMES_0623 PF01474 Class-II DAHP synthetase family AMES_0624 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AMES_0624 PF08501 Shikimate dehydrogenase substrate binding domain AMES_0625 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMES_0626 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMES_0626 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMES_0627 PF13419 Haloacid dehalogenase-like hydrolase AMES_0628 PF00480 ROK family AMES_0629 PF02585 GlcNAc-PI de-N-acetylase AMES_0630 PF07859 alpha/beta hydrolase fold AMES_0631 PF07690 Major Facilitator Superfamily AMES_0634 PF00067 Cytochrome P450 AMES_0635 PF00067 Cytochrome P450 AMES_0636 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMES_0637 PF06722 Protein of unknown function (DUF1205) AMES_0638 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AMES_0639 PF00202 Aminotransferase class-III AMES_0640 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMES_0642 PF00296 Luciferase-like monooxygenase AMES_0643 PF03559 NDP-hexose 2,3-dehydratase AMES_0644 PF01494 FAD binding domain AMES_0646 PF00975 Thioesterase domain AMES_0647 PF00067 Cytochrome P450 AMES_0648 PF08241 Methyltransferase domain AMES_0649 PF00456 Transketolase, thiamine diphosphate binding domain AMES_0650 PF02779 Transketolase, pyrimidine binding domain AMES_0651 PF00067 Cytochrome P450 AMES_0652 PF01220 Dehydroquinase class II AMES_0653 PF00196 Bacterial regulatory proteins, luxR family AMES_0654 PF10385 RNA polymerase beta subunit external 1 domain AMES_0654 PF04565 RNA polymerase Rpb2, domain 3 AMES_0654 PF04560 RNA polymerase Rpb2, domain 7 AMES_0654 PF04561 RNA polymerase Rpb2, domain 2 AMES_0654 PF04563 RNA polymerase beta subunit AMES_0654 PF00562 RNA polymerase Rpb2, domain 6 AMES_0655 PF04998 RNA polymerase Rpb1, domain 5 AMES_0655 PF04983 RNA polymerase Rpb1, domain 3 AMES_0655 PF00623 RNA polymerase Rpb1, domain 2 AMES_0655 PF04997 RNA polymerase Rpb1, domain 1 AMES_0655 PF05000 RNA polymerase Rpb1, domain 4 AMES_0657 PF01427 D-ala-D-ala dipeptidase AMES_0658 PF01037 Lrp/AsnC ligand binding domain AMES_0659 PF07690 Major Facilitator Superfamily AMES_0661 PF00027 Cyclic nucleotide-binding domain AMES_0661 PF13302 Acetyltransferase (GNAT) domain AMES_0670 PF00164 Ribosomal protein S12/S23 AMES_0671 PF00177 Ribosomal protein S7p/S5e AMES_0672 PF03144 Elongation factor Tu domain 2 AMES_0672 PF00009 Elongation factor Tu GTP binding domain AMES_0672 PF03764 Elongation factor G, domain IV AMES_0672 PF14492 Elongation Factor G, domain II AMES_0672 PF00679 Elongation factor G C-terminus AMES_0673 PF03143 Elongation factor Tu C-terminal domain AMES_0673 PF03144 Elongation factor Tu domain 2 AMES_0673 PF00009 Elongation factor Tu GTP binding domain AMES_0674 PF00338 Ribosomal protein S10p/S20e AMES_0675 PF00297 Ribosomal protein L3 AMES_0676 PF00573 Ribosomal protein L4/L1 family AMES_0677 PF00276 Ribosomal protein L23 AMES_0678 PF03947 Ribosomal Proteins L2, C-terminal domain AMES_0678 PF00181 Ribosomal Proteins L2, RNA binding domain AMES_0679 PF00203 Ribosomal protein S19 AMES_0680 PF00237 Ribosomal protein L22p/L17e AMES_0681 PF07650 KH domain AMES_0681 PF00189 Ribosomal protein S3, C-terminal domain AMES_0682 PF00252 Ribosomal protein L16p/L10e AMES_0683 PF00831 Ribosomal L29 protein AMES_0684 PF00366 Ribosomal protein S17 AMES_0685 PF00238 Ribosomal protein L14p/L23e AMES_0686 PF00467 KOW motif AMES_0686 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AMES_0687 PF00281 Ribosomal protein L5 AMES_0687 PF00673 ribosomal L5P family C-terminus AMES_0688 PF00253 Ribosomal protein S14p/S29e AMES_0689 PF00410 Ribosomal protein S8 AMES_0690 PF00347 Ribosomal protein L6 AMES_0691 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AMES_0692 PF00333 Ribosomal protein S5, N-terminal domain AMES_0692 PF03719 Ribosomal protein S5, C-terminal domain AMES_0693 PF00327 Ribosomal protein L30p/L7e AMES_0694 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AMES_0696 PF01810 LysE type translocator AMES_0697 PF00344 SecY translocase AMES_0699 PF00557 Metallopeptidase family M24 AMES_0700 PF01176 Translation initiation factor 1A / IF-1 AMES_0701 PF00444 Ribosomal protein L36 AMES_0702 PF00416 Ribosomal protein S13/S18 AMES_0704 PF00411 Ribosomal protein S11 AMES_0705 PF01479 S4 domain AMES_0705 PF00163 Ribosomal protein S4/S9 N-terminal domain AMES_0706 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AMES_0706 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AMES_0706 PF01000 RNA polymerase Rpb3/RpoA insert domain AMES_0707 PF01196 Ribosomal protein L17 AMES_0708 PF01416 tRNA pseudouridine synthase AMES_0712 PF05108 Type VII secretion system ESX-1, transport TM domain B AMES_0715 PF00082 Subtilase family AMES_0717 PF01580 FtsK/SpoIIIE family AMES_0718 PF00012 Hsp70 protein AMES_0722 PF14230 Domain of unknown function (DUF4333) AMES_0724 PF00572 Ribosomal protein L13 AMES_0725 PF00380 Ribosomal protein S9/S16 AMES_0727 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMES_0727 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMES_0727 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMES_0727 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMES_0728 PF00501 AMP-binding enzyme AMES_0734 PF01380 SIS domain AMES_0735 PF01256 Carbohydrate kinase AMES_0735 PF03853 YjeF-related protein N-terminus AMES_0736 PF00455 DeoR C terminal sensor domain AMES_0736 PF08220 DeoR-like helix-turn-helix domain AMES_0737 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMES_0737 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMES_0738 PF00005 ABC transporter AMES_0738 PF08402 TOBE domain AMES_0739 PF00842 Alanine racemase, C-terminal domain AMES_0739 PF01168 Alanine racemase, N-terminal domain AMES_0740 PF00364 Biotin-requiring enzyme AMES_0740 PF00561 alpha/beta hydrolase fold AMES_0741 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AMES_0743 PF17848 Acetyl-coA carboxylase zinc finger domain AMES_0743 PF01039 Carboxyl transferase domain AMES_0743 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AMES_0744 PF00501 AMP-binding enzyme AMES_0744 PF13193 AMP-binding enzyme C-terminal domain AMES_0745 PF00814 Glycoprotease family AMES_0746 PF00583 Acetyltransferase (GNAT) family AMES_0747 PF00814 Glycoprotease family AMES_0748 PF02350 UDP-N-acetylglucosamine 2-epimerase AMES_0754 PF13847 Methyltransferase domain AMES_0755 PF01022 Bacterial regulatory protein, arsR family AMES_0756 PF01451 Low molecular weight phosphotyrosine protein phosphatase AMES_0757 PF01758 Sodium Bile acid symporter family AMES_0758 PF01022 Bacterial regulatory protein, arsR family AMES_0759 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMES_0760 PF00166 Chaperonin 10 Kd subunit AMES_0761 PF00118 TCP-1/cpn60 chaperonin family AMES_0762 PF02467 Transcription factor WhiB AMES_0765 PF00072 Response regulator receiver domain AMES_0765 PF00196 Bacterial regulatory proteins, luxR family AMES_0766 PF04542 Sigma-70 region 2 AMES_0766 PF08281 Sigma-70, region 4 AMES_0768 PF17252 Family of unknown function (DUF5319) AMES_0769 PF00478 IMP dehydrogenase / GMP reductase domain AMES_0769 PF00571 CBS domain AMES_0772 PF00478 IMP dehydrogenase / GMP reductase domain AMES_0773 PF05199 GMC oxidoreductase AMES_0775 PF01565 FAD binding domain AMES_0775 PF08031 Berberine and berberine like AMES_0776 PF00171 Aldehyde dehydrogenase family AMES_0777 PF13823 Alcohol dehydrogenase GroES-associated AMES_0777 PF00107 Zinc-binding dehydrogenase AMES_0777 PF08240 Alcohol dehydrogenase GroES-like domain AMES_0780 PF00958 GMP synthase C terminal domain AMES_0780 PF00117 Glutamine amidotransferase class-I AMES_0780 PF02540 NAD synthase AMES_0786 PF00892 EamA-like transporter family AMES_0787 PF00196 Bacterial regulatory proteins, luxR family AMES_0787 PF00072 Response regulator receiver domain AMES_0788 PF13191 AAA ATPase domain AMES_0788 PF00069 Protein kinase domain AMES_0789 PF03466 LysR substrate binding domain AMES_0789 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMES_0790 PF03793 PASTA domain AMES_0790 PF00069 Protein kinase domain AMES_0794 PF01817 Chorismate mutase type II AMES_0796 PF13361 UvrD-like helicase C-terminal domain AMES_0796 PF00580 UvrD/REP helicase N-terminal domain AMES_0797 PF01551 Peptidase family M23 AMES_0797 PF01476 LysM domain AMES_0800 PF00549 CoA-ligase AMES_0800 PF08442 ATP-grasp domain AMES_0801 PF02629 CoA binding domain AMES_0801 PF00549 CoA-ligase AMES_0804 PF00551 Formyl transferase AMES_0805 PF02142 MGS-like domain AMES_0805 PF01808 AICARFT/IMPCHase bienzyme AMES_0814 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AMES_0814 PF07733 Bacterial DNA polymerase III alpha NTPase domain AMES_0814 PF01336 OB-fold nucleic acid binding domain AMES_0814 PF02811 PHP domain AMES_0814 PF14579 Helix-hairpin-helix motif AMES_0817 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AMES_0817 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AMES_0819 PF07690 Major Facilitator Superfamily AMES_0820 PF01022 Bacterial regulatory protein, arsR family AMES_0822 PF07690 Major Facilitator Superfamily AMES_0823 PF00588 SpoU rRNA Methylase family AMES_0823 PF12105 SpoU, rRNA methylase, C-terminal AMES_0828 PF08241 Methyltransferase domain AMES_0831 PF00180 Isocitrate/isopropylmalate dehydrogenase AMES_0835 PF12706 Beta-lactamase superfamily domain AMES_0838 PF00579 tRNA synthetases class I (W and Y) AMES_0840 PF03631 Virulence factor BrkB AMES_0843 PF01638 HxlR-like helix-turn-helix AMES_0845 PF00082 Subtilase family AMES_0847 PF13085 2Fe-2S iron-sulfur cluster binding domain AMES_0848 PF02910 Fumarate reductase flavoprotein C-term AMES_0848 PF00890 FAD binding domain AMES_0850 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AMES_0851 PF16499 Alpha galactosidase A AMES_0851 PF17801 Alpha galactosidase C-terminal beta sandwich domain AMES_0852 PF14508 Glycosyl-hydrolase 97 N-terminal AMES_0852 PF10566 Glycoside hydrolase 97 AMES_0852 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation AMES_0857 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMES_0858 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AMES_0858 PF02885 Glycosyl transferase family, helical bundle domain AMES_0858 PF00591 Glycosyl transferase family, a/b domain AMES_0860 PF00962 Adenosine/AMP deaminase AMES_0861 PF07690 Major Facilitator Superfamily AMES_0863 PF08148 DSHCT (NUC185) domain AMES_0863 PF00271 Helicase conserved C-terminal domain AMES_0863 PF00270 DEAD/DEAH box helicase AMES_0865 PF01638 HxlR-like helix-turn-helix AMES_0867 PF08240 Alcohol dehydrogenase GroES-like domain AMES_0867 PF00107 Zinc-binding dehydrogenase AMES_0869 PF00528 Binding-protein-dependent transport system inner membrane component AMES_0870 PF00528 Binding-protein-dependent transport system inner membrane component AMES_0871 PF00975 Thioesterase domain AMES_0872 PF00067 Cytochrome P450 AMES_0873 PF00067 Cytochrome P450 AMES_0877 PF00171 Aldehyde dehydrogenase family AMES_0878 PF00171 Aldehyde dehydrogenase family AMES_0879 PF01791 DeoC/LacD family aldolase AMES_0884 PF04542 Sigma-70 region 2 AMES_0884 PF04545 Sigma-70, region 4 AMES_0887 PF09278 MerR, DNA binding AMES_0887 PF00376 MerR family regulatory protein AMES_0888 PF00248 Aldo/keto reductase family AMES_0890 PF01070 FMN-dependent dehydrogenase AMES_0892 PF00999 Sodium/hydrogen exchanger family AMES_0893 PF00072 Response regulator receiver domain AMES_0893 PF00486 Transcriptional regulatory protein, C terminal AMES_0894 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_0894 PF00672 HAMP domain AMES_0894 PF00512 His Kinase A (phospho-acceptor) domain AMES_0896 PF03129 Anticodon binding domain AMES_0896 PF13393 Histidyl-tRNA synthetase AMES_0898 PF01979 Amidohydrolase family AMES_0903 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMES_0903 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMES_0903 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMES_0903 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMES_0905 PF01048 Phosphorylase superfamily AMES_0908 PF00069 Protein kinase domain AMES_0910 PF01642 Methylmalonyl-CoA mutase AMES_0911 PF02310 B12 binding domain AMES_0911 PF01642 Methylmalonyl-CoA mutase AMES_0914 PF04107 Glutamate-cysteine ligase family 2(GCS2) AMES_0914 PF01546 Peptidase family M20/M25/M40 AMES_0917 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMES_0917 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMES_0921 PF18029 Glyoxalase-like domain AMES_0921 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMES_0922 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMES_0922 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMES_0923 PF00230 Major intrinsic protein AMES_0924 PF01266 FAD dependent oxidoreductase AMES_0924 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AMES_0931 PF00289 Biotin carboxylase, N-terminal domain AMES_0931 PF02785 Biotin carboxylase C-terminal domain AMES_0931 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMES_0931 PF00364 Biotin-requiring enzyme AMES_0934 PF00375 Sodium:dicarboxylate symporter family AMES_0935 PF02545 Maf-like protein AMES_0936 PF14310 Fibronectin type III-like domain AMES_0936 PF00933 Glycosyl hydrolase family 3 N terminal domain AMES_0936 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMES_0937 PF07690 Major Facilitator Superfamily AMES_0940 PF00296 Luciferase-like monooxygenase AMES_0942 PF01047 MarR family AMES_0943 PF01039 Carboxyl transferase domain AMES_0944 PF00196 Bacterial regulatory proteins, luxR family AMES_0944 PF00072 Response regulator receiver domain AMES_0946 PF07730 Histidine kinase AMES_0949 PF00440 Bacterial regulatory proteins, tetR family AMES_0951 PF01638 HxlR-like helix-turn-helix AMES_0952 PF01494 FAD binding domain AMES_0955 PF12833 Helix-turn-helix domain AMES_0955 PF01965 DJ-1/PfpI family AMES_0956 PF03466 LysR substrate binding domain AMES_0956 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMES_0960 PF01209 ubiE/COQ5 methyltransferase family AMES_0961 PF08281 Sigma-70, region 4 AMES_0961 PF04542 Sigma-70 region 2 AMES_0963 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMES_0963 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMES_0966 PF07730 Histidine kinase AMES_0967 PF00196 Bacterial regulatory proteins, luxR family AMES_0967 PF00072 Response regulator receiver domain AMES_0968 PF01476 LysM domain AMES_0968 PF08239 Bacterial SH3 domain AMES_0968 PF00877 NlpC/P60 family AMES_0969 PF02237 Biotin protein ligase C terminal domain AMES_0969 PF03099 Biotin/lipoate A/B protein ligase family AMES_0971 PF00682 HMGL-like AMES_0974 PF17678 Glycosyl hydrolase family 92 N-terminal domain AMES_0974 PF07971 Glycosyl hydrolase family 92 AMES_0975 PF00459 Inositol monophosphatase family AMES_0976 PF00072 Response regulator receiver domain AMES_0976 PF00486 Transcriptional regulatory protein, C terminal AMES_0977 PF00512 His Kinase A (phospho-acceptor) domain AMES_0977 PF00672 HAMP domain AMES_0977 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_0978 PF00196 Bacterial regulatory proteins, luxR family AMES_0978 PF00072 Response regulator receiver domain AMES_0979 PF00196 Bacterial regulatory proteins, luxR family AMES_0979 PF00072 Response regulator receiver domain AMES_0981 PF07690 Major Facilitator Superfamily AMES_0986 PF09594 Glycosyltransferase family 87 AMES_0987 PF09594 Glycosyltransferase family 87 AMES_0988 PF02222 ATP-grasp domain AMES_0988 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AMES_0989 PF00731 AIR carboxylase AMES_0991 PF00501 AMP-binding enzyme AMES_0991 PF13193 AMP-binding enzyme C-terminal domain AMES_0993 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_0993 PF02770 Acyl-CoA dehydrogenase, middle domain AMES_0993 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_0995 PF00561 alpha/beta hydrolase fold AMES_1000 PF03816 Cell envelope-related transcriptional attenuator domain AMES_1000 PF13399 LytR cell envelope-related transcriptional attenuator AMES_1002 PF13399 LytR cell envelope-related transcriptional attenuator AMES_1002 PF03816 Cell envelope-related transcriptional attenuator domain AMES_1003 PF16363 GDP-mannose 4,6 dehydratase AMES_1004 PF00534 Glycosyl transferases group 1 AMES_1004 PF13439 Glycosyltransferase Family 4 AMES_1005 PF04321 RmlD substrate binding domain AMES_1008 PF13439 Glycosyltransferase Family 4 AMES_1008 PF00534 Glycosyl transferases group 1 AMES_1012 PF00483 Nucleotidyl transferase AMES_1015 PF00392 Bacterial regulatory proteins, gntR family AMES_1018 PF00881 Nitroreductase family AMES_1018 PF01996 F420-0:Gamma-glutamyl ligase AMES_1022 PF00037 4Fe-4S binding domain AMES_1024 PF00155 Aminotransferase class I and II AMES_1025 PF01494 FAD binding domain AMES_1027 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle AMES_1027 PF14602 Hexapeptide repeat of succinyl-transferase AMES_1029 PF07687 Peptidase dimerisation domain AMES_1029 PF01546 Peptidase family M20/M25/M40 AMES_1032 PF01483 Proprotein convertase P-domain AMES_1032 PF04389 Peptidase family M28 AMES_1033 PF02868 Thermolysin metallopeptidase, alpha-helical domain AMES_1033 PF01447 Thermolysin metallopeptidase, catalytic domain AMES_1033 PF04389 Peptidase family M28 AMES_1035 PF04389 Peptidase family M28 AMES_1035 PF01447 Thermolysin metallopeptidase, catalytic domain AMES_1035 PF02868 Thermolysin metallopeptidase, alpha-helical domain AMES_1037 PF03641 Possible lysine decarboxylase AMES_1038 PF03641 Possible lysine decarboxylase AMES_1042 PF01757 Acyltransferase family AMES_1045 PF00664 ABC transporter transmembrane region AMES_1045 PF00005 ABC transporter AMES_1046 PF00535 Glycosyl transferase family 2 AMES_1047 PF00664 ABC transporter transmembrane region AMES_1047 PF00005 ABC transporter AMES_1048 PF02322 Cytochrome bd terminal oxidase subunit II AMES_1049 PF01654 Cytochrome bd terminal oxidase subunit I AMES_1054 PF03352 Methyladenine glycosylase AMES_1055 PF00378 Enoyl-CoA hydratase/isomerase AMES_1057 PF03466 LysR substrate binding domain AMES_1057 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMES_1058 PF00883 Cytosol aminopeptidase family, catalytic domain AMES_1058 PF02789 Cytosol aminopeptidase family, N-terminal domain AMES_1059 PF07690 Major Facilitator Superfamily AMES_1061 PF01596 O-methyltransferase AMES_1062 PF04542 Sigma-70 region 2 AMES_1062 PF08281 Sigma-70, region 4 AMES_1064 PF00595 PDZ domain AMES_1064 PF13180 PDZ domain AMES_1065 PF02416 mttA/Hcf106 family AMES_1066 PF01883 Iron-sulfur cluster assembly protein AMES_1066 PF10609 NUBPL iron-transfer P-loop NTPase AMES_1068 PF01769 Divalent cation transporter AMES_1068 PF00571 CBS domain AMES_1068 PF03448 MgtE intracellular N domain AMES_1069 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase AMES_1071 PF01145 SPFH domain / Band 7 family AMES_1073 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_1073 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_1073 PF02770 Acyl-CoA dehydrogenase, middle domain AMES_1075 PF01547 Bacterial extracellular solute-binding protein AMES_1076 PF00528 Binding-protein-dependent transport system inner membrane component AMES_1077 PF00528 Binding-protein-dependent transport system inner membrane component AMES_1078 PF00005 ABC transporter AMES_1078 PF17912 MalK OB fold domain AMES_1081 PF17925 Tetracyclin repressor-like, C-terminal domain AMES_1081 PF00440 Bacterial regulatory proteins, tetR family AMES_1082 PF07690 Major Facilitator Superfamily AMES_1083 PF00196 Bacterial regulatory proteins, luxR family AMES_1083 PF00072 Response regulator receiver domain AMES_1084 PF07730 Histidine kinase AMES_1086 PF04542 Sigma-70 region 2 AMES_1086 PF04545 Sigma-70, region 4 AMES_1090 PF01544 CorA-like Mg2+ transporter protein AMES_1093 PF13344 Haloacid dehalogenase-like hydrolase AMES_1093 PF00293 NUDIX domain AMES_1096 PF02811 PHP domain AMES_1097 PF01914 MarC family integral membrane protein AMES_1102 PF00270 DEAD/DEAH box helicase AMES_1102 PF00271 Helicase conserved C-terminal domain AMES_1106 PF00440 Bacterial regulatory proteins, tetR family AMES_1108 PF12697 Alpha/beta hydrolase family AMES_1109 PF08362 YcdC-like protein, C-terminal region AMES_1109 PF00440 Bacterial regulatory proteins, tetR family AMES_1110 PF12697 Alpha/beta hydrolase family AMES_1112 PF00899 ThiF family AMES_1112 PF00581 Rhodanese-like domain AMES_1114 PF01568 Molydopterin dinucleotide binding domain AMES_1114 PF00384 Molybdopterin oxidoreductase AMES_1114 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMES_1115 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMES_1115 PF18267 Rubredoxin NAD+ reductase C-terminal domain AMES_1115 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMES_1115 PF04324 BFD-like [2Fe-2S] binding domain AMES_1115 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMES_1116 PF07690 Major Facilitator Superfamily AMES_1117 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMES_1117 PF18267 Rubredoxin NAD+ reductase C-terminal domain AMES_1117 PF13806 Rieske-like [2Fe-2S] domain AMES_1117 PF04324 BFD-like [2Fe-2S] binding domain AMES_1117 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMES_1117 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMES_1118 PF18267 Rubredoxin NAD+ reductase C-terminal domain AMES_1118 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMES_1118 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMES_1118 PF04324 BFD-like [2Fe-2S] binding domain AMES_1118 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMES_1118 PF13806 Rieske-like [2Fe-2S] domain AMES_1123 PF08279 HTH domain AMES_1123 PF13280 WYL domain AMES_1126 PF13361 UvrD-like helicase C-terminal domain AMES_1126 PF00580 UvrD/REP helicase N-terminal domain AMES_1127 PF00580 UvrD/REP helicase N-terminal domain AMES_1127 PF13361 UvrD-like helicase C-terminal domain AMES_1130 PF04228 Putative neutral zinc metallopeptidase AMES_1134 PF14258 Domain of unknown function (DUF4350) AMES_1135 PF17863 AAA lid domain AMES_1135 PF07726 ATPase family associated with various cellular activities (AAA) AMES_1140 PF04228 Putative neutral zinc metallopeptidase AMES_1144 PF00675 Insulinase (Peptidase family M16) AMES_1144 PF05193 Peptidase M16 inactive domain AMES_1145 PF00293 NUDIX domain AMES_1145 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain AMES_1145 PF09297 NADH pyrophosphatase zinc ribbon domain AMES_1146 PF01047 MarR family AMES_1146 PF00480 ROK family AMES_1148 PF00528 Binding-protein-dependent transport system inner membrane component AMES_1149 PF00528 Binding-protein-dependent transport system inner membrane component AMES_1150 PF02056 Family 4 glycosyl hydrolase AMES_1150 PF11975 Family 4 glycosyl hydrolase C-terminal domain AMES_1153 PF01022 Bacterial regulatory protein, arsR family AMES_1155 PF02447 GntP family permease AMES_1158 PF03186 CobD/Cbib protein AMES_1161 PF02104 SURF1 family AMES_1162 PF01451 Low molecular weight phosphotyrosine protein phosphatase AMES_1164 PF01817 Chorismate mutase type II AMES_1165 PF01784 NIF3 (NGG1p interacting factor 3) AMES_1166 PF02591 C4-type zinc ribbon domain AMES_1167 PF13456 Reverse transcriptase-like AMES_1167 PF00300 Histidine phosphatase superfamily (branch 1) AMES_1168 PF02040 Arsenical pump membrane protein AMES_1170 PF00072 Response regulator receiver domain AMES_1170 PF00196 Bacterial regulatory proteins, luxR family AMES_1172 PF04542 Sigma-70 region 2 AMES_1172 PF04545 Sigma-70, region 4 AMES_1175 PF14759 Reductase C-terminal AMES_1175 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMES_1182 PF00877 NlpC/P60 family AMES_1186 PF17876 Cold shock domain AMES_1186 PF08461 Ribonuclease R winged-helix domain AMES_1186 PF08206 Ribonuclease B OB domain AMES_1186 PF00773 RNB domain AMES_1187 PF00171 Aldehyde dehydrogenase family AMES_1188 PF01497 Periplasmic binding protein AMES_1189 PF00202 Aminotransferase class-III AMES_1193 PF00392 Bacterial regulatory proteins, gntR family AMES_1193 PF07729 FCD domain AMES_1194 PF00171 Aldehyde dehydrogenase family AMES_1195 PF08402 TOBE domain AMES_1195 PF00005 ABC transporter AMES_1196 PF13416 Bacterial extracellular solute-binding protein AMES_1197 PF00528 Binding-protein-dependent transport system inner membrane component AMES_1198 PF00528 Binding-protein-dependent transport system inner membrane component AMES_1199 PF00561 alpha/beta hydrolase fold AMES_1200 PF02673 Bacitracin resistance protein BacA AMES_1202 PF02548 Ketopantoate hydroxymethyltransferase AMES_1203 PF01336 OB-fold nucleic acid binding domain AMES_1203 PF16995 Transmembrane region of lysyl-tRNA synthetase AMES_1203 PF00152 tRNA synthetases class II (D, K and N) AMES_1203 PF09924 Uncharacterised conserved protein (DUF2156) AMES_1205 PF04978 Protein of unknown function (DUF664) AMES_1207 PF02540 NAD synthase AMES_1207 PF00795 Carbon-nitrogen hydrolase AMES_1209 PF07517 SecA DEAD-like domain AMES_1209 PF07516 SecA Wing and Scaffold domain AMES_1209 PF01043 SecA preprotein cross-linking domain AMES_1210 PF00561 alpha/beta hydrolase fold AMES_1213 PF00120 Glutamine synthetase, catalytic domain AMES_1213 PF03951 Glutamine synthetase, beta-Grasp domain AMES_1214 PF01425 Amidase AMES_1215 PF01037 Lrp/AsnC ligand binding domain AMES_1217 PF00117 Glutamine amidotransferase class-I AMES_1217 PF02540 NAD synthase AMES_1217 PF00958 GMP synthase C terminal domain AMES_1218 PF01384 Phosphate transporter family AMES_1219 PF01384 Phosphate transporter family AMES_1220 PF08335 GlnD PII-uridylyltransferase AMES_1220 PF03710 Glutamate-ammonia ligase adenylyltransferase AMES_1222 PF00120 Glutamine synthetase, catalytic domain AMES_1222 PF03951 Glutamine synthetase, beta-Grasp domain AMES_1225 PF13829 Domain of unknown function (DUF4191) AMES_1226 PF13361 UvrD-like helicase C-terminal domain AMES_1226 PF00580 UvrD/REP helicase N-terminal domain AMES_1226 PF00570 HRDC domain AMES_1228 PF02467 Transcription factor WhiB AMES_1233 PF03109 ABC1 family AMES_1238 PF13180 PDZ domain AMES_1238 PF05362 Lon protease (S16) C-terminal proteolytic domain AMES_1239 PF03699 Uncharacterised protein family (UPF0182) AMES_1240 PF01494 FAD binding domain AMES_1241 PF02909 Tetracyclin repressor-like, C-terminal domain AMES_1241 PF00440 Bacterial regulatory proteins, tetR family AMES_1243 PF03462 PCRF domain AMES_1243 PF00472 RF-1 domain AMES_1244 PF00005 ABC transporter AMES_1245 PF02687 FtsX-like permease family AMES_1245 PF18075 FtsX extracellular domain AMES_1246 PF01668 SmpB protein AMES_1250 PF00072 Response regulator receiver domain AMES_1250 PF00196 Bacterial regulatory proteins, luxR family AMES_1252 PF07730 Histidine kinase AMES_1252 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_1254 PF17151 Periplasmic sensor domain AMES_1254 PF00990 Diguanylate cyclase, GGDEF domain AMES_1257 PF00221 Aromatic amino acid lyase AMES_1258 PF17392 Urocanase C-terminal domain AMES_1258 PF01175 Urocanase Rossmann-like domain AMES_1258 PF17391 Urocanase N-terminal domain AMES_1259 PF01546 Peptidase family M20/M25/M40 AMES_1259 PF07687 Peptidase dimerisation domain AMES_1260 PF01979 Amidohydrolase family AMES_1261 PF01979 Amidohydrolase family AMES_1263 PF01494 FAD binding domain AMES_1265 PF01384 Phosphate transporter family AMES_1269 PF07730 Histidine kinase AMES_1270 PF01494 FAD binding domain AMES_1271 PF00196 Bacterial regulatory proteins, luxR family AMES_1271 PF00072 Response regulator receiver domain AMES_1275 PF00005 ABC transporter AMES_1276 PF04408 Helicase associated domain (HA2) AMES_1276 PF00271 Helicase conserved C-terminal domain AMES_1276 PF08482 ATP-dependent helicase C-terminal AMES_1276 PF00270 DEAD/DEAH box helicase AMES_1277 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMES_1279 PF00069 Protein kinase domain AMES_1279 PF13462 Thioredoxin AMES_1281 PF00877 NlpC/P60 family AMES_1283 PF01494 FAD binding domain AMES_1286 PF04978 Protein of unknown function (DUF664) AMES_1287 PF00933 Glycosyl hydrolase family 3 N terminal domain AMES_1287 PF14310 Fibronectin type III-like domain AMES_1287 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMES_1289 PF00521 DNA gyrase/topoisomerase IV, subunit A AMES_1289 PF03989 DNA gyrase C-terminal domain, beta-propeller AMES_1290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_1290 PF00986 DNA gyrase B subunit, carboxyl terminus AMES_1290 PF00204 DNA gyrase B AMES_1290 PF01751 Toprim domain AMES_1293 PF03358 NADPH-dependent FMN reductase AMES_1299 PF02653 Branched-chain amino acid transport system / permease component AMES_1300 PF02653 Branched-chain amino acid transport system / permease component AMES_1301 PF00005 ABC transporter AMES_1302 PF13407 Periplasmic binding protein domain AMES_1303 PF00356 Bacterial regulatory proteins, lacI family AMES_1304 PF02463 RecF/RecN/SMC N terminal domain AMES_1305 PF01638 HxlR-like helix-turn-helix AMES_1307 PF13305 Tetracyclin repressor-like, C-terminal domain AMES_1307 PF00440 Bacterial regulatory proteins, tetR family AMES_1310 PF17755 UvrA DNA-binding domain AMES_1310 PF00005 ABC transporter AMES_1310 PF17760 UvrA interaction domain AMES_1316 PF12706 Beta-lactamase superfamily domain AMES_1319 PF02983 Alpha-lytic protease prodomain AMES_1319 PF00089 Trypsin AMES_1320 PF03848 Tellurite resistance protein TehB AMES_1323 PF00067 Cytochrome P450 AMES_1324 PF01336 OB-fold nucleic acid binding domain AMES_1324 PF00152 tRNA synthetases class II (D, K and N) AMES_1328 PF00561 alpha/beta hydrolase fold AMES_1329 PF07995 Glucose / Sorbosone dehydrogenase AMES_1331 PF01906 Putative heavy-metal-binding AMES_1332 PF01906 Putative heavy-metal-binding AMES_1333 PF00294 pfkB family carbohydrate kinase AMES_1335 PF11975 Family 4 glycosyl hydrolase C-terminal domain AMES_1335 PF02056 Family 4 glycosyl hydrolase AMES_1336 PF00296 Luciferase-like monooxygenase AMES_1337 PF00890 FAD binding domain AMES_1338 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AMES_1338 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMES_1340 PF06441 Epoxide hydrolase N terminus AMES_1346 PF00809 Pterin binding enzyme AMES_1348 PF00005 ABC transporter AMES_1355 PF00652 Ricin-type beta-trefoil lectin domain AMES_1355 PF16483 Beta-1,3-glucanase AMES_1357 PF00892 EamA-like transporter family AMES_1358 PF01047 MarR family AMES_1360 PF03830 PTS system sorbose subfamily IIB component AMES_1361 PF03613 PTS system mannose/fructose/sorbose family IID component AMES_1362 PF03610 PTS system fructose IIA component AMES_1365 PF00486 Transcriptional regulatory protein, C terminal AMES_1365 PF00931 NB-ARC domain AMES_1365 PF03704 Bacterial transcriptional activator domain AMES_1367 PF07690 Major Facilitator Superfamily AMES_1368 PF09084 NMT1/THI5 like AMES_1369 PF00005 ABC transporter AMES_1369 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMES_1370 PF00005 ABC transporter AMES_1374 PF00440 Bacterial regulatory proteins, tetR family AMES_1378 PF00196 Bacterial regulatory proteins, luxR family AMES_1378 PF00072 Response regulator receiver domain AMES_1380 PF00005 ABC transporter AMES_1382 PF00457 Glycosyl hydrolases family 11 AMES_1383 PF01522 Polysaccharide deacetylase AMES_1383 PF00457 Glycosyl hydrolases family 11 AMES_1384 PF00005 ABC transporter AMES_1390 PF07690 Major Facilitator Superfamily AMES_1392 PF00171 Aldehyde dehydrogenase family AMES_1394 PF00723 Glycosyl hydrolases family 15 AMES_1395 PF00107 Zinc-binding dehydrogenase AMES_1395 PF08240 Alcohol dehydrogenase GroES-like domain AMES_1399 PF00296 Luciferase-like monooxygenase AMES_1402 PF17964 Bacterial Ig domain AMES_1402 PF03734 L,D-transpeptidase catalytic domain AMES_1403 PF07690 Major Facilitator Superfamily AMES_1404 PF01433 Peptidase family M1 domain AMES_1404 PF11838 ERAP1-like C-terminal domain AMES_1409 PF05593 RHS Repeat AMES_1409 PF03527 RHS protein AMES_1416 PF02801 Beta-ketoacyl synthase, C-terminal domain AMES_1416 PF14765 Polyketide synthase dehydratase AMES_1416 PF00550 Phosphopantetheine attachment site AMES_1416 PF16197 Ketoacyl-synthetase C-terminal extension AMES_1416 PF08659 KR domain AMES_1416 PF00107 Zinc-binding dehydrogenase AMES_1416 PF00698 Acyl transferase domain AMES_1416 PF00109 Beta-ketoacyl synthase, N-terminal domain AMES_1416 PF08240 Alcohol dehydrogenase GroES-like domain AMES_1422 PF03259 Roadblock/LC7 domain AMES_1425 PF00067 Cytochrome P450 AMES_1428 PF03466 LysR substrate binding domain AMES_1428 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMES_1430 PF01494 FAD binding domain AMES_1432 PF16859 Tetracyclin repressor-like, C-terminal domain AMES_1432 PF00440 Bacterial regulatory proteins, tetR family AMES_1438 PF00248 Aldo/keto reductase family AMES_1440 PF08281 Sigma-70, region 4 AMES_1440 PF04542 Sigma-70 region 2 AMES_1444 PF00931 NB-ARC domain AMES_1444 PF03704 Bacterial transcriptional activator domain AMES_1444 PF00486 Transcriptional regulatory protein, C terminal AMES_1446 PF03055 Retinal pigment epithelial membrane protein AMES_1452 PF00682 HMGL-like AMES_1453 PF13193 AMP-binding enzyme C-terminal domain AMES_1453 PF00501 AMP-binding enzyme AMES_1454 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AMES_1454 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMES_1456 PF00072 Response regulator receiver domain AMES_1456 PF00196 Bacterial regulatory proteins, luxR family AMES_1461 PF12706 Beta-lactamase superfamily domain AMES_1461 PF00753 Metallo-beta-lactamase superfamily AMES_1462 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMES_1463 PF00512 His Kinase A (phospho-acceptor) domain AMES_1463 PF00989 PAS fold AMES_1463 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_1464 PF00135 Carboxylesterase family AMES_1471 PF02423 Ornithine cyclodeaminase/mu-crystallin family AMES_1474 PF00174 Oxidoreductase molybdopterin binding domain AMES_1475 PF00175 Oxidoreductase NAD-binding domain AMES_1475 PF00111 2Fe-2S iron-sulfur cluster binding domain AMES_1475 PF00970 Oxidoreductase FAD-binding domain AMES_1480 PF00350 Dynamin family AMES_1482 PF00350 Dynamin family AMES_1483 PF01638 HxlR-like helix-turn-helix AMES_1484 PF13193 AMP-binding enzyme C-terminal domain AMES_1484 PF00501 AMP-binding enzyme AMES_1487 PF01243 Pyridoxamine 5'-phosphate oxidase AMES_1488 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMES_1488 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMES_1489 PF01270 Glycosyl hydrolases family 8 AMES_1490 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMES_1491 PF00528 Binding-protein-dependent transport system inner membrane component AMES_1492 PF00005 ABC transporter AMES_1493 PF08348 YheO-like PAS domain AMES_1493 PF13309 HTH domain AMES_1495 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase AMES_1496 PF00561 alpha/beta hydrolase fold AMES_1497 PF00005 ABC transporter AMES_1501 PF11799 impB/mucB/samB family C-terminal domain AMES_1501 PF00817 impB/mucB/samB family AMES_1501 PF11798 IMS family HHH motif AMES_1503 PF00392 Bacterial regulatory proteins, gntR family AMES_1503 PF07729 FCD domain AMES_1504 PF02653 Branched-chain amino acid transport system / permease component AMES_1505 PF00005 ABC transporter AMES_1506 PF13407 Periplasmic binding protein domain AMES_1513 PF13407 Periplasmic binding protein domain AMES_1515 PF07470 Glycosyl Hydrolase Family 88 AMES_1517 PF00486 Transcriptional regulatory protein, C terminal AMES_1517 PF00931 NB-ARC domain AMES_1517 PF03704 Bacterial transcriptional activator domain AMES_1519 PF09423 PhoD-like phosphatase AMES_1519 PF16655 PhoD-like phosphatase, N-terminal domain AMES_1520 PF12708 Pectate lyase superfamily protein AMES_1520 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) AMES_1520 PF13229 Right handed beta helix region AMES_1521 PF07470 Glycosyl Hydrolase Family 88 AMES_1523 PF01204 Trehalase AMES_1524 PF00480 ROK family AMES_1526 PF07730 Histidine kinase AMES_1526 PF17200 Single Cache domain 2 AMES_1528 PF00106 short chain dehydrogenase AMES_1529 PF02547 Queuosine biosynthesis protein AMES_1532 PF00005 ABC transporter AMES_1533 PF00528 Binding-protein-dependent transport system inner membrane component AMES_1536 PF00270 DEAD/DEAH box helicase AMES_1536 PF00271 Helicase conserved C-terminal domain AMES_1541 PF16921 Tex protein YqgF-like domain AMES_1541 PF09371 Tex-like protein N-terminal domain AMES_1541 PF17674 HHH domain AMES_1541 PF00575 S1 RNA binding domain AMES_1542 PF00704 Glycosyl hydrolases family 18 AMES_1542 PF00041 Fibronectin type III domain AMES_1542 PF02018 Carbohydrate binding domain AMES_1543 PF05199 GMC oxidoreductase AMES_1544 PF00743 Flavin-binding monooxygenase-like AMES_1547 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AMES_1547 PF12833 Helix-turn-helix domain AMES_1550 PF00440 Bacterial regulatory proteins, tetR family AMES_1550 PF18665 Tetracyclin repressor-like, C-terminal domain AMES_1553 PF01575 MaoC like domain AMES_1553 PF00171 Aldehyde dehydrogenase family AMES_1554 PF05138 Phenylacetic acid catabolic protein AMES_1555 PF06243 Phenylacetic acid degradation B AMES_1556 PF05138 Phenylacetic acid catabolic protein AMES_1557 PF01883 Iron-sulfur cluster assembly protein AMES_1559 PF00175 Oxidoreductase NAD-binding domain AMES_1559 PF00111 2Fe-2S iron-sulfur cluster binding domain AMES_1559 PF00970 Oxidoreductase FAD-binding domain AMES_1561 PF16701 Adenylate cyclase regulatory domain AMES_1561 PF00211 Adenylate and Guanylate cyclase catalytic domain AMES_1562 PF00582 Universal stress protein family AMES_1568 PF02803 Thiolase, C-terminal domain AMES_1568 PF00108 Thiolase, N-terminal domain AMES_1570 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMES_1571 PF00155 Aminotransferase class I and II AMES_1571 PF00392 Bacterial regulatory proteins, gntR family AMES_1572 PF02627 Carboxymuconolactone decarboxylase family AMES_1574 PF00474 Sodium:solute symporter family AMES_1576 PF00474 Sodium:solute symporter family AMES_1578 PF00072 Response regulator receiver domain AMES_1578 PF04397 LytTr DNA-binding domain AMES_1579 PF06580 Histidine kinase AMES_1579 PF07694 5TMR of 5TMR-LYT AMES_1581 PF13407 Periplasmic binding protein domain AMES_1582 PF02653 Branched-chain amino acid transport system / permease component AMES_1583 PF00005 ABC transporter AMES_1585 PF00356 Bacterial regulatory proteins, lacI family AMES_1586 PF17678 Glycosyl hydrolase family 92 N-terminal domain AMES_1586 PF07971 Glycosyl hydrolase family 92 AMES_1587 PF17678 Glycosyl hydrolase family 92 N-terminal domain AMES_1587 PF07971 Glycosyl hydrolase family 92 AMES_1589 PF01047 MarR family AMES_1590 PF01910 Thiamine-binding protein AMES_1592 PF00085 Thioredoxin AMES_1594 PF11897 Protein of unknown function (DUF3417) AMES_1594 PF00343 Carbohydrate phosphorylase AMES_1599 PF00296 Luciferase-like monooxygenase AMES_1602 PF00005 ABC transporter AMES_1603 PF00378 Enoyl-CoA hydratase/isomerase AMES_1604 PF01209 ubiE/COQ5 methyltransferase family AMES_1605 PF18096 THUMP domain-like AMES_1607 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMES_1607 PF03466 LysR substrate binding domain AMES_1608 PF02839 Carbohydrate binding domain AMES_1610 PF00155 Aminotransferase class I and II AMES_1610 PF00392 Bacterial regulatory proteins, gntR family AMES_1612 PF01494 FAD binding domain AMES_1617 PF01494 FAD binding domain AMES_1618 PF00248 Aldo/keto reductase family AMES_1619 PF00877 NlpC/P60 family AMES_1620 PF01156 Inosine-uridine preferring nucleoside hydrolase AMES_1621 PF00132 Bacterial transferase hexapeptide (six repeats) AMES_1623 PF00291 Pyridoxal-phosphate dependent enzyme AMES_1623 PF00585 C-terminal regulatory domain of Threonine dehydratase AMES_1626 PF06114 IrrE N-terminal-like domain AMES_1626 PF01381 Helix-turn-helix AMES_1626 PF09856 Predicted transcriptional regulator (DUF2083) AMES_1627 PF00463 Isocitrate lyase family AMES_1634 PF13439 Glycosyltransferase Family 4 AMES_1634 PF00534 Glycosyl transferases group 1 AMES_1635 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMES_1635 PF00703 Glycosyl hydrolases family 2 AMES_1635 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMES_1636 PF00255 Glutathione peroxidase AMES_1637 PF03065 Glycosyl hydrolase family 57 AMES_1637 PF09210 Domain of unknown function (DUF1957) AMES_1638 PF08241 Methyltransferase domain AMES_1639 PF02645 Uncharacterised protein, DegV family COG1307 AMES_1641 PF01012 Electron transfer flavoprotein domain AMES_1642 PF01012 Electron transfer flavoprotein domain AMES_1642 PF00766 Electron transfer flavoprotein FAD-binding domain AMES_1646 PF00072 Response regulator receiver domain AMES_1646 PF00196 Bacterial regulatory proteins, luxR family AMES_1647 PF07690 Major Facilitator Superfamily AMES_1648 PF00266 Aminotransferase class-V AMES_1653 PF00753 Metallo-beta-lactamase superfamily AMES_1657 PF12826 Helix-hairpin-helix motif AMES_1657 PF03120 NAD-dependent DNA ligase OB-fold domain AMES_1657 PF00533 BRCA1 C Terminus (BRCT) domain AMES_1657 PF01653 NAD-dependent DNA ligase adenylation domain AMES_1657 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AMES_1660 PF02686 Glu-tRNAGln amidotransferase C subunit AMES_1661 PF01425 Amidase AMES_1662 PF02934 GatB/GatE catalytic domain AMES_1662 PF02637 GatB domain AMES_1667 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMES_1667 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMES_1669 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMES_1669 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMES_1671 PF00920 Dehydratase family AMES_1673 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMES_1673 PF00205 Thiamine pyrophosphate enzyme, central domain AMES_1673 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMES_1674 PF10369 Small subunit of acetolactate synthase AMES_1675 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AMES_1675 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AMES_1681 PF00440 Bacterial regulatory proteins, tetR family AMES_1682 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMES_1682 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMES_1682 PF01842 ACT domain AMES_1683 PF13860 FlgD Ig-like domain AMES_1683 PF05922 Peptidase inhibitor I9 AMES_1683 PF02225 PA domain AMES_1683 PF00082 Subtilase family AMES_1684 PF00180 Isocitrate/isopropylmalate dehydrogenase AMES_1685 PF00682 HMGL-like AMES_1685 PF08502 LeuA allosteric (dimerisation) domain AMES_1686 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMES_1687 PF01494 FAD binding domain AMES_1689 PF00216 Bacterial DNA-binding protein AMES_1690 PF03704 Bacterial transcriptional activator domain AMES_1690 PF00931 NB-ARC domain AMES_1690 PF00486 Transcriptional regulatory protein, C terminal AMES_1698 PF11774 Lsr2 AMES_1700 PF00216 Bacterial DNA-binding protein AMES_1702 PF00149 Calcineurin-like phosphoesterase AMES_1702 PF12320 Type 5 capsule protein repressor C-terminal domain AMES_1703 PF13476 AAA domain AMES_1709 PF09339 IclR helix-turn-helix domain AMES_1709 PF01614 Bacterial transcriptional regulator AMES_1710 PF00330 Aconitase family (aconitate hydratase) AMES_1711 PF00694 Aconitase C-terminal domain AMES_1712 PF00216 Bacterial DNA-binding protein AMES_1713 PF03704 Bacterial transcriptional activator domain AMES_1713 PF00931 NB-ARC domain AMES_1713 PF00486 Transcriptional regulatory protein, C terminal AMES_1714 PF00300 Histidine phosphatase superfamily (branch 1) AMES_1714 PF00293 NUDIX domain AMES_1715 PF13089 Polyphosphate kinase N-terminal domain AMES_1715 PF17941 Polyphosphate kinase C-terminal domain 1 AMES_1715 PF13090 Polyphosphate kinase C-terminal domain 2 AMES_1715 PF02503 Polyphosphate kinase middle domain AMES_1718 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AMES_1718 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AMES_1720 PF17763 Glutaminase/Asparaginase C-terminal domain AMES_1720 PF00710 Asparaginase, N-terminal AMES_1722 PF02424 ApbE family AMES_1724 PF00175 Oxidoreductase NAD-binding domain AMES_1724 PF00111 2Fe-2S iron-sulfur cluster binding domain AMES_1725 PF00072 Response regulator receiver domain AMES_1725 PF00486 Transcriptional regulatory protein, C terminal AMES_1727 PF00512 His Kinase A (phospho-acceptor) domain AMES_1727 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_1727 PF00672 HAMP domain AMES_1728 PF00392 Bacterial regulatory proteins, gntR family AMES_1730 PF01820 D-ala D-ala ligase N-terminus AMES_1730 PF07478 D-ala D-ala ligase C-terminus AMES_1732 PF02769 AIR synthase related protein, C-terminal domain AMES_1732 PF00586 AIR synthase related protein, N-terminal domain AMES_1733 PF16499 Alpha galactosidase A AMES_1733 PF17801 Alpha galactosidase C-terminal beta sandwich domain AMES_1735 PF00132 Bacterial transferase hexapeptide (six repeats) AMES_1736 PF03167 Uracil DNA glycosylase superfamily AMES_1738 PF00830 Ribosomal L28 family AMES_1739 PF02734 DAK2 domain AMES_1739 PF13684 Dihydroxyacetone kinase family AMES_1740 PF00270 DEAD/DEAH box helicase AMES_1740 PF17191 RecG wedge domain AMES_1740 PF00271 Helicase conserved C-terminal domain AMES_1743 PF00156 Phosphoribosyl transferase domain AMES_1743 PF05139 Erythromycin esterase AMES_1745 PF04151 Bacterial pre-peptidase C-terminal domain AMES_1745 PF05922 Peptidase inhibitor I9 AMES_1745 PF00082 Subtilase family AMES_1746 PF01609 Transposase DDE domain AMES_1746 PF13808 DDE_Tnp_1-associated AMES_1748 PF02785 Biotin carboxylase C-terminal domain AMES_1748 PF00682 HMGL-like AMES_1748 PF02436 Conserved carboxylase domain AMES_1748 PF00289 Biotin carboxylase, N-terminal domain AMES_1748 PF00364 Biotin-requiring enzyme AMES_1748 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMES_1749 PF00491 Arginase family AMES_1762 PF02470 MlaD protein AMES_1767 PF02405 Permease MlaE AMES_1769 PF00296 Luciferase-like monooxygenase AMES_1770 PF01494 FAD binding domain AMES_1772 PF10431 C-terminal, D2-small domain, of ClpB protein AMES_1772 PF17871 AAA lid domain AMES_1772 PF07724 AAA domain (Cdc48 subfamily) AMES_1772 PF00004 ATPase family associated with various cellular activities (AAA) AMES_1772 PF02861 Clp amino terminal domain, pathogenicity island component AMES_1773 PF12894 Anaphase-promoting complex subunit 4 WD40 domain AMES_1773 PF00400 WD domain, G-beta repeat AMES_1774 PF13538 UvrD-like helicase C-terminal domain AMES_1776 PF01467 Cytidylyltransferase-like AMES_1777 PF00545 ribonuclease AMES_1781 PF02620 Large ribosomal RNA subunit accumulation protein YceD AMES_1782 PF01783 Ribosomal L32p protein family AMES_1783 PF14622 Ribonuclease-III-like AMES_1783 PF00035 Double-stranded RNA binding motif AMES_1784 PF14592 Chondroitinase B AMES_1785 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AMES_1785 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMES_1785 PF06827 Zinc finger found in FPG and IleRS AMES_1789 PF08450 SMP-30/Gluconolactonase/LRE-like region AMES_1792 PF12697 Alpha/beta hydrolase family AMES_1794 PF00120 Glutamine synthetase, catalytic domain AMES_1795 PF07722 Peptidase C26 AMES_1796 PF00171 Aldehyde dehydrogenase family AMES_1800 PF02347 Glycine cleavage system P-protein AMES_1801 PF01571 Aminomethyltransferase folate-binding domain AMES_1801 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMES_1802 PF01597 Glycine cleavage H-protein AMES_1803 PF00464 Serine hydroxymethyltransferase AMES_1804 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AMES_1804 PF04055 Radical SAM superfamily AMES_1805 PF03313 Serine dehydratase alpha chain AMES_1805 PF03315 Serine dehydratase beta chain AMES_1806 PF04255 Protein of unknown function (DUF433) AMES_1808 PF07729 FCD domain AMES_1808 PF00392 Bacterial regulatory proteins, gntR family AMES_1809 PF00905 Penicillin binding protein transpeptidase domain AMES_1809 PF00912 Transglycosylase AMES_1810 PF01596 O-methyltransferase AMES_1811 PF00155 Aminotransferase class I and II AMES_1811 PF00392 Bacterial regulatory proteins, gntR family AMES_1813 PF01494 FAD binding domain AMES_1814 PF00106 short chain dehydrogenase AMES_1816 PF13411 MerR HTH family regulatory protein AMES_1816 PF07739 TipAS antibiotic-recognition domain AMES_1817 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMES_1817 PF14759 Reductase C-terminal AMES_1818 PF07690 Major Facilitator Superfamily AMES_1820 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMES_1821 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMES_1821 PF13378 Enolase C-terminal domain-like AMES_1824 PF00005 ABC transporter AMES_1825 PF02653 Branched-chain amino acid transport system / permease component AMES_1826 PF00392 Bacterial regulatory proteins, gntR family AMES_1826 PF07729 FCD domain AMES_1827 PF00248 Aldo/keto reductase family AMES_1829 PF04542 Sigma-70 region 2 AMES_1829 PF08281 Sigma-70, region 4 AMES_1831 PF02656 Domain of unknown function (DUF202) AMES_1835 PF02595 Glycerate kinase family AMES_1836 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMES_1836 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMES_1837 PF16874 Glycosyl hydrolase family 36 C-terminal domain AMES_1837 PF16875 Glycosyl hydrolase family 36 N-terminal domain AMES_1838 PF00480 ROK family AMES_1839 PF01547 Bacterial extracellular solute-binding protein AMES_1840 PF00528 Binding-protein-dependent transport system inner membrane component AMES_1841 PF00528 Binding-protein-dependent transport system inner membrane component AMES_1842 PF17801 Alpha galactosidase C-terminal beta sandwich domain AMES_1842 PF16499 Alpha galactosidase A AMES_1843 PF01144 Coenzyme A transferase AMES_1844 PF01144 Coenzyme A transferase AMES_1845 PF02803 Thiolase, C-terminal domain AMES_1845 PF00108 Thiolase, N-terminal domain AMES_1846 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal AMES_1846 PF00775 Dioxygenase AMES_1847 PF00775 Dioxygenase AMES_1848 PF12146 Serine aminopeptidase, S33 AMES_1849 PF02627 Carboxymuconolactone decarboxylase family AMES_1850 PF09339 IclR helix-turn-helix domain AMES_1850 PF01614 Bacterial transcriptional regulator AMES_1851 PF12804 MobA-like NTP transferase domain AMES_1852 PF00004 ATPase family associated with various cellular activities (AAA) AMES_1852 PF02190 ATP-dependent protease La (LON) substrate-binding domain AMES_1852 PF05362 Lon protease (S16) C-terminal proteolytic domain AMES_1856 PF01799 [2Fe-2S] binding domain AMES_1856 PF00111 2Fe-2S iron-sulfur cluster binding domain AMES_1857 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMES_1857 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMES_1858 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMES_1858 PF00941 FAD binding domain in molybdopterin dehydrogenase AMES_1860 PF08448 PAS fold AMES_1860 PF00990 Diguanylate cyclase, GGDEF domain AMES_1861 PF00743 Flavin-binding monooxygenase-like AMES_1862 PF00248 Aldo/keto reductase family AMES_1864 PF00149 Calcineurin-like phosphoesterase AMES_1866 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMES_1866 PF00205 Thiamine pyrophosphate enzyme, central domain AMES_1866 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMES_1868 PF04962 KduI/IolB family AMES_1870 PF00294 pfkB family carbohydrate kinase AMES_1871 PF00005 ABC transporter AMES_1872 PF02653 Branched-chain amino acid transport system / permease component AMES_1874 PF01261 Xylose isomerase-like TIM barrel AMES_1875 PF00356 Bacterial regulatory proteins, lacI family AMES_1876 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMES_1876 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMES_1877 PF13537 Glutamine amidotransferase domain AMES_1877 PF00733 Asparagine synthase AMES_1878 PF03814 Potassium-transporting ATPase A subunit AMES_1880 PF02669 K+-transporting ATPase, c chain AMES_1881 PF13493 Domain of unknown function (DUF4118) AMES_1881 PF00582 Universal stress protein family AMES_1881 PF00512 His Kinase A (phospho-acceptor) domain AMES_1881 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_1881 PF02702 Osmosensitive K+ channel His kinase sensor domain AMES_1882 PF00072 Response regulator receiver domain AMES_1882 PF00486 Transcriptional regulatory protein, C terminal AMES_1887 PF00708 Acylphosphatase AMES_1888 PF02463 RecF/RecN/SMC N terminal domain AMES_1888 PF06470 SMC proteins Flexible Hinge Domain AMES_1890 PF00474 Sodium:solute symporter family AMES_1891 PF03702 Anhydro-N-acetylmuramic acid kinase AMES_1893 PF00448 SRP54-type protein, GTPase domain AMES_1893 PF02881 SRP54-type protein, helical bundle domain AMES_1895 PF01614 Bacterial transcriptional regulator AMES_1895 PF09339 IclR helix-turn-helix domain AMES_1902 PF00375 Sodium:dicarboxylate symporter family AMES_1903 PF05651 Putative sugar diacid recognition AMES_1903 PF17853 GGDEF-like domain AMES_1903 PF13556 PucR C-terminal helix-turn-helix domain AMES_1904 PF00941 FAD binding domain in molybdopterin dehydrogenase AMES_1904 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMES_1905 PF00111 2Fe-2S iron-sulfur cluster binding domain AMES_1905 PF01799 [2Fe-2S] binding domain AMES_1906 PF01979 Amidohydrolase family AMES_1907 PF16499 Alpha galactosidase A AMES_1907 PF17801 Alpha galactosidase C-terminal beta sandwich domain AMES_1908 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMES_1908 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMES_1909 PF00440 Bacterial regulatory proteins, tetR family AMES_1910 PF01014 Uricase AMES_1912 PF00576 HIUase/Transthyretin family AMES_1915 PF01979 Amidohydrolase family AMES_1916 PF03561 Allantoicase repeat AMES_1917 PF13380 CoA binding domain AMES_1918 PF01053 Cys/Met metabolism PLP-dependent enzyme AMES_1923 PF12680 SnoaL-like domain AMES_1923 PF04542 Sigma-70 region 2 AMES_1923 PF08281 Sigma-70, region 4 AMES_1925 PF00909 Ammonium Transporter Family AMES_1926 PF00543 Nitrogen regulatory protein P-II AMES_1927 PF08335 GlnD PII-uridylyltransferase AMES_1927 PF01966 HD domain AMES_1928 PF01494 FAD binding domain AMES_1931 PF08448 PAS fold AMES_1931 PF00990 Diguanylate cyclase, GGDEF domain AMES_1933 PF00440 Bacterial regulatory proteins, tetR family AMES_1935 PF02735 Ku70/Ku80 beta-barrel domain AMES_1937 PF00005 ABC transporter AMES_1937 PF00664 ABC transporter transmembrane region AMES_1938 PF02978 Signal peptide binding domain AMES_1938 PF00448 SRP54-type protein, GTPase domain AMES_1938 PF02881 SRP54-type protein, helical bundle domain AMES_1939 PF01979 Amidohydrolase family AMES_1942 PF00886 Ribosomal protein S16 AMES_1944 PF01782 RimM N-terminal domain AMES_1944 PF05239 PRC-barrel domain AMES_1946 PF01746 tRNA (Guanine-1)-methyltransferase AMES_1947 PF01245 Ribosomal protein L19 AMES_1948 PF10502 Signal peptidase, peptidase S26 AMES_1949 PF01351 Ribonuclease HII AMES_1950 PF10611 Protein of unknown function (DUF2469) AMES_1951 PF02021 Uncharacterised protein family UPF0102 AMES_1952 PF13335 Magnesium chelatase, subunit ChlI C-terminal AMES_1952 PF01078 Magnesium chelatase, subunit ChlI AMES_1954 PF17782 DprA winged helix domain AMES_1954 PF02481 DNA recombination-mediator protein A AMES_1955 PF02899 Phage integrase, N-terminal SAM-like domain AMES_1955 PF00589 Phage integrase family AMES_1956 PF04545 Sigma-70, region 4 AMES_1956 PF04542 Sigma-70 region 2 AMES_1956 PF04539 Sigma-70 region 3 AMES_1957 PF01551 Peptidase family M23 AMES_1958 PF00318 Ribosomal protein S2 AMES_1959 PF00889 Elongation factor TS AMES_1960 PF00696 Amino acid kinase family AMES_1961 PF01765 Ribosome recycling factor AMES_1964 PF03551 Transcriptional regulator PadR-like family AMES_1965 PF13847 Methyltransferase domain AMES_1965 PF03551 Transcriptional regulator PadR-like family AMES_1966 PF01032 FecCD transport family AMES_1967 PF01032 FecCD transport family AMES_1968 PF00005 ABC transporter AMES_1969 PF01497 Periplasmic binding protein AMES_1971 PF00456 Transketolase, thiamine diphosphate binding domain AMES_1971 PF02780 Transketolase, C-terminal domain AMES_1971 PF02779 Transketolase, pyrimidine binding domain AMES_1972 PF04055 Radical SAM superfamily AMES_1974 PF05593 RHS Repeat AMES_1977 PF02633 Creatinine amidohydrolase AMES_1978 PF01565 FAD binding domain AMES_1978 PF02913 FAD linked oxidases, C-terminal domain AMES_1981 PF00005 ABC transporter AMES_1982 PF07969 Amidohydrolase family AMES_1985 PF01979 Amidohydrolase family AMES_1991 PF00384 Molybdopterin oxidoreductase AMES_1991 PF01568 Molydopterin dinucleotide binding domain AMES_1993 PF13411 MerR HTH family regulatory protein AMES_1995 PF07690 Major Facilitator Superfamily AMES_1997 PF03795 YCII-related domain AMES_1998 PF05368 NmrA-like family AMES_1999 PF00550 Phosphopantetheine attachment site AMES_1999 PF08240 Alcohol dehydrogenase GroES-like domain AMES_1999 PF16197 Ketoacyl-synthetase C-terminal extension AMES_1999 PF14765 Polyketide synthase dehydratase AMES_1999 PF08659 KR domain AMES_1999 PF00698 Acyl transferase domain AMES_1999 PF00109 Beta-ketoacyl synthase, N-terminal domain AMES_1999 PF02801 Beta-ketoacyl synthase, C-terminal domain AMES_1999 PF08990 Erythronolide synthase docking AMES_2001 PF01381 Helix-turn-helix AMES_2003 PF03795 YCII-related domain AMES_2004 PF08281 Sigma-70, region 4 AMES_2004 PF04542 Sigma-70 region 2 AMES_2005 PF00378 Enoyl-CoA hydratase/isomerase AMES_2007 PF00291 Pyridoxal-phosphate dependent enzyme AMES_2008 PF03960 ArsC family AMES_2012 PF00067 Cytochrome P450 AMES_2014 PF03704 Bacterial transcriptional activator domain AMES_2014 PF00931 NB-ARC domain AMES_2014 PF00486 Transcriptional regulatory protein, C terminal AMES_2015 PF13847 Methyltransferase domain AMES_2016 PF00155 Aminotransferase class I and II AMES_2016 PF00392 Bacterial regulatory proteins, gntR family AMES_2018 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMES_2020 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AMES_2020 PF13288 DXP reductoisomerase C-terminal domain AMES_2020 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AMES_2021 PF02163 Peptidase family M50 AMES_2021 PF17820 PDZ domain AMES_2022 PF04551 GcpE protein AMES_2028 PF00583 Acetyltransferase (GNAT) family AMES_2029 PF00905 Penicillin binding protein transpeptidase domain AMES_2030 PF00557 Metallopeptidase family M24 AMES_2031 PF01061 ABC-2 type transporter AMES_2032 PF00005 ABC transporter AMES_2032 PF13732 Domain of unknown function (DUF4162) AMES_2035 PF00392 Bacterial regulatory proteins, gntR family AMES_2035 PF07729 FCD domain AMES_2037 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMES_2037 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMES_2039 PF00089 Trypsin AMES_2040 PF13673 Acetyltransferase (GNAT) domain AMES_2041 PF00155 Aminotransferase class I and II AMES_2042 PF00270 DEAD/DEAH box helicase AMES_2042 PF00271 Helicase conserved C-terminal domain AMES_2049 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMES_2049 PF03466 LysR substrate binding domain AMES_2051 PF03883 Peroxide stress protein YaaA AMES_2052 PF01266 FAD dependent oxidoreductase AMES_2055 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMES_2057 PF09594 Glycosyltransferase family 87 AMES_2059 PF04073 Aminoacyl-tRNA editing domain AMES_2059 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMES_2059 PF03129 Anticodon binding domain AMES_2061 PF09924 Uncharacterised conserved protein (DUF2156) AMES_2067 PF00196 Bacterial regulatory proteins, luxR family AMES_2067 PF00072 Response regulator receiver domain AMES_2070 PF00487 Fatty acid desaturase AMES_2071 PF00175 Oxidoreductase NAD-binding domain AMES_2071 PF00042 Globin AMES_2071 PF00970 Oxidoreductase FAD-binding domain AMES_2072 PF00440 Bacterial regulatory proteins, tetR family AMES_2073 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AMES_2073 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AMES_2074 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AMES_2075 PF02233 NAD(P) transhydrogenase beta subunit AMES_2078 PF00403 Heavy-metal-associated domain AMES_2078 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMES_2078 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMES_2082 PF00109 Beta-ketoacyl synthase, N-terminal domain AMES_2082 PF02801 Beta-ketoacyl synthase, C-terminal domain AMES_2083 PF00550 Phosphopantetheine attachment site AMES_2084 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMES_2084 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMES_2085 PF00698 Acyl transferase domain AMES_2087 PF13556 PucR C-terminal helix-turn-helix domain AMES_2087 PF17853 GGDEF-like domain AMES_2088 PF00005 ABC transporter AMES_2088 PF13732 Domain of unknown function (DUF4162) AMES_2091 PF02652 L-lactate permease AMES_2092 PF04973 Nicotinamide mononucleotide transporter AMES_2094 PF01070 FMN-dependent dehydrogenase AMES_2096 PF17831 Pyruvate dehydrogenase E1 component middle domain AMES_2096 PF00456 Transketolase, thiamine diphosphate binding domain AMES_2097 PF11253 Protein of unknown function (DUF3052) AMES_2098 PF00578 AhpC/TSA family AMES_2099 PF02796 Helix-turn-helix domain of resolvase AMES_2099 PF00239 Resolvase, N terminal domain AMES_2101 PF01555 DNA methylase AMES_2114 PF12697 Alpha/beta hydrolase family AMES_2115 PF00899 ThiF family AMES_2120 PF07690 Major Facilitator Superfamily AMES_2124 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_2124 PF02770 Acyl-CoA dehydrogenase, middle domain AMES_2124 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_2125 PF00266 Aminotransferase class-V AMES_2126 PF00106 short chain dehydrogenase AMES_2127 PF00392 Bacterial regulatory proteins, gntR family AMES_2127 PF07729 FCD domain AMES_2129 PF00149 Calcineurin-like phosphoesterase AMES_2130 PF10415 Fumarase C C-terminus AMES_2130 PF00206 Lyase AMES_2132 PF00324 Amino acid permease AMES_2133 PF00392 Bacterial regulatory proteins, gntR family AMES_2133 PF07729 FCD domain AMES_2134 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AMES_2134 PF07733 Bacterial DNA polymerase III alpha NTPase domain AMES_2134 PF14579 Helix-hairpin-helix motif AMES_2134 PF01336 OB-fold nucleic acid binding domain AMES_2134 PF02811 PHP domain AMES_2135 PF07690 Major Facilitator Superfamily AMES_2137 PF17964 Bacterial Ig domain AMES_2137 PF03734 L,D-transpeptidase catalytic domain AMES_2139 PF09335 SNARE associated Golgi protein AMES_2140 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AMES_2140 PF04055 Radical SAM superfamily AMES_2141 PF00106 short chain dehydrogenase AMES_2143 PF00440 Bacterial regulatory proteins, tetR family AMES_2145 PF03099 Biotin/lipoate A/B protein ligase family AMES_2147 PF01370 NAD dependent epimerase/dehydratase family AMES_2147 PF08338 Domain of unknown function (DUF1731) AMES_2148 PF02817 e3 binding domain AMES_2148 PF00364 Biotin-requiring enzyme AMES_2148 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMES_2149 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMES_2149 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMES_2155 PF02789 Cytosol aminopeptidase family, N-terminal domain AMES_2155 PF00883 Cytosol aminopeptidase family, catalytic domain AMES_2159 PF01063 Amino-transferase class IV AMES_2160 PF02277 Phosphoribosyltransferase AMES_2162 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AMES_2162 PF02542 YgbB family AMES_2164 PF01259 SAICAR synthetase AMES_2165 PF00248 Aldo/keto reductase family AMES_2167 PF11241 Protein of unknown function (DUF3043) AMES_2168 PF01521 Iron-sulphur cluster biosynthesis AMES_2169 PF00294 pfkB family carbohydrate kinase AMES_2170 PF00733 Asparagine synthase AMES_2170 PF13537 Glutamine amidotransferase domain AMES_2171 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AMES_2172 PF12270 Cytochrome c oxidase subunit IV AMES_2173 PF01965 DJ-1/PfpI family AMES_2173 PF12833 Helix-turn-helix domain AMES_2174 PF00591 Glycosyl transferase family, a/b domain AMES_2174 PF02885 Glycosyl transferase family, helical bundle domain AMES_2178 PF00510 Cytochrome c oxidase subunit III AMES_2179 PF00034 Cytochrome c AMES_2179 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMES_2180 PF00355 Rieske [2Fe-2S] domain AMES_2181 PF13631 Cytochrome b(N-terminal)/b6/petB AMES_2183 PF00929 Exonuclease AMES_2183 PF01541 GIY-YIG catalytic domain AMES_2186 PF00877 NlpC/P60 family AMES_2188 PF13439 Glycosyltransferase Family 4 AMES_2188 PF00534 Glycosyl transferases group 1 AMES_2190 PF00067 Cytochrome P450 AMES_2191 PF00202 Aminotransferase class-III AMES_2192 PF00916 Sulfate permease family AMES_2192 PF01740 STAS domain AMES_2193 PF00916 Sulfate permease family AMES_2193 PF01740 STAS domain AMES_2195 PF04055 Radical SAM superfamily AMES_2195 PF06968 Biotin and Thiamin Synthesis associated domain AMES_2197 PF01435 Peptidase family M48 AMES_2198 PF00004 ATPase family associated with various cellular activities (AAA) AMES_2198 PF05362 Lon protease (S16) C-terminal proteolytic domain AMES_2198 PF02190 ATP-dependent protease La (LON) substrate-binding domain AMES_2200 PF02445 Quinolinate synthetase A protein AMES_2201 PF02910 Fumarate reductase flavoprotein C-term AMES_2201 PF00890 FAD binding domain AMES_2202 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AMES_2202 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AMES_2203 PF00082 Subtilase family AMES_2211 PF00501 AMP-binding enzyme AMES_2211 PF13193 AMP-binding enzyme C-terminal domain AMES_2214 PF01580 FtsK/SpoIIIE family AMES_2219 PF02575 YbaB/EbfC DNA-binding family AMES_2221 PF17189 Glycosyl hydrolase family 30 beta sandwich domain AMES_2223 PF05108 Type VII secretion system ESX-1, transport TM domain B AMES_2224 PF00196 Bacterial regulatory proteins, luxR family AMES_2224 PF00072 Response regulator receiver domain AMES_2225 PF00072 Response regulator receiver domain AMES_2225 PF00196 Bacterial regulatory proteins, luxR family AMES_2226 PF00795 Carbon-nitrogen hydrolase AMES_2227 PF00815 Histidinol dehydrogenase AMES_2228 PF00155 Aminotransferase class I and II AMES_2229 PF12706 Beta-lactamase superfamily domain AMES_2230 PF00475 Imidazoleglycerol-phosphate dehydratase AMES_2232 PF00561 alpha/beta hydrolase fold AMES_2233 PF03176 MMPL family AMES_2234 PF00440 Bacterial regulatory proteins, tetR family AMES_2234 PF08361 MAATS-type transcriptional repressor, C-terminal region AMES_2235 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family AMES_2236 PF00376 MerR family regulatory protein AMES_2236 PF09278 MerR, DNA binding AMES_2237 PF00456 Transketolase, thiamine diphosphate binding domain AMES_2238 PF02779 Transketolase, pyrimidine binding domain AMES_2240 PF00293 NUDIX domain AMES_2241 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_2241 PF02770 Acyl-CoA dehydrogenase, middle domain AMES_2241 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_2243 PF00117 Glutamine amidotransferase class-I AMES_2245 PF00977 Histidine biosynthesis protein AMES_2254 PF04542 Sigma-70 region 2 AMES_2254 PF04539 Sigma-70 region 3 AMES_2254 PF04545 Sigma-70, region 4 AMES_2255 PF02333 Phytase AMES_2256 PF00977 Histidine biosynthesis protein AMES_2258 PF01502 Phosphoribosyl-AMP cyclohydrolase AMES_2265 PF04715 Anthranilate synthase component I, N terminal region AMES_2265 PF00425 chorismate binding enzyme AMES_2267 PF00218 Indole-3-glycerol phosphate synthase AMES_2268 PF00291 Pyridoxal-phosphate dependent enzyme AMES_2269 PF00290 Tryptophan synthase alpha chain AMES_2270 PF13411 MerR HTH family regulatory protein AMES_2274 PF03951 Glutamine synthetase, beta-Grasp domain AMES_2274 PF00120 Glutamine synthetase, catalytic domain AMES_2277 PF07687 Peptidase dimerisation domain AMES_2277 PF01546 Peptidase family M20/M25/M40 AMES_2278 PF01790 Prolipoprotein diacylglyceryl transferase AMES_2280 PF04898 Glutamate synthase central domain AMES_2280 PF00310 Glutamine amidotransferases class-II AMES_2280 PF01645 Conserved region in glutamate synthase AMES_2280 PF01493 GXGXG motif AMES_2281 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMES_2281 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AMES_2284 PF00561 alpha/beta hydrolase fold AMES_2285 PF01474 Class-II DAHP synthetase family AMES_2288 PF06974 Protein of unknown function (DUF1298) AMES_2288 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain AMES_2290 PF01145 SPFH domain / Band 7 family AMES_2290 PF15975 Flotillin AMES_2292 PF03793 PASTA domain AMES_2292 PF00069 Protein kinase domain AMES_2295 PF00296 Luciferase-like monooxygenase AMES_2297 PF01593 Flavin containing amine oxidoreductase AMES_2300 PF02219 Methylenetetrahydrofolate reductase AMES_2309 PF01327 Polypeptide deformylase AMES_2310 PF08494 DEAD/H associated AMES_2310 PF00270 DEAD/DEAH box helicase AMES_2310 PF00271 Helicase conserved C-terminal domain AMES_2311 PF08220 DeoR-like helix-turn-helix domain AMES_2311 PF00455 DeoR C terminal sensor domain AMES_2312 PF07690 Major Facilitator Superfamily AMES_2313 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AMES_2317 PF00154 recA bacterial DNA recombination protein AMES_2318 PF02631 RecX family AMES_2322 PF01081 KDPG and KHG aldolase AMES_2323 PF00920 Dehydratase family AMES_2326 PF02910 Fumarate reductase flavoprotein C-term AMES_2326 PF00890 FAD binding domain AMES_2327 PF13085 2Fe-2S iron-sulfur cluster binding domain AMES_2327 PF13183 4Fe-4S dicluster domain AMES_2333 PF00528 Binding-protein-dependent transport system inner membrane component AMES_2334 PF00528 Binding-protein-dependent transport system inner membrane component AMES_2335 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMES_2336 PF00005 ABC transporter AMES_2337 PF00486 Transcriptional regulatory protein, C terminal AMES_2337 PF00072 Response regulator receiver domain AMES_2339 PF00512 His Kinase A (phospho-acceptor) domain AMES_2339 PF00672 HAMP domain AMES_2339 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_2340 PF01638 HxlR-like helix-turn-helix AMES_2345 PF03372 Endonuclease/Exonuclease/phosphatase family AMES_2350 PF01494 FAD binding domain AMES_2351 PF00440 Bacterial regulatory proteins, tetR family AMES_2351 PF02909 Tetracyclin repressor-like, C-terminal domain AMES_2352 PF01494 FAD binding domain AMES_2353 PF00919 Uncharacterized protein family UPF0004 AMES_2353 PF04055 Radical SAM superfamily AMES_2354 PF00919 Uncharacterized protein family UPF0004 AMES_2354 PF04055 Radical SAM superfamily AMES_2356 PF03993 Domain of Unknown Function (DUF349) AMES_2358 PF01678 Diaminopimelate epimerase AMES_2359 PF08264 Anticodon-binding domain of tRNA AMES_2359 PF00133 tRNA synthetases class I (I, L, M and V) AMES_2362 PF01926 50S ribosome-binding GTPase AMES_2362 PF13167 GTP-binding GTPase N-terminal AMES_2362 PF16360 GTP-binding GTPase Middle Region AMES_2364 PF01726 LexA DNA binding domain AMES_2364 PF00717 Peptidase S24-like AMES_2366 PF03477 ATP cone domain AMES_2367 PF02867 Ribonucleotide reductase, barrel domain AMES_2367 PF08471 Class II vitamin B12-dependent ribonucleotide reductase AMES_2371 PF02525 Flavodoxin-like fold AMES_2372 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AMES_2372 PF00326 Prolyl oligopeptidase family AMES_2376 PF00155 Aminotransferase class I and II AMES_2376 PF00392 Bacterial regulatory proteins, gntR family AMES_2380 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMES_2380 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AMES_2381 PF02698 DUF218 domain AMES_2382 PF08031 Berberine and berberine like AMES_2382 PF01565 FAD binding domain AMES_2383 PF00072 Response regulator receiver domain AMES_2383 PF00196 Bacterial regulatory proteins, luxR family AMES_2384 PF07730 Histidine kinase AMES_2387 PF01370 NAD dependent epimerase/dehydratase family AMES_2388 PF10509 Galactokinase galactose-binding signature AMES_2388 PF00288 GHMP kinases N terminal domain AMES_2388 PF08544 GHMP kinases C terminal AMES_2389 PF01325 Iron dependent repressor, N-terminal DNA binding domain AMES_2389 PF02742 Iron dependent repressor, metal binding and dimerisation domain AMES_2389 PF18357 Diphteria toxin repressor SH3 domain AMES_2390 PF00581 Rhodanese-like domain AMES_2391 PF00850 Histone deacetylase domain AMES_2393 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_2393 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_2394 PF00144 Beta-lactamase AMES_2395 PF02770 Acyl-CoA dehydrogenase, middle domain AMES_2395 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_2395 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_2399 PF02405 Permease MlaE AMES_2400 PF02405 Permease MlaE AMES_2410 PF12897 Alanine-glyoxylate amino-transferase AMES_2412 PF01494 FAD binding domain AMES_2413 PF00356 Bacterial regulatory proteins, lacI family AMES_2415 PF00528 Binding-protein-dependent transport system inner membrane component AMES_2416 PF00528 Binding-protein-dependent transport system inner membrane component AMES_2417 PF00232 Glycosyl hydrolase family 1 AMES_2418 PF00501 AMP-binding enzyme AMES_2422 PF02374 Anion-transporting ATPase AMES_2422 PF17886 HSP20-like domain found in ArsA AMES_2424 PF00480 ROK family AMES_2426 PF04107 Glutamate-cysteine ligase family 2(GCS2) AMES_2429 PF12146 Serine aminopeptidase, S33 AMES_2430 PF01553 Acyltransferase AMES_2431 PF16473 3' exoribonuclease, RNase T-like AMES_2432 PF00793 DAHP synthetase I family AMES_2433 PF00365 Phosphofructokinase AMES_2435 PF04542 Sigma-70 region 2 AMES_2435 PF08281 Sigma-70, region 4 AMES_2436 PF00221 Aromatic amino acid lyase AMES_2438 PF01638 HxlR-like helix-turn-helix AMES_2439 PF01022 Bacterial regulatory protein, arsR family AMES_2440 PF00704 Glycosyl hydrolases family 18 AMES_2440 PF00041 Fibronectin type III domain AMES_2440 PF00553 Cellulose binding domain AMES_2442 PF00224 Pyruvate kinase, barrel domain AMES_2442 PF02887 Pyruvate kinase, alpha/beta domain AMES_2447 PF00196 Bacterial regulatory proteins, luxR family AMES_2447 PF00072 Response regulator receiver domain AMES_2448 PF00171 Aldehyde dehydrogenase family AMES_2450 PF00440 Bacterial regulatory proteins, tetR family AMES_2451 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_2451 PF02770 Acyl-CoA dehydrogenase, middle domain AMES_2451 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_2452 PF02515 CoA-transferase family III AMES_2454 PF00378 Enoyl-CoA hydratase/isomerase AMES_2458 PF07690 Major Facilitator Superfamily AMES_2460 PF00440 Bacterial regulatory proteins, tetR family AMES_2461 PF00474 Sodium:solute symporter family AMES_2464 PF03259 Roadblock/LC7 domain AMES_2470 PF13847 Methyltransferase domain AMES_2471 PF02310 B12 binding domain AMES_2471 PF01642 Methylmalonyl-CoA mutase AMES_2472 PF00296 Luciferase-like monooxygenase AMES_2473 PF00440 Bacterial regulatory proteins, tetR family AMES_2473 PF17925 Tetracyclin repressor-like, C-terminal domain AMES_2474 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_2474 PF02770 Acyl-CoA dehydrogenase, middle domain AMES_2474 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_2475 PF00176 SNF2 family N-terminal domain AMES_2475 PF00271 Helicase conserved C-terminal domain AMES_2475 PF12419 SNF2 Helicase protein AMES_2478 PF04075 F420H(2)-dependent quinone reductase AMES_2479 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain AMES_2479 PF06974 Protein of unknown function (DUF1298) AMES_2480 PF00561 alpha/beta hydrolase fold AMES_2481 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_2481 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_2482 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_2482 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_2482 PF02770 Acyl-CoA dehydrogenase, middle domain AMES_2483 PF13452 N-terminal half of MaoC dehydratase AMES_2487 PF06574 FAD synthetase AMES_2487 PF01687 Riboflavin kinase AMES_2489 PF00175 Oxidoreductase NAD-binding domain AMES_2489 PF00111 2Fe-2S iron-sulfur cluster binding domain AMES_2489 PF00970 Oxidoreductase FAD-binding domain AMES_2491 PF00355 Rieske [2Fe-2S] domain AMES_2493 PF00890 FAD binding domain AMES_2494 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AMES_2494 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_2495 PF12697 Alpha/beta hydrolase family AMES_2496 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMES_2497 PF01613 Flavin reductase like domain AMES_2500 PF12706 Beta-lactamase superfamily domain AMES_2501 PF00487 Fatty acid desaturase AMES_2502 PF17760 UvrA interaction domain AMES_2502 PF17755 UvrA DNA-binding domain AMES_2502 PF00005 ABC transporter AMES_2506 PF03466 LysR substrate binding domain AMES_2506 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMES_2507 PF07690 Major Facilitator Superfamily AMES_2508 PF14759 Reductase C-terminal AMES_2508 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMES_2513 PF04545 Sigma-70, region 4 AMES_2513 PF04542 Sigma-70 region 2 AMES_2520 PF01979 Amidohydrolase family AMES_2521 PF00561 alpha/beta hydrolase fold AMES_2522 PF00108 Thiolase, N-terminal domain AMES_2522 PF02803 Thiolase, C-terminal domain AMES_2524 PF00067 Cytochrome P450 AMES_2526 PF03631 Virulence factor BrkB AMES_2530 PF00378 Enoyl-CoA hydratase/isomerase AMES_2531 PF13193 AMP-binding enzyme C-terminal domain AMES_2531 PF00501 AMP-binding enzyme AMES_2532 PF03060 Nitronate monooxygenase AMES_2533 PF00089 Trypsin AMES_2534 PF13520 Amino acid permease AMES_2535 PF07702 UTRA domain AMES_2535 PF00392 Bacterial regulatory proteins, gntR family AMES_2539 PF05683 Fumarase C-terminus AMES_2539 PF05681 Fumarate hydratase (Fumerase) AMES_2540 PF04545 Sigma-70, region 4 AMES_2540 PF04539 Sigma-70 region 3 AMES_2540 PF04542 Sigma-70 region 2 AMES_2540 PF00140 Sigma-70 factor, region 1.2 AMES_2541 PF02580 D-Tyr-tRNA(Tyr) deacylase AMES_2542 PF17827 PrmC N-terminal domain AMES_2542 PF05175 Methyltransferase small domain AMES_2543 PF07687 Peptidase dimerisation domain AMES_2543 PF01546 Peptidase family M20/M25/M40 AMES_2545 PF00294 pfkB family carbohydrate kinase AMES_2546 PF04227 Indigoidine synthase A like protein AMES_2551 PF00873 AcrB/AcrD/AcrF family AMES_2553 PF04851 Type III restriction enzyme, res subunit AMES_2554 PF13407 Periplasmic binding protein domain AMES_2555 PF00005 ABC transporter AMES_2556 PF02653 Branched-chain amino acid transport system / permease component AMES_2560 PF00120 Glutamine synthetase, catalytic domain AMES_2560 PF03951 Glutamine synthetase, beta-Grasp domain AMES_2561 PF13520 Amino acid permease AMES_2563 PF02446 4-alpha-glucanotransferase AMES_2564 PF00128 Alpha amylase, catalytic domain AMES_2564 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMES_2565 PF00128 Alpha amylase, catalytic domain AMES_2566 PF00128 Alpha amylase, catalytic domain AMES_2566 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMES_2567 PF00128 Alpha amylase, catalytic domain AMES_2567 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMES_2568 PF00128 Alpha amylase, catalytic domain AMES_2568 PF11896 Domain of unknown function (DUF3416) AMES_2569 PF16657 Maltogenic Amylase, C-terminal domain AMES_2569 PF00128 Alpha amylase, catalytic domain AMES_2570 PF18085 Maltokinase N-terminal cap domain AMES_2571 PF00128 Alpha amylase, catalytic domain AMES_2571 PF02806 Alpha amylase, C-terminal all-beta domain AMES_2571 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMES_2573 PF04542 Sigma-70 region 2 AMES_2573 PF04539 Sigma-70 region 3 AMES_2573 PF00140 Sigma-70 factor, region 1.2 AMES_2573 PF04545 Sigma-70, region 4 AMES_2574 PF00480 ROK family AMES_2575 PF00459 Inositol monophosphatase family AMES_2579 PF00692 dUTPase AMES_2584 PF02080 TrkA-C domain AMES_2584 PF02254 TrkA-N domain AMES_2585 PF02254 TrkA-N domain AMES_2585 PF02080 TrkA-C domain AMES_2586 PF13520 Amino acid permease AMES_2587 PF01938 TRAM domain AMES_2587 PF05958 tRNA (Uracil-5-)-methyltransferase AMES_2590 PF02780 Transketolase, C-terminal domain AMES_2590 PF02779 Transketolase, pyrimidine binding domain AMES_2590 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AMES_2591 PF00356 Bacterial regulatory proteins, lacI family AMES_2592 PF00171 Aldehyde dehydrogenase family AMES_2593 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMES_2593 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMES_2593 PF00205 Thiamine pyrophosphate enzyme, central domain AMES_2594 PF00491 Arginase family AMES_2596 PF13556 PucR C-terminal helix-turn-helix domain AMES_2597 PF00072 Response regulator receiver domain AMES_2597 PF00486 Transcriptional regulatory protein, C terminal AMES_2598 PF00512 His Kinase A (phospho-acceptor) domain AMES_2598 PF00672 HAMP domain AMES_2598 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_2599 PF07859 alpha/beta hydrolase fold AMES_2601 PF00378 Enoyl-CoA hydratase/isomerase AMES_2601 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMES_2601 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMES_2603 PF02803 Thiolase, C-terminal domain AMES_2603 PF00108 Thiolase, N-terminal domain AMES_2606 PF01425 Amidase AMES_2607 PF02785 Biotin carboxylase C-terminal domain AMES_2607 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMES_2607 PF00289 Biotin carboxylase, N-terminal domain AMES_2607 PF00364 Biotin-requiring enzyme AMES_2610 PF13520 Amino acid permease AMES_2611 PF00440 Bacterial regulatory proteins, tetR family AMES_2611 PF02909 Tetracyclin repressor-like, C-terminal domain AMES_2613 PF00196 Bacterial regulatory proteins, luxR family AMES_2613 PF00072 Response regulator receiver domain AMES_2615 PF01208 Uroporphyrinogen decarboxylase (URO-D) AMES_2618 PF02515 CoA-transferase family III AMES_2620 PF05114 Protein of unknown function (DUF692) AMES_2623 PF01641 SelR domain AMES_2625 PF00069 Protein kinase domain AMES_2625 PF03793 PASTA domain AMES_2626 PF09335 SNARE associated Golgi protein AMES_2627 PF04679 ATP dependent DNA ligase C terminal region AMES_2627 PF01068 ATP dependent DNA ligase domain AMES_2627 PF13298 DNA polymerase Ligase (LigD) AMES_2629 PF00296 Luciferase-like monooxygenase AMES_2630 PF00575 S1 RNA binding domain AMES_2632 PF17853 GGDEF-like domain AMES_2632 PF13556 PucR C-terminal helix-turn-helix domain AMES_2632 PF06018 CodY GAF-like domain AMES_2633 PF00171 Aldehyde dehydrogenase family AMES_2634 PF01619 Proline dehydrogenase AMES_2635 PF00085 Thioredoxin AMES_2636 PF10944 Protein of unknown function (DUF2630) AMES_2637 PF03795 YCII-related domain AMES_2639 PF08281 Sigma-70, region 4 AMES_2639 PF04542 Sigma-70 region 2 AMES_2641 PF04679 ATP dependent DNA ligase C terminal region AMES_2641 PF01068 ATP dependent DNA ligase domain AMES_2646 PF03780 Asp23 family, cell envelope-related function AMES_2648 PF04542 Sigma-70 region 2 AMES_2648 PF08281 Sigma-70, region 4 AMES_2652 PF02449 Beta-galactosidase AMES_2652 PF08533 Beta-galactosidase C-terminal domain AMES_2652 PF08532 Beta-galactosidase trimerisation domain AMES_2653 PF01266 FAD dependent oxidoreductase AMES_2655 PF00202 Aminotransferase class-III AMES_2656 PF01022 Bacterial regulatory protein, arsR family AMES_2658 PF03976 Polyphosphate kinase 2 (PPK2) AMES_2659 PF00326 Prolyl oligopeptidase family AMES_2659 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AMES_2661 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AMES_2662 PF02641 Uncharacterized ACR, COG1993 AMES_2663 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AMES_2664 PF00282 Pyridoxal-dependent decarboxylase conserved domain AMES_2665 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AMES_2666 PF06276 Ferric iron reductase FhuF-like transporter AMES_2666 PF04183 IucA / IucC family AMES_2667 PF00120 Glutamine synthetase, catalytic domain AMES_2668 PF08031 Berberine and berberine like AMES_2668 PF01565 FAD binding domain AMES_2669 PF00211 Adenylate and Guanylate cyclase catalytic domain AMES_2669 PF13191 AAA ATPase domain AMES_2670 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMES_2670 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMES_2671 PF04055 Radical SAM superfamily AMES_2671 PF04055 Radical SAM superfamily AMES_2673 PF00152 tRNA synthetases class II (D, K and N) AMES_2673 PF01336 OB-fold nucleic acid binding domain AMES_2673 PF02938 GAD domain AMES_2678 PF00067 Cytochrome P450 AMES_2679 PF00440 Bacterial regulatory proteins, tetR family AMES_2680 PF16193 AAA C-terminal domain AMES_2680 PF00004 ATPase family associated with various cellular activities (AAA) AMES_2680 PF12002 MgsA AAA+ ATPase C terminal AMES_2682 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMES_2682 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMES_2685 PF02272 DHHA1 domain AMES_2685 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMES_2685 PF01411 tRNA synthetases class II (A) AMES_2686 PF03652 Holliday junction resolvase AMES_2687 PF02618 YceG-like family AMES_2688 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AMES_2688 PF01488 Shikimate / quinate 5-dehydrogenase AMES_2688 PF08501 Shikimate dehydrogenase substrate binding domain AMES_2689 PF00440 Bacterial regulatory proteins, tetR family AMES_2689 PF16295 Tetracyclin repressor-like, C-terminal domain AMES_2690 PF04229 GrpB protein AMES_2692 PF12146 Serine aminopeptidase, S33 AMES_2692 PF13026 Protein of unknown function (DUF3887) AMES_2694 PF01842 ACT domain AMES_2694 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMES_2694 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMES_2696 PF00381 PTS HPr component phosphorylation site AMES_2697 PF00367 phosphotransferase system, EIIB AMES_2697 PF02378 Phosphotransferase system, EIIC AMES_2699 PF00367 phosphotransferase system, EIIB AMES_2699 PF02378 Phosphotransferase system, EIIC AMES_2700 PF02378 Phosphotransferase system, EIIC AMES_2700 PF00367 phosphotransferase system, EIIB AMES_2700 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AMES_2703 PF04542 Sigma-70 region 2 AMES_2703 PF04545 Sigma-70, region 4 AMES_2705 PF01264 Chorismate synthase AMES_2706 PF01202 Shikimate kinase AMES_2707 PF01761 3-dehydroquinate synthase AMES_2708 PF01220 Dehydroquinase class II AMES_2712 PF00557 Metallopeptidase family M24 AMES_2712 PF01321 Creatinase/Prolidase N-terminal domain AMES_2713 PF09285 Elongation factor P, C-terminal AMES_2713 PF08207 Elongation factor P (EF-P) KOW-like domain AMES_2713 PF01132 Elongation factor P (EF-P) OB domain AMES_2714 PF01029 NusB family AMES_2717 PF00156 Phosphoribosyl transferase domain AMES_2718 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMES_2718 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMES_2719 PF01979 Amidohydrolase family AMES_2721 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AMES_2721 PF00117 Glutamine amidotransferase class-I AMES_2722 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system AMES_2724 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMES_2724 PF02142 MGS-like domain AMES_2724 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AMES_2725 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AMES_2727 PF00625 Guanylate kinase AMES_2728 PF01192 RNA polymerase Rpb6 AMES_2729 PF02441 Flavoprotein AMES_2729 PF04127 DNA / pantothenate metabolism flavoprotein AMES_2730 PF00438 S-adenosylmethionine synthetase, N-terminal domain AMES_2730 PF02773 S-adenosylmethionine synthetase, C-terminal domain AMES_2730 PF02772 S-adenosylmethionine synthetase, central domain AMES_2731 PF17764 3′ DNA-binding domain (3′BD) AMES_2736 PF02911 Formyl transferase, C-terminal domain AMES_2736 PF00551 Formyl transferase AMES_2737 PF01189 16S rRNA methyltransferase RsmB/F AMES_2737 PF01029 NusB family AMES_2738 PF02441 Flavoprotein AMES_2738 PF04127 DNA / pantothenate metabolism flavoprotein AMES_2739 PF00144 Beta-lactamase AMES_2740 PF00245 Alkaline phosphatase AMES_2741 PF00196 Bacterial regulatory proteins, luxR family AMES_2741 PF00072 Response regulator receiver domain AMES_2742 PF07730 Histidine kinase AMES_2743 PF00834 Ribulose-phosphate 3 epimerase family AMES_2744 PF00677 Lumazine binding domain AMES_2745 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AMES_2745 PF00925 GTP cyclohydrolase II AMES_2746 PF00885 6,7-dimethyl-8-ribityllumazine synthase AMES_2747 PF10756 Bacterial PH domain AMES_2750 PF08459 UvrC Helix-hairpin-helix N-terminal AMES_2750 PF01541 GIY-YIG catalytic domain AMES_2750 PF02151 UvrB/uvrC motif AMES_2751 PF03668 P-loop ATPase protein family AMES_2752 PF01933 Uncharacterised protein family UPF0052 AMES_2753 PF02650 WhiA C-terminal HTH domain AMES_2753 PF14527 WhiA LAGLIDADG-like domain AMES_2753 PF10298 WhiA N-terminal LAGLIDADG-like domain AMES_2754 PF00535 Glycosyl transferase family 2 AMES_2755 PF04116 Fatty acid hydroxylase superfamily AMES_2759 PF16990 Carbohydrate binding module (family 35) AMES_2759 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain AMES_2759 PF00703 Glycosyl hydrolases family 2 AMES_2759 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMES_2760 PF01218 Coproporphyrinogen III oxidase AMES_2767 PF01810 LysE type translocator AMES_2770 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AMES_2770 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMES_2771 PF00162 Phosphoglycerate kinase AMES_2772 PF00121 Triosephosphate isomerase AMES_2773 PF03840 Preprotein translocase SecG subunit AMES_2775 PF17200 Single Cache domain 2 AMES_2775 PF07730 Histidine kinase AMES_2776 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AMES_2778 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AMES_2778 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AMES_2779 PF00342 Phosphoglucose isomerase AMES_2780 PF00923 Transaldolase/Fructose-6-phosphate aldolase AMES_2781 PF02779 Transketolase, pyrimidine binding domain AMES_2781 PF02780 Transketolase, C-terminal domain AMES_2781 PF00456 Transketolase, thiamine diphosphate binding domain AMES_2782 PF01040 UbiA prenyltransferase family AMES_2789 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMES_2790 PF08240 Alcohol dehydrogenase GroES-like domain AMES_2790 PF00107 Zinc-binding dehydrogenase AMES_2798 PF00005 ABC transporter AMES_2798 PF13732 Domain of unknown function (DUF4162) AMES_2801 PF01458 Uncharacterized protein family (UPF0051) AMES_2802 PF01458 Uncharacterized protein family (UPF0051) AMES_2803 PF00005 ABC transporter AMES_2804 PF00266 Aminotransferase class-V AMES_2805 PF01592 NifU-like N terminal domain AMES_2806 PF01883 Iron-sulfur cluster assembly protein AMES_2808 PF02694 Uncharacterised BCR, YnfA/UPF0060 family AMES_2810 PF03109 ABC1 family AMES_2811 PF02031 Streptomyces extracellular neutral proteinase (M7) family AMES_2812 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_2812 PF07730 Histidine kinase AMES_2813 PF00196 Bacterial regulatory proteins, luxR family AMES_2813 PF00072 Response regulator receiver domain AMES_2814 PF01209 ubiE/COQ5 methyltransferase family AMES_2816 PF00009 Elongation factor Tu GTP binding domain AMES_2817 PF01507 Phosphoadenosine phosphosulfate reductase family AMES_2820 PF00106 short chain dehydrogenase AMES_2822 PF13181 Tetratricopeptide repeat AMES_2825 PF03707 Bacterial signalling protein N terminal repeat AMES_2825 PF00563 EAL domain AMES_2825 PF00990 Diguanylate cyclase, GGDEF domain AMES_2829 PF01966 HD domain AMES_2829 PF13286 Phosphohydrolase-associated domain AMES_2835 PF00296 Luciferase-like monooxygenase AMES_2837 PF00664 ABC transporter transmembrane region AMES_2837 PF00005 ABC transporter AMES_2839 PF13580 SIS domain AMES_2842 PF03816 Cell envelope-related transcriptional attenuator domain AMES_2843 PF00578 AhpC/TSA family AMES_2844 PF13302 Acetyltransferase (GNAT) domain AMES_2845 PF00563 EAL domain AMES_2845 PF00990 Diguanylate cyclase, GGDEF domain AMES_2845 PF03707 Bacterial signalling protein N terminal repeat AMES_2846 PF00067 Cytochrome P450 AMES_2848 PF00293 NUDIX domain AMES_2849 PF00268 Ribonucleotide reductase, small chain AMES_2850 PF02867 Ribonucleotide reductase, barrel domain AMES_2850 PF00317 Ribonucleotide reductase, all-alpha domain AMES_2850 PF03477 ATP cone domain AMES_2852 PF00378 Enoyl-CoA hydratase/isomerase AMES_2855 PF08608 Wyosine base formation AMES_2855 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AMES_2857 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_2857 PF02770 Acyl-CoA dehydrogenase, middle domain AMES_2857 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_2858 PF01039 Carboxyl transferase domain AMES_2859 PF00289 Biotin carboxylase, N-terminal domain AMES_2859 PF00364 Biotin-requiring enzyme AMES_2859 PF02785 Biotin carboxylase C-terminal domain AMES_2859 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMES_2860 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_2860 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_2860 PF02770 Acyl-CoA dehydrogenase, middle domain AMES_2864 PF03023 Lipid II flippase MurJ AMES_2867 PF17151 Periplasmic sensor domain AMES_2867 PF00990 Diguanylate cyclase, GGDEF domain AMES_2869 PF14226 non-haem dioxygenase in morphine synthesis N-terminal AMES_2869 PF03171 2OG-Fe(II) oxygenase superfamily AMES_2873 PF00440 Bacterial regulatory proteins, tetR family AMES_2874 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMES_2874 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMES_2875 PF00440 Bacterial regulatory proteins, tetR family AMES_2876 PF03664 Glycosyl hydrolase family 62 AMES_2876 PF00652 Ricin-type beta-trefoil lectin domain AMES_2880 PF00440 Bacterial regulatory proteins, tetR family AMES_2880 PF17754 MftR C-terminal domain AMES_2881 PF13411 MerR HTH family regulatory protein AMES_2884 PF12894 Anaphase-promoting complex subunit 4 WD40 domain AMES_2884 PF00400 WD domain, G-beta repeat AMES_2885 PF01494 FAD binding domain AMES_2887 PF01494 FAD binding domain AMES_2899 PF00561 alpha/beta hydrolase fold AMES_2900 PF00072 Response regulator receiver domain AMES_2900 PF00196 Bacterial regulatory proteins, luxR family AMES_2913 PF00106 short chain dehydrogenase AMES_2915 PF01047 MarR family AMES_2921 PF04542 Sigma-70 region 2 AMES_2921 PF04545 Sigma-70, region 4 AMES_2923 PF12327 FtsZ family, C-terminal domain AMES_2923 PF00091 Tubulin/FtsZ family, GTPase domain AMES_2925 PF01168 Alanine racemase, N-terminal domain AMES_2926 PF04472 Cell division protein SepF AMES_2928 PF05103 DivIVA protein AMES_2931 PF07690 Major Facilitator Superfamily AMES_2932 PF00133 tRNA synthetases class I (I, L, M and V) AMES_2932 PF08264 Anticodon-binding domain of tRNA AMES_2935 PF00999 Sodium/hydrogen exchanger family AMES_2935 PF02080 TrkA-C domain AMES_2935 PF03471 Transporter associated domain AMES_2936 PF00266 Aminotransferase class-V AMES_2938 PF01252 Signal peptidase (SPase) II AMES_2940 PF00849 RNA pseudouridylate synthase AMES_2943 PF00296 Luciferase-like monooxygenase AMES_2945 PF02541 Ppx/GppA phosphatase family AMES_2946 PF03636 Glycosyl hydrolase family 65, N-terminal domain AMES_2946 PF03633 Glycosyl hydrolase family 65, C-terminal domain AMES_2946 PF03632 Glycosyl hydrolase family 65 central catalytic domain AMES_2947 PF13419 Haloacid dehalogenase-like hydrolase AMES_2948 PF01022 Bacterial regulatory protein, arsR family AMES_2952 PF00480 ROK family AMES_2955 PF03055 Retinal pigment epithelial membrane protein AMES_2959 PF08281 Sigma-70, region 4 AMES_2959 PF04542 Sigma-70 region 2 AMES_2960 PF00034 Cytochrome c AMES_2960 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMES_2960 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMES_2961 PF00111 2Fe-2S iron-sulfur cluster binding domain AMES_2961 PF01799 [2Fe-2S] binding domain AMES_2963 PF17853 GGDEF-like domain AMES_2963 PF13556 PucR C-terminal helix-turn-helix domain AMES_2965 PF08359 YsiA-like protein, C-terminal region AMES_2965 PF00440 Bacterial regulatory proteins, tetR family AMES_2966 PF00106 short chain dehydrogenase AMES_2967 PF00248 Aldo/keto reductase family AMES_2968 PF07724 AAA domain (Cdc48 subfamily) AMES_2968 PF02861 Clp amino terminal domain, pathogenicity island component AMES_2968 PF00004 ATPase family associated with various cellular activities (AAA) AMES_2968 PF17871 AAA lid domain AMES_2968 PF10431 C-terminal, D2-small domain, of ClpB protein AMES_2969 PF00962 Adenosine/AMP deaminase AMES_2972 PF00270 DEAD/DEAH box helicase AMES_2972 PF00271 Helicase conserved C-terminal domain AMES_2972 PF00570 HRDC domain AMES_2972 PF16124 RecQ zinc-binding AMES_2972 PF09382 RQC domain AMES_2977 PF00376 MerR family regulatory protein AMES_2977 PF09278 MerR, DNA binding AMES_2981 PF00512 His Kinase A (phospho-acceptor) domain AMES_2981 PF00672 HAMP domain AMES_2981 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_2982 PF00072 Response regulator receiver domain AMES_2982 PF00486 Transcriptional regulatory protein, C terminal AMES_2985 PF00282 Pyridoxal-dependent decarboxylase conserved domain AMES_2986 PF00205 Thiamine pyrophosphate enzyme, central domain AMES_2986 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMES_2986 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMES_2988 PF05726 Pirin C-terminal cupin domain AMES_2988 PF02678 Pirin AMES_2989 PF00561 alpha/beta hydrolase fold AMES_2991 PF00436 Single-strand binding protein family AMES_2994 PF04075 F420H(2)-dependent quinone reductase AMES_2995 PF00905 Penicillin binding protein transpeptidase domain AMES_2995 PF00912 Transglycosylase AMES_2997 PF00005 ABC transporter AMES_2998 PF13732 Domain of unknown function (DUF4162) AMES_2998 PF00005 ABC transporter AMES_3001 PF08240 Alcohol dehydrogenase GroES-like domain AMES_3001 PF00107 Zinc-binding dehydrogenase AMES_3003 PF06983 3-demethylubiquinone-9 3-methyltransferase AMES_3005 PF13492 GAF domain AMES_3005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_3005 PF07730 Histidine kinase AMES_3006 PF00135 Carboxylesterase family AMES_3007 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMES_3007 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMES_3008 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMES_3008 PF00941 FAD binding domain in molybdopterin dehydrogenase AMES_3009 PF00111 2Fe-2S iron-sulfur cluster binding domain AMES_3009 PF01799 [2Fe-2S] binding domain AMES_3009 PF10518 TAT (twin-arginine translocation) pathway signal sequence AMES_3012 PF00171 Aldehyde dehydrogenase family AMES_3014 PF00392 Bacterial regulatory proteins, gntR family AMES_3014 PF07702 UTRA domain AMES_3016 PF13823 Alcohol dehydrogenase GroES-associated AMES_3016 PF00107 Zinc-binding dehydrogenase AMES_3016 PF08240 Alcohol dehydrogenase GroES-like domain AMES_3019 PF13581 Histidine kinase-like ATPase domain AMES_3020 PF01740 STAS domain AMES_3021 PF08678 Rsbr N terminal AMES_3021 PF01740 STAS domain AMES_3025 PF00011 Hsp20/alpha crystallin family AMES_3027 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMES_3028 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMES_3028 PF00128 Alpha amylase, catalytic domain AMES_3029 PF05067 Manganese containing catalase AMES_3031 PF05368 NmrA-like family AMES_3032 PF01638 HxlR-like helix-turn-helix AMES_3036 PF00356 Bacterial regulatory proteins, lacI family AMES_3038 PF00528 Binding-protein-dependent transport system inner membrane component AMES_3039 PF00528 Binding-protein-dependent transport system inner membrane component AMES_3042 PF00440 Bacterial regulatory proteins, tetR family AMES_3043 PF00248 Aldo/keto reductase family AMES_3044 PF00248 Aldo/keto reductase family AMES_3045 PF01965 DJ-1/PfpI family AMES_3045 PF12833 Helix-turn-helix domain AMES_3047 PF13280 WYL domain AMES_3047 PF08279 HTH domain AMES_3049 PF00731 AIR carboxylase AMES_3050 PF09861 Lactate racemase N-terminal domain AMES_3051 PF04909 Amidohydrolase AMES_3052 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMES_3053 PF13378 Enolase C-terminal domain-like AMES_3053 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMES_3056 PF00005 ABC transporter AMES_3057 PF02653 Branched-chain amino acid transport system / permease component AMES_3058 PF00248 Aldo/keto reductase family AMES_3063 PF00356 Bacterial regulatory proteins, lacI family AMES_3064 PF00356 Bacterial regulatory proteins, lacI family AMES_3065 PF13193 AMP-binding enzyme C-terminal domain AMES_3065 PF00501 AMP-binding enzyme AMES_3066 PF00561 alpha/beta hydrolase fold AMES_3067 PF11774 Lsr2 AMES_3068 PF13193 AMP-binding enzyme C-terminal domain AMES_3068 PF00550 Phosphopantetheine attachment site AMES_3068 PF00501 AMP-binding enzyme AMES_3068 PF00668 Condensation domain AMES_3069 PF03621 MbtH-like protein AMES_3070 PF00144 Beta-lactamase AMES_3071 PF00501 AMP-binding enzyme AMES_3071 PF13193 AMP-binding enzyme C-terminal domain AMES_3071 PF00668 Condensation domain AMES_3071 PF00550 Phosphopantetheine attachment site AMES_3073 PF00067 Cytochrome P450 AMES_3077 PF00107 Zinc-binding dehydrogenase AMES_3077 PF08240 Alcohol dehydrogenase GroES-like domain AMES_3080 PF18416 N-acetylglucosamine binding protein domain 2 AMES_3080 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AMES_3081 PF12706 Beta-lactamase superfamily domain AMES_3086 PF03364 Polyketide cyclase / dehydrase and lipid transport AMES_3095 PF00378 Enoyl-CoA hydratase/isomerase AMES_3096 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 AMES_3096 PF00703 Glycosyl hydrolases family 2 AMES_3096 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMES_3096 PF16355 Domain of unknown function (DUF4982) AMES_3096 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMES_3098 PF13193 AMP-binding enzyme C-terminal domain AMES_3098 PF00501 AMP-binding enzyme AMES_3099 PF00501 AMP-binding enzyme AMES_3099 PF13193 AMP-binding enzyme C-terminal domain AMES_3100 PF02126 Phosphotriesterase family AMES_3101 PF00440 Bacterial regulatory proteins, tetR family AMES_3101 PF17922 Tetracyclin repressor-like, C-terminal domain AMES_3102 PF00561 alpha/beta hydrolase fold AMES_3104 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_3104 PF02770 Acyl-CoA dehydrogenase, middle domain AMES_3104 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_3105 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_3105 PF02770 Acyl-CoA dehydrogenase, middle domain AMES_3105 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_3106 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_3106 PF02770 Acyl-CoA dehydrogenase, middle domain AMES_3106 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_3110 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMES_3110 PF13378 Enolase C-terminal domain-like AMES_3113 PF00528 Binding-protein-dependent transport system inner membrane component AMES_3114 PF03737 Aldolase/RraA AMES_3115 PF00069 Protein kinase domain AMES_3119 PF00196 Bacterial regulatory proteins, luxR family AMES_3119 PF00072 Response regulator receiver domain AMES_3122 PF07690 Major Facilitator Superfamily AMES_3124 PF00989 PAS fold AMES_3124 PF00512 His Kinase A (phospho-acceptor) domain AMES_3124 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_3124 PF16736 Single Cache-like AMES_3125 PF00072 Response regulator receiver domain AMES_3125 PF00486 Transcriptional regulatory protein, C terminal AMES_3128 PF00005 ABC transporter AMES_3132 PF00440 Bacterial regulatory proteins, tetR family AMES_3132 PF08362 YcdC-like protein, C-terminal region AMES_3137 PF03120 NAD-dependent DNA ligase OB-fold domain AMES_3137 PF12826 Helix-hairpin-helix motif AMES_3137 PF01653 NAD-dependent DNA ligase adenylation domain AMES_3138 PF00296 Luciferase-like monooxygenase AMES_3140 PF04542 Sigma-70 region 2 AMES_3140 PF08281 Sigma-70, region 4 AMES_3144 PF06441 Epoxide hydrolase N terminus AMES_3146 PF07690 Major Facilitator Superfamily AMES_3150 PF12680 SnoaL-like domain AMES_3150 PF08281 Sigma-70, region 4 AMES_3150 PF04542 Sigma-70 region 2 AMES_3153 PF03741 Integral membrane protein TerC family AMES_3155 PF00128 Alpha amylase, catalytic domain AMES_3157 PF01842 ACT domain AMES_3157 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMES_3157 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMES_3159 PF00528 Binding-protein-dependent transport system inner membrane component AMES_3162 PF08220 DeoR-like helix-turn-helix domain AMES_3162 PF00455 DeoR C terminal sensor domain AMES_3163 PF14032 PknH-like extracellular domain AMES_3163 PF00069 Protein kinase domain AMES_3164 PF00356 Bacterial regulatory proteins, lacI family AMES_3165 PF03793 PASTA domain AMES_3165 PF00069 Protein kinase domain AMES_3166 PF03793 PASTA domain AMES_3166 PF00069 Protein kinase domain AMES_3169 PF09163 Formate dehydrogenase N, transmembrane AMES_3169 PF12800 4Fe-4S binding domain AMES_3169 PF13247 4Fe-4S dicluster domain AMES_3171 PF00083 Sugar (and other) transporter AMES_3174 PF04978 Protein of unknown function (DUF664) AMES_3175 PF00891 O-methyltransferase domain AMES_3176 PF01381 Helix-turn-helix AMES_3179 PF00144 Beta-lactamase AMES_3180 PF00689 Cation transporting ATPase, C-terminus AMES_3182 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMES_3182 PF03466 LysR substrate binding domain AMES_3183 PF00296 Luciferase-like monooxygenase AMES_3185 PF00890 FAD binding domain AMES_3185 PF02910 Fumarate reductase flavoprotein C-term AMES_3186 PF13085 2Fe-2S iron-sulfur cluster binding domain AMES_3186 PF13183 4Fe-4S dicluster domain AMES_3193 PF04185 Phosphoesterase family AMES_3193 PF05506 Domain of unknown function (DUF756) AMES_3195 PF00891 O-methyltransferase domain AMES_3197 PF01266 FAD dependent oxidoreductase AMES_3199 PF04324 BFD-like [2Fe-2S] binding domain AMES_3199 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMES_3200 PF00701 Dihydrodipicolinate synthetase family AMES_3202 PF05544 Proline racemase AMES_3206 PF13649 Methyltransferase domain AMES_3207 PF00528 Binding-protein-dependent transport system inner membrane component AMES_3208 PF00528 Binding-protein-dependent transport system inner membrane component AMES_3218 PF01594 AI-2E family transporter AMES_3219 PF16369 C-terminal lipocalin-like domain AMES_3219 PF04616 Glycosyl hydrolases family 43 AMES_3220 PF04679 ATP dependent DNA ligase C terminal region AMES_3220 PF13298 DNA polymerase Ligase (LigD) AMES_3220 PF01068 ATP dependent DNA ligase domain AMES_3221 PF16859 Tetracyclin repressor-like, C-terminal domain AMES_3221 PF00440 Bacterial regulatory proteins, tetR family AMES_3223 PF13419 Haloacid dehalogenase-like hydrolase AMES_3224 PF01209 ubiE/COQ5 methyltransferase family AMES_3231 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMES_3231 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMES_3232 PF00501 AMP-binding enzyme AMES_3232 PF13193 AMP-binding enzyme C-terminal domain AMES_3233 PF00378 Enoyl-CoA hydratase/isomerase AMES_3234 PF13193 AMP-binding enzyme C-terminal domain AMES_3234 PF00501 AMP-binding enzyme AMES_3235 PF00107 Zinc-binding dehydrogenase AMES_3235 PF08240 Alcohol dehydrogenase GroES-like domain AMES_3236 PF00171 Aldehyde dehydrogenase family AMES_3240 PF00440 Bacterial regulatory proteins, tetR family AMES_3240 PF13305 Tetracyclin repressor-like, C-terminal domain AMES_3248 PF00150 Cellulase (glycosyl hydrolase family 5) AMES_3248 PF00553 Cellulose binding domain AMES_3249 PF00550 Phosphopantetheine attachment site AMES_3249 PF13193 AMP-binding enzyme C-terminal domain AMES_3249 PF00501 AMP-binding enzyme AMES_3250 PF03422 Carbohydrate binding module (family 6) AMES_3250 PF04616 Glycosyl hydrolases family 43 AMES_3251 PF00331 Glycosyl hydrolase family 10 AMES_3251 PF00652 Ricin-type beta-trefoil lectin domain AMES_3252 PF01341 Glycosyl hydrolases family 6 AMES_3252 PF00553 Cellulose binding domain AMES_3254 PF00652 Ricin-type beta-trefoil lectin domain AMES_3257 PF00652 Ricin-type beta-trefoil lectin domain AMES_3257 PF03664 Glycosyl hydrolase family 62 AMES_3260 PF00356 Bacterial regulatory proteins, lacI family AMES_3263 PF09995 Uncharacterized protein conserved in bacteria (DUF2236) AMES_3264 PF00440 Bacterial regulatory proteins, tetR family AMES_3265 PF04542 Sigma-70 region 2 AMES_3265 PF08281 Sigma-70, region 4 AMES_3268 PF00106 short chain dehydrogenase AMES_3269 PF00205 Thiamine pyrophosphate enzyme, central domain AMES_3269 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMES_3269 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMES_3271 PF06772 Bacterial low temperature requirement A protein (LtrA) AMES_3273 PF03259 Roadblock/LC7 domain AMES_3275 PF03707 Bacterial signalling protein N terminal repeat AMES_3275 PF00990 Diguanylate cyclase, GGDEF domain AMES_3275 PF00563 EAL domain AMES_3277 PF00392 Bacterial regulatory proteins, gntR family AMES_3277 PF07702 UTRA domain AMES_3278 PF02838 Glycosyl hydrolase family 20, domain 2 AMES_3278 PF00728 Glycosyl hydrolase family 20, catalytic domain AMES_3278 PF07691 PA14 domain AMES_3279 PF00528 Binding-protein-dependent transport system inner membrane component AMES_3280 PF00528 Binding-protein-dependent transport system inner membrane component AMES_3283 PF00291 Pyridoxal-phosphate dependent enzyme AMES_3283 PF00585 C-terminal regulatory domain of Threonine dehydratase AMES_3285 PF01451 Low molecular weight phosphotyrosine protein phosphatase AMES_3286 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_3286 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_3286 PF02770 Acyl-CoA dehydrogenase, middle domain AMES_3287 PF00196 Bacterial regulatory proteins, luxR family AMES_3290 PF00990 Diguanylate cyclase, GGDEF domain AMES_3290 PF00072 Response regulator receiver domain AMES_3291 PF00356 Bacterial regulatory proteins, lacI family AMES_3296 PF00440 Bacterial regulatory proteins, tetR family AMES_3296 PF13305 Tetracyclin repressor-like, C-terminal domain AMES_3297 PF00089 Trypsin AMES_3298 PF00440 Bacterial regulatory proteins, tetR family AMES_3300 PF08281 Sigma-70, region 4 AMES_3300 PF04542 Sigma-70 region 2 AMES_3302 PF00925 GTP cyclohydrolase II AMES_3306 PF00440 Bacterial regulatory proteins, tetR family AMES_3306 PF16859 Tetracyclin repressor-like, C-terminal domain AMES_3307 PF08386 TAP-like protein AMES_3307 PF00561 alpha/beta hydrolase fold AMES_3312 PF00296 Luciferase-like monooxygenase AMES_3314 PF02909 Tetracyclin repressor-like, C-terminal domain AMES_3314 PF00440 Bacterial regulatory proteins, tetR family AMES_3315 PF04607 Region found in RelA / SpoT proteins AMES_3316 PF00067 Cytochrome P450 AMES_3319 PF01810 LysE type translocator AMES_3320 PF00684 DnaJ central domain AMES_3320 PF01556 DnaJ C terminal domain AMES_3320 PF00226 DnaJ domain AMES_3321 PF13193 AMP-binding enzyme C-terminal domain AMES_3321 PF00501 AMP-binding enzyme AMES_3324 PF01263 Aldose 1-epimerase AMES_3326 PF03176 MMPL family AMES_3327 PF07690 Major Facilitator Superfamily AMES_3328 PF00501 AMP-binding enzyme AMES_3329 PF08659 KR domain AMES_3329 PF00698 Acyl transferase domain AMES_3329 PF16197 Ketoacyl-synthetase C-terminal extension AMES_3329 PF00109 Beta-ketoacyl synthase, N-terminal domain AMES_3329 PF14765 Polyketide synthase dehydratase AMES_3329 PF00550 Phosphopantetheine attachment site AMES_3329 PF02801 Beta-ketoacyl synthase, C-terminal domain AMES_3330 PF01039 Carboxyl transferase domain AMES_3338 PF00378 Enoyl-CoA hydratase/isomerase AMES_3339 PF01144 Coenzyme A transferase AMES_3341 PF03060 Nitronate monooxygenase AMES_3342 PF00296 Luciferase-like monooxygenase AMES_3343 PF00108 Thiolase, N-terminal domain AMES_3343 PF02803 Thiolase, C-terminal domain AMES_3345 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_3345 PF02770 Acyl-CoA dehydrogenase, middle domain AMES_3345 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_3346 PF13193 AMP-binding enzyme C-terminal domain AMES_3346 PF00501 AMP-binding enzyme AMES_3347 PF00378 Enoyl-CoA hydratase/isomerase AMES_3348 PF02770 Acyl-CoA dehydrogenase, middle domain AMES_3348 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_3348 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_3349 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_3349 PF02770 Acyl-CoA dehydrogenase, middle domain AMES_3349 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_3351 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_3351 PF02770 Acyl-CoA dehydrogenase, middle domain AMES_3351 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_3353 PF07729 FCD domain AMES_3353 PF00392 Bacterial regulatory proteins, gntR family AMES_3354 PF01223 DNA/RNA non-specific endonuclease AMES_3357 PF08240 Alcohol dehydrogenase GroES-like domain AMES_3357 PF00107 Zinc-binding dehydrogenase AMES_3358 PF00561 alpha/beta hydrolase fold AMES_3359 PF00672 HAMP domain AMES_3359 PF00211 Adenylate and Guanylate cyclase catalytic domain AMES_3361 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMES_3361 PF00037 4Fe-4S binding domain AMES_3362 PF04072 Leucine carboxyl methyltransferase AMES_3363 PF00440 Bacterial regulatory proteins, tetR family AMES_3366 PF00356 Bacterial regulatory proteins, lacI family AMES_3367 PF17801 Alpha galactosidase C-terminal beta sandwich domain AMES_3367 PF16499 Alpha galactosidase A AMES_3368 PF13416 Bacterial extracellular solute-binding protein AMES_3369 PF00528 Binding-protein-dependent transport system inner membrane component AMES_3370 PF00528 Binding-protein-dependent transport system inner membrane component AMES_3371 PF07944 Beta-L-arabinofuranosidase, GH127 AMES_3375 PF02031 Streptomyces extracellular neutral proteinase (M7) family AMES_3376 PF00440 Bacterial regulatory proteins, tetR family AMES_3377 PF07690 Major Facilitator Superfamily AMES_3379 PF00480 ROK family AMES_3380 PF13520 Amino acid permease AMES_3381 PF16990 Carbohydrate binding module (family 35) AMES_3381 PF00703 Glycosyl hydrolases family 2 AMES_3381 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMES_3381 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain AMES_3382 PF00480 ROK family AMES_3384 PF00356 Bacterial regulatory proteins, lacI family AMES_3387 PF00067 Cytochrome P450 AMES_3393 PF00849 RNA pseudouridylate synthase AMES_3393 PF01479 S4 domain AMES_3395 PF01047 MarR family AMES_3397 PF00296 Luciferase-like monooxygenase AMES_3398 PF04226 Transglycosylase associated protein AMES_3399 PF00753 Metallo-beta-lactamase superfamily AMES_3406 PF00501 AMP-binding enzyme AMES_3406 PF13193 AMP-binding enzyme C-terminal domain AMES_3407 PF01975 Survival protein SurE AMES_3411 PF08240 Alcohol dehydrogenase GroES-like domain AMES_3412 PF01370 NAD dependent epimerase/dehydratase family AMES_3417 PF07969 Amidohydrolase family AMES_3420 PF13378 Enolase C-terminal domain-like AMES_3420 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMES_3421 PF00144 Beta-lactamase AMES_3424 PF00528 Binding-protein-dependent transport system inner membrane component AMES_3425 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMES_3425 PF00005 ABC transporter AMES_3426 PF00005 ABC transporter AMES_3426 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMES_3427 PF00144 Beta-lactamase AMES_3428 PF07690 Major Facilitator Superfamily AMES_3433 PF07690 Major Facilitator Superfamily AMES_3434 PF00067 Cytochrome P450 AMES_3435 PF01726 LexA DNA binding domain AMES_3435 PF00717 Peptidase S24-like AMES_3436 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AMES_3438 PF08240 Alcohol dehydrogenase GroES-like domain AMES_3438 PF00550 Phosphopantetheine attachment site AMES_3438 PF08659 KR domain AMES_3438 PF14765 Polyketide synthase dehydratase AMES_3438 PF02801 Beta-ketoacyl synthase, C-terminal domain AMES_3438 PF00109 Beta-ketoacyl synthase, N-terminal domain AMES_3438 PF16197 Ketoacyl-synthetase C-terminal extension AMES_3438 PF00698 Acyl transferase domain AMES_3439 PF03422 Carbohydrate binding module (family 6) AMES_3439 PF04616 Glycosyl hydrolases family 43 AMES_3442 PF01593 Flavin containing amine oxidoreductase AMES_3443 PF00294 pfkB family carbohydrate kinase AMES_3444 PF00596 Class II Aldolase and Adducin N-terminal domain AMES_3444 PF01008 Initiation factor 2 subunit family AMES_3446 PF00893 Small Multidrug Resistance protein AMES_3448 PF03773 Predicted permease AMES_3451 PF00196 Bacterial regulatory proteins, luxR family AMES_3455 PF13193 AMP-binding enzyme C-terminal domain AMES_3455 PF00501 AMP-binding enzyme AMES_3456 PF00296 Luciferase-like monooxygenase AMES_3459 PF02801 Beta-ketoacyl synthase, C-terminal domain AMES_3459 PF00109 Beta-ketoacyl synthase, N-terminal domain AMES_3462 PF01161 Phosphatidylethanolamine-binding protein AMES_3465 PF00107 Zinc-binding dehydrogenase AMES_3465 PF08240 Alcohol dehydrogenase GroES-like domain AMES_3466 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMES_3466 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMES_3468 PF00196 Bacterial regulatory proteins, luxR family AMES_3471 PF00403 Heavy-metal-associated domain AMES_3472 PF01435 Peptidase family M48 AMES_3478 PF03358 NADPH-dependent FMN reductase AMES_3478 PF01566 Natural resistance-associated macrophage protein AMES_3479 PF02080 TrkA-C domain AMES_3479 PF02254 TrkA-N domain AMES_3479 PF00999 Sodium/hydrogen exchanger family AMES_3485 PF01370 NAD dependent epimerase/dehydratase family AMES_3485 PF00391 PEP-utilising enzyme, mobile domain AMES_3486 PF00176 SNF2 family N-terminal domain AMES_3486 PF00271 Helicase conserved C-terminal domain AMES_3486 PF12419 SNF2 Helicase protein AMES_3487 PF04434 SWIM zinc finger AMES_3495 PF01494 FAD binding domain AMES_3500 PF01645 Conserved region in glutamate synthase AMES_3501 PF00072 Response regulator receiver domain AMES_3501 PF00486 Transcriptional regulatory protein, C terminal AMES_3502 PF00512 His Kinase A (phospho-acceptor) domain AMES_3502 PF00989 PAS fold AMES_3502 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_3502 PF16736 Single Cache-like AMES_3505 PF00005 ABC transporter AMES_3505 PF02687 FtsX-like permease family AMES_3505 PF12704 MacB-like periplasmic core domain AMES_3506 PF02687 FtsX-like permease family AMES_3506 PF00005 ABC transporter AMES_3506 PF12704 MacB-like periplasmic core domain AMES_3509 PF00083 Sugar (and other) transporter AMES_3510 PF00561 alpha/beta hydrolase fold AMES_3512 PF07730 Histidine kinase AMES_3513 PF00072 Response regulator receiver domain AMES_3513 PF00196 Bacterial regulatory proteins, luxR family AMES_3514 PF00144 Beta-lactamase AMES_3518 PF07730 Histidine kinase AMES_3524 PF14525 AraC-binding-like domain AMES_3524 PF12833 Helix-turn-helix domain AMES_3526 PF00106 short chain dehydrogenase AMES_3527 PF00106 short chain dehydrogenase AMES_3538 PF00067 Cytochrome P450 AMES_3541 PF00072 Response regulator receiver domain AMES_3541 PF00486 Transcriptional regulatory protein, C terminal AMES_3542 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_3542 PF00512 His Kinase A (phospho-acceptor) domain AMES_3542 PF00672 HAMP domain AMES_3546 PF01522 Polysaccharide deacetylase AMES_3551 PF03705 CheR methyltransferase, all-alpha domain AMES_3551 PF01739 CheR methyltransferase, SAM binding domain AMES_3551 PF01339 CheB methylesterase AMES_3551 PF08448 PAS fold AMES_3552 PF01339 CheB methylesterase AMES_3553 PF01494 FAD binding domain AMES_3559 PF00484 Carbonic anhydrase AMES_3563 PF07859 alpha/beta hydrolase fold AMES_3568 PF00106 short chain dehydrogenase AMES_3569 PF00400 WD domain, G-beta repeat AMES_3569 PF12894 Anaphase-promoting complex subunit 4 WD40 domain AMES_3572 PF09278 MerR, DNA binding AMES_3572 PF00376 MerR family regulatory protein AMES_3574 PF04542 Sigma-70 region 2 AMES_3574 PF08281 Sigma-70, region 4 AMES_3574 PF12680 SnoaL-like domain AMES_3579 PF01471 Putative peptidoglycan binding domain AMES_3579 PF08291 Peptidase M15 AMES_3581 PF03704 Bacterial transcriptional activator domain AMES_3581 PF00931 NB-ARC domain AMES_3581 PF00486 Transcriptional regulatory protein, C terminal AMES_3582 PF00196 Bacterial regulatory proteins, luxR family AMES_3582 PF00072 Response regulator receiver domain AMES_3583 PF01648 4'-phosphopantetheinyl transferase superfamily AMES_3584 PF02770 Acyl-CoA dehydrogenase, middle domain AMES_3584 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_3584 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_3587 PF00550 Phosphopantetheine attachment site AMES_3588 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMES_3588 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMES_3592 PF13732 Domain of unknown function (DUF4162) AMES_3592 PF00005 ABC transporter AMES_3594 PF02543 Carbamoyltransferase N-terminus AMES_3594 PF16861 Carbamoyltransferase C-terminus AMES_3600 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMES_3600 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMES_3601 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMES_3601 PF00941 FAD binding domain in molybdopterin dehydrogenase AMES_3602 PF10518 TAT (twin-arginine translocation) pathway signal sequence AMES_3602 PF00111 2Fe-2S iron-sulfur cluster binding domain AMES_3602 PF01799 [2Fe-2S] binding domain AMES_3604 PF17801 Alpha galactosidase C-terminal beta sandwich domain AMES_3604 PF16499 Alpha galactosidase A AMES_3609 PF04075 F420H(2)-dependent quinone reductase AMES_3611 PF00440 Bacterial regulatory proteins, tetR family AMES_3615 PF00144 Beta-lactamase AMES_3618 PF03466 LysR substrate binding domain AMES_3618 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMES_3625 PF08990 Erythronolide synthase docking AMES_3625 PF00698 Acyl transferase domain AMES_3625 PF08240 Alcohol dehydrogenase GroES-like domain AMES_3625 PF02801 Beta-ketoacyl synthase, C-terminal domain AMES_3625 PF00109 Beta-ketoacyl synthase, N-terminal domain AMES_3625 PF08659 KR domain AMES_3625 PF00550 Phosphopantetheine attachment site AMES_3625 PF14765 Polyketide synthase dehydratase AMES_3625 PF16197 Ketoacyl-synthetase C-terminal extension AMES_3631 PF00561 alpha/beta hydrolase fold AMES_3632 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMES_3632 PF03466 LysR substrate binding domain AMES_3637 PF04616 Glycosyl hydrolases family 43 AMES_3640 PF16197 Ketoacyl-synthetase C-terminal extension AMES_3640 PF00698 Acyl transferase domain AMES_3640 PF00668 Condensation domain AMES_3640 PF00109 Beta-ketoacyl synthase, N-terminal domain AMES_3640 PF00550 Phosphopantetheine attachment site AMES_3640 PF02801 Beta-ketoacyl synthase, C-terminal domain AMES_3641 PF00501 AMP-binding enzyme AMES_3641 PF13193 AMP-binding enzyme C-terminal domain AMES_3641 PF00668 Condensation domain AMES_3641 PF00550 Phosphopantetheine attachment site AMES_3641 PF00975 Thioesterase domain AMES_3643 PF00550 Phosphopantetheine attachment site AMES_3643 PF07993 Male sterility protein AMES_3643 PF13193 AMP-binding enzyme C-terminal domain AMES_3643 PF00668 Condensation domain AMES_3643 PF00501 AMP-binding enzyme AMES_3644 PF00550 Phosphopantetheine attachment site AMES_3644 PF00668 Condensation domain AMES_3644 PF13193 AMP-binding enzyme C-terminal domain AMES_3644 PF00501 AMP-binding enzyme AMES_3649 PF00512 His Kinase A (phospho-acceptor) domain AMES_3649 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_3649 PF00672 HAMP domain AMES_3650 PF00486 Transcriptional regulatory protein, C terminal AMES_3650 PF00072 Response regulator receiver domain AMES_3652 PF00072 Response regulator receiver domain AMES_3652 PF00196 Bacterial regulatory proteins, luxR family AMES_3653 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_3653 PF07730 Histidine kinase AMES_3653 PF05231 MASE1 AMES_3655 PF01494 FAD binding domain AMES_3658 PF00872 Transposase, Mutator family AMES_3661 PF00440 Bacterial regulatory proteins, tetR family AMES_3663 PF01037 Lrp/AsnC ligand binding domain AMES_3665 PF00550 Phosphopantetheine attachment site AMES_3665 PF08659 KR domain AMES_3665 PF02801 Beta-ketoacyl synthase, C-terminal domain AMES_3665 PF16197 Ketoacyl-synthetase C-terminal extension AMES_3665 PF00109 Beta-ketoacyl synthase, N-terminal domain AMES_3665 PF14765 Polyketide synthase dehydratase AMES_3665 PF00698 Acyl transferase domain AMES_3665 PF08240 Alcohol dehydrogenase GroES-like domain AMES_3666 PF07859 alpha/beta hydrolase fold AMES_3669 PF02929 Beta galactosidase small chain AMES_3669 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMES_3669 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMES_3669 PF00703 Glycosyl hydrolases family 2 AMES_3669 PF16353 Domain of unknown function(DUF4981) AMES_3670 PF00041 Fibronectin type III domain AMES_3670 PF00704 Glycosyl hydrolases family 18 AMES_3674 PF07690 Major Facilitator Superfamily AMES_3676 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMES_3676 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMES_3678 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMES_3678 PF00941 FAD binding domain in molybdopterin dehydrogenase AMES_3679 PF00111 2Fe-2S iron-sulfur cluster binding domain AMES_3679 PF10518 TAT (twin-arginine translocation) pathway signal sequence AMES_3679 PF01799 [2Fe-2S] binding domain AMES_3680 PF07690 Major Facilitator Superfamily AMES_3681 PF08240 Alcohol dehydrogenase GroES-like domain AMES_3681 PF13823 Alcohol dehydrogenase GroES-associated AMES_3681 PF00107 Zinc-binding dehydrogenase AMES_3689 PF01183 Glycosyl hydrolases family 25 AMES_3692 PF03600 Citrate transporter AMES_3693 PF10503 Esterase PHB depolymerase AMES_3694 PF00480 ROK family AMES_3694 PF01047 MarR family AMES_3696 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMES_3697 PF00528 Binding-protein-dependent transport system inner membrane component AMES_3698 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMES_3698 PF00005 ABC transporter AMES_3699 PF00005 ABC transporter AMES_3699 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMES_3701 PF00356 Bacterial regulatory proteins, lacI family AMES_3702 PF02156 Glycosyl hydrolase family 26 AMES_3704 PF00480 ROK family AMES_3705 PF16874 Glycosyl hydrolase family 36 C-terminal domain AMES_3705 PF16875 Glycosyl hydrolase family 36 N-terminal domain AMES_3706 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_3706 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AMES_3707 PF12833 Helix-turn-helix domain AMES_3707 PF12852 Cupin AMES_3709 PF01494 FAD binding domain AMES_3719 PF03330 Lytic transglycolase AMES_3721 PF00486 Transcriptional regulatory protein, C terminal AMES_3721 PF00072 Response regulator receiver domain AMES_3722 PF00672 HAMP domain AMES_3722 PF00512 His Kinase A (phospho-acceptor) domain AMES_3722 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_3723 PF01757 Acyltransferase family AMES_3729 PF08386 TAP-like protein AMES_3729 PF00561 alpha/beta hydrolase fold AMES_3730 PF08241 Methyltransferase domain AMES_3732 PF01022 Bacterial regulatory protein, arsR family AMES_3736 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal AMES_3736 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AMES_3739 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMES_3740 PF00708 Acylphosphatase AMES_3740 PF07503 HypF finger AMES_3740 PF17788 HypF Kae1-like domain AMES_3740 PF01300 Telomere recombination AMES_3741 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AMES_3742 PF00586 AIR synthase related protein, N-terminal domain AMES_3742 PF02769 AIR synthase related protein, C-terminal domain AMES_3743 PF01924 Hydrogenase formation hypA family AMES_3744 PF01455 HupF/HypC family AMES_3750 PF00374 Nickel-dependent hydrogenase AMES_3751 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AMES_3751 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal AMES_3752 PF13580 SIS domain AMES_3754 PF13580 SIS domain AMES_3761 PF03704 Bacterial transcriptional activator domain AMES_3761 PF00931 NB-ARC domain AMES_3761 PF00486 Transcriptional regulatory protein, C terminal AMES_3762 PF00561 alpha/beta hydrolase fold AMES_3763 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMES_3763 PF00378 Enoyl-CoA hydratase/isomerase AMES_3763 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMES_3764 PF01638 HxlR-like helix-turn-helix AMES_3768 PF00440 Bacterial regulatory proteins, tetR family AMES_3769 PF16197 Ketoacyl-synthetase C-terminal extension AMES_3769 PF00109 Beta-ketoacyl synthase, N-terminal domain AMES_3769 PF08240 Alcohol dehydrogenase GroES-like domain AMES_3769 PF14765 Polyketide synthase dehydratase AMES_3769 PF02801 Beta-ketoacyl synthase, C-terminal domain AMES_3769 PF00550 Phosphopantetheine attachment site AMES_3769 PF00698 Acyl transferase domain AMES_3769 PF08659 KR domain AMES_3771 PF00296 Luciferase-like monooxygenase AMES_3779 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMES_3779 PF00005 ABC transporter AMES_3780 PF00005 ABC transporter AMES_3781 PF00378 Enoyl-CoA hydratase/isomerase AMES_3782 PF02770 Acyl-CoA dehydrogenase, middle domain AMES_3782 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_3782 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_3783 PF13193 AMP-binding enzyme C-terminal domain AMES_3783 PF00501 AMP-binding enzyme AMES_3784 PF02551 Acyl-CoA thioesterase AMES_3786 PF00378 Enoyl-CoA hydratase/isomerase AMES_3787 PF02770 Acyl-CoA dehydrogenase, middle domain AMES_3787 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_3787 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_3788 PF00171 Aldehyde dehydrogenase family AMES_3790 PF02515 CoA-transferase family III AMES_3791 PF02803 Thiolase, C-terminal domain AMES_3791 PF00108 Thiolase, N-terminal domain AMES_3792 PF03060 Nitronate monooxygenase AMES_3793 PF00753 Metallo-beta-lactamase superfamily AMES_3794 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMES_3794 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMES_3795 PF00171 Aldehyde dehydrogenase family AMES_3803 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_3803 PF02770 Acyl-CoA dehydrogenase, middle domain AMES_3803 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_3807 PF00108 Thiolase, N-terminal domain AMES_3807 PF02803 Thiolase, C-terminal domain AMES_3808 PF00106 short chain dehydrogenase AMES_3810 PF00108 Thiolase, N-terminal domain AMES_3810 PF02803 Thiolase, C-terminal domain AMES_3811 PF00378 Enoyl-CoA hydratase/isomerase AMES_3813 PF00232 Glycosyl hydrolase family 1 AMES_3814 PF00106 short chain dehydrogenase AMES_3817 PF00378 Enoyl-CoA hydratase/isomerase AMES_3818 PF00378 Enoyl-CoA hydratase/isomerase AMES_3819 PF02770 Acyl-CoA dehydrogenase, middle domain AMES_3819 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_3819 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_3820 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_3820 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_3820 PF02770 Acyl-CoA dehydrogenase, middle domain AMES_3821 PF13193 AMP-binding enzyme C-terminal domain AMES_3821 PF00501 AMP-binding enzyme AMES_3825 PF07729 FCD domain AMES_3825 PF00392 Bacterial regulatory proteins, gntR family AMES_3826 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_3826 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_3826 PF02770 Acyl-CoA dehydrogenase, middle domain AMES_3829 PF05893 Acyl-CoA reductase (LuxC) AMES_3830 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_3830 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_3830 PF02770 Acyl-CoA dehydrogenase, middle domain AMES_3831 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_3831 PF02770 Acyl-CoA dehydrogenase, middle domain AMES_3831 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_3832 PF00378 Enoyl-CoA hydratase/isomerase AMES_3833 PF07702 UTRA domain AMES_3833 PF00392 Bacterial regulatory proteins, gntR family AMES_3834 PF00106 short chain dehydrogenase AMES_3835 PF00809 Pterin binding enzyme AMES_3836 PF00501 AMP-binding enzyme AMES_3836 PF13193 AMP-binding enzyme C-terminal domain AMES_3839 PF12697 Alpha/beta hydrolase family AMES_3841 PF00440 Bacterial regulatory proteins, tetR family AMES_3842 PF00890 FAD binding domain AMES_3843 PF02585 GlcNAc-PI de-N-acetylase AMES_3844 PF00931 NB-ARC domain AMES_3844 PF00486 Transcriptional regulatory protein, C terminal AMES_3844 PF03704 Bacterial transcriptional activator domain AMES_3848 PF00970 Oxidoreductase FAD-binding domain AMES_3848 PF00042 Globin AMES_3848 PF00175 Oxidoreductase NAD-binding domain AMES_3849 PF00480 ROK family AMES_3850 PF07350 Protein of unknown function (DUF1479) AMES_3851 PF07687 Peptidase dimerisation domain AMES_3851 PF01546 Peptidase family M20/M25/M40 AMES_3853 PF13520 Amino acid permease AMES_3854 PF00723 Glycosyl hydrolases family 15 AMES_3855 PF07690 Major Facilitator Superfamily AMES_3857 PF00072 Response regulator receiver domain AMES_3857 PF00196 Bacterial regulatory proteins, luxR family AMES_3863 PF13191 AAA ATPase domain AMES_3863 PF00069 Protein kinase domain AMES_3864 PF01594 AI-2E family transporter AMES_3866 PF07995 Glucose / Sorbosone dehydrogenase AMES_3867 PF02056 Family 4 glycosyl hydrolase AMES_3867 PF11975 Family 4 glycosyl hydrolase C-terminal domain AMES_3868 PF00528 Binding-protein-dependent transport system inner membrane component AMES_3869 PF00528 Binding-protein-dependent transport system inner membrane component AMES_3872 PF08220 DeoR-like helix-turn-helix domain AMES_3872 PF00455 DeoR C terminal sensor domain AMES_3873 PF01380 SIS domain AMES_3876 PF00294 pfkB family carbohydrate kinase AMES_3877 PF01116 Fructose-bisphosphate aldolase class-II AMES_3880 PF00067 Cytochrome P450 AMES_3881 PF16197 Ketoacyl-synthetase C-terminal extension AMES_3881 PF00109 Beta-ketoacyl synthase, N-terminal domain AMES_3881 PF08659 KR domain AMES_3881 PF00698 Acyl transferase domain AMES_3881 PF00550 Phosphopantetheine attachment site AMES_3881 PF14765 Polyketide synthase dehydratase AMES_3881 PF02801 Beta-ketoacyl synthase, C-terminal domain AMES_3883 PF08240 Alcohol dehydrogenase GroES-like domain AMES_3883 PF14765 Polyketide synthase dehydratase AMES_3883 PF00109 Beta-ketoacyl synthase, N-terminal domain AMES_3883 PF08990 Erythronolide synthase docking AMES_3883 PF00550 Phosphopantetheine attachment site AMES_3883 PF09277 Erythronolide synthase, docking AMES_3883 PF16197 Ketoacyl-synthetase C-terminal extension AMES_3883 PF00698 Acyl transferase domain AMES_3883 PF02801 Beta-ketoacyl synthase, C-terminal domain AMES_3883 PF08659 KR domain AMES_3884 PF12680 SnoaL-like domain AMES_3884 PF08281 Sigma-70, region 4 AMES_3884 PF04542 Sigma-70 region 2 AMES_3885 PF00553 Cellulose binding domain AMES_3885 PF00942 Cellulose binding domain AMES_3885 PF00041 Fibronectin type III domain AMES_3885 PF00759 Glycosyl hydrolase family 9 AMES_3889 PF06441 Epoxide hydrolase N terminus AMES_3891 PF02911 Formyl transferase, C-terminal domain AMES_3891 PF00378 Enoyl-CoA hydratase/isomerase AMES_3891 PF00551 Formyl transferase AMES_3893 PF03704 Bacterial transcriptional activator domain AMES_3893 PF00931 NB-ARC domain AMES_3893 PF00486 Transcriptional regulatory protein, C terminal AMES_3894 PF00005 ABC transporter AMES_3894 PF00664 ABC transporter transmembrane region AMES_3898 PF00376 MerR family regulatory protein AMES_3898 PF09278 MerR, DNA binding AMES_3899 PF00501 AMP-binding enzyme AMES_3899 PF13193 AMP-binding enzyme C-terminal domain AMES_3903 PF00106 short chain dehydrogenase AMES_3904 PF13378 Enolase C-terminal domain-like AMES_3904 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMES_3905 PF00528 Binding-protein-dependent transport system inner membrane component AMES_3906 PF00528 Binding-protein-dependent transport system inner membrane component AMES_3907 PF01547 Bacterial extracellular solute-binding protein AMES_3908 PF00392 Bacterial regulatory proteins, gntR family AMES_3908 PF07729 FCD domain AMES_3910 PF03033 Glycosyltransferase family 28 N-terminal domain AMES_3913 PF00067 Cytochrome P450 AMES_3914 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AMES_3915 PF13193 AMP-binding enzyme C-terminal domain AMES_3915 PF16197 Ketoacyl-synthetase C-terminal extension AMES_3915 PF00668 Condensation domain AMES_3915 PF00501 AMP-binding enzyme AMES_3915 PF00109 Beta-ketoacyl synthase, N-terminal domain AMES_3915 PF02801 Beta-ketoacyl synthase, C-terminal domain AMES_3915 PF08659 KR domain AMES_3915 PF00550 Phosphopantetheine attachment site AMES_3915 PF14765 Polyketide synthase dehydratase AMES_3916 PF00501 AMP-binding enzyme AMES_3916 PF00668 Condensation domain AMES_3916 PF00550 Phosphopantetheine attachment site AMES_3916 PF00975 Thioesterase domain AMES_3916 PF13193 AMP-binding enzyme C-terminal domain AMES_3918 PF00440 Bacterial regulatory proteins, tetR family AMES_3924 PF01494 FAD binding domain AMES_3926 PF00480 ROK family AMES_3926 PF01325 Iron dependent repressor, N-terminal DNA binding domain AMES_3927 PF01047 MarR family AMES_3927 PF00480 ROK family AMES_3928 PF00005 ABC transporter AMES_3929 PF02653 Branched-chain amino acid transport system / permease component AMES_3931 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMES_3931 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMES_3933 PF00107 Zinc-binding dehydrogenase AMES_3933 PF08240 Alcohol dehydrogenase GroES-like domain AMES_3934 PF00440 Bacterial regulatory proteins, tetR family AMES_3942 PF00440 Bacterial regulatory proteins, tetR family AMES_3942 PF16859 Tetracyclin repressor-like, C-terminal domain AMES_3943 PF01341 Glycosyl hydrolases family 6 AMES_3943 PF00553 Cellulose binding domain AMES_3945 PF00331 Glycosyl hydrolase family 10 AMES_3945 PF00652 Ricin-type beta-trefoil lectin domain AMES_3946 PF16483 Beta-1,3-glucanase AMES_3946 PF00652 Ricin-type beta-trefoil lectin domain AMES_3947 PF00331 Glycosyl hydrolase family 10 AMES_3947 PF00652 Ricin-type beta-trefoil lectin domain AMES_3948 PF00107 Zinc-binding dehydrogenase AMES_3948 PF08240 Alcohol dehydrogenase GroES-like domain AMES_3949 PF00440 Bacterial regulatory proteins, tetR family AMES_3949 PF17926 Tetracyclin repressor-like, C-terminal domain AMES_3950 PF13193 AMP-binding enzyme C-terminal domain AMES_3950 PF00501 AMP-binding enzyme AMES_3951 PF13492 GAF domain AMES_3951 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_3951 PF07730 Histidine kinase AMES_3951 PF13185 GAF domain AMES_3952 PF00083 Sugar (and other) transporter AMES_3953 PF07519 Tannase and feruloyl esterase AMES_3954 PF14310 Fibronectin type III-like domain AMES_3954 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMES_3954 PF00933 Glycosyl hydrolase family 3 N terminal domain AMES_3957 PF00652 Ricin-type beta-trefoil lectin domain AMES_3957 PF00331 Glycosyl hydrolase family 10 AMES_3958 PF07905 Purine catabolism regulatory protein-like family AMES_3958 PF13556 PucR C-terminal helix-turn-helix domain AMES_3958 PF17853 GGDEF-like domain AMES_3959 PF00550 Phosphopantetheine attachment site AMES_3960 PF02801 Beta-ketoacyl synthase, C-terminal domain AMES_3960 PF00109 Beta-ketoacyl synthase, N-terminal domain AMES_3961 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMES_3961 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMES_3962 PF00535 Glycosyl transferase family 2 AMES_3963 PF00067 Cytochrome P450 AMES_3964 PF13193 AMP-binding enzyme C-terminal domain AMES_3964 PF00501 AMP-binding enzyme AMES_3966 PF00486 Transcriptional regulatory protein, C terminal AMES_3966 PF03704 Bacterial transcriptional activator domain AMES_3967 PF03466 LysR substrate binding domain AMES_3967 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMES_3972 PF01047 MarR family AMES_3973 PF00486 Transcriptional regulatory protein, C terminal AMES_3973 PF00931 NB-ARC domain AMES_3973 PF03704 Bacterial transcriptional activator domain AMES_3974 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMES_3974 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMES_3975 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMES_3975 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMES_3977 PF00196 Bacterial regulatory proteins, luxR family AMES_3977 PF00072 Response regulator receiver domain AMES_3979 PF12704 MacB-like periplasmic core domain AMES_3979 PF02687 FtsX-like permease family AMES_3979 PF00005 ABC transporter AMES_3985 PF00291 Pyridoxal-phosphate dependent enzyme AMES_3986 PF00501 AMP-binding enzyme AMES_3986 PF13193 AMP-binding enzyme C-terminal domain AMES_3986 PF00668 Condensation domain AMES_3986 PF13193 AMP-binding enzyme C-terminal domain AMES_3986 PF00550 Phosphopantetheine attachment site AMES_3986 PF00668 Condensation domain AMES_3986 PF00501 AMP-binding enzyme AMES_3986 PF00550 Phosphopantetheine attachment site AMES_3988 PF03621 MbtH-like protein AMES_3990 PF00005 ABC transporter AMES_3990 PF13732 Domain of unknown function (DUF4162) AMES_3991 PF00291 Pyridoxal-phosphate dependent enzyme AMES_3993 PF02655 ATP-grasp domain AMES_3996 PF02801 Beta-ketoacyl synthase, C-terminal domain AMES_3996 PF00109 Beta-ketoacyl synthase, N-terminal domain AMES_3997 PF00550 Phosphopantetheine attachment site AMES_3998 PF00486 Transcriptional regulatory protein, C terminal AMES_3998 PF00931 NB-ARC domain AMES_3998 PF03704 Bacterial transcriptional activator domain AMES_3999 PF00137 ATP synthase subunit C AMES_4003 PF10503 Esterase PHB depolymerase AMES_4004 PF00672 HAMP domain AMES_4004 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_4004 PF00512 His Kinase A (phospho-acceptor) domain AMES_4005 PF00072 Response regulator receiver domain AMES_4005 PF00486 Transcriptional regulatory protein, C terminal AMES_4006 PF00144 Beta-lactamase AMES_4007 PF00459 Inositol monophosphatase family AMES_4008 PF03466 LysR substrate binding domain AMES_4008 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMES_4011 PF00083 Sugar (and other) transporter AMES_4012 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMES_4012 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMES_4015 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_4015 PF02770 Acyl-CoA dehydrogenase, middle domain AMES_4015 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_4017 PF00501 AMP-binding enzyme AMES_4017 PF00501 AMP-binding enzyme AMES_4017 PF00668 Condensation domain AMES_4017 PF00668 Condensation domain AMES_4017 PF00550 Phosphopantetheine attachment site AMES_4017 PF13193 AMP-binding enzyme C-terminal domain AMES_4017 PF13193 AMP-binding enzyme C-terminal domain AMES_4017 PF00550 Phosphopantetheine attachment site AMES_4018 PF13193 AMP-binding enzyme C-terminal domain AMES_4018 PF00501 AMP-binding enzyme AMES_4018 PF00668 Condensation domain AMES_4018 PF00668 Condensation domain AMES_4018 PF13193 AMP-binding enzyme C-terminal domain AMES_4018 PF00501 AMP-binding enzyme AMES_4018 PF00550 Phosphopantetheine attachment site AMES_4018 PF00550 Phosphopantetheine attachment site AMES_4019 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMES_4019 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMES_4021 PF01593 Flavin containing amine oxidoreductase AMES_4022 PF01593 Flavin containing amine oxidoreductase AMES_4023 PF01209 ubiE/COQ5 methyltransferase family AMES_4027 PF01593 Flavin containing amine oxidoreductase AMES_4031 PF01593 Flavin containing amine oxidoreductase AMES_4037 PF00528 Binding-protein-dependent transport system inner membrane component AMES_4038 PF00528 Binding-protein-dependent transport system inner membrane component AMES_4040 PF00356 Bacterial regulatory proteins, lacI family AMES_4044 PF00704 Glycosyl hydrolases family 18 AMES_4044 PF00041 Fibronectin type III domain AMES_4044 PF00553 Cellulose binding domain AMES_4046 PF01043 SecA preprotein cross-linking domain AMES_4046 PF07516 SecA Wing and Scaffold domain AMES_4046 PF07517 SecA DEAD-like domain AMES_4046 PF02810 SEC-C motif AMES_4049 PF00150 Cellulase (glycosyl hydrolase family 5) AMES_4049 PF00553 Cellulose binding domain AMES_4052 PF00561 alpha/beta hydrolase fold AMES_4055 PF00296 Luciferase-like monooxygenase AMES_4057 PF00141 Peroxidase AMES_4058 PF01475 Ferric uptake regulator family AMES_4059 PF00303 Thymidylate synthase AMES_4060 PF00186 Dihydrofolate reductase AMES_4061 PF05199 GMC oxidoreductase AMES_4061 PF00732 GMC oxidoreductase AMES_4062 PF00171 Aldehyde dehydrogenase family AMES_4063 PF13091 PLD-like domain AMES_4067 PF00355 Rieske [2Fe-2S] domain AMES_4069 PF03405 Fatty acid desaturase AMES_4070 PF07477 Glycosyl hydrolase family 67 C-terminus AMES_4070 PF03648 Glycosyl hydrolase family 67 N-terminus AMES_4070 PF07488 Glycosyl hydrolase family 67 middle domain AMES_4073 PF00106 short chain dehydrogenase AMES_4082 PF00072 Response regulator receiver domain AMES_4082 PF01339 CheB methylesterase AMES_4083 PF01339 CheB methylesterase AMES_4083 PF00072 Response regulator receiver domain AMES_4085 PF01739 CheR methyltransferase, SAM binding domain AMES_4085 PF03705 CheR methyltransferase, all-alpha domain AMES_4085 PF01339 CheB methylesterase AMES_4085 PF08448 PAS fold AMES_4087 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMES_4096 PF07690 Major Facilitator Superfamily AMES_4099 PF04978 Protein of unknown function (DUF664) AMES_4100 PF04679 ATP dependent DNA ligase C terminal region AMES_4100 PF01068 ATP dependent DNA ligase domain AMES_4105 PF07683 Cobalamin synthesis protein cobW C-terminal domain AMES_4105 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMES_4106 PF02898 Nitric oxide synthase, oxygenase domain AMES_4108 PF07690 Major Facilitator Superfamily AMES_4110 PF03601 Conserved hypothetical protein 698 AMES_4111 PF03466 LysR substrate binding domain AMES_4111 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMES_4112 PF03466 LysR substrate binding domain AMES_4112 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMES_4116 PF00246 Zinc carboxypeptidase AMES_4118 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMES_4118 PF02785 Biotin carboxylase C-terminal domain AMES_4118 PF00289 Biotin carboxylase, N-terminal domain AMES_4125 PF00392 Bacterial regulatory proteins, gntR family AMES_4125 PF00155 Aminotransferase class I and II AMES_4126 PF07690 Major Facilitator Superfamily AMES_4128 PF02577 Bifunctional nuclease AMES_4130 PF04542 Sigma-70 region 2 AMES_4130 PF08281 Sigma-70, region 4 AMES_4130 PF12680 SnoaL-like domain AMES_4131 PF00501 AMP-binding enzyme AMES_4135 PF05958 tRNA (Uracil-5-)-methyltransferase AMES_4135 PF01938 TRAM domain AMES_4139 PF04679 ATP dependent DNA ligase C terminal region AMES_4139 PF01068 ATP dependent DNA ligase domain AMES_4139 PF13298 DNA polymerase Ligase (LigD) AMES_4140 PF00294 pfkB family carbohydrate kinase AMES_4141 PF16124 RecQ zinc-binding AMES_4141 PF00570 HRDC domain AMES_4141 PF00270 DEAD/DEAH box helicase AMES_4141 PF09382 RQC domain AMES_4141 PF00271 Helicase conserved C-terminal domain AMES_4147 PF01068 ATP dependent DNA ligase domain AMES_4147 PF13298 DNA polymerase Ligase (LigD) AMES_4147 PF04679 ATP dependent DNA ligase C terminal region AMES_4151 PF16859 Tetracyclin repressor-like, C-terminal domain AMES_4151 PF00440 Bacterial regulatory proteins, tetR family AMES_4152 PF12146 Serine aminopeptidase, S33 AMES_4160 PF02146 Sir2 family AMES_4162 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMES_4162 PF13192 Thioredoxin domain AMES_4163 PF01381 Helix-turn-helix AMES_4166 PF03143 Elongation factor Tu C-terminal domain AMES_4166 PF00009 Elongation factor Tu GTP binding domain AMES_4166 PF03144 Elongation factor Tu domain 2 AMES_4169 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation AMES_4169 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMES_4170 PF00682 HMGL-like AMES_4170 PF07836 DmpG-like communication domain AMES_4172 PF01494 FAD binding domain AMES_4173 PF00440 Bacterial regulatory proteins, tetR family AMES_4173 PF17754 MftR C-terminal domain AMES_4175 PF01425 Amidase AMES_4176 PF00144 Beta-lactamase AMES_4178 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMES_4178 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AMES_4180 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA AMES_4181 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMES_4181 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AMES_4182 PF04545 Sigma-70, region 4 AMES_4182 PF04542 Sigma-70 region 2 AMES_4183 PF13649 Methyltransferase domain AMES_4183 PF17827 PrmC N-terminal domain AMES_4186 PF01037 Lrp/AsnC ligand binding domain AMES_4187 PF00202 Aminotransferase class-III AMES_4188 PF00067 Cytochrome P450 AMES_4190 PF00072 Response regulator receiver domain AMES_4190 PF01339 CheB methylesterase AMES_4193 PF00069 Protein kinase domain AMES_4193 PF03793 PASTA domain AMES_4195 PF00183 Hsp90 protein AMES_4197 PF00127 Copper binding proteins, plastocyanin/azurin family AMES_4204 PF05139 Erythromycin esterase AMES_4204 PF00156 Phosphoribosyl transferase domain AMES_4214 PF00171 Aldehyde dehydrogenase family AMES_4218 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMES_4218 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMES_4218 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMES_4220 PF00106 short chain dehydrogenase AMES_4221 PF00294 pfkB family carbohydrate kinase AMES_4221 PF01467 Cytidylyltransferase-like AMES_4222 PF13580 SIS domain AMES_4223 PF16861 Carbamoyltransferase C-terminus AMES_4223 PF02543 Carbamoyltransferase N-terminus AMES_4224 PF01370 NAD dependent epimerase/dehydratase family AMES_4227 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase AMES_4227 PF00535 Glycosyl transferase family 2 AMES_4228 PF00534 Glycosyl transferases group 1 AMES_4228 PF13439 Glycosyltransferase Family 4 AMES_4231 PF01384 Phosphate transporter family AMES_4232 PF08240 Alcohol dehydrogenase GroES-like domain AMES_4232 PF13823 Alcohol dehydrogenase GroES-associated AMES_4232 PF00107 Zinc-binding dehydrogenase AMES_4233 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMES_4233 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal AMES_4233 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AMES_4237 PF03631 Virulence factor BrkB AMES_4242 PF01266 FAD dependent oxidoreductase AMES_4242 PF00355 Rieske [2Fe-2S] domain AMES_4243 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMES_4243 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AMES_4243 PF02142 MGS-like domain AMES_4244 PF17827 PrmC N-terminal domain AMES_4244 PF05175 Methyltransferase small domain AMES_4247 PF04107 Glutamate-cysteine ligase family 2(GCS2) AMES_4249 PF04107 Glutamate-cysteine ligase family 2(GCS2) AMES_4251 PF01276 Orn/Lys/Arg decarboxylase, major domain AMES_4251 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AMES_4253 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AMES_4254 PF00296 Luciferase-like monooxygenase AMES_4255 PF00528 Binding-protein-dependent transport system inner membrane component AMES_4256 PF00005 ABC transporter AMES_4260 PF06441 Epoxide hydrolase N terminus AMES_4262 PF00196 Bacterial regulatory proteins, luxR family AMES_4263 PF01494 FAD binding domain AMES_4264 PF01230 HIT domain AMES_4265 PF17853 GGDEF-like domain AMES_4265 PF05651 Putative sugar diacid recognition AMES_4265 PF13556 PucR C-terminal helix-turn-helix domain AMES_4270 PF02954 Bacterial regulatory protein, Fis family AMES_4272 PF02332 Methane/Phenol/Toluene Hydroxylase AMES_4273 PF00111 2Fe-2S iron-sulfur cluster binding domain AMES_4273 PF00175 Oxidoreductase NAD-binding domain AMES_4273 PF00970 Oxidoreductase FAD-binding domain AMES_4274 PF02332 Methane/Phenol/Toluene Hydroxylase AMES_4275 PF02406 MmoB/DmpM family AMES_4279 PF00118 TCP-1/cpn60 chaperonin family AMES_4282 PF03704 Bacterial transcriptional activator domain AMES_4282 PF00931 NB-ARC domain AMES_4282 PF00486 Transcriptional regulatory protein, C terminal AMES_4283 PF06441 Epoxide hydrolase N terminus AMES_4284 PF00440 Bacterial regulatory proteins, tetR family AMES_4286 PF13409 Glutathione S-transferase, N-terminal domain AMES_4288 PF04264 YceI-like domain AMES_4289 PF00440 Bacterial regulatory proteins, tetR family AMES_4292 PF00528 Binding-protein-dependent transport system inner membrane component AMES_4295 PF00356 Bacterial regulatory proteins, lacI family AMES_4296 PF07691 PA14 domain AMES_4296 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMES_4296 PF14310 Fibronectin type III-like domain AMES_4296 PF00933 Glycosyl hydrolase family 3 N terminal domain AMES_4298 PF00067 Cytochrome P450 AMES_4300 PF00498 FHA domain AMES_4300 PF00563 EAL domain AMES_4300 PF00990 Diguanylate cyclase, GGDEF domain AMES_4303 PF13183 4Fe-4S dicluster domain AMES_4303 PF02665 Nitrate reductase gamma subunit AMES_4303 PF02754 Cysteine-rich domain AMES_4304 PF12401 Protein of unknown function (DUF2662) AMES_4304 PF00498 FHA domain AMES_4305 PF00083 Sugar (and other) transporter AMES_4305 PF07690 Major Facilitator Superfamily AMES_4308 PF08501 Shikimate dehydrogenase substrate binding domain AMES_4308 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AMES_4312 PF00528 Binding-protein-dependent transport system inner membrane component AMES_4313 PF00933 Glycosyl hydrolase family 3 N terminal domain AMES_4322 PF08281 Sigma-70, region 4 AMES_4322 PF04542 Sigma-70 region 2 AMES_4324 PF07730 Histidine kinase AMES_4324 PF13492 GAF domain AMES_4324 PF13185 GAF domain AMES_4324 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_4325 PF00072 Response regulator receiver domain AMES_4325 PF00196 Bacterial regulatory proteins, luxR family AMES_4329 PF14759 Reductase C-terminal AMES_4329 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMES_4330 PF01227 GTP cyclohydrolase I AMES_4333 PF00356 Bacterial regulatory proteins, lacI family AMES_4337 PF00106 short chain dehydrogenase AMES_4338 PF00704 Glycosyl hydrolases family 18 AMES_4338 PF00553 Cellulose binding domain AMES_4338 PF00041 Fibronectin type III domain AMES_4340 PF00768 D-alanyl-D-alanine carboxypeptidase AMES_4340 PF07943 Penicillin-binding protein 5, C-terminal domain AMES_4342 PF00356 Bacterial regulatory proteins, lacI family AMES_4343 PF13407 Periplasmic binding protein domain AMES_4344 PF00005 ABC transporter AMES_4345 PF02653 Branched-chain amino acid transport system / permease component AMES_4346 PF02653 Branched-chain amino acid transport system / permease component AMES_4347 PF06964 Alpha-L-arabinofuranosidase C-terminal domain AMES_4347 PF02018 Carbohydrate binding domain AMES_4348 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMES_4348 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMES_4349 PF00596 Class II Aldolase and Adducin N-terminal domain AMES_4350 PF11762 L-arabinose isomerase C-terminal domain AMES_4350 PF02610 L-arabinose isomerase AMES_4351 PF13407 Periplasmic binding protein domain AMES_4352 PF00005 ABC transporter AMES_4353 PF02653 Branched-chain amino acid transport system / permease component AMES_4355 PF00356 Bacterial regulatory proteins, lacI family AMES_4356 PF00067 Cytochrome P450 AMES_4357 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMES_4357 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMES_4358 PF09339 IclR helix-turn-helix domain AMES_4358 PF01614 Bacterial transcriptional regulator AMES_4359 PF00230 Major intrinsic protein AMES_4360 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMES_4360 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMES_4361 PF01266 FAD dependent oxidoreductase AMES_4361 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AMES_4363 PF00764 Arginosuccinate synthase AMES_4364 PF00698 Acyl transferase domain AMES_4364 PF08240 Alcohol dehydrogenase GroES-like domain AMES_4364 PF08990 Erythronolide synthase docking AMES_4364 PF16197 Ketoacyl-synthetase C-terminal extension AMES_4364 PF00109 Beta-ketoacyl synthase, N-terminal domain AMES_4364 PF02801 Beta-ketoacyl synthase, C-terminal domain AMES_4364 PF08659 KR domain AMES_4364 PF00550 Phosphopantetheine attachment site AMES_4364 PF14765 Polyketide synthase dehydratase AMES_4364 PF09277 Erythronolide synthase, docking AMES_4371 PF00144 Beta-lactamase AMES_4372 PF04030 D-arabinono-1,4-lactone oxidase AMES_4372 PF01565 FAD binding domain AMES_4373 PF00356 Bacterial regulatory proteins, lacI family AMES_4375 PF13416 Bacterial extracellular solute-binding protein AMES_4376 PF00528 Binding-protein-dependent transport system inner membrane component AMES_4377 PF00528 Binding-protein-dependent transport system inner membrane component AMES_4379 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMES_4379 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMES_4380 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMES_4380 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMES_4382 PF00544 Pectate lyase AMES_4383 PF03211 Pectate lyase AMES_4384 PF01095 Pectinesterase AMES_4385 PF04616 Glycosyl hydrolases family 43 AMES_4387 PF00931 NB-ARC domain AMES_4387 PF00486 Transcriptional regulatory protein, C terminal AMES_4387 PF03704 Bacterial transcriptional activator domain AMES_4391 PF00582 Universal stress protein family AMES_4392 PF01478 Type IV leader peptidase family AMES_4392 PF06750 Bacterial Peptidase A24 N-terminal domain AMES_4396 PF00482 Type II secretion system (T2SS), protein F AMES_4397 PF00437 Type II/IV secretion system protein AMES_4398 PF00437 Type II/IV secretion system protein AMES_4399 PF07963 Prokaryotic N-terminal methylation motif AMES_4399 PF08334 Type II secretion system (T2SS), protein G AMES_4404 PF08338 Domain of unknown function (DUF1731) AMES_4404 PF01370 NAD dependent epimerase/dehydratase family AMES_4406 PF07859 alpha/beta hydrolase fold AMES_4407 PF00107 Zinc-binding dehydrogenase AMES_4407 PF08240 Alcohol dehydrogenase GroES-like domain AMES_4408 PF00483 Nucleotidyl transferase AMES_4409 PF13439 Glycosyltransferase Family 4 AMES_4409 PF00534 Glycosyl transferases group 1 AMES_4411 PF01740 STAS domain AMES_4414 PF16990 Carbohydrate binding module (family 35) AMES_4414 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMES_4414 PF00703 Glycosyl hydrolases family 2 AMES_4414 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain AMES_4416 PF13556 PucR C-terminal helix-turn-helix domain AMES_4416 PF17853 GGDEF-like domain AMES_4417 PF00009 Elongation factor Tu GTP binding domain AMES_4417 PF00679 Elongation factor G C-terminus AMES_4417 PF14492 Elongation Factor G, domain II AMES_4417 PF03764 Elongation factor G, domain IV AMES_4417 PF03144 Elongation factor Tu domain 2 AMES_4418 PF00266 Aminotransferase class-V AMES_4421 PF09594 Glycosyltransferase family 87 AMES_4422 PF01494 FAD binding domain AMES_4426 PF07690 Major Facilitator Superfamily AMES_4427 PF16197 Ketoacyl-synthetase C-terminal extension AMES_4427 PF08659 KR domain AMES_4427 PF00550 Phosphopantetheine attachment site AMES_4427 PF14765 Polyketide synthase dehydratase AMES_4427 PF02801 Beta-ketoacyl synthase, C-terminal domain AMES_4427 PF00109 Beta-ketoacyl synthase, N-terminal domain AMES_4427 PF00698 Acyl transferase domain AMES_4428 PF00501 AMP-binding enzyme AMES_4431 PF00106 short chain dehydrogenase AMES_4432 PF03033 Glycosyltransferase family 28 N-terminal domain AMES_4432 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase AMES_4435 PF01068 ATP dependent DNA ligase domain AMES_4435 PF04679 ATP dependent DNA ligase C terminal region AMES_4435 PF13298 DNA polymerase Ligase (LigD) AMES_4436 PF01513 ATP-NAD kinase AMES_4437 PF00743 Flavin-binding monooxygenase-like AMES_4438 PF00106 short chain dehydrogenase AMES_4439 PF00561 alpha/beta hydrolase fold AMES_4440 PF00067 Cytochrome P450 AMES_4442 PF03704 Bacterial transcriptional activator domain AMES_4442 PF00931 NB-ARC domain AMES_4442 PF00486 Transcriptional regulatory protein, C terminal AMES_4443 PF00381 PTS HPr component phosphorylation site AMES_4444 PF02378 Phosphotransferase system, EIIC AMES_4444 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AMES_4445 PF05524 PEP-utilising enzyme, N-terminal AMES_4445 PF00391 PEP-utilising enzyme, mobile domain AMES_4445 PF02896 PEP-utilising enzyme, TIM barrel domain AMES_4445 PF00381 PTS HPr component phosphorylation site AMES_4445 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMES_4446 PF00294 pfkB family carbohydrate kinase AMES_4448 PF05524 PEP-utilising enzyme, N-terminal AMES_4448 PF00391 PEP-utilising enzyme, mobile domain AMES_4448 PF02896 PEP-utilising enzyme, TIM barrel domain AMES_4449 PF00899 ThiF family AMES_4452 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMES_4452 PF14310 Fibronectin type III-like domain AMES_4452 PF00933 Glycosyl hydrolase family 3 N terminal domain AMES_4453 PF00356 Bacterial regulatory proteins, lacI family AMES_4455 PF00528 Binding-protein-dependent transport system inner membrane component AMES_4456 PF00528 Binding-protein-dependent transport system inner membrane component AMES_4458 PF00356 Bacterial regulatory proteins, lacI family AMES_4459 PF00457 Glycosyl hydrolases family 11 AMES_4459 PF01522 Polysaccharide deacetylase AMES_4460 PF00553 Cellulose binding domain AMES_4460 PF00331 Glycosyl hydrolase family 10 AMES_4462 PF00313 'Cold-shock' DNA-binding domain AMES_4471 PF00672 HAMP domain AMES_4471 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_4471 PF00512 His Kinase A (phospho-acceptor) domain AMES_4471 PF01627 Hpt domain AMES_4471 PF00072 Response regulator receiver domain AMES_4471 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMES_4473 PF01699 Sodium/calcium exchanger protein AMES_4474 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMES_4474 PF03466 LysR substrate binding domain AMES_4475 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMES_4475 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMES_4475 PF00205 Thiamine pyrophosphate enzyme, central domain AMES_4480 PF02868 Thermolysin metallopeptidase, alpha-helical domain AMES_4480 PF01447 Thermolysin metallopeptidase, catalytic domain AMES_4480 PF04389 Peptidase family M28 AMES_4482 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMES_4482 PF00703 Glycosyl hydrolases family 2 AMES_4482 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMES_4482 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 AMES_4483 PF00356 Bacterial regulatory proteins, lacI family AMES_4484 PF00005 ABC transporter AMES_4485 PF02653 Branched-chain amino acid transport system / permease component AMES_4486 PF02653 Branched-chain amino acid transport system / permease component AMES_4488 PF05336 L-rhamnose mutarotase AMES_4490 PF00596 Class II Aldolase and Adducin N-terminal domain AMES_4492 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMES_4492 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMES_4493 PF00196 Bacterial regulatory proteins, luxR family AMES_4494 PF07730 Histidine kinase AMES_4494 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_4496 PF00356 Bacterial regulatory proteins, lacI family AMES_4497 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMES_4497 PF16990 Carbohydrate binding module (family 35) AMES_4497 PF00703 Glycosyl hydrolases family 2 AMES_4497 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain AMES_4508 PF00817 impB/mucB/samB family AMES_4508 PF11799 impB/mucB/samB family C-terminal domain AMES_4509 PF04072 Leucine carboxyl methyltransferase AMES_4510 PF11774 Lsr2 AMES_4512 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMES_4512 PF03466 LysR substrate binding domain AMES_4513 PF02634 FdhD/NarQ family AMES_4514 PF00549 CoA-ligase AMES_4514 PF02629 CoA binding domain AMES_4515 PF00549 CoA-ligase AMES_4515 PF08442 ATP-grasp domain AMES_4516 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMES_4516 PF00205 Thiamine pyrophosphate enzyme, central domain AMES_4516 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMES_4517 PF02515 CoA-transferase family III AMES_4518 PF13607 Succinyl-CoA ligase like flavodoxin domain AMES_4518 PF13380 CoA binding domain AMES_4518 PF00583 Acetyltransferase (GNAT) family AMES_4519 PF07690 Major Facilitator Superfamily AMES_4520 PF07729 FCD domain AMES_4520 PF00392 Bacterial regulatory proteins, gntR family AMES_4521 PF02558 Ketopantoate reductase PanE/ApbA AMES_4521 PF08546 Ketopantoate reductase PanE/ApbA C terminal AMES_4522 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMES_4522 PF01568 Molydopterin dinucleotide binding domain AMES_4522 PF00384 Molybdopterin oxidoreductase AMES_4523 PF10531 SLBB domain AMES_4523 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMES_4523 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AMES_4524 PF00384 Molybdopterin oxidoreductase AMES_4524 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMES_4524 PF01568 Molydopterin dinucleotide binding domain AMES_4524 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMES_4525 PF01261 Xylose isomerase-like TIM barrel AMES_4526 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMES_4526 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMES_4527 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMES_4527 PF00205 Thiamine pyrophosphate enzyme, central domain AMES_4527 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMES_4528 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMES_4528 PF00941 FAD binding domain in molybdopterin dehydrogenase AMES_4529 PF00111 2Fe-2S iron-sulfur cluster binding domain AMES_4529 PF01799 [2Fe-2S] binding domain AMES_4530 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMES_4530 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMES_4531 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMES_4532 PF00860 Permease family AMES_4534 PF02595 Glycerate kinase family AMES_4536 PF00723 Glycosyl hydrolases family 15 AMES_4536 PF09137 Glucodextranase, domain N AMES_4539 PF00293 NUDIX domain AMES_4539 PF03099 Biotin/lipoate A/B protein ligase family AMES_4540 PF01494 FAD binding domain AMES_4541 PF00440 Bacterial regulatory proteins, tetR family AMES_4542 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMES_4542 PF16353 Domain of unknown function(DUF4981) AMES_4542 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMES_4542 PF02929 Beta galactosidase small chain AMES_4543 PF00356 Bacterial regulatory proteins, lacI family AMES_4544 PF00324 Amino acid permease AMES_4545 PF04960 Glutaminase AMES_4548 PF00291 Pyridoxal-phosphate dependent enzyme AMES_4549 PF00698 Acyl transferase domain AMES_4549 PF16197 Ketoacyl-synthetase C-terminal extension AMES_4549 PF00109 Beta-ketoacyl synthase, N-terminal domain AMES_4549 PF02801 Beta-ketoacyl synthase, C-terminal domain AMES_4549 PF08659 KR domain AMES_4549 PF00550 Phosphopantetheine attachment site AMES_4550 PF00109 Beta-ketoacyl synthase, N-terminal domain AMES_4550 PF00698 Acyl transferase domain AMES_4550 PF02801 Beta-ketoacyl synthase, C-terminal domain AMES_4550 PF08659 KR domain AMES_4550 PF16197 Ketoacyl-synthetase C-terminal extension AMES_4550 PF00550 Phosphopantetheine attachment site AMES_4550 PF14765 Polyketide synthase dehydratase AMES_4550 PF08240 Alcohol dehydrogenase GroES-like domain AMES_4550 PF00107 Zinc-binding dehydrogenase AMES_4551 PF00550 Phosphopantetheine attachment site AMES_4552 PF12697 Alpha/beta hydrolase family AMES_4555 PF07690 Major Facilitator Superfamily AMES_4557 PF01068 ATP dependent DNA ligase domain AMES_4557 PF04679 ATP dependent DNA ligase C terminal region AMES_4557 PF13298 DNA polymerase Ligase (LigD) AMES_4558 PF02803 Thiolase, C-terminal domain AMES_4558 PF00108 Thiolase, N-terminal domain AMES_4559 PF01638 HxlR-like helix-turn-helix AMES_4560 PF00704 Glycosyl hydrolases family 18 AMES_4560 PF00041 Fibronectin type III domain AMES_4561 PF02719 Polysaccharide biosynthesis protein AMES_4561 PF08485 Polysaccharide biosynthesis protein C-terminal AMES_4564 PF03466 LysR substrate binding domain AMES_4564 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMES_4566 PF02515 CoA-transferase family III AMES_4567 PF02515 CoA-transferase family III AMES_4568 PF00356 Bacterial regulatory proteins, lacI family AMES_4570 PF07687 Peptidase dimerisation domain AMES_4570 PF01546 Peptidase family M20/M25/M40 AMES_4571 PF12697 Alpha/beta hydrolase family AMES_4578 PF00248 Aldo/keto reductase family AMES_4579 PF00296 Luciferase-like monooxygenase AMES_4580 PF02673 Bacitracin resistance protein BacA AMES_4582 PF01432 Peptidase family M3 AMES_4583 PF00574 Clp protease AMES_4584 PF00056 lactate/malate dehydrogenase, NAD binding domain AMES_4584 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AMES_4591 PF17678 Glycosyl hydrolase family 92 N-terminal domain AMES_4591 PF07971 Glycosyl hydrolase family 92 AMES_4592 PF07519 Tannase and feruloyl esterase AMES_4596 PF07687 Peptidase dimerisation domain AMES_4596 PF01546 Peptidase family M20/M25/M40 AMES_4599 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMES_4600 PF00528 Binding-protein-dependent transport system inner membrane component AMES_4602 PF00005 ABC transporter AMES_4602 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMES_4605 PF17676 LD-carboxypeptidase C-terminal domain AMES_4605 PF02016 LD-carboxypeptidase N-terminal domain AMES_4606 PF07676 WD40-like Beta Propeller Repeat AMES_4606 PF00326 Prolyl oligopeptidase family AMES_4613 PF01145 SPFH domain / Band 7 family AMES_4618 PF07690 Major Facilitator Superfamily AMES_4618 PF00083 Sugar (and other) transporter AMES_4620 PF01494 FAD binding domain AMES_4622 PF01022 Bacterial regulatory protein, arsR family AMES_4625 PF00440 Bacterial regulatory proteins, tetR family AMES_4631 PF08281 Sigma-70, region 4 AMES_4631 PF04542 Sigma-70 region 2 AMES_4637 PF00440 Bacterial regulatory proteins, tetR family AMES_4638 PF12833 Helix-turn-helix domain AMES_4638 PF12852 Cupin AMES_4644 PF04542 Sigma-70 region 2 AMES_4644 PF08281 Sigma-70, region 4 AMES_4647 PF00067 Cytochrome P450 AMES_4648 PF13732 Domain of unknown function (DUF4162) AMES_4648 PF00005 ABC transporter AMES_4650 PF00271 Helicase conserved C-terminal domain AMES_4650 PF12419 SNF2 Helicase protein AMES_4650 PF00176 SNF2 family N-terminal domain AMES_4652 PF01494 FAD binding domain AMES_4653 PF00440 Bacterial regulatory proteins, tetR family AMES_4654 PF02770 Acyl-CoA dehydrogenase, middle domain AMES_4654 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_4654 PF18158 Adaptive response protein AidB N-terminal domain AMES_4656 PF00440 Bacterial regulatory proteins, tetR family AMES_4656 PF17925 Tetracyclin repressor-like, C-terminal domain AMES_4658 PF01381 Helix-turn-helix AMES_4658 PF07883 Cupin domain AMES_4663 PF00589 Phage integrase family AMES_4663 PF02899 Phage integrase, N-terminal SAM-like domain AMES_4668 PF00265 Thymidine kinase AMES_4669 PF13397 RNA polymerase-binding protein AMES_4670 PF00293 NUDIX domain AMES_4671 PF02585 GlcNAc-PI de-N-acetylase AMES_4673 PF00535 Glycosyl transferase family 2 AMES_4674 PF00535 Glycosyl transferase family 2 AMES_4674 PF00795 Carbon-nitrogen hydrolase AMES_4675 PF01979 Amidohydrolase family AMES_4676 PF12544 Lysine-2,3-aminomutase AMES_4676 PF04055 Radical SAM superfamily AMES_4679 PF12833 Helix-turn-helix domain AMES_4679 PF01965 DJ-1/PfpI family AMES_4680 PF01638 HxlR-like helix-turn-helix AMES_4684 PF00931 NB-ARC domain AMES_4684 PF03704 Bacterial transcriptional activator domain AMES_4684 PF00486 Transcriptional regulatory protein, C terminal AMES_4686 PF13575 Domain of unknown function (DUF4135) AMES_4686 PF05147 Lanthionine synthetase C-like protein AMES_4688 PF00498 FHA domain AMES_4688 PF03704 Bacterial transcriptional activator domain AMES_4688 PF00486 Transcriptional regulatory protein, C terminal AMES_4689 PF00156 Phosphoribosyl transferase domain AMES_4691 PF06368 Methylaspartate mutase E chain (MutE) AMES_4692 PF01336 OB-fold nucleic acid binding domain AMES_4692 PF00152 tRNA synthetases class II (D, K and N) AMES_4693 PF01645 Conserved region in glutamate synthase AMES_4694 PF13193 AMP-binding enzyme C-terminal domain AMES_4694 PF00501 AMP-binding enzyme AMES_4694 PF00550 Phosphopantetheine attachment site AMES_4694 PF00668 Condensation domain AMES_4696 PF01063 Amino-transferase class IV AMES_4698 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_4698 PF02770 Acyl-CoA dehydrogenase, middle domain AMES_4698 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_4699 PF00196 Bacterial regulatory proteins, luxR family AMES_4700 PF01212 Beta-eliminating lyase AMES_4701 PF00206 Lyase AMES_4701 PF02655 ATP-grasp domain AMES_4702 PF02655 ATP-grasp domain AMES_4702 PF00206 Lyase AMES_4703 PF00291 Pyridoxal-phosphate dependent enzyme AMES_4703 PF00571 CBS domain AMES_4704 PF00975 Thioesterase domain AMES_4706 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMES_4706 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMES_4707 PF02801 Beta-ketoacyl synthase, C-terminal domain AMES_4707 PF00668 Condensation domain AMES_4707 PF00109 Beta-ketoacyl synthase, N-terminal domain AMES_4707 PF00698 Acyl transferase domain AMES_4707 PF16197 Ketoacyl-synthetase C-terminal extension AMES_4707 PF00550 Phosphopantetheine attachment site AMES_4708 PF13193 AMP-binding enzyme C-terminal domain AMES_4708 PF00550 Phosphopantetheine attachment site AMES_4708 PF00501 AMP-binding enzyme AMES_4708 PF00668 Condensation domain AMES_4709 PF03621 MbtH-like protein AMES_4710 PF13193 AMP-binding enzyme C-terminal domain AMES_4710 PF00668 Condensation domain AMES_4710 PF07993 Male sterility protein AMES_4710 PF00550 Phosphopantetheine attachment site AMES_4710 PF00501 AMP-binding enzyme AMES_4711 PF00975 Thioesterase domain AMES_4711 PF00668 Condensation domain AMES_4711 PF00550 Phosphopantetheine attachment site AMES_4711 PF13193 AMP-binding enzyme C-terminal domain AMES_4711 PF00501 AMP-binding enzyme AMES_4714 PF07687 Peptidase dimerisation domain AMES_4714 PF01546 Peptidase family M20/M25/M40 AMES_4716 PF00155 Aminotransferase class I and II AMES_4717 PF00196 Bacterial regulatory proteins, luxR family AMES_4718 PF03466 LysR substrate binding domain AMES_4718 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMES_4719 PF01494 FAD binding domain AMES_4720 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AMES_4720 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMES_4728 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMES_4728 PF13378 Enolase C-terminal domain-like AMES_4729 PF07729 FCD domain AMES_4729 PF00392 Bacterial regulatory proteins, gntR family AMES_4730 PF00528 Binding-protein-dependent transport system inner membrane component AMES_4731 PF00528 Binding-protein-dependent transport system inner membrane component AMES_4732 PF13340 Putative transposase of IS4/5 family (DUF4096) AMES_4734 PF03621 MbtH-like protein AMES_4735 PF13193 AMP-binding enzyme C-terminal domain AMES_4735 PF00550 Phosphopantetheine attachment site AMES_4735 PF00668 Condensation domain AMES_4735 PF00501 AMP-binding enzyme AMES_4735 PF00975 Thioesterase domain AMES_4736 PF00291 Pyridoxal-phosphate dependent enzyme AMES_4737 PF02423 Ornithine cyclodeaminase/mu-crystallin family AMES_4738 PF02310 B12 binding domain AMES_4739 PF06368 Methylaspartate mutase E chain (MutE) AMES_4741 PF00975 Thioesterase domain AMES_4741 PF00550 Phosphopantetheine attachment site AMES_4741 PF00668 Condensation domain AMES_4741 PF13193 AMP-binding enzyme C-terminal domain AMES_4741 PF00501 AMP-binding enzyme AMES_4745 PF00668 Condensation domain AMES_4745 PF00550 Phosphopantetheine attachment site AMES_4745 PF13193 AMP-binding enzyme C-terminal domain AMES_4745 PF00501 AMP-binding enzyme AMES_4746 PF03704 Bacterial transcriptional activator domain AMES_4746 PF00931 NB-ARC domain AMES_4746 PF00486 Transcriptional regulatory protein, C terminal AMES_4748 PF00931 NB-ARC domain AMES_4748 PF00486 Transcriptional regulatory protein, C terminal AMES_4748 PF03704 Bacterial transcriptional activator domain AMES_4750 PF09278 MerR, DNA binding AMES_4750 PF00376 MerR family regulatory protein AMES_4758 PF00652 Ricin-type beta-trefoil lectin domain AMES_4758 PF03664 Glycosyl hydrolase family 62 AMES_4760 PF00067 Cytochrome P450 AMES_4764 PF12706 Beta-lactamase superfamily domain AMES_4767 PF00196 Bacterial regulatory proteins, luxR family AMES_4767 PF00072 Response regulator receiver domain AMES_4768 PF00196 Bacterial regulatory proteins, luxR family AMES_4768 PF00072 Response regulator receiver domain AMES_4770 PF04052 TolB amino-terminal domain AMES_4770 PF07676 WD40-like Beta Propeller Repeat AMES_4786 PF16450 Proteasomal ATPase OB C-terminal domain AMES_4786 PF17758 Proteasomal ATPase OB N-terminal domain AMES_4786 PF00004 ATPase family associated with various cellular activities (AAA) AMES_4791 PF01979 Amidohydrolase family AMES_4792 PF09339 IclR helix-turn-helix domain AMES_4792 PF01614 Bacterial transcriptional regulator AMES_4793 PF02515 CoA-transferase family III AMES_4795 PF04444 Catechol dioxygenase N terminus AMES_4795 PF00775 Dioxygenase AMES_4799 PF02839 Carbohydrate binding domain AMES_4801 PF00005 ABC transporter AMES_4802 PF01494 FAD binding domain AMES_4805 PF00106 short chain dehydrogenase AMES_4807 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMES_4807 PF03466 LysR substrate binding domain AMES_4808 PF02525 Flavodoxin-like fold AMES_4809 PF00440 Bacterial regulatory proteins, tetR family AMES_4813 PF01037 Lrp/AsnC ligand binding domain AMES_4814 PF01321 Creatinase/Prolidase N-terminal domain AMES_4814 PF00557 Metallopeptidase family M24 AMES_4815 PF17668 Acetyltransferase (GNAT) domain AMES_4815 PF13530 Sterol carrier protein domain AMES_4816 PF01367 5'-3' exonuclease, C-terminal SAM fold AMES_4816 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AMES_4817 PF17668 Acetyltransferase (GNAT) domain AMES_4817 PF13530 Sterol carrier protein domain AMES_4819 PF00271 Helicase conserved C-terminal domain AMES_4819 PF08148 DSHCT (NUC185) domain AMES_4819 PF00270 DEAD/DEAH box helicase AMES_4820 PF00781 Diacylglycerol kinase catalytic domain AMES_4822 PF00902 Sec-independent protein translocase protein (TatC) AMES_4823 PF02416 mttA/Hcf106 family AMES_4825 PF13280 WYL domain AMES_4826 PF13280 WYL domain AMES_4827 PF01638 HxlR-like helix-turn-helix AMES_4830 PF00106 short chain dehydrogenase AMES_4831 PF03136 Pup-ligase protein AMES_4834 PF00227 Proteasome subunit AMES_4835 PF00227 Proteasome subunit AMES_4836 PF05639 Pup-like protein AMES_4837 PF03136 Pup-ligase protein AMES_4839 PF00293 NUDIX domain AMES_4845 PF00892 EamA-like transporter family AMES_4846 PF17758 Proteasomal ATPase OB N-terminal domain AMES_4846 PF00004 ATPase family associated with various cellular activities (AAA) AMES_4846 PF16450 Proteasomal ATPase OB C-terminal domain AMES_4850 PF08704 tRNA methyltransferase complex GCD14 subunit AMES_4851 PF00571 CBS domain AMES_4851 PF02163 Peptidase family M50 AMES_4854 PF13614 AAA domain AMES_4855 PF01634 ATP phosphoribosyltransferase AMES_4855 PF08029 HisG, C-terminal domain AMES_4856 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AMES_4857 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMES_4857 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AMES_4858 PF02805 Metal binding domain of Ada AMES_4858 PF06029 AlkA N-terminal domain AMES_4858 PF00730 HhH-GPD superfamily base excision DNA repair protein AMES_4858 PF12833 Helix-turn-helix domain AMES_4859 PF13419 Haloacid dehalogenase-like hydrolase AMES_4860 PF00809 Pterin binding enzyme AMES_4860 PF02965 Vitamin B12 dependent methionine synthase, activation domain AMES_4860 PF02310 B12 binding domain AMES_4860 PF02607 B12 binding domain AMES_4860 PF02574 Homocysteine S-methyltransferase AMES_4866 PF07690 Major Facilitator Superfamily AMES_4867 PF00144 Beta-lactamase AMES_4870 PF00005 ABC transporter AMES_4871 PF01406 tRNA synthetases class I (C) catalytic domain AMES_4872 PF07739 TipAS antibiotic-recognition domain AMES_4872 PF13411 MerR HTH family regulatory protein AMES_4873 PF01979 Amidohydrolase family AMES_4873 PF13382 Adenine deaminase C-terminal domain AMES_4875 PF17863 AAA lid domain AMES_4875 PF01078 Magnesium chelatase, subunit ChlI AMES_4880 PF07690 Major Facilitator Superfamily AMES_4883 PF00083 Sugar (and other) transporter AMES_4884 PF00072 Response regulator receiver domain AMES_4884 PF00486 Transcriptional regulatory protein, C terminal AMES_4885 PF00672 HAMP domain AMES_4885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_4885 PF00512 His Kinase A (phospho-acceptor) domain AMES_4888 PF00588 SpoU rRNA Methylase family AMES_4890 PF07584 Aerotolerance regulator N-terminal AMES_4890 PF13519 von Willebrand factor type A domain AMES_4891 PF01882 Protein of unknown function DUF58 AMES_4892 PF17863 AAA lid domain AMES_4892 PF07726 ATPase family associated with various cellular activities (AAA) AMES_4893 PF12804 MobA-like NTP transferase domain AMES_4895 PF00877 NlpC/P60 family AMES_4896 PF00694 Aconitase C-terminal domain AMES_4896 PF00330 Aconitase family (aconitate hydratase) AMES_4897 PF02308 MgtC family AMES_4899 PF00440 Bacterial regulatory proteins, tetR family AMES_4900 PF00561 alpha/beta hydrolase fold AMES_4902 PF10017 Histidine-specific methyltransferase, SAM-dependent AMES_4904 PF03781 Sulfatase-modifying factor enzyme 1 AMES_4904 PF12867 DinB superfamily AMES_4905 PF04107 Glutamate-cysteine ligase family 2(GCS2) AMES_4907 PF00561 alpha/beta hydrolase fold AMES_4908 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AMES_4908 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMES_4913 PF00440 Bacterial regulatory proteins, tetR family AMES_4914 PF03471 Transporter associated domain AMES_4914 PF01595 Cyclin M transmembrane N-terminal domain AMES_4914 PF00571 CBS domain AMES_4915 PF01595 Cyclin M transmembrane N-terminal domain AMES_4915 PF00571 CBS domain AMES_4917 PF00248 Aldo/keto reductase family AMES_4921 PF01370 NAD dependent epimerase/dehydratase family AMES_4922 PF00535 Glycosyl transferase family 2 AMES_4923 PF16363 GDP-mannose 4,6 dehydratase AMES_4924 PF02347 Glycine cleavage system P-protein AMES_4925 PF13411 MerR HTH family regulatory protein AMES_4926 PF00085 Thioredoxin AMES_4928 PF13411 MerR HTH family regulatory protein AMES_4929 PF02577 Bifunctional nuclease AMES_4930 PF00376 MerR family regulatory protein AMES_4931 PF00498 FHA domain AMES_4932 PF01597 Glycine cleavage H-protein AMES_4937 PF13193 AMP-binding enzyme C-terminal domain AMES_4937 PF00501 AMP-binding enzyme AMES_4938 PF00378 Enoyl-CoA hydratase/isomerase AMES_4939 PF00561 alpha/beta hydrolase fold AMES_4940 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMES_4940 PF10414 Sirohaem synthase dimerisation region AMES_4943 PF00253 Ribosomal protein S14p/S29e AMES_4944 PF00471 Ribosomal protein L33 AMES_4945 PF01197 Ribosomal protein L31 AMES_4946 PF01783 Ribosomal L32p protein family AMES_4950 PF01738 Dienelactone hydrolase family AMES_4952 PF00282 Pyridoxal-dependent decarboxylase conserved domain AMES_4954 PF00296 Luciferase-like monooxygenase AMES_4960 PF00296 Luciferase-like monooxygenase AMES_4963 PF00005 ABC transporter AMES_4964 PF00528 Binding-protein-dependent transport system inner membrane component AMES_4965 PF00753 Metallo-beta-lactamase superfamily AMES_4965 PF16123 Hydroxyacylglutathione hydrolase C-terminus AMES_4966 PF01409 tRNA synthetases class II core domain (F) AMES_4966 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AMES_4969 PF00005 ABC transporter AMES_4969 PF00664 ABC transporter transmembrane region AMES_4970 PF00005 ABC transporter AMES_4970 PF00664 ABC transporter transmembrane region AMES_4971 PF03621 MbtH-like protein AMES_4973 PF02261 Aspartate decarboxylase AMES_4974 PF13193 AMP-binding enzyme C-terminal domain AMES_4974 PF00668 Condensation domain AMES_4974 PF00550 Phosphopantetheine attachment site AMES_4974 PF00501 AMP-binding enzyme AMES_4975 PF01032 FecCD transport family AMES_4976 PF01032 FecCD transport family AMES_4977 PF00005 ABC transporter AMES_4978 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AMES_4980 PF02911 Formyl transferase, C-terminal domain AMES_4980 PF01370 NAD dependent epimerase/dehydratase family AMES_4980 PF00551 Formyl transferase AMES_4982 PF16874 Glycosyl hydrolase family 36 C-terminal domain AMES_4982 PF16875 Glycosyl hydrolase family 36 N-terminal domain AMES_4984 PF00528 Binding-protein-dependent transport system inner membrane component AMES_4986 PF12848 ABC transporter AMES_4986 PF00005 ABC transporter AMES_4988 PF00378 Enoyl-CoA hydratase/isomerase AMES_4989 PF00704 Glycosyl hydrolases family 18 AMES_4989 PF00041 Fibronectin type III domain AMES_4989 PF00553 Cellulose binding domain AMES_4990 PF00589 Phage integrase family AMES_4994 PF13340 Putative transposase of IS4/5 family (DUF4096) AMES_4997 PF00589 Phage integrase family AMES_5002 PF16656 Purple acid Phosphatase, N-terminal domain AMES_5002 PF00149 Calcineurin-like phosphoesterase AMES_5003 PF00722 Glycosyl hydrolases family 16 AMES_5004 PF00553 Cellulose binding domain AMES_5004 PF00331 Glycosyl hydrolase family 10 AMES_5005 PF01047 MarR family AMES_5005 PF00480 ROK family AMES_5006 PF02838 Glycosyl hydrolase family 20, domain 2 AMES_5006 PF00728 Glycosyl hydrolase family 20, catalytic domain AMES_5007 PF00703 Glycosyl hydrolases family 2 AMES_5007 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMES_5007 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain AMES_5008 PF01270 Glycosyl hydrolases family 8 AMES_5011 PF13378 Enolase C-terminal domain-like AMES_5011 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMES_5012 PF00356 Bacterial regulatory proteins, lacI family AMES_5013 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMES_5013 PF13378 Enolase C-terminal domain-like AMES_5014 PF00528 Binding-protein-dependent transport system inner membrane component AMES_5016 PF00005 ABC transporter AMES_5017 PF00512 His Kinase A (phospho-acceptor) domain AMES_5017 PF00672 HAMP domain AMES_5017 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_5018 PF00486 Transcriptional regulatory protein, C terminal AMES_5018 PF00072 Response regulator receiver domain AMES_5022 PF00561 alpha/beta hydrolase fold AMES_5023 PF07690 Major Facilitator Superfamily AMES_5024 PF01047 MarR family AMES_5025 PF00230 Major intrinsic protein AMES_5027 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMES_5027 PF00205 Thiamine pyrophosphate enzyme, central domain AMES_5027 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMES_5028 PF01738 Dienelactone hydrolase family AMES_5030 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMES_5032 PF01494 FAD binding domain AMES_5034 PF03466 LysR substrate binding domain AMES_5034 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMES_5036 PF00005 ABC transporter AMES_5037 PF02653 Branched-chain amino acid transport system / permease component AMES_5039 PF04542 Sigma-70 region 2 AMES_5039 PF08281 Sigma-70, region 4 AMES_5040 PF07724 AAA domain (Cdc48 subfamily) AMES_5040 PF10431 C-terminal, D2-small domain, of ClpB protein AMES_5040 PF06689 ClpX C4-type zinc finger AMES_5044 PF01183 Glycosyl hydrolases family 25 AMES_5046 PF04055 Radical SAM superfamily AMES_5046 PF06969 HemN C-terminal domain AMES_5047 PF00535 Glycosyl transferase family 2 AMES_5054 PF00106 short chain dehydrogenase AMES_5055 PF09106 Elongation factor SelB, winged helix AMES_5055 PF09105 Elongation factor SelB, winged helix AMES_5055 PF00009 Elongation factor Tu GTP binding domain AMES_5055 PF00009 Elongation factor Tu GTP binding domain AMES_5055 PF09107 Elongation factor SelB, winged helix AMES_5055 PF09105 Elongation factor SelB, winged helix AMES_5055 PF03144 Elongation factor Tu domain 2 AMES_5055 PF03144 Elongation factor Tu domain 2 AMES_5055 PF09106 Elongation factor SelB, winged helix AMES_5055 PF09107 Elongation factor SelB, winged helix AMES_5057 PF03841 L-seryl-tRNA selenium transferase AMES_5057 PF12390 Selenocysteine synthase N terminal AMES_5058 PF00586 AIR synthase related protein, N-terminal domain AMES_5058 PF02769 AIR synthase related protein, C-terminal domain AMES_5063 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMES_5064 PF02525 Flavodoxin-like fold AMES_5068 PF00561 alpha/beta hydrolase fold AMES_5068 PF08386 TAP-like protein AMES_5069 PF01494 FAD binding domain AMES_5075 PF00561 alpha/beta hydrolase fold AMES_5077 PF00440 Bacterial regulatory proteins, tetR family AMES_5078 PF02983 Alpha-lytic protease prodomain AMES_5085 PF03176 MMPL family AMES_5089 PF02675 S-adenosylmethionine decarboxylase AMES_5090 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMES_5090 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMES_5099 PF00072 Response regulator receiver domain AMES_5099 PF01339 CheB methylesterase AMES_5100 PF07730 Histidine kinase AMES_5100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_5100 PF00672 HAMP domain AMES_5102 PF00072 Response regulator receiver domain AMES_5102 PF00196 Bacterial regulatory proteins, luxR family AMES_5105 PF03091 CutA1 divalent ion tolerance protein AMES_5106 PF00012 Hsp70 protein AMES_5108 PF00350 Dynamin family AMES_5109 PF00350 Dynamin family AMES_5113 PF00809 Pterin binding enzyme AMES_5113 PF02965 Vitamin B12 dependent methionine synthase, activation domain AMES_5113 PF02310 B12 binding domain AMES_5113 PF02607 B12 binding domain AMES_5113 PF02574 Homocysteine S-methyltransferase AMES_5114 PF01494 FAD binding domain AMES_5115 PF00296 Luciferase-like monooxygenase AMES_5116 PF00083 Sugar (and other) transporter AMES_5117 PF03442 Carbohydrate binding domain X2 AMES_5117 PF00942 Cellulose binding domain AMES_5118 PF00107 Zinc-binding dehydrogenase AMES_5118 PF08240 Alcohol dehydrogenase GroES-like domain AMES_5123 PF00553 Cellulose binding domain AMES_5123 PF00150 Cellulase (glycosyl hydrolase family 5) AMES_5124 PF00248 Aldo/keto reductase family AMES_5126 PF00553 Cellulose binding domain AMES_5126 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AMES_5127 PF00356 Bacterial regulatory proteins, lacI family AMES_5129 PF00041 Fibronectin type III domain AMES_5129 PF01341 Glycosyl hydrolases family 6 AMES_5129 PF00553 Cellulose binding domain AMES_5130 PF00553 Cellulose binding domain AMES_5130 PF00150 Cellulase (glycosyl hydrolase family 5) AMES_5131 PF00553 Cellulose binding domain AMES_5131 PF00041 Fibronectin type III domain AMES_5131 PF02011 Glycosyl hydrolase family 48 AMES_5132 PF00356 Bacterial regulatory proteins, lacI family AMES_5134 PF00528 Binding-protein-dependent transport system inner membrane component AMES_5135 PF00528 Binding-protein-dependent transport system inner membrane component AMES_5136 PF00232 Glycosyl hydrolase family 1 AMES_5137 PF00920 Dehydratase family AMES_5139 PF00571 CBS domain AMES_5140 PF03167 Uracil DNA glycosylase superfamily AMES_5141 PF13298 DNA polymerase Ligase (LigD) AMES_5141 PF01068 ATP dependent DNA ligase domain AMES_5141 PF04679 ATP dependent DNA ligase C terminal region AMES_5142 PF04679 ATP dependent DNA ligase C terminal region AMES_5142 PF13298 DNA polymerase Ligase (LigD) AMES_5142 PF01068 ATP dependent DNA ligase domain AMES_5143 PF02735 Ku70/Ku80 beta-barrel domain AMES_5148 PF00296 Luciferase-like monooxygenase AMES_5150 PF13581 Histidine kinase-like ATPase domain AMES_5151 PF04539 Sigma-70 region 3 AMES_5151 PF04542 Sigma-70 region 2 AMES_5151 PF04545 Sigma-70, region 4 AMES_5152 PF01928 CYTH domain AMES_5152 PF05235 CHAD domain AMES_5156 PF03364 Polyketide cyclase / dehydrase and lipid transport AMES_5162 PF03466 LysR substrate binding domain AMES_5162 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMES_5164 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMES_5164 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMES_5168 PF00083 Sugar (and other) transporter AMES_5168 PF07690 Major Facilitator Superfamily AMES_5170 PF00583 Acetyltransferase (GNAT) family AMES_5172 PF05593 RHS Repeat AMES_5172 PF05488 PAAR motif AMES_5181 PF00941 FAD binding domain in molybdopterin dehydrogenase AMES_5181 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMES_5182 PF00111 2Fe-2S iron-sulfur cluster binding domain AMES_5182 PF01799 [2Fe-2S] binding domain AMES_5183 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMES_5183 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMES_5188 PF00356 Bacterial regulatory proteins, lacI family AMES_5189 PF00722 Glycosyl hydrolases family 16 AMES_5191 PF00753 Metallo-beta-lactamase superfamily AMES_5193 PF00925 GTP cyclohydrolase II AMES_5197 PF00817 impB/mucB/samB family AMES_5197 PF11799 impB/mucB/samB family C-terminal domain AMES_5199 PF00583 Acetyltransferase (GNAT) family AMES_5200 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AMES_5200 PF05221 S-adenosyl-L-homocysteine hydrolase AMES_5203 PF02735 Ku70/Ku80 beta-barrel domain AMES_5207 PF03259 Roadblock/LC7 domain AMES_5208 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_5210 PF00005 ABC transporter AMES_5210 PF00664 ABC transporter transmembrane region AMES_5211 PF00664 ABC transporter transmembrane region AMES_5211 PF00005 ABC transporter AMES_5213 PF01068 ATP dependent DNA ligase domain AMES_5213 PF13298 DNA polymerase Ligase (LigD) AMES_5213 PF04679 ATP dependent DNA ligase C terminal region AMES_5215 PF00931 NB-ARC domain AMES_5215 PF03704 Bacterial transcriptional activator domain AMES_5215 PF00486 Transcriptional regulatory protein, C terminal AMES_5216 PF01965 DJ-1/PfpI family AMES_5217 PF01965 DJ-1/PfpI family AMES_5220 PF00753 Metallo-beta-lactamase superfamily AMES_5223 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMES_5223 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMES_5223 PF00378 Enoyl-CoA hydratase/isomerase AMES_5225 PF00561 alpha/beta hydrolase fold AMES_5230 PF04607 Region found in RelA / SpoT proteins AMES_5230 PF13291 ACT domain AMES_5230 PF02824 TGS domain AMES_5231 PF01979 Amidohydrolase family AMES_5232 PF00156 Phosphoribosyl transferase domain AMES_5233 PF02355 Protein export membrane protein AMES_5233 PF07549 SecD/SecF GG Motif AMES_5234 PF02355 Protein export membrane protein AMES_5234 PF07549 SecD/SecF GG Motif AMES_5235 PF02699 Preprotein translocase subunit AMES_5236 PF05496 Holliday junction DNA helicase RuvB P-loop domain AMES_5236 PF05491 RuvB C-terminal winged helix domain AMES_5236 PF17864 RuvB AAA lid domain AMES_5237 PF07499 RuvA, C-terminal domain AMES_5237 PF01330 RuvA N terminal domain AMES_5238 PF02075 Crossover junction endodeoxyribonuclease RuvC AMES_5241 PF01709 Transcriptional regulator AMES_5242 PF01174 SNO glutamine amidotransferase family AMES_5245 PF01381 Helix-turn-helix AMES_5245 PF08671 Anti-repressor SinI AMES_5246 PF01494 FAD binding domain AMES_5247 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_5247 PF02770 Acyl-CoA dehydrogenase, middle domain AMES_5247 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_5248 PF00550 Phosphopantetheine attachment site AMES_5248 PF00668 Condensation domain AMES_5248 PF13193 AMP-binding enzyme C-terminal domain AMES_5248 PF00501 AMP-binding enzyme AMES_5251 PF01680 SOR/SNZ family AMES_5253 PF08031 Berberine and berberine like AMES_5253 PF01565 FAD binding domain AMES_5254 PF00009 Elongation factor Tu GTP binding domain AMES_5254 PF03764 Elongation factor G, domain IV AMES_5254 PF00679 Elongation factor G C-terminus AMES_5254 PF03144 Elongation factor Tu domain 2 AMES_5254 PF14492 Elongation Factor G, domain II AMES_5255 PF13478 XdhC Rossmann domain AMES_5255 PF02625 XdhC and CoxI family AMES_5259 PF13439 Glycosyltransferase Family 4 AMES_5260 PF03279 Bacterial lipid A biosynthesis acyltransferase AMES_5263 PF01230 HIT domain AMES_5264 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMES_5264 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMES_5264 PF03129 Anticodon binding domain AMES_5265 PF00881 Nitroreductase family AMES_5266 PF02397 Bacterial sugar transferase AMES_5267 PF04686 Streptomyces sporulation and cell division protein, SsgA AMES_5269 PF00595 PDZ domain AMES_5269 PF13180 PDZ domain AMES_5270 PF17862 AAA+ lid domain AMES_5270 PF06480 FtsH Extracellular AMES_5270 PF01434 Peptidase family M41 AMES_5270 PF00004 ATPase family associated with various cellular activities (AAA) AMES_5271 PF03773 Predicted permease AMES_5274 PF00106 short chain dehydrogenase AMES_5275 PF00378 Enoyl-CoA hydratase/isomerase AMES_5276 PF13193 AMP-binding enzyme C-terminal domain AMES_5276 PF00501 AMP-binding enzyme AMES_5277 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AMES_5277 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMES_5279 PF01546 Peptidase family M20/M25/M40 AMES_5279 PF07687 Peptidase dimerisation domain AMES_5282 PF13382 Adenine deaminase C-terminal domain AMES_5282 PF01979 Amidohydrolase family AMES_5285 PF05199 GMC oxidoreductase AMES_5285 PF00732 GMC oxidoreductase AMES_5286 PF01494 FAD binding domain AMES_5288 PF13193 AMP-binding enzyme C-terminal domain AMES_5288 PF00501 AMP-binding enzyme AMES_5293 PF16925 Tetracyclin repressor-like, C-terminal domain AMES_5293 PF00440 Bacterial regulatory proteins, tetR family AMES_5301 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMES_5301 PF01842 ACT domain AMES_5301 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMES_5302 PF00528 Binding-protein-dependent transport system inner membrane component AMES_5303 PF00528 Binding-protein-dependent transport system inner membrane component AMES_5305 PF00356 Bacterial regulatory proteins, lacI family AMES_5306 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMES_5308 PF07690 Major Facilitator Superfamily AMES_5311 PF08361 MAATS-type transcriptional repressor, C-terminal region AMES_5311 PF00440 Bacterial regulatory proteins, tetR family AMES_5319 PF00392 Bacterial regulatory proteins, gntR family AMES_5319 PF07729 FCD domain AMES_5323 PF00583 Acetyltransferase (GNAT) family AMES_5327 PF05199 GMC oxidoreductase AMES_5327 PF00732 GMC oxidoreductase AMES_5328 PF00483 Nucleotidyl transferase AMES_5329 PF00109 Beta-ketoacyl synthase, N-terminal domain AMES_5329 PF16197 Ketoacyl-synthetase C-terminal extension AMES_5329 PF13193 AMP-binding enzyme C-terminal domain AMES_5329 PF00668 Condensation domain AMES_5329 PF00501 AMP-binding enzyme AMES_5329 PF00550 Phosphopantetheine attachment site AMES_5329 PF02801 Beta-ketoacyl synthase, C-terminal domain AMES_5329 PF00202 Aminotransferase class-III AMES_5333 PF06722 Protein of unknown function (DUF1205) AMES_5335 PF03301 Tryptophan 2,3-dioxygenase AMES_5337 PF03559 NDP-hexose 2,3-dehydratase AMES_5338 PF00072 Response regulator receiver domain AMES_5338 PF00196 Bacterial regulatory proteins, luxR family AMES_5339 PF07730 Histidine kinase AMES_5341 PF00005 ABC transporter AMES_5343 PF17843 MycE methyltransferase N-terminal AMES_5344 PF00975 Thioesterase domain AMES_5344 PF00550 Phosphopantetheine attachment site AMES_5344 PF00668 Condensation domain AMES_5344 PF13193 AMP-binding enzyme C-terminal domain AMES_5344 PF00501 AMP-binding enzyme AMES_5345 PF06722 Protein of unknown function (DUF1205) AMES_5346 PF06722 Protein of unknown function (DUF1205) AMES_5347 PF06722 Protein of unknown function (DUF1205) AMES_5348 PF06722 Protein of unknown function (DUF1205) AMES_5349 PF06722 Protein of unknown function (DUF1205) AMES_5351 PF00005 ABC transporter AMES_5351 PF13732 Domain of unknown function (DUF4162) AMES_5353 PF06722 Protein of unknown function (DUF1205) AMES_5354 PF06722 Protein of unknown function (DUF1205) AMES_5355 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMES_5356 PF00486 Transcriptional regulatory protein, C terminal AMES_5356 PF03704 Bacterial transcriptional activator domain AMES_5357 PF06722 Protein of unknown function (DUF1205) AMES_5358 PF00391 PEP-utilising enzyme, mobile domain AMES_5358 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AMES_5359 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMES_5359 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMES_5367 PF03364 Polyketide cyclase / dehydrase and lipid transport AMES_5368 PF00550 Phosphopantetheine attachment site AMES_5369 PF00109 Beta-ketoacyl synthase, N-terminal domain AMES_5369 PF02801 Beta-ketoacyl synthase, C-terminal domain AMES_5370 PF00109 Beta-ketoacyl synthase, N-terminal domain AMES_5370 PF02801 Beta-ketoacyl synthase, C-terminal domain AMES_5371 PF07883 Cupin domain AMES_5372 PF04673 Polyketide synthesis cyclase AMES_5374 PF00854 POT family AMES_5375 PF16864 Dimerisation domain AMES_5375 PF00891 O-methyltransferase domain AMES_5376 PF01494 FAD binding domain AMES_5377 PF01494 FAD binding domain AMES_5379 PF00296 Luciferase-like monooxygenase AMES_5381 PF00067 Cytochrome P450 AMES_5382 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMES_5384 PF16363 GDP-mannose 4,6 dehydratase AMES_5385 PF01370 NAD dependent epimerase/dehydratase family AMES_5388 PF00196 Bacterial regulatory proteins, luxR family AMES_5389 PF03527 RHS protein AMES_5395 PF00916 Sulfate permease family AMES_5395 PF01740 STAS domain AMES_5397 PF00582 Universal stress protein family AMES_5401 PF00689 Cation transporting ATPase, C-terminus AMES_5401 PF00690 Cation transporter/ATPase, N-terminus AMES_5404 PF00871 Acetokinase family AMES_5405 PF13607 Succinyl-CoA ligase like flavodoxin domain AMES_5405 PF13380 CoA binding domain AMES_5405 PF00583 Acetyltransferase (GNAT) family AMES_5406 PF13492 GAF domain AMES_5406 PF13185 GAF domain AMES_5406 PF07730 Histidine kinase AMES_5406 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_5408 PF00196 Bacterial regulatory proteins, luxR family AMES_5408 PF00072 Response regulator receiver domain AMES_5409 PF01654 Cytochrome bd terminal oxidase subunit I AMES_5410 PF02322 Cytochrome bd terminal oxidase subunit II AMES_5411 PF00664 ABC transporter transmembrane region AMES_5411 PF00005 ABC transporter AMES_5412 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase AMES_5412 PF09364 XFP N-terminal domain AMES_5412 PF09363 XFP C-terminal domain AMES_5413 PF00582 Universal stress protein family AMES_5414 PF03448 MgtE intracellular N domain AMES_5414 PF00571 CBS domain AMES_5414 PF01769 Divalent cation transporter AMES_5415 PF00582 Universal stress protein family AMES_5417 PF00582 Universal stress protein family AMES_5420 PF04107 Glutamate-cysteine ligase family 2(GCS2) AMES_5422 PF12900 Pyridoxamine 5'-phosphate oxidase AMES_5424 PF07730 Histidine kinase AMES_5425 PF00072 Response regulator receiver domain AMES_5425 PF00196 Bacterial regulatory proteins, luxR family AMES_5429 PF07730 Histidine kinase AMES_5429 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_5430 PF00072 Response regulator receiver domain AMES_5430 PF00196 Bacterial regulatory proteins, luxR family AMES_5434 PF03033 Glycosyltransferase family 28 N-terminal domain AMES_5435 PF01047 MarR family AMES_5440 PF17200 Single Cache domain 2 AMES_5440 PF07730 Histidine kinase AMES_5441 PF00196 Bacterial regulatory proteins, luxR family AMES_5441 PF00072 Response regulator receiver domain AMES_5448 PF10502 Signal peptidase, peptidase S26 AMES_5450 PF00872 Transposase, Mutator family AMES_5457 PF00067 Cytochrome P450 AMES_5461 PF00296 Luciferase-like monooxygenase AMES_5463 PF08448 PAS fold AMES_5463 PF00990 Diguanylate cyclase, GGDEF domain AMES_5467 PF07690 Major Facilitator Superfamily AMES_5469 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMES_5469 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMES_5472 PF00535 Glycosyl transferase family 2 AMES_5472 PF02709 N-terminal domain of galactosyltransferase AMES_5473 PF00535 Glycosyl transferase family 2 AMES_5474 PF00664 ABC transporter transmembrane region AMES_5474 PF00005 ABC transporter AMES_5475 PF00664 ABC transporter transmembrane region AMES_5475 PF00005 ABC transporter AMES_5479 PF06441 Epoxide hydrolase N terminus AMES_5480 PF07859 alpha/beta hydrolase fold AMES_5490 PF07690 Major Facilitator Superfamily AMES_5492 PF03704 Bacterial transcriptional activator domain AMES_5492 PF00486 Transcriptional regulatory protein, C terminal AMES_5492 PF00931 NB-ARC domain AMES_5493 PF03551 Transcriptional regulator PadR-like family AMES_5493 PF13847 Methyltransferase domain AMES_5497 PF00704 Glycosyl hydrolases family 18 AMES_5499 PF03358 NADPH-dependent FMN reductase AMES_5502 PF07730 Histidine kinase AMES_5502 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_5502 PF13492 GAF domain AMES_5502 PF13185 GAF domain AMES_5503 PF00072 Response regulator receiver domain AMES_5503 PF00196 Bacterial regulatory proteins, luxR family AMES_5506 PF16200 C-terminal region of band_7 AMES_5506 PF01145 SPFH domain / Band 7 family AMES_5508 PF05139 Erythromycin esterase AMES_5508 PF00156 Phosphoribosyl transferase domain AMES_5517 PF01594 AI-2E family transporter AMES_5521 PF04107 Glutamate-cysteine ligase family 2(GCS2) AMES_5529 PF00072 Response regulator receiver domain AMES_5529 PF00486 Transcriptional regulatory protein, C terminal AMES_5530 PF00512 His Kinase A (phospho-acceptor) domain AMES_5530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_5530 PF00672 HAMP domain AMES_5532 PF00534 Glycosyl transferases group 1 AMES_5532 PF13439 Glycosyltransferase Family 4 AMES_5538 PF17754 MftR C-terminal domain AMES_5538 PF00440 Bacterial regulatory proteins, tetR family AMES_5539 PF08281 Sigma-70, region 4 AMES_5539 PF04542 Sigma-70 region 2 AMES_5540 PF08281 Sigma-70, region 4 AMES_5540 PF04542 Sigma-70 region 2 AMES_5544 PF00703 Glycosyl hydrolases family 2 AMES_5544 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMES_5544 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMES_5545 PF03466 LysR substrate binding domain AMES_5545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMES_5552 PF00069 Protein kinase domain AMES_5553 PF04542 Sigma-70 region 2 AMES_5553 PF12680 SnoaL-like domain AMES_5553 PF08281 Sigma-70, region 4 AMES_5554 PF04072 Leucine carboxyl methyltransferase AMES_5556 PF00067 Cytochrome P450 AMES_5558 PF00067 Cytochrome P450 AMES_5560 PF01494 FAD binding domain AMES_5563 PF06441 Epoxide hydrolase N terminus AMES_5564 PF06441 Epoxide hydrolase N terminus AMES_5566 PF00156 Phosphoribosyl transferase domain AMES_5568 PF00196 Bacterial regulatory proteins, luxR family AMES_5569 PF00211 Adenylate and Guanylate cyclase catalytic domain AMES_5569 PF13191 AAA ATPase domain AMES_5576 PF07690 Major Facilitator Superfamily AMES_5578 PF00196 Bacterial regulatory proteins, luxR family AMES_5581 PF00005 ABC transporter AMES_5589 PF12849 PBP superfamily domain AMES_5590 PF00528 Binding-protein-dependent transport system inner membrane component AMES_5591 PF00528 Binding-protein-dependent transport system inner membrane component AMES_5593 PF00672 HAMP domain AMES_5593 PF00512 His Kinase A (phospho-acceptor) domain AMES_5593 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_5594 PF00072 Response regulator receiver domain AMES_5594 PF00486 Transcriptional regulatory protein, C terminal AMES_5595 PF00535 Glycosyl transferase family 2 AMES_5596 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase AMES_5598 PF07690 Major Facilitator Superfamily AMES_5599 PF01494 FAD binding domain AMES_5601 PF00356 Bacterial regulatory proteins, lacI family AMES_5603 PF16295 Tetracyclin repressor-like, C-terminal domain AMES_5603 PF00440 Bacterial regulatory proteins, tetR family AMES_5608 PF00561 alpha/beta hydrolase fold AMES_5614 PF08281 Sigma-70, region 4 AMES_5614 PF04542 Sigma-70 region 2 AMES_5618 PF00857 Isochorismatase family AMES_5620 PF08386 TAP-like protein AMES_5620 PF00561 alpha/beta hydrolase fold AMES_5623 PF01494 FAD binding domain AMES_5625 PF09209 Tetracyclin repressor-like, C-terminal domain AMES_5625 PF00440 Bacterial regulatory proteins, tetR family AMES_5627 PF01593 Flavin containing amine oxidoreductase AMES_5628 PF01614 Bacterial transcriptional regulator AMES_5628 PF09339 IclR helix-turn-helix domain AMES_5631 PF00561 alpha/beta hydrolase fold AMES_5632 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AMES_5633 PF00313 'Cold-shock' DNA-binding domain AMES_5634 PF00440 Bacterial regulatory proteins, tetR family AMES_5634 PF08361 MAATS-type transcriptional repressor, C-terminal region AMES_5636 PF00106 short chain dehydrogenase AMES_5638 PF03795 YCII-related domain AMES_5640 PF02929 Beta galactosidase small chain AMES_5640 PF00703 Glycosyl hydrolases family 2 AMES_5640 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMES_5640 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMES_5640 PF16353 Domain of unknown function(DUF4981) AMES_5641 PF00999 Sodium/hydrogen exchanger family AMES_5641 PF02080 TrkA-C domain AMES_5641 PF03471 Transporter associated domain AMES_5642 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMES_5643 PF00355 Rieske [2Fe-2S] domain AMES_5644 PF13631 Cytochrome b(N-terminal)/b6/petB AMES_5645 PF13631 Cytochrome b(N-terminal)/b6/petB AMES_5650 PF01494 FAD binding domain AMES_5652 PF00072 Response regulator receiver domain AMES_5652 PF00486 Transcriptional regulatory protein, C terminal AMES_5653 PF00672 HAMP domain AMES_5653 PF00512 His Kinase A (phospho-acceptor) domain AMES_5653 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_5655 PF01638 HxlR-like helix-turn-helix AMES_5657 PF01047 MarR family AMES_5658 PF00654 Voltage gated chloride channel AMES_5665 PF12800 4Fe-4S binding domain AMES_5665 PF13247 4Fe-4S dicluster domain AMES_5672 PF01226 Formate/nitrite transporter AMES_5673 PF03600 Citrate transporter AMES_5677 PF13520 Amino acid permease AMES_5678 PF04072 Leucine carboxyl methyltransferase AMES_5681 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMES_5681 PF00941 FAD binding domain in molybdopterin dehydrogenase AMES_5682 PF00111 2Fe-2S iron-sulfur cluster binding domain AMES_5682 PF01799 [2Fe-2S] binding domain AMES_5684 PF00248 Aldo/keto reductase family AMES_5685 PF08240 Alcohol dehydrogenase GroES-like domain AMES_5685 PF13823 Alcohol dehydrogenase GroES-associated AMES_5685 PF00107 Zinc-binding dehydrogenase AMES_5688 PF00248 Aldo/keto reductase family AMES_5696 PF00356 Bacterial regulatory proteins, lacI family AMES_5697 PF00356 Bacterial regulatory proteins, lacI family AMES_5701 PF00356 Bacterial regulatory proteins, lacI family AMES_5705 PF02311 AraC-like ligand binding domain AMES_5705 PF12833 Helix-turn-helix domain AMES_5708 PF00196 Bacterial regulatory proteins, luxR family AMES_5728 PF13340 Putative transposase of IS4/5 family (DUF4096) AMES_5731 PF09704 CRISPR-associated protein (Cas_Cas5) AMES_5732 PF09344 CT1975-like protein AMES_5736 PF18019 HD domain AMES_5736 PF18395 Cas3 C-terminal domain AMES_5748 PF00553 Cellulose binding domain AMES_5748 PF00041 Fibronectin type III domain AMES_5748 PF02011 Glycosyl hydrolase family 48 AMES_5751 PF00011 Hsp20/alpha crystallin family AMES_5753 PF01425 Amidase AMES_5754 PF01022 Bacterial regulatory protein, arsR family AMES_5755 PF00376 MerR family regulatory protein AMES_5755 PF09278 MerR, DNA binding AMES_5756 PF16916 Dimerisation domain of Zinc Transporter AMES_5756 PF01545 Cation efflux family AMES_5759 PF00455 DeoR C terminal sensor domain AMES_5759 PF08220 DeoR-like helix-turn-helix domain AMES_5760 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMES_5760 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMES_5766 PF01547 Bacterial extracellular solute-binding protein AMES_5769 PF00069 Protein kinase domain AMES_5769 PF16919 Protein kinase G rubredoxin domain AMES_5769 PF16918 Protein kinase G tetratricopeptide repeat AMES_5772 PF08402 TOBE domain AMES_5772 PF00005 ABC transporter AMES_5774 PF04199 Putative cyclase AMES_5775 PF00205 Thiamine pyrophosphate enzyme, central domain AMES_5775 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMES_5775 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMES_5778 PF00072 Response regulator receiver domain AMES_5778 PF00196 Bacterial regulatory proteins, luxR family AMES_5781 PF02525 Flavodoxin-like fold AMES_5782 PF01047 MarR family AMES_5783 PF02355 Protein export membrane protein AMES_5785 PF13460 NAD(P)H-binding AMES_5785 PF11066 Protein of unknown function (DUF2867) AMES_5787 PF03466 LysR substrate binding domain AMES_5787 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMES_5790 PF00291 Pyridoxal-phosphate dependent enzyme AMES_5790 PF13291 ACT domain AMES_5792 PF00877 NlpC/P60 family AMES_5796 PF07498 Rho termination factor, N-terminal domain AMES_5796 PF07497 Rho termination factor, RNA-binding domain AMES_5796 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMES_5799 PF00652 Ricin-type beta-trefoil lectin domain AMES_5799 PF00331 Glycosyl hydrolase family 10 AMES_5801 PF00106 short chain dehydrogenase AMES_5802 PF00106 short chain dehydrogenase AMES_5803 PF01256 Carbohydrate kinase AMES_5804 PF13456 Reverse transcriptase-like AMES_5804 PF00300 Histidine phosphatase superfamily (branch 1) AMES_5810 PF00512 His Kinase A (phospho-acceptor) domain AMES_5810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_5810 PF00072 Response regulator receiver domain AMES_5810 PF13426 PAS domain AMES_5810 PF08448 PAS fold AMES_5814 PF00723 Glycosyl hydrolases family 15 AMES_5814 PF09137 Glucodextranase, domain N AMES_5815 PF04978 Protein of unknown function (DUF664) AMES_5816 PF00248 Aldo/keto reductase family AMES_5820 PF08386 TAP-like protein AMES_5820 PF00561 alpha/beta hydrolase fold AMES_5821 PF03704 Bacterial transcriptional activator domain AMES_5821 PF00486 Transcriptional regulatory protein, C terminal AMES_5821 PF00931 NB-ARC domain AMES_5833 PF00589 Phage integrase family AMES_5833 PF02899 Phage integrase, N-terminal SAM-like domain AMES_5834 PF00171 Aldehyde dehydrogenase family AMES_5844 PF01625 Peptide methionine sulfoxide reductase AMES_5845 PF02868 Thermolysin metallopeptidase, alpha-helical domain AMES_5845 PF02868 Thermolysin metallopeptidase, alpha-helical domain AMES_5845 PF04389 Peptidase family M28 AMES_5845 PF01447 Thermolysin metallopeptidase, catalytic domain AMES_5845 PF01447 Thermolysin metallopeptidase, catalytic domain AMES_5845 PF04389 Peptidase family M28 AMES_5847 PF13732 Domain of unknown function (DUF4162) AMES_5847 PF00005 ABC transporter AMES_5848 PF01061 ABC-2 type transporter AMES_5849 PF04075 F420H(2)-dependent quinone reductase AMES_5851 PF00106 short chain dehydrogenase AMES_5852 PF03793 PASTA domain AMES_5852 PF00069 Protein kinase domain AMES_5855 PF02146 Sir2 family AMES_5856 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMES_5856 PF10531 SLBB domain AMES_5856 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AMES_5860 PF04185 Phosphoesterase family AMES_5865 PF10503 Esterase PHB depolymerase AMES_5869 PF00083 Sugar (and other) transporter AMES_5874 PF13193 AMP-binding enzyme C-terminal domain AMES_5874 PF00501 AMP-binding enzyme AMES_5879 PF07728 AAA domain (dynein-related subfamily) AMES_5881 PF05762 VWA domain containing CoxE-like protein AMES_5882 PF00444 Ribosomal protein L36 AMES_5884 PF01638 HxlR-like helix-turn-helix AMES_5885 PF00743 Flavin-binding monooxygenase-like AMES_5886 PF02278 Polysaccharide lyase family 8, super-sandwich domain AMES_5886 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain AMES_5886 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain AMES_5887 PF00171 Aldehyde dehydrogenase family AMES_5889 PF13378 Enolase C-terminal domain-like AMES_5889 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMES_5890 PF00701 Dihydrodipicolinate synthetase family AMES_5892 PF01614 Bacterial transcriptional regulator AMES_5893 PF16363 GDP-mannose 4,6 dehydratase AMES_5897 PF01522 Polysaccharide deacetylase AMES_5897 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain AMES_5898 PF00072 Response regulator receiver domain AMES_5898 PF00196 Bacterial regulatory proteins, luxR family AMES_5904 PF00111 2Fe-2S iron-sulfur cluster binding domain AMES_5906 PF00465 Iron-containing alcohol dehydrogenase AMES_5908 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMES_5911 PF01433 Peptidase family M1 domain AMES_5911 PF11838 ERAP1-like C-terminal domain AMES_5912 PF00501 AMP-binding enzyme AMES_5912 PF00668 Condensation domain AMES_5912 PF00550 Phosphopantetheine attachment site AMES_5912 PF13193 AMP-binding enzyme C-terminal domain AMES_5913 PF01926 50S ribosome-binding GTPase AMES_5913 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AMES_5915 PF02224 Cytidylate kinase AMES_5919 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AMES_5919 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMES_5920 PF00999 Sodium/hydrogen exchanger family AMES_5921 PF04072 Leucine carboxyl methyltransferase AMES_5922 PF00849 RNA pseudouridylate synthase AMES_5922 PF01479 S4 domain AMES_5923 PF04079 Segregation and condensation complex subunit ScpB AMES_5924 PF02616 Segregation and condensation protein ScpA AMES_5926 PF13614 AAA domain AMES_5927 PF00589 Phage integrase family AMES_5927 PF02899 Phage integrase, N-terminal SAM-like domain AMES_5929 PF00293 NUDIX domain AMES_5930 PF06418 CTP synthase N-terminus AMES_5930 PF00117 Glutamine amidotransferase class-I AMES_5932 PF07729 FCD domain AMES_5932 PF00392 Bacterial regulatory proteins, gntR family AMES_5933 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AMES_5934 PF01177 Asp/Glu/Hydantoin racemase AMES_5937 PF11382 Copper transport outer membrane protein, MctB AMES_5940 PF00107 Zinc-binding dehydrogenase AMES_5940 PF08240 Alcohol dehydrogenase GroES-like domain AMES_5942 PF02463 RecF/RecN/SMC N terminal domain AMES_5943 PF01513 ATP-NAD kinase AMES_5944 PF01728 FtsJ-like methyltransferase AMES_5944 PF01479 S4 domain AMES_5946 PF13344 Haloacid dehalogenase-like hydrolase AMES_5946 PF18407 GCN5-related N-acetyltransferase like domain AMES_5948 PF00579 tRNA synthetases class I (W and Y) AMES_5949 PF02245 Methylpurine-DNA glycosylase (MPG) AMES_5951 PF13761 Domain of unknown function (DUF4166) AMES_5952 PF14698 Argininosuccinate lyase C-terminal AMES_5952 PF00206 Lyase AMES_5954 PF00764 Arginosuccinate synthase AMES_5955 PF01316 Arginine repressor, DNA binding domain AMES_5955 PF02863 Arginine repressor, C-terminal domain AMES_5956 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMES_5956 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMES_5957 PF00202 Aminotransferase class-III AMES_5958 PF00696 Amino acid kinase family AMES_5959 PF01960 ArgJ family AMES_5960 PF02774 Semialdehyde dehydrogenase, dimerisation domain AMES_5960 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMES_5963 PF00561 alpha/beta hydrolase fold AMES_5965 PF03147 Ferredoxin-fold anticodon binding domain AMES_5965 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AMES_5965 PF03483 B3/4 domain AMES_5965 PF03484 tRNA synthetase B5 domain AMES_5965 PF01588 Putative tRNA binding domain AMES_5966 PF01409 tRNA synthetases class II core domain (F) AMES_5966 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AMES_5968 PF00588 SpoU rRNA Methylase family AMES_5968 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMES_5969 PF00453 Ribosomal protein L20 AMES_5970 PF01632 Ribosomal protein L35 AMES_5971 PF00707 Translation initiation factor IF-3, C-terminal domain AMES_5971 PF05198 Translation initiation factor IF-3, N-terminal domain AMES_5973 PF00392 Bacterial regulatory proteins, gntR family AMES_5973 PF07729 FCD domain AMES_5974 PF00291 Pyridoxal-phosphate dependent enzyme AMES_5976 PF01614 Bacterial transcriptional regulator AMES_5976 PF09339 IclR helix-turn-helix domain AMES_5977 PF00294 pfkB family carbohydrate kinase AMES_5979 PF07969 Amidohydrolase family AMES_5980 PF02447 GntP family permease AMES_5983 PF00528 Binding-protein-dependent transport system inner membrane component AMES_5984 PF00528 Binding-protein-dependent transport system inner membrane component AMES_5985 PF00728 Glycosyl hydrolase family 20, catalytic domain AMES_5985 PF02838 Glycosyl hydrolase family 20, domain 2 AMES_5987 PF00072 Response regulator receiver domain AMES_5988 PF17203 Single cache domain 3 AMES_5988 PF00989 PAS fold AMES_5988 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_5988 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AMES_5989 PF00375 Sodium:dicarboxylate symporter family AMES_5991 PF07690 Major Facilitator Superfamily AMES_5994 PF04542 Sigma-70 region 2 AMES_5994 PF04545 Sigma-70, region 4 AMES_5997 PF17760 UvrA interaction domain AMES_5997 PF17755 UvrA DNA-binding domain AMES_5997 PF00005 ABC transporter AMES_5999 PF00753 Metallo-beta-lactamase superfamily AMES_6004 PF00027 Cyclic nucleotide-binding domain AMES_6004 PF07885 Ion channel AMES_6005 PF00075 RNase H AMES_6008 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain AMES_6008 PF00703 Glycosyl hydrolases family 2 AMES_6008 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMES_6008 PF16990 Carbohydrate binding module (family 35) AMES_6009 PF00135 Carboxylesterase family AMES_6011 PF00999 Sodium/hydrogen exchanger family AMES_6013 PF00300 Histidine phosphatase superfamily (branch 1) AMES_6014 PF05423 Mycobacterium membrane protein AMES_6016 PF00356 Bacterial regulatory proteins, lacI family AMES_6020 PF07676 WD40-like Beta Propeller Repeat AMES_6020 PF00326 Prolyl oligopeptidase family AMES_6021 PF03741 Integral membrane protein TerC family AMES_6022 PF00005 ABC transporter AMES_6027 PF00378 Enoyl-CoA hydratase/isomerase AMES_6028 PF05576 PS-10 peptidase S37 AMES_6030 PF17757 UvrB interaction domain AMES_6030 PF12344 Ultra-violet resistance protein B AMES_6030 PF00271 Helicase conserved C-terminal domain AMES_6030 PF04851 Type III restriction enzyme, res subunit AMES_6030 PF02151 UvrB/uvrC motif AMES_6034 PF04229 GrpB protein AMES_6034 PF01121 Dephospho-CoA kinase AMES_6039 PF00575 S1 RNA binding domain AMES_6040 PF08241 Methyltransferase domain AMES_6045 PF12833 Helix-turn-helix domain AMES_6045 PF02311 AraC-like ligand binding domain AMES_6046 PF08361 MAATS-type transcriptional repressor, C-terminal region AMES_6046 PF00440 Bacterial regulatory proteins, tetR family AMES_6047 PF08240 Alcohol dehydrogenase GroES-like domain AMES_6047 PF00107 Zinc-binding dehydrogenase AMES_6050 PF00476 DNA polymerase family A AMES_6050 PF01367 5'-3' exonuclease, C-terminal SAM fold AMES_6050 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AMES_6051 PF03061 Thioesterase superfamily AMES_6053 PF03466 LysR substrate binding domain AMES_6053 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMES_6055 PF02653 Branched-chain amino acid transport system / permease component AMES_6056 PF02653 Branched-chain amino acid transport system / permease component AMES_6056 PF11862 Domain of unknown function (DUF3382) AMES_6057 PF00005 ABC transporter AMES_6057 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMES_6058 PF00005 ABC transporter AMES_6060 PF00072 Response regulator receiver domain AMES_6060 PF03861 ANTAR domain AMES_6062 PF12307 Protein of unknown function (DUF3631) AMES_6070 PF00436 Single-strand binding protein family AMES_6079 PF04686 Streptomyces sporulation and cell division protein, SsgA AMES_6080 PF00293 NUDIX domain AMES_6080 PF13344 Haloacid dehalogenase-like hydrolase AMES_6091 PF12680 SnoaL-like domain AMES_6091 PF04542 Sigma-70 region 2 AMES_6091 PF08281 Sigma-70, region 4 AMES_6101 PF07730 Histidine kinase AMES_6101 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_6102 PF00196 Bacterial regulatory proteins, luxR family AMES_6102 PF00072 Response regulator receiver domain AMES_6106 PF00072 Response regulator receiver domain AMES_6106 PF00196 Bacterial regulatory proteins, luxR family AMES_6107 PF07730 Histidine kinase AMES_6111 PF01370 NAD dependent epimerase/dehydratase family AMES_6112 PF00005 ABC transporter AMES_6115 PF08281 Sigma-70, region 4 AMES_6115 PF04542 Sigma-70 region 2 AMES_6116 PF00465 Iron-containing alcohol dehydrogenase AMES_6117 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMES_6117 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMES_6118 PF00171 Aldehyde dehydrogenase family AMES_6119 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMES_6119 PF13378 Enolase C-terminal domain-like AMES_6122 PF06441 Epoxide hydrolase N terminus AMES_6126 PF12833 Helix-turn-helix domain AMES_6126 PF01965 DJ-1/PfpI family AMES_6127 PF06441 Epoxide hydrolase N terminus AMES_6129 PF00106 short chain dehydrogenase AMES_6133 PF04539 Sigma-70 region 3 AMES_6133 PF04545 Sigma-70, region 4 AMES_6133 PF04542 Sigma-70 region 2 AMES_6137 PF00291 Pyridoxal-phosphate dependent enzyme AMES_6138 PF00668 Condensation domain AMES_6138 PF00550 Phosphopantetheine attachment site AMES_6138 PF00501 AMP-binding enzyme AMES_6138 PF13193 AMP-binding enzyme C-terminal domain AMES_6139 PF00975 Thioesterase domain AMES_6140 PF00668 Condensation domain AMES_6140 PF00668 Condensation domain AMES_6140 PF13193 AMP-binding enzyme C-terminal domain AMES_6140 PF13193 AMP-binding enzyme C-terminal domain AMES_6140 PF00501 AMP-binding enzyme AMES_6140 PF00501 AMP-binding enzyme AMES_6140 PF00550 Phosphopantetheine attachment site AMES_6140 PF00550 Phosphopantetheine attachment site AMES_6141 PF08241 Methyltransferase domain AMES_6141 PF13193 AMP-binding enzyme C-terminal domain AMES_6141 PF00668 Condensation domain AMES_6141 PF00550 Phosphopantetheine attachment site AMES_6141 PF00501 AMP-binding enzyme AMES_6141 PF00391 PEP-utilising enzyme, mobile domain AMES_6141 PF00975 Thioesterase domain AMES_6142 PF13193 AMP-binding enzyme C-terminal domain AMES_6142 PF00668 Condensation domain AMES_6142 PF00550 Phosphopantetheine attachment site AMES_6142 PF00501 AMP-binding enzyme AMES_6144 PF07993 Male sterility protein AMES_6144 PF00550 Phosphopantetheine attachment site AMES_6144 PF00501 AMP-binding enzyme AMES_6144 PF13193 AMP-binding enzyme C-terminal domain AMES_6144 PF00668 Condensation domain AMES_6146 PF03621 MbtH-like protein AMES_6147 PF00975 Thioesterase domain AMES_6147 PF00550 Phosphopantetheine attachment site AMES_6147 PF00668 Condensation domain AMES_6147 PF13193 AMP-binding enzyme C-terminal domain AMES_6147 PF00501 AMP-binding enzyme AMES_6148 PF00067 Cytochrome P450 AMES_6151 PF00668 Condensation domain AMES_6151 PF00550 Phosphopantetheine attachment site AMES_6151 PF07993 Male sterility protein AMES_6151 PF00501 AMP-binding enzyme AMES_6151 PF13193 AMP-binding enzyme C-terminal domain AMES_6152 PF00501 AMP-binding enzyme AMES_6152 PF07993 Male sterility protein AMES_6152 PF13193 AMP-binding enzyme C-terminal domain AMES_6152 PF00668 Condensation domain AMES_6152 PF00550 Phosphopantetheine attachment site AMES_6153 PF00550 Phosphopantetheine attachment site AMES_6153 PF00668 Condensation domain AMES_6153 PF13193 AMP-binding enzyme C-terminal domain AMES_6153 PF00501 AMP-binding enzyme AMES_6154 PF00072 Response regulator receiver domain AMES_6154 PF00196 Bacterial regulatory proteins, luxR family AMES_6158 PF07690 Major Facilitator Superfamily AMES_6159 PF08478 POTRA domain, FtsQ-type AMES_6159 PF03799 Cell division protein FtsQ AMES_6160 PF01225 Mur ligase family, catalytic domain AMES_6160 PF02875 Mur ligase family, glutamate ligase domain AMES_6160 PF08245 Mur ligase middle domain AMES_6161 PF03033 Glycosyltransferase family 28 N-terminal domain AMES_6161 PF04101 Glycosyltransferase family 28 C-terminal domain AMES_6162 PF01098 Cell cycle protein AMES_6163 PF08245 Mur ligase middle domain AMES_6164 PF00953 Glycosyl transferase family 4 AMES_6164 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AMES_6165 PF08245 Mur ligase middle domain AMES_6165 PF01225 Mur ligase family, catalytic domain AMES_6165 PF02875 Mur ligase family, glutamate ligase domain AMES_6166 PF01225 Mur ligase family, catalytic domain AMES_6166 PF02875 Mur ligase family, glutamate ligase domain AMES_6166 PF08245 Mur ligase middle domain AMES_6167 PF00905 Penicillin binding protein transpeptidase domain AMES_6167 PF03717 Penicillin-binding Protein dimerisation domain AMES_6169 PF01795 MraW methylase family AMES_6170 PF02381 MraZ protein, putative antitoxin-like AMES_6176 PF07726 ATPase family associated with various cellular activities (AAA) AMES_6176 PF17863 AAA lid domain AMES_6178 PF01841 Transglutaminase-like superfamily AMES_6178 PF13559 Domain of unknown function (DUF4129) AMES_6178 PF11992 Domain of unknown function (DUF3488) AMES_6182 PF13614 AAA domain AMES_6183 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AMES_6183 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMES_6184 PF00962 Adenosine/AMP deaminase AMES_6186 PF01425 Amidase AMES_6187 PF01180 Dihydroorotate dehydrogenase AMES_6191 PF02464 Competence-damaged protein AMES_6191 PF18146 Damage-inducible protein CinA KH domain AMES_6191 PF00994 Probable molybdopterin binding domain AMES_6193 PF04055 Radical SAM superfamily AMES_6193 PF00919 Uncharacterized protein family UPF0004 AMES_6193 PF18693 TRAM domain AMES_6194 PF00583 Acetyltransferase (GNAT) family AMES_6200 PF01580 FtsK/SpoIIIE family AMES_6200 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AMES_6200 PF09397 Ftsk gamma domain AMES_6200 PF17854 FtsK alpha domain AMES_6202 PF03358 NADPH-dependent FMN reductase AMES_6207 PF00324 Amino acid permease AMES_6208 PF17770 Ribonuclease J C-terminal domain AMES_6208 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AMES_6208 PF12706 Beta-lactamase superfamily domain AMES_6209 PF00701 Dihydrodipicolinate synthetase family AMES_6210 PF00069 Protein kinase domain AMES_6212 PF01566 Natural resistance-associated macrophage protein AMES_6212 PF03358 NADPH-dependent FMN reductase AMES_6214 PF02511 Thymidylate synthase complementing protein AMES_6217 PF06224 Winged helix DNA-binding domain AMES_6222 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMES_6222 PF03466 LysR substrate binding domain AMES_6224 PF09084 NMT1/THI5 like AMES_6225 PF05173 Dihydrodipicolinate reductase, C-terminus AMES_6225 PF01113 Dihydrodipicolinate reductase, N-terminus AMES_6226 PF05193 Peptidase M16 inactive domain AMES_6226 PF00675 Insulinase (Peptidase family M16) AMES_6227 PF00575 S1 RNA binding domain AMES_6227 PF00013 KH domain AMES_6227 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AMES_6227 PF01138 3' exoribonuclease family, domain 1 AMES_6228 PF00312 Ribosomal protein S15 AMES_6231 PF06574 FAD synthetase AMES_6231 PF01687 Riboflavin kinase AMES_6232 PF09142 tRNA Pseudouridine synthase II, C terminal AMES_6232 PF01509 TruB family pseudouridylate synthase (N terminal domain) AMES_6232 PF16198 tRNA pseudouridylate synthase B C-terminal domain AMES_6235 PF07690 Major Facilitator Superfamily AMES_6237 PF02272 DHHA1 domain AMES_6237 PF01368 DHH family AMES_6238 PF08241 Methyltransferase domain AMES_6239 PF15975 Flotillin AMES_6239 PF01145 SPFH domain / Band 7 family AMES_6242 PF08241 Methyltransferase domain AMES_6245 PF02033 Ribosome-binding factor A AMES_6247 PF04760 Translation initiation factor IF-2, N-terminal region AMES_6247 PF00009 Elongation factor Tu GTP binding domain AMES_6247 PF11987 Translation-initiation factor 2 AMES_6249 PF13184 NusA-like KH domain AMES_6249 PF08529 NusA N-terminal domain AMES_6250 PF17384 RimP C-terminal SH3 domain AMES_6250 PF02576 RimP N-terminal domain AMES_6256 PF13977 BetI-type transcriptional repressor, C-terminal AMES_6256 PF00440 Bacterial regulatory proteins, tetR family AMES_6258 PF07730 Histidine kinase AMES_6260 PF00196 Bacterial regulatory proteins, luxR family AMES_6260 PF00072 Response regulator receiver domain AMES_6261 PF01638 HxlR-like helix-turn-helix AMES_6263 PF00440 Bacterial regulatory proteins, tetR family AMES_6264 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AMES_6264 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMES_6267 PF00072 Response regulator receiver domain AMES_6267 PF00486 Transcriptional regulatory protein, C terminal AMES_6268 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_6268 PF00512 His Kinase A (phospho-acceptor) domain AMES_6270 PF03704 Bacterial transcriptional activator domain AMES_6270 PF00931 NB-ARC domain AMES_6270 PF00486 Transcriptional regulatory protein, C terminal AMES_6274 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMES_6274 PF03466 LysR substrate binding domain AMES_6275 PF02515 CoA-transferase family III AMES_6276 PF00378 Enoyl-CoA hydratase/isomerase AMES_6277 PF06314 Acetoacetate decarboxylase (ADC) AMES_6278 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMES_6278 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMES_6279 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_6279 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_6279 PF02770 Acyl-CoA dehydrogenase, middle domain AMES_6280 PF03816 Cell envelope-related transcriptional attenuator domain AMES_6280 PF13399 LytR cell envelope-related transcriptional attenuator AMES_6281 PF00106 short chain dehydrogenase AMES_6282 PF12680 SnoaL-like domain AMES_6282 PF08281 Sigma-70, region 4 AMES_6282 PF04542 Sigma-70 region 2 AMES_6283 PF02467 Transcription factor WhiB AMES_6285 PF03466 LysR substrate binding domain AMES_6285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMES_6286 PF08281 Sigma-70, region 4 AMES_6286 PF04542 Sigma-70 region 2 AMES_6287 PF13593 SBF-like CPA transporter family (DUF4137) AMES_6289 PF07732 Multicopper oxidase AMES_6289 PF07731 Multicopper oxidase AMES_6290 PF00067 Cytochrome P450 AMES_6298 PF00931 NB-ARC domain AMES_6298 PF00486 Transcriptional regulatory protein, C terminal AMES_6298 PF03704 Bacterial transcriptional activator domain AMES_6299 PF00746 LPXTG cell wall anchor motif AMES_6299 PF17961 Bacterial Ig domain AMES_6299 PF04650 YSIRK type signal peptide AMES_6299 PF17210 SdrD B-like domain AMES_6304 PF00266 Aminotransferase class-V AMES_6306 PF00561 alpha/beta hydrolase fold AMES_6308 PF00487 Fatty acid desaturase AMES_6316 PF04542 Sigma-70 region 2 AMES_6316 PF08281 Sigma-70, region 4 AMES_6316 PF12680 SnoaL-like domain AMES_6318 PF16925 Tetracyclin repressor-like, C-terminal domain AMES_6318 PF00440 Bacterial regulatory proteins, tetR family AMES_6321 PF04616 Glycosyl hydrolases family 43 AMES_6321 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain AMES_6324 PF04542 Sigma-70 region 2 AMES_6324 PF08281 Sigma-70, region 4 AMES_6325 PF03795 YCII-related domain AMES_6326 PF00561 alpha/beta hydrolase fold AMES_6327 PF00440 Bacterial regulatory proteins, tetR family AMES_6328 PF00107 Zinc-binding dehydrogenase AMES_6328 PF08240 Alcohol dehydrogenase GroES-like domain AMES_6333 PF00012 Hsp70 protein AMES_6336 PF01979 Amidohydrolase family AMES_6338 PF00331 Glycosyl hydrolase family 10 AMES_6338 PF00652 Ricin-type beta-trefoil lectin domain AMES_6339 PF00553 Cellulose binding domain AMES_6339 PF00331 Glycosyl hydrolase family 10 AMES_6344 PF00067 Cytochrome P450 AMES_6345 PF01979 Amidohydrolase family AMES_6350 PF00196 Bacterial regulatory proteins, luxR family AMES_6350 PF00072 Response regulator receiver domain AMES_6353 PF03704 Bacterial transcriptional activator domain AMES_6356 PF01757 Acyltransferase family AMES_6364 PF00486 Transcriptional regulatory protein, C terminal AMES_6364 PF00931 NB-ARC domain AMES_6364 PF03704 Bacterial transcriptional activator domain AMES_6369 PF00248 Aldo/keto reductase family AMES_6371 PF00069 Protein kinase domain AMES_6371 PF13191 AAA ATPase domain AMES_6372 PF00111 2Fe-2S iron-sulfur cluster binding domain AMES_6372 PF01799 [2Fe-2S] binding domain AMES_6374 PF00196 Bacterial regulatory proteins, luxR family AMES_6374 PF17874 MalT-like TPR region AMES_6375 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_6375 PF02770 Acyl-CoA dehydrogenase, middle domain AMES_6375 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_6376 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus AMES_6377 PF00561 alpha/beta hydrolase fold AMES_6378 PF00561 alpha/beta hydrolase fold AMES_6379 PF13193 AMP-binding enzyme C-terminal domain AMES_6379 PF00501 AMP-binding enzyme AMES_6381 PF12697 Alpha/beta hydrolase family AMES_6382 PF00196 Bacterial regulatory proteins, luxR family AMES_6382 PF00072 Response regulator receiver domain AMES_6383 PF00196 Bacterial regulatory proteins, luxR family AMES_6384 PF07690 Major Facilitator Superfamily AMES_6387 PF07690 Major Facilitator Superfamily AMES_6387 PF00083 Sugar (and other) transporter AMES_6395 PF00005 ABC transporter AMES_6397 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_6397 PF07730 Histidine kinase AMES_6398 PF00196 Bacterial regulatory proteins, luxR family AMES_6398 PF00072 Response regulator receiver domain AMES_6401 PF09335 SNARE associated Golgi protein AMES_6403 PF02673 Bacitracin resistance protein BacA AMES_6409 PF00005 ABC transporter AMES_6411 PF07730 Histidine kinase AMES_6412 PF00196 Bacterial regulatory proteins, luxR family AMES_6412 PF00072 Response regulator receiver domain AMES_6415 PF00440 Bacterial regulatory proteins, tetR family AMES_6415 PF08359 YsiA-like protein, C-terminal region AMES_6417 PF01370 NAD dependent epimerase/dehydratase family AMES_6418 PF05368 NmrA-like family AMES_6421 PF07859 alpha/beta hydrolase fold AMES_6422 PF07859 alpha/beta hydrolase fold AMES_6423 PF07690 Major Facilitator Superfamily AMES_6424 PF00106 short chain dehydrogenase AMES_6428 PF12833 Helix-turn-helix domain AMES_6428 PF01965 DJ-1/PfpI family AMES_6433 PF00403 Heavy-metal-associated domain AMES_6435 PF04542 Sigma-70 region 2 AMES_6435 PF08281 Sigma-70, region 4 AMES_6436 PF04542 Sigma-70 region 2 AMES_6436 PF08281 Sigma-70, region 4 AMES_6438 PF01965 DJ-1/PfpI family AMES_6439 PF00005 ABC transporter AMES_6440 PF01032 FecCD transport family AMES_6443 PF00403 Heavy-metal-associated domain AMES_6463 PF01568 Molydopterin dinucleotide binding domain AMES_6463 PF00384 Molybdopterin oxidoreductase AMES_6463 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMES_6464 PF08240 Alcohol dehydrogenase GroES-like domain AMES_6464 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AMES_6466 PF02801 Beta-ketoacyl synthase, C-terminal domain AMES_6466 PF00109 Beta-ketoacyl synthase, N-terminal domain AMES_6466 PF09277 Erythronolide synthase, docking AMES_6466 PF16197 Ketoacyl-synthetase C-terminal extension AMES_6466 PF08990 Erythronolide synthase docking AMES_6466 PF08659 KR domain AMES_6466 PF14765 Polyketide synthase dehydratase AMES_6466 PF00698 Acyl transferase domain AMES_6466 PF00550 Phosphopantetheine attachment site AMES_6466 PF08240 Alcohol dehydrogenase GroES-like domain AMES_6469 PF00171 Aldehyde dehydrogenase family AMES_6471 PF00205 Thiamine pyrophosphate enzyme, central domain AMES_6471 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMES_6471 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMES_6472 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMES_6472 PF13378 Enolase C-terminal domain-like AMES_6473 PF02913 FAD linked oxidases, C-terminal domain AMES_6473 PF13183 4Fe-4S dicluster domain AMES_6473 PF01565 FAD binding domain AMES_6476 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMES_6476 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMES_6477 PF00871 Acetokinase family AMES_6478 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase AMES_6478 PF09364 XFP N-terminal domain AMES_6478 PF09363 XFP C-terminal domain AMES_6480 PF04454 Encapsulating protein for peroxidase AMES_6481 PF00107 Zinc-binding dehydrogenase AMES_6481 PF13823 Alcohol dehydrogenase GroES-associated AMES_6481 PF08240 Alcohol dehydrogenase GroES-like domain AMES_6483 PF03600 Citrate transporter AMES_6484 PF00005 ABC transporter AMES_6488 PF08275 DNA primase catalytic core, N-terminal domain AMES_6488 PF13662 Toprim domain AMES_6488 PF01807 CHC2 zinc finger AMES_6488 PF08278 DNA primase DnaG DnaB-binding AMES_6488 PF10410 DnaB-helicase binding domain of primase AMES_6490 PF04542 Sigma-70 region 2 AMES_6490 PF12680 SnoaL-like domain AMES_6490 PF08281 Sigma-70, region 4 AMES_6492 PF07690 Major Facilitator Superfamily AMES_6496 PF04978 Protein of unknown function (DUF664) AMES_6499 PF13286 Phosphohydrolase-associated domain AMES_6499 PF01966 HD domain AMES_6501 PF00196 Bacterial regulatory proteins, luxR family AMES_6501 PF00072 Response regulator receiver domain AMES_6502 PF07730 Histidine kinase AMES_6504 PF00005 ABC transporter AMES_6505 PF03129 Anticodon binding domain AMES_6505 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMES_6509 PF01022 Bacterial regulatory protein, arsR family AMES_6511 PF01475 Ferric uptake regulator family AMES_6513 PF03773 Predicted permease AMES_6515 PF01255 Putative undecaprenyl diphosphate synthase AMES_6516 PF02565 Recombination protein O C terminal AMES_6516 PF11967 Recombination protein O N terminal AMES_6518 PF06271 RDD family AMES_6522 PF07650 KH domain AMES_6522 PF01926 50S ribosome-binding GTPase AMES_6524 PF03471 Transporter associated domain AMES_6524 PF01595 Cyclin M transmembrane N-terminal domain AMES_6524 PF00571 CBS domain AMES_6525 PF02130 Uncharacterized protein family UPF0054 AMES_6526 PF02562 PhoH-like protein AMES_6527 PF01230 HIT domain AMES_6528 PF04452 RNA methyltransferase AMES_6529 PF00226 DnaJ domain AMES_6529 PF01556 DnaJ C terminal domain AMES_6529 PF00684 DnaJ central domain AMES_6530 PF01628 HrcA protein C terminal domain AMES_6534 PF00248 Aldo/keto reductase family AMES_6536 PF00171 Aldehyde dehydrogenase family AMES_6542 PF00512 His Kinase A (phospho-acceptor) domain AMES_6542 PF00672 HAMP domain AMES_6542 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_6543 PF00072 Response regulator receiver domain AMES_6543 PF00486 Transcriptional regulatory protein, C terminal AMES_6544 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AMES_6546 PF01979 Amidohydrolase family AMES_6548 PF00144 Beta-lactamase AMES_6549 PF00561 alpha/beta hydrolase fold AMES_6550 PF04954 Siderophore-interacting protein AMES_6550 PF08021 Siderophore-interacting FAD-binding domain AMES_6553 PF02909 Tetracyclin repressor-like, C-terminal domain AMES_6553 PF00440 Bacterial regulatory proteins, tetR family AMES_6554 PF08240 Alcohol dehydrogenase GroES-like domain AMES_6554 PF00107 Zinc-binding dehydrogenase AMES_6555 PF04055 Radical SAM superfamily AMES_6557 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMES_6557 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMES_6559 PF01507 Phosphoadenosine phosphosulfate reductase family AMES_6560 PF01507 Phosphoadenosine phosphosulfate reductase family AMES_6561 PF00009 Elongation factor Tu GTP binding domain AMES_6564 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_6564 PF00183 Hsp90 protein AMES_6567 PF00378 Enoyl-CoA hydratase/isomerase AMES_6568 PF01337 Barstar (barnase inhibitor) AMES_6569 PF00545 ribonuclease AMES_6571 PF08240 Alcohol dehydrogenase GroES-like domain AMES_6571 PF00107 Zinc-binding dehydrogenase AMES_6573 PF03060 Nitronate monooxygenase AMES_6574 PF13520 Amino acid permease AMES_6576 PF00728 Glycosyl hydrolase family 20, catalytic domain AMES_6576 PF02838 Glycosyl hydrolase family 20, domain 2 AMES_6582 PF00679 Elongation factor G C-terminus AMES_6582 PF06421 GTP-binding protein LepA C-terminus AMES_6582 PF00009 Elongation factor Tu GTP binding domain AMES_6584 PF01209 ubiE/COQ5 methyltransferase family AMES_6586 PF01649 Ribosomal protein S20 AMES_6588 PF00291 Pyridoxal-phosphate dependent enzyme AMES_6590 PF13567 Domain of unknown function (DUF4131) AMES_6590 PF03772 Competence protein AMES_6590 PF00753 Metallo-beta-lactamase superfamily AMES_6592 PF02645 Uncharacterised protein, DegV family COG1307 AMES_6594 PF00300 Histidine phosphatase superfamily (branch 1) AMES_6596 PF01467 Cytidylyltransferase-like AMES_6597 PF00271 Helicase conserved C-terminal domain AMES_6597 PF00270 DEAD/DEAH box helicase AMES_6597 PF16124 RecQ zinc-binding AMES_6597 PF00570 HRDC domain AMES_6597 PF09382 RQC domain AMES_6598 PF00083 Sugar (and other) transporter AMES_6599 PF00750 tRNA synthetases class I (R) AMES_6599 PF05746 DALR anticodon binding domain AMES_6599 PF03485 Arginyl tRNA synthetase N terminal domain AMES_6601 PF00440 Bacterial regulatory proteins, tetR family AMES_6601 PF16859 Tetracyclin repressor-like, C-terminal domain AMES_6604 PF01472 PUA domain AMES_6604 PF00696 Amino acid kinase family AMES_6605 PF09269 Domain of unknown function (DUF1967) AMES_6605 PF01018 GTP1/OBG AMES_6605 PF01926 50S ribosome-binding GTPase AMES_6606 PF01016 Ribosomal L27 protein AMES_6607 PF00829 Ribosomal prokaryotic L21 protein AMES_6608 PF10150 Ribonuclease E/G family AMES_6608 PF10150 Ribonuclease E/G family AMES_6609 PF00082 Subtilase family AMES_6610 PF01061 ABC-2 type transporter AMES_6612 PF00005 ABC transporter AMES_6615 PF00334 Nucleoside diphosphate kinase AMES_6617 PF01804 Penicillin amidase AMES_6619 PF02875 Mur ligase family, glutamate ligase domain AMES_6619 PF08245 Mur ligase middle domain AMES_6620 PF08241 Methyltransferase domain AMES_6622 PF13472 GDSL-like Lipase/Acylhydrolase family AMES_6623 PF12697 Alpha/beta hydrolase family AMES_6624 PF03466 LysR substrate binding domain AMES_6624 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMES_6625 PF00133 tRNA synthetases class I (I, L, M and V) AMES_6625 PF08264 Anticodon-binding domain of tRNA AMES_6625 PF10458 Valyl tRNA synthetase tRNA binding arm AMES_6627 PF12802 MarR family AMES_6628 PF07690 Major Facilitator Superfamily AMES_6630 PF00384 Molybdopterin oxidoreductase AMES_6630 PF01568 Molydopterin dinucleotide binding domain AMES_6631 PF03816 Cell envelope-related transcriptional attenuator domain AMES_6631 PF13399 LytR cell envelope-related transcriptional attenuator AMES_6633 PF03055 Retinal pigment epithelial membrane protein AMES_6634 PF02634 FdhD/NarQ family AMES_6639 PF10431 C-terminal, D2-small domain, of ClpB protein AMES_6639 PF07724 AAA domain (Cdc48 subfamily) AMES_6639 PF06689 ClpX C4-type zinc finger AMES_6640 PF00574 Clp protease AMES_6641 PF00574 Clp protease AMES_6642 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMES_6642 PF05698 Bacterial trigger factor protein (TF) C-terminus AMES_6642 PF05697 Bacterial trigger factor protein (TF) AMES_6644 PF00111 2Fe-2S iron-sulfur cluster binding domain AMES_6644 PF00175 Oxidoreductase NAD-binding domain AMES_6644 PF00970 Oxidoreductase FAD-binding domain AMES_6646 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_6646 PF00512 His Kinase A (phospho-acceptor) domain AMES_6646 PF00672 HAMP domain AMES_6647 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase AMES_6650 PF02769 AIR synthase related protein, C-terminal domain AMES_6650 PF00586 AIR synthase related protein, N-terminal domain AMES_6651 PF00692 dUTPase AMES_6658 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase AMES_6667 PF07971 Glycosyl hydrolase family 92 AMES_6667 PF17678 Glycosyl hydrolase family 92 N-terminal domain AMES_6668 PF01979 Amidohydrolase family AMES_6668 PF13382 Adenine deaminase C-terminal domain AMES_6670 PF00005 ABC transporter AMES_6670 PF13732 Domain of unknown function (DUF4162) AMES_6671 PF00440 Bacterial regulatory proteins, tetR family AMES_6671 PF17933 Tetracyclin repressor-like, C-terminal domain AMES_6673 PF00480 ROK family AMES_6674 PF01261 Xylose isomerase-like TIM barrel AMES_6677 PF07690 Major Facilitator Superfamily AMES_6678 PF00248 Aldo/keto reductase family AMES_6683 PF01965 DJ-1/PfpI family AMES_6684 PF07228 Stage II sporulation protein E (SpoIIE) AMES_6684 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain AMES_6685 PF00072 Response regulator receiver domain AMES_6685 PF00512 His Kinase A (phospho-acceptor) domain AMES_6685 PF09308 LuxQ, periplasmic AMES_6685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_6690 PF01381 Helix-turn-helix AMES_6694 PF03466 LysR substrate binding domain AMES_6694 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMES_6698 PF00296 Luciferase-like monooxygenase AMES_6701 PF01638 HxlR-like helix-turn-helix AMES_6702 PF16499 Alpha galactosidase A AMES_6702 PF17801 Alpha galactosidase C-terminal beta sandwich domain AMES_6703 PF12680 SnoaL-like domain AMES_6704 PF00296 Luciferase-like monooxygenase AMES_6707 PF00118 TCP-1/cpn60 chaperonin family AMES_6708 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AMES_6708 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMES_6708 PF06827 Zinc finger found in FPG and IleRS AMES_6709 PF02502 Ribose/Galactose Isomerase AMES_6712 PF01323 DSBA-like thioredoxin domain AMES_6713 PF11838 ERAP1-like C-terminal domain AMES_6713 PF01433 Peptidase family M1 domain AMES_6715 PF17174 Domain of unknown function (DUF5130) AMES_6719 PF00924 Mechanosensitive ion channel AMES_6720 PF01152 Bacterial-like globin AMES_6721 PF00128 Alpha amylase, catalytic domain AMES_6725 PF05088 Bacterial NAD-glutamate dehydrogenase AMES_6727 PF12848 ABC transporter AMES_6727 PF00005 ABC transporter AMES_6728 PF05425 Copper resistance protein D AMES_6728 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) AMES_6731 PF07690 Major Facilitator Superfamily AMES_6733 PF00202 Aminotransferase class-III AMES_6734 PF00732 GMC oxidoreductase AMES_6734 PF05199 GMC oxidoreductase AMES_6738 PF05199 GMC oxidoreductase AMES_6738 PF00732 GMC oxidoreductase AMES_6741 PF00578 AhpC/TSA family AMES_6745 PF00171 Aldehyde dehydrogenase family AMES_6746 PF07690 Major Facilitator Superfamily AMES_6747 PF06441 Epoxide hydrolase N terminus AMES_6751 PF01494 FAD binding domain AMES_6755 PF01039 Carboxyl transferase domain AMES_6756 PF16363 GDP-mannose 4,6 dehydratase AMES_6757 PF01613 Flavin reductase like domain AMES_6759 PF16197 Ketoacyl-synthetase C-terminal extension AMES_6759 PF00698 Acyl transferase domain AMES_6759 PF08659 KR domain AMES_6759 PF00550 Phosphopantetheine attachment site AMES_6759 PF02801 Beta-ketoacyl synthase, C-terminal domain AMES_6759 PF00109 Beta-ketoacyl synthase, N-terminal domain AMES_6760 PF08608 Wyosine base formation AMES_6760 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AMES_6762 PF05199 GMC oxidoreductase AMES_6764 PF00067 Cytochrome P450 AMES_6769 PF12833 Helix-turn-helix domain AMES_6771 PF01638 HxlR-like helix-turn-helix AMES_6772 PF08281 Sigma-70, region 4 AMES_6772 PF04542 Sigma-70 region 2 AMES_6773 PF03795 YCII-related domain AMES_6775 PF01300 Telomere recombination AMES_6778 PF00072 Response regulator receiver domain AMES_6778 PF00196 Bacterial regulatory proteins, luxR family AMES_6779 PF12833 Helix-turn-helix domain AMES_6779 PF02311 AraC-like ligand binding domain AMES_6780 PF00072 Response regulator receiver domain AMES_6780 PF00196 Bacterial regulatory proteins, luxR family AMES_6781 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_6781 PF07730 Histidine kinase AMES_6784 PF01638 HxlR-like helix-turn-helix AMES_6789 PF02583 Metal-sensitive transcriptional repressor AMES_6791 PF00403 Heavy-metal-associated domain AMES_6793 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMES_6794 PF00561 alpha/beta hydrolase fold AMES_6795 PF00106 short chain dehydrogenase AMES_6798 PF04055 Radical SAM superfamily AMES_6802 PF07859 alpha/beta hydrolase fold AMES_6807 PF00486 Transcriptional regulatory protein, C terminal AMES_6807 PF00072 Response regulator receiver domain AMES_6808 PF00512 His Kinase A (phospho-acceptor) domain AMES_6808 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_6808 PF00672 HAMP domain AMES_6810 PF00356 Bacterial regulatory proteins, lacI family AMES_6811 PF13416 Bacterial extracellular solute-binding protein AMES_6812 PF00528 Binding-protein-dependent transport system inner membrane component AMES_6813 PF00528 Binding-protein-dependent transport system inner membrane component AMES_6815 PF00486 Transcriptional regulatory protein, C terminal AMES_6815 PF00931 NB-ARC domain AMES_6815 PF03704 Bacterial transcriptional activator domain AMES_6817 PF13537 Glutamine amidotransferase domain AMES_6817 PF00733 Asparagine synthase AMES_6818 PF00480 ROK family AMES_6822 PF03466 LysR substrate binding domain AMES_6822 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMES_6826 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMES_6826 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMES_6830 PF00356 Bacterial regulatory proteins, lacI family AMES_6834 PF00072 Response regulator receiver domain AMES_6834 PF00486 Transcriptional regulatory protein, C terminal AMES_6835 PF00512 His Kinase A (phospho-acceptor) domain AMES_6835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_6837 PF13520 Amino acid permease AMES_6838 PF00795 Carbon-nitrogen hydrolase AMES_6839 PF01593 Flavin containing amine oxidoreductase AMES_6842 PF00561 alpha/beta hydrolase fold AMES_6844 PF17853 GGDEF-like domain AMES_6844 PF05651 Putative sugar diacid recognition AMES_6844 PF13556 PucR C-terminal helix-turn-helix domain AMES_6848 PF00108 Thiolase, N-terminal domain AMES_6848 PF02803 Thiolase, C-terminal domain AMES_6849 PF00501 AMP-binding enzyme AMES_6849 PF13193 AMP-binding enzyme C-terminal domain AMES_6850 PF03055 Retinal pigment epithelial membrane protein AMES_6851 PF01638 HxlR-like helix-turn-helix AMES_6855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMES_6855 PF03466 LysR substrate binding domain AMES_6856 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMES_6856 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AMES_6858 PF03301 Tryptophan 2,3-dioxygenase AMES_6860 PF02633 Creatinine amidohydrolase AMES_6861 PF00501 AMP-binding enzyme AMES_6861 PF13193 AMP-binding enzyme C-terminal domain AMES_6863 PF00378 Enoyl-CoA hydratase/isomerase AMES_6871 PF00106 short chain dehydrogenase AMES_6873 PF00196 Bacterial regulatory proteins, luxR family AMES_6875 PF13193 AMP-binding enzyme C-terminal domain AMES_6875 PF00501 AMP-binding enzyme AMES_6878 PF04408 Helicase associated domain (HA2) AMES_6878 PF11898 Domain of unknown function (DUF3418) AMES_6878 PF00271 Helicase conserved C-terminal domain AMES_6878 PF00270 DEAD/DEAH box helicase AMES_6878 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AMES_6880 PF01070 FMN-dependent dehydrogenase AMES_6881 PF00743 Flavin-binding monooxygenase-like AMES_6882 PF03435 Saccharopine dehydrogenase NADP binding domain AMES_6884 PF01374 Glycosyl hydrolase family 46 AMES_6885 PF14791 DNA polymerase beta thumb AMES_6885 PF14716 Helix-hairpin-helix domain AMES_6885 PF02811 PHP domain AMES_6887 PF07729 FCD domain AMES_6887 PF00392 Bacterial regulatory proteins, gntR family AMES_6888 PF00920 Dehydratase family AMES_6892 PF00990 Diguanylate cyclase, GGDEF domain AMES_6894 PF00291 Pyridoxal-phosphate dependent enzyme AMES_6895 PF01738 Dienelactone hydrolase family AMES_6897 PF08281 Sigma-70, region 4 AMES_6897 PF04542 Sigma-70 region 2 AMES_6901 PF01176 Translation initiation factor 1A / IF-1 AMES_6904 PF00392 Bacterial regulatory proteins, gntR family AMES_6904 PF00155 Aminotransferase class I and II AMES_6906 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AMES_6906 PF06827 Zinc finger found in FPG and IleRS AMES_6906 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMES_6907 PF02585 GlcNAc-PI de-N-acetylase AMES_6908 PF01008 Initiation factor 2 subunit family AMES_6908 PF00596 Class II Aldolase and Adducin N-terminal domain AMES_6910 PF00067 Cytochrome P450 AMES_6911 PF03551 Transcriptional regulator PadR-like family AMES_6911 PF10400 Virulence activator alpha C-term AMES_6912 PF00067 Cytochrome P450 AMES_6913 PF00456 Transketolase, thiamine diphosphate binding domain AMES_6914 PF17932 Tetracyclin repressor-like, C-terminal domain AMES_6914 PF00440 Bacterial regulatory proteins, tetR family AMES_6915 PF02913 FAD linked oxidases, C-terminal domain AMES_6915 PF13183 4Fe-4S dicluster domain AMES_6915 PF01565 FAD binding domain AMES_6917 PF00196 Bacterial regulatory proteins, luxR family AMES_6917 PF00072 Response regulator receiver domain AMES_6919 PF00005 ABC transporter AMES_6920 PF00005 ABC transporter AMES_6920 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMES_6921 PF02653 Branched-chain amino acid transport system / permease component AMES_6922 PF02653 Branched-chain amino acid transport system / permease component AMES_6925 PF17678 Glycosyl hydrolase family 92 N-terminal domain AMES_6925 PF07971 Glycosyl hydrolase family 92 AMES_6926 PF13302 Acetyltransferase (GNAT) domain AMES_6927 PF09186 Domain of unknown function (DUF1949) AMES_6927 PF01205 Uncharacterized protein family UPF0029 AMES_6928 PF01493 GXGXG motif AMES_6928 PF00310 Glutamine amidotransferases class-II AMES_6928 PF04898 Glutamate synthase central domain AMES_6928 PF01645 Conserved region in glutamate synthase AMES_6929 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMES_6929 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AMES_6930 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family AMES_6931 PF00440 Bacterial regulatory proteins, tetR family AMES_6933 PF00480 ROK family AMES_6936 PF07685 CobB/CobQ-like glutamine amidotransferase domain AMES_6936 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMES_6937 PF03186 CobD/Cbib protein AMES_6938 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AMES_6939 PF02277 Phosphoribosyltransferase AMES_6940 PF02654 Cobalamin-5-phosphate synthase AMES_6942 PF08279 HTH domain AMES_6942 PF13280 WYL domain AMES_6943 PF00155 Aminotransferase class I and II AMES_6944 PF07685 CobB/CobQ-like glutamine amidotransferase domain AMES_6944 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMES_6946 PF07728 AAA domain (dynein-related subfamily) AMES_6946 PF13519 von Willebrand factor type A domain AMES_6946 PF17863 AAA lid domain AMES_6947 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMES_6948 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMES_6949 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMES_6949 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMES_6950 PF02571 Precorrin-6x reductase CbiJ/CobK AMES_6951 PF00881 Nitroreductase family AMES_6952 PF14896 EmbC C-terminal domain AMES_6952 PF17689 Arabinosyltransferase concanavalin like domain AMES_6952 PF04602 Mycobacterial cell wall arabinan synthesis protein AMES_6953 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMES_6954 PF02570 Precorrin-8X methylmutase AMES_6957 PF00005 ABC transporter AMES_6960 PF01381 Helix-turn-helix AMES_6961 PF02514 CobN/Magnesium Chelatase AMES_6963 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMES_6963 PF01872 RibD C-terminal domain AMES_6966 PF00171 Aldehyde dehydrogenase family AMES_6971 PF00595 PDZ domain AMES_6971 PF13180 PDZ domain AMES_6973 PF05872 Bacterial protein of unknown function (DUF853) AMES_6974 PF00929 Exonuclease AMES_6975 PF03734 L,D-transpeptidase catalytic domain AMES_6975 PF17964 Bacterial Ig domain AMES_6976 PF08946 Osmosensory transporter coiled coil AMES_6976 PF00083 Sugar (and other) transporter AMES_6977 PF02899 Phage integrase, N-terminal SAM-like domain AMES_6977 PF00589 Phage integrase family AMES_6979 PF01555 DNA methylase AMES_6980 PF01555 DNA methylase AMES_6993 PF01494 FAD binding domain AMES_7008 PF00293 NUDIX domain AMES_7012 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_7012 PF02770 Acyl-CoA dehydrogenase, middle domain AMES_7012 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_7013 PF08240 Alcohol dehydrogenase GroES-like domain AMES_7013 PF00107 Zinc-binding dehydrogenase AMES_7014 PF02779 Transketolase, pyrimidine binding domain AMES_7014 PF02780 Transketolase, C-terminal domain AMES_7015 PF00501 AMP-binding enzyme AMES_7015 PF13193 AMP-binding enzyme C-terminal domain AMES_7017 PF00378 Enoyl-CoA hydratase/isomerase AMES_7020 PF07690 Major Facilitator Superfamily AMES_7022 PF03328 HpcH/HpaI aldolase/citrate lyase family AMES_7023 PF00296 Luciferase-like monooxygenase AMES_7024 PF00392 Bacterial regulatory proteins, gntR family AMES_7024 PF07729 FCD domain AMES_7025 PF00171 Aldehyde dehydrogenase family AMES_7026 PF02515 CoA-transferase family III AMES_7030 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMES_7032 PF00067 Cytochrome P450 AMES_7034 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMES_7034 PF14759 Reductase C-terminal AMES_7035 PF00106 short chain dehydrogenase AMES_7036 PF02627 Carboxymuconolactone decarboxylase family AMES_7038 PF00440 Bacterial regulatory proteins, tetR family AMES_7040 PF00107 Zinc-binding dehydrogenase AMES_7040 PF08240 Alcohol dehydrogenase GroES-like domain AMES_7045 PF00005 ABC transporter AMES_7046 PF00005 ABC transporter AMES_7046 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMES_7049 PF02770 Acyl-CoA dehydrogenase, middle domain AMES_7049 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_7049 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_7050 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_7050 PF02770 Acyl-CoA dehydrogenase, middle domain AMES_7050 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_7051 PF00106 short chain dehydrogenase AMES_7052 PF07729 FCD domain AMES_7052 PF00392 Bacterial regulatory proteins, gntR family AMES_7055 PF14765 Polyketide synthase dehydratase AMES_7055 PF08240 Alcohol dehydrogenase GroES-like domain AMES_7055 PF00698 Acyl transferase domain AMES_7055 PF00107 Zinc-binding dehydrogenase AMES_7055 PF16197 Ketoacyl-synthetase C-terminal extension AMES_7055 PF00109 Beta-ketoacyl synthase, N-terminal domain AMES_7055 PF02801 Beta-ketoacyl synthase, C-terminal domain AMES_7055 PF08659 KR domain AMES_7055 PF00550 Phosphopantetheine attachment site AMES_7056 PF02770 Acyl-CoA dehydrogenase, middle domain AMES_7056 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_7056 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_7057 PF02770 Acyl-CoA dehydrogenase, middle domain AMES_7057 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_7057 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_7059 PF00067 Cytochrome P450 AMES_7060 PF00378 Enoyl-CoA hydratase/isomerase AMES_7062 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_7062 PF02770 Acyl-CoA dehydrogenase, middle domain AMES_7062 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_7065 PF02515 CoA-transferase family III AMES_7073 PF00890 FAD binding domain AMES_7074 PF09339 IclR helix-turn-helix domain AMES_7074 PF01614 Bacterial transcriptional regulator AMES_7075 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMES_7076 PF00561 alpha/beta hydrolase fold AMES_7077 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AMES_7078 PF01613 Flavin reductase like domain AMES_7080 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AMES_7080 PF01243 Pyridoxamine 5'-phosphate oxidase AMES_7081 PF02803 Thiolase, C-terminal domain AMES_7081 PF00108 Thiolase, N-terminal domain AMES_7082 PF02515 CoA-transferase family III AMES_7083 PF00378 Enoyl-CoA hydratase/isomerase AMES_7084 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_7084 PF02770 Acyl-CoA dehydrogenase, middle domain AMES_7084 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_7085 PF00106 short chain dehydrogenase AMES_7088 PF00501 AMP-binding enzyme AMES_7088 PF13193 AMP-binding enzyme C-terminal domain AMES_7090 PF00378 Enoyl-CoA hydratase/isomerase AMES_7091 PF02803 Thiolase, C-terminal domain AMES_7091 PF00108 Thiolase, N-terminal domain AMES_7092 PF00378 Enoyl-CoA hydratase/isomerase AMES_7095 PF02515 CoA-transferase family III AMES_7097 PF00378 Enoyl-CoA hydratase/isomerase AMES_7098 PF00809 Pterin binding enzyme AMES_7101 PF00171 Aldehyde dehydrogenase family AMES_7102 PF00067 Cytochrome P450 AMES_7104 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMES_7104 PF14759 Reductase C-terminal AMES_7105 PF00106 short chain dehydrogenase AMES_7106 PF00743 Flavin-binding monooxygenase-like AMES_7107 PF00743 Flavin-binding monooxygenase-like AMES_7111 PF00857 Isochorismatase family AMES_7114 PF00440 Bacterial regulatory proteins, tetR family AMES_7114 PF08361 MAATS-type transcriptional repressor, C-terminal region AMES_7116 PF02779 Transketolase, pyrimidine binding domain AMES_7116 PF02780 Transketolase, C-terminal domain AMES_7119 PF00067 Cytochrome P450 AMES_7120 PF14759 Reductase C-terminal AMES_7120 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMES_7122 PF08240 Alcohol dehydrogenase GroES-like domain AMES_7122 PF00107 Zinc-binding dehydrogenase AMES_7124 PF07730 Histidine kinase AMES_7125 PF00196 Bacterial regulatory proteins, luxR family AMES_7125 PF00072 Response regulator receiver domain AMES_7126 PF00501 AMP-binding enzyme AMES_7127 PF00501 AMP-binding enzyme AMES_7129 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMES_7129 PF13378 Enolase C-terminal domain-like AMES_7130 PF07690 Major Facilitator Superfamily AMES_7136 PF00596 Class II Aldolase and Adducin N-terminal domain AMES_7137 PF07690 Major Facilitator Superfamily AMES_7137 PF00083 Sugar (and other) transporter AMES_7143 PF03928 Haem-degrading AMES_7144 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMES_7144 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMES_7146 PF00356 Bacterial regulatory proteins, lacI family AMES_7147 PF01547 Bacterial extracellular solute-binding protein AMES_7148 PF00528 Binding-protein-dependent transport system inner membrane component AMES_7149 PF00528 Binding-protein-dependent transport system inner membrane component AMES_7151 PF00561 alpha/beta hydrolase fold AMES_7152 PF00392 Bacterial regulatory proteins, gntR family AMES_7152 PF07729 FCD domain AMES_7153 PF00561 alpha/beta hydrolase fold AMES_7156 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMES_7156 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMES_7157 PF00933 Glycosyl hydrolase family 3 N terminal domain AMES_7157 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMES_7157 PF07691 PA14 domain AMES_7157 PF14310 Fibronectin type III-like domain AMES_7158 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMES_7158 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMES_7158 PF01842 ACT domain AMES_7159 PF08546 Ketopantoate reductase PanE/ApbA C terminal AMES_7159 PF02558 Ketopantoate reductase PanE/ApbA AMES_7160 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMES_7160 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMES_7160 PF00378 Enoyl-CoA hydratase/isomerase AMES_7161 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AMES_7161 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AMES_7164 PF02515 CoA-transferase family III AMES_7165 PF02798 Glutathione S-transferase, N-terminal domain AMES_7165 PF00043 Glutathione S-transferase, C-terminal domain AMES_7167 PF07690 Major Facilitator Superfamily AMES_7168 PF05681 Fumarate hydratase (Fumerase) AMES_7170 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMES_7170 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMES_7180 PF02195 ParB-like nuclease domain AMES_7180 PF17762 HTH domain found in ParB protein AMES_7183 PF11774 Lsr2 AMES_7202 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMES_7204 PF00809 Pterin binding enzyme AMES_7212 PF06114 IrrE N-terminal-like domain AMES_7218 PF01370 NAD dependent epimerase/dehydratase family AMES_7223 PF04055 Radical SAM superfamily AMES_7224 PF04055 Radical SAM superfamily AMES_7225 PF00296 Luciferase-like monooxygenase AMES_7227 PF12833 Helix-turn-helix domain AMES_7227 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMES_7227 PF02805 Metal binding domain of Ada AMES_7227 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AMES_7228 PF00067 Cytochrome P450 AMES_7229 PF08281 Sigma-70, region 4 AMES_7229 PF12680 SnoaL-like domain AMES_7229 PF04542 Sigma-70 region 2 AMES_7230 PF08031 Berberine and berberine like AMES_7230 PF01565 FAD binding domain AMES_7231 PF00296 Luciferase-like monooxygenase AMES_7233 PF07690 Major Facilitator Superfamily AMES_7244 PF12833 Helix-turn-helix domain AMES_7244 PF12852 Cupin AMES_7245 PF00156 Phosphoribosyl transferase domain AMES_7251 PF00528 Binding-protein-dependent transport system inner membrane component AMES_7252 PF00528 Binding-protein-dependent transport system inner membrane component AMES_7253 PF00005 ABC transporter AMES_7254 PF12849 PBP superfamily domain AMES_7257 PF00440 Bacterial regulatory proteins, tetR family AMES_7258 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AMES_7258 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_7262 PF01425 Amidase AMES_7265 PF03466 LysR substrate binding domain AMES_7265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMES_7268 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMES_7268 PF00933 Glycosyl hydrolase family 3 N terminal domain AMES_7268 PF14310 Fibronectin type III-like domain AMES_7269 PF01370 NAD dependent epimerase/dehydratase family AMES_7269 PF08338 Domain of unknown function (DUF1731) AMES_7271 PF00150 Cellulase (glycosyl hydrolase family 5) AMES_7273 PF00005 ABC transporter AMES_7274 PF00759 Glycosyl hydrolase family 9 AMES_7274 PF02927 Cellulase N-terminal ig-like domain AMES_7274 PF02018 Carbohydrate binding domain AMES_7275 PF17801 Alpha galactosidase C-terminal beta sandwich domain AMES_7275 PF16499 Alpha galactosidase A AMES_7284 PF00534 Glycosyl transferases group 1 AMES_7288 PF00534 Glycosyl transferases group 1 AMES_7288 PF13439 Glycosyltransferase Family 4 AMES_7289 PF00534 Glycosyl transferases group 1 AMES_7289 PF13439 Glycosyltransferase Family 4 AMES_7291 PF02397 Bacterial sugar transferase AMES_7292 PF00535 Glycosyl transferase family 2 AMES_7293 PF02350 UDP-N-acetylglucosamine 2-epimerase AMES_7298 PF13229 Right handed beta helix region AMES_7299 PF16355 Domain of unknown function (DUF4982) AMES_7299 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMES_7299 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMES_7299 PF00703 Glycosyl hydrolases family 2 AMES_7299 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 AMES_7300 PF18370 Rhamnogalacturonan I lyases beta-sheet domain AMES_7302 PF02013 Cellulose or protein binding domain AMES_7302 PF00150 Cellulase (glycosyl hydrolase family 5) AMES_7303 PF07745 Glycosyl hydrolase family 53 AMES_7306 PF00528 Binding-protein-dependent transport system inner membrane component AMES_7307 PF00528 Binding-protein-dependent transport system inner membrane component AMES_7312 PF01740 STAS domain AMES_7315 PF12697 Alpha/beta hydrolase family AMES_7316 PF00672 HAMP domain AMES_7316 PF07228 Stage II sporulation protein E (SpoIIE) AMES_7318 PF00701 Dihydrodipicolinate synthetase family AMES_7319 PF01209 ubiE/COQ5 methyltransferase family AMES_7320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMES_7320 PF03466 LysR substrate binding domain AMES_7322 PF01380 SIS domain AMES_7324 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMES_7324 PF14759 Reductase C-terminal AMES_7327 PF00067 Cytochrome P450 AMES_7330 PF00248 Aldo/keto reductase family AMES_7331 PF00296 Luciferase-like monooxygenase AMES_7334 PF00942 Cellulose binding domain AMES_7334 PF00553 Cellulose binding domain AMES_7334 PF00759 Glycosyl hydrolase family 9 AMES_7334 PF00041 Fibronectin type III domain AMES_7335 PF07733 Bacterial DNA polymerase III alpha NTPase domain AMES_7335 PF14579 Helix-hairpin-helix motif AMES_7335 PF02811 PHP domain AMES_7335 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AMES_7335 PF01336 OB-fold nucleic acid binding domain AMES_7336 PF04542 Sigma-70 region 2 AMES_7336 PF08281 Sigma-70, region 4 AMES_7337 PF03795 YCII-related domain AMES_7339 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AMES_7339 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AMES_7339 PF01276 Orn/Lys/Arg decarboxylase, major domain AMES_7342 PF04072 Leucine carboxyl methyltransferase AMES_7343 PF00561 alpha/beta hydrolase fold AMES_7344 PF00392 Bacterial regulatory proteins, gntR family AMES_7345 PF00005 ABC transporter AMES_7349 PF10503 Esterase PHB depolymerase AMES_7350 PF00657 GDSL-like Lipase/Acylhydrolase AMES_7350 PF00404 Dockerin type I domain AMES_7352 PF00210 Ferritin-like domain AMES_7354 PF00990 Diguanylate cyclase, GGDEF domain AMES_7354 PF00563 EAL domain AMES_7354 PF03707 Bacterial signalling protein N terminal repeat AMES_7357 PF03259 Roadblock/LC7 domain AMES_7360 PF16363 GDP-mannose 4,6 dehydratase AMES_7362 PF02566 OsmC-like protein AMES_7364 PF00561 alpha/beta hydrolase fold AMES_7365 PF00196 Bacterial regulatory proteins, luxR family AMES_7366 PF07519 Tannase and feruloyl esterase AMES_7367 PF00248 Aldo/keto reductase family AMES_7368 PF13382 Adenine deaminase C-terminal domain AMES_7368 PF01979 Amidohydrolase family AMES_7372 PF01301 Glycosyl hydrolases family 35 AMES_7373 PF06964 Alpha-L-arabinofuranosidase C-terminal domain AMES_7375 PF00528 Binding-protein-dependent transport system inner membrane component AMES_7376 PF00528 Binding-protein-dependent transport system inner membrane component AMES_7377 PF00356 Bacterial regulatory proteins, lacI family AMES_7381 PF01738 Dienelactone hydrolase family AMES_7382 PF08240 Alcohol dehydrogenase GroES-like domain AMES_7382 PF00107 Zinc-binding dehydrogenase AMES_7383 PF02909 Tetracyclin repressor-like, C-terminal domain AMES_7383 PF00440 Bacterial regulatory proteins, tetR family AMES_7385 PF02469 Fasciclin domain AMES_7387 PF10099 Anti-sigma-K factor rskA AMES_7388 PF04542 Sigma-70 region 2 AMES_7388 PF04545 Sigma-70, region 4 AMES_7389 PF04686 Streptomyces sporulation and cell division protein, SsgA AMES_7390 PF00920 Dehydratase family AMES_7391 PF13193 AMP-binding enzyme C-terminal domain AMES_7391 PF00501 AMP-binding enzyme AMES_7392 PF05173 Dihydrodipicolinate reductase, C-terminus AMES_7392 PF01113 Dihydrodipicolinate reductase, N-terminus AMES_7394 PF05199 GMC oxidoreductase AMES_7394 PF00732 GMC oxidoreductase AMES_7397 PF04542 Sigma-70 region 2 AMES_7397 PF08281 Sigma-70, region 4 AMES_7399 PF04542 Sigma-70 region 2 AMES_7399 PF08281 Sigma-70, region 4 AMES_7401 PF01979 Amidohydrolase family AMES_7402 PF00563 EAL domain AMES_7402 PF03707 Bacterial signalling protein N terminal repeat AMES_7402 PF00990 Diguanylate cyclase, GGDEF domain AMES_7403 PF04199 Putative cyclase AMES_7407 PF00553 Cellulose binding domain AMES_7407 PF00704 Glycosyl hydrolases family 18 AMES_7407 PF00041 Fibronectin type III domain AMES_7410 PF04075 F420H(2)-dependent quinone reductase AMES_7411 PF13302 Acetyltransferase (GNAT) domain AMES_7412 PF01209 ubiE/COQ5 methyltransferase family AMES_7413 PF17853 GGDEF-like domain AMES_7413 PF13556 PucR C-terminal helix-turn-helix domain AMES_7413 PF07905 Purine catabolism regulatory protein-like family AMES_7415 PF13443 Cro/C1-type HTH DNA-binding domain AMES_7417 PF08241 Methyltransferase domain AMES_7418 PF11271 Porin PorA AMES_7419 PF00534 Glycosyl transferases group 1 AMES_7419 PF08323 Starch synthase catalytic domain AMES_7424 PF11847 Alpha-(1->3)-arabinofuranosyltransferase AMES_7429 PF00392 Bacterial regulatory proteins, gntR family AMES_7430 PF02627 Carboxymuconolactone decarboxylase family AMES_7431 PF07690 Major Facilitator Superfamily AMES_7432 PF07690 Major Facilitator Superfamily AMES_7435 PF17820 PDZ domain AMES_7435 PF13180 PDZ domain AMES_7436 PF01571 Aminomethyltransferase folate-binding domain AMES_7436 PF01266 FAD dependent oxidoreductase AMES_7436 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMES_7436 PF16350 FAD dependent oxidoreductase central domain AMES_7437 PF00551 Formyl transferase AMES_7439 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMES_7439 PF17806 Sarcosine oxidase A3 domain AMES_7439 PF01571 Aminomethyltransferase folate-binding domain AMES_7439 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMES_7440 PF04267 Sarcosine oxidase, delta subunit family AMES_7441 PF01266 FAD dependent oxidoreductase AMES_7442 PF00464 Serine hydroxymethyltransferase AMES_7443 PF07729 FCD domain AMES_7443 PF00392 Bacterial regulatory proteins, gntR family AMES_7444 PF00355 Rieske [2Fe-2S] domain AMES_7444 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AMES_7445 PF00440 Bacterial regulatory proteins, tetR family AMES_7448 PF00732 GMC oxidoreductase AMES_7448 PF05199 GMC oxidoreductase AMES_7450 PF00355 Rieske [2Fe-2S] domain AMES_7451 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMES_7451 PF14759 Reductase C-terminal AMES_7453 PF00561 alpha/beta hydrolase fold AMES_7457 PF00364 Biotin-requiring enzyme AMES_7457 PF02817 e3 binding domain AMES_7457 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMES_7458 PF02779 Transketolase, pyrimidine binding domain AMES_7458 PF02780 Transketolase, C-terminal domain AMES_7459 PF00676 Dehydrogenase E1 component AMES_7462 PF00933 Glycosyl hydrolase family 3 N terminal domain AMES_7462 PF14310 Fibronectin type III-like domain AMES_7462 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMES_7465 PF00486 Transcriptional regulatory protein, C terminal AMES_7465 PF00072 Response regulator receiver domain AMES_7466 PF01494 FAD binding domain AMES_7467 PF00512 His Kinase A (phospho-acceptor) domain AMES_7467 PF00989 PAS fold AMES_7467 PF16736 Single Cache-like AMES_7467 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_7469 PF00041 Fibronectin type III domain AMES_7469 PF02018 Carbohydrate binding domain AMES_7469 PF00704 Glycosyl hydrolases family 18 AMES_7470 PF03793 PASTA domain AMES_7470 PF00069 Protein kinase domain AMES_7475 PF01022 Bacterial regulatory protein, arsR family AMES_7477 PF04261 Dyp-type peroxidase family AMES_7478 PF04185 Phosphoesterase family AMES_7478 PF05506 Domain of unknown function (DUF756) AMES_7481 PF00072 Response regulator receiver domain AMES_7482 PF00360 Phytochrome region AMES_7482 PF00512 His Kinase A (phospho-acceptor) domain AMES_7482 PF01590 GAF domain AMES_7482 PF08446 PAS fold AMES_7482 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_7483 PF00072 Response regulator receiver domain AMES_7483 PF00486 Transcriptional regulatory protein, C terminal AMES_7492 PF12697 Alpha/beta hydrolase family AMES_7493 PF13556 PucR C-terminal helix-turn-helix domain AMES_7493 PF17853 GGDEF-like domain AMES_7495 PF02801 Beta-ketoacyl synthase, C-terminal domain AMES_7495 PF08659 KR domain AMES_7495 PF00109 Beta-ketoacyl synthase, N-terminal domain AMES_7495 PF00550 Phosphopantetheine attachment site AMES_7495 PF14765 Polyketide synthase dehydratase AMES_7495 PF16197 Ketoacyl-synthetase C-terminal extension AMES_7495 PF00698 Acyl transferase domain AMES_7499 PF02470 MlaD protein AMES_7504 PF02405 Permease MlaE AMES_7508 PF13732 Domain of unknown function (DUF4162) AMES_7508 PF00005 ABC transporter AMES_7510 PF01061 ABC-2 type transporter AMES_7519 PF00440 Bacterial regulatory proteins, tetR family AMES_7520 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMES_7520 PF01872 RibD C-terminal domain AMES_7523 PF01636 Phosphotransferase enzyme family AMES_7524 PF00440 Bacterial regulatory proteins, tetR family AMES_7528 PF01568 Molydopterin dinucleotide binding domain AMES_7528 PF00384 Molybdopterin oxidoreductase AMES_7528 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMES_7529 PF00501 AMP-binding enzyme AMES_7529 PF13193 AMP-binding enzyme C-terminal domain AMES_7530 PF00296 Luciferase-like monooxygenase AMES_7532 PF01638 HxlR-like helix-turn-helix AMES_7535 PF01965 DJ-1/PfpI family AMES_7535 PF12833 Helix-turn-helix domain AMES_7536 PF00583 Acetyltransferase (GNAT) family AMES_7539 PF07690 Major Facilitator Superfamily AMES_7540 PF00561 alpha/beta hydrolase fold AMES_7547 PF03466 LysR substrate binding domain AMES_7547 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMES_7551 PF02096 60Kd inner membrane protein AMES_7554 PF00149 Calcineurin-like phosphoesterase AMES_7556 PF01661 Macro domain AMES_7558 PF13419 Haloacid dehalogenase-like hydrolase AMES_7562 PF03259 Roadblock/LC7 domain AMES_7566 PF00501 AMP-binding enzyme AMES_7569 PF08448 PAS fold AMES_7569 PF00990 Diguanylate cyclase, GGDEF domain AMES_7571 PF03816 Cell envelope-related transcriptional attenuator domain AMES_7571 PF13399 LytR cell envelope-related transcriptional attenuator AMES_7573 PF00743 Flavin-binding monooxygenase-like AMES_7578 PF01965 DJ-1/PfpI family AMES_7578 PF12833 Helix-turn-helix domain AMES_7579 PF00248 Aldo/keto reductase family AMES_7580 PF12833 Helix-turn-helix domain AMES_7580 PF06719 AraC-type transcriptional regulator N-terminus AMES_7584 PF00578 AhpC/TSA family AMES_7585 PF01725 Ham1 family AMES_7587 PF03725 3' exoribonuclease family, domain 2 AMES_7587 PF01138 3' exoribonuclease family, domain 1 AMES_7588 PF12706 Beta-lactamase superfamily domain AMES_7589 PF01177 Asp/Glu/Hydantoin racemase AMES_7590 PF01694 Rhomboid family AMES_7591 PF01177 Asp/Glu/Hydantoin racemase AMES_7594 PF00291 Pyridoxal-phosphate dependent enzyme AMES_7595 PF02597 ThiS family AMES_7596 PF14464 Prokaryotic homologs of the JAB domain AMES_7597 PF03576 Peptidase family S58 AMES_7599 PF09438 Domain of unknown function (DUF2017) AMES_7600 PF02617 ATP-dependent Clp protease adaptor protein ClpS AMES_7601 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AMES_7601 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AMES_7602 PF00857 Isochorismatase family AMES_7603 PF01081 KDPG and KHG aldolase AMES_7605 PF02632 BioY family AMES_7606 PF13307 Helicase C-terminal domain AMES_7612 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMES_7613 PF00561 alpha/beta hydrolase fold AMES_7615 PF13302 Acetyltransferase (GNAT) domain AMES_7617 PF01527 Transposase AMES_7618 PF13333 Integrase core domain AMES_7618 PF00665 Integrase core domain AMES_7618 PF13276 HTH-like domain AMES_7621 PF01053 Cys/Met metabolism PLP-dependent enzyme AMES_7622 PF01037 Lrp/AsnC ligand binding domain AMES_7624 PF01037 Lrp/AsnC ligand binding domain AMES_7625 PF00296 Luciferase-like monooxygenase AMES_7627 PF18389 TrmO C-terminal domain AMES_7627 PF01980 tRNA-methyltransferase O AMES_7628 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMES_7628 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMES_7629 PF05524 PEP-utilising enzyme, N-terminal AMES_7629 PF00391 PEP-utilising enzyme, mobile domain AMES_7629 PF03610 PTS system fructose IIA component AMES_7629 PF00381 PTS HPr component phosphorylation site AMES_7630 PF02734 DAK2 domain AMES_7631 PF02733 Dak1 domain AMES_7634 PF00474 Sodium:solute symporter family AMES_7637 PF01939 Endonuclease NucS AMES_7639 PF00293 NUDIX domain AMES_7641 PF00378 Enoyl-CoA hydratase/isomerase AMES_7642 PF12833 Helix-turn-helix domain AMES_7642 PF01965 DJ-1/PfpI family AMES_7644 PF00857 Isochorismatase family AMES_7647 PF01810 LysE type translocator AMES_7649 PF01810 LysE type translocator AMES_7650 PF01370 NAD dependent epimerase/dehydratase family AMES_7651 PF12680 SnoaL-like domain AMES_7652 PF00440 Bacterial regulatory proteins, tetR family AMES_7652 PF16859 Tetracyclin repressor-like, C-terminal domain AMES_7653 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMES_7654 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMES_7655 PF01923 Cobalamin adenosyltransferase AMES_7656 PF10739 Protein of unknown function (DUF2550) AMES_7657 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AMES_7658 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMES_7658 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMES_7659 PF00231 ATP synthase AMES_7660 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMES_7660 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMES_7660 PF00306 ATP synthase alpha/beta chain, C terminal domain AMES_7661 PF00213 ATP synthase delta (OSCP) subunit AMES_7662 PF00430 ATP synthase B/B' CF(0) AMES_7663 PF00137 ATP synthase subunit C AMES_7664 PF00119 ATP synthase A chain AMES_7666 PF00953 Glycosyl transferase family 4 AMES_7667 PF01300 Telomere recombination AMES_7669 PF05175 Methyltransferase small domain AMES_7669 PF17827 PrmC N-terminal domain AMES_7670 PF00535 Glycosyl transferase family 2 AMES_7673 PF03462 PCRF domain AMES_7673 PF00472 RF-1 domain AMES_7674 PF01197 Ribosomal protein L31 AMES_7675 PF07498 Rho termination factor, N-terminal domain AMES_7675 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMES_7675 PF07497 Rho termination factor, RNA-binding domain AMES_7676 PF00288 GHMP kinases N terminal domain AMES_7677 PF00291 Pyridoxal-phosphate dependent enzyme AMES_7678 PF01842 ACT domain AMES_7678 PF00742 Homoserine dehydrogenase AMES_7678 PF03447 Homoserine dehydrogenase, NAD binding domain AMES_7679 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMES_7679 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMES_7680 PF00750 tRNA synthetases class I (R) AMES_7680 PF03485 Arginyl tRNA synthetase N terminal domain AMES_7680 PF05746 DALR anticodon binding domain AMES_7684 PF01545 Cation efflux family AMES_7686 PF06441 Epoxide hydrolase N terminus AMES_7687 PF00106 short chain dehydrogenase AMES_7689 PF08240 Alcohol dehydrogenase GroES-like domain AMES_7689 PF00107 Zinc-binding dehydrogenase AMES_7691 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AMES_7700 PF01975 Survival protein SurE AMES_7702 PF00486 Transcriptional regulatory protein, C terminal AMES_7702 PF00931 NB-ARC domain AMES_7702 PF03704 Bacterial transcriptional activator domain AMES_7703 PF00258 Flavodoxin AMES_7703 PF00175 Oxidoreductase NAD-binding domain AMES_7703 PF00667 FAD binding domain AMES_7703 PF00067 Cytochrome P450 AMES_7705 PF00295 Glycosyl hydrolases family 28 AMES_7706 PF00041 Fibronectin type III domain AMES_7706 PF00704 Glycosyl hydrolases family 18 AMES_7707 PF16499 Alpha galactosidase A AMES_7707 PF17801 Alpha galactosidase C-terminal beta sandwich domain AMES_7708 PF00652 Ricin-type beta-trefoil lectin domain AMES_7708 PF03664 Glycosyl hydrolase family 62 AMES_7709 PF00150 Cellulase (glycosyl hydrolase family 5) AMES_7709 PF00942 Cellulose binding domain AMES_7709 PF12891 Glycoside hydrolase family 44 AMES_7710 PF00480 ROK family AMES_7712 PF00652 Ricin-type beta-trefoil lectin domain AMES_7712 PF03664 Glycosyl hydrolase family 62 AMES_7713 PF00331 Glycosyl hydrolase family 10 AMES_7713 PF00652 Ricin-type beta-trefoil lectin domain AMES_7716 PF00150 Cellulase (glycosyl hydrolase family 5) AMES_7716 PF00942 Cellulose binding domain AMES_7716 PF12891 Glycoside hydrolase family 44 AMES_7720 PF13229 Right handed beta helix region AMES_7723 PF01494 FAD binding domain AMES_7725 PF01609 Transposase DDE domain AMES_7725 PF13808 DDE_Tnp_1-associated AMES_7735 PF00202 Aminotransferase class-III AMES_7736 PF02515 CoA-transferase family III AMES_7741 PF02538 Hydantoinase B/oxoprolinase AMES_7742 PF05378 Hydantoinase/oxoprolinase N-terminal region AMES_7742 PF01968 Hydantoinase/oxoprolinase AMES_7743 PF00205 Thiamine pyrophosphate enzyme, central domain AMES_7743 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMES_7743 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMES_7745 PF06974 Protein of unknown function (DUF1298) AMES_7745 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain AMES_7746 PF03070 TENA/THI-4/PQQC family AMES_7747 PF05402 Coenzyme PQQ synthesis protein D (PqqD) AMES_7748 PF13186 Iron-sulfur cluster-binding domain AMES_7748 PF04055 Radical SAM superfamily AMES_7749 PF12706 Beta-lactamase superfamily domain AMES_7752 PF01425 Amidase AMES_7753 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMES_7758 PF00180 Isocitrate/isopropylmalate dehydrogenase AMES_7759 PF00171 Aldehyde dehydrogenase family AMES_7762 PF00248 Aldo/keto reductase family AMES_7765 PF01565 FAD binding domain AMES_7765 PF02913 FAD linked oxidases, C-terminal domain AMES_7766 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMES_7766 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMES_7768 PF07690 Major Facilitator Superfamily AMES_7771 PF07730 Histidine kinase AMES_7772 PF00072 Response regulator receiver domain AMES_7772 PF00196 Bacterial regulatory proteins, luxR family AMES_7773 PF17678 Glycosyl hydrolase family 92 N-terminal domain AMES_7773 PF07971 Glycosyl hydrolase family 92 AMES_7774 PF03176 MMPL family AMES_7775 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMES_7775 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMES_7775 PF00378 Enoyl-CoA hydratase/isomerase AMES_7776 PF02803 Thiolase, C-terminal domain AMES_7776 PF00108 Thiolase, N-terminal domain AMES_7777 PF00440 Bacterial regulatory proteins, tetR family AMES_7783 PF06772 Bacterial low temperature requirement A protein (LtrA) AMES_7784 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_7784 PF02770 Acyl-CoA dehydrogenase, middle domain AMES_7784 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_7785 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_7785 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_7785 PF02770 Acyl-CoA dehydrogenase, middle domain AMES_7794 PF00293 NUDIX domain AMES_7794 PF13344 Haloacid dehalogenase-like hydrolase AMES_7796 PF00106 short chain dehydrogenase AMES_7798 PF00557 Metallopeptidase family M24 AMES_7802 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_7802 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_7802 PF02770 Acyl-CoA dehydrogenase, middle domain AMES_7803 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMES_7803 PF00364 Biotin-requiring enzyme AMES_7803 PF00289 Biotin carboxylase, N-terminal domain AMES_7803 PF02785 Biotin carboxylase C-terminal domain AMES_7804 PF01039 Carboxyl transferase domain AMES_7805 PF13472 GDSL-like Lipase/Acylhydrolase family AMES_7807 PF00440 Bacterial regulatory proteins, tetR family AMES_7810 PF00561 alpha/beta hydrolase fold AMES_7811 PF01053 Cys/Met metabolism PLP-dependent enzyme AMES_7812 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMES_7813 PF01494 FAD binding domain AMES_7817 PF13847 Methyltransferase domain AMES_7818 PF06018 CodY GAF-like domain AMES_7818 PF17853 GGDEF-like domain AMES_7818 PF13556 PucR C-terminal helix-turn-helix domain AMES_7820 PF08240 Alcohol dehydrogenase GroES-like domain AMES_7820 PF00107 Zinc-binding dehydrogenase AMES_7821 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AMES_7821 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AMES_7823 PF00672 HAMP domain AMES_7823 PF00512 His Kinase A (phospho-acceptor) domain AMES_7823 PF16527 Two-component sensor protein CpxA, periplasmic domain AMES_7823 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_7825 PF00486 Transcriptional regulatory protein, C terminal AMES_7825 PF00072 Response regulator receiver domain AMES_7826 PF00005 ABC transporter AMES_7828 PF00005 ABC transporter AMES_7828 PF00664 ABC transporter transmembrane region AMES_7831 PF16870 2-oxoglutarate dehydrogenase C-terminal AMES_7831 PF00676 Dehydrogenase E1 component AMES_7831 PF02779 Transketolase, pyrimidine binding domain AMES_7831 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMES_7831 PF16078 2-oxoglutarate dehydrogenase N-terminus AMES_7832 PF00561 alpha/beta hydrolase fold AMES_7833 PF02709 N-terminal domain of galactosyltransferase AMES_7833 PF00535 Glycosyl transferase family 2 AMES_7834 PF07690 Major Facilitator Superfamily AMES_7836 PF00296 Luciferase-like monooxygenase AMES_7839 PF00528 Binding-protein-dependent transport system inner membrane component AMES_7840 PF00528 Binding-protein-dependent transport system inner membrane component AMES_7841 PF00571 CBS domain AMES_7841 PF00005 ABC transporter AMES_7843 PF00390 Malic enzyme, N-terminal domain AMES_7843 PF03949 Malic enzyme, NAD binding domain AMES_7844 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AMES_7846 PF01047 MarR family AMES_7849 PF00300 Histidine phosphatase superfamily (branch 1) AMES_7852 PF00781 Diacylglycerol kinase catalytic domain AMES_7853 PF02467 Transcription factor WhiB AMES_7854 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_7854 PF07568 Histidine kinase AMES_7854 PF12282 Signal transduction histidine kinase AMES_7855 PF13490 Putative zinc-finger AMES_7856 PF08281 Sigma-70, region 4 AMES_7856 PF04542 Sigma-70 region 2 AMES_7857 PF04073 Aminoacyl-tRNA editing domain AMES_7859 PF02586 SOS response associated peptidase (SRAP) AMES_7860 PF03193 RsgA GTPase AMES_7864 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain AMES_7865 PF00588 SpoU rRNA Methylase family AMES_7865 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMES_7866 PF13419 Haloacid dehalogenase-like hydrolase AMES_7868 PF00067 Cytochrome P450 AMES_7869 PF07517 SecA DEAD-like domain AMES_7869 PF01043 SecA preprotein cross-linking domain AMES_7869 PF07516 SecA Wing and Scaffold domain AMES_7870 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AMES_7870 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus AMES_7872 PF10646 Sporulation and spore germination AMES_7872 PF10647 Lipoprotein LpqB beta-propeller domain AMES_7873 PF00512 His Kinase A (phospho-acceptor) domain AMES_7873 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_7873 PF00672 HAMP domain AMES_7874 PF00072 Response regulator receiver domain AMES_7874 PF00486 Transcriptional regulatory protein, C terminal AMES_7875 PF00355 Rieske [2Fe-2S] domain AMES_7877 PF01614 Bacterial transcriptional regulator AMES_7877 PF09339 IclR helix-turn-helix domain AMES_7879 PF16350 FAD dependent oxidoreductase central domain AMES_7879 PF01571 Aminomethyltransferase folate-binding domain AMES_7879 PF01266 FAD dependent oxidoreductase AMES_7879 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMES_7880 PF02223 Thymidylate kinase AMES_7887 PF05221 S-adenosyl-L-homocysteine hydrolase AMES_7887 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AMES_7890 PF13520 Amino acid permease AMES_7892 PF00931 NB-ARC domain AMES_7892 PF03704 Bacterial transcriptional activator domain AMES_7892 PF00486 Transcriptional regulatory protein, C terminal AMES_7893 PF01238 Phosphomannose isomerase type I AMES_7895 PF03966 Trm112p-like protein AMES_7896 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMES_7896 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMES_7896 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMES_7896 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMES_7900 PF02467 Transcription factor WhiB AMES_7904 PF02585 GlcNAc-PI de-N-acetylase AMES_7905 PF00005 ABC transporter AMES_7905 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMES_7906 PF00528 Binding-protein-dependent transport system inner membrane component AMES_7907 PF00528 Binding-protein-dependent transport system inner membrane component AMES_7907 PF12911 N-terminal TM domain of oligopeptide transport permease C AMES_7908 PF00528 Binding-protein-dependent transport system inner membrane component AMES_7910 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMES_7913 PF00579 tRNA synthetases class I (W and Y) AMES_7915 PF00672 HAMP domain AMES_7915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_7915 PF00512 His Kinase A (phospho-acceptor) domain AMES_7916 PF00486 Transcriptional regulatory protein, C terminal AMES_7916 PF00072 Response regulator receiver domain AMES_7918 PF00005 ABC transporter AMES_7920 PF08402 TOBE domain AMES_7920 PF00005 ABC transporter AMES_7921 PF00528 Binding-protein-dependent transport system inner membrane component AMES_7923 PF01329 Pterin 4 alpha carbinolamine dehydratase AMES_7927 PF06071 Protein of unknown function (DUF933) AMES_7927 PF01926 50S ribosome-binding GTPase AMES_7929 PF12833 Helix-turn-helix domain AMES_7929 PF00730 HhH-GPD superfamily base excision DNA repair protein AMES_7929 PF06029 AlkA N-terminal domain AMES_7929 PF02805 Metal binding domain of Ada AMES_7930 PF13476 AAA domain AMES_7931 PF00149 Calcineurin-like phosphoesterase AMES_7931 PF12320 Type 5 capsule protein repressor C-terminal domain AMES_7933 PF02401 LytB protein AMES_7935 PF02601 Exonuclease VII, large subunit AMES_7935 PF13742 OB-fold nucleic acid binding domain AMES_7937 PF02609 Exonuclease VII small subunit AMES_7938 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AMES_7940 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMES_7941 PF10415 Fumarase C C-terminus AMES_7941 PF00206 Lyase AMES_7943 PF04675 DNA ligase N terminus AMES_7943 PF04679 ATP dependent DNA ligase C terminal region AMES_7943 PF01068 ATP dependent DNA ligase domain AMES_7946 PF00753 Metallo-beta-lactamase superfamily AMES_7950 PF00478 IMP dehydrogenase / GMP reductase domain AMES_7950 PF00571 CBS domain AMES_7952 PF02562 PhoH-like protein AMES_7952 PF13638 PIN domain AMES_7953 PF01255 Putative undecaprenyl diphosphate synthase AMES_7954 PF03006 Haemolysin-III related AMES_7957 PF11181 Heat induced stress protein YflT AMES_7957 PF09557 Domain of unknown function (DUF2382) AMES_7959 PF12708 Pectate lyase superfamily protein AMES_7959 PF08548 Peptidase M10 serralysin C terminal AMES_7959 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) AMES_7963 PF03190 Protein of unknown function, DUF255 AMES_7965 PF17827 PrmC N-terminal domain AMES_7965 PF05175 Methyltransferase small domain AMES_7966 PF00149 Calcineurin-like phosphoesterase AMES_7968 PF02585 GlcNAc-PI de-N-acetylase AMES_7970 PF03449 Transcription elongation factor, N-terminal AMES_7970 PF01272 Transcription elongation factor, GreA/GreB, C-term AMES_7972 PF13404 AsnC-type helix-turn-helix domain AMES_7972 PF01037 Lrp/AsnC ligand binding domain AMES_7973 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMES_7979 PF13291 ACT domain AMES_7979 PF00291 Pyridoxal-phosphate dependent enzyme AMES_7982 PF01053 Cys/Met metabolism PLP-dependent enzyme AMES_7985 PF00291 Pyridoxal-phosphate dependent enzyme AMES_7985 PF00571 CBS domain AMES_7986 PF02803 Thiolase, C-terminal domain AMES_7986 PF00108 Thiolase, N-terminal domain AMES_7991 PF00106 short chain dehydrogenase AMES_7996 PF00486 Transcriptional regulatory protein, C terminal AMES_7996 PF00498 FHA domain AMES_7996 PF03704 Bacterial transcriptional activator domain AMES_7997 PF00232 Glycosyl hydrolase family 1 AMES_7998 PF00931 NB-ARC domain AMES_7998 PF03704 Bacterial transcriptional activator domain AMES_7998 PF00486 Transcriptional regulatory protein, C terminal AMES_7999 PF00528 Binding-protein-dependent transport system inner membrane component AMES_8000 PF00528 Binding-protein-dependent transport system inner membrane component AMES_8002 PF00072 Response regulator receiver domain AMES_8002 PF00196 Bacterial regulatory proteins, luxR family AMES_8003 PF00933 Glycosyl hydrolase family 3 N terminal domain AMES_8004 PF00248 Aldo/keto reductase family AMES_8005 PF07690 Major Facilitator Superfamily AMES_8010 PF00975 Thioesterase domain AMES_8011 PF02983 Alpha-lytic protease prodomain AMES_8012 PF12833 Helix-turn-helix domain AMES_8015 PF00041 Fibronectin type III domain AMES_8015 PF01341 Glycosyl hydrolases family 6 AMES_8015 PF00553 Cellulose binding domain AMES_8016 PF00679 Elongation factor G C-terminus AMES_8016 PF03764 Elongation factor G, domain IV AMES_8016 PF00009 Elongation factor Tu GTP binding domain AMES_8018 PF00672 HAMP domain AMES_8018 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_8018 PF00512 His Kinase A (phospho-acceptor) domain AMES_8019 PF00113 Enolase, C-terminal TIM barrel domain AMES_8019 PF03952 Enolase, N-terminal domain AMES_8020 PF10502 Signal peptidase, peptidase S26 AMES_8021 PF00005 ABC transporter AMES_8021 PF00664 ABC transporter transmembrane region AMES_8026 PF00196 Bacterial regulatory proteins, luxR family AMES_8027 PF01494 FAD binding domain AMES_8030 PF00196 Bacterial regulatory proteins, luxR family AMES_8040 PF04542 Sigma-70 region 2 AMES_8040 PF08281 Sigma-70, region 4 AMES_8041 PF00069 Protein kinase domain AMES_8041 PF03793 PASTA domain AMES_8047 PF00440 Bacterial regulatory proteins, tetR family AMES_8048 PF04545 Sigma-70, region 4 AMES_8048 PF04539 Sigma-70 region 3 AMES_8048 PF04542 Sigma-70 region 2 AMES_8060 PF03167 Uracil DNA glycosylase superfamily AMES_8061 PF04493 Endonuclease V AMES_8063 PF00082 Subtilase family AMES_8064 PF00005 ABC transporter AMES_8064 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMES_8065 PF00005 ABC transporter AMES_8065 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMES_8068 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMES_8069 PF02541 Ppx/GppA phosphatase family AMES_8073 PF00113 Enolase, C-terminal TIM barrel domain AMES_8073 PF03952 Enolase, N-terminal domain AMES_8077 PF03239 Iron permease FTR1 family AMES_8078 PF13473 Cupredoxin-like domain AMES_8078 PF09375 Imelysin AMES_8079 PF04261 Dyp-type peroxidase family AMES_8079 PF10518 TAT (twin-arginine translocation) pathway signal sequence AMES_8082 PF01243 Pyridoxamine 5'-phosphate oxidase AMES_8085 PF00005 ABC transporter AMES_8087 PF08281 Sigma-70, region 4 AMES_8087 PF04542 Sigma-70 region 2 AMES_8088 PF03819 MazG nucleotide pyrophosphohydrolase domain AMES_8092 PF00270 DEAD/DEAH box helicase AMES_8092 PF00271 Helicase conserved C-terminal domain AMES_8092 PF03461 TRCF domain AMES_8092 PF17757 UvrB interaction domain AMES_8092 PF02559 CarD-like/TRCF domain AMES_8094 PF09335 SNARE associated Golgi protein AMES_8096 PF00398 Ribosomal RNA adenine dimethylase AMES_8097 PF07730 Histidine kinase AMES_8098 PF00072 Response regulator receiver domain AMES_8098 PF00196 Bacterial regulatory proteins, luxR family AMES_8099 PF07995 Glucose / Sorbosone dehydrogenase AMES_8103 PF00293 NUDIX domain AMES_8104 PF18665 Tetracyclin repressor-like, C-terminal domain AMES_8104 PF00440 Bacterial regulatory proteins, tetR family AMES_8106 PF00563 EAL domain AMES_8106 PF13185 GAF domain AMES_8106 PF00990 Diguanylate cyclase, GGDEF domain AMES_8107 PF12804 MobA-like NTP transferase domain AMES_8107 PF00132 Bacterial transferase hexapeptide (six repeats) AMES_8108 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AMES_8108 PF14572 Phosphoribosyl synthetase-associated domain AMES_8112 PF01386 Ribosomal L25p family AMES_8112 PF14693 Ribosomal protein TL5, C-terminal domain AMES_8113 PF01195 Peptidyl-tRNA hydrolase AMES_8114 PF05103 DivIVA protein AMES_8116 PF00501 AMP-binding enzyme AMES_8116 PF14535 AMP-binding enzyme C-terminal domain AMES_8117 PF00005 ABC transporter AMES_8117 PF16326 ABC transporter C-terminal domain AMES_8117 PF12848 ABC transporter AMES_8119 PF08544 GHMP kinases C terminal AMES_8119 PF00288 GHMP kinases N terminal domain AMES_8120 PF09383 NIL domain AMES_8120 PF00005 ABC transporter AMES_8121 PF00398 Ribosomal RNA adenine dimethylase AMES_8122 PF03990 G5-linked-Ubiquitin-like domain AMES_8122 PF07501 G5 domain AMES_8122 PF06737 Transglycosylase-like domain AMES_8123 PF01026 TatD related DNase AMES_8124 PF08264 Anticodon-binding domain of tRNA AMES_8124 PF09334 tRNA synthetases class I (M) AMES_8126 PF00005 ABC transporter AMES_8126 PF13732 Domain of unknown function (DUF4162) AMES_8129 PF00107 Zinc-binding dehydrogenase AMES_8129 PF08240 Alcohol dehydrogenase GroES-like domain AMES_8130 PF04715 Anthranilate synthase component I, N terminal region AMES_8130 PF00425 chorismate binding enzyme AMES_8131 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMES_8133 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase AMES_8133 PF16192 C-terminal four TMM region of protein-O-mannosyltransferase AMES_8135 PF00069 Protein kinase domain AMES_8135 PF03793 PASTA domain AMES_8136 PF00398 Ribosomal RNA adenine dimethylase AMES_8137 PF00501 AMP-binding enzyme AMES_8137 PF13193 AMP-binding enzyme C-terminal domain AMES_8137 PF16177 Acetyl-coenzyme A synthetase N-terminus AMES_8138 PF02838 Glycosyl hydrolase family 20, domain 2 AMES_8138 PF00728 Glycosyl hydrolase family 20, catalytic domain AMES_8140 PF03473 MOSC domain AMES_8140 PF03475 3-alpha domain AMES_8142 PF03358 NADPH-dependent FMN reductase AMES_8143 PF12680 SnoaL-like domain AMES_8143 PF08281 Sigma-70, region 4 AMES_8143 PF04542 Sigma-70 region 2 AMES_8150 PF03176 MMPL family AMES_8151 PF08447 PAS fold AMES_8151 PF00563 EAL domain AMES_8151 PF08448 PAS fold AMES_8151 PF00990 Diguanylate cyclase, GGDEF domain AMES_8153 PF00067 Cytochrome P450 AMES_8154 PF13614 AAA domain AMES_8157 PF05368 NmrA-like family AMES_8159 PF00072 Response regulator receiver domain AMES_8159 PF00486 Transcriptional regulatory protein, C terminal AMES_8160 PF01427 D-ala-D-ala dipeptidase AMES_8161 PF00512 His Kinase A (phospho-acceptor) domain AMES_8161 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_8161 PF00672 HAMP domain AMES_8162 PF07478 D-ala D-ala ligase C-terminus AMES_8162 PF01820 D-ala D-ala ligase N-terminus AMES_8163 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMES_8163 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMES_8164 PF00291 Pyridoxal-phosphate dependent enzyme AMES_8165 PF01638 HxlR-like helix-turn-helix AMES_8166 PF00155 Aminotransferase class I and II AMES_8167 PF00668 Condensation domain AMES_8167 PF08242 Methyltransferase domain AMES_8167 PF00501 AMP-binding enzyme AMES_8167 PF00550 Phosphopantetheine attachment site AMES_8169 PF00975 Thioesterase domain AMES_8170 PF01810 LysE type translocator AMES_8172 PF03793 PASTA domain AMES_8172 PF00069 Protein kinase domain AMES_8181 PF13302 Acetyltransferase (GNAT) domain AMES_8182 PF03453 MoeA N-terminal region (domain I and II) AMES_8182 PF03454 MoeA C-terminal region (domain IV) AMES_8182 PF00994 Probable molybdopterin binding domain AMES_8183 PF00483 Nucleotidyl transferase AMES_8184 PF01812 5-formyltetrahydrofolate cyclo-ligase family AMES_8187 PF01741 Large-conductance mechanosensitive channel, MscL AMES_8189 PF00994 Probable molybdopterin binding domain AMES_8189 PF01967 MoaC family AMES_8190 PF01370 NAD dependent epimerase/dehydratase family AMES_8193 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_8193 PF00989 PAS fold AMES_8193 PF00512 His Kinase A (phospho-acceptor) domain AMES_8193 PF16736 Single Cache-like AMES_8194 PF00072 Response regulator receiver domain AMES_8194 PF00486 Transcriptional regulatory protein, C terminal AMES_8196 PF00535 Glycosyl transferase family 2 AMES_8198 PF08241 Methyltransferase domain AMES_8201 PF13180 PDZ domain AMES_8202 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AMES_8202 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AMES_8203 PF00455 DeoR C terminal sensor domain AMES_8203 PF08220 DeoR-like helix-turn-helix domain AMES_8204 PF00512 His Kinase A (phospho-acceptor) domain AMES_8204 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_8204 PF00672 HAMP domain AMES_8205 PF00486 Transcriptional regulatory protein, C terminal AMES_8205 PF00072 Response regulator receiver domain AMES_8206 PF03458 UPF0126 domain AMES_8207 PF00072 Response regulator receiver domain AMES_8207 PF00196 Bacterial regulatory proteins, luxR family AMES_8209 PF07690 Major Facilitator Superfamily AMES_8210 PF00248 Aldo/keto reductase family AMES_8211 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMES_8211 PF03466 LysR substrate binding domain AMES_8212 PF00392 Bacterial regulatory proteins, gntR family AMES_8212 PF00155 Aminotransferase class I and II AMES_8215 PF03793 PASTA domain AMES_8215 PF00069 Protein kinase domain AMES_8216 PF00459 Inositol monophosphatase family AMES_8217 PF00925 GTP cyclohydrolase II AMES_8218 PF02633 Creatinine amidohydrolase AMES_8221 PF13439 Glycosyltransferase Family 4 AMES_8221 PF00534 Glycosyl transferases group 1 AMES_8225 PF13298 DNA polymerase Ligase (LigD) AMES_8225 PF04679 ATP dependent DNA ligase C terminal region AMES_8225 PF01068 ATP dependent DNA ligase domain AMES_8226 PF09995 Uncharacterized protein conserved in bacteria (DUF2236) AMES_8227 PF03466 LysR substrate binding domain AMES_8227 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMES_8228 PF01565 FAD binding domain AMES_8228 PF08031 Berberine and berberine like AMES_8229 PF04075 F420H(2)-dependent quinone reductase AMES_8230 PF01757 Acyltransferase family AMES_8237 PF01494 FAD binding domain AMES_8239 PF02770 Acyl-CoA dehydrogenase, middle domain AMES_8239 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_8239 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_8240 PF00232 Glycosyl hydrolase family 1 AMES_8241 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMES_8241 PF00005 ABC transporter AMES_8242 PF00528 Binding-protein-dependent transport system inner membrane component AMES_8242 PF12911 N-terminal TM domain of oligopeptide transport permease C AMES_8243 PF00528 Binding-protein-dependent transport system inner membrane component AMES_8244 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMES_8244 PF00005 ABC transporter AMES_8245 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMES_8247 PF00480 ROK family AMES_8247 PF01047 MarR family AMES_8248 PF00722 Glycosyl hydrolases family 16 AMES_8249 PF00652 Ricin-type beta-trefoil lectin domain AMES_8249 PF16483 Beta-1,3-glucanase AMES_8250 PF00652 Ricin-type beta-trefoil lectin domain AMES_8250 PF16483 Beta-1,3-glucanase AMES_8254 PF07286 Protein of unknown function (DUF1445) AMES_8255 PF03746 LamB/YcsF family AMES_8256 PF02682 Carboxyltransferase domain, subdomain C and D AMES_8257 PF02626 Carboxyltransferase domain, subdomain A and B AMES_8260 PF13532 2OG-Fe(II) oxygenase superfamily AMES_8262 PF08240 Alcohol dehydrogenase GroES-like domain AMES_8262 PF00107 Zinc-binding dehydrogenase AMES_8265 PF01325 Iron dependent repressor, N-terminal DNA binding domain AMES_8265 PF02742 Iron dependent repressor, metal binding and dimerisation domain AMES_8268 PF07969 Amidohydrolase family AMES_8269 PF00378 Enoyl-CoA hydratase/isomerase AMES_8270 PF13193 AMP-binding enzyme C-terminal domain AMES_8270 PF00501 AMP-binding enzyme AMES_8274 PF00425 chorismate binding enzyme AMES_8277 PF00501 AMP-binding enzyme AMES_8277 PF13193 AMP-binding enzyme C-terminal domain AMES_8278 PF13416 Bacterial extracellular solute-binding protein AMES_8279 PF00528 Binding-protein-dependent transport system inner membrane component AMES_8280 PF00528 Binding-protein-dependent transport system inner membrane component AMES_8285 PF08281 Sigma-70, region 4 AMES_8285 PF12680 SnoaL-like domain AMES_8285 PF04542 Sigma-70 region 2 AMES_8286 PF00107 Zinc-binding dehydrogenase AMES_8286 PF08240 Alcohol dehydrogenase GroES-like domain AMES_8287 PF02913 FAD linked oxidases, C-terminal domain AMES_8287 PF01565 FAD binding domain AMES_8289 PF00440 Bacterial regulatory proteins, tetR family AMES_8290 PF01266 FAD dependent oxidoreductase AMES_8290 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AMES_8293 PF00005 ABC transporter AMES_8293 PF13732 Domain of unknown function (DUF4162) AMES_8295 PF00875 DNA photolyase AMES_8295 PF03441 FAD binding domain of DNA photolyase AMES_8297 PF00285 Citrate synthase, C-terminal domain AMES_8298 PF00294 pfkB family carbohydrate kinase AMES_8300 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_8300 PF02770 Acyl-CoA dehydrogenase, middle domain AMES_8300 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_8303 PF13382 Adenine deaminase C-terminal domain AMES_8303 PF01979 Amidohydrolase family AMES_8305 PF01263 Aldose 1-epimerase AMES_8306 PF09286 Pro-kumamolisin, activation domain AMES_8306 PF00082 Subtilase family AMES_8307 PF00440 Bacterial regulatory proteins, tetR family AMES_8308 PF00753 Metallo-beta-lactamase superfamily AMES_8309 PF00753 Metallo-beta-lactamase superfamily AMES_8311 PF05977 Transmembrane secretion effector AMES_8312 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AMES_8312 PF01243 Pyridoxamine 5'-phosphate oxidase AMES_8315 PF03583 Secretory lipase AMES_8316 PF01774 UreD urease accessory protein AMES_8317 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMES_8318 PF01730 UreF AMES_8319 PF00449 Urease alpha-subunit, N-terminal domain AMES_8319 PF01979 Amidohydrolase family AMES_8320 PF00699 Urease beta subunit AMES_8321 PF00547 Urease, gamma subunit AMES_8322 PF00285 Citrate synthase, C-terminal domain AMES_8324 PF00106 short chain dehydrogenase AMES_8324 PF00561 alpha/beta hydrolase fold AMES_8325 PF00005 ABC transporter AMES_8325 PF13732 Domain of unknown function (DUF4162) AMES_8327 PF07730 Histidine kinase AMES_8327 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_8327 PF05231 MASE1 AMES_8328 PF00196 Bacterial regulatory proteins, luxR family AMES_8328 PF00072 Response regulator receiver domain AMES_8329 PF00144 Beta-lactamase AMES_8331 PF09594 Glycosyltransferase family 87 AMES_8332 PF00266 Aminotransferase class-V AMES_8333 PF01979 Amidohydrolase family AMES_8334 PF12704 MacB-like periplasmic core domain AMES_8334 PF02687 FtsX-like permease family AMES_8334 PF00005 ABC transporter AMES_8335 PF02687 FtsX-like permease family AMES_8335 PF00005 ABC transporter AMES_8335 PF12704 MacB-like periplasmic core domain AMES_8338 PF00072 Response regulator receiver domain AMES_8338 PF00486 Transcriptional regulatory protein, C terminal AMES_8339 PF00672 HAMP domain AMES_8339 PF00512 His Kinase A (phospho-acceptor) domain AMES_8339 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_8340 PF11268 Protein of unknown function (DUF3071) AMES_8344 PF00588 SpoU rRNA Methylase family AMES_8347 PF01126 Heme oxygenase AMES_8348 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AMES_8348 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AMES_8349 PF00797 N-acetyltransferase AMES_8350 PF05977 Transmembrane secretion effector AMES_8351 PF01047 MarR family AMES_8353 PF00860 Permease family AMES_8356 PF11228 Protein of unknown function (DUF3027) AMES_8358 PF07690 Major Facilitator Superfamily AMES_8359 PF00313 'Cold-shock' DNA-binding domain AMES_8361 PF13419 Haloacid dehalogenase-like hydrolase AMES_8363 PF02909 Tetracyclin repressor-like, C-terminal domain AMES_8363 PF00440 Bacterial regulatory proteins, tetR family AMES_8364 PF00268 Ribonucleotide reductase, small chain AMES_8365 PF13193 AMP-binding enzyme C-terminal domain AMES_8365 PF00501 AMP-binding enzyme AMES_8367 PF08281 Sigma-70, region 4 AMES_8367 PF04542 Sigma-70 region 2 AMES_8368 PF03442 Carbohydrate binding domain X2 AMES_8368 PF00942 Cellulose binding domain AMES_8369 PF17862 AAA+ lid domain AMES_8369 PF06480 FtsH Extracellular AMES_8369 PF00004 ATPase family associated with various cellular activities (AAA) AMES_8369 PF01434 Peptidase family M41 AMES_8377 PF02567 Phenazine biosynthesis-like protein AMES_8378 PF00149 Calcineurin-like phosphoesterase AMES_8379 PF03733 Inner membrane component domain AMES_8380 PF13344 Haloacid dehalogenase-like hydrolase AMES_8381 PF07732 Multicopper oxidase AMES_8381 PF07731 Multicopper oxidase AMES_8382 PF00005 ABC transporter AMES_8382 PF03459 TOBE domain AMES_8383 PF00528 Binding-protein-dependent transport system inner membrane component AMES_8386 PF01047 MarR family AMES_8387 PF06463 Molybdenum Cofactor Synthesis C AMES_8387 PF04055 Radical SAM superfamily AMES_8389 PF06737 Transglycosylase-like domain AMES_8391 PF02391 MoaE protein AMES_8392 PF01967 MoaC family AMES_8393 PF03949 Malic enzyme, NAD binding domain AMES_8393 PF00390 Malic enzyme, N-terminal domain AMES_8398 PF03259 Roadblock/LC7 domain AMES_8401 PF03259 Roadblock/LC7 domain AMES_8402 PF00512 His Kinase A (phospho-acceptor) domain AMES_8402 PF08521 Two-component sensor kinase N-terminal AMES_8402 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_8403 PF09084 NMT1/THI5 like AMES_8404 PF00528 Binding-protein-dependent transport system inner membrane component AMES_8405 PF00528 Binding-protein-dependent transport system inner membrane component AMES_8406 PF00005 ABC transporter AMES_8407 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMES_8407 PF00205 Thiamine pyrophosphate enzyme, central domain AMES_8407 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMES_8409 PF04151 Bacterial pre-peptidase C-terminal domain AMES_8409 PF09286 Pro-kumamolisin, activation domain AMES_8412 PF03932 CutC family AMES_8416 PF04851 Type III restriction enzyme, res subunit AMES_8416 PF00271 Helicase conserved C-terminal domain AMES_8420 PF18374 Enolase N-terminal domain-like AMES_8420 PF13378 Enolase C-terminal domain-like AMES_8423 PF00118 TCP-1/cpn60 chaperonin family AMES_8424 PF00069 Protein kinase domain AMES_8424 PF13462 Thioredoxin AMES_8425 PF00313 'Cold-shock' DNA-binding domain AMES_8429 PF03453 MoeA N-terminal region (domain I and II) AMES_8429 PF03454 MoeA C-terminal region (domain IV) AMES_8429 PF00994 Probable molybdopterin binding domain AMES_8431 PF04226 Transglycosylase associated protein AMES_8432 PF02666 Phosphatidylserine decarboxylase AMES_8433 PF01066 CDP-alcohol phosphatidyltransferase AMES_8434 PF00004 ATPase family associated with various cellular activities (AAA) AMES_8434 PF17862 AAA+ lid domain AMES_8434 PF01434 Peptidase family M41 AMES_8437 PF01327 Polypeptide deformylase AMES_8438 PF00723 Glycosyl hydrolases family 15 AMES_8438 PF09137 Glucodextranase, domain N AMES_8439 PF13180 PDZ domain AMES_8440 PF13667 ThiC-associated domain AMES_8440 PF01964 Radical SAM ThiC family AMES_8441 PF08543 Phosphomethylpyrimidine kinase AMES_8443 PF08543 Phosphomethylpyrimidine kinase AMES_8444 PF01047 MarR family AMES_8445 PF05690 Thiazole biosynthesis protein ThiG AMES_8448 PF02581 Thiamine monophosphate synthase AMES_8450 PF13291 ACT domain AMES_8450 PF00291 Pyridoxal-phosphate dependent enzyme AMES_8451 PF07690 Major Facilitator Superfamily AMES_8452 PF00392 Bacterial regulatory proteins, gntR family AMES_8452 PF07702 UTRA domain AMES_8453 PF01380 SIS domain AMES_8454 PF01869 BadF/BadG/BcrA/BcrD ATPase family AMES_8456 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AMES_8462 PF00486 Transcriptional regulatory protein, C terminal AMES_8462 PF00931 NB-ARC domain AMES_8462 PF03704 Bacterial transcriptional activator domain AMES_8463 PF05721 Phytanoyl-CoA dioxygenase (PhyH) AMES_8464 PF06339 Ectoine synthase AMES_8465 PF00202 Aminotransferase class-III AMES_8466 PF00583 Acetyltransferase (GNAT) family AMES_8467 PF01734 Patatin-like phospholipase AMES_8467 PF11856 Protein of unknown function (DUF3376) AMES_8468 PF00107 Zinc-binding dehydrogenase AMES_8468 PF08240 Alcohol dehydrogenase GroES-like domain AMES_8469 PF04286 Protein of unknown function (DUF445) AMES_8470 PF01638 HxlR-like helix-turn-helix AMES_8472 PF06305 Lipopolysaccharide assembly protein A domain AMES_8478 PF00501 AMP-binding enzyme AMES_8478 PF13193 AMP-binding enzyme C-terminal domain AMES_8483 PF14310 Fibronectin type III-like domain AMES_8483 PF00933 Glycosyl hydrolase family 3 N terminal domain AMES_8483 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMES_8483 PF07691 PA14 domain AMES_8485 PF01638 HxlR-like helix-turn-helix AMES_8490 PF00005 ABC transporter AMES_8492 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMES_8493 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMES_8496 PF13380 CoA binding domain AMES_8498 PF00741 Gas vesicle protein AMES_8499 PF05121 Gas vesicle protein K AMES_8499 PF00741 Gas vesicle protein AMES_8500 PF00741 Gas vesicle protein AMES_8502 PF00741 Gas vesicle protein AMES_8504 PF00486 Transcriptional regulatory protein, C terminal AMES_8504 PF00072 Response regulator receiver domain AMES_8505 PF00672 HAMP domain AMES_8505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_8505 PF00512 His Kinase A (phospho-acceptor) domain AMES_8506 PF07685 CobB/CobQ-like glutamine amidotransferase domain AMES_8506 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMES_8507 PF02875 Mur ligase family, glutamate ligase domain AMES_8507 PF08245 Mur ligase middle domain AMES_8508 PF16197 Ketoacyl-synthetase C-terminal extension AMES_8508 PF08659 KR domain AMES_8508 PF08240 Alcohol dehydrogenase GroES-like domain AMES_8508 PF08990 Erythronolide synthase docking AMES_8508 PF00109 Beta-ketoacyl synthase, N-terminal domain AMES_8508 PF02801 Beta-ketoacyl synthase, C-terminal domain AMES_8508 PF00550 Phosphopantetheine attachment site AMES_8508 PF09277 Erythronolide synthase, docking AMES_8508 PF00698 Acyl transferase domain AMES_8508 PF14765 Polyketide synthase dehydratase AMES_8509 PF00440 Bacterial regulatory proteins, tetR family AMES_8509 PF18665 Tetracyclin repressor-like, C-terminal domain AMES_8511 PF02652 L-lactate permease AMES_8512 PF04542 Sigma-70 region 2 AMES_8512 PF08281 Sigma-70, region 4 AMES_8514 PF03795 YCII-related domain AMES_8515 PF03795 YCII-related domain AMES_8518 PF00512 His Kinase A (phospho-acceptor) domain AMES_8518 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_8518 PF00672 HAMP domain AMES_8525 PF08281 Sigma-70, region 4 AMES_8525 PF04542 Sigma-70 region 2 AMES_8525 PF12680 SnoaL-like domain AMES_8530 PF00082 Subtilase family AMES_8530 PF09286 Pro-kumamolisin, activation domain AMES_8535 PF13411 MerR HTH family regulatory protein AMES_8538 PF00982 Glycosyltransferase family 20 AMES_8542 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AMES_8542 PF00326 Prolyl oligopeptidase family AMES_8543 PF08281 Sigma-70, region 4 AMES_8543 PF04542 Sigma-70 region 2 AMES_8545 PF06745 KaiC AMES_8545 PF18073 Rubredoxin metal binding domain AMES_8547 PF02559 CarD-like/TRCF domain AMES_8548 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AMES_8549 PF02542 YgbB family AMES_8553 PF01406 tRNA synthetases class I (C) catalytic domain AMES_8553 PF09190 DALR domain AMES_8554 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMES_8554 PF00588 SpoU rRNA Methylase family AMES_8555 PF03062 MBOAT, membrane-bound O-acyltransferase family AMES_8560 PF00596 Class II Aldolase and Adducin N-terminal domain AMES_8564 PF00950 ABC 3 transport family AMES_8565 PF04286 Protein of unknown function (DUF445) AMES_8566 PF00005 ABC transporter AMES_8567 PF01297 Zinc-uptake complex component A periplasmic AMES_8568 PF00356 Bacterial regulatory proteins, lacI family AMES_8569 PF00484 Carbonic anhydrase AMES_8570 PF06722 Protein of unknown function (DUF1205) AMES_8571 PF00633 Helix-hairpin-helix motif AMES_8571 PF00730 HhH-GPD superfamily base excision DNA repair protein AMES_8574 PF17862 AAA+ lid domain AMES_8574 PF01434 Peptidase family M41 AMES_8574 PF00004 ATPase family associated with various cellular activities (AAA) AMES_8574 PF06480 FtsH Extracellular AMES_8575 PF01433 Peptidase family M1 domain AMES_8575 PF11838 ERAP1-like C-terminal domain AMES_8576 PF03992 Antibiotic biosynthesis monooxygenase AMES_8577 PF02146 Sir2 family AMES_8588 PF13732 Domain of unknown function (DUF4162) AMES_8588 PF00005 ABC transporter AMES_8589 PF01061 ABC-2 type transporter AMES_8590 PF00196 Bacterial regulatory proteins, luxR family AMES_8593 PF01470 Pyroglutamyl peptidase AMES_8594 PF00012 Hsp70 protein AMES_8595 PF13744 Helix-turn-helix domain AMES_8596 PF10431 C-terminal, D2-small domain, of ClpB protein AMES_8596 PF07724 AAA domain (Cdc48 subfamily) AMES_8596 PF17871 AAA lid domain AMES_8596 PF00004 ATPase family associated with various cellular activities (AAA) AMES_8596 PF02861 Clp amino terminal domain, pathogenicity island component AMES_8600 PF11774 Lsr2 AMES_8601 PF00152 tRNA synthetases class II (D, K and N) AMES_8601 PF01336 OB-fold nucleic acid binding domain AMES_8602 PF08241 Methyltransferase domain AMES_8603 PF03309 Type III pantothenate kinase AMES_8604 PF02261 Aspartate decarboxylase AMES_8605 PF02569 Pantoate-beta-alanine ligase AMES_8610 PF13411 MerR HTH family regulatory protein AMES_8611 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AMES_8612 PF02152 Dihydroneopterin aldolase AMES_8613 PF00809 Pterin binding enzyme AMES_8614 PF01227 GTP cyclohydrolase I AMES_8615 PF17862 AAA+ lid domain AMES_8615 PF01434 Peptidase family M41 AMES_8615 PF00004 ATPase family associated with various cellular activities (AAA) AMES_8621 PF01171 PP-loop family AMES_8621 PF09179 TilS substrate binding domain AMES_8624 PF00719 Inorganic pyrophosphatase AMES_8625 PF07690 Major Facilitator Superfamily AMES_8626 PF00464 Serine hydroxymethyltransferase AMES_8627 PF03946 Ribosomal protein L11, N-terminal domain AMES_8627 PF00298 Ribosomal protein L11, RNA binding domain AMES_8628 PF00132 Bacterial transferase hexapeptide (six repeats) AMES_8629 PF00246 Zinc carboxypeptidase AMES_8632 PF07110 EthD domain AMES_8643 PF07702 UTRA domain AMES_8643 PF00392 Bacterial regulatory proteins, gntR family AMES_8647 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AMES_8647 PF17854 FtsK alpha domain AMES_8647 PF01580 FtsK/SpoIIIE family AMES_8647 PF09397 Ftsk gamma domain AMES_8652 PF00589 Phage integrase family AMES_8654 PF12169 DNA polymerase III subunits gamma and tau domain III AMES_8655 PF02223 Thymidylate kinase AMES_8661 PF01131 DNA topoisomerase AMES_8661 PF01751 Toprim domain AMES_8661 PF13368 Topoisomerase C-terminal repeat AMES_8665 PF03030 Inorganic H+ pyrophosphatase AMES_8666 PF09369 Domain of unknown function (DUF1998) AMES_8666 PF00271 Helicase conserved C-terminal domain AMES_8666 PF00270 DEAD/DEAH box helicase AMES_8672 PF00437 Type II/IV secretion system protein AMES_8675 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMES_8675 PF00933 Glycosyl hydrolase family 3 N terminal domain AMES_8676 PF07075 Protein of unknown function (DUF1343) AMES_8677 PF00144 Beta-lactamase AMES_8678 PF01380 SIS domain AMES_8678 PF01418 Helix-turn-helix domain, rpiR family AMES_8679 PF01380 SIS domain AMES_8681 PF03824 High-affinity nickel-transport protein AMES_8682 PF00156 Phosphoribosyl transferase domain AMES_8684 PF13193 AMP-binding enzyme C-terminal domain AMES_8684 PF00501 AMP-binding enzyme AMES_8684 PF16177 Acetyl-coenzyme A synthetase N-terminus AMES_8688 PF00854 POT family AMES_8689 PF06965 Na+/H+ antiporter 1 AMES_8691 PF01494 FAD binding domain AMES_8692 PF00561 alpha/beta hydrolase fold AMES_8693 PF02674 Colicin V production protein AMES_8696 PF08534 Redoxin AMES_8697 PF00633 Helix-hairpin-helix motif AMES_8697 PF10576 Iron-sulfur binding domain of endonuclease III AMES_8697 PF00730 HhH-GPD superfamily base excision DNA repair protein AMES_8699 PF13545 Crp-like helix-turn-helix domain AMES_8699 PF00027 Cyclic nucleotide-binding domain AMES_8707 PF00135 Carboxylesterase family AMES_8708 PF16123 Hydroxyacylglutathione hydrolase C-terminus AMES_8708 PF00753 Metallo-beta-lactamase superfamily AMES_8715 PF02374 Anion-transporting ATPase AMES_8716 PF13614 AAA domain AMES_8717 PF02467 Transcription factor WhiB AMES_8718 PF17092 Penicillin-binding protein OB-like domain AMES_8718 PF00912 Transglycosylase AMES_8718 PF00905 Penicillin binding protein transpeptidase domain AMES_8719 PF00069 Protein kinase domain AMES_8719 PF14032 PknH-like extracellular domain AMES_8720 PF00149 Calcineurin-like phosphoesterase AMES_8721 PF13847 Methyltransferase domain AMES_8722 PF00326 Prolyl oligopeptidase family AMES_8728 PF00535 Glycosyl transferase family 2 AMES_8729 PF02222 ATP-grasp domain AMES_8731 PF02543 Carbamoyltransferase N-terminus AMES_8731 PF16861 Carbamoyltransferase C-terminus AMES_8734 PF00282 Pyridoxal-dependent decarboxylase conserved domain AMES_8735 PF00210 Ferritin-like domain AMES_8736 PF02566 OsmC-like protein AMES_8737 PF03358 NADPH-dependent FMN reductase AMES_8738 PF07859 alpha/beta hydrolase fold AMES_8741 PF07690 Major Facilitator Superfamily AMES_8744 PF01139 tRNA-splicing ligase RtcB AMES_8747 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMES_8747 PF02774 Semialdehyde dehydrogenase, dimerisation domain AMES_8748 PF01842 ACT domain AMES_8748 PF13840 ACT domain AMES_8748 PF00696 Amino acid kinase family AMES_8751 PF08502 LeuA allosteric (dimerisation) domain AMES_8751 PF00682 HMGL-like AMES_8756 PF03466 LysR substrate binding domain AMES_8756 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMES_8758 PF09335 SNARE associated Golgi protein AMES_8759 PF00892 EamA-like transporter family AMES_8761 PF03795 YCII-related domain AMES_8762 PF04542 Sigma-70 region 2 AMES_8762 PF08281 Sigma-70, region 4 AMES_8763 PF00005 ABC transporter AMES_8763 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMES_8764 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMES_8764 PF00005 ABC transporter AMES_8767 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMES_8769 PF00535 Glycosyl transferase family 2 AMES_8773 PF00535 Glycosyl transferase family 2 AMES_8775 PF13662 Toprim domain AMES_8775 PF02132 RecR protein AMES_8776 PF13457 GW (Gly-Tryp) dipeptide domain AMES_8776 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AMES_8777 PF02575 YbaB/EbfC DNA-binding family AMES_8778 PF01638 HxlR-like helix-turn-helix AMES_8780 PF01243 Pyridoxamine 5'-phosphate oxidase AMES_8781 PF13333 Integrase core domain AMES_8781 PF00665 Integrase core domain AMES_8781 PF13276 HTH-like domain AMES_8782 PF01527 Transposase AMES_8783 PF12169 DNA polymerase III subunits gamma and tau domain III AMES_8790 PF00005 ABC transporter AMES_8791 PF00528 Binding-protein-dependent transport system inner membrane component AMES_8793 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase AMES_8794 PF00512 His Kinase A (phospho-acceptor) domain AMES_8794 PF00672 HAMP domain AMES_8794 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_8795 PF00486 Transcriptional regulatory protein, C terminal AMES_8795 PF00072 Response regulator receiver domain AMES_8797 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_8797 PF07730 Histidine kinase AMES_8797 PF05384 Sensor protein DegS AMES_8798 PF00072 Response regulator receiver domain AMES_8798 PF00196 Bacterial regulatory proteins, luxR family AMES_8801 PF00440 Bacterial regulatory proteins, tetR family AMES_8801 PF13305 Tetracyclin repressor-like, C-terminal domain AMES_8802 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMES_8802 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMES_8802 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain AMES_8803 PF08310 LGFP repeat AMES_8803 PF00756 Putative esterase AMES_8805 PF00069 Protein kinase domain AMES_8805 PF03793 PASTA domain AMES_8811 PF01580 FtsK/SpoIIIE family AMES_8818 PF09587 Bacterial capsule synthesis protein PGA_cap AMES_8819 PF07858 Limonene-1,2-epoxide hydrolase catalytic domain AMES_8820 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AMES_8822 PF05368 NmrA-like family AMES_8825 PF14437 MafB19-like deaminase AMES_8827 PF05506 Domain of unknown function (DUF756) AMES_8827 PF04185 Phosphoesterase family AMES_8830 PF03928 Haem-degrading AMES_8832 PF02824 TGS domain AMES_8832 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMES_8832 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMES_8832 PF03129 Anticodon binding domain AMES_8833 PF07739 TipAS antibiotic-recognition domain AMES_8833 PF13411 MerR HTH family regulatory protein AMES_8834 PF00528 Binding-protein-dependent transport system inner membrane component AMES_8835 PF00528 Binding-protein-dependent transport system inner membrane component AMES_8836 PF00005 ABC transporter AMES_8836 PF08402 TOBE domain AMES_8838 PF07729 FCD domain AMES_8838 PF00392 Bacterial regulatory proteins, gntR family AMES_8839 PF00701 Dihydrodipicolinate synthetase family AMES_8842 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMES_8842 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMES_8844 PF13538 UvrD-like helicase C-terminal domain AMES_8850 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMES_8850 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMES_8852 PF01207 Dihydrouridine synthase (Dus) AMES_8853 PF17801 Alpha galactosidase C-terminal beta sandwich domain AMES_8853 PF16499 Alpha galactosidase A AMES_8854 PF00652 Ricin-type beta-trefoil lectin domain AMES_8854 PF00331 Glycosyl hydrolase family 10 AMES_8856 PF07702 UTRA domain AMES_8856 PF00392 Bacterial regulatory proteins, gntR family AMES_8857 PF03747 ADP-ribosylglycohydrolase AMES_8858 PF00294 pfkB family carbohydrate kinase AMES_8861 PF00561 alpha/beta hydrolase fold AMES_8862 PF00293 NUDIX domain AMES_8863 PF00072 Response regulator receiver domain AMES_8863 PF00990 Diguanylate cyclase, GGDEF domain AMES_8865 PF03816 Cell envelope-related transcriptional attenuator domain AMES_8866 PF01895 PhoU domain AMES_8867 PF00005 ABC transporter AMES_8868 PF00528 Binding-protein-dependent transport system inner membrane component AMES_8869 PF00528 Binding-protein-dependent transport system inner membrane component AMES_8870 PF12849 PBP superfamily domain AMES_8871 PF00583 Acetyltransferase (GNAT) family AMES_8872 PF00486 Transcriptional regulatory protein, C terminal AMES_8876 PF00581 Rhodanese-like domain AMES_8877 PF07210 Protein of unknown function (DUF1416) AMES_8878 PF08768 Domain of unknown function (DUF1794) AMES_8879 PF02682 Carboxyltransferase domain, subdomain C and D AMES_8880 PF02626 Carboxyltransferase domain, subdomain A and B AMES_8889 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMES_8889 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMES_8890 PF00005 ABC transporter AMES_8893 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMES_8893 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMES_8895 PF00472 RF-1 domain AMES_8897 PF00586 AIR synthase related protein, N-terminal domain AMES_8897 PF02769 AIR synthase related protein, C-terminal domain AMES_8898 PF00156 Phosphoribosyl transferase domain AMES_8905 PF01183 Glycosyl hydrolases family 25 AMES_8906 PF01183 Glycosyl hydrolases family 25 AMES_8910 PF00586 AIR synthase related protein, N-terminal domain AMES_8910 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AMES_8910 PF02769 AIR synthase related protein, C-terminal domain AMES_8911 PF00005 ABC transporter AMES_8911 PF00664 ABC transporter transmembrane region AMES_8912 PF00005 ABC transporter AMES_8912 PF00664 ABC transporter transmembrane region AMES_8914 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase AMES_8915 PF00732 GMC oxidoreductase AMES_8915 PF05199 GMC oxidoreductase AMES_8916 PF00171 Aldehyde dehydrogenase family AMES_8919 PF13350 Tyrosine phosphatase family AMES_8923 PF01259 SAICAR synthetase AMES_8925 PF00005 ABC transporter AMES_8926 PF00528 Binding-protein-dependent transport system inner membrane component AMES_8927 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMES_8928 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMES_8929 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMES_8930 PF10397 Adenylosuccinate lyase C-terminus AMES_8930 PF00206 Lyase AMES_8931 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMES_8931 PF13378 Enolase C-terminal domain-like AMES_8935 PF07729 FCD domain AMES_8935 PF00392 Bacterial regulatory proteins, gntR family AMES_8938 PF01212 Beta-eliminating lyase AMES_8939 PF13419 Haloacid dehalogenase-like hydrolase AMES_8942 PF00155 Aminotransferase class I and II AMES_8943 PF01464 Transglycosylase SLT domain AMES_8949 PF02843 Phosphoribosylglycinamide synthetase, C domain AMES_8949 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AMES_8949 PF02844 Phosphoribosylglycinamide synthetase, N domain AMES_8950 PF03009 Glycerophosphoryl diester phosphodiesterase family AMES_8955 PF00294 pfkB family carbohydrate kinase AMES_8956 PF00925 GTP cyclohydrolase II AMES_8956 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AMES_8957 PF07690 Major Facilitator Superfamily AMES_8958 PF00296 Luciferase-like monooxygenase AMES_8959 PF00999 Sodium/hydrogen exchanger family AMES_8961 PF00709 Adenylosuccinate synthetase AMES_8964 PF06722 Protein of unknown function (DUF1205) AMES_8968 PF00990 Diguanylate cyclase, GGDEF domain AMES_8968 PF00072 Response regulator receiver domain AMES_8969 PF00440 Bacterial regulatory proteins, tetR family AMES_8973 PF01116 Fructose-bisphosphate aldolase class-II AMES_8975 PF00248 Aldo/keto reductase family AMES_8977 PF00743 Flavin-binding monooxygenase-like AMES_8979 PF00111 2Fe-2S iron-sulfur cluster binding domain AMES_8983 PF01979 Amidohydrolase family AMES_8985 PF01850 PIN domain AMES_8986 PF09335 SNARE associated Golgi protein AMES_8988 PF01565 FAD binding domain AMES_8988 PF02913 FAD linked oxidases, C-terminal domain AMES_8989 PF01243 Pyridoxamine 5'-phosphate oxidase AMES_8991 PF07690 Major Facilitator Superfamily AMES_8993 PF09335 SNARE associated Golgi protein AMES_8995 PF03171 2OG-Fe(II) oxygenase superfamily AMES_8995 PF14226 non-haem dioxygenase in morphine synthesis N-terminal AMES_8997 PF00485 Phosphoribulokinase / Uridine kinase family AMES_8998 PF00294 pfkB family carbohydrate kinase AMES_8999 PF00005 ABC transporter AMES_9000 PF02653 Branched-chain amino acid transport system / permease component AMES_9001 PF13407 Periplasmic binding protein domain AMES_9002 PF00356 Bacterial regulatory proteins, lacI family AMES_9003 PF00356 Bacterial regulatory proteins, lacI family AMES_9005 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMES_9005 PF01568 Molydopterin dinucleotide binding domain AMES_9005 PF00384 Molybdopterin oxidoreductase AMES_9011 PF12680 SnoaL-like domain AMES_9011 PF04542 Sigma-70 region 2 AMES_9011 PF08281 Sigma-70, region 4 AMES_9012 PF00156 Phosphoribosyl transferase domain AMES_9014 PF00005 ABC transporter AMES_9015 PF00106 short chain dehydrogenase AMES_9018 PF07724 AAA domain (Cdc48 subfamily) AMES_9018 PF00004 ATPase family associated with various cellular activities (AAA) AMES_9018 PF02861 Clp amino terminal domain, pathogenicity island component AMES_9018 PF10431 C-terminal, D2-small domain, of ClpB protein AMES_9018 PF17871 AAA lid domain AMES_9021 PF00175 Oxidoreductase NAD-binding domain AMES_9021 PF00111 2Fe-2S iron-sulfur cluster binding domain AMES_9021 PF00970 Oxidoreductase FAD-binding domain AMES_9022 PF00111 2Fe-2S iron-sulfur cluster binding domain AMES_9022 PF00970 Oxidoreductase FAD-binding domain AMES_9022 PF00175 Oxidoreductase NAD-binding domain AMES_9023 PF01738 Dienelactone hydrolase family AMES_9024 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AMES_9026 PF13411 MerR HTH family regulatory protein AMES_9027 PF00684 DnaJ central domain AMES_9027 PF00226 DnaJ domain AMES_9027 PF01556 DnaJ C terminal domain AMES_9028 PF01025 GrpE AMES_9029 PF00012 Hsp70 protein AMES_9031 PF01161 Phosphatidylethanolamine-binding protein AMES_9036 PF02754 Cysteine-rich domain AMES_9036 PF13183 4Fe-4S dicluster domain AMES_9036 PF02665 Nitrate reductase gamma subunit AMES_9039 PF00188 Cysteine-rich secretory protein family AMES_9042 PF01494 FAD binding domain AMES_9043 PF00692 dUTPase AMES_9046 PF08281 Sigma-70, region 4 AMES_9046 PF04542 Sigma-70 region 2 AMES_9047 PF03795 YCII-related domain AMES_9049 PF00067 Cytochrome P450 AMES_9053 PF00149 Calcineurin-like phosphoesterase AMES_9054 PF00364 Biotin-requiring enzyme AMES_9054 PF00561 alpha/beta hydrolase fold AMES_9055 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMES_9055 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMES_9057 PF03167 Uracil DNA glycosylase superfamily AMES_9058 PF00072 Response regulator receiver domain AMES_9058 PF00196 Bacterial regulatory proteins, luxR family AMES_9059 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMES_9059 PF02770 Acyl-CoA dehydrogenase, middle domain AMES_9059 PF12806 Acetyl-CoA dehydrogenase C-terminal like AMES_9059 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMES_9061 PF07690 Major Facilitator Superfamily AMES_9065 PF00166 Chaperonin 10 Kd subunit AMES_9070 PF00005 ABC transporter AMES_9071 PF00528 Binding-protein-dependent transport system inner membrane component AMES_9072 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMES_9073 PF04174 A circularly permuted ATPgrasp AMES_9076 PF01841 Transglutaminase-like superfamily AMES_9076 PF08379 Bacterial transglutaminase-like N-terminal region AMES_9077 PF07687 Peptidase dimerisation domain AMES_9077 PF01546 Peptidase family M20/M25/M40 AMES_9078 PF00440 Bacterial regulatory proteins, tetR family AMES_9079 PF00676 Dehydrogenase E1 component AMES_9080 PF02779 Transketolase, pyrimidine binding domain AMES_9080 PF02780 Transketolase, C-terminal domain AMES_9081 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMES_9081 PF00364 Biotin-requiring enzyme AMES_9081 PF02817 e3 binding domain AMES_9084 PF00005 ABC transporter AMES_9086 PF04186 FxsA cytoplasmic membrane protein AMES_9094 PF01575 MaoC like domain AMES_9095 PF08362 YcdC-like protein, C-terminal region AMES_9095 PF00440 Bacterial regulatory proteins, tetR family AMES_9097 PF00108 Thiolase, N-terminal domain AMES_9097 PF02803 Thiolase, C-terminal domain AMES_9104 PF00474 Sodium:solute symporter family AMES_9107 PF00561 alpha/beta hydrolase fold AMES_9112 PF00005 ABC transporter AMES_9114 PF00296 Luciferase-like monooxygenase AMES_9115 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain AMES_9115 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain AMES_9118 PF01025 GrpE AMES_9120 PF00350 Dynamin family AMES_9121 PF07730 Histidine kinase AMES_9122 PF00072 Response regulator receiver domain AMES_9122 PF00196 Bacterial regulatory proteins, luxR family AMES_9125 PF00005 ABC transporter AMES_9127 PF00005 ABC transporter AMES_9130 PF02390 Putative methyltransferase AMES_9132 PF00005 ABC transporter AMES_9133 PF05384 Sensor protein DegS AMES_9133 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMES_9133 PF07730 Histidine kinase AMES_9135 PF00072 Response regulator receiver domain AMES_9135 PF00196 Bacterial regulatory proteins, luxR family AMES_9137 PF00106 short chain dehydrogenase AMES_9138 PF01979 Amidohydrolase family AMES_9139 PF04650 YSIRK type signal peptide AMES_9139 PF17210 SdrD B-like domain AMES_9139 PF00746 LPXTG cell wall anchor motif AMES_9139 PF17961 Bacterial Ig domain AMES_9141 PF07690 Major Facilitator Superfamily AMES_9142 PF01047 MarR family AMES_9144 PF13419 Haloacid dehalogenase-like hydrolase AMES_9145 PF08281 Sigma-70, region 4 AMES_9145 PF04542 Sigma-70 region 2 AMES_9146 PF01658 Myo-inositol-1-phosphate synthase AMES_9147 PF03551 Transcriptional regulator PadR-like family AMES_9148 PF17249 Family of unknown function (DUF5318) AMES_9149 PF00912 Transglycosylase AMES_9149 PF00905 Penicillin binding protein transpeptidase domain AMES_9150 PF00905 Penicillin binding protein transpeptidase domain AMES_9150 PF00912 Transglycosylase AMES_9151 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMES_9151 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMES_9152 PF01325 Iron dependent repressor, N-terminal DNA binding domain AMES_9152 PF00480 ROK family AMES_9154 PF01261 Xylose isomerase-like TIM barrel AMES_9158 PF01250 Ribosomal protein S6 AMES_9159 PF00436 Single-strand binding protein family AMES_9160 PF01084 Ribosomal protein S18 AMES_9161 PF03948 Ribosomal protein L9, C-terminal domain AMES_9161 PF01281 Ribosomal protein L9, N-terminal domain AMES_9167 PF03796 DnaB-like helicase C terminal domain AMES_9167 PF14528 LAGLIDADG-like domain AMES_9167 PF00772 DnaB-like helicase N terminal domain AMES_9167 PF03796 DnaB-like helicase C terminal domain AMES_9167 PF14528 LAGLIDADG-like domain AMES_9167 PF00772 DnaB-like helicase N terminal domain AMES_9169 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AMES_9171 PF01594 AI-2E family transporter AMES_9173 PF00196 Bacterial regulatory proteins, luxR family AMES_9173 PF00072 Response regulator receiver domain AMES_9176 PF07690 Major Facilitator Superfamily AMES_9177 PF00391 PEP-utilising enzyme, mobile domain AMES_9177 PF02896 PEP-utilising enzyme, TIM barrel domain AMES_9177 PF05524 PEP-utilising enzyme, N-terminal AMES_9179 PF00294 pfkB family carbohydrate kinase AMES_9190 PF13305 Tetracyclin repressor-like, C-terminal domain AMES_9190 PF00440 Bacterial regulatory proteins, tetR family AMES_9191 PF08264 Anticodon-binding domain of tRNA AMES_9191 PF13603 Leucyl-tRNA synthetase, Domain 2 AMES_9191 PF09334 tRNA synthetases class I (M) AMES_9193 PF02622 Uncharacterized ACR, COG1678 AMES_9195 PF07690 Major Facilitator Superfamily AMES_9202 PF03747 ADP-ribosylglycohydrolase AMES_9207 PF13735 tRNA nucleotidyltransferase domain 2 putative AMES_9207 PF01743 Poly A polymerase head domain AMES_9207 PF12627 Probable RNA and SrmB- binding site of polymerase A AMES_9208 PF00293 NUDIX domain AMES_9210 PF03023 Lipid II flippase MurJ AMES_9212 PF08281 Sigma-70, region 4 AMES_9212 PF04542 Sigma-70 region 2 AMES_9214 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMES_9215 PF00085 Thioredoxin AMES_9215 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMES_9216 PF01471 Putative peptidoglycan binding domain AMES_9216 PF01520 N-acetylmuramoyl-L-alanine amidase AMES_9218 PF00155 Aminotransferase class I and II AMES_9219 PF07478 D-ala D-ala ligase C-terminus AMES_9219 PF01820 D-ala D-ala ligase N-terminus AMES_9220 PF02195 ParB-like nuclease domain AMES_9220 PF17762 HTH domain found in ParB protein AMES_9221 PF13614 AAA domain AMES_9222 PF02527 rRNA small subunit methyltransferase G AMES_9225 PF02096 60Kd inner membrane protein AMES_9226 PF01809 Putative membrane protein insertion efficiency factor AMES_9227 PF00468 Ribosomal protein L34