locus-tag class description AMED_0001 PF08299 Bacterial dnaA protein helix-turn-helix AMED_0001 PF00308 Bacterial dnaA protein AMED_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain AMED_0002 PF02767 DNA polymerase III beta subunit, central domain AMED_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain AMED_0003 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMED_0003 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AMED_0004 PF02463 RecF/RecN/SMC N terminal domain AMED_0005 PF05258 Dna[CI] antecedent, DciA AMED_0006 PF01751 Toprim domain AMED_0006 PF00986 DNA gyrase B subunit, carboxyl terminus AMED_0006 PF00204 DNA gyrase B AMED_0006 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_0007 PF00521 DNA gyrase/topoisomerase IV, subunit A AMED_0007 PF03989 DNA gyrase C-terminal domain, beta-propeller AMED_0008 PF12089 Transmembrane domain of unknown function (DUF3566) AMED_0010 PF00589 Phage integrase family AMED_0025 PF00005 ABC transporter AMED_0025 PF13732 Domain of unknown function (DUF4162) AMED_0026 PF01061 ABC-2 type transporter AMED_0027 PF00196 Bacterial regulatory proteins, luxR family AMED_0028 PF00067 Cytochrome P450 AMED_0029 PF00561 alpha/beta hydrolase fold AMED_0030 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AMED_0030 PF01243 Pyridoxamine 5'-phosphate oxidase AMED_0035 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMED_0036 PF01694 Rhomboid family AMED_0038 PF06781 Cell division protein CrgA AMED_0039 PF04203 Sortase domain AMED_0043 PF00005 ABC transporter AMED_0045 PF00196 Bacterial regulatory proteins, luxR family AMED_0045 PF00072 Response regulator receiver domain AMED_0046 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_0047 PF00117 Glutamine amidotransferase class-I AMED_0048 PF00005 ABC transporter AMED_0051 PF03793 PASTA domain AMED_0051 PF00069 Protein kinase domain AMED_0052 PF00069 Protein kinase domain AMED_0053 PF00905 Penicillin binding protein transpeptidase domain AMED_0054 PF01098 Cell cycle protein AMED_0056 PF16697 Inner membrane component of T3SS, cytoplasmic domain AMED_0057 PF12401 Protein of unknown function (DUF2662) AMED_0057 PF00498 FHA domain AMED_0060 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMED_0062 PF01053 Cys/Met metabolism PLP-dependent enzyme AMED_0066 PF00392 Bacterial regulatory proteins, gntR family AMED_0066 PF07729 FCD domain AMED_0067 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMED_0068 PF00528 Binding-protein-dependent transport system inner membrane component AMED_0070 PF00005 ABC transporter AMED_0070 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMED_0071 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMED_0071 PF00005 ABC transporter AMED_0072 PF00171 Aldehyde dehydrogenase family AMED_0074 PF01425 Amidase AMED_0078 PF03328 HpcH/HpaI aldolase/citrate lyase family AMED_0079 PF03328 HpcH/HpaI aldolase/citrate lyase family AMED_0081 PF13460 NAD(P)H-binding AMED_0082 PF14572 Phosphoribosyl synthetase-associated domain AMED_0082 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AMED_0083 PF01565 FAD binding domain AMED_0083 PF04030 D-arabinono-1,4-lactone oxidase AMED_0085 PF00440 Bacterial regulatory proteins, tetR family AMED_0085 PF13977 BetI-type transcriptional repressor, C-terminal AMED_0086 PF00232 Glycosyl hydrolase family 1 AMED_0093 PF04234 CopC domain AMED_0093 PF13115 YtkA-like AMED_0093 PF05425 Copper resistance protein D AMED_0096 PF00528 Binding-protein-dependent transport system inner membrane component AMED_0097 PF00571 CBS domain AMED_0097 PF00005 ABC transporter AMED_0098 PF00528 Binding-protein-dependent transport system inner membrane component AMED_0099 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AMED_0103 PF01209 ubiE/COQ5 methyltransferase family AMED_0104 PF00106 short chain dehydrogenase AMED_0105 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMED_0105 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMED_0105 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMED_0108 PF01609 Transposase DDE domain AMED_0108 PF13808 DDE_Tnp_1-associated AMED_0111 PF07690 Major Facilitator Superfamily AMED_0113 PF07730 Histidine kinase AMED_0114 PF00196 Bacterial regulatory proteins, luxR family AMED_0114 PF00072 Response regulator receiver domain AMED_0115 PF16363 GDP-mannose 4,6 dehydratase AMED_0120 PF00534 Glycosyl transferases group 1 AMED_0130 PF06827 Zinc finger found in FPG and IleRS AMED_0130 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMED_0131 PF07694 5TMR of 5TMR-LYT AMED_0131 PF06580 Histidine kinase AMED_0132 PF06965 Na+/H+ antiporter 1 AMED_0132 PF01343 Peptidase family S49 AMED_0134 PF04397 LytTr DNA-binding domain AMED_0134 PF00072 Response regulator receiver domain AMED_0136 PF00474 Sodium:solute symporter family AMED_0137 PF01206 Sulfurtransferase TusA AMED_0137 PF00581 Rhodanese-like domain AMED_0140 PF07690 Major Facilitator Superfamily AMED_0141 PF02585 GlcNAc-PI de-N-acetylase AMED_0142 PF00067 Cytochrome P450 AMED_0145 PF04539 Sigma-70 region 3 AMED_0145 PF04545 Sigma-70, region 4 AMED_0145 PF04542 Sigma-70 region 2 AMED_0147 PF00210 Ferritin-like domain AMED_0163 PF01654 Cytochrome bd terminal oxidase subunit I AMED_0164 PF02322 Cytochrome bd terminal oxidase subunit II AMED_0165 PF00664 ABC transporter transmembrane region AMED_0165 PF00005 ABC transporter AMED_0166 PF07730 Histidine kinase AMED_0166 PF13185 GAF domain AMED_0166 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_0166 PF13492 GAF domain AMED_0167 PF00196 Bacterial regulatory proteins, luxR family AMED_0167 PF00072 Response regulator receiver domain AMED_0176 PF04434 SWIM zinc finger AMED_0179 PF00485 Phosphoribulokinase / Uridine kinase family AMED_0180 PF01661 Macro domain AMED_0181 PF01842 ACT domain AMED_0181 PF00800 Prephenate dehydratase AMED_0182 PF00300 Histidine phosphatase superfamily (branch 1) AMED_0189 PF03738 Glutathionylspermidine synthase preATP-grasp AMED_0191 PF00561 alpha/beta hydrolase fold AMED_0192 PF00202 Aminotransferase class-III AMED_0193 PF02403 Seryl-tRNA synthetase N-terminal domain AMED_0193 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMED_0195 PF01266 FAD dependent oxidoreductase AMED_0199 PF00196 Bacterial regulatory proteins, luxR family AMED_0200 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMED_0201 PF01370 NAD dependent epimerase/dehydratase family AMED_0203 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AMED_0203 PF00132 Bacterial transferase hexapeptide (six repeats) AMED_0204 PF04542 Sigma-70 region 2 AMED_0204 PF04545 Sigma-70, region 4 AMED_0206 PF04389 Peptidase family M28 AMED_0206 PF04151 Bacterial pre-peptidase C-terminal domain AMED_0208 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMED_0209 PF00132 Bacterial transferase hexapeptide (six repeats) AMED_0209 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AMED_0212 PF13193 AMP-binding enzyme C-terminal domain AMED_0212 PF00501 AMP-binding enzyme AMED_0220 PF01553 Acyltransferase AMED_0222 PF00296 Luciferase-like monooxygenase AMED_0224 PF03275 UDP-galactopyranose mutase AMED_0225 PF01569 PAP2 superfamily AMED_0226 PF01040 UbiA prenyltransferase family AMED_0229 PF00106 short chain dehydrogenase AMED_0230 PF04030 D-arabinono-1,4-lactone oxidase AMED_0230 PF01565 FAD binding domain AMED_0231 PF04138 GtrA-like protein AMED_0232 PF17994 Galactofuranosyltransferase 2 N-terminal AMED_0239 PF00005 ABC transporter AMED_0240 PF01061 ABC-2 type transporter AMED_0241 PF10759 Protein of unknown function (DUF2587) AMED_0242 PF00266 Aminotransferase class-V AMED_0243 PF00698 Acyl transferase domain AMED_0243 PF16197 Ketoacyl-synthetase C-terminal extension AMED_0243 PF08240 Alcohol dehydrogenase GroES-like domain AMED_0243 PF00107 Zinc-binding dehydrogenase AMED_0243 PF00550 Phosphopantetheine attachment site AMED_0243 PF08659 KR domain AMED_0243 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_0243 PF14765 Polyketide synthase dehydratase AMED_0243 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_0244 PF04389 Peptidase family M28 AMED_0244 PF02225 PA domain AMED_0245 PF04228 Putative neutral zinc metallopeptidase AMED_0253 PF00106 short chain dehydrogenase AMED_0255 PF00072 Response regulator receiver domain AMED_0256 PF00989 PAS fold AMED_0256 PF17203 Single cache domain 3 AMED_0256 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AMED_0256 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_0257 PF00005 ABC transporter AMED_0262 PF13191 AAA ATPase domain AMED_0262 PF00211 Adenylate and Guanylate cyclase catalytic domain AMED_0263 PF02983 Alpha-lytic protease prodomain AMED_0264 PF04686 Streptomyces sporulation and cell division protein, SsgA AMED_0265 PF01037 Lrp/AsnC ligand binding domain AMED_0266 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMED_0266 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMED_0267 PF00672 HAMP domain AMED_0267 PF00211 Adenylate and Guanylate cyclase catalytic domain AMED_0268 PF04072 Leucine carboxyl methyltransferase AMED_0269 PF07729 FCD domain AMED_0269 PF00392 Bacterial regulatory proteins, gntR family AMED_0272 PF00155 Aminotransferase class I and II AMED_0273 PF01738 Dienelactone hydrolase family AMED_0274 PF13193 AMP-binding enzyme C-terminal domain AMED_0274 PF00501 AMP-binding enzyme AMED_0275 PF00152 tRNA synthetases class II (D, K and N) AMED_0275 PF09924 Uncharacterised conserved protein (DUF2156) AMED_0275 PF01336 OB-fold nucleic acid binding domain AMED_0275 PF16995 Transmembrane region of lysyl-tRNA synthetase AMED_0277 PF00704 Glycosyl hydrolases family 18 AMED_0277 PF00041 Fibronectin type III domain AMED_0277 PF00553 Cellulose binding domain AMED_0279 PF00202 Aminotransferase class-III AMED_0280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_0280 PF03466 LysR substrate binding domain AMED_0284 PF03990 G5-linked-Ubiquitin-like domain AMED_0284 PF07501 G5 domain AMED_0284 PF06725 3D domain AMED_0286 PF00248 Aldo/keto reductase family AMED_0289 PF04545 Sigma-70, region 4 AMED_0289 PF04539 Sigma-70 region 3 AMED_0289 PF04542 Sigma-70 region 2 AMED_0290 PF13581 Histidine kinase-like ATPase domain AMED_0291 PF02467 Transcription factor WhiB AMED_0299 PF00005 ABC transporter AMED_0299 PF13732 Domain of unknown function (DUF4162) AMED_0310 PF02153 Prephenate dehydrogenase AMED_0311 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_0311 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMED_0315 PF01047 MarR family AMED_0316 PF07859 alpha/beta hydrolase fold AMED_0321 PF10397 Adenylosuccinate lyase C-terminus AMED_0321 PF00206 Lyase AMED_0322 PF06736 Protein of unknown function (DUF1211) AMED_0323 PF04978 Protein of unknown function (DUF664) AMED_0325 PF00625 Guanylate kinase AMED_0330 PF00300 Histidine phosphatase superfamily (branch 1) AMED_0336 PF00069 Protein kinase domain AMED_0338 PF00465 Iron-containing alcohol dehydrogenase AMED_0339 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMED_0339 PF00205 Thiamine pyrophosphate enzyme, central domain AMED_0339 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMED_0341 PF00313 'Cold-shock' DNA-binding domain AMED_0343 PF01513 ATP-NAD kinase AMED_0344 PF00676 Dehydrogenase E1 component AMED_0347 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMED_0348 PF16919 Protein kinase G rubredoxin domain AMED_0348 PF00069 Protein kinase domain AMED_0348 PF16918 Protein kinase G tetratricopeptide repeat AMED_0351 PF14659 Phage integrase, N-terminal SAM-like domain AMED_0351 PF00589 Phage integrase family AMED_0352 PF12728 Helix-turn-helix domain AMED_0353 PF12307 Protein of unknown function (DUF3631) AMED_0360 PF00436 Single-strand binding protein family AMED_0370 PF04686 Streptomyces sporulation and cell division protein, SsgA AMED_0371 PF13344 Haloacid dehalogenase-like hydrolase AMED_0371 PF00293 NUDIX domain AMED_0379 PF13649 Methyltransferase domain AMED_0381 PF00797 N-acetyltransferase AMED_0382 PF00990 Diguanylate cyclase, GGDEF domain AMED_0382 PF03707 Bacterial signalling protein N terminal repeat AMED_0382 PF00563 EAL domain AMED_0387 PF00860 Permease family AMED_0388 PF01717 Cobalamin-independent synthase, Catalytic domain AMED_0390 PF09339 IclR helix-turn-helix domain AMED_0390 PF01614 Bacterial transcriptional regulator AMED_0391 PF14759 Reductase C-terminal AMED_0391 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_0392 PF01494 FAD binding domain AMED_0393 PF02861 Clp amino terminal domain, pathogenicity island component AMED_0394 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMED_0394 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AMED_0406 PF00561 alpha/beta hydrolase fold AMED_0408 PF09995 Uncharacterized protein conserved in bacteria (DUF2236) AMED_0410 PF01425 Amidase AMED_0412 PF00291 Pyridoxal-phosphate dependent enzyme AMED_0415 PF02861 Clp amino terminal domain, pathogenicity island component AMED_0417 PF00392 Bacterial regulatory proteins, gntR family AMED_0417 PF00155 Aminotransferase class I and II AMED_0419 PF00155 Aminotransferase class I and II AMED_0420 PF04286 Protein of unknown function (DUF445) AMED_0424 PF01202 Shikimate kinase AMED_0426 PF01381 Helix-turn-helix AMED_0428 PF10724 Protein of unknown function (DUF2516) AMED_0430 PF02423 Ornithine cyclodeaminase/mu-crystallin family AMED_0431 PF00221 Aromatic amino acid lyase AMED_0436 PF00528 Binding-protein-dependent transport system inner membrane component AMED_0438 PF08241 Methyltransferase domain AMED_0439 PF01047 MarR family AMED_0441 PF16884 N-terminal domain of oxidoreductase AMED_0441 PF00107 Zinc-binding dehydrogenase AMED_0444 PF08240 Alcohol dehydrogenase GroES-like domain AMED_0444 PF00107 Zinc-binding dehydrogenase AMED_0445 PF00551 Formyl transferase AMED_0450 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AMED_0450 PF01565 FAD binding domain AMED_0451 PF03734 L,D-transpeptidase catalytic domain AMED_0451 PF17964 Bacterial Ig domain AMED_0452 PF00561 alpha/beta hydrolase fold AMED_0453 PF13439 Glycosyltransferase Family 4 AMED_0453 PF00534 Glycosyl transferases group 1 AMED_0454 PF10722 Putative bacterial sensory transduction regulator AMED_0456 PF00300 Histidine phosphatase superfamily (branch 1) AMED_0458 PF00248 Aldo/keto reductase family AMED_0459 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_0459 PF00512 His Kinase A (phospho-acceptor) domain AMED_0460 PF00072 Response regulator receiver domain AMED_0460 PF00486 Transcriptional regulatory protein, C terminal AMED_0461 PF02541 Ppx/GppA phosphatase family AMED_0464 PF01261 Xylose isomerase-like TIM barrel AMED_0466 PF14748 Pyrroline-5-carboxylate reductase dimerisation AMED_0466 PF03807 NADP oxidoreductase coenzyme F420-dependent AMED_0467 PF12728 Helix-turn-helix domain AMED_0468 PF01370 NAD dependent epimerase/dehydratase family AMED_0469 PF01553 Acyltransferase AMED_0471 PF00072 Response regulator receiver domain AMED_0471 PF00196 Bacterial regulatory proteins, luxR family AMED_0475 PF04542 Sigma-70 region 2 AMED_0475 PF08281 Sigma-70, region 4 AMED_0476 PF13193 AMP-binding enzyme C-terminal domain AMED_0476 PF00501 AMP-binding enzyme AMED_0477 PF05768 Glutaredoxin-like domain (DUF836) AMED_0479 PF02629 CoA binding domain AMED_0479 PF06971 Putative DNA-binding protein N-terminus AMED_0480 PF01488 Shikimate / quinate 5-dehydrogenase AMED_0480 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AMED_0480 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AMED_0481 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AMED_0481 PF03900 Porphobilinogen deaminase, C-terminal domain AMED_0482 PF10414 Sirohaem synthase dimerisation region AMED_0482 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMED_0482 PF14824 Sirohaem biosynthesis protein central AMED_0483 PF16363 GDP-mannose 4,6 dehydratase AMED_0485 PF00490 Delta-aminolevulinic acid dehydratase AMED_0489 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMED_0490 PF12704 MacB-like periplasmic core domain AMED_0490 PF00005 ABC transporter AMED_0490 PF02687 FtsX-like permease family AMED_0491 PF00005 ABC transporter AMED_0491 PF02687 FtsX-like permease family AMED_0491 PF12704 MacB-like periplasmic core domain AMED_0494 PF00202 Aminotransferase class-III AMED_0495 PF00300 Histidine phosphatase superfamily (branch 1) AMED_0496 PF00578 AhpC/TSA family AMED_0497 PF02683 Cytochrome C biogenesis protein transmembrane region AMED_0499 PF01578 Cytochrome C assembly protein AMED_0500 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMED_0503 PF01037 Lrp/AsnC ligand binding domain AMED_0506 PF01040 UbiA prenyltransferase family AMED_0508 PF13193 AMP-binding enzyme C-terminal domain AMED_0508 PF00501 AMP-binding enzyme AMED_0509 PF00378 Enoyl-CoA hydratase/isomerase AMED_0510 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMED_0510 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMED_0511 PF11838 ERAP1-like C-terminal domain AMED_0511 PF01433 Peptidase family M1 domain AMED_0513 PF00459 Inositol monophosphatase family AMED_0514 PF13439 Glycosyltransferase Family 4 AMED_0514 PF00534 Glycosyl transferases group 1 AMED_0515 PF00534 Glycosyl transferases group 1 AMED_0515 PF13579 Glycosyl transferase 4-like domain AMED_0518 PF01209 ubiE/COQ5 methyltransferase family AMED_0519 PF01494 FAD binding domain AMED_0520 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AMED_0521 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AMED_0522 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AMED_0523 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AMED_0525 PF10531 SLBB domain AMED_0525 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AMED_0525 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMED_0526 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMED_0526 PF01568 Molydopterin dinucleotide binding domain AMED_0526 PF00384 Molybdopterin oxidoreductase AMED_0527 PF00146 NADH dehydrogenase AMED_0528 PF12838 4Fe-4S dicluster domain AMED_0529 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AMED_0530 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AMED_0531 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AMED_0531 PF00361 Proton-conducting membrane transporter AMED_0532 PF00361 Proton-conducting membrane transporter AMED_0533 PF00361 Proton-conducting membrane transporter AMED_0537 PF00348 Polyprenyl synthetase AMED_0540 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMED_0541 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AMED_0541 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AMED_0541 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AMED_0542 PF00378 Enoyl-CoA hydratase/isomerase AMED_0543 PF01037 Lrp/AsnC ligand binding domain AMED_0547 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMED_0547 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMED_0547 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMED_0548 PF00534 Glycosyl transferases group 1 AMED_0548 PF13439 Glycosyltransferase Family 4 AMED_0551 PF00733 Asparagine synthase AMED_0551 PF13537 Glutamine amidotransferase domain AMED_0552 PF00107 Zinc-binding dehydrogenase AMED_0556 PF13439 Glycosyltransferase Family 4 AMED_0556 PF00534 Glycosyl transferases group 1 AMED_0560 PF00202 Aminotransferase class-III AMED_0561 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AMED_0563 PF00535 Glycosyl transferase family 2 AMED_0565 PF16221 winged helix-turn-helix AMED_0565 PF16254 Domain of unknown function (DUF4910) AMED_0565 PF09940 Domain of unknown function (DUF2172) AMED_0566 PF16363 GDP-mannose 4,6 dehydratase AMED_0568 PF00483 Nucleotidyl transferase AMED_0569 PF08484 C-methyltransferase C-terminal domain AMED_0569 PF08421 Putative zinc binding domain AMED_0571 PF00296 Luciferase-like monooxygenase AMED_0573 PF01435 Peptidase family M48 AMED_0576 PF00483 Nucleotidyl transferase AMED_0579 PF04461 Protein of unknown function (DUF520) AMED_0581 PF08241 Methyltransferase domain AMED_0582 PF05362 Lon protease (S16) C-terminal proteolytic domain AMED_0582 PF00004 ATPase family associated with various cellular activities (AAA) AMED_0582 PF02190 ATP-dependent protease La (LON) substrate-binding domain AMED_0585 PF00563 EAL domain AMED_0585 PF00990 Diguanylate cyclase, GGDEF domain AMED_0585 PF03707 Bacterial signalling protein N terminal repeat AMED_0586 PF00471 Ribosomal protein L33 AMED_0587 PF13452 N-terminal half of MaoC dehydratase AMED_0591 PF00392 Bacterial regulatory proteins, gntR family AMED_0591 PF00155 Aminotransferase class I and II AMED_0592 PF00296 Luciferase-like monooxygenase AMED_0593 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AMED_0594 PF02357 Transcription termination factor nusG AMED_0595 PF00298 Ribosomal protein L11, RNA binding domain AMED_0595 PF03946 Ribosomal protein L11, N-terminal domain AMED_0596 PF00687 Ribosomal protein L1p/L10e family AMED_0597 PF00561 alpha/beta hydrolase fold AMED_0599 PF00466 Ribosomal protein L10 AMED_0600 PF00542 Ribosomal protein L7/L12 C-terminal domain AMED_0600 PF16320 Ribosomal protein L7/L12 dimerisation domain AMED_0601 PF00005 ABC transporter AMED_0603 PF02405 Permease MlaE AMED_0608 PF02470 MlaD protein AMED_0613 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMED_0613 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMED_0616 PF00067 Cytochrome P450 AMED_0617 PF08990 Erythronolide synthase docking AMED_0617 PF16197 Ketoacyl-synthetase C-terminal extension AMED_0617 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_0617 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_0617 PF00975 Thioesterase domain AMED_0617 PF00698 Acyl transferase domain AMED_0617 PF00550 Phosphopantetheine attachment site AMED_0617 PF18369 Polyketide synthase dimerisation element domain AMED_0617 PF08659 KR domain AMED_0618 PF00550 Phosphopantetheine attachment site AMED_0618 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_0618 PF14765 Polyketide synthase dehydratase AMED_0618 PF08659 KR domain AMED_0618 PF16197 Ketoacyl-synthetase C-terminal extension AMED_0618 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_0618 PF00698 Acyl transferase domain AMED_0619 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_0619 PF14765 Polyketide synthase dehydratase AMED_0619 PF08659 KR domain AMED_0619 PF00550 Phosphopantetheine attachment site AMED_0619 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_0619 PF08659 KR domain AMED_0619 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_0619 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_0619 PF14765 Polyketide synthase dehydratase AMED_0619 PF16197 Ketoacyl-synthetase C-terminal extension AMED_0619 PF08990 Erythronolide synthase docking AMED_0619 PF08240 Alcohol dehydrogenase GroES-like domain AMED_0619 PF00550 Phosphopantetheine attachment site AMED_0619 PF08990 Erythronolide synthase docking AMED_0619 PF00698 Acyl transferase domain AMED_0619 PF08240 Alcohol dehydrogenase GroES-like domain AMED_0619 PF00698 Acyl transferase domain AMED_0619 PF16197 Ketoacyl-synthetase C-terminal extension AMED_0620 PF08990 Erythronolide synthase docking AMED_0620 PF08240 Alcohol dehydrogenase GroES-like domain AMED_0620 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_0620 PF00698 Acyl transferase domain AMED_0620 PF14765 Polyketide synthase dehydratase AMED_0620 PF00550 Phosphopantetheine attachment site AMED_0620 PF08659 KR domain AMED_0620 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_0620 PF08659 KR domain AMED_0620 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_0620 PF16197 Ketoacyl-synthetase C-terminal extension AMED_0620 PF00550 Phosphopantetheine attachment site AMED_0620 PF08990 Erythronolide synthase docking AMED_0620 PF08240 Alcohol dehydrogenase GroES-like domain AMED_0620 PF00698 Acyl transferase domain AMED_0620 PF14765 Polyketide synthase dehydratase AMED_0620 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_0620 PF16197 Ketoacyl-synthetase C-terminal extension AMED_0621 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_0621 PF16197 Ketoacyl-synthetase C-terminal extension AMED_0621 PF14765 Polyketide synthase dehydratase AMED_0621 PF00550 Phosphopantetheine attachment site AMED_0621 PF08659 KR domain AMED_0621 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_0621 PF00698 Acyl transferase domain AMED_0621 PF08240 Alcohol dehydrogenase GroES-like domain AMED_0621 PF08990 Erythronolide synthase docking AMED_0622 PF00797 N-acetyltransferase AMED_0624 PF01761 3-dehydroquinate synthase AMED_0625 PF01474 Class-II DAHP synthetase family AMED_0626 PF08501 Shikimate dehydrogenase substrate binding domain AMED_0626 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AMED_0627 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMED_0628 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMED_0628 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMED_0629 PF13419 Haloacid dehalogenase-like hydrolase AMED_0630 PF00480 ROK family AMED_0631 PF02585 GlcNAc-PI de-N-acetylase AMED_0632 PF07859 alpha/beta hydrolase fold AMED_0633 PF07690 Major Facilitator Superfamily AMED_0636 PF00067 Cytochrome P450 AMED_0637 PF00067 Cytochrome P450 AMED_0638 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMED_0639 PF06722 Protein of unknown function (DUF1205) AMED_0640 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AMED_0641 PF00202 Aminotransferase class-III AMED_0642 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMED_0644 PF00296 Luciferase-like monooxygenase AMED_0645 PF03559 NDP-hexose 2,3-dehydratase AMED_0646 PF01494 FAD binding domain AMED_0648 PF00975 Thioesterase domain AMED_0649 PF00067 Cytochrome P450 AMED_0650 PF08241 Methyltransferase domain AMED_0651 PF00456 Transketolase, thiamine diphosphate binding domain AMED_0652 PF02779 Transketolase, pyrimidine binding domain AMED_0653 PF00067 Cytochrome P450 AMED_0654 PF01220 Dehydroquinase class II AMED_0655 PF00196 Bacterial regulatory proteins, luxR family AMED_0656 PF04561 RNA polymerase Rpb2, domain 2 AMED_0656 PF04565 RNA polymerase Rpb2, domain 3 AMED_0656 PF04563 RNA polymerase beta subunit AMED_0656 PF10385 RNA polymerase beta subunit external 1 domain AMED_0656 PF00562 RNA polymerase Rpb2, domain 6 AMED_0656 PF04560 RNA polymerase Rpb2, domain 7 AMED_0657 PF04997 RNA polymerase Rpb1, domain 1 AMED_0657 PF00623 RNA polymerase Rpb1, domain 2 AMED_0657 PF04983 RNA polymerase Rpb1, domain 3 AMED_0657 PF05000 RNA polymerase Rpb1, domain 4 AMED_0657 PF04998 RNA polymerase Rpb1, domain 5 AMED_0659 PF01427 D-ala-D-ala dipeptidase AMED_0660 PF01037 Lrp/AsnC ligand binding domain AMED_0661 PF07690 Major Facilitator Superfamily AMED_0663 PF00027 Cyclic nucleotide-binding domain AMED_0663 PF13302 Acetyltransferase (GNAT) domain AMED_0672 PF00164 Ribosomal protein S12/S23 AMED_0673 PF00177 Ribosomal protein S7p/S5e AMED_0674 PF03764 Elongation factor G, domain IV AMED_0674 PF00009 Elongation factor Tu GTP binding domain AMED_0674 PF14492 Elongation Factor G, domain II AMED_0674 PF03144 Elongation factor Tu domain 2 AMED_0674 PF00679 Elongation factor G C-terminus AMED_0675 PF03143 Elongation factor Tu C-terminal domain AMED_0675 PF00009 Elongation factor Tu GTP binding domain AMED_0675 PF03144 Elongation factor Tu domain 2 AMED_0676 PF00338 Ribosomal protein S10p/S20e AMED_0677 PF00297 Ribosomal protein L3 AMED_0678 PF00573 Ribosomal protein L4/L1 family AMED_0679 PF00276 Ribosomal protein L23 AMED_0680 PF03947 Ribosomal Proteins L2, C-terminal domain AMED_0680 PF00181 Ribosomal Proteins L2, RNA binding domain AMED_0681 PF00203 Ribosomal protein S19 AMED_0682 PF00237 Ribosomal protein L22p/L17e AMED_0683 PF07650 KH domain AMED_0683 PF00189 Ribosomal protein S3, C-terminal domain AMED_0684 PF00252 Ribosomal protein L16p/L10e AMED_0685 PF00831 Ribosomal L29 protein AMED_0686 PF00366 Ribosomal protein S17 AMED_0687 PF00238 Ribosomal protein L14p/L23e AMED_0688 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AMED_0688 PF00467 KOW motif AMED_0689 PF00281 Ribosomal protein L5 AMED_0689 PF00673 ribosomal L5P family C-terminus AMED_0690 PF00253 Ribosomal protein S14p/S29e AMED_0691 PF00410 Ribosomal protein S8 AMED_0692 PF00347 Ribosomal protein L6 AMED_0693 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AMED_0694 PF00333 Ribosomal protein S5, N-terminal domain AMED_0694 PF03719 Ribosomal protein S5, C-terminal domain AMED_0695 PF00327 Ribosomal protein L30p/L7e AMED_0696 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AMED_0698 PF01810 LysE type translocator AMED_0699 PF00344 SecY translocase AMED_0701 PF00557 Metallopeptidase family M24 AMED_0702 PF01176 Translation initiation factor 1A / IF-1 AMED_0703 PF00444 Ribosomal protein L36 AMED_0704 PF00416 Ribosomal protein S13/S18 AMED_0706 PF00411 Ribosomal protein S11 AMED_0707 PF00163 Ribosomal protein S4/S9 N-terminal domain AMED_0707 PF01479 S4 domain AMED_0708 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AMED_0708 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AMED_0708 PF01000 RNA polymerase Rpb3/RpoA insert domain AMED_0709 PF01196 Ribosomal protein L17 AMED_0710 PF01416 tRNA pseudouridine synthase AMED_0714 PF05108 Type VII secretion system ESX-1, transport TM domain B AMED_0717 PF00082 Subtilase family AMED_0719 PF01580 FtsK/SpoIIIE family AMED_0720 PF00012 Hsp70 protein AMED_0724 PF14230 Domain of unknown function (DUF4333) AMED_0726 PF00572 Ribosomal protein L13 AMED_0727 PF00380 Ribosomal protein S9/S16 AMED_0728 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMED_0728 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMED_0728 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMED_0728 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMED_0730 PF00501 AMP-binding enzyme AMED_0736 PF01380 SIS domain AMED_0737 PF03853 YjeF-related protein N-terminus AMED_0737 PF01256 Carbohydrate kinase AMED_0738 PF08220 DeoR-like helix-turn-helix domain AMED_0738 PF00455 DeoR C terminal sensor domain AMED_0739 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMED_0739 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMED_0740 PF00005 ABC transporter AMED_0740 PF08402 TOBE domain AMED_0741 PF01168 Alanine racemase, N-terminal domain AMED_0741 PF00842 Alanine racemase, C-terminal domain AMED_0742 PF00561 alpha/beta hydrolase fold AMED_0742 PF00364 Biotin-requiring enzyme AMED_0743 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AMED_0745 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AMED_0745 PF17848 Acetyl-coA carboxylase zinc finger domain AMED_0745 PF01039 Carboxyl transferase domain AMED_0746 PF13193 AMP-binding enzyme C-terminal domain AMED_0746 PF00501 AMP-binding enzyme AMED_0747 PF00814 Glycoprotease family AMED_0748 PF00583 Acetyltransferase (GNAT) family AMED_0749 PF00814 Glycoprotease family AMED_0750 PF02350 UDP-N-acetylglucosamine 2-epimerase AMED_0756 PF13847 Methyltransferase domain AMED_0757 PF01022 Bacterial regulatory protein, arsR family AMED_0758 PF01451 Low molecular weight phosphotyrosine protein phosphatase AMED_0759 PF01758 Sodium Bile acid symporter family AMED_0760 PF01022 Bacterial regulatory protein, arsR family AMED_0761 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_0762 PF00166 Chaperonin 10 Kd subunit AMED_0763 PF00118 TCP-1/cpn60 chaperonin family AMED_0764 PF02467 Transcription factor WhiB AMED_0767 PF00196 Bacterial regulatory proteins, luxR family AMED_0767 PF00072 Response regulator receiver domain AMED_0768 PF08281 Sigma-70, region 4 AMED_0768 PF04542 Sigma-70 region 2 AMED_0770 PF17252 Family of unknown function (DUF5319) AMED_0771 PF00571 CBS domain AMED_0771 PF00478 IMP dehydrogenase / GMP reductase domain AMED_0773 PF00478 IMP dehydrogenase / GMP reductase domain AMED_0775 PF05199 GMC oxidoreductase AMED_0777 PF01565 FAD binding domain AMED_0777 PF08031 Berberine and berberine like AMED_0778 PF00171 Aldehyde dehydrogenase family AMED_0779 PF13823 Alcohol dehydrogenase GroES-associated AMED_0779 PF00107 Zinc-binding dehydrogenase AMED_0779 PF08240 Alcohol dehydrogenase GroES-like domain AMED_0782 PF00958 GMP synthase C terminal domain AMED_0782 PF02540 NAD synthase AMED_0782 PF00117 Glutamine amidotransferase class-I AMED_0788 PF00072 Response regulator receiver domain AMED_0788 PF00196 Bacterial regulatory proteins, luxR family AMED_0789 PF00892 EamA-like transporter family AMED_0790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_0790 PF03466 LysR substrate binding domain AMED_0791 PF13191 AAA ATPase domain AMED_0791 PF00069 Protein kinase domain AMED_0792 PF00069 Protein kinase domain AMED_0792 PF03793 PASTA domain AMED_0796 PF01817 Chorismate mutase type II AMED_0798 PF13361 UvrD-like helicase C-terminal domain AMED_0798 PF00580 UvrD/REP helicase N-terminal domain AMED_0799 PF01476 LysM domain AMED_0799 PF01551 Peptidase family M23 AMED_0802 PF08442 ATP-grasp domain AMED_0802 PF00549 CoA-ligase AMED_0803 PF02629 CoA binding domain AMED_0803 PF00549 CoA-ligase AMED_0806 PF00551 Formyl transferase AMED_0807 PF02142 MGS-like domain AMED_0807 PF01808 AICARFT/IMPCHase bienzyme AMED_0815 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AMED_0815 PF14579 Helix-hairpin-helix motif AMED_0815 PF02811 PHP domain AMED_0815 PF01336 OB-fold nucleic acid binding domain AMED_0815 PF07733 Bacterial DNA polymerase III alpha NTPase domain AMED_0819 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AMED_0819 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AMED_0821 PF07690 Major Facilitator Superfamily AMED_0822 PF01022 Bacterial regulatory protein, arsR family AMED_0823 PF07690 Major Facilitator Superfamily AMED_0825 PF12105 SpoU, rRNA methylase, C-terminal AMED_0825 PF00588 SpoU rRNA Methylase family AMED_0830 PF08241 Methyltransferase domain AMED_0833 PF00180 Isocitrate/isopropylmalate dehydrogenase AMED_0837 PF12706 Beta-lactamase superfamily domain AMED_0840 PF00579 tRNA synthetases class I (W and Y) AMED_0842 PF03631 Virulence factor BrkB AMED_0844 PF01638 HxlR-like helix-turn-helix AMED_0847 PF00082 Subtilase family AMED_0849 PF13085 2Fe-2S iron-sulfur cluster binding domain AMED_0850 PF02910 Fumarate reductase flavoprotein C-term AMED_0850 PF00890 FAD binding domain AMED_0852 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AMED_0853 PF16499 Alpha galactosidase A AMED_0853 PF17801 Alpha galactosidase C-terminal beta sandwich domain AMED_0854 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation AMED_0854 PF14508 Glycosyl-hydrolase 97 N-terminal AMED_0854 PF10566 Glycoside hydrolase 97 AMED_0859 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMED_0860 PF00591 Glycosyl transferase family, a/b domain AMED_0860 PF02885 Glycosyl transferase family, helical bundle domain AMED_0860 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AMED_0862 PF00962 Adenosine/AMP deaminase AMED_0863 PF07690 Major Facilitator Superfamily AMED_0865 PF00270 DEAD/DEAH box helicase AMED_0865 PF08148 DSHCT (NUC185) domain AMED_0865 PF00271 Helicase conserved C-terminal domain AMED_0868 PF01638 HxlR-like helix-turn-helix AMED_0870 PF00107 Zinc-binding dehydrogenase AMED_0870 PF08240 Alcohol dehydrogenase GroES-like domain AMED_0872 PF00528 Binding-protein-dependent transport system inner membrane component AMED_0873 PF00528 Binding-protein-dependent transport system inner membrane component AMED_0874 PF00975 Thioesterase domain AMED_0875 PF00067 Cytochrome P450 AMED_0876 PF00067 Cytochrome P450 AMED_0880 PF00171 Aldehyde dehydrogenase family AMED_0881 PF00171 Aldehyde dehydrogenase family AMED_0882 PF01791 DeoC/LacD family aldolase AMED_0887 PF04542 Sigma-70 region 2 AMED_0887 PF04545 Sigma-70, region 4 AMED_0890 PF00376 MerR family regulatory protein AMED_0890 PF09278 MerR, DNA binding AMED_0891 PF00248 Aldo/keto reductase family AMED_0893 PF01070 FMN-dependent dehydrogenase AMED_0895 PF00999 Sodium/hydrogen exchanger family AMED_0896 PF00486 Transcriptional regulatory protein, C terminal AMED_0896 PF00072 Response regulator receiver domain AMED_0897 PF00672 HAMP domain AMED_0897 PF00512 His Kinase A (phospho-acceptor) domain AMED_0897 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_0899 PF03129 Anticodon binding domain AMED_0899 PF13393 Histidyl-tRNA synthetase AMED_0901 PF01979 Amidohydrolase family AMED_0906 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMED_0906 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMED_0906 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMED_0906 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMED_0908 PF01048 Phosphorylase superfamily AMED_0912 PF00069 Protein kinase domain AMED_0913 PF01642 Methylmalonyl-CoA mutase AMED_0914 PF01642 Methylmalonyl-CoA mutase AMED_0914 PF02310 B12 binding domain AMED_0917 PF04107 Glutamate-cysteine ligase family 2(GCS2) AMED_0917 PF01546 Peptidase family M20/M25/M40 AMED_0920 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_0920 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMED_0924 PF18029 Glyoxalase-like domain AMED_0924 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_0925 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMED_0925 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMED_0926 PF00230 Major intrinsic protein AMED_0927 PF01266 FAD dependent oxidoreductase AMED_0927 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AMED_0934 PF02785 Biotin carboxylase C-terminal domain AMED_0934 PF00289 Biotin carboxylase, N-terminal domain AMED_0934 PF00364 Biotin-requiring enzyme AMED_0934 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMED_0937 PF00375 Sodium:dicarboxylate symporter family AMED_0938 PF02545 Maf-like protein AMED_0939 PF14310 Fibronectin type III-like domain AMED_0939 PF00933 Glycosyl hydrolase family 3 N terminal domain AMED_0939 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMED_0940 PF07690 Major Facilitator Superfamily AMED_0943 PF00296 Luciferase-like monooxygenase AMED_0944 PF01047 MarR family AMED_0946 PF01039 Carboxyl transferase domain AMED_0948 PF00196 Bacterial regulatory proteins, luxR family AMED_0948 PF00072 Response regulator receiver domain AMED_0949 PF07730 Histidine kinase AMED_0953 PF00440 Bacterial regulatory proteins, tetR family AMED_0954 PF01494 FAD binding domain AMED_0955 PF01638 HxlR-like helix-turn-helix AMED_0958 PF01965 DJ-1/PfpI family AMED_0958 PF12833 Helix-turn-helix domain AMED_0960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_0960 PF03466 LysR substrate binding domain AMED_0963 PF01209 ubiE/COQ5 methyltransferase family AMED_0965 PF08281 Sigma-70, region 4 AMED_0965 PF04542 Sigma-70 region 2 AMED_0966 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMED_0966 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_0970 PF07730 Histidine kinase AMED_0971 PF00196 Bacterial regulatory proteins, luxR family AMED_0971 PF00072 Response regulator receiver domain AMED_0972 PF08239 Bacterial SH3 domain AMED_0972 PF01476 LysM domain AMED_0972 PF00877 NlpC/P60 family AMED_0973 PF03099 Biotin/lipoate A/B protein ligase family AMED_0973 PF02237 Biotin protein ligase C terminal domain AMED_0975 PF00682 HMGL-like AMED_0978 PF17678 Glycosyl hydrolase family 92 N-terminal domain AMED_0978 PF07971 Glycosyl hydrolase family 92 AMED_0979 PF00459 Inositol monophosphatase family AMED_0980 PF00072 Response regulator receiver domain AMED_0980 PF00486 Transcriptional regulatory protein, C terminal AMED_0981 PF00672 HAMP domain AMED_0981 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_0981 PF00512 His Kinase A (phospho-acceptor) domain AMED_0982 PF00196 Bacterial regulatory proteins, luxR family AMED_0982 PF00072 Response regulator receiver domain AMED_0983 PF00196 Bacterial regulatory proteins, luxR family AMED_0983 PF00072 Response regulator receiver domain AMED_0985 PF07690 Major Facilitator Superfamily AMED_0990 PF09594 Glycosyltransferase family 87 AMED_0991 PF09594 Glycosyltransferase family 87 AMED_0992 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AMED_0992 PF02222 ATP-grasp domain AMED_0993 PF00731 AIR carboxylase AMED_0996 PF13193 AMP-binding enzyme C-terminal domain AMED_0996 PF00501 AMP-binding enzyme AMED_0997 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_0997 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_0997 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_0999 PF00561 alpha/beta hydrolase fold AMED_1005 PF13399 LytR cell envelope-related transcriptional attenuator AMED_1005 PF03816 Cell envelope-related transcriptional attenuator domain AMED_1006 PF03816 Cell envelope-related transcriptional attenuator domain AMED_1006 PF13399 LytR cell envelope-related transcriptional attenuator AMED_1007 PF16363 GDP-mannose 4,6 dehydratase AMED_1008 PF04321 RmlD substrate binding domain AMED_1009 PF00534 Glycosyl transferases group 1 AMED_1009 PF13439 Glycosyltransferase Family 4 AMED_1012 PF13439 Glycosyltransferase Family 4 AMED_1012 PF00534 Glycosyl transferases group 1 AMED_1016 PF00483 Nucleotidyl transferase AMED_1019 PF00392 Bacterial regulatory proteins, gntR family AMED_1022 PF01996 F420-0:Gamma-glutamyl ligase AMED_1022 PF00881 Nitroreductase family AMED_1026 PF00037 4Fe-4S binding domain AMED_1027 PF00155 Aminotransferase class I and II AMED_1029 PF01494 FAD binding domain AMED_1031 PF14602 Hexapeptide repeat of succinyl-transferase AMED_1031 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle AMED_1033 PF07687 Peptidase dimerisation domain AMED_1033 PF01546 Peptidase family M20/M25/M40 AMED_1036 PF01483 Proprotein convertase P-domain AMED_1036 PF04389 Peptidase family M28 AMED_1037 PF04389 Peptidase family M28 AMED_1037 PF02868 Thermolysin metallopeptidase, alpha-helical domain AMED_1037 PF01447 Thermolysin metallopeptidase, catalytic domain AMED_1039 PF02868 Thermolysin metallopeptidase, alpha-helical domain AMED_1039 PF01447 Thermolysin metallopeptidase, catalytic domain AMED_1039 PF04389 Peptidase family M28 AMED_1041 PF03641 Possible lysine decarboxylase AMED_1042 PF03641 Possible lysine decarboxylase AMED_1047 PF01757 Acyltransferase family AMED_1050 PF00535 Glycosyl transferase family 2 AMED_1051 PF00005 ABC transporter AMED_1051 PF00664 ABC transporter transmembrane region AMED_1052 PF00005 ABC transporter AMED_1052 PF00664 ABC transporter transmembrane region AMED_1053 PF02322 Cytochrome bd terminal oxidase subunit II AMED_1054 PF01654 Cytochrome bd terminal oxidase subunit I AMED_1059 PF03352 Methyladenine glycosylase AMED_1060 PF00378 Enoyl-CoA hydratase/isomerase AMED_1062 PF00883 Cytosol aminopeptidase family, catalytic domain AMED_1062 PF02789 Cytosol aminopeptidase family, N-terminal domain AMED_1063 PF03466 LysR substrate binding domain AMED_1063 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_1064 PF07690 Major Facilitator Superfamily AMED_1066 PF01596 O-methyltransferase AMED_1067 PF04542 Sigma-70 region 2 AMED_1067 PF08281 Sigma-70, region 4 AMED_1069 PF13180 PDZ domain AMED_1069 PF00595 PDZ domain AMED_1070 PF02416 mttA/Hcf106 family AMED_1071 PF01883 Iron-sulfur cluster assembly protein AMED_1071 PF10609 NUBPL iron-transfer P-loop NTPase AMED_1073 PF01769 Divalent cation transporter AMED_1073 PF03448 MgtE intracellular N domain AMED_1073 PF00571 CBS domain AMED_1074 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase AMED_1075 PF01145 SPFH domain / Band 7 family AMED_1078 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_1078 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_1078 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_1080 PF01547 Bacterial extracellular solute-binding protein AMED_1081 PF00528 Binding-protein-dependent transport system inner membrane component AMED_1082 PF00528 Binding-protein-dependent transport system inner membrane component AMED_1083 PF00005 ABC transporter AMED_1083 PF17912 MalK OB fold domain AMED_1086 PF17925 Tetracyclin repressor-like, C-terminal domain AMED_1086 PF00440 Bacterial regulatory proteins, tetR family AMED_1087 PF07690 Major Facilitator Superfamily AMED_1088 PF00196 Bacterial regulatory proteins, luxR family AMED_1088 PF00072 Response regulator receiver domain AMED_1089 PF07730 Histidine kinase AMED_1091 PF04542 Sigma-70 region 2 AMED_1091 PF04545 Sigma-70, region 4 AMED_1096 PF01544 CorA-like Mg2+ transporter protein AMED_1099 PF00293 NUDIX domain AMED_1099 PF13344 Haloacid dehalogenase-like hydrolase AMED_1102 PF02811 PHP domain AMED_1103 PF01914 MarC family integral membrane protein AMED_1108 PF00270 DEAD/DEAH box helicase AMED_1108 PF00271 Helicase conserved C-terminal domain AMED_1113 PF00440 Bacterial regulatory proteins, tetR family AMED_1115 PF12697 Alpha/beta hydrolase family AMED_1116 PF00440 Bacterial regulatory proteins, tetR family AMED_1116 PF08362 YcdC-like protein, C-terminal region AMED_1117 PF12697 Alpha/beta hydrolase family AMED_1119 PF00581 Rhodanese-like domain AMED_1119 PF00899 ThiF family AMED_1121 PF00384 Molybdopterin oxidoreductase AMED_1121 PF01568 Molydopterin dinucleotide binding domain AMED_1121 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMED_1122 PF04324 BFD-like [2Fe-2S] binding domain AMED_1122 PF18267 Rubredoxin NAD+ reductase C-terminal domain AMED_1122 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMED_1122 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_1122 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMED_1123 PF07690 Major Facilitator Superfamily AMED_1124 PF13806 Rieske-like [2Fe-2S] domain AMED_1124 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_1124 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMED_1124 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMED_1124 PF04324 BFD-like [2Fe-2S] binding domain AMED_1124 PF18267 Rubredoxin NAD+ reductase C-terminal domain AMED_1125 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMED_1125 PF13806 Rieske-like [2Fe-2S] domain AMED_1125 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_1125 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMED_1125 PF04324 BFD-like [2Fe-2S] binding domain AMED_1125 PF18267 Rubredoxin NAD+ reductase C-terminal domain AMED_1130 PF13280 WYL domain AMED_1130 PF08279 HTH domain AMED_1133 PF13361 UvrD-like helicase C-terminal domain AMED_1133 PF00580 UvrD/REP helicase N-terminal domain AMED_1134 PF00580 UvrD/REP helicase N-terminal domain AMED_1134 PF13361 UvrD-like helicase C-terminal domain AMED_1138 PF04228 Putative neutral zinc metallopeptidase AMED_1141 PF14258 Domain of unknown function (DUF4350) AMED_1142 PF07726 ATPase family associated with various cellular activities (AAA) AMED_1142 PF17863 AAA lid domain AMED_1147 PF04228 Putative neutral zinc metallopeptidase AMED_1151 PF00675 Insulinase (Peptidase family M16) AMED_1151 PF05193 Peptidase M16 inactive domain AMED_1152 PF09297 NADH pyrophosphatase zinc ribbon domain AMED_1152 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain AMED_1152 PF00293 NUDIX domain AMED_1153 PF00480 ROK family AMED_1153 PF01047 MarR family AMED_1155 PF00528 Binding-protein-dependent transport system inner membrane component AMED_1156 PF00528 Binding-protein-dependent transport system inner membrane component AMED_1157 PF11975 Family 4 glycosyl hydrolase C-terminal domain AMED_1157 PF02056 Family 4 glycosyl hydrolase AMED_1160 PF01022 Bacterial regulatory protein, arsR family AMED_1162 PF02447 GntP family permease AMED_1165 PF03186 CobD/Cbib protein AMED_1168 PF02104 SURF1 family AMED_1169 PF01451 Low molecular weight phosphotyrosine protein phosphatase AMED_1171 PF01817 Chorismate mutase type II AMED_1172 PF01784 NIF3 (NGG1p interacting factor 3) AMED_1173 PF02591 C4-type zinc ribbon domain AMED_1174 PF00300 Histidine phosphatase superfamily (branch 1) AMED_1174 PF13456 Reverse transcriptase-like AMED_1177 PF00196 Bacterial regulatory proteins, luxR family AMED_1177 PF00072 Response regulator receiver domain AMED_1179 PF04545 Sigma-70, region 4 AMED_1179 PF04542 Sigma-70 region 2 AMED_1182 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_1182 PF14759 Reductase C-terminal AMED_1189 PF00877 NlpC/P60 family AMED_1193 PF17876 Cold shock domain AMED_1193 PF08461 Ribonuclease R winged-helix domain AMED_1193 PF08206 Ribonuclease B OB domain AMED_1193 PF00773 RNB domain AMED_1194 PF01497 Periplasmic binding protein AMED_1195 PF00171 Aldehyde dehydrogenase family AMED_1196 PF00202 Aminotransferase class-III AMED_1200 PF07729 FCD domain AMED_1200 PF00392 Bacterial regulatory proteins, gntR family AMED_1201 PF00171 Aldehyde dehydrogenase family AMED_1202 PF00005 ABC transporter AMED_1202 PF08402 TOBE domain AMED_1203 PF13416 Bacterial extracellular solute-binding protein AMED_1204 PF00528 Binding-protein-dependent transport system inner membrane component AMED_1205 PF00528 Binding-protein-dependent transport system inner membrane component AMED_1206 PF00561 alpha/beta hydrolase fold AMED_1207 PF02673 Bacitracin resistance protein BacA AMED_1209 PF02548 Ketopantoate hydroxymethyltransferase AMED_1210 PF01336 OB-fold nucleic acid binding domain AMED_1210 PF16995 Transmembrane region of lysyl-tRNA synthetase AMED_1210 PF00152 tRNA synthetases class II (D, K and N) AMED_1210 PF09924 Uncharacterised conserved protein (DUF2156) AMED_1212 PF04978 Protein of unknown function (DUF664) AMED_1215 PF02540 NAD synthase AMED_1215 PF00795 Carbon-nitrogen hydrolase AMED_1216 PF07517 SecA DEAD-like domain AMED_1216 PF07516 SecA Wing and Scaffold domain AMED_1216 PF01043 SecA preprotein cross-linking domain AMED_1217 PF00561 alpha/beta hydrolase fold AMED_1220 PF03951 Glutamine synthetase, beta-Grasp domain AMED_1220 PF00120 Glutamine synthetase, catalytic domain AMED_1221 PF01425 Amidase AMED_1222 PF01037 Lrp/AsnC ligand binding domain AMED_1224 PF00958 GMP synthase C terminal domain AMED_1224 PF02540 NAD synthase AMED_1224 PF00117 Glutamine amidotransferase class-I AMED_1225 PF01384 Phosphate transporter family AMED_1226 PF01384 Phosphate transporter family AMED_1227 PF03710 Glutamate-ammonia ligase adenylyltransferase AMED_1227 PF08335 GlnD PII-uridylyltransferase AMED_1229 PF00120 Glutamine synthetase, catalytic domain AMED_1229 PF03951 Glutamine synthetase, beta-Grasp domain AMED_1232 PF13829 Domain of unknown function (DUF4191) AMED_1233 PF00570 HRDC domain AMED_1233 PF00580 UvrD/REP helicase N-terminal domain AMED_1233 PF13361 UvrD-like helicase C-terminal domain AMED_1235 PF02467 Transcription factor WhiB AMED_1240 PF03109 ABC1 family AMED_1244 PF13180 PDZ domain AMED_1244 PF05362 Lon protease (S16) C-terminal proteolytic domain AMED_1246 PF03699 Uncharacterised protein family (UPF0182) AMED_1247 PF01494 FAD binding domain AMED_1248 PF02909 Tetracyclin repressor-like, C-terminal domain AMED_1248 PF00440 Bacterial regulatory proteins, tetR family AMED_1250 PF00472 RF-1 domain AMED_1250 PF03462 PCRF domain AMED_1251 PF00005 ABC transporter AMED_1252 PF02687 FtsX-like permease family AMED_1252 PF18075 FtsX extracellular domain AMED_1253 PF01668 SmpB protein AMED_1258 PF00196 Bacterial regulatory proteins, luxR family AMED_1258 PF00072 Response regulator receiver domain AMED_1259 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_1259 PF07730 Histidine kinase AMED_1262 PF17151 Periplasmic sensor domain AMED_1262 PF00990 Diguanylate cyclase, GGDEF domain AMED_1265 PF00221 Aromatic amino acid lyase AMED_1266 PF01175 Urocanase Rossmann-like domain AMED_1266 PF17392 Urocanase C-terminal domain AMED_1266 PF17391 Urocanase N-terminal domain AMED_1267 PF07687 Peptidase dimerisation domain AMED_1267 PF01546 Peptidase family M20/M25/M40 AMED_1268 PF01979 Amidohydrolase family AMED_1269 PF01979 Amidohydrolase family AMED_1270 PF01494 FAD binding domain AMED_1273 PF01384 Phosphate transporter family AMED_1277 PF07730 Histidine kinase AMED_1278 PF00072 Response regulator receiver domain AMED_1278 PF00196 Bacterial regulatory proteins, luxR family AMED_1279 PF01494 FAD binding domain AMED_1283 PF00005 ABC transporter AMED_1284 PF00270 DEAD/DEAH box helicase AMED_1284 PF00271 Helicase conserved C-terminal domain AMED_1284 PF08482 ATP-dependent helicase C-terminal AMED_1284 PF04408 Helicase associated domain (HA2) AMED_1285 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMED_1287 PF00069 Protein kinase domain AMED_1287 PF13462 Thioredoxin AMED_1289 PF00877 NlpC/P60 family AMED_1292 PF01494 FAD binding domain AMED_1294 PF04978 Protein of unknown function (DUF664) AMED_1295 PF00933 Glycosyl hydrolase family 3 N terminal domain AMED_1295 PF14310 Fibronectin type III-like domain AMED_1295 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMED_1297 PF03989 DNA gyrase C-terminal domain, beta-propeller AMED_1297 PF00521 DNA gyrase/topoisomerase IV, subunit A AMED_1298 PF00204 DNA gyrase B AMED_1298 PF00986 DNA gyrase B subunit, carboxyl terminus AMED_1298 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_1298 PF01751 Toprim domain AMED_1301 PF03358 NADPH-dependent FMN reductase AMED_1307 PF02653 Branched-chain amino acid transport system / permease component AMED_1308 PF02653 Branched-chain amino acid transport system / permease component AMED_1309 PF00005 ABC transporter AMED_1310 PF13407 Periplasmic binding protein domain AMED_1311 PF00356 Bacterial regulatory proteins, lacI family AMED_1312 PF02463 RecF/RecN/SMC N terminal domain AMED_1313 PF01638 HxlR-like helix-turn-helix AMED_1315 PF13305 Tetracyclin repressor-like, C-terminal domain AMED_1315 PF00440 Bacterial regulatory proteins, tetR family AMED_1318 PF00005 ABC transporter AMED_1318 PF17755 UvrA DNA-binding domain AMED_1318 PF17760 UvrA interaction domain AMED_1324 PF12706 Beta-lactamase superfamily domain AMED_1327 PF02983 Alpha-lytic protease prodomain AMED_1327 PF00089 Trypsin AMED_1328 PF03848 Tellurite resistance protein TehB AMED_1331 PF00067 Cytochrome P450 AMED_1332 PF00152 tRNA synthetases class II (D, K and N) AMED_1332 PF01336 OB-fold nucleic acid binding domain AMED_1336 PF00561 alpha/beta hydrolase fold AMED_1337 PF07995 Glucose / Sorbosone dehydrogenase AMED_1339 PF01906 Putative heavy-metal-binding AMED_1340 PF01906 Putative heavy-metal-binding AMED_1341 PF00294 pfkB family carbohydrate kinase AMED_1342 PF02056 Family 4 glycosyl hydrolase AMED_1342 PF11975 Family 4 glycosyl hydrolase C-terminal domain AMED_1344 PF00890 FAD binding domain AMED_1345 PF00296 Luciferase-like monooxygenase AMED_1346 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AMED_1346 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMED_1348 PF06441 Epoxide hydrolase N terminus AMED_1354 PF00809 Pterin binding enzyme AMED_1356 PF00005 ABC transporter AMED_1364 PF00652 Ricin-type beta-trefoil lectin domain AMED_1364 PF16483 Beta-1,3-glucanase AMED_1365 PF00892 EamA-like transporter family AMED_1366 PF01047 MarR family AMED_1368 PF03830 PTS system sorbose subfamily IIB component AMED_1369 PF03613 PTS system mannose/fructose/sorbose family IID component AMED_1370 PF03610 PTS system fructose IIA component AMED_1373 PF03704 Bacterial transcriptional activator domain AMED_1373 PF00486 Transcriptional regulatory protein, C terminal AMED_1373 PF00931 NB-ARC domain AMED_1375 PF07690 Major Facilitator Superfamily AMED_1376 PF09084 NMT1/THI5 like AMED_1377 PF00005 ABC transporter AMED_1377 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMED_1378 PF00005 ABC transporter AMED_1382 PF00440 Bacterial regulatory proteins, tetR family AMED_1386 PF00196 Bacterial regulatory proteins, luxR family AMED_1386 PF00072 Response regulator receiver domain AMED_1388 PF00005 ABC transporter AMED_1391 PF00457 Glycosyl hydrolases family 11 AMED_1392 PF01522 Polysaccharide deacetylase AMED_1392 PF00457 Glycosyl hydrolases family 11 AMED_1393 PF00005 ABC transporter AMED_1400 PF07690 Major Facilitator Superfamily AMED_1401 PF00171 Aldehyde dehydrogenase family AMED_1403 PF00723 Glycosyl hydrolases family 15 AMED_1404 PF08240 Alcohol dehydrogenase GroES-like domain AMED_1404 PF00107 Zinc-binding dehydrogenase AMED_1408 PF00296 Luciferase-like monooxygenase AMED_1411 PF03734 L,D-transpeptidase catalytic domain AMED_1411 PF17964 Bacterial Ig domain AMED_1412 PF07690 Major Facilitator Superfamily AMED_1413 PF11838 ERAP1-like C-terminal domain AMED_1413 PF01433 Peptidase family M1 domain AMED_1418 PF03527 RHS protein AMED_1418 PF05593 RHS Repeat AMED_1425 PF00698 Acyl transferase domain AMED_1425 PF16197 Ketoacyl-synthetase C-terminal extension AMED_1425 PF08240 Alcohol dehydrogenase GroES-like domain AMED_1425 PF00107 Zinc-binding dehydrogenase AMED_1425 PF14765 Polyketide synthase dehydratase AMED_1425 PF00550 Phosphopantetheine attachment site AMED_1425 PF08659 KR domain AMED_1425 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_1425 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_1431 PF03259 Roadblock/LC7 domain AMED_1434 PF00067 Cytochrome P450 AMED_1437 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_1437 PF03466 LysR substrate binding domain AMED_1440 PF01494 FAD binding domain AMED_1441 PF16859 Tetracyclin repressor-like, C-terminal domain AMED_1441 PF00440 Bacterial regulatory proteins, tetR family AMED_1447 PF00248 Aldo/keto reductase family AMED_1449 PF04542 Sigma-70 region 2 AMED_1449 PF08281 Sigma-70, region 4 AMED_1454 PF00486 Transcriptional regulatory protein, C terminal AMED_1454 PF00931 NB-ARC domain AMED_1454 PF03704 Bacterial transcriptional activator domain AMED_1456 PF03055 Retinal pigment epithelial membrane protein AMED_1462 PF00682 HMGL-like AMED_1463 PF00501 AMP-binding enzyme AMED_1463 PF13193 AMP-binding enzyme C-terminal domain AMED_1464 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AMED_1464 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMED_1466 PF00072 Response regulator receiver domain AMED_1466 PF00196 Bacterial regulatory proteins, luxR family AMED_1471 PF00753 Metallo-beta-lactamase superfamily AMED_1471 PF12706 Beta-lactamase superfamily domain AMED_1472 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_1473 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_1473 PF00512 His Kinase A (phospho-acceptor) domain AMED_1473 PF00989 PAS fold AMED_1474 PF00135 Carboxylesterase family AMED_1481 PF02423 Ornithine cyclodeaminase/mu-crystallin family AMED_1484 PF00174 Oxidoreductase molybdopterin binding domain AMED_1485 PF00111 2Fe-2S iron-sulfur cluster binding domain AMED_1485 PF00175 Oxidoreductase NAD-binding domain AMED_1485 PF00970 Oxidoreductase FAD-binding domain AMED_1490 PF00350 Dynamin family AMED_1491 PF00350 Dynamin family AMED_1493 PF01638 HxlR-like helix-turn-helix AMED_1494 PF13193 AMP-binding enzyme C-terminal domain AMED_1494 PF00501 AMP-binding enzyme AMED_1497 PF01243 Pyridoxamine 5'-phosphate oxidase AMED_1498 PF01270 Glycosyl hydrolases family 8 AMED_1499 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMED_1499 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMED_1500 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMED_1501 PF00528 Binding-protein-dependent transport system inner membrane component AMED_1502 PF00005 ABC transporter AMED_1503 PF13309 HTH domain AMED_1503 PF08348 YheO-like PAS domain AMED_1505 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase AMED_1506 PF00561 alpha/beta hydrolase fold AMED_1507 PF00005 ABC transporter AMED_1511 PF11799 impB/mucB/samB family C-terminal domain AMED_1511 PF00817 impB/mucB/samB family AMED_1511 PF11798 IMS family HHH motif AMED_1513 PF00392 Bacterial regulatory proteins, gntR family AMED_1513 PF07729 FCD domain AMED_1514 PF02653 Branched-chain amino acid transport system / permease component AMED_1515 PF00005 ABC transporter AMED_1516 PF13407 Periplasmic binding protein domain AMED_1523 PF13407 Periplasmic binding protein domain AMED_1525 PF07470 Glycosyl Hydrolase Family 88 AMED_1527 PF00931 NB-ARC domain AMED_1527 PF03704 Bacterial transcriptional activator domain AMED_1527 PF00486 Transcriptional regulatory protein, C terminal AMED_1529 PF09423 PhoD-like phosphatase AMED_1529 PF16655 PhoD-like phosphatase, N-terminal domain AMED_1530 PF13229 Right handed beta helix region AMED_1530 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) AMED_1530 PF12708 Pectate lyase superfamily protein AMED_1531 PF07470 Glycosyl Hydrolase Family 88 AMED_1533 PF01204 Trehalase AMED_1534 PF00480 ROK family AMED_1536 PF07730 Histidine kinase AMED_1536 PF17200 Single Cache domain 2 AMED_1538 PF00106 short chain dehydrogenase AMED_1539 PF02547 Queuosine biosynthesis protein AMED_1542 PF00005 ABC transporter AMED_1543 PF00528 Binding-protein-dependent transport system inner membrane component AMED_1546 PF00270 DEAD/DEAH box helicase AMED_1546 PF00271 Helicase conserved C-terminal domain AMED_1551 PF16921 Tex protein YqgF-like domain AMED_1551 PF09371 Tex-like protein N-terminal domain AMED_1551 PF00575 S1 RNA binding domain AMED_1551 PF17674 HHH domain AMED_1552 PF00704 Glycosyl hydrolases family 18 AMED_1552 PF00041 Fibronectin type III domain AMED_1552 PF02018 Carbohydrate binding domain AMED_1553 PF05199 GMC oxidoreductase AMED_1554 PF00743 Flavin-binding monooxygenase-like AMED_1556 PF12833 Helix-turn-helix domain AMED_1556 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AMED_1560 PF00440 Bacterial regulatory proteins, tetR family AMED_1560 PF18665 Tetracyclin repressor-like, C-terminal domain AMED_1563 PF01575 MaoC like domain AMED_1563 PF00171 Aldehyde dehydrogenase family AMED_1564 PF05138 Phenylacetic acid catabolic protein AMED_1565 PF06243 Phenylacetic acid degradation B AMED_1566 PF05138 Phenylacetic acid catabolic protein AMED_1567 PF01883 Iron-sulfur cluster assembly protein AMED_1568 PF00175 Oxidoreductase NAD-binding domain AMED_1568 PF00111 2Fe-2S iron-sulfur cluster binding domain AMED_1568 PF00970 Oxidoreductase FAD-binding domain AMED_1571 PF16701 Adenylate cyclase regulatory domain AMED_1571 PF00211 Adenylate and Guanylate cyclase catalytic domain AMED_1572 PF00582 Universal stress protein family AMED_1578 PF02803 Thiolase, C-terminal domain AMED_1578 PF00108 Thiolase, N-terminal domain AMED_1580 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMED_1581 PF00392 Bacterial regulatory proteins, gntR family AMED_1581 PF00155 Aminotransferase class I and II AMED_1582 PF02627 Carboxymuconolactone decarboxylase family AMED_1584 PF00474 Sodium:solute symporter family AMED_1586 PF00474 Sodium:solute symporter family AMED_1588 PF04397 LytTr DNA-binding domain AMED_1588 PF00072 Response regulator receiver domain AMED_1589 PF07694 5TMR of 5TMR-LYT AMED_1589 PF06580 Histidine kinase AMED_1591 PF13407 Periplasmic binding protein domain AMED_1592 PF02653 Branched-chain amino acid transport system / permease component AMED_1593 PF00005 ABC transporter AMED_1595 PF00356 Bacterial regulatory proteins, lacI family AMED_1596 PF07971 Glycosyl hydrolase family 92 AMED_1596 PF17678 Glycosyl hydrolase family 92 N-terminal domain AMED_1597 PF07971 Glycosyl hydrolase family 92 AMED_1597 PF17678 Glycosyl hydrolase family 92 N-terminal domain AMED_1599 PF01047 MarR family AMED_1600 PF01910 Thiamine-binding protein AMED_1602 PF00085 Thioredoxin AMED_1604 PF00343 Carbohydrate phosphorylase AMED_1604 PF11897 Protein of unknown function (DUF3417) AMED_1609 PF00296 Luciferase-like monooxygenase AMED_1613 PF00005 ABC transporter AMED_1614 PF00378 Enoyl-CoA hydratase/isomerase AMED_1615 PF01209 ubiE/COQ5 methyltransferase family AMED_1616 PF18096 THUMP domain-like AMED_1618 PF03466 LysR substrate binding domain AMED_1618 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_1619 PF02839 Carbohydrate binding domain AMED_1621 PF00155 Aminotransferase class I and II AMED_1621 PF00392 Bacterial regulatory proteins, gntR family AMED_1623 PF01494 FAD binding domain AMED_1628 PF00248 Aldo/keto reductase family AMED_1629 PF01494 FAD binding domain AMED_1630 PF00877 NlpC/P60 family AMED_1631 PF01156 Inosine-uridine preferring nucleoside hydrolase AMED_1632 PF00132 Bacterial transferase hexapeptide (six repeats) AMED_1634 PF00585 C-terminal regulatory domain of Threonine dehydratase AMED_1634 PF00291 Pyridoxal-phosphate dependent enzyme AMED_1637 PF09856 Predicted transcriptional regulator (DUF2083) AMED_1637 PF01381 Helix-turn-helix AMED_1637 PF06114 IrrE N-terminal-like domain AMED_1638 PF00463 Isocitrate lyase family AMED_1646 PF00534 Glycosyl transferases group 1 AMED_1646 PF13439 Glycosyltransferase Family 4 AMED_1647 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMED_1647 PF00703 Glycosyl hydrolases family 2 AMED_1647 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMED_1648 PF00255 Glutathione peroxidase AMED_1649 PF03065 Glycosyl hydrolase family 57 AMED_1649 PF09210 Domain of unknown function (DUF1957) AMED_1650 PF08241 Methyltransferase domain AMED_1652 PF02645 Uncharacterised protein, DegV family COG1307 AMED_1653 PF01012 Electron transfer flavoprotein domain AMED_1654 PF01012 Electron transfer flavoprotein domain AMED_1654 PF00766 Electron transfer flavoprotein FAD-binding domain AMED_1658 PF00196 Bacterial regulatory proteins, luxR family AMED_1658 PF00072 Response regulator receiver domain AMED_1659 PF07690 Major Facilitator Superfamily AMED_1660 PF00266 Aminotransferase class-V AMED_1665 PF00753 Metallo-beta-lactamase superfamily AMED_1669 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AMED_1669 PF03120 NAD-dependent DNA ligase OB-fold domain AMED_1669 PF00533 BRCA1 C Terminus (BRCT) domain AMED_1669 PF01653 NAD-dependent DNA ligase adenylation domain AMED_1669 PF12826 Helix-hairpin-helix motif AMED_1672 PF02686 Glu-tRNAGln amidotransferase C subunit AMED_1673 PF01425 Amidase AMED_1674 PF02934 GatB/GatE catalytic domain AMED_1674 PF02637 GatB domain AMED_1679 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMED_1679 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMED_1681 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMED_1681 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMED_1683 PF00920 Dehydratase family AMED_1685 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMED_1685 PF00205 Thiamine pyrophosphate enzyme, central domain AMED_1685 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMED_1686 PF10369 Small subunit of acetolactate synthase AMED_1687 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AMED_1687 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AMED_1693 PF00440 Bacterial regulatory proteins, tetR family AMED_1694 PF01842 ACT domain AMED_1694 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMED_1694 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMED_1695 PF00082 Subtilase family AMED_1695 PF02225 PA domain AMED_1695 PF05922 Peptidase inhibitor I9 AMED_1695 PF13860 FlgD Ig-like domain AMED_1696 PF00180 Isocitrate/isopropylmalate dehydrogenase AMED_1697 PF08502 LeuA allosteric (dimerisation) domain AMED_1697 PF00682 HMGL-like AMED_1698 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMED_1699 PF01494 FAD binding domain AMED_1701 PF00216 Bacterial DNA-binding protein AMED_1702 PF00931 NB-ARC domain AMED_1702 PF00486 Transcriptional regulatory protein, C terminal AMED_1702 PF03704 Bacterial transcriptional activator domain AMED_1710 PF11774 Lsr2 AMED_1712 PF00216 Bacterial DNA-binding protein AMED_1714 PF12320 Type 5 capsule protein repressor C-terminal domain AMED_1714 PF00149 Calcineurin-like phosphoesterase AMED_1715 PF13476 AAA domain AMED_1716 PF13476 AAA domain AMED_1722 PF09339 IclR helix-turn-helix domain AMED_1722 PF01614 Bacterial transcriptional regulator AMED_1723 PF00330 Aconitase family (aconitate hydratase) AMED_1724 PF00694 Aconitase C-terminal domain AMED_1725 PF00216 Bacterial DNA-binding protein AMED_1726 PF00931 NB-ARC domain AMED_1726 PF00486 Transcriptional regulatory protein, C terminal AMED_1726 PF03704 Bacterial transcriptional activator domain AMED_1727 PF00300 Histidine phosphatase superfamily (branch 1) AMED_1727 PF00293 NUDIX domain AMED_1728 PF02503 Polyphosphate kinase middle domain AMED_1728 PF13090 Polyphosphate kinase C-terminal domain 2 AMED_1728 PF17941 Polyphosphate kinase C-terminal domain 1 AMED_1728 PF13089 Polyphosphate kinase N-terminal domain AMED_1731 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AMED_1731 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AMED_1733 PF00710 Asparaginase, N-terminal AMED_1733 PF17763 Glutaminase/Asparaginase C-terminal domain AMED_1735 PF02424 ApbE family AMED_1737 PF00175 Oxidoreductase NAD-binding domain AMED_1737 PF00111 2Fe-2S iron-sulfur cluster binding domain AMED_1738 PF00486 Transcriptional regulatory protein, C terminal AMED_1738 PF00072 Response regulator receiver domain AMED_1739 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_1739 PF00512 His Kinase A (phospho-acceptor) domain AMED_1739 PF00672 HAMP domain AMED_1741 PF00392 Bacterial regulatory proteins, gntR family AMED_1742 PF01820 D-ala D-ala ligase N-terminus AMED_1742 PF07478 D-ala D-ala ligase C-terminus AMED_1745 PF00586 AIR synthase related protein, N-terminal domain AMED_1745 PF02769 AIR synthase related protein, C-terminal domain AMED_1747 PF16499 Alpha galactosidase A AMED_1747 PF17801 Alpha galactosidase C-terminal beta sandwich domain AMED_1748 PF00132 Bacterial transferase hexapeptide (six repeats) AMED_1749 PF03167 Uracil DNA glycosylase superfamily AMED_1751 PF00830 Ribosomal L28 family AMED_1752 PF02734 DAK2 domain AMED_1752 PF13684 Dihydroxyacetone kinase family AMED_1753 PF17191 RecG wedge domain AMED_1753 PF00271 Helicase conserved C-terminal domain AMED_1753 PF00270 DEAD/DEAH box helicase AMED_1756 PF05139 Erythromycin esterase AMED_1756 PF00156 Phosphoribosyl transferase domain AMED_1758 PF05922 Peptidase inhibitor I9 AMED_1758 PF00082 Subtilase family AMED_1758 PF04151 Bacterial pre-peptidase C-terminal domain AMED_1759 PF01609 Transposase DDE domain AMED_1759 PF13808 DDE_Tnp_1-associated AMED_1761 PF02436 Conserved carboxylase domain AMED_1761 PF00682 HMGL-like AMED_1761 PF02785 Biotin carboxylase C-terminal domain AMED_1761 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMED_1761 PF00364 Biotin-requiring enzyme AMED_1761 PF00289 Biotin carboxylase, N-terminal domain AMED_1762 PF00491 Arginase family AMED_1775 PF02470 MlaD protein AMED_1780 PF02405 Permease MlaE AMED_1782 PF00296 Luciferase-like monooxygenase AMED_1783 PF01494 FAD binding domain AMED_1785 PF17871 AAA lid domain AMED_1785 PF00004 ATPase family associated with various cellular activities (AAA) AMED_1785 PF02861 Clp amino terminal domain, pathogenicity island component AMED_1785 PF10431 C-terminal, D2-small domain, of ClpB protein AMED_1785 PF07724 AAA domain (Cdc48 subfamily) AMED_1786 PF12894 Anaphase-promoting complex subunit 4 WD40 domain AMED_1786 PF00400 WD domain, G-beta repeat AMED_1787 PF13538 UvrD-like helicase C-terminal domain AMED_1789 PF01467 Cytidylyltransferase-like AMED_1790 PF00545 ribonuclease AMED_1794 PF02620 Large ribosomal RNA subunit accumulation protein YceD AMED_1795 PF01783 Ribosomal L32p protein family AMED_1796 PF00035 Double-stranded RNA binding motif AMED_1796 PF14622 Ribonuclease-III-like AMED_1797 PF14592 Chondroitinase B AMED_1798 PF06827 Zinc finger found in FPG and IleRS AMED_1798 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMED_1798 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AMED_1802 PF08450 SMP-30/Gluconolactonase/LRE-like region AMED_1805 PF12697 Alpha/beta hydrolase family AMED_1807 PF00120 Glutamine synthetase, catalytic domain AMED_1808 PF07722 Peptidase C26 AMED_1809 PF00171 Aldehyde dehydrogenase family AMED_1813 PF02347 Glycine cleavage system P-protein AMED_1814 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMED_1814 PF01571 Aminomethyltransferase folate-binding domain AMED_1815 PF01597 Glycine cleavage H-protein AMED_1816 PF00464 Serine hydroxymethyltransferase AMED_1817 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AMED_1817 PF04055 Radical SAM superfamily AMED_1818 PF03313 Serine dehydratase alpha chain AMED_1818 PF03315 Serine dehydratase beta chain AMED_1819 PF04255 Protein of unknown function (DUF433) AMED_1821 PF07729 FCD domain AMED_1821 PF00392 Bacterial regulatory proteins, gntR family AMED_1822 PF00912 Transglycosylase AMED_1822 PF00905 Penicillin binding protein transpeptidase domain AMED_1823 PF01596 O-methyltransferase AMED_1824 PF00155 Aminotransferase class I and II AMED_1824 PF00392 Bacterial regulatory proteins, gntR family AMED_1825 PF01494 FAD binding domain AMED_1827 PF00106 short chain dehydrogenase AMED_1829 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_1829 PF14759 Reductase C-terminal AMED_1830 PF13411 MerR HTH family regulatory protein AMED_1830 PF07739 TipAS antibiotic-recognition domain AMED_1832 PF07690 Major Facilitator Superfamily AMED_1833 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMED_1834 PF13378 Enolase C-terminal domain-like AMED_1834 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMED_1837 PF00005 ABC transporter AMED_1838 PF02653 Branched-chain amino acid transport system / permease component AMED_1839 PF07729 FCD domain AMED_1839 PF00392 Bacterial regulatory proteins, gntR family AMED_1841 PF00248 Aldo/keto reductase family AMED_1843 PF08281 Sigma-70, region 4 AMED_1843 PF04542 Sigma-70 region 2 AMED_1845 PF02656 Domain of unknown function (DUF202) AMED_1849 PF02595 Glycerate kinase family AMED_1850 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMED_1850 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMED_1851 PF16875 Glycosyl hydrolase family 36 N-terminal domain AMED_1851 PF16874 Glycosyl hydrolase family 36 C-terminal domain AMED_1852 PF00480 ROK family AMED_1853 PF01547 Bacterial extracellular solute-binding protein AMED_1854 PF00528 Binding-protein-dependent transport system inner membrane component AMED_1855 PF00528 Binding-protein-dependent transport system inner membrane component AMED_1856 PF16499 Alpha galactosidase A AMED_1856 PF17801 Alpha galactosidase C-terminal beta sandwich domain AMED_1857 PF01144 Coenzyme A transferase AMED_1858 PF01144 Coenzyme A transferase AMED_1859 PF00108 Thiolase, N-terminal domain AMED_1859 PF02803 Thiolase, C-terminal domain AMED_1860 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal AMED_1860 PF00775 Dioxygenase AMED_1861 PF00775 Dioxygenase AMED_1862 PF12146 Serine aminopeptidase, S33 AMED_1863 PF02627 Carboxymuconolactone decarboxylase family AMED_1864 PF01614 Bacterial transcriptional regulator AMED_1864 PF09339 IclR helix-turn-helix domain AMED_1865 PF12804 MobA-like NTP transferase domain AMED_1866 PF00004 ATPase family associated with various cellular activities (AAA) AMED_1866 PF05362 Lon protease (S16) C-terminal proteolytic domain AMED_1866 PF02190 ATP-dependent protease La (LON) substrate-binding domain AMED_1870 PF01799 [2Fe-2S] binding domain AMED_1870 PF00111 2Fe-2S iron-sulfur cluster binding domain AMED_1871 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMED_1871 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMED_1872 PF00941 FAD binding domain in molybdopterin dehydrogenase AMED_1872 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMED_1874 PF08448 PAS fold AMED_1874 PF00990 Diguanylate cyclase, GGDEF domain AMED_1875 PF00743 Flavin-binding monooxygenase-like AMED_1876 PF00248 Aldo/keto reductase family AMED_1878 PF00149 Calcineurin-like phosphoesterase AMED_1881 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMED_1881 PF00205 Thiamine pyrophosphate enzyme, central domain AMED_1881 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMED_1882 PF04962 KduI/IolB family AMED_1884 PF00294 pfkB family carbohydrate kinase AMED_1885 PF00005 ABC transporter AMED_1886 PF02653 Branched-chain amino acid transport system / permease component AMED_1888 PF01261 Xylose isomerase-like TIM barrel AMED_1889 PF00356 Bacterial regulatory proteins, lacI family AMED_1890 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMED_1890 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMED_1891 PF00733 Asparagine synthase AMED_1891 PF13537 Glutamine amidotransferase domain AMED_1893 PF03814 Potassium-transporting ATPase A subunit AMED_1895 PF02669 K+-transporting ATPase, c chain AMED_1896 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_1896 PF00512 His Kinase A (phospho-acceptor) domain AMED_1896 PF02702 Osmosensitive K+ channel His kinase sensor domain AMED_1896 PF00582 Universal stress protein family AMED_1896 PF13493 Domain of unknown function (DUF4118) AMED_1897 PF00072 Response regulator receiver domain AMED_1897 PF00486 Transcriptional regulatory protein, C terminal AMED_1902 PF00708 Acylphosphatase AMED_1903 PF02463 RecF/RecN/SMC N terminal domain AMED_1903 PF06470 SMC proteins Flexible Hinge Domain AMED_1905 PF00474 Sodium:solute symporter family AMED_1906 PF03702 Anhydro-N-acetylmuramic acid kinase AMED_1907 PF00448 SRP54-type protein, GTPase domain AMED_1907 PF02881 SRP54-type protein, helical bundle domain AMED_1910 PF01614 Bacterial transcriptional regulator AMED_1910 PF09339 IclR helix-turn-helix domain AMED_1916 PF00375 Sodium:dicarboxylate symporter family AMED_1918 PF05651 Putative sugar diacid recognition AMED_1918 PF17853 GGDEF-like domain AMED_1918 PF13556 PucR C-terminal helix-turn-helix domain AMED_1919 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMED_1919 PF00941 FAD binding domain in molybdopterin dehydrogenase AMED_1920 PF00111 2Fe-2S iron-sulfur cluster binding domain AMED_1920 PF01799 [2Fe-2S] binding domain AMED_1921 PF01979 Amidohydrolase family AMED_1922 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMED_1922 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMED_1923 PF17801 Alpha galactosidase C-terminal beta sandwich domain AMED_1923 PF16499 Alpha galactosidase A AMED_1924 PF00440 Bacterial regulatory proteins, tetR family AMED_1926 PF01014 Uricase AMED_1927 PF00576 HIUase/Transthyretin family AMED_1930 PF01979 Amidohydrolase family AMED_1931 PF03561 Allantoicase repeat AMED_1933 PF13380 CoA binding domain AMED_1934 PF01053 Cys/Met metabolism PLP-dependent enzyme AMED_1938 PF04542 Sigma-70 region 2 AMED_1938 PF12680 SnoaL-like domain AMED_1938 PF08281 Sigma-70, region 4 AMED_1941 PF00909 Ammonium Transporter Family AMED_1942 PF00543 Nitrogen regulatory protein P-II AMED_1943 PF08335 GlnD PII-uridylyltransferase AMED_1943 PF01966 HD domain AMED_1944 PF01494 FAD binding domain AMED_1947 PF08448 PAS fold AMED_1947 PF00990 Diguanylate cyclase, GGDEF domain AMED_1949 PF00440 Bacterial regulatory proteins, tetR family AMED_1951 PF02735 Ku70/Ku80 beta-barrel domain AMED_1953 PF00005 ABC transporter AMED_1953 PF00664 ABC transporter transmembrane region AMED_1954 PF00448 SRP54-type protein, GTPase domain AMED_1954 PF02881 SRP54-type protein, helical bundle domain AMED_1954 PF02978 Signal peptide binding domain AMED_1955 PF01979 Amidohydrolase family AMED_1958 PF00886 Ribosomal protein S16 AMED_1960 PF05239 PRC-barrel domain AMED_1960 PF01782 RimM N-terminal domain AMED_1962 PF01746 tRNA (Guanine-1)-methyltransferase AMED_1963 PF01245 Ribosomal protein L19 AMED_1964 PF10502 Signal peptidase, peptidase S26 AMED_1965 PF01351 Ribonuclease HII AMED_1966 PF10611 Protein of unknown function (DUF2469) AMED_1967 PF02021 Uncharacterised protein family UPF0102 AMED_1968 PF01078 Magnesium chelatase, subunit ChlI AMED_1968 PF13335 Magnesium chelatase, subunit ChlI C-terminal AMED_1969 PF17782 DprA winged helix domain AMED_1969 PF02481 DNA recombination-mediator protein A AMED_1970 PF00589 Phage integrase family AMED_1970 PF02899 Phage integrase, N-terminal SAM-like domain AMED_1971 PF04539 Sigma-70 region 3 AMED_1971 PF04542 Sigma-70 region 2 AMED_1971 PF04545 Sigma-70, region 4 AMED_1972 PF01551 Peptidase family M23 AMED_1973 PF00318 Ribosomal protein S2 AMED_1974 PF00889 Elongation factor TS AMED_1975 PF00696 Amino acid kinase family AMED_1976 PF01765 Ribosome recycling factor AMED_1979 PF03551 Transcriptional regulator PadR-like family AMED_1979 PF13847 Methyltransferase domain AMED_1980 PF03551 Transcriptional regulator PadR-like family AMED_1981 PF01032 FecCD transport family AMED_1982 PF01032 FecCD transport family AMED_1983 PF00005 ABC transporter AMED_1984 PF01497 Periplasmic binding protein AMED_1985 PF02779 Transketolase, pyrimidine binding domain AMED_1985 PF02780 Transketolase, C-terminal domain AMED_1985 PF00456 Transketolase, thiamine diphosphate binding domain AMED_1987 PF04055 Radical SAM superfamily AMED_1989 PF05593 RHS Repeat AMED_1992 PF02633 Creatinine amidohydrolase AMED_1993 PF02913 FAD linked oxidases, C-terminal domain AMED_1993 PF01565 FAD binding domain AMED_1996 PF00005 ABC transporter AMED_1997 PF07969 Amidohydrolase family AMED_2000 PF01979 Amidohydrolase family AMED_2006 PF00384 Molybdopterin oxidoreductase AMED_2006 PF01568 Molydopterin dinucleotide binding domain AMED_2008 PF13411 MerR HTH family regulatory protein AMED_2009 PF07690 Major Facilitator Superfamily AMED_2012 PF03795 YCII-related domain AMED_2013 PF05368 NmrA-like family AMED_2015 PF08659 KR domain AMED_2015 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_2015 PF00550 Phosphopantetheine attachment site AMED_2015 PF00698 Acyl transferase domain AMED_2015 PF08240 Alcohol dehydrogenase GroES-like domain AMED_2015 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_2015 PF14765 Polyketide synthase dehydratase AMED_2015 PF16197 Ketoacyl-synthetase C-terminal extension AMED_2015 PF08990 Erythronolide synthase docking AMED_2016 PF01381 Helix-turn-helix AMED_2018 PF03795 YCII-related domain AMED_2019 PF04542 Sigma-70 region 2 AMED_2019 PF08281 Sigma-70, region 4 AMED_2020 PF00378 Enoyl-CoA hydratase/isomerase AMED_2022 PF03960 ArsC family AMED_2023 PF00291 Pyridoxal-phosphate dependent enzyme AMED_2027 PF00067 Cytochrome P450 AMED_2029 PF00931 NB-ARC domain AMED_2029 PF00486 Transcriptional regulatory protein, C terminal AMED_2029 PF03704 Bacterial transcriptional activator domain AMED_2031 PF13847 Methyltransferase domain AMED_2032 PF00392 Bacterial regulatory proteins, gntR family AMED_2032 PF00155 Aminotransferase class I and II AMED_2034 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMED_2036 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AMED_2036 PF13288 DXP reductoisomerase C-terminal domain AMED_2036 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AMED_2037 PF02163 Peptidase family M50 AMED_2037 PF17820 PDZ domain AMED_2038 PF04551 GcpE protein AMED_2044 PF00583 Acetyltransferase (GNAT) family AMED_2045 PF00905 Penicillin binding protein transpeptidase domain AMED_2046 PF00557 Metallopeptidase family M24 AMED_2047 PF01061 ABC-2 type transporter AMED_2048 PF00005 ABC transporter AMED_2048 PF13732 Domain of unknown function (DUF4162) AMED_2051 PF00392 Bacterial regulatory proteins, gntR family AMED_2051 PF07729 FCD domain AMED_2053 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMED_2053 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_2055 PF00089 Trypsin AMED_2056 PF13673 Acetyltransferase (GNAT) domain AMED_2057 PF00155 Aminotransferase class I and II AMED_2058 PF00271 Helicase conserved C-terminal domain AMED_2058 PF00270 DEAD/DEAH box helicase AMED_2066 PF03466 LysR substrate binding domain AMED_2066 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_2068 PF01266 FAD dependent oxidoreductase AMED_2069 PF03883 Peroxide stress protein YaaA AMED_2073 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMED_2074 PF09594 Glycosyltransferase family 87 AMED_2076 PF03129 Anticodon binding domain AMED_2076 PF04073 Aminoacyl-tRNA editing domain AMED_2076 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMED_2079 PF09924 Uncharacterised conserved protein (DUF2156) AMED_2084 PF00072 Response regulator receiver domain AMED_2084 PF00196 Bacterial regulatory proteins, luxR family AMED_2087 PF00487 Fatty acid desaturase AMED_2088 PF00175 Oxidoreductase NAD-binding domain AMED_2088 PF00970 Oxidoreductase FAD-binding domain AMED_2088 PF00042 Globin AMED_2089 PF00440 Bacterial regulatory proteins, tetR family AMED_2090 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AMED_2090 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AMED_2091 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AMED_2092 PF02233 NAD(P) transhydrogenase beta subunit AMED_2095 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMED_2095 PF00403 Heavy-metal-associated domain AMED_2095 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_2099 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_2099 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_2100 PF00550 Phosphopantetheine attachment site AMED_2101 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMED_2101 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMED_2102 PF00698 Acyl transferase domain AMED_2104 PF13556 PucR C-terminal helix-turn-helix domain AMED_2104 PF17853 GGDEF-like domain AMED_2105 PF00005 ABC transporter AMED_2105 PF13732 Domain of unknown function (DUF4162) AMED_2108 PF04973 Nicotinamide mononucleotide transporter AMED_2109 PF02652 L-lactate permease AMED_2112 PF01070 FMN-dependent dehydrogenase AMED_2113 PF17831 Pyruvate dehydrogenase E1 component middle domain AMED_2113 PF00456 Transketolase, thiamine diphosphate binding domain AMED_2114 PF11253 Protein of unknown function (DUF3052) AMED_2115 PF00578 AhpC/TSA family AMED_2116 PF00239 Resolvase, N terminal domain AMED_2116 PF02796 Helix-turn-helix domain of resolvase AMED_2118 PF01555 DNA methylase AMED_2133 PF12697 Alpha/beta hydrolase family AMED_2134 PF00899 ThiF family AMED_2139 PF07690 Major Facilitator Superfamily AMED_2143 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_2143 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_2143 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_2144 PF00106 short chain dehydrogenase AMED_2145 PF00266 Aminotransferase class-V AMED_2146 PF07729 FCD domain AMED_2146 PF00392 Bacterial regulatory proteins, gntR family AMED_2147 PF00149 Calcineurin-like phosphoesterase AMED_2149 PF00206 Lyase AMED_2149 PF10415 Fumarase C C-terminus AMED_2151 PF00324 Amino acid permease AMED_2152 PF00392 Bacterial regulatory proteins, gntR family AMED_2152 PF07729 FCD domain AMED_2153 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AMED_2153 PF07733 Bacterial DNA polymerase III alpha NTPase domain AMED_2153 PF14579 Helix-hairpin-helix motif AMED_2153 PF01336 OB-fold nucleic acid binding domain AMED_2153 PF02811 PHP domain AMED_2154 PF07690 Major Facilitator Superfamily AMED_2156 PF03734 L,D-transpeptidase catalytic domain AMED_2156 PF17964 Bacterial Ig domain AMED_2158 PF09335 SNARE associated Golgi protein AMED_2159 PF04055 Radical SAM superfamily AMED_2159 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AMED_2160 PF00106 short chain dehydrogenase AMED_2162 PF00440 Bacterial regulatory proteins, tetR family AMED_2164 PF03099 Biotin/lipoate A/B protein ligase family AMED_2166 PF08338 Domain of unknown function (DUF1731) AMED_2166 PF01370 NAD dependent epimerase/dehydratase family AMED_2168 PF02817 e3 binding domain AMED_2168 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMED_2168 PF00364 Biotin-requiring enzyme AMED_2169 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMED_2169 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_2175 PF02789 Cytosol aminopeptidase family, N-terminal domain AMED_2175 PF00883 Cytosol aminopeptidase family, catalytic domain AMED_2179 PF01063 Amino-transferase class IV AMED_2180 PF02277 Phosphoribosyltransferase AMED_2181 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AMED_2181 PF02542 YgbB family AMED_2184 PF01259 SAICAR synthetase AMED_2185 PF00248 Aldo/keto reductase family AMED_2187 PF11241 Protein of unknown function (DUF3043) AMED_2188 PF01521 Iron-sulphur cluster biosynthesis AMED_2190 PF00294 pfkB family carbohydrate kinase AMED_2192 PF13537 Glutamine amidotransferase domain AMED_2192 PF00733 Asparagine synthase AMED_2193 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AMED_2194 PF12270 Cytochrome c oxidase subunit IV AMED_2195 PF12833 Helix-turn-helix domain AMED_2195 PF01965 DJ-1/PfpI family AMED_2197 PF02885 Glycosyl transferase family, helical bundle domain AMED_2197 PF00591 Glycosyl transferase family, a/b domain AMED_2200 PF00510 Cytochrome c oxidase subunit III AMED_2201 PF00034 Cytochrome c AMED_2201 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMED_2202 PF00355 Rieske [2Fe-2S] domain AMED_2203 PF13631 Cytochrome b(N-terminal)/b6/petB AMED_2206 PF00929 Exonuclease AMED_2206 PF01541 GIY-YIG catalytic domain AMED_2209 PF00877 NlpC/P60 family AMED_2210 PF00534 Glycosyl transferases group 1 AMED_2210 PF13439 Glycosyltransferase Family 4 AMED_2213 PF00067 Cytochrome P450 AMED_2214 PF00202 Aminotransferase class-III AMED_2215 PF01740 STAS domain AMED_2215 PF00916 Sulfate permease family AMED_2216 PF01740 STAS domain AMED_2216 PF00916 Sulfate permease family AMED_2218 PF06968 Biotin and Thiamin Synthesis associated domain AMED_2218 PF04055 Radical SAM superfamily AMED_2220 PF01435 Peptidase family M48 AMED_2221 PF00004 ATPase family associated with various cellular activities (AAA) AMED_2221 PF02190 ATP-dependent protease La (LON) substrate-binding domain AMED_2221 PF05362 Lon protease (S16) C-terminal proteolytic domain AMED_2223 PF02445 Quinolinate synthetase A protein AMED_2224 PF02910 Fumarate reductase flavoprotein C-term AMED_2224 PF00890 FAD binding domain AMED_2225 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AMED_2225 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AMED_2226 PF00082 Subtilase family AMED_2234 PF13193 AMP-binding enzyme C-terminal domain AMED_2234 PF00501 AMP-binding enzyme AMED_2238 PF01580 FtsK/SpoIIIE family AMED_2243 PF02575 YbaB/EbfC DNA-binding family AMED_2245 PF17189 Glycosyl hydrolase family 30 beta sandwich domain AMED_2247 PF05108 Type VII secretion system ESX-1, transport TM domain B AMED_2248 PF00196 Bacterial regulatory proteins, luxR family AMED_2248 PF00072 Response regulator receiver domain AMED_2249 PF00072 Response regulator receiver domain AMED_2249 PF00196 Bacterial regulatory proteins, luxR family AMED_2250 PF00795 Carbon-nitrogen hydrolase AMED_2251 PF00815 Histidinol dehydrogenase AMED_2252 PF00155 Aminotransferase class I and II AMED_2253 PF00475 Imidazoleglycerol-phosphate dehydratase AMED_2254 PF12706 Beta-lactamase superfamily domain AMED_2257 PF00561 alpha/beta hydrolase fold AMED_2258 PF03176 MMPL family AMED_2259 PF08361 MAATS-type transcriptional repressor, C-terminal region AMED_2259 PF00440 Bacterial regulatory proteins, tetR family AMED_2260 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family AMED_2261 PF00376 MerR family regulatory protein AMED_2261 PF09278 MerR, DNA binding AMED_2262 PF00456 Transketolase, thiamine diphosphate binding domain AMED_2263 PF02779 Transketolase, pyrimidine binding domain AMED_2264 PF00293 NUDIX domain AMED_2266 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_2266 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_2266 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_2269 PF00117 Glutamine amidotransferase class-I AMED_2270 PF00977 Histidine biosynthesis protein AMED_2280 PF04539 Sigma-70 region 3 AMED_2280 PF04542 Sigma-70 region 2 AMED_2280 PF04545 Sigma-70, region 4 AMED_2281 PF02333 Phytase AMED_2282 PF00977 Histidine biosynthesis protein AMED_2284 PF01502 Phosphoribosyl-AMP cyclohydrolase AMED_2291 PF00425 chorismate binding enzyme AMED_2291 PF04715 Anthranilate synthase component I, N terminal region AMED_2293 PF00218 Indole-3-glycerol phosphate synthase AMED_2294 PF00291 Pyridoxal-phosphate dependent enzyme AMED_2295 PF00290 Tryptophan synthase alpha chain AMED_2296 PF13411 MerR HTH family regulatory protein AMED_2300 PF03951 Glutamine synthetase, beta-Grasp domain AMED_2300 PF00120 Glutamine synthetase, catalytic domain AMED_2303 PF07687 Peptidase dimerisation domain AMED_2303 PF01546 Peptidase family M20/M25/M40 AMED_2304 PF01790 Prolipoprotein diacylglyceryl transferase AMED_2306 PF01645 Conserved region in glutamate synthase AMED_2306 PF01493 GXGXG motif AMED_2306 PF00310 Glutamine amidotransferases class-II AMED_2306 PF04898 Glutamate synthase central domain AMED_2307 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_2307 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AMED_2310 PF00561 alpha/beta hydrolase fold AMED_2311 PF01474 Class-II DAHP synthetase family AMED_2314 PF06974 Protein of unknown function (DUF1298) AMED_2314 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain AMED_2316 PF01145 SPFH domain / Band 7 family AMED_2316 PF15975 Flotillin AMED_2318 PF00069 Protein kinase domain AMED_2318 PF03793 PASTA domain AMED_2321 PF00296 Luciferase-like monooxygenase AMED_2323 PF01593 Flavin containing amine oxidoreductase AMED_2326 PF02219 Methylenetetrahydrofolate reductase AMED_2335 PF01327 Polypeptide deformylase AMED_2336 PF00271 Helicase conserved C-terminal domain AMED_2336 PF08494 DEAD/H associated AMED_2336 PF00270 DEAD/DEAH box helicase AMED_2337 PF08220 DeoR-like helix-turn-helix domain AMED_2337 PF00455 DeoR C terminal sensor domain AMED_2338 PF07690 Major Facilitator Superfamily AMED_2339 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AMED_2343 PF00154 recA bacterial DNA recombination protein AMED_2344 PF02631 RecX family AMED_2348 PF01081 KDPG and KHG aldolase AMED_2349 PF00920 Dehydratase family AMED_2352 PF00890 FAD binding domain AMED_2352 PF02910 Fumarate reductase flavoprotein C-term AMED_2353 PF13085 2Fe-2S iron-sulfur cluster binding domain AMED_2353 PF13183 4Fe-4S dicluster domain AMED_2360 PF00528 Binding-protein-dependent transport system inner membrane component AMED_2361 PF00528 Binding-protein-dependent transport system inner membrane component AMED_2362 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMED_2363 PF00005 ABC transporter AMED_2364 PF00072 Response regulator receiver domain AMED_2364 PF00486 Transcriptional regulatory protein, C terminal AMED_2365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_2365 PF00672 HAMP domain AMED_2365 PF00512 His Kinase A (phospho-acceptor) domain AMED_2367 PF01638 HxlR-like helix-turn-helix AMED_2371 PF03372 Endonuclease/Exonuclease/phosphatase family AMED_2377 PF01494 FAD binding domain AMED_2378 PF00440 Bacterial regulatory proteins, tetR family AMED_2378 PF02909 Tetracyclin repressor-like, C-terminal domain AMED_2379 PF01494 FAD binding domain AMED_2380 PF00919 Uncharacterized protein family UPF0004 AMED_2380 PF04055 Radical SAM superfamily AMED_2381 PF00919 Uncharacterized protein family UPF0004 AMED_2381 PF04055 Radical SAM superfamily AMED_2383 PF03993 Domain of Unknown Function (DUF349) AMED_2385 PF01678 Diaminopimelate epimerase AMED_2386 PF00133 tRNA synthetases class I (I, L, M and V) AMED_2386 PF08264 Anticodon-binding domain of tRNA AMED_2389 PF01926 50S ribosome-binding GTPase AMED_2389 PF16360 GTP-binding GTPase Middle Region AMED_2389 PF13167 GTP-binding GTPase N-terminal AMED_2391 PF00717 Peptidase S24-like AMED_2391 PF01726 LexA DNA binding domain AMED_2393 PF03477 ATP cone domain AMED_2394 PF08471 Class II vitamin B12-dependent ribonucleotide reductase AMED_2394 PF02867 Ribonucleotide reductase, barrel domain AMED_2398 PF02525 Flavodoxin-like fold AMED_2400 PF00326 Prolyl oligopeptidase family AMED_2400 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AMED_2403 PF00155 Aminotransferase class I and II AMED_2403 PF00392 Bacterial regulatory proteins, gntR family AMED_2407 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AMED_2407 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMED_2408 PF02698 DUF218 domain AMED_2409 PF01565 FAD binding domain AMED_2409 PF08031 Berberine and berberine like AMED_2410 PF00196 Bacterial regulatory proteins, luxR family AMED_2410 PF00072 Response regulator receiver domain AMED_2411 PF07730 Histidine kinase AMED_2414 PF01370 NAD dependent epimerase/dehydratase family AMED_2415 PF00288 GHMP kinases N terminal domain AMED_2415 PF08544 GHMP kinases C terminal AMED_2415 PF10509 Galactokinase galactose-binding signature AMED_2416 PF18357 Diphteria toxin repressor SH3 domain AMED_2416 PF01325 Iron dependent repressor, N-terminal DNA binding domain AMED_2416 PF02742 Iron dependent repressor, metal binding and dimerisation domain AMED_2417 PF00581 Rhodanese-like domain AMED_2418 PF00850 Histone deacetylase domain AMED_2420 PF00144 Beta-lactamase AMED_2421 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_2421 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_2422 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_2422 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_2422 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_2426 PF02405 Permease MlaE AMED_2427 PF02405 Permease MlaE AMED_2437 PF12897 Alanine-glyoxylate amino-transferase AMED_2439 PF01494 FAD binding domain AMED_2440 PF00356 Bacterial regulatory proteins, lacI family AMED_2442 PF00528 Binding-protein-dependent transport system inner membrane component AMED_2443 PF00528 Binding-protein-dependent transport system inner membrane component AMED_2444 PF00232 Glycosyl hydrolase family 1 AMED_2445 PF00501 AMP-binding enzyme AMED_2449 PF17886 HSP20-like domain found in ArsA AMED_2449 PF02374 Anion-transporting ATPase AMED_2451 PF00480 ROK family AMED_2454 PF04107 Glutamate-cysteine ligase family 2(GCS2) AMED_2456 PF12146 Serine aminopeptidase, S33 AMED_2457 PF01553 Acyltransferase AMED_2458 PF16473 3' exoribonuclease, RNase T-like AMED_2459 PF00793 DAHP synthetase I family AMED_2460 PF00365 Phosphofructokinase AMED_2462 PF04542 Sigma-70 region 2 AMED_2462 PF08281 Sigma-70, region 4 AMED_2463 PF00221 Aromatic amino acid lyase AMED_2465 PF01638 HxlR-like helix-turn-helix AMED_2466 PF01022 Bacterial regulatory protein, arsR family AMED_2467 PF00704 Glycosyl hydrolases family 18 AMED_2467 PF00041 Fibronectin type III domain AMED_2467 PF00553 Cellulose binding domain AMED_2469 PF00224 Pyruvate kinase, barrel domain AMED_2469 PF02887 Pyruvate kinase, alpha/beta domain AMED_2474 PF00196 Bacterial regulatory proteins, luxR family AMED_2474 PF00072 Response regulator receiver domain AMED_2475 PF00171 Aldehyde dehydrogenase family AMED_2477 PF00440 Bacterial regulatory proteins, tetR family AMED_2478 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_2478 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_2478 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_2479 PF02515 CoA-transferase family III AMED_2481 PF00378 Enoyl-CoA hydratase/isomerase AMED_2487 PF07690 Major Facilitator Superfamily AMED_2488 PF00440 Bacterial regulatory proteins, tetR family AMED_2489 PF00474 Sodium:solute symporter family AMED_2492 PF03259 Roadblock/LC7 domain AMED_2498 PF02310 B12 binding domain AMED_2498 PF01642 Methylmalonyl-CoA mutase AMED_2499 PF13847 Methyltransferase domain AMED_2500 PF00296 Luciferase-like monooxygenase AMED_2501 PF17925 Tetracyclin repressor-like, C-terminal domain AMED_2501 PF00440 Bacterial regulatory proteins, tetR family AMED_2502 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_2502 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_2502 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_2503 PF00176 SNF2 family N-terminal domain AMED_2503 PF00271 Helicase conserved C-terminal domain AMED_2503 PF12419 SNF2 Helicase protein AMED_2506 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain AMED_2506 PF06974 Protein of unknown function (DUF1298) AMED_2507 PF04075 F420H(2)-dependent quinone reductase AMED_2508 PF00561 alpha/beta hydrolase fold AMED_2509 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_2509 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_2510 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_2510 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_2510 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_2511 PF13452 N-terminal half of MaoC dehydratase AMED_2515 PF01687 Riboflavin kinase AMED_2515 PF06574 FAD synthetase AMED_2517 PF00970 Oxidoreductase FAD-binding domain AMED_2517 PF00111 2Fe-2S iron-sulfur cluster binding domain AMED_2517 PF00175 Oxidoreductase NAD-binding domain AMED_2519 PF00355 Rieske [2Fe-2S] domain AMED_2521 PF00890 FAD binding domain AMED_2522 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AMED_2522 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_2523 PF12697 Alpha/beta hydrolase family AMED_2524 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_2525 PF01613 Flavin reductase like domain AMED_2528 PF12706 Beta-lactamase superfamily domain AMED_2529 PF00487 Fatty acid desaturase AMED_2530 PF17760 UvrA interaction domain AMED_2530 PF17755 UvrA DNA-binding domain AMED_2530 PF00005 ABC transporter AMED_2534 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_2534 PF03466 LysR substrate binding domain AMED_2535 PF07690 Major Facilitator Superfamily AMED_2536 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_2536 PF14759 Reductase C-terminal AMED_2541 PF04545 Sigma-70, region 4 AMED_2541 PF04542 Sigma-70 region 2 AMED_2548 PF01979 Amidohydrolase family AMED_2549 PF00561 alpha/beta hydrolase fold AMED_2550 PF00108 Thiolase, N-terminal domain AMED_2550 PF02803 Thiolase, C-terminal domain AMED_2551 PF00067 Cytochrome P450 AMED_2554 PF03631 Virulence factor BrkB AMED_2558 PF00378 Enoyl-CoA hydratase/isomerase AMED_2559 PF13193 AMP-binding enzyme C-terminal domain AMED_2559 PF00501 AMP-binding enzyme AMED_2560 PF03060 Nitronate monooxygenase AMED_2561 PF00089 Trypsin AMED_2562 PF13520 Amino acid permease AMED_2563 PF00392 Bacterial regulatory proteins, gntR family AMED_2563 PF07702 UTRA domain AMED_2567 PF05681 Fumarate hydratase (Fumerase) AMED_2567 PF05683 Fumarase C-terminus AMED_2568 PF00140 Sigma-70 factor, region 1.2 AMED_2568 PF04542 Sigma-70 region 2 AMED_2568 PF04545 Sigma-70, region 4 AMED_2568 PF04539 Sigma-70 region 3 AMED_2569 PF02580 D-Tyr-tRNA(Tyr) deacylase AMED_2570 PF05175 Methyltransferase small domain AMED_2570 PF17827 PrmC N-terminal domain AMED_2571 PF01546 Peptidase family M20/M25/M40 AMED_2571 PF07687 Peptidase dimerisation domain AMED_2573 PF00294 pfkB family carbohydrate kinase AMED_2574 PF04227 Indigoidine synthase A like protein AMED_2579 PF00873 AcrB/AcrD/AcrF family AMED_2581 PF04851 Type III restriction enzyme, res subunit AMED_2582 PF13407 Periplasmic binding protein domain AMED_2583 PF00005 ABC transporter AMED_2584 PF02653 Branched-chain amino acid transport system / permease component AMED_2588 PF00120 Glutamine synthetase, catalytic domain AMED_2588 PF03951 Glutamine synthetase, beta-Grasp domain AMED_2590 PF13520 Amino acid permease AMED_2591 PF02446 4-alpha-glucanotransferase AMED_2592 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMED_2592 PF00128 Alpha amylase, catalytic domain AMED_2593 PF00128 Alpha amylase, catalytic domain AMED_2594 PF00128 Alpha amylase, catalytic domain AMED_2594 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMED_2595 PF00128 Alpha amylase, catalytic domain AMED_2595 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMED_2596 PF00128 Alpha amylase, catalytic domain AMED_2596 PF11896 Domain of unknown function (DUF3416) AMED_2597 PF16657 Maltogenic Amylase, C-terminal domain AMED_2597 PF00128 Alpha amylase, catalytic domain AMED_2598 PF18085 Maltokinase N-terminal cap domain AMED_2599 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMED_2599 PF02806 Alpha amylase, C-terminal all-beta domain AMED_2599 PF00128 Alpha amylase, catalytic domain AMED_2601 PF04542 Sigma-70 region 2 AMED_2601 PF00140 Sigma-70 factor, region 1.2 AMED_2601 PF04545 Sigma-70, region 4 AMED_2601 PF04539 Sigma-70 region 3 AMED_2602 PF00480 ROK family AMED_2603 PF00459 Inositol monophosphatase family AMED_2607 PF00692 dUTPase AMED_2612 PF02080 TrkA-C domain AMED_2612 PF02254 TrkA-N domain AMED_2613 PF02254 TrkA-N domain AMED_2613 PF02080 TrkA-C domain AMED_2614 PF13520 Amino acid permease AMED_2615 PF01938 TRAM domain AMED_2615 PF05958 tRNA (Uracil-5-)-methyltransferase AMED_2618 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AMED_2618 PF02780 Transketolase, C-terminal domain AMED_2618 PF02779 Transketolase, pyrimidine binding domain AMED_2619 PF00356 Bacterial regulatory proteins, lacI family AMED_2620 PF00171 Aldehyde dehydrogenase family AMED_2621 PF00205 Thiamine pyrophosphate enzyme, central domain AMED_2621 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMED_2621 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMED_2622 PF00491 Arginase family AMED_2624 PF13556 PucR C-terminal helix-turn-helix domain AMED_2625 PF00486 Transcriptional regulatory protein, C terminal AMED_2625 PF00072 Response regulator receiver domain AMED_2626 PF00672 HAMP domain AMED_2626 PF00512 His Kinase A (phospho-acceptor) domain AMED_2626 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_2627 PF07859 alpha/beta hydrolase fold AMED_2630 PF00378 Enoyl-CoA hydratase/isomerase AMED_2630 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMED_2630 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMED_2631 PF00108 Thiolase, N-terminal domain AMED_2631 PF02803 Thiolase, C-terminal domain AMED_2634 PF01425 Amidase AMED_2635 PF02785 Biotin carboxylase C-terminal domain AMED_2635 PF00289 Biotin carboxylase, N-terminal domain AMED_2635 PF00364 Biotin-requiring enzyme AMED_2635 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMED_2638 PF13520 Amino acid permease AMED_2639 PF02909 Tetracyclin repressor-like, C-terminal domain AMED_2639 PF00440 Bacterial regulatory proteins, tetR family AMED_2641 PF00072 Response regulator receiver domain AMED_2641 PF00196 Bacterial regulatory proteins, luxR family AMED_2643 PF01208 Uroporphyrinogen decarboxylase (URO-D) AMED_2646 PF02515 CoA-transferase family III AMED_2648 PF05114 Protein of unknown function (DUF692) AMED_2651 PF01641 SelR domain AMED_2653 PF03793 PASTA domain AMED_2653 PF00069 Protein kinase domain AMED_2654 PF09335 SNARE associated Golgi protein AMED_2655 PF04679 ATP dependent DNA ligase C terminal region AMED_2655 PF01068 ATP dependent DNA ligase domain AMED_2655 PF13298 DNA polymerase Ligase (LigD) AMED_2657 PF00296 Luciferase-like monooxygenase AMED_2658 PF00575 S1 RNA binding domain AMED_2660 PF13556 PucR C-terminal helix-turn-helix domain AMED_2660 PF17853 GGDEF-like domain AMED_2660 PF06018 CodY GAF-like domain AMED_2661 PF00171 Aldehyde dehydrogenase family AMED_2662 PF01619 Proline dehydrogenase AMED_2663 PF00085 Thioredoxin AMED_2664 PF10944 Protein of unknown function (DUF2630) AMED_2665 PF03795 YCII-related domain AMED_2667 PF04542 Sigma-70 region 2 AMED_2667 PF08281 Sigma-70, region 4 AMED_2669 PF01068 ATP dependent DNA ligase domain AMED_2669 PF04679 ATP dependent DNA ligase C terminal region AMED_2674 PF03780 Asp23 family, cell envelope-related function AMED_2676 PF04542 Sigma-70 region 2 AMED_2676 PF08281 Sigma-70, region 4 AMED_2680 PF01266 FAD dependent oxidoreductase AMED_2681 PF02449 Beta-galactosidase AMED_2681 PF08532 Beta-galactosidase trimerisation domain AMED_2681 PF08533 Beta-galactosidase C-terminal domain AMED_2683 PF00202 Aminotransferase class-III AMED_2684 PF01022 Bacterial regulatory protein, arsR family AMED_2686 PF03976 Polyphosphate kinase 2 (PPK2) AMED_2687 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AMED_2687 PF00326 Prolyl oligopeptidase family AMED_2689 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AMED_2690 PF02641 Uncharacterized ACR, COG1993 AMED_2691 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AMED_2692 PF00282 Pyridoxal-dependent decarboxylase conserved domain AMED_2693 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AMED_2694 PF06276 Ferric iron reductase FhuF-like transporter AMED_2694 PF04183 IucA / IucC family AMED_2695 PF00120 Glutamine synthetase, catalytic domain AMED_2696 PF01565 FAD binding domain AMED_2696 PF08031 Berberine and berberine like AMED_2697 PF13191 AAA ATPase domain AMED_2697 PF00211 Adenylate and Guanylate cyclase catalytic domain AMED_2698 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_2698 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMED_2699 PF04055 Radical SAM superfamily AMED_2699 PF04055 Radical SAM superfamily AMED_2701 PF01336 OB-fold nucleic acid binding domain AMED_2701 PF00152 tRNA synthetases class II (D, K and N) AMED_2701 PF02938 GAD domain AMED_2706 PF00067 Cytochrome P450 AMED_2707 PF00440 Bacterial regulatory proteins, tetR family AMED_2708 PF00004 ATPase family associated with various cellular activities (AAA) AMED_2708 PF16193 AAA C-terminal domain AMED_2708 PF12002 MgsA AAA+ ATPase C terminal AMED_2710 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMED_2710 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMED_2713 PF02272 DHHA1 domain AMED_2713 PF01411 tRNA synthetases class II (A) AMED_2713 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMED_2714 PF03652 Holliday junction resolvase AMED_2715 PF02618 YceG-like family AMED_2716 PF01488 Shikimate / quinate 5-dehydrogenase AMED_2716 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AMED_2716 PF08501 Shikimate dehydrogenase substrate binding domain AMED_2717 PF04229 GrpB protein AMED_2718 PF00440 Bacterial regulatory proteins, tetR family AMED_2718 PF16295 Tetracyclin repressor-like, C-terminal domain AMED_2720 PF12146 Serine aminopeptidase, S33 AMED_2720 PF13026 Protein of unknown function (DUF3887) AMED_2722 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMED_2722 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMED_2722 PF01842 ACT domain AMED_2724 PF00381 PTS HPr component phosphorylation site AMED_2725 PF00367 phosphotransferase system, EIIB AMED_2725 PF02378 Phosphotransferase system, EIIC AMED_2727 PF00367 phosphotransferase system, EIIB AMED_2727 PF02378 Phosphotransferase system, EIIC AMED_2728 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AMED_2728 PF02378 Phosphotransferase system, EIIC AMED_2728 PF00367 phosphotransferase system, EIIB AMED_2731 PF04545 Sigma-70, region 4 AMED_2731 PF04542 Sigma-70 region 2 AMED_2733 PF01264 Chorismate synthase AMED_2734 PF01202 Shikimate kinase AMED_2735 PF01761 3-dehydroquinate synthase AMED_2736 PF01220 Dehydroquinase class II AMED_2740 PF00557 Metallopeptidase family M24 AMED_2740 PF01321 Creatinase/Prolidase N-terminal domain AMED_2741 PF09285 Elongation factor P, C-terminal AMED_2741 PF08207 Elongation factor P (EF-P) KOW-like domain AMED_2741 PF01132 Elongation factor P (EF-P) OB domain AMED_2742 PF01029 NusB family AMED_2745 PF00156 Phosphoribosyl transferase domain AMED_2746 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMED_2746 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMED_2747 PF01979 Amidohydrolase family AMED_2749 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AMED_2749 PF00117 Glutamine amidotransferase class-I AMED_2750 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system AMED_2752 PF02142 MGS-like domain AMED_2752 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AMED_2752 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMED_2753 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AMED_2755 PF00625 Guanylate kinase AMED_2756 PF01192 RNA polymerase Rpb6 AMED_2757 PF04127 DNA / pantothenate metabolism flavoprotein AMED_2757 PF02441 Flavoprotein AMED_2758 PF02772 S-adenosylmethionine synthetase, central domain AMED_2758 PF00438 S-adenosylmethionine synthetase, N-terminal domain AMED_2758 PF02773 S-adenosylmethionine synthetase, C-terminal domain AMED_2759 PF17764 3′ DNA-binding domain (3′BD) AMED_2764 PF02911 Formyl transferase, C-terminal domain AMED_2764 PF00551 Formyl transferase AMED_2765 PF01189 16S rRNA methyltransferase RsmB/F AMED_2765 PF01029 NusB family AMED_2766 PF02441 Flavoprotein AMED_2766 PF04127 DNA / pantothenate metabolism flavoprotein AMED_2767 PF00144 Beta-lactamase AMED_2768 PF00245 Alkaline phosphatase AMED_2769 PF00072 Response regulator receiver domain AMED_2769 PF00196 Bacterial regulatory proteins, luxR family AMED_2770 PF07730 Histidine kinase AMED_2771 PF00834 Ribulose-phosphate 3 epimerase family AMED_2772 PF00677 Lumazine binding domain AMED_2773 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AMED_2773 PF00925 GTP cyclohydrolase II AMED_2774 PF00885 6,7-dimethyl-8-ribityllumazine synthase AMED_2775 PF10756 Bacterial PH domain AMED_2778 PF01541 GIY-YIG catalytic domain AMED_2778 PF02151 UvrB/uvrC motif AMED_2778 PF08459 UvrC Helix-hairpin-helix N-terminal AMED_2779 PF03668 P-loop ATPase protein family AMED_2780 PF01933 Uncharacterised protein family UPF0052 AMED_2781 PF02650 WhiA C-terminal HTH domain AMED_2781 PF10298 WhiA N-terminal LAGLIDADG-like domain AMED_2781 PF14527 WhiA LAGLIDADG-like domain AMED_2782 PF00535 Glycosyl transferase family 2 AMED_2783 PF04116 Fatty acid hydroxylase superfamily AMED_2787 PF16990 Carbohydrate binding module (family 35) AMED_2787 PF00703 Glycosyl hydrolases family 2 AMED_2787 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain AMED_2787 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMED_2788 PF01218 Coproporphyrinogen III oxidase AMED_2796 PF01810 LysE type translocator AMED_2798 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMED_2798 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AMED_2799 PF00162 Phosphoglycerate kinase AMED_2800 PF00121 Triosephosphate isomerase AMED_2801 PF03840 Preprotein translocase SecG subunit AMED_2803 PF17200 Single Cache domain 2 AMED_2803 PF07730 Histidine kinase AMED_2804 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AMED_2806 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AMED_2806 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AMED_2807 PF00342 Phosphoglucose isomerase AMED_2808 PF00923 Transaldolase/Fructose-6-phosphate aldolase AMED_2809 PF00456 Transketolase, thiamine diphosphate binding domain AMED_2809 PF02780 Transketolase, C-terminal domain AMED_2809 PF02779 Transketolase, pyrimidine binding domain AMED_2810 PF01040 UbiA prenyltransferase family AMED_2817 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMED_2818 PF08240 Alcohol dehydrogenase GroES-like domain AMED_2818 PF00107 Zinc-binding dehydrogenase AMED_2827 PF00005 ABC transporter AMED_2827 PF13732 Domain of unknown function (DUF4162) AMED_2830 PF01458 Uncharacterized protein family (UPF0051) AMED_2831 PF01458 Uncharacterized protein family (UPF0051) AMED_2832 PF00005 ABC transporter AMED_2833 PF00266 Aminotransferase class-V AMED_2834 PF01592 NifU-like N terminal domain AMED_2835 PF01883 Iron-sulfur cluster assembly protein AMED_2837 PF02694 Uncharacterised BCR, YnfA/UPF0060 family AMED_2839 PF03109 ABC1 family AMED_2840 PF02031 Streptomyces extracellular neutral proteinase (M7) family AMED_2841 PF07730 Histidine kinase AMED_2841 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_2842 PF00072 Response regulator receiver domain AMED_2842 PF00196 Bacterial regulatory proteins, luxR family AMED_2843 PF01209 ubiE/COQ5 methyltransferase family AMED_2845 PF00009 Elongation factor Tu GTP binding domain AMED_2846 PF01507 Phosphoadenosine phosphosulfate reductase family AMED_2849 PF00106 short chain dehydrogenase AMED_2850 PF13181 Tetratricopeptide repeat AMED_2854 PF00563 EAL domain AMED_2854 PF03707 Bacterial signalling protein N terminal repeat AMED_2854 PF00990 Diguanylate cyclase, GGDEF domain AMED_2858 PF01966 HD domain AMED_2858 PF13286 Phosphohydrolase-associated domain AMED_2864 PF00296 Luciferase-like monooxygenase AMED_2866 PF00005 ABC transporter AMED_2866 PF00664 ABC transporter transmembrane region AMED_2868 PF13580 SIS domain AMED_2871 PF03816 Cell envelope-related transcriptional attenuator domain AMED_2872 PF13302 Acetyltransferase (GNAT) domain AMED_2873 PF00578 AhpC/TSA family AMED_2874 PF03707 Bacterial signalling protein N terminal repeat AMED_2874 PF00990 Diguanylate cyclase, GGDEF domain AMED_2874 PF00563 EAL domain AMED_2875 PF00067 Cytochrome P450 AMED_2877 PF00293 NUDIX domain AMED_2878 PF00268 Ribonucleotide reductase, small chain AMED_2879 PF00317 Ribonucleotide reductase, all-alpha domain AMED_2879 PF03477 ATP cone domain AMED_2879 PF02867 Ribonucleotide reductase, barrel domain AMED_2881 PF00378 Enoyl-CoA hydratase/isomerase AMED_2884 PF08608 Wyosine base formation AMED_2884 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AMED_2886 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_2886 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_2886 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_2887 PF01039 Carboxyl transferase domain AMED_2888 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMED_2888 PF00364 Biotin-requiring enzyme AMED_2888 PF00289 Biotin carboxylase, N-terminal domain AMED_2888 PF02785 Biotin carboxylase C-terminal domain AMED_2889 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_2889 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_2889 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_2893 PF03023 Lipid II flippase MurJ AMED_2896 PF00990 Diguanylate cyclase, GGDEF domain AMED_2896 PF17151 Periplasmic sensor domain AMED_2898 PF03171 2OG-Fe(II) oxygenase superfamily AMED_2898 PF14226 non-haem dioxygenase in morphine synthesis N-terminal AMED_2904 PF00440 Bacterial regulatory proteins, tetR family AMED_2905 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMED_2905 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMED_2906 PF00440 Bacterial regulatory proteins, tetR family AMED_2907 PF03664 Glycosyl hydrolase family 62 AMED_2907 PF00652 Ricin-type beta-trefoil lectin domain AMED_2911 PF17754 MftR C-terminal domain AMED_2911 PF00440 Bacterial regulatory proteins, tetR family AMED_2912 PF13411 MerR HTH family regulatory protein AMED_2915 PF00400 WD domain, G-beta repeat AMED_2915 PF12894 Anaphase-promoting complex subunit 4 WD40 domain AMED_2916 PF01494 FAD binding domain AMED_2918 PF01494 FAD binding domain AMED_2930 PF00561 alpha/beta hydrolase fold AMED_2931 PF00196 Bacterial regulatory proteins, luxR family AMED_2931 PF00072 Response regulator receiver domain AMED_2945 PF00106 short chain dehydrogenase AMED_2947 PF01047 MarR family AMED_2953 PF04545 Sigma-70, region 4 AMED_2953 PF04542 Sigma-70 region 2 AMED_2955 PF12327 FtsZ family, C-terminal domain AMED_2955 PF00091 Tubulin/FtsZ family, GTPase domain AMED_2957 PF01168 Alanine racemase, N-terminal domain AMED_2958 PF04472 Cell division protein SepF AMED_2960 PF05103 DivIVA protein AMED_2963 PF07690 Major Facilitator Superfamily AMED_2964 PF00133 tRNA synthetases class I (I, L, M and V) AMED_2964 PF08264 Anticodon-binding domain of tRNA AMED_2967 PF00999 Sodium/hydrogen exchanger family AMED_2967 PF03471 Transporter associated domain AMED_2967 PF02080 TrkA-C domain AMED_2968 PF00266 Aminotransferase class-V AMED_2970 PF01252 Signal peptidase (SPase) II AMED_2971 PF00849 RNA pseudouridylate synthase AMED_2975 PF00296 Luciferase-like monooxygenase AMED_2977 PF02541 Ppx/GppA phosphatase family AMED_2978 PF03632 Glycosyl hydrolase family 65 central catalytic domain AMED_2978 PF03633 Glycosyl hydrolase family 65, C-terminal domain AMED_2978 PF03636 Glycosyl hydrolase family 65, N-terminal domain AMED_2979 PF13419 Haloacid dehalogenase-like hydrolase AMED_2980 PF01022 Bacterial regulatory protein, arsR family AMED_2985 PF00480 ROK family AMED_2987 PF03055 Retinal pigment epithelial membrane protein AMED_2991 PF08281 Sigma-70, region 4 AMED_2991 PF04542 Sigma-70 region 2 AMED_2992 PF00034 Cytochrome c AMED_2992 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMED_2992 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMED_2993 PF01799 [2Fe-2S] binding domain AMED_2993 PF00111 2Fe-2S iron-sulfur cluster binding domain AMED_2994 PF13556 PucR C-terminal helix-turn-helix domain AMED_2994 PF17853 GGDEF-like domain AMED_2997 PF00440 Bacterial regulatory proteins, tetR family AMED_2997 PF08359 YsiA-like protein, C-terminal region AMED_2998 PF00106 short chain dehydrogenase AMED_2999 PF00248 Aldo/keto reductase family AMED_3000 PF17871 AAA lid domain AMED_3000 PF00004 ATPase family associated with various cellular activities (AAA) AMED_3000 PF07724 AAA domain (Cdc48 subfamily) AMED_3000 PF10431 C-terminal, D2-small domain, of ClpB protein AMED_3000 PF02861 Clp amino terminal domain, pathogenicity island component AMED_3002 PF00962 Adenosine/AMP deaminase AMED_3004 PF00270 DEAD/DEAH box helicase AMED_3004 PF00271 Helicase conserved C-terminal domain AMED_3004 PF00570 HRDC domain AMED_3004 PF09382 RQC domain AMED_3004 PF16124 RecQ zinc-binding AMED_3010 PF09278 MerR, DNA binding AMED_3010 PF00376 MerR family regulatory protein AMED_3013 PF00672 HAMP domain AMED_3013 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_3013 PF00512 His Kinase A (phospho-acceptor) domain AMED_3014 PF00072 Response regulator receiver domain AMED_3014 PF00486 Transcriptional regulatory protein, C terminal AMED_3016 PF00282 Pyridoxal-dependent decarboxylase conserved domain AMED_3018 PF00205 Thiamine pyrophosphate enzyme, central domain AMED_3018 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMED_3018 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMED_3020 PF00561 alpha/beta hydrolase fold AMED_3021 PF05726 Pirin C-terminal cupin domain AMED_3021 PF02678 Pirin AMED_3023 PF00436 Single-strand binding protein family AMED_3026 PF04075 F420H(2)-dependent quinone reductase AMED_3027 PF00905 Penicillin binding protein transpeptidase domain AMED_3027 PF00912 Transglycosylase AMED_3029 PF00005 ABC transporter AMED_3030 PF13732 Domain of unknown function (DUF4162) AMED_3030 PF00005 ABC transporter AMED_3033 PF08240 Alcohol dehydrogenase GroES-like domain AMED_3033 PF00107 Zinc-binding dehydrogenase AMED_3035 PF06983 3-demethylubiquinone-9 3-methyltransferase AMED_3037 PF07730 Histidine kinase AMED_3037 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_3037 PF13492 GAF domain AMED_3038 PF00135 Carboxylesterase family AMED_3039 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMED_3039 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMED_3040 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMED_3040 PF00941 FAD binding domain in molybdopterin dehydrogenase AMED_3041 PF00111 2Fe-2S iron-sulfur cluster binding domain AMED_3041 PF01799 [2Fe-2S] binding domain AMED_3041 PF10518 TAT (twin-arginine translocation) pathway signal sequence AMED_3044 PF00171 Aldehyde dehydrogenase family AMED_3046 PF00392 Bacterial regulatory proteins, gntR family AMED_3046 PF07702 UTRA domain AMED_3048 PF08240 Alcohol dehydrogenase GroES-like domain AMED_3048 PF13823 Alcohol dehydrogenase GroES-associated AMED_3048 PF00107 Zinc-binding dehydrogenase AMED_3051 PF13581 Histidine kinase-like ATPase domain AMED_3052 PF01740 STAS domain AMED_3053 PF08678 Rsbr N terminal AMED_3053 PF01740 STAS domain AMED_3057 PF00011 Hsp20/alpha crystallin family AMED_3059 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMED_3060 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMED_3060 PF00128 Alpha amylase, catalytic domain AMED_3061 PF05067 Manganese containing catalase AMED_3063 PF05368 NmrA-like family AMED_3064 PF01638 HxlR-like helix-turn-helix AMED_3070 PF00356 Bacterial regulatory proteins, lacI family AMED_3072 PF00528 Binding-protein-dependent transport system inner membrane component AMED_3073 PF00528 Binding-protein-dependent transport system inner membrane component AMED_3076 PF00440 Bacterial regulatory proteins, tetR family AMED_3077 PF00248 Aldo/keto reductase family AMED_3078 PF01965 DJ-1/PfpI family AMED_3078 PF12833 Helix-turn-helix domain AMED_3079 PF00248 Aldo/keto reductase family AMED_3081 PF08279 HTH domain AMED_3081 PF13280 WYL domain AMED_3083 PF00731 AIR carboxylase AMED_3084 PF09861 Lactate racemase N-terminal domain AMED_3085 PF04909 Amidohydrolase AMED_3086 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMED_3087 PF13378 Enolase C-terminal domain-like AMED_3087 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMED_3090 PF00005 ABC transporter AMED_3091 PF02653 Branched-chain amino acid transport system / permease component AMED_3092 PF00248 Aldo/keto reductase family AMED_3097 PF00356 Bacterial regulatory proteins, lacI family AMED_3098 PF00356 Bacterial regulatory proteins, lacI family AMED_3099 PF13193 AMP-binding enzyme C-terminal domain AMED_3099 PF00501 AMP-binding enzyme AMED_3100 PF00561 alpha/beta hydrolase fold AMED_3101 PF11774 Lsr2 AMED_3102 PF13193 AMP-binding enzyme C-terminal domain AMED_3102 PF00550 Phosphopantetheine attachment site AMED_3102 PF00501 AMP-binding enzyme AMED_3102 PF00668 Condensation domain AMED_3103 PF03621 MbtH-like protein AMED_3104 PF00144 Beta-lactamase AMED_3105 PF13193 AMP-binding enzyme C-terminal domain AMED_3105 PF00501 AMP-binding enzyme AMED_3105 PF00550 Phosphopantetheine attachment site AMED_3105 PF00668 Condensation domain AMED_3107 PF00067 Cytochrome P450 AMED_3112 PF00107 Zinc-binding dehydrogenase AMED_3112 PF08240 Alcohol dehydrogenase GroES-like domain AMED_3114 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AMED_3114 PF18416 N-acetylglucosamine binding protein domain 2 AMED_3115 PF12706 Beta-lactamase superfamily domain AMED_3120 PF03364 Polyketide cyclase / dehydrase and lipid transport AMED_3129 PF00378 Enoyl-CoA hydratase/isomerase AMED_3130 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 AMED_3130 PF00703 Glycosyl hydrolases family 2 AMED_3130 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMED_3130 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMED_3130 PF16355 Domain of unknown function (DUF4982) AMED_3132 PF00501 AMP-binding enzyme AMED_3132 PF13193 AMP-binding enzyme C-terminal domain AMED_3133 PF13193 AMP-binding enzyme C-terminal domain AMED_3133 PF00501 AMP-binding enzyme AMED_3134 PF02126 Phosphotriesterase family AMED_3135 PF00440 Bacterial regulatory proteins, tetR family AMED_3135 PF17922 Tetracyclin repressor-like, C-terminal domain AMED_3136 PF00561 alpha/beta hydrolase fold AMED_3138 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_3138 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_3138 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_3139 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_3139 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_3139 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_3140 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_3140 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_3140 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_3144 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMED_3144 PF13378 Enolase C-terminal domain-like AMED_3147 PF00528 Binding-protein-dependent transport system inner membrane component AMED_3148 PF03737 Aldolase/RraA AMED_3149 PF00069 Protein kinase domain AMED_3153 PF00196 Bacterial regulatory proteins, luxR family AMED_3153 PF00072 Response regulator receiver domain AMED_3156 PF07690 Major Facilitator Superfamily AMED_3158 PF00989 PAS fold AMED_3158 PF00512 His Kinase A (phospho-acceptor) domain AMED_3158 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_3158 PF16736 Single Cache-like AMED_3159 PF00486 Transcriptional regulatory protein, C terminal AMED_3159 PF00072 Response regulator receiver domain AMED_3162 PF00005 ABC transporter AMED_3166 PF08362 YcdC-like protein, C-terminal region AMED_3166 PF00440 Bacterial regulatory proteins, tetR family AMED_3171 PF03120 NAD-dependent DNA ligase OB-fold domain AMED_3171 PF01653 NAD-dependent DNA ligase adenylation domain AMED_3171 PF12826 Helix-hairpin-helix motif AMED_3172 PF00296 Luciferase-like monooxygenase AMED_3174 PF08281 Sigma-70, region 4 AMED_3174 PF04542 Sigma-70 region 2 AMED_3178 PF06441 Epoxide hydrolase N terminus AMED_3180 PF07690 Major Facilitator Superfamily AMED_3183 PF04542 Sigma-70 region 2 AMED_3183 PF12680 SnoaL-like domain AMED_3183 PF08281 Sigma-70, region 4 AMED_3187 PF03741 Integral membrane protein TerC family AMED_3189 PF00128 Alpha amylase, catalytic domain AMED_3191 PF01842 ACT domain AMED_3191 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMED_3191 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMED_3193 PF00528 Binding-protein-dependent transport system inner membrane component AMED_3196 PF00455 DeoR C terminal sensor domain AMED_3196 PF08220 DeoR-like helix-turn-helix domain AMED_3197 PF14032 PknH-like extracellular domain AMED_3197 PF00069 Protein kinase domain AMED_3198 PF00356 Bacterial regulatory proteins, lacI family AMED_3199 PF00069 Protein kinase domain AMED_3199 PF03793 PASTA domain AMED_3200 PF03793 PASTA domain AMED_3200 PF00069 Protein kinase domain AMED_3203 PF09163 Formate dehydrogenase N, transmembrane AMED_3203 PF12800 4Fe-4S binding domain AMED_3203 PF13247 4Fe-4S dicluster domain AMED_3206 PF00083 Sugar (and other) transporter AMED_3209 PF04978 Protein of unknown function (DUF664) AMED_3210 PF00891 O-methyltransferase domain AMED_3211 PF01381 Helix-turn-helix AMED_3214 PF00144 Beta-lactamase AMED_3215 PF00689 Cation transporting ATPase, C-terminus AMED_3217 PF00296 Luciferase-like monooxygenase AMED_3218 PF03466 LysR substrate binding domain AMED_3218 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_3220 PF00890 FAD binding domain AMED_3220 PF02910 Fumarate reductase flavoprotein C-term AMED_3221 PF13085 2Fe-2S iron-sulfur cluster binding domain AMED_3221 PF13183 4Fe-4S dicluster domain AMED_3228 PF05506 Domain of unknown function (DUF756) AMED_3228 PF04185 Phosphoesterase family AMED_3230 PF00891 O-methyltransferase domain AMED_3232 PF01266 FAD dependent oxidoreductase AMED_3234 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_3234 PF04324 BFD-like [2Fe-2S] binding domain AMED_3235 PF00701 Dihydrodipicolinate synthetase family AMED_3236 PF05544 Proline racemase AMED_3241 PF13649 Methyltransferase domain AMED_3242 PF00528 Binding-protein-dependent transport system inner membrane component AMED_3243 PF00528 Binding-protein-dependent transport system inner membrane component AMED_3253 PF01594 AI-2E family transporter AMED_3254 PF16369 C-terminal lipocalin-like domain AMED_3254 PF04616 Glycosyl hydrolases family 43 AMED_3255 PF04679 ATP dependent DNA ligase C terminal region AMED_3255 PF13298 DNA polymerase Ligase (LigD) AMED_3255 PF01068 ATP dependent DNA ligase domain AMED_3256 PF00440 Bacterial regulatory proteins, tetR family AMED_3256 PF16859 Tetracyclin repressor-like, C-terminal domain AMED_3258 PF01209 ubiE/COQ5 methyltransferase family AMED_3259 PF13419 Haloacid dehalogenase-like hydrolase AMED_3267 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMED_3267 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMED_3268 PF00501 AMP-binding enzyme AMED_3268 PF13193 AMP-binding enzyme C-terminal domain AMED_3269 PF00378 Enoyl-CoA hydratase/isomerase AMED_3270 PF13193 AMP-binding enzyme C-terminal domain AMED_3270 PF00501 AMP-binding enzyme AMED_3271 PF00107 Zinc-binding dehydrogenase AMED_3271 PF08240 Alcohol dehydrogenase GroES-like domain AMED_3272 PF00171 Aldehyde dehydrogenase family AMED_3276 PF13305 Tetracyclin repressor-like, C-terminal domain AMED_3276 PF00440 Bacterial regulatory proteins, tetR family AMED_3284 PF13193 AMP-binding enzyme C-terminal domain AMED_3284 PF00550 Phosphopantetheine attachment site AMED_3284 PF00501 AMP-binding enzyme AMED_3285 PF00553 Cellulose binding domain AMED_3285 PF00150 Cellulase (glycosyl hydrolase family 5) AMED_3286 PF04616 Glycosyl hydrolases family 43 AMED_3286 PF03422 Carbohydrate binding module (family 6) AMED_3287 PF00652 Ricin-type beta-trefoil lectin domain AMED_3287 PF00331 Glycosyl hydrolase family 10 AMED_3288 PF00553 Cellulose binding domain AMED_3288 PF01341 Glycosyl hydrolases family 6 AMED_3290 PF00652 Ricin-type beta-trefoil lectin domain AMED_3293 PF03664 Glycosyl hydrolase family 62 AMED_3293 PF00652 Ricin-type beta-trefoil lectin domain AMED_3296 PF00356 Bacterial regulatory proteins, lacI family AMED_3299 PF09995 Uncharacterized protein conserved in bacteria (DUF2236) AMED_3300 PF00440 Bacterial regulatory proteins, tetR family AMED_3301 PF04542 Sigma-70 region 2 AMED_3301 PF08281 Sigma-70, region 4 AMED_3304 PF00106 short chain dehydrogenase AMED_3305 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMED_3305 PF00205 Thiamine pyrophosphate enzyme, central domain AMED_3305 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMED_3307 PF06772 Bacterial low temperature requirement A protein (LtrA) AMED_3309 PF03259 Roadblock/LC7 domain AMED_3311 PF00563 EAL domain AMED_3311 PF03707 Bacterial signalling protein N terminal repeat AMED_3311 PF00990 Diguanylate cyclase, GGDEF domain AMED_3313 PF07702 UTRA domain AMED_3313 PF00392 Bacterial regulatory proteins, gntR family AMED_3314 PF02838 Glycosyl hydrolase family 20, domain 2 AMED_3314 PF00728 Glycosyl hydrolase family 20, catalytic domain AMED_3314 PF07691 PA14 domain AMED_3315 PF00528 Binding-protein-dependent transport system inner membrane component AMED_3316 PF00528 Binding-protein-dependent transport system inner membrane component AMED_3319 PF00585 C-terminal regulatory domain of Threonine dehydratase AMED_3319 PF00291 Pyridoxal-phosphate dependent enzyme AMED_3321 PF01451 Low molecular weight phosphotyrosine protein phosphatase AMED_3322 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_3322 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_3322 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_3323 PF00196 Bacterial regulatory proteins, luxR family AMED_3326 PF00072 Response regulator receiver domain AMED_3326 PF00990 Diguanylate cyclase, GGDEF domain AMED_3327 PF00356 Bacterial regulatory proteins, lacI family AMED_3334 PF13305 Tetracyclin repressor-like, C-terminal domain AMED_3334 PF00440 Bacterial regulatory proteins, tetR family AMED_3335 PF00089 Trypsin AMED_3336 PF00440 Bacterial regulatory proteins, tetR family AMED_3338 PF08281 Sigma-70, region 4 AMED_3338 PF04542 Sigma-70 region 2 AMED_3340 PF00925 GTP cyclohydrolase II AMED_3345 PF00440 Bacterial regulatory proteins, tetR family AMED_3345 PF16859 Tetracyclin repressor-like, C-terminal domain AMED_3347 PF08386 TAP-like protein AMED_3347 PF00561 alpha/beta hydrolase fold AMED_3350 PF00296 Luciferase-like monooxygenase AMED_3353 PF04607 Region found in RelA / SpoT proteins AMED_3354 PF00440 Bacterial regulatory proteins, tetR family AMED_3354 PF02909 Tetracyclin repressor-like, C-terminal domain AMED_3355 PF00067 Cytochrome P450 AMED_3358 PF01810 LysE type translocator AMED_3359 PF00684 DnaJ central domain AMED_3359 PF01556 DnaJ C terminal domain AMED_3359 PF00226 DnaJ domain AMED_3360 PF13193 AMP-binding enzyme C-terminal domain AMED_3360 PF00501 AMP-binding enzyme AMED_3363 PF01263 Aldose 1-epimerase AMED_3365 PF03176 MMPL family AMED_3366 PF07690 Major Facilitator Superfamily AMED_3367 PF00501 AMP-binding enzyme AMED_3368 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_3368 PF16197 Ketoacyl-synthetase C-terminal extension AMED_3368 PF00550 Phosphopantetheine attachment site AMED_3368 PF00698 Acyl transferase domain AMED_3368 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_3368 PF14765 Polyketide synthase dehydratase AMED_3368 PF08659 KR domain AMED_3369 PF01039 Carboxyl transferase domain AMED_3377 PF00378 Enoyl-CoA hydratase/isomerase AMED_3378 PF01144 Coenzyme A transferase AMED_3380 PF03060 Nitronate monooxygenase AMED_3381 PF00296 Luciferase-like monooxygenase AMED_3382 PF00108 Thiolase, N-terminal domain AMED_3382 PF02803 Thiolase, C-terminal domain AMED_3384 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_3384 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_3384 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_3385 PF00501 AMP-binding enzyme AMED_3385 PF13193 AMP-binding enzyme C-terminal domain AMED_3386 PF00378 Enoyl-CoA hydratase/isomerase AMED_3387 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_3387 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_3387 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_3388 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_3388 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_3388 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_3389 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_3389 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_3389 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_3392 PF00392 Bacterial regulatory proteins, gntR family AMED_3392 PF07729 FCD domain AMED_3393 PF01223 DNA/RNA non-specific endonuclease AMED_3396 PF00107 Zinc-binding dehydrogenase AMED_3396 PF08240 Alcohol dehydrogenase GroES-like domain AMED_3397 PF00561 alpha/beta hydrolase fold AMED_3398 PF00211 Adenylate and Guanylate cyclase catalytic domain AMED_3398 PF00672 HAMP domain AMED_3400 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_3400 PF00037 4Fe-4S binding domain AMED_3401 PF00440 Bacterial regulatory proteins, tetR family AMED_3402 PF04072 Leucine carboxyl methyltransferase AMED_3405 PF16499 Alpha galactosidase A AMED_3405 PF17801 Alpha galactosidase C-terminal beta sandwich domain AMED_3406 PF00356 Bacterial regulatory proteins, lacI family AMED_3407 PF13416 Bacterial extracellular solute-binding protein AMED_3408 PF00528 Binding-protein-dependent transport system inner membrane component AMED_3409 PF00528 Binding-protein-dependent transport system inner membrane component AMED_3410 PF07944 Beta-L-arabinofuranosidase, GH127 AMED_3414 PF02031 Streptomyces extracellular neutral proteinase (M7) family AMED_3415 PF00440 Bacterial regulatory proteins, tetR family AMED_3416 PF07690 Major Facilitator Superfamily AMED_3418 PF00480 ROK family AMED_3419 PF13520 Amino acid permease AMED_3420 PF16990 Carbohydrate binding module (family 35) AMED_3420 PF00703 Glycosyl hydrolases family 2 AMED_3420 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMED_3420 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain AMED_3421 PF00480 ROK family AMED_3423 PF00356 Bacterial regulatory proteins, lacI family AMED_3426 PF00067 Cytochrome P450 AMED_3432 PF00849 RNA pseudouridylate synthase AMED_3432 PF01479 S4 domain AMED_3434 PF01047 MarR family AMED_3435 PF00296 Luciferase-like monooxygenase AMED_3437 PF04226 Transglycosylase associated protein AMED_3438 PF00753 Metallo-beta-lactamase superfamily AMED_3445 PF13193 AMP-binding enzyme C-terminal domain AMED_3445 PF00501 AMP-binding enzyme AMED_3446 PF01975 Survival protein SurE AMED_3450 PF08240 Alcohol dehydrogenase GroES-like domain AMED_3451 PF01370 NAD dependent epimerase/dehydratase family AMED_3456 PF07969 Amidohydrolase family AMED_3459 PF13378 Enolase C-terminal domain-like AMED_3459 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMED_3460 PF00144 Beta-lactamase AMED_3463 PF00528 Binding-protein-dependent transport system inner membrane component AMED_3464 PF00005 ABC transporter AMED_3464 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMED_3465 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMED_3465 PF00005 ABC transporter AMED_3466 PF00144 Beta-lactamase AMED_3467 PF07690 Major Facilitator Superfamily AMED_3472 PF07690 Major Facilitator Superfamily AMED_3473 PF00067 Cytochrome P450 AMED_3474 PF00717 Peptidase S24-like AMED_3474 PF01726 LexA DNA binding domain AMED_3475 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AMED_3477 PF08240 Alcohol dehydrogenase GroES-like domain AMED_3477 PF14765 Polyketide synthase dehydratase AMED_3477 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_3477 PF16197 Ketoacyl-synthetase C-terminal extension AMED_3477 PF00698 Acyl transferase domain AMED_3477 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_3477 PF08659 KR domain AMED_3477 PF00550 Phosphopantetheine attachment site AMED_3478 PF03422 Carbohydrate binding module (family 6) AMED_3478 PF04616 Glycosyl hydrolases family 43 AMED_3481 PF01593 Flavin containing amine oxidoreductase AMED_3482 PF00294 pfkB family carbohydrate kinase AMED_3483 PF00596 Class II Aldolase and Adducin N-terminal domain AMED_3483 PF01008 Initiation factor 2 subunit family AMED_3485 PF00893 Small Multidrug Resistance protein AMED_3487 PF03773 Predicted permease AMED_3490 PF00196 Bacterial regulatory proteins, luxR family AMED_3494 PF00501 AMP-binding enzyme AMED_3494 PF13193 AMP-binding enzyme C-terminal domain AMED_3495 PF00296 Luciferase-like monooxygenase AMED_3498 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_3498 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_3501 PF01161 Phosphatidylethanolamine-binding protein AMED_3504 PF00107 Zinc-binding dehydrogenase AMED_3504 PF08240 Alcohol dehydrogenase GroES-like domain AMED_3505 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_3505 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMED_3507 PF00196 Bacterial regulatory proteins, luxR family AMED_3510 PF00403 Heavy-metal-associated domain AMED_3511 PF01435 Peptidase family M48 AMED_3517 PF01566 Natural resistance-associated macrophage protein AMED_3517 PF03358 NADPH-dependent FMN reductase AMED_3518 PF02254 TrkA-N domain AMED_3518 PF02080 TrkA-C domain AMED_3518 PF00999 Sodium/hydrogen exchanger family AMED_3524 PF01370 NAD dependent epimerase/dehydratase family AMED_3524 PF00391 PEP-utilising enzyme, mobile domain AMED_3525 PF00271 Helicase conserved C-terminal domain AMED_3525 PF00176 SNF2 family N-terminal domain AMED_3525 PF12419 SNF2 Helicase protein AMED_3526 PF04434 SWIM zinc finger AMED_3533 PF01494 FAD binding domain AMED_3539 PF01645 Conserved region in glutamate synthase AMED_3540 PF00486 Transcriptional regulatory protein, C terminal AMED_3540 PF00072 Response regulator receiver domain AMED_3541 PF00989 PAS fold AMED_3541 PF00512 His Kinase A (phospho-acceptor) domain AMED_3541 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_3541 PF16736 Single Cache-like AMED_3544 PF00005 ABC transporter AMED_3544 PF02687 FtsX-like permease family AMED_3544 PF12704 MacB-like periplasmic core domain AMED_3545 PF12704 MacB-like periplasmic core domain AMED_3545 PF00005 ABC transporter AMED_3545 PF02687 FtsX-like permease family AMED_3548 PF00083 Sugar (and other) transporter AMED_3549 PF00561 alpha/beta hydrolase fold AMED_3551 PF07730 Histidine kinase AMED_3552 PF00072 Response regulator receiver domain AMED_3552 PF00196 Bacterial regulatory proteins, luxR family AMED_3553 PF00144 Beta-lactamase AMED_3557 PF07730 Histidine kinase AMED_3563 PF12833 Helix-turn-helix domain AMED_3563 PF14525 AraC-binding-like domain AMED_3565 PF00106 short chain dehydrogenase AMED_3566 PF00106 short chain dehydrogenase AMED_3577 PF00067 Cytochrome P450 AMED_3581 PF00486 Transcriptional regulatory protein, C terminal AMED_3581 PF00072 Response regulator receiver domain AMED_3582 PF00672 HAMP domain AMED_3582 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_3582 PF00512 His Kinase A (phospho-acceptor) domain AMED_3586 PF01522 Polysaccharide deacetylase AMED_3591 PF08448 PAS fold AMED_3591 PF03705 CheR methyltransferase, all-alpha domain AMED_3591 PF01739 CheR methyltransferase, SAM binding domain AMED_3591 PF01339 CheB methylesterase AMED_3592 PF01339 CheB methylesterase AMED_3593 PF01494 FAD binding domain AMED_3600 PF00484 Carbonic anhydrase AMED_3604 PF07859 alpha/beta hydrolase fold AMED_3610 PF00106 short chain dehydrogenase AMED_3611 PF00400 WD domain, G-beta repeat AMED_3611 PF12894 Anaphase-promoting complex subunit 4 WD40 domain AMED_3614 PF09278 MerR, DNA binding AMED_3614 PF00376 MerR family regulatory protein AMED_3616 PF08281 Sigma-70, region 4 AMED_3616 PF04542 Sigma-70 region 2 AMED_3616 PF12680 SnoaL-like domain AMED_3620 PF01471 Putative peptidoglycan binding domain AMED_3620 PF08291 Peptidase M15 AMED_3622 PF00486 Transcriptional regulatory protein, C terminal AMED_3622 PF03704 Bacterial transcriptional activator domain AMED_3622 PF00931 NB-ARC domain AMED_3623 PF00072 Response regulator receiver domain AMED_3623 PF00196 Bacterial regulatory proteins, luxR family AMED_3624 PF01648 4'-phosphopantetheinyl transferase superfamily AMED_3625 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_3625 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_3625 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_3628 PF00550 Phosphopantetheine attachment site AMED_3629 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMED_3629 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMED_3633 PF00005 ABC transporter AMED_3633 PF13732 Domain of unknown function (DUF4162) AMED_3635 PF16861 Carbamoyltransferase C-terminus AMED_3635 PF02543 Carbamoyltransferase N-terminus AMED_3641 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMED_3641 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMED_3642 PF00941 FAD binding domain in molybdopterin dehydrogenase AMED_3642 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMED_3643 PF10518 TAT (twin-arginine translocation) pathway signal sequence AMED_3643 PF01799 [2Fe-2S] binding domain AMED_3643 PF00111 2Fe-2S iron-sulfur cluster binding domain AMED_3645 PF16499 Alpha galactosidase A AMED_3645 PF17801 Alpha galactosidase C-terminal beta sandwich domain AMED_3650 PF04075 F420H(2)-dependent quinone reductase AMED_3652 PF00440 Bacterial regulatory proteins, tetR family AMED_3656 PF00144 Beta-lactamase AMED_3659 PF03466 LysR substrate binding domain AMED_3659 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_3666 PF08240 Alcohol dehydrogenase GroES-like domain AMED_3666 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_3666 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_3666 PF08659 KR domain AMED_3666 PF00698 Acyl transferase domain AMED_3666 PF16197 Ketoacyl-synthetase C-terminal extension AMED_3666 PF14765 Polyketide synthase dehydratase AMED_3666 PF00550 Phosphopantetheine attachment site AMED_3666 PF08990 Erythronolide synthase docking AMED_3672 PF00561 alpha/beta hydrolase fold AMED_3673 PF03466 LysR substrate binding domain AMED_3673 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_3678 PF04616 Glycosyl hydrolases family 43 AMED_3681 PF00668 Condensation domain AMED_3681 PF00550 Phosphopantetheine attachment site AMED_3681 PF16197 Ketoacyl-synthetase C-terminal extension AMED_3681 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_3681 PF00698 Acyl transferase domain AMED_3681 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_3682 PF00550 Phosphopantetheine attachment site AMED_3682 PF00668 Condensation domain AMED_3682 PF13193 AMP-binding enzyme C-terminal domain AMED_3682 PF00501 AMP-binding enzyme AMED_3682 PF00975 Thioesterase domain AMED_3684 PF00668 Condensation domain AMED_3684 PF00501 AMP-binding enzyme AMED_3684 PF07993 Male sterility protein AMED_3684 PF13193 AMP-binding enzyme C-terminal domain AMED_3684 PF00550 Phosphopantetheine attachment site AMED_3685 PF00501 AMP-binding enzyme AMED_3685 PF00550 Phosphopantetheine attachment site AMED_3685 PF13193 AMP-binding enzyme C-terminal domain AMED_3685 PF00668 Condensation domain AMED_3690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_3690 PF00512 His Kinase A (phospho-acceptor) domain AMED_3690 PF00672 HAMP domain AMED_3691 PF00486 Transcriptional regulatory protein, C terminal AMED_3691 PF00072 Response regulator receiver domain AMED_3693 PF00196 Bacterial regulatory proteins, luxR family AMED_3693 PF00072 Response regulator receiver domain AMED_3694 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_3694 PF07730 Histidine kinase AMED_3694 PF05231 MASE1 AMED_3697 PF01494 FAD binding domain AMED_3700 PF00872 Transposase, Mutator family AMED_3704 PF00440 Bacterial regulatory proteins, tetR family AMED_3706 PF01037 Lrp/AsnC ligand binding domain AMED_3708 PF08240 Alcohol dehydrogenase GroES-like domain AMED_3708 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_3708 PF00550 Phosphopantetheine attachment site AMED_3708 PF08659 KR domain AMED_3708 PF16197 Ketoacyl-synthetase C-terminal extension AMED_3708 PF00698 Acyl transferase domain AMED_3708 PF14765 Polyketide synthase dehydratase AMED_3708 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_3709 PF07859 alpha/beta hydrolase fold AMED_3712 PF02929 Beta galactosidase small chain AMED_3712 PF16353 Domain of unknown function(DUF4981) AMED_3712 PF00703 Glycosyl hydrolases family 2 AMED_3712 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMED_3712 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMED_3713 PF00704 Glycosyl hydrolases family 18 AMED_3713 PF00041 Fibronectin type III domain AMED_3717 PF07690 Major Facilitator Superfamily AMED_3719 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMED_3719 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMED_3721 PF00941 FAD binding domain in molybdopterin dehydrogenase AMED_3721 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMED_3722 PF01799 [2Fe-2S] binding domain AMED_3722 PF10518 TAT (twin-arginine translocation) pathway signal sequence AMED_3722 PF00111 2Fe-2S iron-sulfur cluster binding domain AMED_3723 PF07690 Major Facilitator Superfamily AMED_3724 PF08240 Alcohol dehydrogenase GroES-like domain AMED_3724 PF13823 Alcohol dehydrogenase GroES-associated AMED_3724 PF00107 Zinc-binding dehydrogenase AMED_3734 PF01183 Glycosyl hydrolases family 25 AMED_3737 PF03600 Citrate transporter AMED_3738 PF10503 Esterase PHB depolymerase AMED_3740 PF00480 ROK family AMED_3740 PF01047 MarR family AMED_3741 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMED_3742 PF00528 Binding-protein-dependent transport system inner membrane component AMED_3743 PF00005 ABC transporter AMED_3743 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMED_3744 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMED_3744 PF00005 ABC transporter AMED_3746 PF00356 Bacterial regulatory proteins, lacI family AMED_3747 PF02156 Glycosyl hydrolase family 26 AMED_3749 PF00480 ROK family AMED_3750 PF16875 Glycosyl hydrolase family 36 N-terminal domain AMED_3750 PF16874 Glycosyl hydrolase family 36 C-terminal domain AMED_3751 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_3751 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AMED_3752 PF12833 Helix-turn-helix domain AMED_3752 PF12852 Cupin AMED_3754 PF01494 FAD binding domain AMED_3764 PF03330 Lytic transglycolase AMED_3766 PF00486 Transcriptional regulatory protein, C terminal AMED_3766 PF00072 Response regulator receiver domain AMED_3767 PF00512 His Kinase A (phospho-acceptor) domain AMED_3767 PF00672 HAMP domain AMED_3767 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_3769 PF01757 Acyltransferase family AMED_3774 PF00561 alpha/beta hydrolase fold AMED_3774 PF08386 TAP-like protein AMED_3775 PF08241 Methyltransferase domain AMED_3777 PF01022 Bacterial regulatory protein, arsR family AMED_3781 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AMED_3781 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal AMED_3784 PF17788 HypF Kae1-like domain AMED_3784 PF01300 Telomere recombination AMED_3784 PF00708 Acylphosphatase AMED_3784 PF07503 HypF finger AMED_3785 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMED_3786 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AMED_3787 PF02769 AIR synthase related protein, C-terminal domain AMED_3787 PF00586 AIR synthase related protein, N-terminal domain AMED_3788 PF01924 Hydrogenase formation hypA family AMED_3789 PF01455 HupF/HypC family AMED_3795 PF00374 Nickel-dependent hydrogenase AMED_3796 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AMED_3796 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal AMED_3797 PF13580 SIS domain AMED_3799 PF13580 SIS domain AMED_3806 PF03704 Bacterial transcriptional activator domain AMED_3806 PF00931 NB-ARC domain AMED_3806 PF00486 Transcriptional regulatory protein, C terminal AMED_3807 PF00561 alpha/beta hydrolase fold AMED_3808 PF00378 Enoyl-CoA hydratase/isomerase AMED_3808 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMED_3808 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMED_3809 PF01638 HxlR-like helix-turn-helix AMED_3813 PF00440 Bacterial regulatory proteins, tetR family AMED_3814 PF00698 Acyl transferase domain AMED_3814 PF00550 Phosphopantetheine attachment site AMED_3814 PF08659 KR domain AMED_3814 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_3814 PF16197 Ketoacyl-synthetase C-terminal extension AMED_3814 PF14765 Polyketide synthase dehydratase AMED_3814 PF08240 Alcohol dehydrogenase GroES-like domain AMED_3814 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_3816 PF00296 Luciferase-like monooxygenase AMED_3824 PF00005 ABC transporter AMED_3824 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMED_3825 PF00005 ABC transporter AMED_3826 PF00378 Enoyl-CoA hydratase/isomerase AMED_3827 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_3827 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_3827 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_3828 PF00501 AMP-binding enzyme AMED_3828 PF13193 AMP-binding enzyme C-terminal domain AMED_3829 PF02551 Acyl-CoA thioesterase AMED_3831 PF00378 Enoyl-CoA hydratase/isomerase AMED_3832 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_3832 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_3832 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_3833 PF00171 Aldehyde dehydrogenase family AMED_3835 PF02515 CoA-transferase family III AMED_3836 PF00108 Thiolase, N-terminal domain AMED_3836 PF02803 Thiolase, C-terminal domain AMED_3837 PF03060 Nitronate monooxygenase AMED_3838 PF00753 Metallo-beta-lactamase superfamily AMED_3839 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMED_3839 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMED_3840 PF00171 Aldehyde dehydrogenase family AMED_3848 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_3848 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_3848 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_3852 PF00108 Thiolase, N-terminal domain AMED_3852 PF02803 Thiolase, C-terminal domain AMED_3853 PF00106 short chain dehydrogenase AMED_3855 PF00108 Thiolase, N-terminal domain AMED_3855 PF02803 Thiolase, C-terminal domain AMED_3856 PF00378 Enoyl-CoA hydratase/isomerase AMED_3858 PF00232 Glycosyl hydrolase family 1 AMED_3859 PF00106 short chain dehydrogenase AMED_3862 PF00378 Enoyl-CoA hydratase/isomerase AMED_3863 PF00378 Enoyl-CoA hydratase/isomerase AMED_3864 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_3864 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_3864 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_3865 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_3865 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_3865 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_3866 PF00501 AMP-binding enzyme AMED_3866 PF13193 AMP-binding enzyme C-terminal domain AMED_3870 PF00392 Bacterial regulatory proteins, gntR family AMED_3870 PF07729 FCD domain AMED_3871 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_3871 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_3871 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_3874 PF05893 Acyl-CoA reductase (LuxC) AMED_3875 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_3875 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_3875 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_3876 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_3876 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_3876 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_3877 PF00378 Enoyl-CoA hydratase/isomerase AMED_3878 PF00392 Bacterial regulatory proteins, gntR family AMED_3878 PF07702 UTRA domain AMED_3879 PF00106 short chain dehydrogenase AMED_3880 PF00809 Pterin binding enzyme AMED_3881 PF13193 AMP-binding enzyme C-terminal domain AMED_3881 PF00501 AMP-binding enzyme AMED_3884 PF12697 Alpha/beta hydrolase family AMED_3886 PF00440 Bacterial regulatory proteins, tetR family AMED_3887 PF00890 FAD binding domain AMED_3888 PF02585 GlcNAc-PI de-N-acetylase AMED_3889 PF03704 Bacterial transcriptional activator domain AMED_3889 PF00931 NB-ARC domain AMED_3889 PF00486 Transcriptional regulatory protein, C terminal AMED_3893 PF00042 Globin AMED_3893 PF00175 Oxidoreductase NAD-binding domain AMED_3893 PF00970 Oxidoreductase FAD-binding domain AMED_3894 PF00480 ROK family AMED_3895 PF07350 Protein of unknown function (DUF1479) AMED_3897 PF07687 Peptidase dimerisation domain AMED_3897 PF01546 Peptidase family M20/M25/M40 AMED_3899 PF13520 Amino acid permease AMED_3900 PF00723 Glycosyl hydrolases family 15 AMED_3901 PF07690 Major Facilitator Superfamily AMED_3903 PF00072 Response regulator receiver domain AMED_3903 PF00196 Bacterial regulatory proteins, luxR family AMED_3909 PF13191 AAA ATPase domain AMED_3909 PF00069 Protein kinase domain AMED_3910 PF01594 AI-2E family transporter AMED_3912 PF07995 Glucose / Sorbosone dehydrogenase AMED_3913 PF02056 Family 4 glycosyl hydrolase AMED_3913 PF11975 Family 4 glycosyl hydrolase C-terminal domain AMED_3914 PF00528 Binding-protein-dependent transport system inner membrane component AMED_3915 PF00528 Binding-protein-dependent transport system inner membrane component AMED_3918 PF08220 DeoR-like helix-turn-helix domain AMED_3918 PF00455 DeoR C terminal sensor domain AMED_3919 PF01380 SIS domain AMED_3922 PF00294 pfkB family carbohydrate kinase AMED_3923 PF01116 Fructose-bisphosphate aldolase class-II AMED_3926 PF08659 KR domain AMED_3926 PF16197 Ketoacyl-synthetase C-terminal extension AMED_3926 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_3926 PF14765 Polyketide synthase dehydratase AMED_3926 PF00550 Phosphopantetheine attachment site AMED_3926 PF00698 Acyl transferase domain AMED_3926 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_3927 PF00067 Cytochrome P450 AMED_3929 PF00550 Phosphopantetheine attachment site AMED_3929 PF16197 Ketoacyl-synthetase C-terminal extension AMED_3929 PF00698 Acyl transferase domain AMED_3929 PF09277 Erythronolide synthase, docking AMED_3929 PF14765 Polyketide synthase dehydratase AMED_3929 PF08240 Alcohol dehydrogenase GroES-like domain AMED_3929 PF08990 Erythronolide synthase docking AMED_3929 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_3929 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_3929 PF08659 KR domain AMED_3930 PF08281 Sigma-70, region 4 AMED_3930 PF04542 Sigma-70 region 2 AMED_3930 PF12680 SnoaL-like domain AMED_3931 PF00759 Glycosyl hydrolase family 9 AMED_3931 PF00041 Fibronectin type III domain AMED_3931 PF00942 Cellulose binding domain AMED_3931 PF00553 Cellulose binding domain AMED_3935 PF06441 Epoxide hydrolase N terminus AMED_3937 PF02911 Formyl transferase, C-terminal domain AMED_3937 PF00551 Formyl transferase AMED_3937 PF00378 Enoyl-CoA hydratase/isomerase AMED_3938 PF03704 Bacterial transcriptional activator domain AMED_3938 PF00931 NB-ARC domain AMED_3938 PF00486 Transcriptional regulatory protein, C terminal AMED_3940 PF00005 ABC transporter AMED_3940 PF00664 ABC transporter transmembrane region AMED_3945 PF00376 MerR family regulatory protein AMED_3945 PF09278 MerR, DNA binding AMED_3946 PF13193 AMP-binding enzyme C-terminal domain AMED_3946 PF00501 AMP-binding enzyme AMED_3950 PF00106 short chain dehydrogenase AMED_3951 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMED_3951 PF13378 Enolase C-terminal domain-like AMED_3952 PF00528 Binding-protein-dependent transport system inner membrane component AMED_3953 PF00528 Binding-protein-dependent transport system inner membrane component AMED_3954 PF01547 Bacterial extracellular solute-binding protein AMED_3955 PF00392 Bacterial regulatory proteins, gntR family AMED_3955 PF07729 FCD domain AMED_3957 PF03033 Glycosyltransferase family 28 N-terminal domain AMED_3960 PF00067 Cytochrome P450 AMED_3961 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AMED_3962 PF13193 AMP-binding enzyme C-terminal domain AMED_3962 PF00668 Condensation domain AMED_3962 PF16197 Ketoacyl-synthetase C-terminal extension AMED_3962 PF00501 AMP-binding enzyme AMED_3962 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_3962 PF00550 Phosphopantetheine attachment site AMED_3962 PF14765 Polyketide synthase dehydratase AMED_3962 PF08659 KR domain AMED_3962 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_3963 PF00668 Condensation domain AMED_3963 PF00550 Phosphopantetheine attachment site AMED_3963 PF13193 AMP-binding enzyme C-terminal domain AMED_3963 PF00501 AMP-binding enzyme AMED_3963 PF00975 Thioesterase domain AMED_3965 PF00440 Bacterial regulatory proteins, tetR family AMED_3971 PF01494 FAD binding domain AMED_3973 PF00480 ROK family AMED_3973 PF01325 Iron dependent repressor, N-terminal DNA binding domain AMED_3974 PF00480 ROK family AMED_3974 PF01047 MarR family AMED_3975 PF00005 ABC transporter AMED_3976 PF02653 Branched-chain amino acid transport system / permease component AMED_3978 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMED_3978 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMED_3980 PF08240 Alcohol dehydrogenase GroES-like domain AMED_3980 PF00107 Zinc-binding dehydrogenase AMED_3981 PF00440 Bacterial regulatory proteins, tetR family AMED_3990 PF16859 Tetracyclin repressor-like, C-terminal domain AMED_3990 PF00440 Bacterial regulatory proteins, tetR family AMED_3992 PF00553 Cellulose binding domain AMED_3992 PF01341 Glycosyl hydrolases family 6 AMED_3993 PF00331 Glycosyl hydrolase family 10 AMED_3993 PF00652 Ricin-type beta-trefoil lectin domain AMED_3994 PF00652 Ricin-type beta-trefoil lectin domain AMED_3994 PF16483 Beta-1,3-glucanase AMED_3995 PF00331 Glycosyl hydrolase family 10 AMED_3995 PF00652 Ricin-type beta-trefoil lectin domain AMED_3996 PF00107 Zinc-binding dehydrogenase AMED_3996 PF08240 Alcohol dehydrogenase GroES-like domain AMED_3997 PF00440 Bacterial regulatory proteins, tetR family AMED_3997 PF17926 Tetracyclin repressor-like, C-terminal domain AMED_3998 PF00501 AMP-binding enzyme AMED_3998 PF13193 AMP-binding enzyme C-terminal domain AMED_3999 PF07730 Histidine kinase AMED_3999 PF13492 GAF domain AMED_3999 PF13185 GAF domain AMED_3999 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_4000 PF00083 Sugar (and other) transporter AMED_4001 PF07519 Tannase and feruloyl esterase AMED_4002 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMED_4002 PF00933 Glycosyl hydrolase family 3 N terminal domain AMED_4002 PF14310 Fibronectin type III-like domain AMED_4005 PF00331 Glycosyl hydrolase family 10 AMED_4005 PF00652 Ricin-type beta-trefoil lectin domain AMED_4006 PF13556 PucR C-terminal helix-turn-helix domain AMED_4006 PF07905 Purine catabolism regulatory protein-like family AMED_4006 PF17853 GGDEF-like domain AMED_4007 PF00550 Phosphopantetheine attachment site AMED_4008 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_4008 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_4009 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMED_4009 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMED_4010 PF00535 Glycosyl transferase family 2 AMED_4011 PF00067 Cytochrome P450 AMED_4012 PF13193 AMP-binding enzyme C-terminal domain AMED_4012 PF00501 AMP-binding enzyme AMED_4014 PF03704 Bacterial transcriptional activator domain AMED_4014 PF00486 Transcriptional regulatory protein, C terminal AMED_4015 PF03466 LysR substrate binding domain AMED_4015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_4020 PF01047 MarR family AMED_4021 PF00931 NB-ARC domain AMED_4021 PF03704 Bacterial transcriptional activator domain AMED_4021 PF00486 Transcriptional regulatory protein, C terminal AMED_4022 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMED_4022 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMED_4023 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMED_4023 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMED_4025 PF00196 Bacterial regulatory proteins, luxR family AMED_4025 PF00072 Response regulator receiver domain AMED_4027 PF02687 FtsX-like permease family AMED_4027 PF12704 MacB-like periplasmic core domain AMED_4027 PF00005 ABC transporter AMED_4033 PF00291 Pyridoxal-phosphate dependent enzyme AMED_4034 PF00668 Condensation domain AMED_4034 PF00550 Phosphopantetheine attachment site AMED_4034 PF00668 Condensation domain AMED_4034 PF00501 AMP-binding enzyme AMED_4034 PF13193 AMP-binding enzyme C-terminal domain AMED_4034 PF00501 AMP-binding enzyme AMED_4034 PF00550 Phosphopantetheine attachment site AMED_4034 PF13193 AMP-binding enzyme C-terminal domain AMED_4036 PF03621 MbtH-like protein AMED_4037 PF00005 ABC transporter AMED_4037 PF13732 Domain of unknown function (DUF4162) AMED_4039 PF00291 Pyridoxal-phosphate dependent enzyme AMED_4041 PF02655 ATP-grasp domain AMED_4044 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_4044 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_4045 PF00550 Phosphopantetheine attachment site AMED_4046 PF00486 Transcriptional regulatory protein, C terminal AMED_4046 PF00931 NB-ARC domain AMED_4046 PF03704 Bacterial transcriptional activator domain AMED_4047 PF00137 ATP synthase subunit C AMED_4051 PF10503 Esterase PHB depolymerase AMED_4052 PF00512 His Kinase A (phospho-acceptor) domain AMED_4052 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_4052 PF00672 HAMP domain AMED_4053 PF00072 Response regulator receiver domain AMED_4053 PF00486 Transcriptional regulatory protein, C terminal AMED_4054 PF00144 Beta-lactamase AMED_4055 PF00459 Inositol monophosphatase family AMED_4056 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_4056 PF03466 LysR substrate binding domain AMED_4059 PF00083 Sugar (and other) transporter AMED_4061 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMED_4061 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMED_4063 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_4063 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_4063 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_4065 PF00668 Condensation domain AMED_4065 PF13193 AMP-binding enzyme C-terminal domain AMED_4065 PF00501 AMP-binding enzyme AMED_4065 PF00550 Phosphopantetheine attachment site AMED_4065 PF00550 Phosphopantetheine attachment site AMED_4065 PF00668 Condensation domain AMED_4065 PF13193 AMP-binding enzyme C-terminal domain AMED_4065 PF00501 AMP-binding enzyme AMED_4066 PF00550 Phosphopantetheine attachment site AMED_4066 PF00501 AMP-binding enzyme AMED_4066 PF13193 AMP-binding enzyme C-terminal domain AMED_4066 PF00550 Phosphopantetheine attachment site AMED_4066 PF00668 Condensation domain AMED_4066 PF13193 AMP-binding enzyme C-terminal domain AMED_4066 PF00501 AMP-binding enzyme AMED_4066 PF00668 Condensation domain AMED_4067 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMED_4067 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMED_4069 PF01593 Flavin containing amine oxidoreductase AMED_4070 PF01593 Flavin containing amine oxidoreductase AMED_4071 PF01209 ubiE/COQ5 methyltransferase family AMED_4075 PF01593 Flavin containing amine oxidoreductase AMED_4079 PF01593 Flavin containing amine oxidoreductase AMED_4085 PF00528 Binding-protein-dependent transport system inner membrane component AMED_4086 PF00528 Binding-protein-dependent transport system inner membrane component AMED_4088 PF00356 Bacterial regulatory proteins, lacI family AMED_4092 PF00041 Fibronectin type III domain AMED_4092 PF00553 Cellulose binding domain AMED_4092 PF00704 Glycosyl hydrolases family 18 AMED_4094 PF07516 SecA Wing and Scaffold domain AMED_4094 PF02810 SEC-C motif AMED_4094 PF01043 SecA preprotein cross-linking domain AMED_4094 PF07517 SecA DEAD-like domain AMED_4097 PF00150 Cellulase (glycosyl hydrolase family 5) AMED_4097 PF00553 Cellulose binding domain AMED_4101 PF00561 alpha/beta hydrolase fold AMED_4103 PF00296 Luciferase-like monooxygenase AMED_4105 PF00141 Peroxidase AMED_4106 PF01475 Ferric uptake regulator family AMED_4107 PF00303 Thymidylate synthase AMED_4108 PF00186 Dihydrofolate reductase AMED_4109 PF05199 GMC oxidoreductase AMED_4109 PF00732 GMC oxidoreductase AMED_4110 PF00171 Aldehyde dehydrogenase family AMED_4111 PF13091 PLD-like domain AMED_4115 PF00355 Rieske [2Fe-2S] domain AMED_4117 PF03405 Fatty acid desaturase AMED_4118 PF07477 Glycosyl hydrolase family 67 C-terminus AMED_4118 PF07488 Glycosyl hydrolase family 67 middle domain AMED_4118 PF03648 Glycosyl hydrolase family 67 N-terminus AMED_4121 PF00106 short chain dehydrogenase AMED_4130 PF00072 Response regulator receiver domain AMED_4130 PF01339 CheB methylesterase AMED_4131 PF01339 CheB methylesterase AMED_4131 PF00072 Response regulator receiver domain AMED_4133 PF08448 PAS fold AMED_4133 PF01339 CheB methylesterase AMED_4133 PF01739 CheR methyltransferase, SAM binding domain AMED_4133 PF03705 CheR methyltransferase, all-alpha domain AMED_4135 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMED_4144 PF07690 Major Facilitator Superfamily AMED_4147 PF04978 Protein of unknown function (DUF664) AMED_4148 PF04679 ATP dependent DNA ligase C terminal region AMED_4148 PF01068 ATP dependent DNA ligase domain AMED_4153 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMED_4153 PF07683 Cobalamin synthesis protein cobW C-terminal domain AMED_4154 PF02898 Nitric oxide synthase, oxygenase domain AMED_4156 PF07690 Major Facilitator Superfamily AMED_4158 PF03601 Conserved hypothetical protein 698 AMED_4159 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_4159 PF03466 LysR substrate binding domain AMED_4160 PF03466 LysR substrate binding domain AMED_4160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_4164 PF00246 Zinc carboxypeptidase AMED_4166 PF02785 Biotin carboxylase C-terminal domain AMED_4166 PF00289 Biotin carboxylase, N-terminal domain AMED_4166 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMED_4173 PF00155 Aminotransferase class I and II AMED_4173 PF00392 Bacterial regulatory proteins, gntR family AMED_4174 PF07690 Major Facilitator Superfamily AMED_4176 PF02577 Bifunctional nuclease AMED_4177 PF08281 Sigma-70, region 4 AMED_4177 PF12680 SnoaL-like domain AMED_4177 PF04542 Sigma-70 region 2 AMED_4179 PF00501 AMP-binding enzyme AMED_4184 PF05958 tRNA (Uracil-5-)-methyltransferase AMED_4184 PF01938 TRAM domain AMED_4189 PF13298 DNA polymerase Ligase (LigD) AMED_4189 PF01068 ATP dependent DNA ligase domain AMED_4189 PF04679 ATP dependent DNA ligase C terminal region AMED_4190 PF00294 pfkB family carbohydrate kinase AMED_4191 PF00270 DEAD/DEAH box helicase AMED_4191 PF16124 RecQ zinc-binding AMED_4191 PF00570 HRDC domain AMED_4191 PF09382 RQC domain AMED_4191 PF00271 Helicase conserved C-terminal domain AMED_4197 PF01068 ATP dependent DNA ligase domain AMED_4197 PF04679 ATP dependent DNA ligase C terminal region AMED_4197 PF13298 DNA polymerase Ligase (LigD) AMED_4201 PF16859 Tetracyclin repressor-like, C-terminal domain AMED_4201 PF00440 Bacterial regulatory proteins, tetR family AMED_4203 PF12146 Serine aminopeptidase, S33 AMED_4209 PF02146 Sir2 family AMED_4212 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_4212 PF13192 Thioredoxin domain AMED_4213 PF01381 Helix-turn-helix AMED_4216 PF00009 Elongation factor Tu GTP binding domain AMED_4216 PF03143 Elongation factor Tu C-terminal domain AMED_4216 PF03144 Elongation factor Tu domain 2 AMED_4219 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMED_4219 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation AMED_4220 PF07836 DmpG-like communication domain AMED_4220 PF00682 HMGL-like AMED_4222 PF01494 FAD binding domain AMED_4223 PF00440 Bacterial regulatory proteins, tetR family AMED_4223 PF17754 MftR C-terminal domain AMED_4225 PF01425 Amidase AMED_4226 PF00144 Beta-lactamase AMED_4228 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AMED_4228 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMED_4230 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA AMED_4231 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AMED_4231 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMED_4232 PF04542 Sigma-70 region 2 AMED_4232 PF04545 Sigma-70, region 4 AMED_4233 PF17827 PrmC N-terminal domain AMED_4233 PF13649 Methyltransferase domain AMED_4236 PF01037 Lrp/AsnC ligand binding domain AMED_4237 PF00202 Aminotransferase class-III AMED_4238 PF00067 Cytochrome P450 AMED_4240 PF01339 CheB methylesterase AMED_4240 PF00072 Response regulator receiver domain AMED_4244 PF03793 PASTA domain AMED_4244 PF00069 Protein kinase domain AMED_4246 PF00183 Hsp90 protein AMED_4248 PF00127 Copper binding proteins, plastocyanin/azurin family AMED_4255 PF00156 Phosphoribosyl transferase domain AMED_4255 PF05139 Erythromycin esterase AMED_4265 PF00171 Aldehyde dehydrogenase family AMED_4269 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMED_4269 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMED_4269 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMED_4271 PF00106 short chain dehydrogenase AMED_4272 PF00294 pfkB family carbohydrate kinase AMED_4272 PF01467 Cytidylyltransferase-like AMED_4273 PF13580 SIS domain AMED_4274 PF02543 Carbamoyltransferase N-terminus AMED_4274 PF16861 Carbamoyltransferase C-terminus AMED_4275 PF01370 NAD dependent epimerase/dehydratase family AMED_4278 PF00535 Glycosyl transferase family 2 AMED_4278 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase AMED_4279 PF00534 Glycosyl transferases group 1 AMED_4279 PF13439 Glycosyltransferase Family 4 AMED_4282 PF01384 Phosphate transporter family AMED_4283 PF00107 Zinc-binding dehydrogenase AMED_4283 PF13823 Alcohol dehydrogenase GroES-associated AMED_4283 PF08240 Alcohol dehydrogenase GroES-like domain AMED_4284 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMED_4284 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AMED_4284 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal AMED_4288 PF03631 Virulence factor BrkB AMED_4293 PF00355 Rieske [2Fe-2S] domain AMED_4293 PF01266 FAD dependent oxidoreductase AMED_4294 PF02142 MGS-like domain AMED_4294 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMED_4294 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AMED_4296 PF17827 PrmC N-terminal domain AMED_4296 PF05175 Methyltransferase small domain AMED_4299 PF04107 Glutamate-cysteine ligase family 2(GCS2) AMED_4301 PF04107 Glutamate-cysteine ligase family 2(GCS2) AMED_4303 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AMED_4303 PF01276 Orn/Lys/Arg decarboxylase, major domain AMED_4305 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AMED_4306 PF00296 Luciferase-like monooxygenase AMED_4307 PF00528 Binding-protein-dependent transport system inner membrane component AMED_4308 PF00005 ABC transporter AMED_4312 PF06441 Epoxide hydrolase N terminus AMED_4314 PF00196 Bacterial regulatory proteins, luxR family AMED_4315 PF01494 FAD binding domain AMED_4316 PF01230 HIT domain AMED_4317 PF13556 PucR C-terminal helix-turn-helix domain AMED_4317 PF17853 GGDEF-like domain AMED_4317 PF05651 Putative sugar diacid recognition AMED_4322 PF02954 Bacterial regulatory protein, Fis family AMED_4324 PF02332 Methane/Phenol/Toluene Hydroxylase AMED_4325 PF00175 Oxidoreductase NAD-binding domain AMED_4325 PF00970 Oxidoreductase FAD-binding domain AMED_4325 PF00111 2Fe-2S iron-sulfur cluster binding domain AMED_4326 PF02332 Methane/Phenol/Toluene Hydroxylase AMED_4327 PF02406 MmoB/DmpM family AMED_4331 PF00118 TCP-1/cpn60 chaperonin family AMED_4333 PF00486 Transcriptional regulatory protein, C terminal AMED_4333 PF03704 Bacterial transcriptional activator domain AMED_4333 PF00931 NB-ARC domain AMED_4335 PF00440 Bacterial regulatory proteins, tetR family AMED_4336 PF06441 Epoxide hydrolase N terminus AMED_4338 PF13409 Glutathione S-transferase, N-terminal domain AMED_4340 PF04264 YceI-like domain AMED_4341 PF00440 Bacterial regulatory proteins, tetR family AMED_4344 PF00528 Binding-protein-dependent transport system inner membrane component AMED_4347 PF00356 Bacterial regulatory proteins, lacI family AMED_4348 PF07691 PA14 domain AMED_4348 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMED_4348 PF00933 Glycosyl hydrolase family 3 N terminal domain AMED_4348 PF14310 Fibronectin type III-like domain AMED_4350 PF00067 Cytochrome P450 AMED_4352 PF00990 Diguanylate cyclase, GGDEF domain AMED_4352 PF00563 EAL domain AMED_4352 PF00498 FHA domain AMED_4355 PF02754 Cysteine-rich domain AMED_4355 PF02665 Nitrate reductase gamma subunit AMED_4355 PF13183 4Fe-4S dicluster domain AMED_4356 PF12401 Protein of unknown function (DUF2662) AMED_4356 PF00498 FHA domain AMED_4358 PF07690 Major Facilitator Superfamily AMED_4358 PF00083 Sugar (and other) transporter AMED_4360 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AMED_4360 PF08501 Shikimate dehydrogenase substrate binding domain AMED_4364 PF00528 Binding-protein-dependent transport system inner membrane component AMED_4365 PF00933 Glycosyl hydrolase family 3 N terminal domain AMED_4376 PF08281 Sigma-70, region 4 AMED_4376 PF04542 Sigma-70 region 2 AMED_4378 PF13492 GAF domain AMED_4378 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_4378 PF07730 Histidine kinase AMED_4378 PF13185 GAF domain AMED_4379 PF00196 Bacterial regulatory proteins, luxR family AMED_4379 PF00072 Response regulator receiver domain AMED_4383 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_4383 PF14759 Reductase C-terminal AMED_4384 PF01227 GTP cyclohydrolase I AMED_4387 PF00356 Bacterial regulatory proteins, lacI family AMED_4391 PF00106 short chain dehydrogenase AMED_4392 PF00041 Fibronectin type III domain AMED_4392 PF00704 Glycosyl hydrolases family 18 AMED_4392 PF00553 Cellulose binding domain AMED_4394 PF00768 D-alanyl-D-alanine carboxypeptidase AMED_4394 PF07943 Penicillin-binding protein 5, C-terminal domain AMED_4396 PF00356 Bacterial regulatory proteins, lacI family AMED_4397 PF13407 Periplasmic binding protein domain AMED_4398 PF00005 ABC transporter AMED_4399 PF02653 Branched-chain amino acid transport system / permease component AMED_4400 PF02653 Branched-chain amino acid transport system / permease component AMED_4401 PF06964 Alpha-L-arabinofuranosidase C-terminal domain AMED_4401 PF02018 Carbohydrate binding domain AMED_4402 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMED_4402 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMED_4403 PF00596 Class II Aldolase and Adducin N-terminal domain AMED_4404 PF11762 L-arabinose isomerase C-terminal domain AMED_4404 PF02610 L-arabinose isomerase AMED_4405 PF13407 Periplasmic binding protein domain AMED_4406 PF00005 ABC transporter AMED_4407 PF02653 Branched-chain amino acid transport system / permease component AMED_4409 PF00356 Bacterial regulatory proteins, lacI family AMED_4410 PF00067 Cytochrome P450 AMED_4411 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMED_4411 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMED_4412 PF01614 Bacterial transcriptional regulator AMED_4412 PF09339 IclR helix-turn-helix domain AMED_4413 PF00230 Major intrinsic protein AMED_4414 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMED_4414 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMED_4415 PF01266 FAD dependent oxidoreductase AMED_4415 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AMED_4417 PF00764 Arginosuccinate synthase AMED_4418 PF14765 Polyketide synthase dehydratase AMED_4418 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_4418 PF09277 Erythronolide synthase, docking AMED_4418 PF00698 Acyl transferase domain AMED_4418 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_4418 PF08659 KR domain AMED_4418 PF00550 Phosphopantetheine attachment site AMED_4418 PF08240 Alcohol dehydrogenase GroES-like domain AMED_4418 PF08990 Erythronolide synthase docking AMED_4418 PF16197 Ketoacyl-synthetase C-terminal extension AMED_4425 PF00144 Beta-lactamase AMED_4426 PF01565 FAD binding domain AMED_4426 PF04030 D-arabinono-1,4-lactone oxidase AMED_4427 PF00356 Bacterial regulatory proteins, lacI family AMED_4429 PF13416 Bacterial extracellular solute-binding protein AMED_4430 PF00528 Binding-protein-dependent transport system inner membrane component AMED_4431 PF00528 Binding-protein-dependent transport system inner membrane component AMED_4433 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMED_4433 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMED_4434 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMED_4434 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMED_4436 PF00544 Pectate lyase AMED_4437 PF03211 Pectate lyase AMED_4438 PF01095 Pectinesterase AMED_4439 PF04616 Glycosyl hydrolases family 43 AMED_4442 PF00931 NB-ARC domain AMED_4442 PF03704 Bacterial transcriptional activator domain AMED_4442 PF00486 Transcriptional regulatory protein, C terminal AMED_4445 PF00582 Universal stress protein family AMED_4446 PF01478 Type IV leader peptidase family AMED_4446 PF06750 Bacterial Peptidase A24 N-terminal domain AMED_4450 PF00482 Type II secretion system (T2SS), protein F AMED_4451 PF00437 Type II/IV secretion system protein AMED_4452 PF00437 Type II/IV secretion system protein AMED_4453 PF08334 Type II secretion system (T2SS), protein G AMED_4453 PF07963 Prokaryotic N-terminal methylation motif AMED_4458 PF08338 Domain of unknown function (DUF1731) AMED_4458 PF01370 NAD dependent epimerase/dehydratase family AMED_4460 PF07859 alpha/beta hydrolase fold AMED_4461 PF00107 Zinc-binding dehydrogenase AMED_4461 PF08240 Alcohol dehydrogenase GroES-like domain AMED_4463 PF00483 Nucleotidyl transferase AMED_4464 PF13439 Glycosyltransferase Family 4 AMED_4464 PF00534 Glycosyl transferases group 1 AMED_4466 PF01740 STAS domain AMED_4469 PF00703 Glycosyl hydrolases family 2 AMED_4469 PF16990 Carbohydrate binding module (family 35) AMED_4469 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain AMED_4469 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMED_4471 PF17853 GGDEF-like domain AMED_4471 PF13556 PucR C-terminal helix-turn-helix domain AMED_4472 PF14492 Elongation Factor G, domain II AMED_4472 PF03764 Elongation factor G, domain IV AMED_4472 PF00009 Elongation factor Tu GTP binding domain AMED_4472 PF03144 Elongation factor Tu domain 2 AMED_4472 PF00679 Elongation factor G C-terminus AMED_4473 PF00266 Aminotransferase class-V AMED_4475 PF09594 Glycosyltransferase family 87 AMED_4478 PF01494 FAD binding domain AMED_4481 PF07690 Major Facilitator Superfamily AMED_4482 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_4482 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_4482 PF08659 KR domain AMED_4482 PF14765 Polyketide synthase dehydratase AMED_4482 PF00698 Acyl transferase domain AMED_4482 PF16197 Ketoacyl-synthetase C-terminal extension AMED_4482 PF00550 Phosphopantetheine attachment site AMED_4483 PF00501 AMP-binding enzyme AMED_4486 PF00106 short chain dehydrogenase AMED_4487 PF03033 Glycosyltransferase family 28 N-terminal domain AMED_4487 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase AMED_4489 PF04679 ATP dependent DNA ligase C terminal region AMED_4489 PF01068 ATP dependent DNA ligase domain AMED_4489 PF13298 DNA polymerase Ligase (LigD) AMED_4491 PF01513 ATP-NAD kinase AMED_4492 PF00743 Flavin-binding monooxygenase-like AMED_4493 PF00106 short chain dehydrogenase AMED_4494 PF00561 alpha/beta hydrolase fold AMED_4495 PF00067 Cytochrome P450 AMED_4497 PF03704 Bacterial transcriptional activator domain AMED_4497 PF00931 NB-ARC domain AMED_4497 PF00486 Transcriptional regulatory protein, C terminal AMED_4498 PF00381 PTS HPr component phosphorylation site AMED_4499 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AMED_4499 PF02378 Phosphotransferase system, EIIC AMED_4500 PF00381 PTS HPr component phosphorylation site AMED_4500 PF02896 PEP-utilising enzyme, TIM barrel domain AMED_4500 PF00391 PEP-utilising enzyme, mobile domain AMED_4500 PF05524 PEP-utilising enzyme, N-terminal AMED_4500 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMED_4501 PF00294 pfkB family carbohydrate kinase AMED_4503 PF05524 PEP-utilising enzyme, N-terminal AMED_4503 PF00391 PEP-utilising enzyme, mobile domain AMED_4503 PF02896 PEP-utilising enzyme, TIM barrel domain AMED_4504 PF00899 ThiF family AMED_4507 PF00933 Glycosyl hydrolase family 3 N terminal domain AMED_4507 PF14310 Fibronectin type III-like domain AMED_4507 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMED_4508 PF00356 Bacterial regulatory proteins, lacI family AMED_4510 PF00528 Binding-protein-dependent transport system inner membrane component AMED_4511 PF00528 Binding-protein-dependent transport system inner membrane component AMED_4513 PF00356 Bacterial regulatory proteins, lacI family AMED_4514 PF00331 Glycosyl hydrolase family 10 AMED_4514 PF00553 Cellulose binding domain AMED_4515 PF01522 Polysaccharide deacetylase AMED_4515 PF00457 Glycosyl hydrolases family 11 AMED_4517 PF00313 'Cold-shock' DNA-binding domain AMED_4526 PF00072 Response regulator receiver domain AMED_4526 PF00512 His Kinase A (phospho-acceptor) domain AMED_4526 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_4526 PF00672 HAMP domain AMED_4526 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMED_4526 PF01627 Hpt domain AMED_4528 PF01699 Sodium/calcium exchanger protein AMED_4529 PF03466 LysR substrate binding domain AMED_4529 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_4530 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMED_4530 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMED_4530 PF00205 Thiamine pyrophosphate enzyme, central domain AMED_4535 PF04389 Peptidase family M28 AMED_4535 PF01447 Thermolysin metallopeptidase, catalytic domain AMED_4535 PF02868 Thermolysin metallopeptidase, alpha-helical domain AMED_4537 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMED_4537 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMED_4537 PF00703 Glycosyl hydrolases family 2 AMED_4537 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 AMED_4538 PF00356 Bacterial regulatory proteins, lacI family AMED_4539 PF00005 ABC transporter AMED_4540 PF02653 Branched-chain amino acid transport system / permease component AMED_4541 PF02653 Branched-chain amino acid transport system / permease component AMED_4543 PF05336 L-rhamnose mutarotase AMED_4545 PF00596 Class II Aldolase and Adducin N-terminal domain AMED_4547 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMED_4547 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMED_4548 PF00196 Bacterial regulatory proteins, luxR family AMED_4549 PF07730 Histidine kinase AMED_4549 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_4551 PF00356 Bacterial regulatory proteins, lacI family AMED_4552 PF00703 Glycosyl hydrolases family 2 AMED_4552 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMED_4552 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain AMED_4552 PF16990 Carbohydrate binding module (family 35) AMED_4563 PF00817 impB/mucB/samB family AMED_4563 PF11799 impB/mucB/samB family C-terminal domain AMED_4564 PF04072 Leucine carboxyl methyltransferase AMED_4565 PF11774 Lsr2 AMED_4567 PF02634 FdhD/NarQ family AMED_4568 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_4568 PF03466 LysR substrate binding domain AMED_4569 PF00549 CoA-ligase AMED_4569 PF02629 CoA binding domain AMED_4570 PF00549 CoA-ligase AMED_4570 PF08442 ATP-grasp domain AMED_4571 PF00205 Thiamine pyrophosphate enzyme, central domain AMED_4571 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMED_4571 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMED_4572 PF02515 CoA-transferase family III AMED_4573 PF00583 Acetyltransferase (GNAT) family AMED_4573 PF13380 CoA binding domain AMED_4573 PF13607 Succinyl-CoA ligase like flavodoxin domain AMED_4574 PF07690 Major Facilitator Superfamily AMED_4575 PF00392 Bacterial regulatory proteins, gntR family AMED_4575 PF07729 FCD domain AMED_4576 PF08546 Ketopantoate reductase PanE/ApbA C terminal AMED_4576 PF02558 Ketopantoate reductase PanE/ApbA AMED_4577 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMED_4577 PF01568 Molydopterin dinucleotide binding domain AMED_4577 PF00384 Molybdopterin oxidoreductase AMED_4578 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AMED_4578 PF10531 SLBB domain AMED_4578 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMED_4579 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMED_4579 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMED_4579 PF01568 Molydopterin dinucleotide binding domain AMED_4579 PF00384 Molybdopterin oxidoreductase AMED_4580 PF01261 Xylose isomerase-like TIM barrel AMED_4581 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMED_4581 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMED_4582 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMED_4582 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMED_4582 PF00205 Thiamine pyrophosphate enzyme, central domain AMED_4583 PF00941 FAD binding domain in molybdopterin dehydrogenase AMED_4583 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMED_4584 PF00111 2Fe-2S iron-sulfur cluster binding domain AMED_4584 PF01799 [2Fe-2S] binding domain AMED_4585 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMED_4585 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMED_4586 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMED_4587 PF00860 Permease family AMED_4589 PF02595 Glycerate kinase family AMED_4591 PF00723 Glycosyl hydrolases family 15 AMED_4591 PF09137 Glucodextranase, domain N AMED_4594 PF03099 Biotin/lipoate A/B protein ligase family AMED_4594 PF00293 NUDIX domain AMED_4595 PF01494 FAD binding domain AMED_4596 PF00440 Bacterial regulatory proteins, tetR family AMED_4597 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMED_4597 PF02929 Beta galactosidase small chain AMED_4597 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMED_4597 PF16353 Domain of unknown function(DUF4981) AMED_4598 PF00356 Bacterial regulatory proteins, lacI family AMED_4599 PF00324 Amino acid permease AMED_4600 PF04960 Glutaminase AMED_4603 PF00291 Pyridoxal-phosphate dependent enzyme AMED_4604 PF00550 Phosphopantetheine attachment site AMED_4604 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_4604 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_4604 PF08659 KR domain AMED_4604 PF16197 Ketoacyl-synthetase C-terminal extension AMED_4604 PF00698 Acyl transferase domain AMED_4605 PF00550 Phosphopantetheine attachment site AMED_4605 PF08659 KR domain AMED_4605 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_4605 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_4605 PF16197 Ketoacyl-synthetase C-terminal extension AMED_4605 PF00698 Acyl transferase domain AMED_4605 PF00107 Zinc-binding dehydrogenase AMED_4605 PF08240 Alcohol dehydrogenase GroES-like domain AMED_4605 PF14765 Polyketide synthase dehydratase AMED_4606 PF00550 Phosphopantetheine attachment site AMED_4607 PF12697 Alpha/beta hydrolase family AMED_4610 PF07690 Major Facilitator Superfamily AMED_4612 PF04679 ATP dependent DNA ligase C terminal region AMED_4612 PF01068 ATP dependent DNA ligase domain AMED_4612 PF13298 DNA polymerase Ligase (LigD) AMED_4613 PF00108 Thiolase, N-terminal domain AMED_4613 PF02803 Thiolase, C-terminal domain AMED_4614 PF01638 HxlR-like helix-turn-helix AMED_4615 PF00041 Fibronectin type III domain AMED_4615 PF00704 Glycosyl hydrolases family 18 AMED_4616 PF08485 Polysaccharide biosynthesis protein C-terminal AMED_4616 PF02719 Polysaccharide biosynthesis protein AMED_4619 PF03466 LysR substrate binding domain AMED_4619 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_4622 PF02515 CoA-transferase family III AMED_4623 PF02515 CoA-transferase family III AMED_4624 PF00356 Bacterial regulatory proteins, lacI family AMED_4626 PF01546 Peptidase family M20/M25/M40 AMED_4626 PF07687 Peptidase dimerisation domain AMED_4627 PF12697 Alpha/beta hydrolase family AMED_4634 PF00248 Aldo/keto reductase family AMED_4635 PF00296 Luciferase-like monooxygenase AMED_4636 PF02673 Bacitracin resistance protein BacA AMED_4638 PF01432 Peptidase family M3 AMED_4639 PF00574 Clp protease AMED_4640 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AMED_4640 PF00056 lactate/malate dehydrogenase, NAD binding domain AMED_4647 PF17678 Glycosyl hydrolase family 92 N-terminal domain AMED_4647 PF07971 Glycosyl hydrolase family 92 AMED_4648 PF07519 Tannase and feruloyl esterase AMED_4653 PF07687 Peptidase dimerisation domain AMED_4653 PF01546 Peptidase family M20/M25/M40 AMED_4655 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMED_4656 PF00528 Binding-protein-dependent transport system inner membrane component AMED_4658 PF00005 ABC transporter AMED_4658 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMED_4661 PF17676 LD-carboxypeptidase C-terminal domain AMED_4661 PF02016 LD-carboxypeptidase N-terminal domain AMED_4662 PF00326 Prolyl oligopeptidase family AMED_4662 PF07676 WD40-like Beta Propeller Repeat AMED_4669 PF01145 SPFH domain / Band 7 family AMED_4674 PF07690 Major Facilitator Superfamily AMED_4674 PF00083 Sugar (and other) transporter AMED_4676 PF01494 FAD binding domain AMED_4678 PF01022 Bacterial regulatory protein, arsR family AMED_4680 PF00440 Bacterial regulatory proteins, tetR family AMED_4689 PF08281 Sigma-70, region 4 AMED_4689 PF04542 Sigma-70 region 2 AMED_4695 PF00440 Bacterial regulatory proteins, tetR family AMED_4696 PF12833 Helix-turn-helix domain AMED_4696 PF12852 Cupin AMED_4702 PF08281 Sigma-70, region 4 AMED_4702 PF04542 Sigma-70 region 2 AMED_4704 PF00067 Cytochrome P450 AMED_4706 PF00005 ABC transporter AMED_4706 PF13732 Domain of unknown function (DUF4162) AMED_4708 PF00176 SNF2 family N-terminal domain AMED_4708 PF00271 Helicase conserved C-terminal domain AMED_4708 PF12419 SNF2 Helicase protein AMED_4710 PF01494 FAD binding domain AMED_4711 PF00440 Bacterial regulatory proteins, tetR family AMED_4713 PF18158 Adaptive response protein AidB N-terminal domain AMED_4713 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_4713 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_4714 PF17925 Tetracyclin repressor-like, C-terminal domain AMED_4714 PF00440 Bacterial regulatory proteins, tetR family AMED_4717 PF07883 Cupin domain AMED_4717 PF01381 Helix-turn-helix AMED_4720 PF01022 Bacterial regulatory protein, arsR family AMED_4722 PF00589 Phage integrase family AMED_4722 PF02899 Phage integrase, N-terminal SAM-like domain AMED_4727 PF00265 Thymidine kinase AMED_4728 PF13397 RNA polymerase-binding protein AMED_4729 PF00293 NUDIX domain AMED_4731 PF02585 GlcNAc-PI de-N-acetylase AMED_4732 PF00535 Glycosyl transferase family 2 AMED_4733 PF00795 Carbon-nitrogen hydrolase AMED_4733 PF00535 Glycosyl transferase family 2 AMED_4734 PF01979 Amidohydrolase family AMED_4735 PF04055 Radical SAM superfamily AMED_4735 PF12544 Lysine-2,3-aminomutase AMED_4738 PF01965 DJ-1/PfpI family AMED_4738 PF12833 Helix-turn-helix domain AMED_4739 PF01638 HxlR-like helix-turn-helix AMED_4743 PF00486 Transcriptional regulatory protein, C terminal AMED_4743 PF00931 NB-ARC domain AMED_4743 PF03704 Bacterial transcriptional activator domain AMED_4745 PF13575 Domain of unknown function (DUF4135) AMED_4745 PF05147 Lanthionine synthetase C-like protein AMED_4747 PF00498 FHA domain AMED_4747 PF03704 Bacterial transcriptional activator domain AMED_4747 PF00486 Transcriptional regulatory protein, C terminal AMED_4748 PF00156 Phosphoribosyl transferase domain AMED_4750 PF06368 Methylaspartate mutase E chain (MutE) AMED_4751 PF01336 OB-fold nucleic acid binding domain AMED_4751 PF00152 tRNA synthetases class II (D, K and N) AMED_4752 PF01645 Conserved region in glutamate synthase AMED_4753 PF00501 AMP-binding enzyme AMED_4753 PF13193 AMP-binding enzyme C-terminal domain AMED_4753 PF00550 Phosphopantetheine attachment site AMED_4753 PF00668 Condensation domain AMED_4755 PF01063 Amino-transferase class IV AMED_4757 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_4757 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_4757 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_4758 PF00196 Bacterial regulatory proteins, luxR family AMED_4759 PF01212 Beta-eliminating lyase AMED_4760 PF00206 Lyase AMED_4760 PF02655 ATP-grasp domain AMED_4761 PF00206 Lyase AMED_4761 PF02655 ATP-grasp domain AMED_4762 PF00291 Pyridoxal-phosphate dependent enzyme AMED_4762 PF00571 CBS domain AMED_4763 PF00975 Thioesterase domain AMED_4765 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMED_4765 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMED_4766 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_4766 PF00668 Condensation domain AMED_4766 PF16197 Ketoacyl-synthetase C-terminal extension AMED_4766 PF00698 Acyl transferase domain AMED_4766 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_4766 PF00550 Phosphopantetheine attachment site AMED_4767 PF00501 AMP-binding enzyme AMED_4767 PF13193 AMP-binding enzyme C-terminal domain AMED_4767 PF00668 Condensation domain AMED_4767 PF00550 Phosphopantetheine attachment site AMED_4768 PF03621 MbtH-like protein AMED_4769 PF07993 Male sterility protein AMED_4769 PF00501 AMP-binding enzyme AMED_4769 PF00668 Condensation domain AMED_4769 PF00550 Phosphopantetheine attachment site AMED_4769 PF13193 AMP-binding enzyme C-terminal domain AMED_4770 PF00975 Thioesterase domain AMED_4770 PF00668 Condensation domain AMED_4770 PF13193 AMP-binding enzyme C-terminal domain AMED_4770 PF00501 AMP-binding enzyme AMED_4770 PF00550 Phosphopantetheine attachment site AMED_4773 PF07687 Peptidase dimerisation domain AMED_4773 PF01546 Peptidase family M20/M25/M40 AMED_4775 PF00155 Aminotransferase class I and II AMED_4776 PF00196 Bacterial regulatory proteins, luxR family AMED_4777 PF03466 LysR substrate binding domain AMED_4777 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_4778 PF01494 FAD binding domain AMED_4779 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AMED_4779 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMED_4787 PF13378 Enolase C-terminal domain-like AMED_4787 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMED_4788 PF07729 FCD domain AMED_4788 PF00392 Bacterial regulatory proteins, gntR family AMED_4789 PF00528 Binding-protein-dependent transport system inner membrane component AMED_4790 PF00528 Binding-protein-dependent transport system inner membrane component AMED_4791 PF13340 Putative transposase of IS4/5 family (DUF4096) AMED_4793 PF03621 MbtH-like protein AMED_4794 PF00501 AMP-binding enzyme AMED_4794 PF13193 AMP-binding enzyme C-terminal domain AMED_4794 PF00668 Condensation domain AMED_4794 PF00975 Thioesterase domain AMED_4794 PF00550 Phosphopantetheine attachment site AMED_4795 PF00291 Pyridoxal-phosphate dependent enzyme AMED_4796 PF02423 Ornithine cyclodeaminase/mu-crystallin family AMED_4797 PF02310 B12 binding domain AMED_4798 PF06368 Methylaspartate mutase E chain (MutE) AMED_4800 PF00501 AMP-binding enzyme AMED_4800 PF00668 Condensation domain AMED_4800 PF00975 Thioesterase domain AMED_4800 PF13193 AMP-binding enzyme C-terminal domain AMED_4800 PF00550 Phosphopantetheine attachment site AMED_4804 PF00668 Condensation domain AMED_4804 PF13193 AMP-binding enzyme C-terminal domain AMED_4804 PF00501 AMP-binding enzyme AMED_4804 PF00550 Phosphopantetheine attachment site AMED_4805 PF00931 NB-ARC domain AMED_4805 PF00486 Transcriptional regulatory protein, C terminal AMED_4805 PF03704 Bacterial transcriptional activator domain AMED_4807 PF00931 NB-ARC domain AMED_4807 PF00486 Transcriptional regulatory protein, C terminal AMED_4807 PF03704 Bacterial transcriptional activator domain AMED_4809 PF09278 MerR, DNA binding AMED_4809 PF00376 MerR family regulatory protein AMED_4817 PF03664 Glycosyl hydrolase family 62 AMED_4817 PF00652 Ricin-type beta-trefoil lectin domain AMED_4819 PF00067 Cytochrome P450 AMED_4823 PF12706 Beta-lactamase superfamily domain AMED_4826 PF00072 Response regulator receiver domain AMED_4826 PF00196 Bacterial regulatory proteins, luxR family AMED_4827 PF00072 Response regulator receiver domain AMED_4827 PF00196 Bacterial regulatory proteins, luxR family AMED_4829 PF07676 WD40-like Beta Propeller Repeat AMED_4829 PF04052 TolB amino-terminal domain AMED_4845 PF00004 ATPase family associated with various cellular activities (AAA) AMED_4845 PF16450 Proteasomal ATPase OB C-terminal domain AMED_4845 PF17758 Proteasomal ATPase OB N-terminal domain AMED_4850 PF01979 Amidohydrolase family AMED_4851 PF09339 IclR helix-turn-helix domain AMED_4851 PF01614 Bacterial transcriptional regulator AMED_4852 PF02515 CoA-transferase family III AMED_4854 PF00775 Dioxygenase AMED_4854 PF04444 Catechol dioxygenase N terminus AMED_4858 PF02839 Carbohydrate binding domain AMED_4860 PF00005 ABC transporter AMED_4862 PF01494 FAD binding domain AMED_4864 PF00106 short chain dehydrogenase AMED_4865 PF03466 LysR substrate binding domain AMED_4865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_4867 PF02525 Flavodoxin-like fold AMED_4868 PF00440 Bacterial regulatory proteins, tetR family AMED_4872 PF01037 Lrp/AsnC ligand binding domain AMED_4873 PF00557 Metallopeptidase family M24 AMED_4873 PF01321 Creatinase/Prolidase N-terminal domain AMED_4874 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AMED_4874 PF01367 5'-3' exonuclease, C-terminal SAM fold AMED_4875 PF17668 Acetyltransferase (GNAT) domain AMED_4875 PF13530 Sterol carrier protein domain AMED_4876 PF17668 Acetyltransferase (GNAT) domain AMED_4876 PF13530 Sterol carrier protein domain AMED_4878 PF08148 DSHCT (NUC185) domain AMED_4878 PF00270 DEAD/DEAH box helicase AMED_4878 PF00271 Helicase conserved C-terminal domain AMED_4880 PF00781 Diacylglycerol kinase catalytic domain AMED_4881 PF00902 Sec-independent protein translocase protein (TatC) AMED_4882 PF02416 mttA/Hcf106 family AMED_4884 PF13280 WYL domain AMED_4885 PF13280 WYL domain AMED_4886 PF01638 HxlR-like helix-turn-helix AMED_4888 PF00106 short chain dehydrogenase AMED_4890 PF03136 Pup-ligase protein AMED_4893 PF00227 Proteasome subunit AMED_4894 PF00227 Proteasome subunit AMED_4895 PF05639 Pup-like protein AMED_4896 PF03136 Pup-ligase protein AMED_4897 PF00293 NUDIX domain AMED_4904 PF00892 EamA-like transporter family AMED_4905 PF17758 Proteasomal ATPase OB N-terminal domain AMED_4905 PF16450 Proteasomal ATPase OB C-terminal domain AMED_4905 PF00004 ATPase family associated with various cellular activities (AAA) AMED_4909 PF08704 tRNA methyltransferase complex GCD14 subunit AMED_4910 PF02163 Peptidase family M50 AMED_4910 PF00571 CBS domain AMED_4913 PF13614 AAA domain AMED_4914 PF08029 HisG, C-terminal domain AMED_4914 PF01634 ATP phosphoribosyltransferase AMED_4915 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AMED_4916 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AMED_4916 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMED_4917 PF12833 Helix-turn-helix domain AMED_4917 PF00730 HhH-GPD superfamily base excision DNA repair protein AMED_4917 PF06029 AlkA N-terminal domain AMED_4917 PF02805 Metal binding domain of Ada AMED_4918 PF13419 Haloacid dehalogenase-like hydrolase AMED_4919 PF02574 Homocysteine S-methyltransferase AMED_4919 PF00809 Pterin binding enzyme AMED_4919 PF02607 B12 binding domain AMED_4919 PF02310 B12 binding domain AMED_4919 PF02965 Vitamin B12 dependent methionine synthase, activation domain AMED_4925 PF00144 Beta-lactamase AMED_4926 PF07690 Major Facilitator Superfamily AMED_4929 PF00005 ABC transporter AMED_4930 PF01406 tRNA synthetases class I (C) catalytic domain AMED_4931 PF13411 MerR HTH family regulatory protein AMED_4931 PF07739 TipAS antibiotic-recognition domain AMED_4932 PF13382 Adenine deaminase C-terminal domain AMED_4932 PF01979 Amidohydrolase family AMED_4934 PF17863 AAA lid domain AMED_4934 PF01078 Magnesium chelatase, subunit ChlI AMED_4939 PF07690 Major Facilitator Superfamily AMED_4942 PF00083 Sugar (and other) transporter AMED_4943 PF00072 Response regulator receiver domain AMED_4943 PF00486 Transcriptional regulatory protein, C terminal AMED_4944 PF00512 His Kinase A (phospho-acceptor) domain AMED_4944 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_4944 PF00672 HAMP domain AMED_4947 PF00588 SpoU rRNA Methylase family AMED_4949 PF13519 von Willebrand factor type A domain AMED_4949 PF07584 Aerotolerance regulator N-terminal AMED_4950 PF01882 Protein of unknown function DUF58 AMED_4951 PF07726 ATPase family associated with various cellular activities (AAA) AMED_4951 PF17863 AAA lid domain AMED_4952 PF12804 MobA-like NTP transferase domain AMED_4954 PF00877 NlpC/P60 family AMED_4955 PF00330 Aconitase family (aconitate hydratase) AMED_4955 PF00694 Aconitase C-terminal domain AMED_4956 PF02308 MgtC family AMED_4958 PF00440 Bacterial regulatory proteins, tetR family AMED_4959 PF00561 alpha/beta hydrolase fold AMED_4961 PF10017 Histidine-specific methyltransferase, SAM-dependent AMED_4963 PF12867 DinB superfamily AMED_4963 PF03781 Sulfatase-modifying factor enzyme 1 AMED_4964 PF04107 Glutamate-cysteine ligase family 2(GCS2) AMED_4966 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMED_4966 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AMED_4967 PF00561 alpha/beta hydrolase fold AMED_4972 PF00440 Bacterial regulatory proteins, tetR family AMED_4973 PF01595 Cyclin M transmembrane N-terminal domain AMED_4973 PF03471 Transporter associated domain AMED_4973 PF00571 CBS domain AMED_4974 PF01595 Cyclin M transmembrane N-terminal domain AMED_4974 PF00571 CBS domain AMED_4977 PF00248 Aldo/keto reductase family AMED_4980 PF01370 NAD dependent epimerase/dehydratase family AMED_4981 PF00535 Glycosyl transferase family 2 AMED_4982 PF16363 GDP-mannose 4,6 dehydratase AMED_4983 PF02347 Glycine cleavage system P-protein AMED_4984 PF13411 MerR HTH family regulatory protein AMED_4986 PF00085 Thioredoxin AMED_4987 PF13411 MerR HTH family regulatory protein AMED_4988 PF02577 Bifunctional nuclease AMED_4989 PF00376 MerR family regulatory protein AMED_4990 PF00498 FHA domain AMED_4991 PF01597 Glycine cleavage H-protein AMED_4996 PF00501 AMP-binding enzyme AMED_4996 PF13193 AMP-binding enzyme C-terminal domain AMED_4997 PF00378 Enoyl-CoA hydratase/isomerase AMED_4998 PF00561 alpha/beta hydrolase fold AMED_4999 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMED_4999 PF10414 Sirohaem synthase dimerisation region AMED_5002 PF00253 Ribosomal protein S14p/S29e AMED_5003 PF00471 Ribosomal protein L33 AMED_5005 PF01197 Ribosomal protein L31 AMED_5006 PF01783 Ribosomal L32p protein family AMED_5010 PF01738 Dienelactone hydrolase family AMED_5012 PF00282 Pyridoxal-dependent decarboxylase conserved domain AMED_5014 PF00296 Luciferase-like monooxygenase AMED_5021 PF00296 Luciferase-like monooxygenase AMED_5023 PF00005 ABC transporter AMED_5024 PF00528 Binding-protein-dependent transport system inner membrane component AMED_5025 PF00753 Metallo-beta-lactamase superfamily AMED_5025 PF16123 Hydroxyacylglutathione hydrolase C-terminus AMED_5026 PF01409 tRNA synthetases class II core domain (F) AMED_5026 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AMED_5029 PF00664 ABC transporter transmembrane region AMED_5029 PF00005 ABC transporter AMED_5030 PF00005 ABC transporter AMED_5030 PF00664 ABC transporter transmembrane region AMED_5031 PF03621 MbtH-like protein AMED_5033 PF02261 Aspartate decarboxylase AMED_5034 PF13193 AMP-binding enzyme C-terminal domain AMED_5034 PF00668 Condensation domain AMED_5034 PF00501 AMP-binding enzyme AMED_5034 PF00550 Phosphopantetheine attachment site AMED_5035 PF01032 FecCD transport family AMED_5036 PF01032 FecCD transport family AMED_5037 PF00005 ABC transporter AMED_5039 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AMED_5040 PF00551 Formyl transferase AMED_5040 PF01370 NAD dependent epimerase/dehydratase family AMED_5040 PF02911 Formyl transferase, C-terminal domain AMED_5042 PF16875 Glycosyl hydrolase family 36 N-terminal domain AMED_5042 PF16874 Glycosyl hydrolase family 36 C-terminal domain AMED_5044 PF00528 Binding-protein-dependent transport system inner membrane component AMED_5046 PF12848 ABC transporter AMED_5046 PF00005 ABC transporter AMED_5048 PF00378 Enoyl-CoA hydratase/isomerase AMED_5049 PF00704 Glycosyl hydrolases family 18 AMED_5049 PF00041 Fibronectin type III domain AMED_5049 PF00553 Cellulose binding domain AMED_5050 PF00589 Phage integrase family AMED_5054 PF13340 Putative transposase of IS4/5 family (DUF4096) AMED_5057 PF00589 Phage integrase family AMED_5062 PF00149 Calcineurin-like phosphoesterase AMED_5062 PF16656 Purple acid Phosphatase, N-terminal domain AMED_5063 PF00722 Glycosyl hydrolases family 16 AMED_5064 PF00331 Glycosyl hydrolase family 10 AMED_5064 PF00553 Cellulose binding domain AMED_5065 PF01047 MarR family AMED_5065 PF00480 ROK family AMED_5066 PF00728 Glycosyl hydrolase family 20, catalytic domain AMED_5066 PF02838 Glycosyl hydrolase family 20, domain 2 AMED_5067 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain AMED_5067 PF00703 Glycosyl hydrolases family 2 AMED_5067 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMED_5068 PF01270 Glycosyl hydrolases family 8 AMED_5071 PF13378 Enolase C-terminal domain-like AMED_5071 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMED_5072 PF00356 Bacterial regulatory proteins, lacI family AMED_5073 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMED_5073 PF13378 Enolase C-terminal domain-like AMED_5074 PF00528 Binding-protein-dependent transport system inner membrane component AMED_5076 PF00005 ABC transporter AMED_5077 PF00512 His Kinase A (phospho-acceptor) domain AMED_5077 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_5077 PF00672 HAMP domain AMED_5078 PF00486 Transcriptional regulatory protein, C terminal AMED_5078 PF00072 Response regulator receiver domain AMED_5082 PF00561 alpha/beta hydrolase fold AMED_5083 PF07690 Major Facilitator Superfamily AMED_5084 PF01047 MarR family AMED_5085 PF00230 Major intrinsic protein AMED_5087 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMED_5087 PF00205 Thiamine pyrophosphate enzyme, central domain AMED_5087 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMED_5088 PF01738 Dienelactone hydrolase family AMED_5090 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMED_5092 PF01494 FAD binding domain AMED_5094 PF03466 LysR substrate binding domain AMED_5094 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_5096 PF00005 ABC transporter AMED_5097 PF02653 Branched-chain amino acid transport system / permease component AMED_5099 PF08281 Sigma-70, region 4 AMED_5099 PF04542 Sigma-70 region 2 AMED_5101 PF06689 ClpX C4-type zinc finger AMED_5101 PF10431 C-terminal, D2-small domain, of ClpB protein AMED_5101 PF07724 AAA domain (Cdc48 subfamily) AMED_5105 PF01183 Glycosyl hydrolases family 25 AMED_5106 PF06969 HemN C-terminal domain AMED_5106 PF04055 Radical SAM superfamily AMED_5107 PF00535 Glycosyl transferase family 2 AMED_5114 PF00106 short chain dehydrogenase AMED_5116 PF00009 Elongation factor Tu GTP binding domain AMED_5116 PF00009 Elongation factor Tu GTP binding domain AMED_5116 PF09105 Elongation factor SelB, winged helix AMED_5116 PF03144 Elongation factor Tu domain 2 AMED_5116 PF09105 Elongation factor SelB, winged helix AMED_5116 PF09107 Elongation factor SelB, winged helix AMED_5116 PF09107 Elongation factor SelB, winged helix AMED_5116 PF03144 Elongation factor Tu domain 2 AMED_5116 PF09106 Elongation factor SelB, winged helix AMED_5116 PF09106 Elongation factor SelB, winged helix AMED_5117 PF12390 Selenocysteine synthase N terminal AMED_5117 PF03841 L-seryl-tRNA selenium transferase AMED_5118 PF00586 AIR synthase related protein, N-terminal domain AMED_5118 PF02769 AIR synthase related protein, C-terminal domain AMED_5123 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_5125 PF02525 Flavodoxin-like fold AMED_5128 PF00561 alpha/beta hydrolase fold AMED_5128 PF08386 TAP-like protein AMED_5129 PF01494 FAD binding domain AMED_5135 PF00561 alpha/beta hydrolase fold AMED_5136 PF00440 Bacterial regulatory proteins, tetR family AMED_5138 PF02983 Alpha-lytic protease prodomain AMED_5146 PF03176 MMPL family AMED_5151 PF02675 S-adenosylmethionine decarboxylase AMED_5152 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMED_5152 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMED_5161 PF00072 Response regulator receiver domain AMED_5161 PF01339 CheB methylesterase AMED_5162 PF07730 Histidine kinase AMED_5162 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_5162 PF00672 HAMP domain AMED_5164 PF00072 Response regulator receiver domain AMED_5164 PF00196 Bacterial regulatory proteins, luxR family AMED_5167 PF03091 CutA1 divalent ion tolerance protein AMED_5168 PF00012 Hsp70 protein AMED_5170 PF00350 Dynamin family AMED_5171 PF00350 Dynamin family AMED_5175 PF01494 FAD binding domain AMED_5176 PF02607 B12 binding domain AMED_5176 PF02310 B12 binding domain AMED_5176 PF02965 Vitamin B12 dependent methionine synthase, activation domain AMED_5176 PF00809 Pterin binding enzyme AMED_5176 PF02574 Homocysteine S-methyltransferase AMED_5177 PF00296 Luciferase-like monooxygenase AMED_5178 PF00083 Sugar (and other) transporter AMED_5179 PF03442 Carbohydrate binding domain X2 AMED_5179 PF00942 Cellulose binding domain AMED_5180 PF08240 Alcohol dehydrogenase GroES-like domain AMED_5180 PF00107 Zinc-binding dehydrogenase AMED_5185 PF00553 Cellulose binding domain AMED_5185 PF00150 Cellulase (glycosyl hydrolase family 5) AMED_5186 PF00248 Aldo/keto reductase family AMED_5188 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AMED_5188 PF00553 Cellulose binding domain AMED_5189 PF00356 Bacterial regulatory proteins, lacI family AMED_5191 PF00553 Cellulose binding domain AMED_5191 PF00041 Fibronectin type III domain AMED_5191 PF01341 Glycosyl hydrolases family 6 AMED_5192 PF00150 Cellulase (glycosyl hydrolase family 5) AMED_5192 PF00553 Cellulose binding domain AMED_5193 PF00553 Cellulose binding domain AMED_5193 PF00041 Fibronectin type III domain AMED_5193 PF02011 Glycosyl hydrolase family 48 AMED_5194 PF00356 Bacterial regulatory proteins, lacI family AMED_5196 PF00528 Binding-protein-dependent transport system inner membrane component AMED_5197 PF00528 Binding-protein-dependent transport system inner membrane component AMED_5198 PF00232 Glycosyl hydrolase family 1 AMED_5199 PF00920 Dehydratase family AMED_5201 PF00571 CBS domain AMED_5202 PF03167 Uracil DNA glycosylase superfamily AMED_5203 PF13298 DNA polymerase Ligase (LigD) AMED_5203 PF01068 ATP dependent DNA ligase domain AMED_5203 PF04679 ATP dependent DNA ligase C terminal region AMED_5204 PF01068 ATP dependent DNA ligase domain AMED_5204 PF13298 DNA polymerase Ligase (LigD) AMED_5204 PF04679 ATP dependent DNA ligase C terminal region AMED_5205 PF02735 Ku70/Ku80 beta-barrel domain AMED_5210 PF00296 Luciferase-like monooxygenase AMED_5212 PF13581 Histidine kinase-like ATPase domain AMED_5213 PF04545 Sigma-70, region 4 AMED_5213 PF04542 Sigma-70 region 2 AMED_5213 PF04539 Sigma-70 region 3 AMED_5214 PF05235 CHAD domain AMED_5214 PF01928 CYTH domain AMED_5218 PF03364 Polyketide cyclase / dehydrase and lipid transport AMED_5225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_5225 PF03466 LysR substrate binding domain AMED_5226 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMED_5226 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMED_5231 PF07690 Major Facilitator Superfamily AMED_5231 PF00083 Sugar (and other) transporter AMED_5232 PF00583 Acetyltransferase (GNAT) family AMED_5234 PF05593 RHS Repeat AMED_5234 PF05488 PAAR motif AMED_5244 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMED_5244 PF00941 FAD binding domain in molybdopterin dehydrogenase AMED_5245 PF00111 2Fe-2S iron-sulfur cluster binding domain AMED_5245 PF01799 [2Fe-2S] binding domain AMED_5246 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMED_5246 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMED_5250 PF00356 Bacterial regulatory proteins, lacI family AMED_5252 PF00722 Glycosyl hydrolases family 16 AMED_5254 PF00753 Metallo-beta-lactamase superfamily AMED_5256 PF00925 GTP cyclohydrolase II AMED_5259 PF11799 impB/mucB/samB family C-terminal domain AMED_5259 PF00817 impB/mucB/samB family AMED_5262 PF00583 Acetyltransferase (GNAT) family AMED_5263 PF05221 S-adenosyl-L-homocysteine hydrolase AMED_5263 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AMED_5266 PF02735 Ku70/Ku80 beta-barrel domain AMED_5270 PF03259 Roadblock/LC7 domain AMED_5271 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_5273 PF00005 ABC transporter AMED_5273 PF00664 ABC transporter transmembrane region AMED_5274 PF00664 ABC transporter transmembrane region AMED_5274 PF00005 ABC transporter AMED_5275 PF13298 DNA polymerase Ligase (LigD) AMED_5275 PF04679 ATP dependent DNA ligase C terminal region AMED_5275 PF01068 ATP dependent DNA ligase domain AMED_5278 PF00931 NB-ARC domain AMED_5278 PF00486 Transcriptional regulatory protein, C terminal AMED_5278 PF03704 Bacterial transcriptional activator domain AMED_5279 PF01965 DJ-1/PfpI family AMED_5280 PF01965 DJ-1/PfpI family AMED_5283 PF00753 Metallo-beta-lactamase superfamily AMED_5287 PF00378 Enoyl-CoA hydratase/isomerase AMED_5287 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMED_5287 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMED_5288 PF00561 alpha/beta hydrolase fold AMED_5293 PF01979 Amidohydrolase family AMED_5294 PF13291 ACT domain AMED_5294 PF02824 TGS domain AMED_5294 PF04607 Region found in RelA / SpoT proteins AMED_5295 PF00156 Phosphoribosyl transferase domain AMED_5296 PF02355 Protein export membrane protein AMED_5296 PF07549 SecD/SecF GG Motif AMED_5297 PF02355 Protein export membrane protein AMED_5297 PF07549 SecD/SecF GG Motif AMED_5298 PF02699 Preprotein translocase subunit AMED_5299 PF05496 Holliday junction DNA helicase RuvB P-loop domain AMED_5299 PF17864 RuvB AAA lid domain AMED_5299 PF05491 RuvB C-terminal winged helix domain AMED_5300 PF01330 RuvA N terminal domain AMED_5300 PF07499 RuvA, C-terminal domain AMED_5301 PF02075 Crossover junction endodeoxyribonuclease RuvC AMED_5304 PF01709 Transcriptional regulator AMED_5305 PF01174 SNO glutamine amidotransferase family AMED_5308 PF01381 Helix-turn-helix AMED_5308 PF08671 Anti-repressor SinI AMED_5309 PF01494 FAD binding domain AMED_5310 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_5310 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_5310 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_5311 PF00668 Condensation domain AMED_5311 PF00550 Phosphopantetheine attachment site AMED_5311 PF00501 AMP-binding enzyme AMED_5311 PF13193 AMP-binding enzyme C-terminal domain AMED_5314 PF01680 SOR/SNZ family AMED_5316 PF08031 Berberine and berberine like AMED_5316 PF01565 FAD binding domain AMED_5317 PF00009 Elongation factor Tu GTP binding domain AMED_5317 PF14492 Elongation Factor G, domain II AMED_5317 PF00679 Elongation factor G C-terminus AMED_5317 PF03144 Elongation factor Tu domain 2 AMED_5317 PF03764 Elongation factor G, domain IV AMED_5318 PF13478 XdhC Rossmann domain AMED_5318 PF02625 XdhC and CoxI family AMED_5322 PF13439 Glycosyltransferase Family 4 AMED_5323 PF03279 Bacterial lipid A biosynthesis acyltransferase AMED_5326 PF01230 HIT domain AMED_5327 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMED_5327 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMED_5327 PF03129 Anticodon binding domain AMED_5328 PF00881 Nitroreductase family AMED_5329 PF02397 Bacterial sugar transferase AMED_5330 PF04686 Streptomyces sporulation and cell division protein, SsgA AMED_5332 PF13180 PDZ domain AMED_5332 PF00595 PDZ domain AMED_5333 PF06480 FtsH Extracellular AMED_5333 PF00004 ATPase family associated with various cellular activities (AAA) AMED_5333 PF01434 Peptidase family M41 AMED_5333 PF17862 AAA+ lid domain AMED_5334 PF03773 Predicted permease AMED_5338 PF00106 short chain dehydrogenase AMED_5339 PF00378 Enoyl-CoA hydratase/isomerase AMED_5340 PF13193 AMP-binding enzyme C-terminal domain AMED_5340 PF00501 AMP-binding enzyme AMED_5341 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AMED_5341 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMED_5343 PF07687 Peptidase dimerisation domain AMED_5343 PF01546 Peptidase family M20/M25/M40 AMED_5346 PF01979 Amidohydrolase family AMED_5346 PF13382 Adenine deaminase C-terminal domain AMED_5349 PF00732 GMC oxidoreductase AMED_5349 PF05199 GMC oxidoreductase AMED_5351 PF01494 FAD binding domain AMED_5353 PF13193 AMP-binding enzyme C-terminal domain AMED_5353 PF00501 AMP-binding enzyme AMED_5358 PF16925 Tetracyclin repressor-like, C-terminal domain AMED_5358 PF00440 Bacterial regulatory proteins, tetR family AMED_5366 PF01842 ACT domain AMED_5366 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMED_5366 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMED_5367 PF00528 Binding-protein-dependent transport system inner membrane component AMED_5368 PF00528 Binding-protein-dependent transport system inner membrane component AMED_5370 PF00356 Bacterial regulatory proteins, lacI family AMED_5371 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_5373 PF07690 Major Facilitator Superfamily AMED_5376 PF08361 MAATS-type transcriptional repressor, C-terminal region AMED_5376 PF00440 Bacterial regulatory proteins, tetR family AMED_5384 PF00392 Bacterial regulatory proteins, gntR family AMED_5384 PF07729 FCD domain AMED_5388 PF00583 Acetyltransferase (GNAT) family AMED_5392 PF00732 GMC oxidoreductase AMED_5392 PF05199 GMC oxidoreductase AMED_5393 PF00483 Nucleotidyl transferase AMED_5394 PF00550 Phosphopantetheine attachment site AMED_5394 PF00668 Condensation domain AMED_5394 PF13193 AMP-binding enzyme C-terminal domain AMED_5394 PF00501 AMP-binding enzyme AMED_5394 PF16197 Ketoacyl-synthetase C-terminal extension AMED_5394 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_5394 PF00202 Aminotransferase class-III AMED_5394 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_5398 PF06722 Protein of unknown function (DUF1205) AMED_5400 PF03301 Tryptophan 2,3-dioxygenase AMED_5402 PF03559 NDP-hexose 2,3-dehydratase AMED_5403 PF00196 Bacterial regulatory proteins, luxR family AMED_5403 PF00072 Response regulator receiver domain AMED_5404 PF07730 Histidine kinase AMED_5406 PF00005 ABC transporter AMED_5408 PF17843 MycE methyltransferase N-terminal AMED_5409 PF13193 AMP-binding enzyme C-terminal domain AMED_5409 PF00668 Condensation domain AMED_5409 PF00550 Phosphopantetheine attachment site AMED_5409 PF00975 Thioesterase domain AMED_5409 PF00501 AMP-binding enzyme AMED_5410 PF06722 Protein of unknown function (DUF1205) AMED_5411 PF06722 Protein of unknown function (DUF1205) AMED_5412 PF06722 Protein of unknown function (DUF1205) AMED_5413 PF06722 Protein of unknown function (DUF1205) AMED_5414 PF06722 Protein of unknown function (DUF1205) AMED_5416 PF13732 Domain of unknown function (DUF4162) AMED_5416 PF00005 ABC transporter AMED_5418 PF06722 Protein of unknown function (DUF1205) AMED_5419 PF06722 Protein of unknown function (DUF1205) AMED_5420 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMED_5421 PF03704 Bacterial transcriptional activator domain AMED_5421 PF00486 Transcriptional regulatory protein, C terminal AMED_5422 PF06722 Protein of unknown function (DUF1205) AMED_5423 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AMED_5423 PF00391 PEP-utilising enzyme, mobile domain AMED_5424 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMED_5424 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMED_5432 PF03364 Polyketide cyclase / dehydrase and lipid transport AMED_5433 PF00550 Phosphopantetheine attachment site AMED_5434 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_5434 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_5435 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_5435 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_5436 PF07883 Cupin domain AMED_5437 PF04673 Polyketide synthesis cyclase AMED_5439 PF00854 POT family AMED_5440 PF00891 O-methyltransferase domain AMED_5440 PF16864 Dimerisation domain AMED_5441 PF01494 FAD binding domain AMED_5442 PF01494 FAD binding domain AMED_5444 PF00296 Luciferase-like monooxygenase AMED_5446 PF00067 Cytochrome P450 AMED_5447 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMED_5449 PF16363 GDP-mannose 4,6 dehydratase AMED_5450 PF01370 NAD dependent epimerase/dehydratase family AMED_5453 PF00196 Bacterial regulatory proteins, luxR family AMED_5454 PF03527 RHS protein AMED_5460 PF00916 Sulfate permease family AMED_5460 PF01740 STAS domain AMED_5462 PF00582 Universal stress protein family AMED_5466 PF00690 Cation transporter/ATPase, N-terminus AMED_5466 PF00689 Cation transporting ATPase, C-terminus AMED_5469 PF00871 Acetokinase family AMED_5470 PF00583 Acetyltransferase (GNAT) family AMED_5470 PF13380 CoA binding domain AMED_5470 PF13607 Succinyl-CoA ligase like flavodoxin domain AMED_5471 PF13492 GAF domain AMED_5471 PF07730 Histidine kinase AMED_5471 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_5471 PF13185 GAF domain AMED_5473 PF00196 Bacterial regulatory proteins, luxR family AMED_5473 PF00072 Response regulator receiver domain AMED_5474 PF01654 Cytochrome bd terminal oxidase subunit I AMED_5475 PF02322 Cytochrome bd terminal oxidase subunit II AMED_5476 PF00005 ABC transporter AMED_5476 PF00664 ABC transporter transmembrane region AMED_5477 PF09364 XFP N-terminal domain AMED_5477 PF09363 XFP C-terminal domain AMED_5477 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase AMED_5478 PF00582 Universal stress protein family AMED_5479 PF01769 Divalent cation transporter AMED_5479 PF00571 CBS domain AMED_5479 PF03448 MgtE intracellular N domain AMED_5480 PF00582 Universal stress protein family AMED_5483 PF00582 Universal stress protein family AMED_5486 PF04107 Glutamate-cysteine ligase family 2(GCS2) AMED_5489 PF12900 Pyridoxamine 5'-phosphate oxidase AMED_5491 PF07730 Histidine kinase AMED_5492 PF00072 Response regulator receiver domain AMED_5492 PF00196 Bacterial regulatory proteins, luxR family AMED_5496 PF07730 Histidine kinase AMED_5496 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_5497 PF00196 Bacterial regulatory proteins, luxR family AMED_5497 PF00072 Response regulator receiver domain AMED_5501 PF03033 Glycosyltransferase family 28 N-terminal domain AMED_5502 PF01047 MarR family AMED_5507 PF17200 Single Cache domain 2 AMED_5507 PF07730 Histidine kinase AMED_5508 PF00072 Response regulator receiver domain AMED_5508 PF00196 Bacterial regulatory proteins, luxR family AMED_5515 PF10502 Signal peptidase, peptidase S26 AMED_5517 PF00872 Transposase, Mutator family AMED_5524 PF00067 Cytochrome P450 AMED_5528 PF00296 Luciferase-like monooxygenase AMED_5530 PF00990 Diguanylate cyclase, GGDEF domain AMED_5530 PF08448 PAS fold AMED_5534 PF07690 Major Facilitator Superfamily AMED_5536 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMED_5536 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMED_5539 PF02709 N-terminal domain of galactosyltransferase AMED_5539 PF00535 Glycosyl transferase family 2 AMED_5540 PF00535 Glycosyl transferase family 2 AMED_5541 PF00005 ABC transporter AMED_5541 PF00664 ABC transporter transmembrane region AMED_5542 PF00664 ABC transporter transmembrane region AMED_5542 PF00005 ABC transporter AMED_5546 PF06441 Epoxide hydrolase N terminus AMED_5547 PF07859 alpha/beta hydrolase fold AMED_5557 PF07690 Major Facilitator Superfamily AMED_5559 PF03704 Bacterial transcriptional activator domain AMED_5559 PF00486 Transcriptional regulatory protein, C terminal AMED_5559 PF00931 NB-ARC domain AMED_5560 PF13847 Methyltransferase domain AMED_5560 PF03551 Transcriptional regulator PadR-like family AMED_5565 PF00704 Glycosyl hydrolases family 18 AMED_5568 PF03358 NADPH-dependent FMN reductase AMED_5571 PF07730 Histidine kinase AMED_5571 PF13492 GAF domain AMED_5571 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_5571 PF13185 GAF domain AMED_5573 PF00072 Response regulator receiver domain AMED_5573 PF00196 Bacterial regulatory proteins, luxR family AMED_5575 PF16200 C-terminal region of band_7 AMED_5575 PF01145 SPFH domain / Band 7 family AMED_5578 PF05139 Erythromycin esterase AMED_5578 PF00156 Phosphoribosyl transferase domain AMED_5588 PF01594 AI-2E family transporter AMED_5592 PF04107 Glutamate-cysteine ligase family 2(GCS2) AMED_5601 PF00486 Transcriptional regulatory protein, C terminal AMED_5601 PF00072 Response regulator receiver domain AMED_5602 PF00512 His Kinase A (phospho-acceptor) domain AMED_5602 PF00672 HAMP domain AMED_5602 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_5604 PF13439 Glycosyltransferase Family 4 AMED_5604 PF00534 Glycosyl transferases group 1 AMED_5610 PF00440 Bacterial regulatory proteins, tetR family AMED_5610 PF17754 MftR C-terminal domain AMED_5611 PF08281 Sigma-70, region 4 AMED_5611 PF04542 Sigma-70 region 2 AMED_5612 PF08281 Sigma-70, region 4 AMED_5612 PF04542 Sigma-70 region 2 AMED_5616 PF00703 Glycosyl hydrolases family 2 AMED_5616 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMED_5616 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMED_5617 PF03466 LysR substrate binding domain AMED_5617 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_5624 PF00069 Protein kinase domain AMED_5625 PF08281 Sigma-70, region 4 AMED_5625 PF04542 Sigma-70 region 2 AMED_5625 PF12680 SnoaL-like domain AMED_5626 PF04072 Leucine carboxyl methyltransferase AMED_5628 PF00067 Cytochrome P450 AMED_5630 PF00067 Cytochrome P450 AMED_5632 PF01494 FAD binding domain AMED_5635 PF06441 Epoxide hydrolase N terminus AMED_5636 PF06441 Epoxide hydrolase N terminus AMED_5638 PF00156 Phosphoribosyl transferase domain AMED_5640 PF00196 Bacterial regulatory proteins, luxR family AMED_5641 PF00211 Adenylate and Guanylate cyclase catalytic domain AMED_5641 PF13191 AAA ATPase domain AMED_5648 PF07690 Major Facilitator Superfamily AMED_5651 PF00196 Bacterial regulatory proteins, luxR family AMED_5654 PF00005 ABC transporter AMED_5662 PF12849 PBP superfamily domain AMED_5663 PF00528 Binding-protein-dependent transport system inner membrane component AMED_5664 PF00528 Binding-protein-dependent transport system inner membrane component AMED_5666 PF00672 HAMP domain AMED_5666 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_5666 PF00512 His Kinase A (phospho-acceptor) domain AMED_5667 PF00072 Response regulator receiver domain AMED_5667 PF00486 Transcriptional regulatory protein, C terminal AMED_5668 PF00535 Glycosyl transferase family 2 AMED_5669 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase AMED_5671 PF07690 Major Facilitator Superfamily AMED_5672 PF01494 FAD binding domain AMED_5675 PF00356 Bacterial regulatory proteins, lacI family AMED_5677 PF16295 Tetracyclin repressor-like, C-terminal domain AMED_5677 PF00440 Bacterial regulatory proteins, tetR family AMED_5682 PF00561 alpha/beta hydrolase fold AMED_5688 PF08281 Sigma-70, region 4 AMED_5688 PF04542 Sigma-70 region 2 AMED_5692 PF00857 Isochorismatase family AMED_5694 PF08386 TAP-like protein AMED_5694 PF00561 alpha/beta hydrolase fold AMED_5697 PF01494 FAD binding domain AMED_5698 PF09209 Tetracyclin repressor-like, C-terminal domain AMED_5698 PF00440 Bacterial regulatory proteins, tetR family AMED_5701 PF01593 Flavin containing amine oxidoreductase AMED_5702 PF01614 Bacterial transcriptional regulator AMED_5702 PF09339 IclR helix-turn-helix domain AMED_5705 PF00561 alpha/beta hydrolase fold AMED_5706 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AMED_5707 PF00313 'Cold-shock' DNA-binding domain AMED_5708 PF08361 MAATS-type transcriptional repressor, C-terminal region AMED_5708 PF00440 Bacterial regulatory proteins, tetR family AMED_5710 PF00106 short chain dehydrogenase AMED_5712 PF03795 YCII-related domain AMED_5714 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMED_5714 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMED_5714 PF00703 Glycosyl hydrolases family 2 AMED_5714 PF02929 Beta galactosidase small chain AMED_5714 PF16353 Domain of unknown function(DUF4981) AMED_5715 PF02080 TrkA-C domain AMED_5715 PF03471 Transporter associated domain AMED_5715 PF00999 Sodium/hydrogen exchanger family AMED_5716 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMED_5717 PF00355 Rieske [2Fe-2S] domain AMED_5718 PF13631 Cytochrome b(N-terminal)/b6/petB AMED_5719 PF13631 Cytochrome b(N-terminal)/b6/petB AMED_5724 PF01494 FAD binding domain AMED_5726 PF00072 Response regulator receiver domain AMED_5726 PF00486 Transcriptional regulatory protein, C terminal AMED_5727 PF00512 His Kinase A (phospho-acceptor) domain AMED_5727 PF00672 HAMP domain AMED_5727 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_5729 PF01638 HxlR-like helix-turn-helix AMED_5731 PF01047 MarR family AMED_5732 PF00654 Voltage gated chloride channel AMED_5740 PF13247 4Fe-4S dicluster domain AMED_5740 PF12800 4Fe-4S binding domain AMED_5747 PF01226 Formate/nitrite transporter AMED_5749 PF03600 Citrate transporter AMED_5753 PF13520 Amino acid permease AMED_5754 PF04072 Leucine carboxyl methyltransferase AMED_5757 PF00941 FAD binding domain in molybdopterin dehydrogenase AMED_5757 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMED_5758 PF01799 [2Fe-2S] binding domain AMED_5758 PF00111 2Fe-2S iron-sulfur cluster binding domain AMED_5760 PF00248 Aldo/keto reductase family AMED_5761 PF08240 Alcohol dehydrogenase GroES-like domain AMED_5761 PF00107 Zinc-binding dehydrogenase AMED_5761 PF13823 Alcohol dehydrogenase GroES-associated AMED_5764 PF00248 Aldo/keto reductase family AMED_5772 PF00356 Bacterial regulatory proteins, lacI family AMED_5773 PF00356 Bacterial regulatory proteins, lacI family AMED_5777 PF00356 Bacterial regulatory proteins, lacI family AMED_5781 PF12833 Helix-turn-helix domain AMED_5781 PF02311 AraC-like ligand binding domain AMED_5784 PF00196 Bacterial regulatory proteins, luxR family AMED_5806 PF13340 Putative transposase of IS4/5 family (DUF4096) AMED_5809 PF09704 CRISPR-associated protein (Cas_Cas5) AMED_5810 PF09344 CT1975-like protein AMED_5814 PF18019 HD domain AMED_5814 PF18395 Cas3 C-terminal domain AMED_5827 PF00041 Fibronectin type III domain AMED_5827 PF02011 Glycosyl hydrolase family 48 AMED_5827 PF00553 Cellulose binding domain AMED_5831 PF00011 Hsp20/alpha crystallin family AMED_5833 PF01425 Amidase AMED_5834 PF00376 MerR family regulatory protein AMED_5834 PF09278 MerR, DNA binding AMED_5835 PF01022 Bacterial regulatory protein, arsR family AMED_5836 PF01545 Cation efflux family AMED_5836 PF16916 Dimerisation domain of Zinc Transporter AMED_5839 PF08220 DeoR-like helix-turn-helix domain AMED_5839 PF00455 DeoR C terminal sensor domain AMED_5841 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMED_5841 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMED_5846 PF01547 Bacterial extracellular solute-binding protein AMED_5849 PF16919 Protein kinase G rubredoxin domain AMED_5849 PF16918 Protein kinase G tetratricopeptide repeat AMED_5849 PF00069 Protein kinase domain AMED_5852 PF08402 TOBE domain AMED_5852 PF00005 ABC transporter AMED_5854 PF04199 Putative cyclase AMED_5855 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMED_5855 PF00205 Thiamine pyrophosphate enzyme, central domain AMED_5855 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMED_5859 PF00196 Bacterial regulatory proteins, luxR family AMED_5859 PF00072 Response regulator receiver domain AMED_5861 PF02525 Flavodoxin-like fold AMED_5862 PF01047 MarR family AMED_5863 PF02355 Protein export membrane protein AMED_5865 PF11066 Protein of unknown function (DUF2867) AMED_5865 PF13460 NAD(P)H-binding AMED_5867 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_5867 PF03466 LysR substrate binding domain AMED_5869 PF13291 ACT domain AMED_5869 PF00291 Pyridoxal-phosphate dependent enzyme AMED_5872 PF00877 NlpC/P60 family AMED_5877 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMED_5877 PF07498 Rho termination factor, N-terminal domain AMED_5877 PF07497 Rho termination factor, RNA-binding domain AMED_5880 PF00652 Ricin-type beta-trefoil lectin domain AMED_5880 PF00331 Glycosyl hydrolase family 10 AMED_5882 PF00106 short chain dehydrogenase AMED_5883 PF00106 short chain dehydrogenase AMED_5884 PF01256 Carbohydrate kinase AMED_5885 PF13456 Reverse transcriptase-like AMED_5885 PF00300 Histidine phosphatase superfamily (branch 1) AMED_5891 PF08448 PAS fold AMED_5891 PF00512 His Kinase A (phospho-acceptor) domain AMED_5891 PF13426 PAS domain AMED_5891 PF00072 Response regulator receiver domain AMED_5891 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_5895 PF09137 Glucodextranase, domain N AMED_5895 PF00723 Glycosyl hydrolases family 15 AMED_5896 PF04978 Protein of unknown function (DUF664) AMED_5897 PF00248 Aldo/keto reductase family AMED_5900 PF08386 TAP-like protein AMED_5900 PF00561 alpha/beta hydrolase fold AMED_5903 PF00486 Transcriptional regulatory protein, C terminal AMED_5903 PF03704 Bacterial transcriptional activator domain AMED_5903 PF00931 NB-ARC domain AMED_5915 PF02899 Phage integrase, N-terminal SAM-like domain AMED_5915 PF00589 Phage integrase family AMED_5916 PF00171 Aldehyde dehydrogenase family AMED_5926 PF01625 Peptide methionine sulfoxide reductase AMED_5927 PF04389 Peptidase family M28 AMED_5927 PF01447 Thermolysin metallopeptidase, catalytic domain AMED_5927 PF02868 Thermolysin metallopeptidase, alpha-helical domain AMED_5927 PF04389 Peptidase family M28 AMED_5927 PF01447 Thermolysin metallopeptidase, catalytic domain AMED_5927 PF02868 Thermolysin metallopeptidase, alpha-helical domain AMED_5929 PF13732 Domain of unknown function (DUF4162) AMED_5929 PF00005 ABC transporter AMED_5930 PF01061 ABC-2 type transporter AMED_5931 PF04075 F420H(2)-dependent quinone reductase AMED_5933 PF00106 short chain dehydrogenase AMED_5934 PF00069 Protein kinase domain AMED_5934 PF03793 PASTA domain AMED_5937 PF02146 Sir2 family AMED_5939 PF10531 SLBB domain AMED_5939 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AMED_5939 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMED_5943 PF04185 Phosphoesterase family AMED_5948 PF10503 Esterase PHB depolymerase AMED_5953 PF00083 Sugar (and other) transporter AMED_5958 PF00501 AMP-binding enzyme AMED_5958 PF13193 AMP-binding enzyme C-terminal domain AMED_5963 PF07728 AAA domain (dynein-related subfamily) AMED_5965 PF05762 VWA domain containing CoxE-like protein AMED_5966 PF00444 Ribosomal protein L36 AMED_5968 PF01638 HxlR-like helix-turn-helix AMED_5969 PF00743 Flavin-binding monooxygenase-like AMED_5970 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain AMED_5970 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain AMED_5970 PF02278 Polysaccharide lyase family 8, super-sandwich domain AMED_5971 PF00171 Aldehyde dehydrogenase family AMED_5973 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMED_5973 PF13378 Enolase C-terminal domain-like AMED_5974 PF00701 Dihydrodipicolinate synthetase family AMED_5976 PF01614 Bacterial transcriptional regulator AMED_5977 PF16363 GDP-mannose 4,6 dehydratase AMED_5980 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain AMED_5980 PF01522 Polysaccharide deacetylase AMED_5982 PF00196 Bacterial regulatory proteins, luxR family AMED_5982 PF00072 Response regulator receiver domain AMED_5987 PF00111 2Fe-2S iron-sulfur cluster binding domain AMED_5990 PF00465 Iron-containing alcohol dehydrogenase AMED_5992 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMED_5995 PF11838 ERAP1-like C-terminal domain AMED_5995 PF01433 Peptidase family M1 domain AMED_5996 PF00501 AMP-binding enzyme AMED_5996 PF00668 Condensation domain AMED_5996 PF00550 Phosphopantetheine attachment site AMED_5996 PF13193 AMP-binding enzyme C-terminal domain AMED_5997 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AMED_5997 PF01926 50S ribosome-binding GTPase AMED_5999 PF02224 Cytidylate kinase AMED_6003 PF00999 Sodium/hydrogen exchanger family AMED_6004 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AMED_6004 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMED_6005 PF04072 Leucine carboxyl methyltransferase AMED_6006 PF00849 RNA pseudouridylate synthase AMED_6006 PF01479 S4 domain AMED_6007 PF04079 Segregation and condensation complex subunit ScpB AMED_6008 PF02616 Segregation and condensation protein ScpA AMED_6010 PF13614 AAA domain AMED_6011 PF02899 Phage integrase, N-terminal SAM-like domain AMED_6011 PF00589 Phage integrase family AMED_6013 PF00293 NUDIX domain AMED_6014 PF00117 Glutamine amidotransferase class-I AMED_6014 PF06418 CTP synthase N-terminus AMED_6016 PF07729 FCD domain AMED_6016 PF00392 Bacterial regulatory proteins, gntR family AMED_6017 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AMED_6018 PF01177 Asp/Glu/Hydantoin racemase AMED_6021 PF11382 Copper transport outer membrane protein, MctB AMED_6024 PF08240 Alcohol dehydrogenase GroES-like domain AMED_6024 PF00107 Zinc-binding dehydrogenase AMED_6026 PF02463 RecF/RecN/SMC N terminal domain AMED_6027 PF01513 ATP-NAD kinase AMED_6028 PF01728 FtsJ-like methyltransferase AMED_6028 PF01479 S4 domain AMED_6030 PF18407 GCN5-related N-acetyltransferase like domain AMED_6030 PF13344 Haloacid dehalogenase-like hydrolase AMED_6032 PF00579 tRNA synthetases class I (W and Y) AMED_6033 PF02245 Methylpurine-DNA glycosylase (MPG) AMED_6035 PF13761 Domain of unknown function (DUF4166) AMED_6037 PF00206 Lyase AMED_6037 PF14698 Argininosuccinate lyase C-terminal AMED_6038 PF00764 Arginosuccinate synthase AMED_6039 PF02863 Arginine repressor, C-terminal domain AMED_6039 PF01316 Arginine repressor, DNA binding domain AMED_6040 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMED_6040 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMED_6041 PF00202 Aminotransferase class-III AMED_6042 PF00696 Amino acid kinase family AMED_6043 PF01960 ArgJ family AMED_6044 PF02774 Semialdehyde dehydrogenase, dimerisation domain AMED_6044 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMED_6048 PF00561 alpha/beta hydrolase fold AMED_6050 PF03147 Ferredoxin-fold anticodon binding domain AMED_6050 PF03484 tRNA synthetase B5 domain AMED_6050 PF03483 B3/4 domain AMED_6050 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AMED_6050 PF01588 Putative tRNA binding domain AMED_6051 PF01409 tRNA synthetases class II core domain (F) AMED_6051 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AMED_6053 PF00588 SpoU rRNA Methylase family AMED_6053 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMED_6054 PF00453 Ribosomal protein L20 AMED_6055 PF01632 Ribosomal protein L35 AMED_6056 PF05198 Translation initiation factor IF-3, N-terminal domain AMED_6056 PF00707 Translation initiation factor IF-3, C-terminal domain AMED_6058 PF00392 Bacterial regulatory proteins, gntR family AMED_6058 PF07729 FCD domain AMED_6059 PF00291 Pyridoxal-phosphate dependent enzyme AMED_6061 PF01614 Bacterial transcriptional regulator AMED_6061 PF09339 IclR helix-turn-helix domain AMED_6062 PF00294 pfkB family carbohydrate kinase AMED_6064 PF07969 Amidohydrolase family AMED_6065 PF02447 GntP family permease AMED_6068 PF00528 Binding-protein-dependent transport system inner membrane component AMED_6069 PF00528 Binding-protein-dependent transport system inner membrane component AMED_6070 PF00728 Glycosyl hydrolase family 20, catalytic domain AMED_6070 PF02838 Glycosyl hydrolase family 20, domain 2 AMED_6072 PF00072 Response regulator receiver domain AMED_6073 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AMED_6073 PF17203 Single cache domain 3 AMED_6073 PF00989 PAS fold AMED_6073 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_6074 PF00375 Sodium:dicarboxylate symporter family AMED_6076 PF07690 Major Facilitator Superfamily AMED_6079 PF04542 Sigma-70 region 2 AMED_6079 PF04545 Sigma-70, region 4 AMED_6082 PF17755 UvrA DNA-binding domain AMED_6082 PF17760 UvrA interaction domain AMED_6082 PF00005 ABC transporter AMED_6084 PF00753 Metallo-beta-lactamase superfamily AMED_6090 PF00027 Cyclic nucleotide-binding domain AMED_6090 PF07885 Ion channel AMED_6091 PF00075 RNase H AMED_6094 PF16990 Carbohydrate binding module (family 35) AMED_6094 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMED_6094 PF00703 Glycosyl hydrolases family 2 AMED_6094 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain AMED_6095 PF00135 Carboxylesterase family AMED_6097 PF00999 Sodium/hydrogen exchanger family AMED_6098 PF00300 Histidine phosphatase superfamily (branch 1) AMED_6100 PF05423 Mycobacterium membrane protein AMED_6102 PF00356 Bacterial regulatory proteins, lacI family AMED_6107 PF07676 WD40-like Beta Propeller Repeat AMED_6107 PF00326 Prolyl oligopeptidase family AMED_6108 PF03741 Integral membrane protein TerC family AMED_6109 PF00005 ABC transporter AMED_6113 PF00378 Enoyl-CoA hydratase/isomerase AMED_6115 PF05576 PS-10 peptidase S37 AMED_6117 PF04851 Type III restriction enzyme, res subunit AMED_6117 PF00271 Helicase conserved C-terminal domain AMED_6117 PF17757 UvrB interaction domain AMED_6117 PF12344 Ultra-violet resistance protein B AMED_6117 PF02151 UvrB/uvrC motif AMED_6122 PF01121 Dephospho-CoA kinase AMED_6122 PF04229 GrpB protein AMED_6127 PF00575 S1 RNA binding domain AMED_6128 PF08241 Methyltransferase domain AMED_6133 PF08361 MAATS-type transcriptional repressor, C-terminal region AMED_6133 PF00440 Bacterial regulatory proteins, tetR family AMED_6134 PF02311 AraC-like ligand binding domain AMED_6134 PF12833 Helix-turn-helix domain AMED_6135 PF08240 Alcohol dehydrogenase GroES-like domain AMED_6135 PF00107 Zinc-binding dehydrogenase AMED_6138 PF01367 5'-3' exonuclease, C-terminal SAM fold AMED_6138 PF00476 DNA polymerase family A AMED_6138 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AMED_6139 PF03061 Thioesterase superfamily AMED_6140 PF03466 LysR substrate binding domain AMED_6140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_6143 PF02653 Branched-chain amino acid transport system / permease component AMED_6144 PF02653 Branched-chain amino acid transport system / permease component AMED_6144 PF11862 Domain of unknown function (DUF3382) AMED_6145 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMED_6145 PF00005 ABC transporter AMED_6146 PF00005 ABC transporter AMED_6148 PF00072 Response regulator receiver domain AMED_6148 PF03861 ANTAR domain AMED_6150 PF12307 Protein of unknown function (DUF3631) AMED_6159 PF00436 Single-strand binding protein family AMED_6168 PF04686 Streptomyces sporulation and cell division protein, SsgA AMED_6169 PF00293 NUDIX domain AMED_6169 PF13344 Haloacid dehalogenase-like hydrolase AMED_6181 PF12680 SnoaL-like domain AMED_6181 PF08281 Sigma-70, region 4 AMED_6181 PF04542 Sigma-70 region 2 AMED_6191 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_6191 PF07730 Histidine kinase AMED_6192 PF00072 Response regulator receiver domain AMED_6192 PF00196 Bacterial regulatory proteins, luxR family AMED_6196 PF00196 Bacterial regulatory proteins, luxR family AMED_6196 PF00072 Response regulator receiver domain AMED_6197 PF07730 Histidine kinase AMED_6201 PF01370 NAD dependent epimerase/dehydratase family AMED_6202 PF00005 ABC transporter AMED_6205 PF08281 Sigma-70, region 4 AMED_6205 PF04542 Sigma-70 region 2 AMED_6206 PF00465 Iron-containing alcohol dehydrogenase AMED_6207 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMED_6207 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMED_6208 PF00171 Aldehyde dehydrogenase family AMED_6209 PF13378 Enolase C-terminal domain-like AMED_6209 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMED_6212 PF06441 Epoxide hydrolase N terminus AMED_6216 PF01965 DJ-1/PfpI family AMED_6216 PF12833 Helix-turn-helix domain AMED_6217 PF06441 Epoxide hydrolase N terminus AMED_6219 PF00106 short chain dehydrogenase AMED_6223 PF04542 Sigma-70 region 2 AMED_6223 PF04539 Sigma-70 region 3 AMED_6223 PF04545 Sigma-70, region 4 AMED_6227 PF00291 Pyridoxal-phosphate dependent enzyme AMED_6228 PF00501 AMP-binding enzyme AMED_6228 PF13193 AMP-binding enzyme C-terminal domain AMED_6228 PF00668 Condensation domain AMED_6228 PF00550 Phosphopantetheine attachment site AMED_6229 PF00975 Thioesterase domain AMED_6230 PF13193 AMP-binding enzyme C-terminal domain AMED_6230 PF00550 Phosphopantetheine attachment site AMED_6230 PF00668 Condensation domain AMED_6230 PF00668 Condensation domain AMED_6230 PF13193 AMP-binding enzyme C-terminal domain AMED_6230 PF00501 AMP-binding enzyme AMED_6230 PF00501 AMP-binding enzyme AMED_6230 PF00550 Phosphopantetheine attachment site AMED_6231 PF00668 Condensation domain AMED_6231 PF00975 Thioesterase domain AMED_6231 PF08241 Methyltransferase domain AMED_6231 PF13193 AMP-binding enzyme C-terminal domain AMED_6231 PF00391 PEP-utilising enzyme, mobile domain AMED_6231 PF00550 Phosphopantetheine attachment site AMED_6231 PF00501 AMP-binding enzyme AMED_6232 PF00501 AMP-binding enzyme AMED_6232 PF13193 AMP-binding enzyme C-terminal domain AMED_6232 PF00668 Condensation domain AMED_6232 PF00550 Phosphopantetheine attachment site AMED_6234 PF00550 Phosphopantetheine attachment site AMED_6234 PF07993 Male sterility protein AMED_6234 PF00668 Condensation domain AMED_6234 PF13193 AMP-binding enzyme C-terminal domain AMED_6234 PF00501 AMP-binding enzyme AMED_6236 PF03621 MbtH-like protein AMED_6237 PF00501 AMP-binding enzyme AMED_6237 PF13193 AMP-binding enzyme C-terminal domain AMED_6237 PF00668 Condensation domain AMED_6237 PF00975 Thioesterase domain AMED_6237 PF00550 Phosphopantetheine attachment site AMED_6238 PF00067 Cytochrome P450 AMED_6241 PF07993 Male sterility protein AMED_6241 PF00550 Phosphopantetheine attachment site AMED_6241 PF00668 Condensation domain AMED_6241 PF13193 AMP-binding enzyme C-terminal domain AMED_6241 PF00501 AMP-binding enzyme AMED_6242 PF00550 Phosphopantetheine attachment site AMED_6242 PF07993 Male sterility protein AMED_6242 PF00668 Condensation domain AMED_6242 PF13193 AMP-binding enzyme C-terminal domain AMED_6242 PF00501 AMP-binding enzyme AMED_6243 PF00550 Phosphopantetheine attachment site AMED_6243 PF00668 Condensation domain AMED_6243 PF00501 AMP-binding enzyme AMED_6243 PF13193 AMP-binding enzyme C-terminal domain AMED_6244 PF00072 Response regulator receiver domain AMED_6244 PF00196 Bacterial regulatory proteins, luxR family AMED_6247 PF07690 Major Facilitator Superfamily AMED_6249 PF03799 Cell division protein FtsQ AMED_6249 PF08478 POTRA domain, FtsQ-type AMED_6250 PF02875 Mur ligase family, glutamate ligase domain AMED_6250 PF08245 Mur ligase middle domain AMED_6250 PF01225 Mur ligase family, catalytic domain AMED_6251 PF03033 Glycosyltransferase family 28 N-terminal domain AMED_6251 PF04101 Glycosyltransferase family 28 C-terminal domain AMED_6252 PF01098 Cell cycle protein AMED_6253 PF08245 Mur ligase middle domain AMED_6254 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AMED_6254 PF00953 Glycosyl transferase family 4 AMED_6255 PF08245 Mur ligase middle domain AMED_6255 PF02875 Mur ligase family, glutamate ligase domain AMED_6255 PF01225 Mur ligase family, catalytic domain AMED_6256 PF02875 Mur ligase family, glutamate ligase domain AMED_6256 PF08245 Mur ligase middle domain AMED_6256 PF01225 Mur ligase family, catalytic domain AMED_6258 PF03717 Penicillin-binding Protein dimerisation domain AMED_6258 PF00905 Penicillin binding protein transpeptidase domain AMED_6260 PF01795 MraW methylase family AMED_6261 PF02381 MraZ protein, putative antitoxin-like AMED_6267 PF07726 ATPase family associated with various cellular activities (AAA) AMED_6267 PF17863 AAA lid domain AMED_6269 PF01841 Transglutaminase-like superfamily AMED_6269 PF13559 Domain of unknown function (DUF4129) AMED_6269 PF11992 Domain of unknown function (DUF3488) AMED_6273 PF13614 AAA domain AMED_6274 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AMED_6274 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMED_6275 PF00962 Adenosine/AMP deaminase AMED_6277 PF01180 Dihydroorotate dehydrogenase AMED_6278 PF01425 Amidase AMED_6282 PF00994 Probable molybdopterin binding domain AMED_6282 PF18146 Damage-inducible protein CinA KH domain AMED_6282 PF02464 Competence-damaged protein AMED_6284 PF04055 Radical SAM superfamily AMED_6284 PF00919 Uncharacterized protein family UPF0004 AMED_6284 PF18693 TRAM domain AMED_6285 PF00583 Acetyltransferase (GNAT) family AMED_6291 PF01580 FtsK/SpoIIIE family AMED_6291 PF17854 FtsK alpha domain AMED_6291 PF09397 Ftsk gamma domain AMED_6291 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AMED_6293 PF03358 NADPH-dependent FMN reductase AMED_6297 PF00324 Amino acid permease AMED_6299 PF17770 Ribonuclease J C-terminal domain AMED_6299 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AMED_6299 PF12706 Beta-lactamase superfamily domain AMED_6300 PF00701 Dihydrodipicolinate synthetase family AMED_6301 PF00069 Protein kinase domain AMED_6303 PF01566 Natural resistance-associated macrophage protein AMED_6303 PF03358 NADPH-dependent FMN reductase AMED_6305 PF02511 Thymidylate synthase complementing protein AMED_6308 PF06224 Winged helix DNA-binding domain AMED_6313 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_6313 PF03466 LysR substrate binding domain AMED_6314 PF09084 NMT1/THI5 like AMED_6316 PF05173 Dihydrodipicolinate reductase, C-terminus AMED_6316 PF01113 Dihydrodipicolinate reductase, N-terminus AMED_6317 PF00675 Insulinase (Peptidase family M16) AMED_6317 PF05193 Peptidase M16 inactive domain AMED_6318 PF00575 S1 RNA binding domain AMED_6318 PF00013 KH domain AMED_6318 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AMED_6318 PF01138 3' exoribonuclease family, domain 1 AMED_6319 PF00312 Ribosomal protein S15 AMED_6322 PF01687 Riboflavin kinase AMED_6322 PF06574 FAD synthetase AMED_6323 PF09142 tRNA Pseudouridine synthase II, C terminal AMED_6323 PF16198 tRNA pseudouridylate synthase B C-terminal domain AMED_6323 PF01509 TruB family pseudouridylate synthase (N terminal domain) AMED_6326 PF07690 Major Facilitator Superfamily AMED_6328 PF02272 DHHA1 domain AMED_6328 PF01368 DHH family AMED_6329 PF08241 Methyltransferase domain AMED_6330 PF15975 Flotillin AMED_6330 PF01145 SPFH domain / Band 7 family AMED_6333 PF08241 Methyltransferase domain AMED_6336 PF02033 Ribosome-binding factor A AMED_6338 PF00009 Elongation factor Tu GTP binding domain AMED_6338 PF11987 Translation-initiation factor 2 AMED_6338 PF04760 Translation initiation factor IF-2, N-terminal region AMED_6340 PF08529 NusA N-terminal domain AMED_6340 PF13184 NusA-like KH domain AMED_6341 PF02576 RimP N-terminal domain AMED_6341 PF17384 RimP C-terminal SH3 domain AMED_6347 PF13977 BetI-type transcriptional repressor, C-terminal AMED_6347 PF00440 Bacterial regulatory proteins, tetR family AMED_6349 PF07730 Histidine kinase AMED_6350 PF00072 Response regulator receiver domain AMED_6350 PF00196 Bacterial regulatory proteins, luxR family AMED_6352 PF01638 HxlR-like helix-turn-helix AMED_6354 PF00440 Bacterial regulatory proteins, tetR family AMED_6355 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AMED_6355 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMED_6358 PF00072 Response regulator receiver domain AMED_6358 PF00486 Transcriptional regulatory protein, C terminal AMED_6359 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_6359 PF00512 His Kinase A (phospho-acceptor) domain AMED_6361 PF00486 Transcriptional regulatory protein, C terminal AMED_6361 PF00931 NB-ARC domain AMED_6361 PF03704 Bacterial transcriptional activator domain AMED_6365 PF03466 LysR substrate binding domain AMED_6365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_6366 PF02515 CoA-transferase family III AMED_6367 PF00378 Enoyl-CoA hydratase/isomerase AMED_6368 PF06314 Acetoacetate decarboxylase (ADC) AMED_6369 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMED_6369 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMED_6370 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_6370 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_6370 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_6371 PF13399 LytR cell envelope-related transcriptional attenuator AMED_6371 PF03816 Cell envelope-related transcriptional attenuator domain AMED_6372 PF00106 short chain dehydrogenase AMED_6373 PF12680 SnoaL-like domain AMED_6373 PF08281 Sigma-70, region 4 AMED_6373 PF04542 Sigma-70 region 2 AMED_6374 PF02467 Transcription factor WhiB AMED_6376 PF04542 Sigma-70 region 2 AMED_6376 PF08281 Sigma-70, region 4 AMED_6377 PF03466 LysR substrate binding domain AMED_6377 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_6378 PF13593 SBF-like CPA transporter family (DUF4137) AMED_6380 PF07732 Multicopper oxidase AMED_6380 PF07731 Multicopper oxidase AMED_6381 PF00067 Cytochrome P450 AMED_6389 PF00486 Transcriptional regulatory protein, C terminal AMED_6389 PF03704 Bacterial transcriptional activator domain AMED_6389 PF00931 NB-ARC domain AMED_6390 PF04650 YSIRK type signal peptide AMED_6390 PF17210 SdrD B-like domain AMED_6390 PF00746 LPXTG cell wall anchor motif AMED_6390 PF17961 Bacterial Ig domain AMED_6396 PF00266 Aminotransferase class-V AMED_6398 PF00561 alpha/beta hydrolase fold AMED_6400 PF00487 Fatty acid desaturase AMED_6408 PF08281 Sigma-70, region 4 AMED_6408 PF04542 Sigma-70 region 2 AMED_6408 PF12680 SnoaL-like domain AMED_6411 PF00440 Bacterial regulatory proteins, tetR family AMED_6411 PF16925 Tetracyclin repressor-like, C-terminal domain AMED_6414 PF04616 Glycosyl hydrolases family 43 AMED_6414 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain AMED_6417 PF08281 Sigma-70, region 4 AMED_6417 PF04542 Sigma-70 region 2 AMED_6418 PF03795 YCII-related domain AMED_6419 PF00561 alpha/beta hydrolase fold AMED_6420 PF00440 Bacterial regulatory proteins, tetR family AMED_6421 PF00107 Zinc-binding dehydrogenase AMED_6421 PF08240 Alcohol dehydrogenase GroES-like domain AMED_6426 PF00012 Hsp70 protein AMED_6429 PF01979 Amidohydrolase family AMED_6431 PF00331 Glycosyl hydrolase family 10 AMED_6431 PF00652 Ricin-type beta-trefoil lectin domain AMED_6432 PF00553 Cellulose binding domain AMED_6432 PF00331 Glycosyl hydrolase family 10 AMED_6437 PF01979 Amidohydrolase family AMED_6438 PF00067 Cytochrome P450 AMED_6443 PF00196 Bacterial regulatory proteins, luxR family AMED_6443 PF00072 Response regulator receiver domain AMED_6446 PF03704 Bacterial transcriptional activator domain AMED_6449 PF01757 Acyltransferase family AMED_6457 PF03704 Bacterial transcriptional activator domain AMED_6457 PF00931 NB-ARC domain AMED_6457 PF00486 Transcriptional regulatory protein, C terminal AMED_6463 PF00248 Aldo/keto reductase family AMED_6465 PF13191 AAA ATPase domain AMED_6465 PF00069 Protein kinase domain AMED_6466 PF00111 2Fe-2S iron-sulfur cluster binding domain AMED_6466 PF01799 [2Fe-2S] binding domain AMED_6468 PF00196 Bacterial regulatory proteins, luxR family AMED_6468 PF17874 MalT-like TPR region AMED_6469 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_6469 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_6469 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_6470 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus AMED_6471 PF00561 alpha/beta hydrolase fold AMED_6472 PF13193 AMP-binding enzyme C-terminal domain AMED_6472 PF00501 AMP-binding enzyme AMED_6473 PF00561 alpha/beta hydrolase fold AMED_6475 PF12697 Alpha/beta hydrolase family AMED_6476 PF00196 Bacterial regulatory proteins, luxR family AMED_6476 PF00072 Response regulator receiver domain AMED_6477 PF00196 Bacterial regulatory proteins, luxR family AMED_6478 PF07690 Major Facilitator Superfamily AMED_6481 PF07690 Major Facilitator Superfamily AMED_6481 PF00083 Sugar (and other) transporter AMED_6489 PF00005 ABC transporter AMED_6491 PF07730 Histidine kinase AMED_6491 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_6492 PF00196 Bacterial regulatory proteins, luxR family AMED_6492 PF00072 Response regulator receiver domain AMED_6495 PF09335 SNARE associated Golgi protein AMED_6497 PF02673 Bacitracin resistance protein BacA AMED_6503 PF00005 ABC transporter AMED_6505 PF07730 Histidine kinase AMED_6506 PF00196 Bacterial regulatory proteins, luxR family AMED_6506 PF00072 Response regulator receiver domain AMED_6510 PF00440 Bacterial regulatory proteins, tetR family AMED_6510 PF08359 YsiA-like protein, C-terminal region AMED_6511 PF01370 NAD dependent epimerase/dehydratase family AMED_6512 PF05368 NmrA-like family AMED_6515 PF07859 alpha/beta hydrolase fold AMED_6516 PF07859 alpha/beta hydrolase fold AMED_6517 PF07690 Major Facilitator Superfamily AMED_6518 PF00106 short chain dehydrogenase AMED_6522 PF01965 DJ-1/PfpI family AMED_6522 PF12833 Helix-turn-helix domain AMED_6527 PF00403 Heavy-metal-associated domain AMED_6529 PF08281 Sigma-70, region 4 AMED_6529 PF04542 Sigma-70 region 2 AMED_6530 PF04542 Sigma-70 region 2 AMED_6530 PF08281 Sigma-70, region 4 AMED_6532 PF01965 DJ-1/PfpI family AMED_6533 PF00005 ABC transporter AMED_6534 PF01032 FecCD transport family AMED_6537 PF00403 Heavy-metal-associated domain AMED_6558 PF00384 Molybdopterin oxidoreductase AMED_6558 PF01568 Molydopterin dinucleotide binding domain AMED_6558 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMED_6561 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AMED_6561 PF08240 Alcohol dehydrogenase GroES-like domain AMED_6563 PF00698 Acyl transferase domain AMED_6563 PF08240 Alcohol dehydrogenase GroES-like domain AMED_6563 PF09277 Erythronolide synthase, docking AMED_6563 PF00550 Phosphopantetheine attachment site AMED_6563 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_6563 PF16197 Ketoacyl-synthetase C-terminal extension AMED_6563 PF08659 KR domain AMED_6563 PF08990 Erythronolide synthase docking AMED_6563 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_6563 PF14765 Polyketide synthase dehydratase AMED_6566 PF00171 Aldehyde dehydrogenase family AMED_6568 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMED_6568 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMED_6568 PF00205 Thiamine pyrophosphate enzyme, central domain AMED_6569 PF13378 Enolase C-terminal domain-like AMED_6569 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMED_6570 PF01565 FAD binding domain AMED_6570 PF02913 FAD linked oxidases, C-terminal domain AMED_6570 PF13183 4Fe-4S dicluster domain AMED_6573 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMED_6573 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMED_6574 PF00871 Acetokinase family AMED_6575 PF09363 XFP C-terminal domain AMED_6575 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase AMED_6575 PF09364 XFP N-terminal domain AMED_6577 PF04454 Encapsulating protein for peroxidase AMED_6578 PF08240 Alcohol dehydrogenase GroES-like domain AMED_6578 PF13823 Alcohol dehydrogenase GroES-associated AMED_6578 PF00107 Zinc-binding dehydrogenase AMED_6581 PF03600 Citrate transporter AMED_6582 PF00005 ABC transporter AMED_6587 PF13662 Toprim domain AMED_6587 PF10410 DnaB-helicase binding domain of primase AMED_6587 PF01807 CHC2 zinc finger AMED_6587 PF08278 DNA primase DnaG DnaB-binding AMED_6587 PF08275 DNA primase catalytic core, N-terminal domain AMED_6588 PF08281 Sigma-70, region 4 AMED_6588 PF12680 SnoaL-like domain AMED_6588 PF04542 Sigma-70 region 2 AMED_6591 PF07690 Major Facilitator Superfamily AMED_6595 PF04978 Protein of unknown function (DUF664) AMED_6598 PF13286 Phosphohydrolase-associated domain AMED_6598 PF01966 HD domain AMED_6600 PF00072 Response regulator receiver domain AMED_6600 PF00196 Bacterial regulatory proteins, luxR family AMED_6601 PF07730 Histidine kinase AMED_6603 PF00005 ABC transporter AMED_6604 PF03129 Anticodon binding domain AMED_6604 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMED_6608 PF01022 Bacterial regulatory protein, arsR family AMED_6609 PF01475 Ferric uptake regulator family AMED_6612 PF03773 Predicted permease AMED_6614 PF01255 Putative undecaprenyl diphosphate synthase AMED_6615 PF11967 Recombination protein O N terminal AMED_6615 PF02565 Recombination protein O C terminal AMED_6617 PF06271 RDD family AMED_6621 PF07650 KH domain AMED_6621 PF01926 50S ribosome-binding GTPase AMED_6623 PF00571 CBS domain AMED_6623 PF03471 Transporter associated domain AMED_6623 PF01595 Cyclin M transmembrane N-terminal domain AMED_6624 PF02130 Uncharacterized protein family UPF0054 AMED_6625 PF02562 PhoH-like protein AMED_6626 PF01230 HIT domain AMED_6627 PF04452 RNA methyltransferase AMED_6628 PF00684 DnaJ central domain AMED_6628 PF00226 DnaJ domain AMED_6628 PF01556 DnaJ C terminal domain AMED_6629 PF01628 HrcA protein C terminal domain AMED_6634 PF00248 Aldo/keto reductase family AMED_6635 PF00171 Aldehyde dehydrogenase family AMED_6641 PF00512 His Kinase A (phospho-acceptor) domain AMED_6641 PF00672 HAMP domain AMED_6641 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_6642 PF00072 Response regulator receiver domain AMED_6642 PF00486 Transcriptional regulatory protein, C terminal AMED_6643 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AMED_6645 PF01979 Amidohydrolase family AMED_6647 PF00561 alpha/beta hydrolase fold AMED_6648 PF00144 Beta-lactamase AMED_6649 PF08021 Siderophore-interacting FAD-binding domain AMED_6649 PF04954 Siderophore-interacting protein AMED_6652 PF02909 Tetracyclin repressor-like, C-terminal domain AMED_6652 PF00440 Bacterial regulatory proteins, tetR family AMED_6653 PF08240 Alcohol dehydrogenase GroES-like domain AMED_6653 PF00107 Zinc-binding dehydrogenase AMED_6654 PF04055 Radical SAM superfamily AMED_6656 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMED_6656 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMED_6658 PF01507 Phosphoadenosine phosphosulfate reductase family AMED_6659 PF01507 Phosphoadenosine phosphosulfate reductase family AMED_6660 PF00009 Elongation factor Tu GTP binding domain AMED_6663 PF00183 Hsp90 protein AMED_6663 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_6666 PF00378 Enoyl-CoA hydratase/isomerase AMED_6667 PF01337 Barstar (barnase inhibitor) AMED_6668 PF00545 ribonuclease AMED_6670 PF00107 Zinc-binding dehydrogenase AMED_6670 PF08240 Alcohol dehydrogenase GroES-like domain AMED_6672 PF13520 Amino acid permease AMED_6673 PF03060 Nitronate monooxygenase AMED_6675 PF00728 Glycosyl hydrolase family 20, catalytic domain AMED_6675 PF02838 Glycosyl hydrolase family 20, domain 2 AMED_6681 PF00679 Elongation factor G C-terminus AMED_6681 PF06421 GTP-binding protein LepA C-terminus AMED_6681 PF00009 Elongation factor Tu GTP binding domain AMED_6682 PF01209 ubiE/COQ5 methyltransferase family AMED_6685 PF01649 Ribosomal protein S20 AMED_6687 PF00291 Pyridoxal-phosphate dependent enzyme AMED_6689 PF03772 Competence protein AMED_6689 PF00753 Metallo-beta-lactamase superfamily AMED_6689 PF13567 Domain of unknown function (DUF4131) AMED_6691 PF02645 Uncharacterised protein, DegV family COG1307 AMED_6693 PF00300 Histidine phosphatase superfamily (branch 1) AMED_6695 PF01467 Cytidylyltransferase-like AMED_6696 PF00270 DEAD/DEAH box helicase AMED_6696 PF00570 HRDC domain AMED_6696 PF16124 RecQ zinc-binding AMED_6696 PF09382 RQC domain AMED_6696 PF00271 Helicase conserved C-terminal domain AMED_6697 PF00083 Sugar (and other) transporter AMED_6698 PF00750 tRNA synthetases class I (R) AMED_6698 PF05746 DALR anticodon binding domain AMED_6698 PF03485 Arginyl tRNA synthetase N terminal domain AMED_6701 PF00440 Bacterial regulatory proteins, tetR family AMED_6701 PF16859 Tetracyclin repressor-like, C-terminal domain AMED_6703 PF00696 Amino acid kinase family AMED_6703 PF01472 PUA domain AMED_6704 PF01926 50S ribosome-binding GTPase AMED_6704 PF09269 Domain of unknown function (DUF1967) AMED_6704 PF01018 GTP1/OBG AMED_6705 PF01016 Ribosomal L27 protein AMED_6706 PF00829 Ribosomal prokaryotic L21 protein AMED_6707 PF10150 Ribonuclease E/G family AMED_6707 PF10150 Ribonuclease E/G family AMED_6708 PF00082 Subtilase family AMED_6709 PF01061 ABC-2 type transporter AMED_6711 PF00005 ABC transporter AMED_6714 PF00334 Nucleoside diphosphate kinase AMED_6716 PF01804 Penicillin amidase AMED_6718 PF08245 Mur ligase middle domain AMED_6718 PF02875 Mur ligase family, glutamate ligase domain AMED_6719 PF08241 Methyltransferase domain AMED_6720 PF13472 GDSL-like Lipase/Acylhydrolase family AMED_6722 PF12697 Alpha/beta hydrolase family AMED_6723 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_6723 PF03466 LysR substrate binding domain AMED_6724 PF08264 Anticodon-binding domain of tRNA AMED_6724 PF10458 Valyl tRNA synthetase tRNA binding arm AMED_6724 PF00133 tRNA synthetases class I (I, L, M and V) AMED_6726 PF12802 MarR family AMED_6727 PF07690 Major Facilitator Superfamily AMED_6728 PF00384 Molybdopterin oxidoreductase AMED_6728 PF01568 Molydopterin dinucleotide binding domain AMED_6730 PF13399 LytR cell envelope-related transcriptional attenuator AMED_6730 PF03816 Cell envelope-related transcriptional attenuator domain AMED_6733 PF02634 FdhD/NarQ family AMED_6734 PF03055 Retinal pigment epithelial membrane protein AMED_6739 PF07724 AAA domain (Cdc48 subfamily) AMED_6739 PF10431 C-terminal, D2-small domain, of ClpB protein AMED_6739 PF06689 ClpX C4-type zinc finger AMED_6740 PF00574 Clp protease AMED_6741 PF00574 Clp protease AMED_6742 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMED_6742 PF05698 Bacterial trigger factor protein (TF) C-terminus AMED_6742 PF05697 Bacterial trigger factor protein (TF) AMED_6744 PF00111 2Fe-2S iron-sulfur cluster binding domain AMED_6744 PF00970 Oxidoreductase FAD-binding domain AMED_6744 PF00175 Oxidoreductase NAD-binding domain AMED_6746 PF00512 His Kinase A (phospho-acceptor) domain AMED_6746 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_6746 PF00672 HAMP domain AMED_6747 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase AMED_6750 PF00586 AIR synthase related protein, N-terminal domain AMED_6750 PF02769 AIR synthase related protein, C-terminal domain AMED_6751 PF00692 dUTPase AMED_6759 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase AMED_6767 PF03704 Bacterial transcriptional activator domain AMED_6767 PF00931 NB-ARC domain AMED_6767 PF00486 Transcriptional regulatory protein, C terminal AMED_6769 PF07971 Glycosyl hydrolase family 92 AMED_6769 PF17678 Glycosyl hydrolase family 92 N-terminal domain AMED_6770 PF13382 Adenine deaminase C-terminal domain AMED_6770 PF01979 Amidohydrolase family AMED_6772 PF00005 ABC transporter AMED_6772 PF13732 Domain of unknown function (DUF4162) AMED_6773 PF17933 Tetracyclin repressor-like, C-terminal domain AMED_6773 PF00440 Bacterial regulatory proteins, tetR family AMED_6775 PF00480 ROK family AMED_6776 PF01261 Xylose isomerase-like TIM barrel AMED_6779 PF07690 Major Facilitator Superfamily AMED_6780 PF00248 Aldo/keto reductase family AMED_6785 PF01965 DJ-1/PfpI family AMED_6786 PF07228 Stage II sporulation protein E (SpoIIE) AMED_6786 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain AMED_6787 PF09308 LuxQ, periplasmic AMED_6787 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_6787 PF00072 Response regulator receiver domain AMED_6787 PF00512 His Kinase A (phospho-acceptor) domain AMED_6792 PF01381 Helix-turn-helix AMED_6796 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_6796 PF03466 LysR substrate binding domain AMED_6800 PF00296 Luciferase-like monooxygenase AMED_6803 PF01638 HxlR-like helix-turn-helix AMED_6804 PF16499 Alpha galactosidase A AMED_6804 PF17801 Alpha galactosidase C-terminal beta sandwich domain AMED_6805 PF12680 SnoaL-like domain AMED_6806 PF00296 Luciferase-like monooxygenase AMED_6809 PF00118 TCP-1/cpn60 chaperonin family AMED_6810 PF06827 Zinc finger found in FPG and IleRS AMED_6810 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMED_6810 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AMED_6811 PF02502 Ribose/Galactose Isomerase AMED_6814 PF01323 DSBA-like thioredoxin domain AMED_6815 PF11838 ERAP1-like C-terminal domain AMED_6815 PF01433 Peptidase family M1 domain AMED_6817 PF17174 Domain of unknown function (DUF5130) AMED_6821 PF00924 Mechanosensitive ion channel AMED_6822 PF01152 Bacterial-like globin AMED_6823 PF00128 Alpha amylase, catalytic domain AMED_6827 PF05088 Bacterial NAD-glutamate dehydrogenase AMED_6829 PF00005 ABC transporter AMED_6829 PF12848 ABC transporter AMED_6830 PF05425 Copper resistance protein D AMED_6830 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) AMED_6833 PF07690 Major Facilitator Superfamily AMED_6836 PF00202 Aminotransferase class-III AMED_6837 PF00732 GMC oxidoreductase AMED_6837 PF05199 GMC oxidoreductase AMED_6841 PF05199 GMC oxidoreductase AMED_6841 PF00732 GMC oxidoreductase AMED_6844 PF00578 AhpC/TSA family AMED_6848 PF00171 Aldehyde dehydrogenase family AMED_6849 PF07690 Major Facilitator Superfamily AMED_6850 PF06441 Epoxide hydrolase N terminus AMED_6854 PF01494 FAD binding domain AMED_6859 PF01039 Carboxyl transferase domain AMED_6861 PF16363 GDP-mannose 4,6 dehydratase AMED_6862 PF01613 Flavin reductase like domain AMED_6864 PF16197 Ketoacyl-synthetase C-terminal extension AMED_6864 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_6864 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_6864 PF00698 Acyl transferase domain AMED_6864 PF08659 KR domain AMED_6864 PF00550 Phosphopantetheine attachment site AMED_6865 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AMED_6865 PF08608 Wyosine base formation AMED_6867 PF05199 GMC oxidoreductase AMED_6869 PF00067 Cytochrome P450 AMED_6874 PF12833 Helix-turn-helix domain AMED_6876 PF01638 HxlR-like helix-turn-helix AMED_6877 PF08281 Sigma-70, region 4 AMED_6877 PF04542 Sigma-70 region 2 AMED_6878 PF03795 YCII-related domain AMED_6880 PF01300 Telomere recombination AMED_6883 PF00196 Bacterial regulatory proteins, luxR family AMED_6883 PF00072 Response regulator receiver domain AMED_6885 PF12833 Helix-turn-helix domain AMED_6885 PF02311 AraC-like ligand binding domain AMED_6886 PF00196 Bacterial regulatory proteins, luxR family AMED_6886 PF00072 Response regulator receiver domain AMED_6887 PF07730 Histidine kinase AMED_6887 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_6890 PF01638 HxlR-like helix-turn-helix AMED_6896 PF02583 Metal-sensitive transcriptional repressor AMED_6897 PF00403 Heavy-metal-associated domain AMED_6899 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMED_6900 PF00561 alpha/beta hydrolase fold AMED_6901 PF00106 short chain dehydrogenase AMED_6904 PF04055 Radical SAM superfamily AMED_6909 PF07859 alpha/beta hydrolase fold AMED_6913 PF00072 Response regulator receiver domain AMED_6913 PF00486 Transcriptional regulatory protein, C terminal AMED_6914 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_6914 PF00672 HAMP domain AMED_6914 PF00512 His Kinase A (phospho-acceptor) domain AMED_6916 PF00356 Bacterial regulatory proteins, lacI family AMED_6917 PF13416 Bacterial extracellular solute-binding protein AMED_6918 PF00528 Binding-protein-dependent transport system inner membrane component AMED_6919 PF00528 Binding-protein-dependent transport system inner membrane component AMED_6921 PF00486 Transcriptional regulatory protein, C terminal AMED_6921 PF03704 Bacterial transcriptional activator domain AMED_6921 PF00931 NB-ARC domain AMED_6923 PF00733 Asparagine synthase AMED_6923 PF13537 Glutamine amidotransferase domain AMED_6925 PF00480 ROK family AMED_6929 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_6929 PF03466 LysR substrate binding domain AMED_6934 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMED_6934 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_6937 PF00356 Bacterial regulatory proteins, lacI family AMED_6941 PF00486 Transcriptional regulatory protein, C terminal AMED_6941 PF00072 Response regulator receiver domain AMED_6942 PF00512 His Kinase A (phospho-acceptor) domain AMED_6942 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_6944 PF13520 Amino acid permease AMED_6945 PF00795 Carbon-nitrogen hydrolase AMED_6946 PF01593 Flavin containing amine oxidoreductase AMED_6949 PF00561 alpha/beta hydrolase fold AMED_6951 PF17853 GGDEF-like domain AMED_6951 PF13556 PucR C-terminal helix-turn-helix domain AMED_6951 PF05651 Putative sugar diacid recognition AMED_6955 PF02803 Thiolase, C-terminal domain AMED_6955 PF00108 Thiolase, N-terminal domain AMED_6956 PF13193 AMP-binding enzyme C-terminal domain AMED_6956 PF00501 AMP-binding enzyme AMED_6957 PF03055 Retinal pigment epithelial membrane protein AMED_6958 PF01638 HxlR-like helix-turn-helix AMED_6961 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_6961 PF03466 LysR substrate binding domain AMED_6963 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMED_6963 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AMED_6965 PF03301 Tryptophan 2,3-dioxygenase AMED_6967 PF02633 Creatinine amidohydrolase AMED_6968 PF00501 AMP-binding enzyme AMED_6968 PF13193 AMP-binding enzyme C-terminal domain AMED_6970 PF00378 Enoyl-CoA hydratase/isomerase AMED_6978 PF00106 short chain dehydrogenase AMED_6980 PF00196 Bacterial regulatory proteins, luxR family AMED_6982 PF00501 AMP-binding enzyme AMED_6982 PF13193 AMP-binding enzyme C-terminal domain AMED_6985 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AMED_6985 PF00270 DEAD/DEAH box helicase AMED_6985 PF00271 Helicase conserved C-terminal domain AMED_6985 PF04408 Helicase associated domain (HA2) AMED_6985 PF11898 Domain of unknown function (DUF3418) AMED_6987 PF01070 FMN-dependent dehydrogenase AMED_6988 PF03435 Saccharopine dehydrogenase NADP binding domain AMED_6989 PF00743 Flavin-binding monooxygenase-like AMED_6991 PF01374 Glycosyl hydrolase family 46 AMED_6992 PF02811 PHP domain AMED_6992 PF14716 Helix-hairpin-helix domain AMED_6992 PF14791 DNA polymerase beta thumb AMED_6994 PF00392 Bacterial regulatory proteins, gntR family AMED_6994 PF07729 FCD domain AMED_6995 PF00920 Dehydratase family AMED_6999 PF00990 Diguanylate cyclase, GGDEF domain AMED_7001 PF00291 Pyridoxal-phosphate dependent enzyme AMED_7002 PF01738 Dienelactone hydrolase family AMED_7004 PF08281 Sigma-70, region 4 AMED_7004 PF04542 Sigma-70 region 2 AMED_7008 PF01176 Translation initiation factor 1A / IF-1 AMED_7011 PF00155 Aminotransferase class I and II AMED_7011 PF00392 Bacterial regulatory proteins, gntR family AMED_7013 PF06827 Zinc finger found in FPG and IleRS AMED_7013 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AMED_7013 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMED_7014 PF02585 GlcNAc-PI de-N-acetylase AMED_7015 PF00596 Class II Aldolase and Adducin N-terminal domain AMED_7015 PF01008 Initiation factor 2 subunit family AMED_7018 PF00067 Cytochrome P450 AMED_7019 PF03551 Transcriptional regulator PadR-like family AMED_7019 PF10400 Virulence activator alpha C-term AMED_7020 PF00067 Cytochrome P450 AMED_7021 PF00456 Transketolase, thiamine diphosphate binding domain AMED_7022 PF00440 Bacterial regulatory proteins, tetR family AMED_7022 PF17932 Tetracyclin repressor-like, C-terminal domain AMED_7023 PF13183 4Fe-4S dicluster domain AMED_7023 PF01565 FAD binding domain AMED_7023 PF02913 FAD linked oxidases, C-terminal domain AMED_7025 PF00196 Bacterial regulatory proteins, luxR family AMED_7025 PF00072 Response regulator receiver domain AMED_7027 PF00005 ABC transporter AMED_7028 PF00005 ABC transporter AMED_7028 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMED_7029 PF02653 Branched-chain amino acid transport system / permease component AMED_7030 PF02653 Branched-chain amino acid transport system / permease component AMED_7033 PF13302 Acetyltransferase (GNAT) domain AMED_7034 PF07971 Glycosyl hydrolase family 92 AMED_7034 PF17678 Glycosyl hydrolase family 92 N-terminal domain AMED_7035 PF09186 Domain of unknown function (DUF1949) AMED_7035 PF01205 Uncharacterized protein family UPF0029 AMED_7036 PF00310 Glutamine amidotransferases class-II AMED_7036 PF01645 Conserved region in glutamate synthase AMED_7036 PF04898 Glutamate synthase central domain AMED_7036 PF01493 GXGXG motif AMED_7037 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AMED_7037 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_7038 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family AMED_7039 PF00440 Bacterial regulatory proteins, tetR family AMED_7041 PF00480 ROK family AMED_7044 PF07685 CobB/CobQ-like glutamine amidotransferase domain AMED_7044 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMED_7045 PF03186 CobD/Cbib protein AMED_7046 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AMED_7047 PF02277 Phosphoribosyltransferase AMED_7048 PF02654 Cobalamin-5-phosphate synthase AMED_7049 PF13280 WYL domain AMED_7049 PF08279 HTH domain AMED_7051 PF00155 Aminotransferase class I and II AMED_7052 PF07685 CobB/CobQ-like glutamine amidotransferase domain AMED_7052 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMED_7054 PF17863 AAA lid domain AMED_7054 PF07728 AAA domain (dynein-related subfamily) AMED_7054 PF13519 von Willebrand factor type A domain AMED_7055 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMED_7056 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMED_7057 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMED_7057 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMED_7058 PF02571 Precorrin-6x reductase CbiJ/CobK AMED_7059 PF00881 Nitroreductase family AMED_7060 PF14896 EmbC C-terminal domain AMED_7060 PF17689 Arabinosyltransferase concanavalin like domain AMED_7060 PF04602 Mycobacterial cell wall arabinan synthesis protein AMED_7061 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMED_7062 PF02570 Precorrin-8X methylmutase AMED_7065 PF00005 ABC transporter AMED_7067 PF01381 Helix-turn-helix AMED_7069 PF02514 CobN/Magnesium Chelatase AMED_7071 PF01872 RibD C-terminal domain AMED_7071 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMED_7074 PF00171 Aldehyde dehydrogenase family AMED_7079 PF13180 PDZ domain AMED_7079 PF00595 PDZ domain AMED_7081 PF05872 Bacterial protein of unknown function (DUF853) AMED_7082 PF00929 Exonuclease AMED_7083 PF00083 Sugar (and other) transporter AMED_7083 PF08946 Osmosensory transporter coiled coil AMED_7084 PF17964 Bacterial Ig domain AMED_7084 PF03734 L,D-transpeptidase catalytic domain AMED_7085 PF00589 Phage integrase family AMED_7085 PF02899 Phage integrase, N-terminal SAM-like domain AMED_7087 PF01555 DNA methylase AMED_7088 PF01555 DNA methylase AMED_7101 PF01494 FAD binding domain AMED_7115 PF00293 NUDIX domain AMED_7120 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_7120 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_7120 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_7121 PF00107 Zinc-binding dehydrogenase AMED_7121 PF08240 Alcohol dehydrogenase GroES-like domain AMED_7122 PF02780 Transketolase, C-terminal domain AMED_7122 PF02779 Transketolase, pyrimidine binding domain AMED_7123 PF13193 AMP-binding enzyme C-terminal domain AMED_7123 PF00501 AMP-binding enzyme AMED_7125 PF00378 Enoyl-CoA hydratase/isomerase AMED_7129 PF07690 Major Facilitator Superfamily AMED_7131 PF03328 HpcH/HpaI aldolase/citrate lyase family AMED_7132 PF00296 Luciferase-like monooxygenase AMED_7133 PF07729 FCD domain AMED_7133 PF00392 Bacterial regulatory proteins, gntR family AMED_7134 PF00171 Aldehyde dehydrogenase family AMED_7135 PF02515 CoA-transferase family III AMED_7139 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_7141 PF00067 Cytochrome P450 AMED_7143 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_7143 PF14759 Reductase C-terminal AMED_7144 PF00106 short chain dehydrogenase AMED_7145 PF02627 Carboxymuconolactone decarboxylase family AMED_7147 PF00440 Bacterial regulatory proteins, tetR family AMED_7149 PF08240 Alcohol dehydrogenase GroES-like domain AMED_7149 PF00107 Zinc-binding dehydrogenase AMED_7154 PF00005 ABC transporter AMED_7155 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMED_7155 PF00005 ABC transporter AMED_7158 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_7158 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_7158 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_7159 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_7159 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_7159 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_7160 PF00106 short chain dehydrogenase AMED_7161 PF07729 FCD domain AMED_7161 PF00392 Bacterial regulatory proteins, gntR family AMED_7164 PF00107 Zinc-binding dehydrogenase AMED_7164 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_7164 PF08659 KR domain AMED_7164 PF08240 Alcohol dehydrogenase GroES-like domain AMED_7164 PF00698 Acyl transferase domain AMED_7164 PF00550 Phosphopantetheine attachment site AMED_7164 PF14765 Polyketide synthase dehydratase AMED_7164 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_7164 PF16197 Ketoacyl-synthetase C-terminal extension AMED_7165 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_7165 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_7165 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_7166 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_7166 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_7166 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_7168 PF00067 Cytochrome P450 AMED_7169 PF00378 Enoyl-CoA hydratase/isomerase AMED_7171 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_7171 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_7171 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_7174 PF02515 CoA-transferase family III AMED_7182 PF00890 FAD binding domain AMED_7183 PF01614 Bacterial transcriptional regulator AMED_7183 PF09339 IclR helix-turn-helix domain AMED_7184 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_7185 PF00561 alpha/beta hydrolase fold AMED_7186 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AMED_7187 PF01613 Flavin reductase like domain AMED_7189 PF01243 Pyridoxamine 5'-phosphate oxidase AMED_7189 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AMED_7190 PF00108 Thiolase, N-terminal domain AMED_7190 PF02803 Thiolase, C-terminal domain AMED_7191 PF02515 CoA-transferase family III AMED_7192 PF00378 Enoyl-CoA hydratase/isomerase AMED_7193 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_7193 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_7193 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_7194 PF00106 short chain dehydrogenase AMED_7197 PF00501 AMP-binding enzyme AMED_7197 PF13193 AMP-binding enzyme C-terminal domain AMED_7199 PF00378 Enoyl-CoA hydratase/isomerase AMED_7200 PF02803 Thiolase, C-terminal domain AMED_7200 PF00108 Thiolase, N-terminal domain AMED_7201 PF00378 Enoyl-CoA hydratase/isomerase AMED_7204 PF02515 CoA-transferase family III AMED_7205 PF00378 Enoyl-CoA hydratase/isomerase AMED_7207 PF00809 Pterin binding enzyme AMED_7209 PF00171 Aldehyde dehydrogenase family AMED_7211 PF00067 Cytochrome P450 AMED_7213 PF14759 Reductase C-terminal AMED_7213 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_7214 PF00106 short chain dehydrogenase AMED_7215 PF00743 Flavin-binding monooxygenase-like AMED_7216 PF00743 Flavin-binding monooxygenase-like AMED_7220 PF00857 Isochorismatase family AMED_7223 PF00440 Bacterial regulatory proteins, tetR family AMED_7223 PF08361 MAATS-type transcriptional repressor, C-terminal region AMED_7225 PF02779 Transketolase, pyrimidine binding domain AMED_7225 PF02780 Transketolase, C-terminal domain AMED_7228 PF00067 Cytochrome P450 AMED_7229 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_7229 PF14759 Reductase C-terminal AMED_7231 PF00107 Zinc-binding dehydrogenase AMED_7231 PF08240 Alcohol dehydrogenase GroES-like domain AMED_7233 PF07730 Histidine kinase AMED_7234 PF00072 Response regulator receiver domain AMED_7234 PF00196 Bacterial regulatory proteins, luxR family AMED_7235 PF00501 AMP-binding enzyme AMED_7236 PF00501 AMP-binding enzyme AMED_7238 PF13378 Enolase C-terminal domain-like AMED_7238 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMED_7239 PF07690 Major Facilitator Superfamily AMED_7246 PF00596 Class II Aldolase and Adducin N-terminal domain AMED_7247 PF00083 Sugar (and other) transporter AMED_7247 PF07690 Major Facilitator Superfamily AMED_7253 PF03928 Haem-degrading AMED_7254 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMED_7254 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMED_7256 PF00356 Bacterial regulatory proteins, lacI family AMED_7257 PF01547 Bacterial extracellular solute-binding protein AMED_7258 PF00528 Binding-protein-dependent transport system inner membrane component AMED_7259 PF00528 Binding-protein-dependent transport system inner membrane component AMED_7261 PF00561 alpha/beta hydrolase fold AMED_7262 PF00392 Bacterial regulatory proteins, gntR family AMED_7262 PF07729 FCD domain AMED_7263 PF00561 alpha/beta hydrolase fold AMED_7266 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMED_7266 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMED_7267 PF07691 PA14 domain AMED_7267 PF14310 Fibronectin type III-like domain AMED_7267 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMED_7267 PF00933 Glycosyl hydrolase family 3 N terminal domain AMED_7268 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMED_7268 PF01842 ACT domain AMED_7268 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMED_7269 PF02558 Ketopantoate reductase PanE/ApbA AMED_7269 PF08546 Ketopantoate reductase PanE/ApbA C terminal AMED_7270 PF00378 Enoyl-CoA hydratase/isomerase AMED_7270 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMED_7270 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMED_7271 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AMED_7271 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AMED_7274 PF02515 CoA-transferase family III AMED_7275 PF02798 Glutathione S-transferase, N-terminal domain AMED_7275 PF00043 Glutathione S-transferase, C-terminal domain AMED_7277 PF07690 Major Facilitator Superfamily AMED_7278 PF05681 Fumarate hydratase (Fumerase) AMED_7280 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMED_7280 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMED_7291 PF02195 ParB-like nuclease domain AMED_7291 PF17762 HTH domain found in ParB protein AMED_7294 PF11774 Lsr2 AMED_7313 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_7315 PF00809 Pterin binding enzyme AMED_7323 PF06114 IrrE N-terminal-like domain AMED_7328 PF01370 NAD dependent epimerase/dehydratase family AMED_7334 PF04055 Radical SAM superfamily AMED_7335 PF04055 Radical SAM superfamily AMED_7336 PF00296 Luciferase-like monooxygenase AMED_7338 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMED_7338 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AMED_7338 PF12833 Helix-turn-helix domain AMED_7338 PF02805 Metal binding domain of Ada AMED_7339 PF00067 Cytochrome P450 AMED_7340 PF04542 Sigma-70 region 2 AMED_7340 PF08281 Sigma-70, region 4 AMED_7340 PF12680 SnoaL-like domain AMED_7341 PF08031 Berberine and berberine like AMED_7341 PF01565 FAD binding domain AMED_7342 PF00296 Luciferase-like monooxygenase AMED_7344 PF07690 Major Facilitator Superfamily AMED_7355 PF12833 Helix-turn-helix domain AMED_7355 PF12852 Cupin AMED_7357 PF00156 Phosphoribosyl transferase domain AMED_7362 PF00528 Binding-protein-dependent transport system inner membrane component AMED_7363 PF00528 Binding-protein-dependent transport system inner membrane component AMED_7364 PF00005 ABC transporter AMED_7365 PF12849 PBP superfamily domain AMED_7368 PF00440 Bacterial regulatory proteins, tetR family AMED_7369 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_7369 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AMED_7373 PF01425 Amidase AMED_7376 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_7376 PF03466 LysR substrate binding domain AMED_7379 PF14310 Fibronectin type III-like domain AMED_7379 PF00933 Glycosyl hydrolase family 3 N terminal domain AMED_7379 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMED_7380 PF01370 NAD dependent epimerase/dehydratase family AMED_7380 PF08338 Domain of unknown function (DUF1731) AMED_7382 PF00150 Cellulase (glycosyl hydrolase family 5) AMED_7384 PF00005 ABC transporter AMED_7385 PF02018 Carbohydrate binding domain AMED_7385 PF00759 Glycosyl hydrolase family 9 AMED_7385 PF02927 Cellulase N-terminal ig-like domain AMED_7386 PF17801 Alpha galactosidase C-terminal beta sandwich domain AMED_7386 PF16499 Alpha galactosidase A AMED_7395 PF00534 Glycosyl transferases group 1 AMED_7399 PF00534 Glycosyl transferases group 1 AMED_7399 PF13439 Glycosyltransferase Family 4 AMED_7400 PF00534 Glycosyl transferases group 1 AMED_7400 PF13439 Glycosyltransferase Family 4 AMED_7402 PF02397 Bacterial sugar transferase AMED_7403 PF00535 Glycosyl transferase family 2 AMED_7405 PF02350 UDP-N-acetylglucosamine 2-epimerase AMED_7409 PF13229 Right handed beta helix region AMED_7410 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMED_7410 PF16355 Domain of unknown function (DUF4982) AMED_7410 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 AMED_7410 PF00703 Glycosyl hydrolases family 2 AMED_7410 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMED_7411 PF18370 Rhamnogalacturonan I lyases beta-sheet domain AMED_7413 PF02013 Cellulose or protein binding domain AMED_7413 PF00150 Cellulase (glycosyl hydrolase family 5) AMED_7414 PF07745 Glycosyl hydrolase family 53 AMED_7417 PF00528 Binding-protein-dependent transport system inner membrane component AMED_7418 PF00528 Binding-protein-dependent transport system inner membrane component AMED_7423 PF01740 STAS domain AMED_7426 PF12697 Alpha/beta hydrolase family AMED_7427 PF00672 HAMP domain AMED_7427 PF07228 Stage II sporulation protein E (SpoIIE) AMED_7429 PF00701 Dihydrodipicolinate synthetase family AMED_7430 PF03466 LysR substrate binding domain AMED_7430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_7431 PF01209 ubiE/COQ5 methyltransferase family AMED_7433 PF01380 SIS domain AMED_7435 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_7435 PF14759 Reductase C-terminal AMED_7438 PF00067 Cytochrome P450 AMED_7441 PF00248 Aldo/keto reductase family AMED_7442 PF00296 Luciferase-like monooxygenase AMED_7445 PF00942 Cellulose binding domain AMED_7445 PF00041 Fibronectin type III domain AMED_7445 PF00553 Cellulose binding domain AMED_7445 PF00759 Glycosyl hydrolase family 9 AMED_7446 PF01336 OB-fold nucleic acid binding domain AMED_7446 PF02811 PHP domain AMED_7446 PF07733 Bacterial DNA polymerase III alpha NTPase domain AMED_7446 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AMED_7446 PF14579 Helix-hairpin-helix motif AMED_7447 PF04542 Sigma-70 region 2 AMED_7447 PF08281 Sigma-70, region 4 AMED_7448 PF03795 YCII-related domain AMED_7450 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AMED_7450 PF01276 Orn/Lys/Arg decarboxylase, major domain AMED_7450 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AMED_7453 PF04072 Leucine carboxyl methyltransferase AMED_7454 PF00561 alpha/beta hydrolase fold AMED_7455 PF00392 Bacterial regulatory proteins, gntR family AMED_7456 PF00005 ABC transporter AMED_7460 PF10503 Esterase PHB depolymerase AMED_7461 PF00404 Dockerin type I domain AMED_7461 PF00657 GDSL-like Lipase/Acylhydrolase AMED_7463 PF00210 Ferritin-like domain AMED_7465 PF03707 Bacterial signalling protein N terminal repeat AMED_7465 PF00990 Diguanylate cyclase, GGDEF domain AMED_7465 PF00563 EAL domain AMED_7468 PF03259 Roadblock/LC7 domain AMED_7472 PF16363 GDP-mannose 4,6 dehydratase AMED_7473 PF02566 OsmC-like protein AMED_7475 PF00561 alpha/beta hydrolase fold AMED_7476 PF00196 Bacterial regulatory proteins, luxR family AMED_7477 PF07519 Tannase and feruloyl esterase AMED_7478 PF00248 Aldo/keto reductase family AMED_7479 PF01979 Amidohydrolase family AMED_7479 PF13382 Adenine deaminase C-terminal domain AMED_7483 PF01301 Glycosyl hydrolases family 35 AMED_7484 PF06964 Alpha-L-arabinofuranosidase C-terminal domain AMED_7486 PF00528 Binding-protein-dependent transport system inner membrane component AMED_7487 PF00528 Binding-protein-dependent transport system inner membrane component AMED_7488 PF00356 Bacterial regulatory proteins, lacI family AMED_7492 PF01738 Dienelactone hydrolase family AMED_7493 PF00107 Zinc-binding dehydrogenase AMED_7493 PF08240 Alcohol dehydrogenase GroES-like domain AMED_7494 PF02909 Tetracyclin repressor-like, C-terminal domain AMED_7494 PF00440 Bacterial regulatory proteins, tetR family AMED_7496 PF02469 Fasciclin domain AMED_7498 PF10099 Anti-sigma-K factor rskA AMED_7499 PF04542 Sigma-70 region 2 AMED_7499 PF04545 Sigma-70, region 4 AMED_7500 PF04686 Streptomyces sporulation and cell division protein, SsgA AMED_7501 PF13193 AMP-binding enzyme C-terminal domain AMED_7501 PF00501 AMP-binding enzyme AMED_7502 PF00920 Dehydratase family AMED_7503 PF05173 Dihydrodipicolinate reductase, C-terminus AMED_7503 PF01113 Dihydrodipicolinate reductase, N-terminus AMED_7505 PF00732 GMC oxidoreductase AMED_7505 PF05199 GMC oxidoreductase AMED_7508 PF04542 Sigma-70 region 2 AMED_7508 PF08281 Sigma-70, region 4 AMED_7510 PF08281 Sigma-70, region 4 AMED_7510 PF04542 Sigma-70 region 2 AMED_7513 PF01979 Amidohydrolase family AMED_7514 PF03707 Bacterial signalling protein N terminal repeat AMED_7514 PF00563 EAL domain AMED_7514 PF00990 Diguanylate cyclase, GGDEF domain AMED_7515 PF04199 Putative cyclase AMED_7519 PF00704 Glycosyl hydrolases family 18 AMED_7519 PF00553 Cellulose binding domain AMED_7519 PF00041 Fibronectin type III domain AMED_7522 PF13302 Acetyltransferase (GNAT) domain AMED_7523 PF04075 F420H(2)-dependent quinone reductase AMED_7524 PF01209 ubiE/COQ5 methyltransferase family AMED_7525 PF07905 Purine catabolism regulatory protein-like family AMED_7525 PF13556 PucR C-terminal helix-turn-helix domain AMED_7525 PF17853 GGDEF-like domain AMED_7527 PF13443 Cro/C1-type HTH DNA-binding domain AMED_7529 PF11271 Porin PorA AMED_7530 PF08241 Methyltransferase domain AMED_7531 PF00534 Glycosyl transferases group 1 AMED_7531 PF08323 Starch synthase catalytic domain AMED_7536 PF11847 Alpha-(1->3)-arabinofuranosyltransferase AMED_7541 PF00392 Bacterial regulatory proteins, gntR family AMED_7542 PF02627 Carboxymuconolactone decarboxylase family AMED_7543 PF07690 Major Facilitator Superfamily AMED_7544 PF07690 Major Facilitator Superfamily AMED_7547 PF17820 PDZ domain AMED_7547 PF13180 PDZ domain AMED_7548 PF16350 FAD dependent oxidoreductase central domain AMED_7548 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMED_7548 PF01266 FAD dependent oxidoreductase AMED_7548 PF01571 Aminomethyltransferase folate-binding domain AMED_7549 PF00551 Formyl transferase AMED_7551 PF01571 Aminomethyltransferase folate-binding domain AMED_7551 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_7551 PF17806 Sarcosine oxidase A3 domain AMED_7551 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMED_7552 PF04267 Sarcosine oxidase, delta subunit family AMED_7553 PF01266 FAD dependent oxidoreductase AMED_7554 PF00464 Serine hydroxymethyltransferase AMED_7555 PF07729 FCD domain AMED_7555 PF00392 Bacterial regulatory proteins, gntR family AMED_7556 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AMED_7556 PF00355 Rieske [2Fe-2S] domain AMED_7557 PF00440 Bacterial regulatory proteins, tetR family AMED_7560 PF05199 GMC oxidoreductase AMED_7560 PF00732 GMC oxidoreductase AMED_7562 PF00355 Rieske [2Fe-2S] domain AMED_7563 PF14759 Reductase C-terminal AMED_7563 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_7565 PF00561 alpha/beta hydrolase fold AMED_7569 PF00364 Biotin-requiring enzyme AMED_7569 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMED_7569 PF02817 e3 binding domain AMED_7570 PF02779 Transketolase, pyrimidine binding domain AMED_7570 PF02780 Transketolase, C-terminal domain AMED_7571 PF00676 Dehydrogenase E1 component AMED_7574 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMED_7574 PF14310 Fibronectin type III-like domain AMED_7574 PF00933 Glycosyl hydrolase family 3 N terminal domain AMED_7577 PF00072 Response regulator receiver domain AMED_7577 PF00486 Transcriptional regulatory protein, C terminal AMED_7578 PF16736 Single Cache-like AMED_7578 PF00989 PAS fold AMED_7578 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_7578 PF00512 His Kinase A (phospho-acceptor) domain AMED_7579 PF01494 FAD binding domain AMED_7581 PF02018 Carbohydrate binding domain AMED_7581 PF00704 Glycosyl hydrolases family 18 AMED_7581 PF00041 Fibronectin type III domain AMED_7583 PF00069 Protein kinase domain AMED_7583 PF03793 PASTA domain AMED_7587 PF01022 Bacterial regulatory protein, arsR family AMED_7589 PF04261 Dyp-type peroxidase family AMED_7590 PF05506 Domain of unknown function (DUF756) AMED_7590 PF04185 Phosphoesterase family AMED_7593 PF00072 Response regulator receiver domain AMED_7594 PF00360 Phytochrome region AMED_7594 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_7594 PF08446 PAS fold AMED_7594 PF01590 GAF domain AMED_7594 PF00512 His Kinase A (phospho-acceptor) domain AMED_7595 PF00486 Transcriptional regulatory protein, C terminal AMED_7595 PF00072 Response regulator receiver domain AMED_7604 PF12697 Alpha/beta hydrolase family AMED_7605 PF13556 PucR C-terminal helix-turn-helix domain AMED_7605 PF17853 GGDEF-like domain AMED_7607 PF14765 Polyketide synthase dehydratase AMED_7607 PF00550 Phosphopantetheine attachment site AMED_7607 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_7607 PF16197 Ketoacyl-synthetase C-terminal extension AMED_7607 PF08659 KR domain AMED_7607 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_7607 PF00698 Acyl transferase domain AMED_7612 PF02470 MlaD protein AMED_7617 PF02405 Permease MlaE AMED_7621 PF00005 ABC transporter AMED_7621 PF13732 Domain of unknown function (DUF4162) AMED_7622 PF01061 ABC-2 type transporter AMED_7633 PF00440 Bacterial regulatory proteins, tetR family AMED_7634 PF01872 RibD C-terminal domain AMED_7634 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMED_7639 PF01636 Phosphotransferase enzyme family AMED_7640 PF00440 Bacterial regulatory proteins, tetR family AMED_7644 PF13193 AMP-binding enzyme C-terminal domain AMED_7644 PF00501 AMP-binding enzyme AMED_7645 PF01568 Molydopterin dinucleotide binding domain AMED_7645 PF00384 Molybdopterin oxidoreductase AMED_7645 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMED_7646 PF00296 Luciferase-like monooxygenase AMED_7648 PF01638 HxlR-like helix-turn-helix AMED_7650 PF01965 DJ-1/PfpI family AMED_7650 PF12833 Helix-turn-helix domain AMED_7652 PF00583 Acetyltransferase (GNAT) family AMED_7655 PF07690 Major Facilitator Superfamily AMED_7656 PF00561 alpha/beta hydrolase fold AMED_7664 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_7664 PF03466 LysR substrate binding domain AMED_7669 PF02096 60Kd inner membrane protein AMED_7671 PF00149 Calcineurin-like phosphoesterase AMED_7673 PF01661 Macro domain AMED_7674 PF13419 Haloacid dehalogenase-like hydrolase AMED_7679 PF03259 Roadblock/LC7 domain AMED_7682 PF00501 AMP-binding enzyme AMED_7685 PF00990 Diguanylate cyclase, GGDEF domain AMED_7685 PF08448 PAS fold AMED_7688 PF03816 Cell envelope-related transcriptional attenuator domain AMED_7688 PF13399 LytR cell envelope-related transcriptional attenuator AMED_7690 PF00743 Flavin-binding monooxygenase-like AMED_7695 PF12833 Helix-turn-helix domain AMED_7695 PF01965 DJ-1/PfpI family AMED_7696 PF00248 Aldo/keto reductase family AMED_7697 PF12833 Helix-turn-helix domain AMED_7697 PF06719 AraC-type transcriptional regulator N-terminus AMED_7701 PF00578 AhpC/TSA family AMED_7703 PF01725 Ham1 family AMED_7704 PF01138 3' exoribonuclease family, domain 1 AMED_7704 PF03725 3' exoribonuclease family, domain 2 AMED_7705 PF12706 Beta-lactamase superfamily domain AMED_7706 PF01177 Asp/Glu/Hydantoin racemase AMED_7707 PF01694 Rhomboid family AMED_7709 PF01177 Asp/Glu/Hydantoin racemase AMED_7711 PF00291 Pyridoxal-phosphate dependent enzyme AMED_7712 PF02597 ThiS family AMED_7713 PF14464 Prokaryotic homologs of the JAB domain AMED_7715 PF03576 Peptidase family S58 AMED_7716 PF09438 Domain of unknown function (DUF2017) AMED_7717 PF02617 ATP-dependent Clp protease adaptor protein ClpS AMED_7718 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AMED_7718 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AMED_7719 PF00857 Isochorismatase family AMED_7720 PF01081 KDPG and KHG aldolase AMED_7722 PF02632 BioY family AMED_7723 PF13307 Helicase C-terminal domain AMED_7729 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMED_7731 PF00561 alpha/beta hydrolase fold AMED_7732 PF13302 Acetyltransferase (GNAT) domain AMED_7734 PF01527 Transposase AMED_7735 PF13333 Integrase core domain AMED_7735 PF00665 Integrase core domain AMED_7735 PF13276 HTH-like domain AMED_7738 PF01053 Cys/Met metabolism PLP-dependent enzyme AMED_7739 PF01037 Lrp/AsnC ligand binding domain AMED_7741 PF01037 Lrp/AsnC ligand binding domain AMED_7742 PF00296 Luciferase-like monooxygenase AMED_7744 PF18389 TrmO C-terminal domain AMED_7744 PF01980 tRNA-methyltransferase O AMED_7745 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMED_7745 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMED_7746 PF00381 PTS HPr component phosphorylation site AMED_7746 PF00391 PEP-utilising enzyme, mobile domain AMED_7746 PF05524 PEP-utilising enzyme, N-terminal AMED_7746 PF03610 PTS system fructose IIA component AMED_7747 PF02734 DAK2 domain AMED_7748 PF02733 Dak1 domain AMED_7751 PF00474 Sodium:solute symporter family AMED_7754 PF01939 Endonuclease NucS AMED_7755 PF00293 NUDIX domain AMED_7758 PF00378 Enoyl-CoA hydratase/isomerase AMED_7759 PF01965 DJ-1/PfpI family AMED_7759 PF12833 Helix-turn-helix domain AMED_7760 PF00857 Isochorismatase family AMED_7764 PF01810 LysE type translocator AMED_7765 PF01810 LysE type translocator AMED_7767 PF01370 NAD dependent epimerase/dehydratase family AMED_7768 PF12680 SnoaL-like domain AMED_7769 PF00440 Bacterial regulatory proteins, tetR family AMED_7769 PF16859 Tetracyclin repressor-like, C-terminal domain AMED_7770 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMED_7771 PF01923 Cobalamin adenosyltransferase AMED_7772 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMED_7773 PF10739 Protein of unknown function (DUF2550) AMED_7774 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AMED_7775 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMED_7775 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMED_7776 PF00231 ATP synthase AMED_7777 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMED_7777 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMED_7777 PF00306 ATP synthase alpha/beta chain, C terminal domain AMED_7778 PF00213 ATP synthase delta (OSCP) subunit AMED_7779 PF00430 ATP synthase B/B' CF(0) AMED_7780 PF00137 ATP synthase subunit C AMED_7781 PF00119 ATP synthase A chain AMED_7783 PF00953 Glycosyl transferase family 4 AMED_7784 PF01300 Telomere recombination AMED_7786 PF05175 Methyltransferase small domain AMED_7786 PF17827 PrmC N-terminal domain AMED_7787 PF00535 Glycosyl transferase family 2 AMED_7790 PF00472 RF-1 domain AMED_7790 PF03462 PCRF domain AMED_7791 PF01197 Ribosomal protein L31 AMED_7792 PF07497 Rho termination factor, RNA-binding domain AMED_7792 PF07498 Rho termination factor, N-terminal domain AMED_7792 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMED_7793 PF00288 GHMP kinases N terminal domain AMED_7794 PF00291 Pyridoxal-phosphate dependent enzyme AMED_7795 PF03447 Homoserine dehydrogenase, NAD binding domain AMED_7795 PF00742 Homoserine dehydrogenase AMED_7795 PF01842 ACT domain AMED_7796 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMED_7796 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMED_7797 PF00750 tRNA synthetases class I (R) AMED_7797 PF03485 Arginyl tRNA synthetase N terminal domain AMED_7797 PF05746 DALR anticodon binding domain AMED_7801 PF01545 Cation efflux family AMED_7803 PF00106 short chain dehydrogenase AMED_7804 PF06441 Epoxide hydrolase N terminus AMED_7806 PF08240 Alcohol dehydrogenase GroES-like domain AMED_7806 PF00107 Zinc-binding dehydrogenase AMED_7807 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AMED_7816 PF01975 Survival protein SurE AMED_7818 PF00486 Transcriptional regulatory protein, C terminal AMED_7818 PF00931 NB-ARC domain AMED_7818 PF03704 Bacterial transcriptional activator domain AMED_7819 PF00258 Flavodoxin AMED_7819 PF00175 Oxidoreductase NAD-binding domain AMED_7819 PF00067 Cytochrome P450 AMED_7819 PF00667 FAD binding domain AMED_7821 PF00295 Glycosyl hydrolases family 28 AMED_7822 PF00041 Fibronectin type III domain AMED_7822 PF00704 Glycosyl hydrolases family 18 AMED_7823 PF16499 Alpha galactosidase A AMED_7823 PF17801 Alpha galactosidase C-terminal beta sandwich domain AMED_7824 PF03664 Glycosyl hydrolase family 62 AMED_7824 PF00652 Ricin-type beta-trefoil lectin domain AMED_7825 PF00150 Cellulase (glycosyl hydrolase family 5) AMED_7825 PF00942 Cellulose binding domain AMED_7825 PF12891 Glycoside hydrolase family 44 AMED_7826 PF00480 ROK family AMED_7828 PF03664 Glycosyl hydrolase family 62 AMED_7828 PF00652 Ricin-type beta-trefoil lectin domain AMED_7829 PF00652 Ricin-type beta-trefoil lectin domain AMED_7829 PF00331 Glycosyl hydrolase family 10 AMED_7833 PF12891 Glycoside hydrolase family 44 AMED_7833 PF00150 Cellulase (glycosyl hydrolase family 5) AMED_7833 PF00942 Cellulose binding domain AMED_7837 PF13229 Right handed beta helix region AMED_7840 PF01494 FAD binding domain AMED_7842 PF01609 Transposase DDE domain AMED_7842 PF13808 DDE_Tnp_1-associated AMED_7852 PF00202 Aminotransferase class-III AMED_7853 PF02515 CoA-transferase family III AMED_7858 PF02538 Hydantoinase B/oxoprolinase AMED_7859 PF01968 Hydantoinase/oxoprolinase AMED_7859 PF05378 Hydantoinase/oxoprolinase N-terminal region AMED_7860 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMED_7860 PF00205 Thiamine pyrophosphate enzyme, central domain AMED_7860 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMED_7862 PF06974 Protein of unknown function (DUF1298) AMED_7862 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain AMED_7864 PF03070 TENA/THI-4/PQQC family AMED_7865 PF05402 Coenzyme PQQ synthesis protein D (PqqD) AMED_7866 PF13186 Iron-sulfur cluster-binding domain AMED_7866 PF04055 Radical SAM superfamily AMED_7867 PF12706 Beta-lactamase superfamily domain AMED_7870 PF01425 Amidase AMED_7871 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMED_7876 PF00180 Isocitrate/isopropylmalate dehydrogenase AMED_7877 PF00171 Aldehyde dehydrogenase family AMED_7880 PF00248 Aldo/keto reductase family AMED_7883 PF01565 FAD binding domain AMED_7883 PF02913 FAD linked oxidases, C-terminal domain AMED_7884 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMED_7884 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMED_7887 PF07690 Major Facilitator Superfamily AMED_7889 PF07730 Histidine kinase AMED_7890 PF00196 Bacterial regulatory proteins, luxR family AMED_7890 PF00072 Response regulator receiver domain AMED_7891 PF03176 MMPL family AMED_7892 PF17678 Glycosyl hydrolase family 92 N-terminal domain AMED_7892 PF07971 Glycosyl hydrolase family 92 AMED_7893 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMED_7893 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMED_7893 PF00378 Enoyl-CoA hydratase/isomerase AMED_7894 PF00108 Thiolase, N-terminal domain AMED_7894 PF02803 Thiolase, C-terminal domain AMED_7895 PF00440 Bacterial regulatory proteins, tetR family AMED_7902 PF06772 Bacterial low temperature requirement A protein (LtrA) AMED_7903 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_7903 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_7903 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_7904 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_7904 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_7904 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_7912 PF00293 NUDIX domain AMED_7912 PF13344 Haloacid dehalogenase-like hydrolase AMED_7914 PF00106 short chain dehydrogenase AMED_7916 PF00557 Metallopeptidase family M24 AMED_7920 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_7920 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_7920 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_7921 PF00364 Biotin-requiring enzyme AMED_7921 PF02785 Biotin carboxylase C-terminal domain AMED_7921 PF00289 Biotin carboxylase, N-terminal domain AMED_7921 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMED_7922 PF01039 Carboxyl transferase domain AMED_7923 PF13472 GDSL-like Lipase/Acylhydrolase family AMED_7925 PF00440 Bacterial regulatory proteins, tetR family AMED_7928 PF00561 alpha/beta hydrolase fold AMED_7929 PF01053 Cys/Met metabolism PLP-dependent enzyme AMED_7930 PF01494 FAD binding domain AMED_7931 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_7935 PF13847 Methyltransferase domain AMED_7936 PF06018 CodY GAF-like domain AMED_7936 PF13556 PucR C-terminal helix-turn-helix domain AMED_7936 PF17853 GGDEF-like domain AMED_7938 PF08240 Alcohol dehydrogenase GroES-like domain AMED_7938 PF00107 Zinc-binding dehydrogenase AMED_7939 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AMED_7939 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AMED_7941 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_7941 PF16527 Two-component sensor protein CpxA, periplasmic domain AMED_7941 PF00512 His Kinase A (phospho-acceptor) domain AMED_7941 PF00672 HAMP domain AMED_7943 PF00486 Transcriptional regulatory protein, C terminal AMED_7943 PF00072 Response regulator receiver domain AMED_7944 PF00005 ABC transporter AMED_7946 PF00664 ABC transporter transmembrane region AMED_7946 PF00005 ABC transporter AMED_7949 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMED_7949 PF16078 2-oxoglutarate dehydrogenase N-terminus AMED_7949 PF00676 Dehydrogenase E1 component AMED_7949 PF02779 Transketolase, pyrimidine binding domain AMED_7949 PF16870 2-oxoglutarate dehydrogenase C-terminal AMED_7950 PF00561 alpha/beta hydrolase fold AMED_7951 PF02709 N-terminal domain of galactosyltransferase AMED_7951 PF00535 Glycosyl transferase family 2 AMED_7952 PF07690 Major Facilitator Superfamily AMED_7954 PF00296 Luciferase-like monooxygenase AMED_7957 PF00528 Binding-protein-dependent transport system inner membrane component AMED_7958 PF00528 Binding-protein-dependent transport system inner membrane component AMED_7959 PF00571 CBS domain AMED_7959 PF00005 ABC transporter AMED_7961 PF00390 Malic enzyme, N-terminal domain AMED_7961 PF03949 Malic enzyme, NAD binding domain AMED_7962 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AMED_7964 PF01047 MarR family AMED_7967 PF00300 Histidine phosphatase superfamily (branch 1) AMED_7970 PF00781 Diacylglycerol kinase catalytic domain AMED_7971 PF02467 Transcription factor WhiB AMED_7972 PF12282 Signal transduction histidine kinase AMED_7972 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_7972 PF07568 Histidine kinase AMED_7974 PF13490 Putative zinc-finger AMED_7975 PF04542 Sigma-70 region 2 AMED_7975 PF08281 Sigma-70, region 4 AMED_7976 PF04073 Aminoacyl-tRNA editing domain AMED_7978 PF02586 SOS response associated peptidase (SRAP) AMED_7979 PF03193 RsgA GTPase AMED_7983 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain AMED_7984 PF00588 SpoU rRNA Methylase family AMED_7984 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMED_7985 PF13419 Haloacid dehalogenase-like hydrolase AMED_7987 PF00067 Cytochrome P450 AMED_7988 PF01043 SecA preprotein cross-linking domain AMED_7988 PF07517 SecA DEAD-like domain AMED_7988 PF07516 SecA Wing and Scaffold domain AMED_7989 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AMED_7989 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus AMED_7991 PF10646 Sporulation and spore germination AMED_7991 PF10647 Lipoprotein LpqB beta-propeller domain AMED_7992 PF00512 His Kinase A (phospho-acceptor) domain AMED_7992 PF00672 HAMP domain AMED_7992 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_7993 PF00486 Transcriptional regulatory protein, C terminal AMED_7993 PF00072 Response regulator receiver domain AMED_7994 PF00355 Rieske [2Fe-2S] domain AMED_7995 PF09339 IclR helix-turn-helix domain AMED_7995 PF01614 Bacterial transcriptional regulator AMED_7998 PF01571 Aminomethyltransferase folate-binding domain AMED_7998 PF16350 FAD dependent oxidoreductase central domain AMED_7998 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMED_7998 PF01266 FAD dependent oxidoreductase AMED_7999 PF02223 Thymidylate kinase AMED_8006 PF05221 S-adenosyl-L-homocysteine hydrolase AMED_8006 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AMED_8009 PF13520 Amino acid permease AMED_8011 PF00486 Transcriptional regulatory protein, C terminal AMED_8011 PF00931 NB-ARC domain AMED_8011 PF03704 Bacterial transcriptional activator domain AMED_8012 PF01238 Phosphomannose isomerase type I AMED_8014 PF03966 Trm112p-like protein AMED_8015 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMED_8015 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMED_8015 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMED_8015 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMED_8019 PF02467 Transcription factor WhiB AMED_8023 PF02585 GlcNAc-PI de-N-acetylase AMED_8024 PF00005 ABC transporter AMED_8024 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMED_8025 PF00528 Binding-protein-dependent transport system inner membrane component AMED_8026 PF12911 N-terminal TM domain of oligopeptide transport permease C AMED_8026 PF00528 Binding-protein-dependent transport system inner membrane component AMED_8027 PF00528 Binding-protein-dependent transport system inner membrane component AMED_8029 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMED_8033 PF00579 tRNA synthetases class I (W and Y) AMED_8035 PF00512 His Kinase A (phospho-acceptor) domain AMED_8035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_8035 PF00672 HAMP domain AMED_8036 PF00072 Response regulator receiver domain AMED_8036 PF00486 Transcriptional regulatory protein, C terminal AMED_8038 PF00005 ABC transporter AMED_8040 PF08402 TOBE domain AMED_8040 PF00005 ABC transporter AMED_8041 PF00528 Binding-protein-dependent transport system inner membrane component AMED_8043 PF01329 Pterin 4 alpha carbinolamine dehydratase AMED_8047 PF01926 50S ribosome-binding GTPase AMED_8047 PF06071 Protein of unknown function (DUF933) AMED_8048 PF12833 Helix-turn-helix domain AMED_8048 PF00730 HhH-GPD superfamily base excision DNA repair protein AMED_8048 PF02805 Metal binding domain of Ada AMED_8048 PF06029 AlkA N-terminal domain AMED_8050 PF13476 AAA domain AMED_8051 PF12320 Type 5 capsule protein repressor C-terminal domain AMED_8051 PF00149 Calcineurin-like phosphoesterase AMED_8054 PF02401 LytB protein AMED_8056 PF13742 OB-fold nucleic acid binding domain AMED_8056 PF02601 Exonuclease VII, large subunit AMED_8058 PF02609 Exonuclease VII small subunit AMED_8059 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AMED_8061 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_8062 PF00206 Lyase AMED_8062 PF10415 Fumarase C C-terminus AMED_8064 PF04679 ATP dependent DNA ligase C terminal region AMED_8064 PF01068 ATP dependent DNA ligase domain AMED_8064 PF04675 DNA ligase N terminus AMED_8067 PF00753 Metallo-beta-lactamase superfamily AMED_8071 PF00571 CBS domain AMED_8071 PF00478 IMP dehydrogenase / GMP reductase domain AMED_8074 PF13638 PIN domain AMED_8074 PF02562 PhoH-like protein AMED_8075 PF01255 Putative undecaprenyl diphosphate synthase AMED_8076 PF03006 Haemolysin-III related AMED_8079 PF11181 Heat induced stress protein YflT AMED_8079 PF09557 Domain of unknown function (DUF2382) AMED_8081 PF08548 Peptidase M10 serralysin C terminal AMED_8081 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) AMED_8081 PF12708 Pectate lyase superfamily protein AMED_8085 PF03190 Protein of unknown function, DUF255 AMED_8087 PF17827 PrmC N-terminal domain AMED_8087 PF05175 Methyltransferase small domain AMED_8088 PF00149 Calcineurin-like phosphoesterase AMED_8090 PF02585 GlcNAc-PI de-N-acetylase AMED_8092 PF01272 Transcription elongation factor, GreA/GreB, C-term AMED_8092 PF03449 Transcription elongation factor, N-terminal AMED_8094 PF13404 AsnC-type helix-turn-helix domain AMED_8094 PF01037 Lrp/AsnC ligand binding domain AMED_8095 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_8101 PF13291 ACT domain AMED_8101 PF00291 Pyridoxal-phosphate dependent enzyme AMED_8104 PF01053 Cys/Met metabolism PLP-dependent enzyme AMED_8107 PF00571 CBS domain AMED_8107 PF00291 Pyridoxal-phosphate dependent enzyme AMED_8108 PF02803 Thiolase, C-terminal domain AMED_8108 PF00108 Thiolase, N-terminal domain AMED_8113 PF00106 short chain dehydrogenase AMED_8118 PF00498 FHA domain AMED_8118 PF00486 Transcriptional regulatory protein, C terminal AMED_8118 PF03704 Bacterial transcriptional activator domain AMED_8119 PF03704 Bacterial transcriptional activator domain AMED_8119 PF00931 NB-ARC domain AMED_8119 PF00486 Transcriptional regulatory protein, C terminal AMED_8120 PF00232 Glycosyl hydrolase family 1 AMED_8121 PF00528 Binding-protein-dependent transport system inner membrane component AMED_8122 PF00528 Binding-protein-dependent transport system inner membrane component AMED_8124 PF00196 Bacterial regulatory proteins, luxR family AMED_8124 PF00072 Response regulator receiver domain AMED_8125 PF00933 Glycosyl hydrolase family 3 N terminal domain AMED_8126 PF00248 Aldo/keto reductase family AMED_8128 PF07690 Major Facilitator Superfamily AMED_8134 PF00975 Thioesterase domain AMED_8135 PF02983 Alpha-lytic protease prodomain AMED_8136 PF12833 Helix-turn-helix domain AMED_8139 PF01341 Glycosyl hydrolases family 6 AMED_8139 PF00041 Fibronectin type III domain AMED_8139 PF00553 Cellulose binding domain AMED_8140 PF00009 Elongation factor Tu GTP binding domain AMED_8140 PF00679 Elongation factor G C-terminus AMED_8140 PF03764 Elongation factor G, domain IV AMED_8142 PF00512 His Kinase A (phospho-acceptor) domain AMED_8142 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_8142 PF00672 HAMP domain AMED_8143 PF03952 Enolase, N-terminal domain AMED_8143 PF00113 Enolase, C-terminal TIM barrel domain AMED_8144 PF10502 Signal peptidase, peptidase S26 AMED_8145 PF00005 ABC transporter AMED_8145 PF00664 ABC transporter transmembrane region AMED_8151 PF00196 Bacterial regulatory proteins, luxR family AMED_8152 PF01494 FAD binding domain AMED_8154 PF00196 Bacterial regulatory proteins, luxR family AMED_8165 PF08281 Sigma-70, region 4 AMED_8165 PF04542 Sigma-70 region 2 AMED_8166 PF00069 Protein kinase domain AMED_8166 PF03793 PASTA domain AMED_8172 PF00440 Bacterial regulatory proteins, tetR family AMED_8173 PF04542 Sigma-70 region 2 AMED_8173 PF04539 Sigma-70 region 3 AMED_8173 PF04545 Sigma-70, region 4 AMED_8187 PF03167 Uracil DNA glycosylase superfamily AMED_8188 PF04493 Endonuclease V AMED_8190 PF00082 Subtilase family AMED_8191 PF00005 ABC transporter AMED_8191 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMED_8192 PF00005 ABC transporter AMED_8192 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMED_8195 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMED_8196 PF02541 Ppx/GppA phosphatase family AMED_8200 PF00113 Enolase, C-terminal TIM barrel domain AMED_8200 PF03952 Enolase, N-terminal domain AMED_8204 PF03239 Iron permease FTR1 family AMED_8205 PF13473 Cupredoxin-like domain AMED_8205 PF09375 Imelysin AMED_8206 PF10518 TAT (twin-arginine translocation) pathway signal sequence AMED_8206 PF04261 Dyp-type peroxidase family AMED_8209 PF01243 Pyridoxamine 5'-phosphate oxidase AMED_8212 PF00005 ABC transporter AMED_8214 PF04542 Sigma-70 region 2 AMED_8214 PF08281 Sigma-70, region 4 AMED_8215 PF03819 MazG nucleotide pyrophosphohydrolase domain AMED_8219 PF17757 UvrB interaction domain AMED_8219 PF02559 CarD-like/TRCF domain AMED_8219 PF00270 DEAD/DEAH box helicase AMED_8219 PF03461 TRCF domain AMED_8219 PF00271 Helicase conserved C-terminal domain AMED_8222 PF09335 SNARE associated Golgi protein AMED_8223 PF00398 Ribosomal RNA adenine dimethylase AMED_8224 PF07730 Histidine kinase AMED_8225 PF00072 Response regulator receiver domain AMED_8225 PF00196 Bacterial regulatory proteins, luxR family AMED_8226 PF07995 Glucose / Sorbosone dehydrogenase AMED_8230 PF00293 NUDIX domain AMED_8231 PF00440 Bacterial regulatory proteins, tetR family AMED_8231 PF18665 Tetracyclin repressor-like, C-terminal domain AMED_8233 PF00990 Diguanylate cyclase, GGDEF domain AMED_8233 PF13185 GAF domain AMED_8233 PF00563 EAL domain AMED_8234 PF00132 Bacterial transferase hexapeptide (six repeats) AMED_8234 PF12804 MobA-like NTP transferase domain AMED_8235 PF14572 Phosphoribosyl synthetase-associated domain AMED_8235 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AMED_8239 PF14693 Ribosomal protein TL5, C-terminal domain AMED_8239 PF01386 Ribosomal L25p family AMED_8240 PF01195 Peptidyl-tRNA hydrolase AMED_8241 PF05103 DivIVA protein AMED_8243 PF00501 AMP-binding enzyme AMED_8243 PF14535 AMP-binding enzyme C-terminal domain AMED_8244 PF12848 ABC transporter AMED_8244 PF00005 ABC transporter AMED_8244 PF16326 ABC transporter C-terminal domain AMED_8246 PF08544 GHMP kinases C terminal AMED_8246 PF00288 GHMP kinases N terminal domain AMED_8247 PF09383 NIL domain AMED_8247 PF00005 ABC transporter AMED_8248 PF00398 Ribosomal RNA adenine dimethylase AMED_8249 PF06737 Transglycosylase-like domain AMED_8249 PF03990 G5-linked-Ubiquitin-like domain AMED_8249 PF07501 G5 domain AMED_8250 PF01026 TatD related DNase AMED_8251 PF09334 tRNA synthetases class I (M) AMED_8251 PF08264 Anticodon-binding domain of tRNA AMED_8253 PF13732 Domain of unknown function (DUF4162) AMED_8253 PF00005 ABC transporter AMED_8256 PF04715 Anthranilate synthase component I, N terminal region AMED_8256 PF00425 chorismate binding enzyme AMED_8257 PF08240 Alcohol dehydrogenase GroES-like domain AMED_8257 PF00107 Zinc-binding dehydrogenase AMED_8259 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMED_8260 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase AMED_8260 PF16192 C-terminal four TMM region of protein-O-mannosyltransferase AMED_8262 PF00398 Ribosomal RNA adenine dimethylase AMED_8263 PF00069 Protein kinase domain AMED_8263 PF03793 PASTA domain AMED_8264 PF00501 AMP-binding enzyme AMED_8264 PF16177 Acetyl-coenzyme A synthetase N-terminus AMED_8264 PF13193 AMP-binding enzyme C-terminal domain AMED_8265 PF00728 Glycosyl hydrolase family 20, catalytic domain AMED_8265 PF02838 Glycosyl hydrolase family 20, domain 2 AMED_8267 PF03475 3-alpha domain AMED_8267 PF03473 MOSC domain AMED_8269 PF03358 NADPH-dependent FMN reductase AMED_8270 PF04542 Sigma-70 region 2 AMED_8270 PF08281 Sigma-70, region 4 AMED_8270 PF12680 SnoaL-like domain AMED_8277 PF03176 MMPL family AMED_8278 PF00563 EAL domain AMED_8278 PF00990 Diguanylate cyclase, GGDEF domain AMED_8278 PF08447 PAS fold AMED_8278 PF08448 PAS fold AMED_8280 PF00067 Cytochrome P450 AMED_8281 PF13614 AAA domain AMED_8284 PF05368 NmrA-like family AMED_8286 PF00486 Transcriptional regulatory protein, C terminal AMED_8286 PF00072 Response regulator receiver domain AMED_8287 PF00672 HAMP domain AMED_8287 PF00512 His Kinase A (phospho-acceptor) domain AMED_8287 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_8288 PF01427 D-ala-D-ala dipeptidase AMED_8289 PF01820 D-ala D-ala ligase N-terminus AMED_8289 PF07478 D-ala D-ala ligase C-terminus AMED_8290 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMED_8290 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMED_8291 PF00291 Pyridoxal-phosphate dependent enzyme AMED_8292 PF01638 HxlR-like helix-turn-helix AMED_8293 PF00155 Aminotransferase class I and II AMED_8294 PF00501 AMP-binding enzyme AMED_8294 PF08242 Methyltransferase domain AMED_8294 PF00550 Phosphopantetheine attachment site AMED_8294 PF00668 Condensation domain AMED_8296 PF00975 Thioesterase domain AMED_8297 PF01810 LysE type translocator AMED_8299 PF00069 Protein kinase domain AMED_8299 PF03793 PASTA domain AMED_8309 PF13302 Acetyltransferase (GNAT) domain AMED_8310 PF00994 Probable molybdopterin binding domain AMED_8310 PF03454 MoeA C-terminal region (domain IV) AMED_8310 PF03453 MoeA N-terminal region (domain I and II) AMED_8311 PF00483 Nucleotidyl transferase AMED_8312 PF01812 5-formyltetrahydrofolate cyclo-ligase family AMED_8315 PF01741 Large-conductance mechanosensitive channel, MscL AMED_8317 PF00994 Probable molybdopterin binding domain AMED_8317 PF01967 MoaC family AMED_8318 PF01370 NAD dependent epimerase/dehydratase family AMED_8321 PF16736 Single Cache-like AMED_8321 PF00989 PAS fold AMED_8321 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_8321 PF00512 His Kinase A (phospho-acceptor) domain AMED_8322 PF00072 Response regulator receiver domain AMED_8322 PF00486 Transcriptional regulatory protein, C terminal AMED_8324 PF00535 Glycosyl transferase family 2 AMED_8326 PF08241 Methyltransferase domain AMED_8329 PF13180 PDZ domain AMED_8330 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AMED_8330 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AMED_8331 PF00455 DeoR C terminal sensor domain AMED_8331 PF08220 DeoR-like helix-turn-helix domain AMED_8332 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_8332 PF00672 HAMP domain AMED_8332 PF00512 His Kinase A (phospho-acceptor) domain AMED_8333 PF00486 Transcriptional regulatory protein, C terminal AMED_8333 PF00072 Response regulator receiver domain AMED_8334 PF03458 UPF0126 domain AMED_8335 PF00072 Response regulator receiver domain AMED_8335 PF00196 Bacterial regulatory proteins, luxR family AMED_8338 PF07690 Major Facilitator Superfamily AMED_8339 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_8339 PF03466 LysR substrate binding domain AMED_8340 PF00248 Aldo/keto reductase family AMED_8341 PF00392 Bacterial regulatory proteins, gntR family AMED_8341 PF00155 Aminotransferase class I and II AMED_8344 PF03793 PASTA domain AMED_8344 PF00069 Protein kinase domain AMED_8345 PF00459 Inositol monophosphatase family AMED_8346 PF02633 Creatinine amidohydrolase AMED_8347 PF00925 GTP cyclohydrolase II AMED_8350 PF00534 Glycosyl transferases group 1 AMED_8350 PF13439 Glycosyltransferase Family 4 AMED_8354 PF13298 DNA polymerase Ligase (LigD) AMED_8354 PF01068 ATP dependent DNA ligase domain AMED_8354 PF04679 ATP dependent DNA ligase C terminal region AMED_8355 PF09995 Uncharacterized protein conserved in bacteria (DUF2236) AMED_8356 PF03466 LysR substrate binding domain AMED_8356 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_8357 PF08031 Berberine and berberine like AMED_8357 PF01565 FAD binding domain AMED_8358 PF01757 Acyltransferase family AMED_8359 PF04075 F420H(2)-dependent quinone reductase AMED_8366 PF01494 FAD binding domain AMED_8367 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_8367 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_8367 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_8369 PF00232 Glycosyl hydrolase family 1 AMED_8370 PF00005 ABC transporter AMED_8370 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMED_8371 PF00528 Binding-protein-dependent transport system inner membrane component AMED_8371 PF12911 N-terminal TM domain of oligopeptide transport permease C AMED_8372 PF00528 Binding-protein-dependent transport system inner membrane component AMED_8373 PF00005 ABC transporter AMED_8373 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMED_8374 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMED_8376 PF01047 MarR family AMED_8376 PF00480 ROK family AMED_8377 PF00722 Glycosyl hydrolases family 16 AMED_8378 PF16483 Beta-1,3-glucanase AMED_8378 PF00652 Ricin-type beta-trefoil lectin domain AMED_8379 PF00652 Ricin-type beta-trefoil lectin domain AMED_8379 PF16483 Beta-1,3-glucanase AMED_8383 PF07286 Protein of unknown function (DUF1445) AMED_8384 PF03746 LamB/YcsF family AMED_8385 PF02682 Carboxyltransferase domain, subdomain C and D AMED_8386 PF02626 Carboxyltransferase domain, subdomain A and B AMED_8390 PF13532 2OG-Fe(II) oxygenase superfamily AMED_8391 PF00107 Zinc-binding dehydrogenase AMED_8391 PF08240 Alcohol dehydrogenase GroES-like domain AMED_8394 PF02742 Iron dependent repressor, metal binding and dimerisation domain AMED_8394 PF01325 Iron dependent repressor, N-terminal DNA binding domain AMED_8397 PF07969 Amidohydrolase family AMED_8398 PF00378 Enoyl-CoA hydratase/isomerase AMED_8399 PF00501 AMP-binding enzyme AMED_8399 PF13193 AMP-binding enzyme C-terminal domain AMED_8404 PF00425 chorismate binding enzyme AMED_8406 PF13193 AMP-binding enzyme C-terminal domain AMED_8406 PF00501 AMP-binding enzyme AMED_8407 PF13416 Bacterial extracellular solute-binding protein AMED_8408 PF00528 Binding-protein-dependent transport system inner membrane component AMED_8409 PF00528 Binding-protein-dependent transport system inner membrane component AMED_8414 PF04542 Sigma-70 region 2 AMED_8414 PF08281 Sigma-70, region 4 AMED_8414 PF12680 SnoaL-like domain AMED_8415 PF08240 Alcohol dehydrogenase GroES-like domain AMED_8415 PF00107 Zinc-binding dehydrogenase AMED_8417 PF01565 FAD binding domain AMED_8417 PF02913 FAD linked oxidases, C-terminal domain AMED_8418 PF00440 Bacterial regulatory proteins, tetR family AMED_8419 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AMED_8419 PF01266 FAD dependent oxidoreductase AMED_8422 PF13732 Domain of unknown function (DUF4162) AMED_8422 PF00005 ABC transporter AMED_8425 PF00875 DNA photolyase AMED_8425 PF03441 FAD binding domain of DNA photolyase AMED_8426 PF00285 Citrate synthase, C-terminal domain AMED_8427 PF00294 pfkB family carbohydrate kinase AMED_8429 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_8429 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_8429 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_8432 PF13382 Adenine deaminase C-terminal domain AMED_8432 PF01979 Amidohydrolase family AMED_8434 PF01263 Aldose 1-epimerase AMED_8435 PF00082 Subtilase family AMED_8435 PF09286 Pro-kumamolisin, activation domain AMED_8436 PF00440 Bacterial regulatory proteins, tetR family AMED_8437 PF00753 Metallo-beta-lactamase superfamily AMED_8438 PF00753 Metallo-beta-lactamase superfamily AMED_8440 PF05977 Transmembrane secretion effector AMED_8441 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AMED_8441 PF01243 Pyridoxamine 5'-phosphate oxidase AMED_8444 PF03583 Secretory lipase AMED_8445 PF01774 UreD urease accessory protein AMED_8446 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMED_8447 PF01730 UreF AMED_8448 PF01979 Amidohydrolase family AMED_8448 PF00449 Urease alpha-subunit, N-terminal domain AMED_8449 PF00699 Urease beta subunit AMED_8450 PF00547 Urease, gamma subunit AMED_8451 PF00285 Citrate synthase, C-terminal domain AMED_8453 PF00106 short chain dehydrogenase AMED_8453 PF00561 alpha/beta hydrolase fold AMED_8454 PF00005 ABC transporter AMED_8454 PF13732 Domain of unknown function (DUF4162) AMED_8456 PF07730 Histidine kinase AMED_8456 PF05231 MASE1 AMED_8456 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_8457 PF00196 Bacterial regulatory proteins, luxR family AMED_8457 PF00072 Response regulator receiver domain AMED_8458 PF00144 Beta-lactamase AMED_8460 PF00266 Aminotransferase class-V AMED_8461 PF09594 Glycosyltransferase family 87 AMED_8462 PF01979 Amidohydrolase family AMED_8463 PF02687 FtsX-like permease family AMED_8463 PF00005 ABC transporter AMED_8463 PF12704 MacB-like periplasmic core domain AMED_8464 PF12704 MacB-like periplasmic core domain AMED_8464 PF02687 FtsX-like permease family AMED_8464 PF00005 ABC transporter AMED_8467 PF00072 Response regulator receiver domain AMED_8467 PF00486 Transcriptional regulatory protein, C terminal AMED_8468 PF00672 HAMP domain AMED_8468 PF00512 His Kinase A (phospho-acceptor) domain AMED_8468 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_8469 PF11268 Protein of unknown function (DUF3071) AMED_8473 PF00588 SpoU rRNA Methylase family AMED_8476 PF01126 Heme oxygenase AMED_8477 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AMED_8477 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AMED_8478 PF00797 N-acetyltransferase AMED_8479 PF05977 Transmembrane secretion effector AMED_8480 PF01047 MarR family AMED_8482 PF00860 Permease family AMED_8485 PF11228 Protein of unknown function (DUF3027) AMED_8487 PF07690 Major Facilitator Superfamily AMED_8489 PF00313 'Cold-shock' DNA-binding domain AMED_8491 PF13419 Haloacid dehalogenase-like hydrolase AMED_8492 PF00440 Bacterial regulatory proteins, tetR family AMED_8492 PF02909 Tetracyclin repressor-like, C-terminal domain AMED_8493 PF00268 Ribonucleotide reductase, small chain AMED_8494 PF13193 AMP-binding enzyme C-terminal domain AMED_8494 PF00501 AMP-binding enzyme AMED_8496 PF08281 Sigma-70, region 4 AMED_8496 PF04542 Sigma-70 region 2 AMED_8497 PF03442 Carbohydrate binding domain X2 AMED_8497 PF00942 Cellulose binding domain AMED_8498 PF00004 ATPase family associated with various cellular activities (AAA) AMED_8498 PF01434 Peptidase family M41 AMED_8498 PF06480 FtsH Extracellular AMED_8498 PF17862 AAA+ lid domain AMED_8506 PF02567 Phenazine biosynthesis-like protein AMED_8507 PF03733 Inner membrane component domain AMED_8508 PF00149 Calcineurin-like phosphoesterase AMED_8509 PF13344 Haloacid dehalogenase-like hydrolase AMED_8510 PF07732 Multicopper oxidase AMED_8510 PF07731 Multicopper oxidase AMED_8511 PF00005 ABC transporter AMED_8511 PF03459 TOBE domain AMED_8512 PF00528 Binding-protein-dependent transport system inner membrane component AMED_8515 PF01047 MarR family AMED_8516 PF06463 Molybdenum Cofactor Synthesis C AMED_8516 PF04055 Radical SAM superfamily AMED_8518 PF06737 Transglycosylase-like domain AMED_8521 PF02391 MoaE protein AMED_8522 PF01967 MoaC family AMED_8523 PF03949 Malic enzyme, NAD binding domain AMED_8523 PF00390 Malic enzyme, N-terminal domain AMED_8528 PF03259 Roadblock/LC7 domain AMED_8531 PF03259 Roadblock/LC7 domain AMED_8532 PF00512 His Kinase A (phospho-acceptor) domain AMED_8532 PF08521 Two-component sensor kinase N-terminal AMED_8532 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_8533 PF09084 NMT1/THI5 like AMED_8534 PF00528 Binding-protein-dependent transport system inner membrane component AMED_8535 PF00528 Binding-protein-dependent transport system inner membrane component AMED_8536 PF00005 ABC transporter AMED_8537 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMED_8537 PF00205 Thiamine pyrophosphate enzyme, central domain AMED_8537 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMED_8539 PF09286 Pro-kumamolisin, activation domain AMED_8539 PF04151 Bacterial pre-peptidase C-terminal domain AMED_8543 PF03932 CutC family AMED_8547 PF04851 Type III restriction enzyme, res subunit AMED_8547 PF00271 Helicase conserved C-terminal domain AMED_8551 PF18374 Enolase N-terminal domain-like AMED_8551 PF13378 Enolase C-terminal domain-like AMED_8554 PF00118 TCP-1/cpn60 chaperonin family AMED_8555 PF00069 Protein kinase domain AMED_8555 PF13462 Thioredoxin AMED_8556 PF00313 'Cold-shock' DNA-binding domain AMED_8559 PF03453 MoeA N-terminal region (domain I and II) AMED_8559 PF03454 MoeA C-terminal region (domain IV) AMED_8559 PF00994 Probable molybdopterin binding domain AMED_8562 PF04226 Transglycosylase associated protein AMED_8563 PF02666 Phosphatidylserine decarboxylase AMED_8564 PF01066 CDP-alcohol phosphatidyltransferase AMED_8565 PF00004 ATPase family associated with various cellular activities (AAA) AMED_8565 PF01434 Peptidase family M41 AMED_8565 PF17862 AAA+ lid domain AMED_8568 PF01327 Polypeptide deformylase AMED_8569 PF09137 Glucodextranase, domain N AMED_8569 PF00723 Glycosyl hydrolases family 15 AMED_8570 PF13180 PDZ domain AMED_8571 PF13667 ThiC-associated domain AMED_8571 PF01964 Radical SAM ThiC family AMED_8572 PF08543 Phosphomethylpyrimidine kinase AMED_8574 PF08543 Phosphomethylpyrimidine kinase AMED_8575 PF01047 MarR family AMED_8576 PF05690 Thiazole biosynthesis protein ThiG AMED_8579 PF02581 Thiamine monophosphate synthase AMED_8581 PF13291 ACT domain AMED_8581 PF00291 Pyridoxal-phosphate dependent enzyme AMED_8582 PF07690 Major Facilitator Superfamily AMED_8583 PF00392 Bacterial regulatory proteins, gntR family AMED_8583 PF07702 UTRA domain AMED_8584 PF01380 SIS domain AMED_8585 PF01869 BadF/BadG/BcrA/BcrD ATPase family AMED_8587 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AMED_8593 PF00486 Transcriptional regulatory protein, C terminal AMED_8593 PF00931 NB-ARC domain AMED_8593 PF03704 Bacterial transcriptional activator domain AMED_8594 PF05721 Phytanoyl-CoA dioxygenase (PhyH) AMED_8595 PF06339 Ectoine synthase AMED_8596 PF00202 Aminotransferase class-III AMED_8597 PF00583 Acetyltransferase (GNAT) family AMED_8598 PF01734 Patatin-like phospholipase AMED_8598 PF11856 Protein of unknown function (DUF3376) AMED_8599 PF00107 Zinc-binding dehydrogenase AMED_8599 PF08240 Alcohol dehydrogenase GroES-like domain AMED_8600 PF01638 HxlR-like helix-turn-helix AMED_8601 PF04286 Protein of unknown function (DUF445) AMED_8604 PF06305 Lipopolysaccharide assembly protein A domain AMED_8609 PF13193 AMP-binding enzyme C-terminal domain AMED_8609 PF00501 AMP-binding enzyme AMED_8614 PF00933 Glycosyl hydrolase family 3 N terminal domain AMED_8614 PF14310 Fibronectin type III-like domain AMED_8614 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMED_8614 PF07691 PA14 domain AMED_8616 PF01638 HxlR-like helix-turn-helix AMED_8621 PF00005 ABC transporter AMED_8623 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMED_8624 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_8626 PF13380 CoA binding domain AMED_8629 PF00741 Gas vesicle protein AMED_8630 PF00741 Gas vesicle protein AMED_8630 PF05121 Gas vesicle protein K AMED_8631 PF00741 Gas vesicle protein AMED_8633 PF00741 Gas vesicle protein AMED_8635 PF00072 Response regulator receiver domain AMED_8635 PF00486 Transcriptional regulatory protein, C terminal AMED_8636 PF00672 HAMP domain AMED_8636 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_8636 PF00512 His Kinase A (phospho-acceptor) domain AMED_8637 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMED_8637 PF07685 CobB/CobQ-like glutamine amidotransferase domain AMED_8638 PF02875 Mur ligase family, glutamate ligase domain AMED_8638 PF08245 Mur ligase middle domain AMED_8639 PF14765 Polyketide synthase dehydratase AMED_8639 PF00550 Phosphopantetheine attachment site AMED_8639 PF08659 KR domain AMED_8639 PF08990 Erythronolide synthase docking AMED_8639 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_8639 PF16197 Ketoacyl-synthetase C-terminal extension AMED_8639 PF09277 Erythronolide synthase, docking AMED_8639 PF08240 Alcohol dehydrogenase GroES-like domain AMED_8639 PF00698 Acyl transferase domain AMED_8639 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_8640 PF00440 Bacterial regulatory proteins, tetR family AMED_8640 PF18665 Tetracyclin repressor-like, C-terminal domain AMED_8642 PF02652 L-lactate permease AMED_8644 PF04542 Sigma-70 region 2 AMED_8644 PF08281 Sigma-70, region 4 AMED_8645 PF03795 YCII-related domain AMED_8646 PF03795 YCII-related domain AMED_8649 PF00672 HAMP domain AMED_8649 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_8649 PF00512 His Kinase A (phospho-acceptor) domain AMED_8657 PF04542 Sigma-70 region 2 AMED_8657 PF12680 SnoaL-like domain AMED_8657 PF08281 Sigma-70, region 4 AMED_8662 PF09286 Pro-kumamolisin, activation domain AMED_8662 PF00082 Subtilase family AMED_8665 PF13411 MerR HTH family regulatory protein AMED_8669 PF00982 Glycosyltransferase family 20 AMED_8673 PF00326 Prolyl oligopeptidase family AMED_8673 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AMED_8674 PF04542 Sigma-70 region 2 AMED_8674 PF08281 Sigma-70, region 4 AMED_8676 PF18073 Rubredoxin metal binding domain AMED_8676 PF06745 KaiC AMED_8678 PF02559 CarD-like/TRCF domain AMED_8679 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AMED_8680 PF02542 YgbB family AMED_8684 PF09190 DALR domain AMED_8684 PF01406 tRNA synthetases class I (C) catalytic domain AMED_8685 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMED_8685 PF00588 SpoU rRNA Methylase family AMED_8686 PF03062 MBOAT, membrane-bound O-acyltransferase family AMED_8692 PF00596 Class II Aldolase and Adducin N-terminal domain AMED_8695 PF04286 Protein of unknown function (DUF445) AMED_8696 PF00950 ABC 3 transport family AMED_8697 PF00005 ABC transporter AMED_8698 PF01297 Zinc-uptake complex component A periplasmic AMED_8699 PF00356 Bacterial regulatory proteins, lacI family AMED_8700 PF00484 Carbonic anhydrase AMED_8701 PF06722 Protein of unknown function (DUF1205) AMED_8702 PF00730 HhH-GPD superfamily base excision DNA repair protein AMED_8702 PF00633 Helix-hairpin-helix motif AMED_8705 PF01433 Peptidase family M1 domain AMED_8705 PF11838 ERAP1-like C-terminal domain AMED_8706 PF06480 FtsH Extracellular AMED_8706 PF01434 Peptidase family M41 AMED_8706 PF00004 ATPase family associated with various cellular activities (AAA) AMED_8706 PF17862 AAA+ lid domain AMED_8707 PF03992 Antibiotic biosynthesis monooxygenase AMED_8708 PF02146 Sir2 family AMED_8719 PF13732 Domain of unknown function (DUF4162) AMED_8719 PF00005 ABC transporter AMED_8720 PF01061 ABC-2 type transporter AMED_8721 PF00196 Bacterial regulatory proteins, luxR family AMED_8723 PF01470 Pyroglutamyl peptidase AMED_8725 PF00012 Hsp70 protein AMED_8726 PF13744 Helix-turn-helix domain AMED_8729 PF07724 AAA domain (Cdc48 subfamily) AMED_8729 PF17871 AAA lid domain AMED_8729 PF02861 Clp amino terminal domain, pathogenicity island component AMED_8729 PF10431 C-terminal, D2-small domain, of ClpB protein AMED_8729 PF00004 ATPase family associated with various cellular activities (AAA) AMED_8733 PF11774 Lsr2 AMED_8734 PF00152 tRNA synthetases class II (D, K and N) AMED_8734 PF01336 OB-fold nucleic acid binding domain AMED_8735 PF08241 Methyltransferase domain AMED_8736 PF03309 Type III pantothenate kinase AMED_8737 PF02261 Aspartate decarboxylase AMED_8738 PF02569 Pantoate-beta-alanine ligase AMED_8743 PF13411 MerR HTH family regulatory protein AMED_8744 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AMED_8745 PF02152 Dihydroneopterin aldolase AMED_8746 PF00809 Pterin binding enzyme AMED_8747 PF01227 GTP cyclohydrolase I AMED_8748 PF00004 ATPase family associated with various cellular activities (AAA) AMED_8748 PF17862 AAA+ lid domain AMED_8748 PF01434 Peptidase family M41 AMED_8754 PF01171 PP-loop family AMED_8754 PF09179 TilS substrate binding domain AMED_8757 PF00719 Inorganic pyrophosphatase AMED_8758 PF07690 Major Facilitator Superfamily AMED_8759 PF00464 Serine hydroxymethyltransferase AMED_8760 PF00298 Ribosomal protein L11, RNA binding domain AMED_8760 PF03946 Ribosomal protein L11, N-terminal domain AMED_8761 PF00132 Bacterial transferase hexapeptide (six repeats) AMED_8762 PF00246 Zinc carboxypeptidase AMED_8765 PF07110 EthD domain AMED_8777 PF00392 Bacterial regulatory proteins, gntR family AMED_8777 PF07702 UTRA domain AMED_8780 PF01580 FtsK/SpoIIIE family AMED_8780 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AMED_8780 PF17854 FtsK alpha domain AMED_8780 PF09397 Ftsk gamma domain AMED_8785 PF00589 Phage integrase family AMED_8787 PF12169 DNA polymerase III subunits gamma and tau domain III AMED_8788 PF02223 Thymidylate kinase AMED_8794 PF13368 Topoisomerase C-terminal repeat AMED_8794 PF01751 Toprim domain AMED_8794 PF01131 DNA topoisomerase AMED_8798 PF03030 Inorganic H+ pyrophosphatase AMED_8799 PF00270 DEAD/DEAH box helicase AMED_8799 PF09369 Domain of unknown function (DUF1998) AMED_8799 PF00271 Helicase conserved C-terminal domain AMED_8805 PF00437 Type II/IV secretion system protein AMED_8808 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMED_8808 PF00933 Glycosyl hydrolase family 3 N terminal domain AMED_8809 PF07075 Protein of unknown function (DUF1343) AMED_8810 PF00144 Beta-lactamase AMED_8811 PF01380 SIS domain AMED_8811 PF01418 Helix-turn-helix domain, rpiR family AMED_8812 PF01380 SIS domain AMED_8813 PF03824 High-affinity nickel-transport protein AMED_8815 PF00156 Phosphoribosyl transferase domain AMED_8817 PF13193 AMP-binding enzyme C-terminal domain AMED_8817 PF00501 AMP-binding enzyme AMED_8817 PF16177 Acetyl-coenzyme A synthetase N-terminus AMED_8821 PF00854 POT family AMED_8822 PF06965 Na+/H+ antiporter 1 AMED_8824 PF00561 alpha/beta hydrolase fold AMED_8825 PF01494 FAD binding domain AMED_8827 PF02674 Colicin V production protein AMED_8829 PF08534 Redoxin AMED_8830 PF10576 Iron-sulfur binding domain of endonuclease III AMED_8830 PF00730 HhH-GPD superfamily base excision DNA repair protein AMED_8830 PF00633 Helix-hairpin-helix motif AMED_8832 PF00027 Cyclic nucleotide-binding domain AMED_8832 PF13545 Crp-like helix-turn-helix domain AMED_8841 PF00135 Carboxylesterase family AMED_8843 PF16123 Hydroxyacylglutathione hydrolase C-terminus AMED_8843 PF00753 Metallo-beta-lactamase superfamily AMED_8850 PF02374 Anion-transporting ATPase AMED_8851 PF13614 AAA domain AMED_8852 PF02467 Transcription factor WhiB AMED_8853 PF00912 Transglycosylase AMED_8853 PF00905 Penicillin binding protein transpeptidase domain AMED_8853 PF17092 Penicillin-binding protein OB-like domain AMED_8854 PF00069 Protein kinase domain AMED_8854 PF14032 PknH-like extracellular domain AMED_8855 PF00149 Calcineurin-like phosphoesterase AMED_8856 PF13847 Methyltransferase domain AMED_8857 PF00326 Prolyl oligopeptidase family AMED_8863 PF00535 Glycosyl transferase family 2 AMED_8864 PF02222 ATP-grasp domain AMED_8866 PF16861 Carbamoyltransferase C-terminus AMED_8866 PF02543 Carbamoyltransferase N-terminus AMED_8869 PF00282 Pyridoxal-dependent decarboxylase conserved domain AMED_8870 PF00210 Ferritin-like domain AMED_8871 PF02566 OsmC-like protein AMED_8872 PF03358 NADPH-dependent FMN reductase AMED_8873 PF07859 alpha/beta hydrolase fold AMED_8876 PF07690 Major Facilitator Superfamily AMED_8879 PF01139 tRNA-splicing ligase RtcB AMED_8882 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMED_8882 PF02774 Semialdehyde dehydrogenase, dimerisation domain AMED_8883 PF01842 ACT domain AMED_8883 PF13840 ACT domain AMED_8883 PF00696 Amino acid kinase family AMED_8886 PF08502 LeuA allosteric (dimerisation) domain AMED_8886 PF00682 HMGL-like AMED_8892 PF03466 LysR substrate binding domain AMED_8892 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_8893 PF00892 EamA-like transporter family AMED_8894 PF09335 SNARE associated Golgi protein AMED_8896 PF03795 YCII-related domain AMED_8897 PF08281 Sigma-70, region 4 AMED_8897 PF04542 Sigma-70 region 2 AMED_8898 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMED_8898 PF00005 ABC transporter AMED_8899 PF00005 ABC transporter AMED_8899 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMED_8902 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMED_8904 PF00535 Glycosyl transferase family 2 AMED_8908 PF00535 Glycosyl transferase family 2 AMED_8910 PF13457 GW (Gly-Tryp) dipeptide domain AMED_8910 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AMED_8911 PF13662 Toprim domain AMED_8911 PF02132 RecR protein AMED_8912 PF02575 YbaB/EbfC DNA-binding family AMED_8914 PF01638 HxlR-like helix-turn-helix AMED_8915 PF01243 Pyridoxamine 5'-phosphate oxidase AMED_8916 PF13276 HTH-like domain AMED_8916 PF00665 Integrase core domain AMED_8916 PF13333 Integrase core domain AMED_8917 PF01527 Transposase AMED_8918 PF12169 DNA polymerase III subunits gamma and tau domain III AMED_8925 PF00005 ABC transporter AMED_8926 PF00528 Binding-protein-dependent transport system inner membrane component AMED_8928 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase AMED_8929 PF00672 HAMP domain AMED_8929 PF00512 His Kinase A (phospho-acceptor) domain AMED_8929 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_8930 PF00486 Transcriptional regulatory protein, C terminal AMED_8930 PF00072 Response regulator receiver domain AMED_8932 PF05384 Sensor protein DegS AMED_8932 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_8932 PF07730 Histidine kinase AMED_8933 PF00072 Response regulator receiver domain AMED_8933 PF00196 Bacterial regulatory proteins, luxR family AMED_8936 PF13305 Tetracyclin repressor-like, C-terminal domain AMED_8936 PF00440 Bacterial regulatory proteins, tetR family AMED_8937 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMED_8937 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMED_8937 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain AMED_8938 PF00756 Putative esterase AMED_8938 PF08310 LGFP repeat AMED_8941 PF03793 PASTA domain AMED_8941 PF00069 Protein kinase domain AMED_8946 PF01580 FtsK/SpoIIIE family AMED_8953 PF09587 Bacterial capsule synthesis protein PGA_cap AMED_8954 PF07858 Limonene-1,2-epoxide hydrolase catalytic domain AMED_8955 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AMED_8959 PF05368 NmrA-like family AMED_8961 PF14437 MafB19-like deaminase AMED_8964 PF04185 Phosphoesterase family AMED_8964 PF05506 Domain of unknown function (DUF756) AMED_8966 PF03928 Haem-degrading AMED_8968 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMED_8968 PF03129 Anticodon binding domain AMED_8968 PF02824 TGS domain AMED_8968 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMED_8969 PF13411 MerR HTH family regulatory protein AMED_8969 PF07739 TipAS antibiotic-recognition domain AMED_8970 PF00528 Binding-protein-dependent transport system inner membrane component AMED_8971 PF00528 Binding-protein-dependent transport system inner membrane component AMED_8972 PF08402 TOBE domain AMED_8972 PF00005 ABC transporter AMED_8974 PF07729 FCD domain AMED_8974 PF00392 Bacterial regulatory proteins, gntR family AMED_8975 PF00701 Dihydrodipicolinate synthetase family AMED_8978 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMED_8978 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMED_8980 PF13538 UvrD-like helicase C-terminal domain AMED_8986 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMED_8986 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMED_8988 PF01207 Dihydrouridine synthase (Dus) AMED_8989 PF17801 Alpha galactosidase C-terminal beta sandwich domain AMED_8989 PF16499 Alpha galactosidase A AMED_8990 PF00652 Ricin-type beta-trefoil lectin domain AMED_8990 PF00331 Glycosyl hydrolase family 10 AMED_8992 PF00392 Bacterial regulatory proteins, gntR family AMED_8992 PF07702 UTRA domain AMED_8993 PF03747 ADP-ribosylglycohydrolase AMED_8994 PF00294 pfkB family carbohydrate kinase AMED_8997 PF00561 alpha/beta hydrolase fold AMED_8998 PF00293 NUDIX domain AMED_8999 PF00990 Diguanylate cyclase, GGDEF domain AMED_8999 PF00072 Response regulator receiver domain AMED_9001 PF03816 Cell envelope-related transcriptional attenuator domain AMED_9002 PF01895 PhoU domain AMED_9003 PF00005 ABC transporter AMED_9004 PF00528 Binding-protein-dependent transport system inner membrane component AMED_9005 PF00528 Binding-protein-dependent transport system inner membrane component AMED_9006 PF12849 PBP superfamily domain AMED_9007 PF00583 Acetyltransferase (GNAT) family AMED_9008 PF00486 Transcriptional regulatory protein, C terminal AMED_9012 PF00581 Rhodanese-like domain AMED_9013 PF07210 Protein of unknown function (DUF1416) AMED_9015 PF08768 Domain of unknown function (DUF1794) AMED_9016 PF02682 Carboxyltransferase domain, subdomain C and D AMED_9017 PF02626 Carboxyltransferase domain, subdomain A and B AMED_9025 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMED_9025 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMED_9027 PF00005 ABC transporter AMED_9030 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMED_9030 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMED_9033 PF00472 RF-1 domain AMED_9034 PF02769 AIR synthase related protein, C-terminal domain AMED_9034 PF00586 AIR synthase related protein, N-terminal domain AMED_9035 PF00156 Phosphoribosyl transferase domain AMED_9042 PF01183 Glycosyl hydrolases family 25 AMED_9043 PF01183 Glycosyl hydrolases family 25 AMED_9047 PF02769 AIR synthase related protein, C-terminal domain AMED_9047 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AMED_9047 PF00586 AIR synthase related protein, N-terminal domain AMED_9048 PF00664 ABC transporter transmembrane region AMED_9048 PF00005 ABC transporter AMED_9049 PF00664 ABC transporter transmembrane region AMED_9049 PF00005 ABC transporter AMED_9051 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase AMED_9052 PF00732 GMC oxidoreductase AMED_9052 PF05199 GMC oxidoreductase AMED_9053 PF00171 Aldehyde dehydrogenase family AMED_9056 PF13350 Tyrosine phosphatase family AMED_9060 PF01259 SAICAR synthetase AMED_9062 PF00005 ABC transporter AMED_9063 PF00528 Binding-protein-dependent transport system inner membrane component AMED_9064 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMED_9065 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMED_9066 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMED_9067 PF10397 Adenylosuccinate lyase C-terminus AMED_9067 PF00206 Lyase AMED_9068 PF13378 Enolase C-terminal domain-like AMED_9068 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMED_9071 PF07729 FCD domain AMED_9071 PF00392 Bacterial regulatory proteins, gntR family AMED_9075 PF01212 Beta-eliminating lyase AMED_9076 PF13419 Haloacid dehalogenase-like hydrolase AMED_9079 PF00155 Aminotransferase class I and II AMED_9080 PF01464 Transglycosylase SLT domain AMED_9086 PF02843 Phosphoribosylglycinamide synthetase, C domain AMED_9086 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AMED_9086 PF02844 Phosphoribosylglycinamide synthetase, N domain AMED_9087 PF03009 Glycerophosphoryl diester phosphodiesterase family AMED_9092 PF00294 pfkB family carbohydrate kinase AMED_9093 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AMED_9093 PF00925 GTP cyclohydrolase II AMED_9094 PF07690 Major Facilitator Superfamily AMED_9095 PF00999 Sodium/hydrogen exchanger family AMED_9096 PF00296 Luciferase-like monooxygenase AMED_9098 PF00709 Adenylosuccinate synthetase AMED_9101 PF06722 Protein of unknown function (DUF1205) AMED_9105 PF00990 Diguanylate cyclase, GGDEF domain AMED_9105 PF00072 Response regulator receiver domain AMED_9106 PF00440 Bacterial regulatory proteins, tetR family AMED_9110 PF01116 Fructose-bisphosphate aldolase class-II AMED_9112 PF00248 Aldo/keto reductase family AMED_9114 PF00743 Flavin-binding monooxygenase-like AMED_9116 PF00111 2Fe-2S iron-sulfur cluster binding domain AMED_9120 PF01979 Amidohydrolase family AMED_9122 PF09335 SNARE associated Golgi protein AMED_9123 PF01850 PIN domain AMED_9125 PF02913 FAD linked oxidases, C-terminal domain AMED_9125 PF01565 FAD binding domain AMED_9126 PF01243 Pyridoxamine 5'-phosphate oxidase AMED_9128 PF07690 Major Facilitator Superfamily AMED_9130 PF09335 SNARE associated Golgi protein AMED_9132 PF03171 2OG-Fe(II) oxygenase superfamily AMED_9132 PF14226 non-haem dioxygenase in morphine synthesis N-terminal AMED_9134 PF00485 Phosphoribulokinase / Uridine kinase family AMED_9135 PF00294 pfkB family carbohydrate kinase AMED_9136 PF00005 ABC transporter AMED_9137 PF02653 Branched-chain amino acid transport system / permease component AMED_9138 PF13407 Periplasmic binding protein domain AMED_9139 PF00356 Bacterial regulatory proteins, lacI family AMED_9140 PF00356 Bacterial regulatory proteins, lacI family AMED_9142 PF01568 Molydopterin dinucleotide binding domain AMED_9142 PF00384 Molybdopterin oxidoreductase AMED_9142 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMED_9148 PF08281 Sigma-70, region 4 AMED_9148 PF12680 SnoaL-like domain AMED_9148 PF04542 Sigma-70 region 2 AMED_9149 PF00156 Phosphoribosyl transferase domain AMED_9151 PF00005 ABC transporter AMED_9152 PF00106 short chain dehydrogenase AMED_9155 PF00004 ATPase family associated with various cellular activities (AAA) AMED_9155 PF10431 C-terminal, D2-small domain, of ClpB protein AMED_9155 PF17871 AAA lid domain AMED_9155 PF07724 AAA domain (Cdc48 subfamily) AMED_9155 PF02861 Clp amino terminal domain, pathogenicity island component AMED_9158 PF00111 2Fe-2S iron-sulfur cluster binding domain AMED_9158 PF00970 Oxidoreductase FAD-binding domain AMED_9158 PF00175 Oxidoreductase NAD-binding domain AMED_9159 PF00111 2Fe-2S iron-sulfur cluster binding domain AMED_9159 PF00175 Oxidoreductase NAD-binding domain AMED_9159 PF00970 Oxidoreductase FAD-binding domain AMED_9160 PF01738 Dienelactone hydrolase family AMED_9161 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AMED_9163 PF13411 MerR HTH family regulatory protein AMED_9164 PF00684 DnaJ central domain AMED_9164 PF00226 DnaJ domain AMED_9164 PF01556 DnaJ C terminal domain AMED_9165 PF01025 GrpE AMED_9166 PF00012 Hsp70 protein AMED_9168 PF01161 Phosphatidylethanolamine-binding protein AMED_9173 PF02665 Nitrate reductase gamma subunit AMED_9173 PF13183 4Fe-4S dicluster domain AMED_9173 PF02754 Cysteine-rich domain AMED_9176 PF00188 Cysteine-rich secretory protein family AMED_9179 PF01494 FAD binding domain AMED_9180 PF00692 dUTPase AMED_9183 PF04542 Sigma-70 region 2 AMED_9183 PF08281 Sigma-70, region 4 AMED_9184 PF03795 YCII-related domain AMED_9185 PF00067 Cytochrome P450 AMED_9190 PF00149 Calcineurin-like phosphoesterase AMED_9191 PF00364 Biotin-requiring enzyme AMED_9191 PF00561 alpha/beta hydrolase fold AMED_9192 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMED_9192 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMED_9194 PF03167 Uracil DNA glycosylase superfamily AMED_9195 PF00196 Bacterial regulatory proteins, luxR family AMED_9195 PF00072 Response regulator receiver domain AMED_9196 PF12806 Acetyl-CoA dehydrogenase C-terminal like AMED_9196 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_9196 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_9196 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_9198 PF07690 Major Facilitator Superfamily AMED_9202 PF00166 Chaperonin 10 Kd subunit AMED_9207 PF00005 ABC transporter AMED_9208 PF00528 Binding-protein-dependent transport system inner membrane component AMED_9209 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMED_9210 PF04174 A circularly permuted ATPgrasp AMED_9212 PF01841 Transglutaminase-like superfamily AMED_9212 PF08379 Bacterial transglutaminase-like N-terminal region AMED_9214 PF00440 Bacterial regulatory proteins, tetR family AMED_9215 PF07687 Peptidase dimerisation domain AMED_9215 PF01546 Peptidase family M20/M25/M40 AMED_9216 PF00676 Dehydrogenase E1 component AMED_9217 PF02779 Transketolase, pyrimidine binding domain AMED_9217 PF02780 Transketolase, C-terminal domain AMED_9218 PF02817 e3 binding domain AMED_9218 PF00364 Biotin-requiring enzyme AMED_9218 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMED_9220 PF00005 ABC transporter AMED_9223 PF04186 FxsA cytoplasmic membrane protein AMED_9231 PF00440 Bacterial regulatory proteins, tetR family AMED_9231 PF08362 YcdC-like protein, C-terminal region AMED_9232 PF01575 MaoC like domain AMED_9234 PF02803 Thiolase, C-terminal domain AMED_9234 PF00108 Thiolase, N-terminal domain AMED_9243 PF00474 Sodium:solute symporter family AMED_9245 PF00561 alpha/beta hydrolase fold AMED_9250 PF00005 ABC transporter AMED_9252 PF00296 Luciferase-like monooxygenase AMED_9253 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain AMED_9253 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain AMED_9256 PF01025 GrpE AMED_9258 PF00350 Dynamin family AMED_9259 PF07730 Histidine kinase AMED_9260 PF00072 Response regulator receiver domain AMED_9260 PF00196 Bacterial regulatory proteins, luxR family AMED_9263 PF00005 ABC transporter AMED_9265 PF00005 ABC transporter AMED_9268 PF02390 Putative methyltransferase AMED_9270 PF00005 ABC transporter AMED_9271 PF05384 Sensor protein DegS AMED_9271 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_9271 PF07730 Histidine kinase AMED_9272 PF00196 Bacterial regulatory proteins, luxR family AMED_9272 PF00072 Response regulator receiver domain AMED_9275 PF01979 Amidohydrolase family AMED_9276 PF00106 short chain dehydrogenase AMED_9277 PF17961 Bacterial Ig domain AMED_9277 PF00746 LPXTG cell wall anchor motif AMED_9277 PF17210 SdrD B-like domain AMED_9277 PF04650 YSIRK type signal peptide AMED_9279 PF07690 Major Facilitator Superfamily AMED_9280 PF01047 MarR family AMED_9281 PF13419 Haloacid dehalogenase-like hydrolase AMED_9283 PF08281 Sigma-70, region 4 AMED_9283 PF04542 Sigma-70 region 2 AMED_9284 PF01658 Myo-inositol-1-phosphate synthase AMED_9285 PF03551 Transcriptional regulator PadR-like family AMED_9286 PF17249 Family of unknown function (DUF5318) AMED_9287 PF00905 Penicillin binding protein transpeptidase domain AMED_9287 PF00912 Transglycosylase AMED_9288 PF00905 Penicillin binding protein transpeptidase domain AMED_9288 PF00912 Transglycosylase AMED_9289 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMED_9289 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMED_9290 PF00480 ROK family AMED_9290 PF01325 Iron dependent repressor, N-terminal DNA binding domain AMED_9292 PF01261 Xylose isomerase-like TIM barrel AMED_9296 PF01250 Ribosomal protein S6 AMED_9297 PF00436 Single-strand binding protein family AMED_9298 PF01084 Ribosomal protein S18 AMED_9299 PF01281 Ribosomal protein L9, N-terminal domain AMED_9299 PF03948 Ribosomal protein L9, C-terminal domain AMED_9304 PF03796 DnaB-like helicase C terminal domain AMED_9304 PF00772 DnaB-like helicase N terminal domain AMED_9304 PF14528 LAGLIDADG-like domain AMED_9304 PF03796 DnaB-like helicase C terminal domain AMED_9304 PF00772 DnaB-like helicase N terminal domain AMED_9304 PF14528 LAGLIDADG-like domain AMED_9307 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AMED_9310 PF01594 AI-2E family transporter AMED_9312 PF00196 Bacterial regulatory proteins, luxR family AMED_9312 PF00072 Response regulator receiver domain AMED_9315 PF07690 Major Facilitator Superfamily AMED_9316 PF05524 PEP-utilising enzyme, N-terminal AMED_9316 PF02896 PEP-utilising enzyme, TIM barrel domain AMED_9316 PF00391 PEP-utilising enzyme, mobile domain AMED_9318 PF00294 pfkB family carbohydrate kinase AMED_9328 PF13305 Tetracyclin repressor-like, C-terminal domain AMED_9328 PF00440 Bacterial regulatory proteins, tetR family AMED_9330 PF08264 Anticodon-binding domain of tRNA AMED_9330 PF13603 Leucyl-tRNA synthetase, Domain 2 AMED_9330 PF09334 tRNA synthetases class I (M) AMED_9333 PF02622 Uncharacterized ACR, COG1678 AMED_9334 PF07690 Major Facilitator Superfamily AMED_9341 PF03747 ADP-ribosylglycohydrolase AMED_9346 PF13735 tRNA nucleotidyltransferase domain 2 putative AMED_9346 PF12627 Probable RNA and SrmB- binding site of polymerase A AMED_9346 PF01743 Poly A polymerase head domain AMED_9347 PF00293 NUDIX domain AMED_9349 PF03023 Lipid II flippase MurJ AMED_9351 PF04542 Sigma-70 region 2 AMED_9351 PF08281 Sigma-70, region 4 AMED_9353 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_9354 PF00085 Thioredoxin AMED_9354 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_9355 PF01520 N-acetylmuramoyl-L-alanine amidase AMED_9355 PF01471 Putative peptidoglycan binding domain AMED_9357 PF00155 Aminotransferase class I and II AMED_9358 PF07478 D-ala D-ala ligase C-terminus AMED_9358 PF01820 D-ala D-ala ligase N-terminus AMED_9359 PF02195 ParB-like nuclease domain AMED_9359 PF17762 HTH domain found in ParB protein AMED_9360 PF13614 AAA domain AMED_9361 PF02527 rRNA small subunit methyltransferase G AMED_9364 PF02096 60Kd inner membrane protein AMED_9365 PF01809 Putative membrane protein insertion efficiency factor AMED_9366 PF00468 Ribosomal protein L34