locus-tag class description Apre_0001 PF00308 Bacterial dnaA protein Apre_0001 PF08299 Bacterial dnaA protein helix-turn-helix Apre_0001 PF11638 DnaA N-terminal domain Apre_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain Apre_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain Apre_0002 PF02767 DNA polymerase III beta subunit, central domain Apre_0004 PF13476 AAA domain Apre_0005 PF00986 DNA gyrase B subunit, carboxyl terminus Apre_0005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Apre_0005 PF01751 Toprim domain Apre_0005 PF00204 DNA gyrase B Apre_0006 PF00521 DNA gyrase/topoisomerase IV, subunit A Apre_0006 PF03989 DNA gyrase C-terminal domain, beta-propeller Apre_0007 PF01740 STAS domain Apre_0008 PF13581 Histidine kinase-like ATPase domain Apre_0009 PF04539 Sigma-70 region 3 Apre_0009 PF04545 Sigma-70, region 4 Apre_0009 PF04542 Sigma-70 region 2 Apre_0014 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Apre_0015 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Apre_0016 PF00528 Binding-protein-dependent transport system inner membrane component Apre_0017 PF00528 Binding-protein-dependent transport system inner membrane component Apre_0017 PF12911 N-terminal TM domain of oligopeptide transport permease C Apre_0018 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Apre_0018 PF00005 ABC transporter Apre_0019 PF00005 ABC transporter Apre_0019 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Apre_0021 PF01380 SIS domain Apre_0027 PF12833 Helix-turn-helix domain Apre_0028 PF01235 Sodium:alanine symporter family Apre_0029 PF00696 Amino acid kinase family Apre_0030 PF17871 AAA lid domain Apre_0030 PF10431 C-terminal, D2-small domain, of ClpB protein Apre_0030 PF07724 AAA domain (Cdc48 subfamily) Apre_0030 PF02861 Clp amino terminal domain, pathogenicity island component Apre_0030 PF00004 ATPase family associated with various cellular activities (AAA) Apre_0031 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Apre_0031 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Apre_0035 PF00455 DeoR C terminal sensor domain Apre_0035 PF08220 DeoR-like helix-turn-helix domain Apre_0036 PF01791 DeoC/LacD family aldolase Apre_0037 PF01676 Metalloenzyme superfamily Apre_0038 PF07662 Na+ dependent nucleoside transporter C-terminus Apre_0038 PF07670 Nucleoside recognition Apre_0038 PF01773 Na+ dependent nucleoside transporter N-terminus Apre_0039 PF00591 Glycosyl transferase family, a/b domain Apre_0039 PF02885 Glycosyl transferase family, helical bundle domain Apre_0039 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain Apre_0041 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Apre_0041 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Apre_0043 PF02653 Branched-chain amino acid transport system / permease component Apre_0044 PF00005 ABC transporter Apre_0044 PF08402 TOBE domain Apre_0047 PF13192 Thioredoxin domain Apre_0047 PF07992 Pyridine nucleotide-disulphide oxidoreductase Apre_0048 PF00578 AhpC/TSA family Apre_0049 PF01680 SOR/SNZ family Apre_0052 PF00528 Binding-protein-dependent transport system inner membrane component Apre_0053 PF08402 TOBE domain Apre_0053 PF00005 ABC transporter Apre_0055 PF02595 Glycerate kinase family Apre_0056 PF01694 Rhomboid family Apre_0058 PF08439 Oligopeptidase F Apre_0058 PF01432 Peptidase family M3 Apre_0059 PF03109 ABC1 family Apre_0060 PF03009 Glycerophosphoryl diester phosphodiesterase family Apre_0061 PF13416 Bacterial extracellular solute-binding protein Apre_0062 PF00528 Binding-protein-dependent transport system inner membrane component Apre_0063 PF00528 Binding-protein-dependent transport system inner membrane component Apre_0064 PF00005 ABC transporter Apre_0064 PF03459 TOBE domain Apre_0064 PF17912 MalK OB fold domain Apre_0069 PF02502 Ribose/Galactose Isomerase Apre_0070 PF02502 Ribose/Galactose Isomerase Apre_0072 PF16874 Glycosyl hydrolase family 36 C-terminal domain Apre_0072 PF16875 Glycosyl hydrolase family 36 N-terminal domain Apre_0073 PF00455 DeoR C terminal sensor domain Apre_0073 PF08220 DeoR-like helix-turn-helix domain Apre_0075 PF01380 SIS domain Apre_0076 PF00392 Bacterial regulatory proteins, gntR family Apre_0076 PF07702 UTRA domain Apre_0077 PF01979 Amidohydrolase family Apre_0078 PF00294 pfkB family carbohydrate kinase Apre_0079 PF01791 DeoC/LacD family aldolase Apre_0081 PF02770 Acyl-CoA dehydrogenase, middle domain Apre_0081 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Apre_0081 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Apre_0082 PF00258 Flavodoxin Apre_0082 PF00753 Metallo-beta-lactamase superfamily Apre_0082 PF00301 Rubredoxin Apre_0083 PF00367 phosphotransferase system, EIIB Apre_0083 PF02378 Phosphotransferase system, EIIC Apre_0086 PF00072 Response regulator receiver domain Apre_0086 PF00486 Transcriptional regulatory protein, C terminal Apre_0087 PF00512 His Kinase A (phospho-acceptor) domain Apre_0087 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Apre_0091 PF01473 Putative cell wall binding repeat Apre_0091 PF02324 Glycosyl hydrolase family 70 Apre_0092 PF00206 Lyase Apre_0092 PF10415 Fumarase C C-terminus Apre_0093 PF00206 Lyase Apre_0093 PF10415 Fumarase C C-terminus Apre_0096 PF00375 Sodium:dicarboxylate symporter family Apre_0097 PF03315 Serine dehydratase beta chain Apre_0098 PF03313 Serine dehydratase alpha chain Apre_0099 PF01235 Sodium:alanine symporter family Apre_0100 PF01554 MatE Apre_0101 PF13419 Haloacid dehalogenase-like hydrolase Apre_0105 PF02558 Ketopantoate reductase PanE/ApbA Apre_0105 PF08546 Ketopantoate reductase PanE/ApbA C terminal Apre_0106 PF01544 CorA-like Mg2+ transporter protein Apre_0108 PF00689 Cation transporting ATPase, C-terminus Apre_0108 PF00690 Cation transporter/ATPase, N-terminus Apre_0109 PF05343 M42 glutamyl aminopeptidase Apre_0110 PF04525 LURP-one-related Apre_0111 PF00356 Bacterial regulatory proteins, lacI family Apre_0111 PF13407 Periplasmic binding protein domain Apre_0114 PF00561 alpha/beta hydrolase fold Apre_0115 PF01575 MaoC like domain Apre_0116 PF01758 Sodium Bile acid symporter family Apre_0117 PF02569 Pantoate-beta-alanine ligase Apre_0118 PF02261 Aspartate decarboxylase Apre_0121 PF02386 Cation transport protein Apre_0122 PF02254 TrkA-N domain Apre_0122 PF02080 TrkA-C domain Apre_0123 PF04298 Putative neutral zinc metallopeptidase Apre_0124 PF05848 CtsR N-terminal HTH domain Apre_0124 PF17727 CtsR C-terminal dimerization domain Apre_0125 PF02151 UvrB/uvrC motif Apre_0126 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain Apre_0127 PF07724 AAA domain (Cdc48 subfamily) Apre_0127 PF17871 AAA lid domain Apre_0127 PF02861 Clp amino terminal domain, pathogenicity island component Apre_0127 PF10431 C-terminal, D2-small domain, of ClpB protein Apre_0127 PF00004 ATPase family associated with various cellular activities (AAA) Apre_0131 PF00528 Binding-protein-dependent transport system inner membrane component Apre_0132 PF00528 Binding-protein-dependent transport system inner membrane component Apre_0133 PF00005 ABC transporter Apre_0133 PF03459 TOBE domain Apre_0133 PF17912 MalK OB fold domain Apre_0134 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Apre_0134 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Apre_0136 PF18073 Rubredoxin metal binding domain Apre_0138 PF14537 Cytochrome c3 Apre_0138 PF00890 FAD binding domain Apre_0140 PF03051 Peptidase C1-like family Apre_0141 PF01238 Phosphomannose isomerase type I Apre_0142 PF03459 TOBE domain Apre_0142 PF00005 ABC transporter Apre_0142 PF17912 MalK OB fold domain Apre_0144 PF00528 Binding-protein-dependent transport system inner membrane component Apre_0145 PF00528 Binding-protein-dependent transport system inner membrane component Apre_0148 PF00963 Cohesin domain Apre_0148 PF00754 F5/8 type C domain Apre_0148 PF00041 Fibronectin type III domain Apre_0148 PF02838 Glycosyl hydrolase family 20, domain 2 Apre_0148 PF07555 beta-N-acetylglucosaminidase Apre_0149 PF01074 Glycosyl hydrolases family 38 N-terminal domain Apre_0149 PF09261 Alpha mannosidase middle domain Apre_0149 PF17677 Glycosyl hydrolases family 38 C-terminal beta sandwich domain Apre_0149 PF07748 Glycosyl hydrolases family 38 C-terminal domain Apre_0149 PF18438 Glycosyl hydrolases family 38 C-terminal domain 1 Apre_0151 PF01380 SIS domain Apre_0151 PF01418 Helix-turn-helix domain, rpiR family Apre_0152 PF00480 ROK family Apre_0153 PF00232 Glycosyl hydrolase family 1 Apre_0154 PF00480 ROK family Apre_0155 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Apre_0155 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain Apre_0155 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family Apre_0156 PF13419 Haloacid dehalogenase-like hydrolase Apre_0159 PF13439 Glycosyltransferase Family 4 Apre_0159 PF00534 Glycosyl transferases group 1 Apre_0160 PF13439 Glycosyltransferase Family 4 Apre_0160 PF00534 Glycosyl transferases group 1 Apre_0166 PF09515 Thiamine transporter protein (Thia_YuaJ) Apre_0168 PF13732 Domain of unknown function (DUF4162) Apre_0168 PF00005 ABC transporter Apre_0170 PF00005 ABC transporter Apre_0172 PF00781 Diacylglycerol kinase catalytic domain Apre_0173 PF02559 CarD-like/TRCF domain Apre_0175 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Apre_0176 PF02542 YgbB family Apre_0177 PF00438 S-adenosylmethionine synthetase, N-terminal domain Apre_0177 PF02773 S-adenosylmethionine synthetase, C-terminal domain Apre_0177 PF02772 S-adenosylmethionine synthetase, central domain Apre_0179 PF00300 Histidine phosphatase superfamily (branch 1) Apre_0181 PF12822 ECF transporter, substrate-specific component Apre_0182 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE Apre_0183 PF00814 Glycoprotease family Apre_0184 PF01047 MarR family Apre_0184 PF00583 Acetyltransferase (GNAT) family Apre_0185 PF00814 Glycoprotease family Apre_0188 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Apre_0188 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Apre_0190 PF01070 FMN-dependent dehydrogenase Apre_0191 PF00392 Bacterial regulatory proteins, gntR family Apre_0192 PF00005 ABC transporter Apre_0194 PF13684 Dihydroxyacetone kinase family Apre_0194 PF02734 DAK2 domain Apre_0195 PF05816 Toxic anion resistance protein (TelA) Apre_0197 PF05193 Peptidase M16 inactive domain Apre_0197 PF00675 Insulinase (Peptidase family M16) Apre_0197 PF08367 Peptidase M16C associated Apre_0199 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Apre_0200 PF03830 PTS system sorbose subfamily IIB component Apre_0200 PF03610 PTS system fructose IIA component Apre_0201 PF03609 PTS system sorbose-specific iic component Apre_0202 PF03613 PTS system mannose/fructose/sorbose family IID component Apre_0204 PF03144 Elongation factor Tu domain 2 Apre_0204 PF14492 Elongation Factor G, domain II Apre_0204 PF03764 Elongation factor G, domain IV Apre_0204 PF00009 Elongation factor Tu GTP binding domain Apre_0204 PF00679 Elongation factor G C-terminus Apre_0205 PF02806 Alpha amylase, C-terminal all-beta domain Apre_0205 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Apre_0205 PF00128 Alpha amylase, catalytic domain Apre_0207 PF00924 Mechanosensitive ion channel Apre_0208 PF06107 Bacterial protein of unknown function (DUF951) Apre_0209 PF11756 Nitrous oxide-stimulated promoter Apre_0213 PF06962 Putative rRNA methylase Apre_0215 PF00005 ABC transporter Apre_0215 PF00664 ABC transporter transmembrane region Apre_0218 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Apre_0218 PF00367 phosphotransferase system, EIIB Apre_0218 PF02378 Phosphotransferase system, EIIC Apre_0225 PF00155 Aminotransferase class I and II Apre_0225 PF00392 Bacterial regulatory proteins, gntR family Apre_0227 PF00005 ABC transporter Apre_0227 PF13732 Domain of unknown function (DUF4162) Apre_0229 PF03949 Malic enzyme, NAD binding domain Apre_0229 PF00390 Malic enzyme, N-terminal domain Apre_0232 PF00753 Metallo-beta-lactamase superfamily Apre_0233 PF01171 PP-loop family Apre_0235 PF00958 GMP synthase C terminal domain Apre_0235 PF00117 Glutamine amidotransferase class-I Apre_0235 PF13302 Acetyltransferase (GNAT) domain Apre_0235 PF13673 Acetyltransferase (GNAT) domain Apre_0235 PF03352 Methyladenine glycosylase Apre_0236 PF12833 Helix-turn-helix domain Apre_0236 PF02311 AraC-like ligand binding domain Apre_0237 PF16875 Glycosyl hydrolase family 36 N-terminal domain Apre_0237 PF16874 Glycosyl hydrolase family 36 C-terminal domain Apre_0238 PF01547 Bacterial extracellular solute-binding protein Apre_0239 PF00528 Binding-protein-dependent transport system inner membrane component Apre_0240 PF00528 Binding-protein-dependent transport system inner membrane component Apre_0241 PF00128 Alpha amylase, catalytic domain Apre_0242 PF00005 ABC transporter Apre_0242 PF03459 TOBE domain Apre_0242 PF17912 MalK OB fold domain Apre_0243 PF00128 Alpha amylase, catalytic domain Apre_0244 PF03616 Sodium/glutamate symporter Apre_0245 PF00535 Glycosyl transferase family 2 Apre_0252 PF00005 ABC transporter Apre_0252 PF17912 MalK OB fold domain Apre_0254 PF00528 Binding-protein-dependent transport system inner membrane component Apre_0255 PF13416 Bacterial extracellular solute-binding protein Apre_0260 PF00398 Ribosomal RNA adenine dimethylase Apre_0262 PF00860 Permease family Apre_0266 PF03572 Peptidase family S41 Apre_0266 PF13180 PDZ domain Apre_0266 PF01471 Putative peptidoglycan binding domain Apre_0267 PF00571 CBS domain Apre_0267 PF01769 Divalent cation transporter Apre_0267 PF03448 MgtE intracellular N domain Apre_0271 PF04055 Radical SAM superfamily Apre_0271 PF06968 Biotin and Thiamin Synthesis associated domain Apre_0272 PF01926 50S ribosome-binding GTPase Apre_0272 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Apre_0274 PF00005 ABC transporter Apre_0274 PF09383 NIL domain Apre_0275 PF00528 Binding-protein-dependent transport system inner membrane component Apre_0276 PF03180 NLPA lipoprotein Apre_0277 PF03180 NLPA lipoprotein Apre_0278 PF00375 Sodium:dicarboxylate symporter family Apre_0280 PF04204 Homoserine O-succinyltransferase Apre_0281 PF01053 Cys/Met metabolism PLP-dependent enzyme Apre_0282 PF00255 Glutathione peroxidase Apre_0284 PF08264 Anticodon-binding domain of tRNA Apre_0284 PF00133 tRNA synthetases class I (I, L, M and V) Apre_0285 PF00293 NUDIX domain Apre_0286 PF02388 FemAB family Apre_0287 PF00005 ABC transporter Apre_0287 PF12704 MacB-like periplasmic core domain Apre_0287 PF02687 FtsX-like permease family Apre_0289 PF02687 FtsX-like permease family Apre_0289 PF12704 MacB-like periplasmic core domain Apre_0289 PF00005 ABC transporter Apre_0291 PF02590 Predicted SPOUT methyltransferase Apre_0293 PF04324 BFD-like [2Fe-2S] binding domain Apre_0293 PF01266 FAD dependent oxidoreductase Apre_0294 PF00230 Major intrinsic protein Apre_0302 PF01757 Acyltransferase family Apre_0303 PF00877 NlpC/P60 family Apre_0305 PF04960 Glutaminase Apre_0310 PF06081 Aromatic acid exporter family member 1 Apre_0315 PF04055 Radical SAM superfamily Apre_0316 PF01546 Peptidase family M20/M25/M40 Apre_0316 PF07687 Peptidase dimerisation domain Apre_0317 PF01869 BadF/BadG/BcrA/BcrD ATPase family Apre_0319 PF05437 Branched-chain amino acid transport protein (AzlD) Apre_0320 PF03591 AzlC protein Apre_0327 PF12127 SigmaW regulon antibacterial Apre_0329 PF02562 PhoH-like protein Apre_0330 PF02130 Uncharacterized protein family UPF0054 Apre_0331 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Apre_0332 PF07650 KH domain Apre_0332 PF01926 50S ribosome-binding GTPase Apre_0333 PF02565 Recombination protein O C terminal Apre_0333 PF11967 Recombination protein O N terminal Apre_0336 PF03618 Kinase/pyrophosphorylase Apre_0337 PF00958 GMP synthase C terminal domain Apre_0337 PF00117 Glutamine amidotransferase class-I Apre_0344 PF03601 Conserved hypothetical protein 698 Apre_0345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Apre_0345 PF03466 LysR substrate binding domain Apre_0346 PF01555 DNA methylase Apre_0347 PF04851 Type III restriction enzyme, res subunit Apre_0349 PF05872 Bacterial protein of unknown function (DUF853) Apre_0351 PF00004 ATPase family associated with various cellular activities (AAA) Apre_0351 PF10431 C-terminal, D2-small domain, of ClpB protein Apre_0351 PF17871 AAA lid domain Apre_0351 PF02861 Clp amino terminal domain, pathogenicity island component Apre_0351 PF07724 AAA domain (Cdc48 subfamily) Apre_0352 PF01022 Bacterial regulatory protein, arsR family Apre_0353 PF06953 Arsenical resistance operon trans-acting repressor ArsD Apre_0354 PF02374 Anion-transporting ATPase Apre_0355 PF01451 Low molecular weight phosphotyrosine protein phosphatase Apre_0356 PF01758 Sodium Bile acid symporter family Apre_0357 PF01979 Amidohydrolase family Apre_0358 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Apre_0358 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Apre_0358 PF00111 2Fe-2S iron-sulfur cluster binding domain Apre_0358 PF01799 [2Fe-2S] binding domain Apre_0361 PF13478 XdhC Rossmann domain Apre_0361 PF02625 XdhC and CoxI family Apre_0362 PF13478 XdhC Rossmann domain Apre_0362 PF02625 XdhC and CoxI family Apre_0364 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Apre_0365 PF00266 Aminotransferase class-V Apre_0368 PF02769 AIR synthase related protein, C-terminal domain Apre_0368 PF00586 AIR synthase related protein, N-terminal domain Apre_0370 PF02457 DisA bacterial checkpoint controller nucleotide-binding Apre_0372 PF13735 tRNA nucleotidyltransferase domain 2 putative Apre_0372 PF12627 Probable RNA and SrmB- binding site of polymerase A Apre_0372 PF01743 Poly A polymerase head domain Apre_0373 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Apre_0373 PF05697 Bacterial trigger factor protein (TF) Apre_0373 PF05698 Bacterial trigger factor protein (TF) C-terminus Apre_0374 PF00574 Clp protease Apre_0375 PF07724 AAA domain (Cdc48 subfamily) Apre_0375 PF06689 ClpX C4-type zinc finger Apre_0375 PF10431 C-terminal, D2-small domain, of ClpB protein Apre_0376 PF00004 ATPase family associated with various cellular activities (AAA) Apre_0376 PF02190 ATP-dependent protease La (LON) substrate-binding domain Apre_0376 PF05362 Lon protease (S16) C-terminal proteolytic domain Apre_0377 PF01926 50S ribosome-binding GTPase Apre_0378 PF04205 FMN-binding domain Apre_0378 PF00890 FAD binding domain Apre_0379 PF03932 CutC family Apre_0380 PF00156 Phosphoribosyl transferase domain Apre_0381 PF08220 DeoR-like helix-turn-helix domain Apre_0381 PF00455 DeoR C terminal sensor domain Apre_0382 PF00294 pfkB family carbohydrate kinase Apre_0383 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Apre_0383 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Apre_0385 PF02127 Aminopeptidase I zinc metalloprotease (M18) Apre_0386 PF01910 Thiamine-binding protein Apre_0387 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Apre_0388 PF00528 Binding-protein-dependent transport system inner membrane component Apre_0389 PF00528 Binding-protein-dependent transport system inner membrane component Apre_0390 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Apre_0390 PF00005 ABC transporter Apre_0391 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Apre_0391 PF00005 ABC transporter Apre_0392 PF17099 Tryptophan transporter TrpP Apre_0393 PF00860 Permease family Apre_0394 PF00571 CBS domain Apre_0394 PF03471 Transporter associated domain Apre_0394 PF01595 Cyclin M transmembrane N-terminal domain Apre_0395 PF00571 CBS domain Apre_0395 PF02833 DHHA2 domain Apre_0395 PF01368 DHH family Apre_0395 PF07085 DRTGG domain Apre_0396 PF00293 NUDIX domain Apre_0397 PF00375 Sodium:dicarboxylate symporter family Apre_0401 PF00183 Hsp90 protein Apre_0402 PF02127 Aminopeptidase I zinc metalloprotease (M18) Apre_0404 PF02811 PHP domain Apre_0407 PF00005 ABC transporter Apre_0411 PF01594 AI-2E family transporter Apre_0413 PF02446 4-alpha-glucanotransferase Apre_0414 PF00343 Carbohydrate phosphorylase Apre_0415 PF02535 ZIP Zinc transporter Apre_0417 PF00005 ABC transporter Apre_0417 PF00664 ABC transporter transmembrane region Apre_0418 PF00005 ABC transporter Apre_0418 PF00664 ABC transporter transmembrane region Apre_0427 PF01554 MatE Apre_0429 PF13091 PLD-like domain Apre_0430 PF00392 Bacterial regulatory proteins, gntR family Apre_0431 PF00005 ABC transporter Apre_0433 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Apre_0435 PF00294 pfkB family carbohydrate kinase Apre_0436 PF01225 Mur ligase family, catalytic domain Apre_0436 PF08245 Mur ligase middle domain Apre_0436 PF02875 Mur ligase family, glutamate ligase domain Apre_0437 PF07478 D-ala D-ala ligase C-terminus Apre_0437 PF01820 D-ala D-ala ligase N-terminus Apre_0440 PF05167 Uncharacterised ACR (DUF711) Apre_0441 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Apre_0442 PF00120 Glutamine synthetase, catalytic domain Apre_0442 PF12437 Glutamine synthetase type III N terminal Apre_0442 PF18318 Glutamine synthetase C-terminal domain Apre_0443 PF06874 Firmicute fructose-1,6-bisphosphatase Apre_0446 PF04563 RNA polymerase beta subunit Apre_0446 PF04561 RNA polymerase Rpb2, domain 2 Apre_0446 PF00562 RNA polymerase Rpb2, domain 6 Apre_0446 PF04565 RNA polymerase Rpb2, domain 3 Apre_0446 PF10385 RNA polymerase beta subunit external 1 domain Apre_0446 PF04560 RNA polymerase Rpb2, domain 7 Apre_0447 PF04997 RNA polymerase Rpb1, domain 1 Apre_0447 PF00623 RNA polymerase Rpb1, domain 2 Apre_0447 PF04983 RNA polymerase Rpb1, domain 3 Apre_0447 PF04998 RNA polymerase Rpb1, domain 5 Apre_0447 PF05000 RNA polymerase Rpb1, domain 4 Apre_0449 PF00654 Voltage gated chloride channel Apre_0450 PF08000 Bacterial PH domain Apre_0451 PF01554 MatE Apre_0452 PF08534 Redoxin Apre_0453 PF02378 Phosphotransferase system, EIIC Apre_0453 PF00367 phosphotransferase system, EIIB Apre_0454 PF02056 Family 4 glycosyl hydrolase Apre_0454 PF11975 Family 4 glycosyl hydrolase C-terminal domain Apre_0456 PF01380 SIS domain Apre_0456 PF01418 Helix-turn-helix domain, rpiR family Apre_0457 PF00164 Ribosomal protein S12/S23 Apre_0458 PF00177 Ribosomal protein S7p/S5e Apre_0459 PF00679 Elongation factor G C-terminus Apre_0459 PF14492 Elongation Factor G, domain II Apre_0459 PF03144 Elongation factor Tu domain 2 Apre_0459 PF00009 Elongation factor Tu GTP binding domain Apre_0459 PF03764 Elongation factor G, domain IV Apre_0460 PF03143 Elongation factor Tu C-terminal domain Apre_0460 PF00009 Elongation factor Tu GTP binding domain Apre_0460 PF03144 Elongation factor Tu domain 2 Apre_0461 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment Apre_0461 PF01297 Zinc-uptake complex component A periplasmic Apre_0462 PF00005 ABC transporter Apre_0463 PF00950 ABC 3 transport family Apre_0465 PF00528 Binding-protein-dependent transport system inner membrane component Apre_0466 PF12911 N-terminal TM domain of oligopeptide transport permease C Apre_0466 PF00528 Binding-protein-dependent transport system inner membrane component Apre_0467 PF00005 ABC transporter Apre_0467 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Apre_0468 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Apre_0468 PF00005 ABC transporter Apre_0469 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Apre_0473 PF02378 Phosphotransferase system, EIIC Apre_0473 PF00367 phosphotransferase system, EIIB Apre_0474 PF00128 Alpha amylase, catalytic domain Apre_0474 PF16657 Maltogenic Amylase, C-terminal domain Apre_0478 PF00005 ABC transporter Apre_0479 PF00128 Alpha amylase, catalytic domain Apre_0480 PF00375 Sodium:dicarboxylate symporter family Apre_0482 PF03576 Peptidase family S58 Apre_0483 PF01250 Ribosomal protein S6 Apre_0484 PF00436 Single-strand binding protein family Apre_0485 PF01084 Ribosomal protein S18 Apre_0486 PF03030 Inorganic H+ pyrophosphatase Apre_0487 PF00764 Arginosuccinate synthase Apre_0488 PF14698 Argininosuccinate lyase C-terminal Apre_0488 PF00206 Lyase Apre_0489 PF00497 Bacterial extracellular solute-binding proteins, family 3 Apre_0490 PF00005 ABC transporter Apre_0491 PF08544 GHMP kinases C terminal Apre_0491 PF00288 GHMP kinases N terminal domain Apre_0492 PF01177 Asp/Glu/Hydantoin racemase Apre_0493 PF02541 Ppx/GppA phosphatase family Apre_0494 PF13089 Polyphosphate kinase N-terminal domain Apre_0494 PF13090 Polyphosphate kinase C-terminal domain 2 Apre_0494 PF17941 Polyphosphate kinase C-terminal domain 1 Apre_0494 PF02503 Polyphosphate kinase middle domain Apre_0495 PF02557 D-alanyl-D-alanine carboxypeptidase Apre_0496 PF01042 Endoribonuclease L-PSP Apre_0497 PF01546 Peptidase family M20/M25/M40 Apre_0497 PF07687 Peptidase dimerisation domain Apre_0498 PF00578 AhpC/TSA family Apre_0500 PF01297 Zinc-uptake complex component A periplasmic Apre_0501 PF00005 ABC transporter Apre_0502 PF00950 ABC 3 transport family Apre_0503 PF00171 Aldehyde dehydrogenase family Apre_0504 PF00258 Flavodoxin Apre_0504 PF00753 Metallo-beta-lactamase superfamily Apre_0504 PF00301 Rubredoxin Apre_0505 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Apre_0505 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Apre_0505 PF02770 Acyl-CoA dehydrogenase, middle domain Apre_0507 PF02540 NAD synthase Apre_0508 PF00149 Calcineurin-like phosphoesterase Apre_0510 PF00375 Sodium:dicarboxylate symporter family Apre_0515 PF01475 Ferric uptake regulator family Apre_0516 PF01297 Zinc-uptake complex component A periplasmic Apre_0517 PF00005 ABC transporter Apre_0518 PF00950 ABC 3 transport family Apre_0519 PF03883 Peroxide stress protein YaaA Apre_0520 PF00149 Calcineurin-like phosphoesterase Apre_0520 PF12320 Type 5 capsule protein repressor C-terminal domain Apre_0521 PF13476 AAA domain Apre_0523 PF00580 UvrD/REP helicase N-terminal domain Apre_0523 PF13361 UvrD-like helicase C-terminal domain Apre_0523 PF12705 PD-(D/E)XK nuclease superfamily Apre_0528 PF00005 ABC transporter Apre_0529 PF02335 Cytochrome c552 Apre_0530 PF05140 ResB-like family Apre_0533 PF02272 DHHA1 domain Apre_0533 PF01368 DHH family Apre_0534 PF01281 Ribosomal protein L9, N-terminal domain Apre_0534 PF03948 Ribosomal protein L9, C-terminal domain Apre_0535 PF03796 DnaB-like helicase C terminal domain Apre_0535 PF00772 DnaB-like helicase N terminal domain Apre_0538 PF00308 Bacterial dnaA protein Apre_0538 PF11638 DnaA N-terminal domain Apre_0538 PF08299 Bacterial dnaA protein helix-turn-helix Apre_0539 PF03853 YjeF-related protein N-terminus Apre_0540 PF13807 G-rich domain on putative tyrosine kinase Apre_0540 PF02706 Chain length determinant protein Apre_0541 PF13614 AAA domain Apre_0545 PF00248 Aldo/keto reductase family Apre_0546 PF00199 Catalase Apre_0546 PF06628 Catalase-related immune-responsive Apre_0547 PF00440 Bacterial regulatory proteins, tetR family Apre_0547 PF17922 Tetracyclin repressor-like, C-terminal domain Apre_0548 PF03176 MMPL family Apre_0550 PF13247 4Fe-4S dicluster domain Apre_0550 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Apre_0550 PF07992 Pyridine nucleotide-disulphide oxidoreductase Apre_0551 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Apre_0551 PF00175 Oxidoreductase NAD-binding domain Apre_0552 PF00005 ABC transporter Apre_0552 PF00664 ABC transporter transmembrane region Apre_0553 PF00684 DnaJ central domain Apre_0553 PF01556 DnaJ C terminal domain Apre_0553 PF00226 DnaJ domain Apre_0556 PF01625 Peptide methionine sulfoxide reductase Apre_0556 PF01641 SelR domain Apre_0560 PF03965 Penicillinase repressor Apre_0565 PF00266 Aminotransferase class-V Apre_0574 PF01968 Hydantoinase/oxoprolinase Apre_0574 PF05378 Hydantoinase/oxoprolinase N-terminal region Apre_0576 PF02615 Malate/L-lactate dehydrogenase Apre_0578 PF03309 Type III pantothenate kinase Apre_0580 PF01757 Acyltransferase family Apre_0581 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Apre_0581 PF02403 Seryl-tRNA synthetase N-terminal domain Apre_0582 PF03372 Endonuclease/Exonuclease/phosphatase family Apre_0583 PF01479 S4 domain Apre_0583 PF00849 RNA pseudouridylate synthase Apre_0584 PF13335 Magnesium chelatase, subunit ChlI C-terminal Apre_0584 PF01078 Magnesium chelatase, subunit ChlI Apre_0585 PF00437 Type II/IV secretion system protein Apre_0591 PF01381 Helix-turn-helix Apre_0594 PF01255 Putative undecaprenyl diphosphate synthase Apre_0596 PF17820 PDZ domain Apre_0596 PF02163 Peptidase family M50 Apre_0597 PF04551 GcpE protein Apre_0598 PF01336 OB-fold nucleic acid binding domain Apre_0598 PF00929 Exonuclease Apre_0598 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Apre_0598 PF14579 Helix-hairpin-helix motif Apre_0598 PF11490 DNA polymerase III polC-type N-terminus II Apre_0598 PF02811 PHP domain Apre_0598 PF07733 Bacterial DNA polymerase III alpha NTPase domain Apre_0599 PF17573 GA-like domain Apre_0599 PF00746 LPXTG cell wall anchor motif Apre_0599 PF18656 Family of unknown function (DUF5633) Apre_0605 PF02554 Carbon starvation protein CstA Apre_0606 PF17384 RimP C-terminal SH3 domain Apre_0606 PF02576 RimP N-terminal domain Apre_0607 PF13184 NusA-like KH domain Apre_0607 PF08529 NusA N-terminal domain Apre_0607 PF00575 S1 RNA binding domain Apre_0609 PF04760 Translation initiation factor IF-2, N-terminal region Apre_0609 PF11987 Translation-initiation factor 2 Apre_0609 PF00009 Elongation factor Tu GTP binding domain Apre_0611 PF01368 DHH family Apre_0611 PF02272 DHHA1 domain Apre_0612 PF16198 tRNA pseudouridylate synthase B C-terminal domain Apre_0612 PF01509 TruB family pseudouridylate synthase (N terminal domain) Apre_0613 PF01687 Riboflavin kinase Apre_0613 PF06574 FAD synthetase Apre_0614 PF00312 Ribosomal protein S15 Apre_0615 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Apre_0615 PF03725 3' exoribonuclease family, domain 2 Apre_0615 PF00575 S1 RNA binding domain Apre_0615 PF00013 KH domain Apre_0615 PF01138 3' exoribonuclease family, domain 1 Apre_0616 PF01580 FtsK/SpoIIIE family Apre_0616 PF17854 FtsK alpha domain Apre_0616 PF09397 Ftsk gamma domain Apre_0617 PF01066 CDP-alcohol phosphatidyltransferase Apre_0618 PF00154 recA bacterial DNA recombination protein Apre_0619 PF00817 impB/mucB/samB family Apre_0619 PF11799 impB/mucB/samB family C-terminal domain Apre_0619 PF11798 IMS family HHH motif Apre_0620 PF01479 S4 domain Apre_0622 PF11734 TilS substrate C-terminal domain Apre_0622 PF01171 PP-loop family Apre_0625 PF03309 Type III pantothenate kinase Apre_0626 PF01207 Dihydrouridine synthase (Dus) Apre_0627 PF03449 Transcription elongation factor, N-terminal Apre_0627 PF01272 Transcription elongation factor, GreA/GreB, C-term Apre_0628 PF01336 OB-fold nucleic acid binding domain Apre_0628 PF00152 tRNA synthetases class II (D, K and N) Apre_0633 PF00781 Diacylglycerol kinase catalytic domain Apre_0635 PF01032 FecCD transport family Apre_0636 PF01032 FecCD transport family Apre_0637 PF00005 ABC transporter Apre_0638 PF09587 Bacterial capsule synthesis protein PGA_cap Apre_0639 PF01569 PAP2 superfamily Apre_0642 PF00005 ABC transporter Apre_0643 PF00486 Transcriptional regulatory protein, C terminal Apre_0643 PF00072 Response regulator receiver domain Apre_0644 PF02702 Osmosensitive K+ channel His kinase sensor domain Apre_0644 PF00512 His Kinase A (phospho-acceptor) domain Apre_0644 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Apre_0644 PF13493 Domain of unknown function (DUF4118) Apre_0645 PF01554 MatE Apre_0646 PF00696 Amino acid kinase family Apre_0647 PF01765 Ribosome recycling factor Apre_0648 PF00482 Type II secretion system (T2SS), protein F Apre_0649 PF00114 Pilin (bacterial filament) Apre_0649 PF07963 Prokaryotic N-terminal methylation motif Apre_0650 PF06750 Bacterial Peptidase A24 N-terminal domain Apre_0650 PF01478 Type IV leader peptidase family Apre_0655 PF00871 Acetokinase family Apre_0656 PF01783 Ribosomal L32p protein family Apre_0657 PF02504 Fatty acid synthesis protein Apre_0658 PF00550 Phosphopantetheine attachment site Apre_0659 PF00035 Double-stranded RNA binding motif Apre_0659 PF14622 Ribonuclease-III-like Apre_0661 PF02463 RecF/RecN/SMC N terminal domain Apre_0661 PF06470 SMC proteins Flexible Hinge Domain Apre_0663 PF02911 Formyl transferase, C-terminal domain Apre_0663 PF00551 Formyl transferase Apre_0664 PF01029 NusB family Apre_0664 PF01189 16S rRNA methyltransferase RsmB/F Apre_0665 PF04055 Radical SAM superfamily Apre_0667 PF00069 Protein kinase domain Apre_0667 PF03793 PASTA domain Apre_0668 PF03193 RsgA GTPase Apre_0668 PF16745 RsgA N-terminal domain Apre_0669 PF00834 Ribulose-phosphate 3 epimerase family Apre_0670 PF00830 Ribosomal L28 family Apre_0672 PF03668 P-loop ATPase protein family Apre_0674 PF14527 WhiA LAGLIDADG-like domain Apre_0674 PF02650 WhiA C-terminal HTH domain Apre_0674 PF10298 WhiA N-terminal LAGLIDADG-like domain Apre_0675 PF07733 Bacterial DNA polymerase III alpha NTPase domain Apre_0675 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Apre_0675 PF14579 Helix-hairpin-helix motif Apre_0675 PF02811 PHP domain Apre_0675 PF01336 OB-fold nucleic acid binding domain Apre_0676 PF00365 Phosphofructokinase Apre_0677 PF00391 PEP-utilising enzyme, mobile domain Apre_0677 PF02887 Pyruvate kinase, alpha/beta domain Apre_0677 PF00224 Pyruvate kinase, barrel domain Apre_0678 PF05958 tRNA (Uracil-5-)-methyltransferase Apre_0684 PF00440 Bacterial regulatory proteins, tetR family Apre_0684 PF17922 Tetracyclin repressor-like, C-terminal domain Apre_0685 PF00528 Binding-protein-dependent transport system inner membrane component Apre_0686 PF12911 N-terminal TM domain of oligopeptide transport permease C Apre_0686 PF00528 Binding-protein-dependent transport system inner membrane component Apre_0687 PF00005 ABC transporter Apre_0687 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Apre_0688 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Apre_0688 PF00005 ABC transporter Apre_0689 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Apre_0690 PF00664 ABC transporter transmembrane region Apre_0690 PF00005 ABC transporter Apre_0691 PF00664 ABC transporter transmembrane region Apre_0691 PF00005 ABC transporter Apre_0693 PF02796 Helix-turn-helix domain of resolvase Apre_0693 PF00239 Resolvase, N terminal domain Apre_0701 PF01297 Zinc-uptake complex component A periplasmic Apre_0702 PF00005 ABC transporter Apre_0703 PF00950 ABC 3 transport family Apre_0704 PF00950 ABC 3 transport family Apre_0707 PF00005 ABC transporter Apre_0707 PF00664 ABC transporter transmembrane region Apre_0708 PF00664 ABC transporter transmembrane region Apre_0708 PF00005 ABC transporter Apre_0711 PF01209 ubiE/COQ5 methyltransferase family Apre_0721 PF02814 UreE urease accessory protein, N-terminal domain Apre_0721 PF05194 UreE urease accessory protein, C-terminal domain Apre_0722 PF01730 UreF Apre_0723 PF02492 CobW/HypB/UreG, nucleotide-binding domain Apre_0724 PF01774 UreD urease accessory protein Apre_0726 PF00699 Urease beta subunit Apre_0726 PF00547 Urease, gamma subunit Apre_0727 PF00449 Urease alpha-subunit, N-terminal domain Apre_0727 PF01979 Amidohydrolase family Apre_0741 PF00486 Transcriptional regulatory protein, C terminal Apre_0741 PF00072 Response regulator receiver domain Apre_0742 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Apre_0742 PF00672 HAMP domain Apre_0742 PF13426 PAS domain Apre_0742 PF00512 His Kinase A (phospho-acceptor) domain Apre_0743 PF12704 MacB-like periplasmic core domain Apre_0743 PF02687 FtsX-like permease family Apre_0743 PF00005 ABC transporter Apre_0747 PF16921 Tex protein YqgF-like domain Apre_0747 PF00575 S1 RNA binding domain Apre_0747 PF17674 HHH domain Apre_0747 PF09371 Tex-like protein N-terminal domain Apre_0748 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Apre_0748 PF03129 Anticodon binding domain Apre_0748 PF04073 Aminoacyl-tRNA editing domain Apre_0749 PF01116 Fructose-bisphosphate aldolase class-II Apre_0750 PF07498 Rho termination factor, N-terminal domain Apre_0750 PF07497 Rho termination factor, RNA-binding domain Apre_0750 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Apre_0751 PF01197 Ribosomal protein L31 Apre_0752 PF17827 PrmC N-terminal domain Apre_0752 PF05175 Methyltransferase small domain Apre_0753 PF00472 RF-1 domain Apre_0753 PF03462 PCRF domain Apre_0755 PF03481 Putative GTP-binding controlling metal-binding Apre_0755 PF01300 Telomere recombination Apre_0757 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Apre_0758 PF14490 Helix-hairpin-helix containing domain Apre_0758 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain Apre_0758 PF13538 UvrD-like helicase C-terminal domain Apre_0759 PF00156 Phosphoribosyl transferase domain Apre_0760 PF01098 Cell cycle protein Apre_0761 PF00730 HhH-GPD superfamily base excision DNA repair protein Apre_0761 PF00633 Helix-hairpin-helix motif Apre_0761 PF10576 Iron-sulfur binding domain of endonuclease III Apre_0763 PF00588 SpoU rRNA Methylase family Apre_0764 PF07992 Pyridine nucleotide-disulphide oxidoreductase Apre_0765 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Apre_0765 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Apre_0766 PF00162 Phosphoglycerate kinase Apre_0767 PF00121 Triosephosphate isomerase Apre_0768 PF03952 Enolase, N-terminal domain Apre_0768 PF00113 Enolase, C-terminal TIM barrel domain Apre_0770 PF17876 Cold shock domain Apre_0770 PF00575 S1 RNA binding domain Apre_0770 PF00773 RNB domain Apre_0770 PF08206 Ribonuclease B OB domain Apre_0771 PF01668 SmpB protein Apre_0772 PF02511 Thymidylate synthase complementing protein Apre_0773 PF00005 ABC transporter Apre_0775 PF00300 Histidine phosphatase superfamily (branch 1) Apre_0780 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Apre_0780 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Apre_0781 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain Apre_0781 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain Apre_0782 PF01979 Amidohydrolase family Apre_0783 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Apre_0784 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Apre_0785 PF01180 Dihydroorotate dehydrogenase Apre_0788 PF02806 Alpha amylase, C-terminal all-beta domain Apre_0788 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Apre_0788 PF00128 Alpha amylase, catalytic domain Apre_0790 PF12169 DNA polymerase III subunits gamma and tau domain III Apre_0791 PF02575 YbaB/EbfC DNA-binding family Apre_0792 PF13662 Toprim domain Apre_0792 PF02132 RecR protein Apre_0794 PF00251 Glycosyl hydrolases family 32 N-terminal domain Apre_0794 PF08244 Glycosyl hydrolases family 32 C terminal Apre_0795 PF14659 Phage integrase, N-terminal SAM-like domain Apre_0795 PF00589 Phage integrase family Apre_0797 PF01726 LexA DNA binding domain Apre_0797 PF00717 Peptidase S24-like Apre_0811 PF00436 Single-strand binding protein family Apre_0832 PF00438 S-adenosylmethionine synthetase, N-terminal domain Apre_0832 PF02772 S-adenosylmethionine synthetase, central domain Apre_0832 PF02773 S-adenosylmethionine synthetase, C-terminal domain Apre_0868 PF00132 Bacterial transferase hexapeptide (six repeats) Apre_0868 PF00483 Nucleotidyl transferase Apre_0869 PF00483 Nucleotidyl transferase Apre_0870 PF08323 Starch synthase catalytic domain Apre_0870 PF00534 Glycosyl transferases group 1 Apre_0871 PF00343 Carbohydrate phosphorylase Apre_0872 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Apre_0872 PF03714 Bacterial pullanase-associated domain Apre_0872 PF00128 Alpha amylase, catalytic domain Apre_0873 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Apre_0873 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Apre_0873 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Apre_0873 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Apre_0874 PF16697 Inner membrane component of T3SS, cytoplasmic domain Apre_0875 PF01098 Cell cycle protein Apre_0876 PF00905 Penicillin binding protein transpeptidase domain Apre_0877 PF01513 ATP-NAD kinase Apre_0878 PF00849 RNA pseudouridylate synthase Apre_0878 PF01479 S4 domain Apre_0879 PF12732 YtxH-like protein Apre_0881 PF00356 Bacterial regulatory proteins, lacI family Apre_0882 PF00381 PTS HPr component phosphorylation site Apre_0883 PF02896 PEP-utilising enzyme, TIM barrel domain Apre_0883 PF05524 PEP-utilising enzyme, N-terminal Apre_0883 PF00391 PEP-utilising enzyme, mobile domain Apre_0885 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Apre_0885 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Apre_0886 PF13509 S1 domain Apre_0886 PF17783 CvfB-like winged helix domain Apre_0888 PF07687 Peptidase dimerisation domain Apre_0888 PF01546 Peptidase family M20/M25/M40 Apre_0893 PF00849 RNA pseudouridylate synthase Apre_0893 PF01479 S4 domain Apre_0894 PF00480 ROK family Apre_0895 PF00486 Transcriptional regulatory protein, C terminal Apre_0895 PF00072 Response regulator receiver domain Apre_0896 PF16736 Single Cache-like Apre_0896 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Apre_0896 PF00512 His Kinase A (phospho-acceptor) domain Apre_0896 PF00989 PAS fold Apre_0898 PF01725 Ham1 family Apre_0903 PF02075 Crossover junction endodeoxyribonuclease RuvC Apre_0904 PF01330 RuvA N terminal domain Apre_0904 PF07499 RuvA, C-terminal domain Apre_0905 PF05496 Holliday junction DNA helicase RuvB P-loop domain Apre_0905 PF17864 RuvB AAA lid domain Apre_0905 PF05491 RuvB C-terminal winged helix domain Apre_0906 PF02547 Queuosine biosynthesis protein Apre_0907 PF01702 Queuine tRNA-ribosyltransferase Apre_0909 PF17768 RecJ OB domain Apre_0909 PF02272 DHHA1 domain Apre_0909 PF01368 DHH family Apre_0910 PF02824 TGS domain Apre_0910 PF04607 Region found in RelA / SpoT proteins Apre_0910 PF13291 ACT domain Apre_0911 PF02580 D-Tyr-tRNA(Tyr) deacylase Apre_0912 PF00753 Metallo-beta-lactamase superfamily Apre_0913 PF02938 GAD domain Apre_0913 PF00152 tRNA synthetases class II (D, K and N) Apre_0913 PF01336 OB-fold nucleic acid binding domain Apre_0915 PF00464 Serine hydroxymethyltransferase Apre_0916 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Apre_0916 PF01926 50S ribosome-binding GTPase Apre_0917 PF02660 Glycerol-3-phosphate acyltransferase Apre_0918 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Apre_0918 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Apre_0919 PF04472 Cell division protein SepF Apre_0921 PF01252 Signal peptidase (SPase) II Apre_0922 PF03167 Uracil DNA glycosylase superfamily Apre_0924 PF00266 Aminotransferase class-V Apre_0925 PF02568 Thiamine biosynthesis protein (ThiI) Apre_0925 PF02926 THUMP domain Apre_0926 PF00829 Ribosomal prokaryotic L21 protein Apre_0927 PF04327 Cysteine protease Prp Apre_0928 PF01016 Ribosomal L27 protein Apre_0929 PF09269 Domain of unknown function (DUF1967) Apre_0929 PF01018 GTP1/OBG Apre_0929 PF01926 50S ribosome-binding GTPase Apre_0930 PF01985 CRS1 / YhbY (CRM) domain Apre_0931 PF01467 Cytidylyltransferase-like Apre_0932 PF01966 HD domain Apre_0934 PF10531 SLBB domain Apre_0935 PF02082 Transcriptional regulator Apre_0936 PF02272 DHHA1 domain Apre_0936 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Apre_0936 PF01411 tRNA synthetases class II (A) Apre_0937 PF06135 IreB regulatory phosphoprotein Apre_0938 PF03652 Holliday junction resolvase Apre_0940 PF01475 Ferric uptake regulator family Apre_0941 PF00753 Metallo-beta-lactamase superfamily Apre_0941 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Apre_0941 PF17770 Ribonuclease J C-terminal domain Apre_0945 PF01546 Peptidase family M20/M25/M40 Apre_0945 PF07687 Peptidase dimerisation domain Apre_0946 PF00692 dUTPase Apre_0948 PF05188 MutS domain II Apre_0948 PF01624 MutS domain I Apre_0948 PF05192 MutS domain III Apre_0948 PF05190 MutS family domain IV Apre_0948 PF00488 MutS domain V Apre_0949 PF01119 DNA mismatch repair protein, C-terminal domain Apre_0949 PF08676 MutL C terminal dimerisation domain Apre_0951 PF06838 Methionine gamma-lyase Apre_0952 PF02899 Phage integrase, N-terminal SAM-like domain Apre_0952 PF00589 Phage integrase family Apre_0953 PF01966 HD domain Apre_0953 PF00013 KH domain Apre_0953 PF12072 Domain of unknown function (DUF3552) Apre_0954 PF00132 Bacterial transferase hexapeptide (six repeats) Apre_0955 PF00291 Pyridoxal-phosphate dependent enzyme Apre_0956 PF00889 Elongation factor TS Apre_0957 PF00318 Ribosomal protein S2 Apre_0958 PF00448 SRP54-type protein, GTPase domain Apre_0958 PF02881 SRP54-type protein, helical bundle domain Apre_0959 PF17764 3′ DNA-binding domain (3′BD) Apre_0959 PF04851 Type III restriction enzyme, res subunit Apre_0959 PF00271 Helicase conserved C-terminal domain Apre_0959 PF18074 Primosomal protein N C-terminal domain Apre_0959 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Apre_0960 PF04127 DNA / pantothenate metabolism flavoprotein Apre_0960 PF02441 Flavoprotein Apre_0961 PF01192 RNA polymerase Rpb6 Apre_0962 PF00625 Guanylate kinase Apre_0964 PF00216 Bacterial DNA-binding protein Apre_0966 PF05698 Bacterial trigger factor protein (TF) C-terminus Apre_0967 PF17757 UvrB interaction domain Apre_0967 PF02559 CarD-like/TRCF domain Apre_0967 PF00271 Helicase conserved C-terminal domain Apre_0967 PF03461 TRCF domain Apre_0967 PF00270 DEAD/DEAH box helicase Apre_0968 PF01195 Peptidyl-tRNA hydrolase Apre_0969 PF14572 Phosphoribosyl synthetase-associated domain Apre_0969 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Apre_0971 PF01048 Phosphorylase superfamily Apre_0972 PF02502 Ribose/Galactose Isomerase Apre_0973 PF02875 Mur ligase family, glutamate ligase domain Apre_0973 PF01225 Mur ligase family, catalytic domain Apre_0973 PF08245 Mur ligase middle domain Apre_0974 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system Apre_0975 PF01168 Alanine racemase, N-terminal domain Apre_0975 PF00842 Alanine racemase, C-terminal domain Apre_0976 PF01256 Carbohydrate kinase Apre_0976 PF03853 YjeF-related protein N-terminus Apre_0977 PF01979 Amidohydrolase family Apre_0978 PF02637 GatB domain Apre_0978 PF02934 GatB/GatE catalytic domain Apre_0979 PF01425 Amidase Apre_0980 PF02686 Glu-tRNAGln amidotransferase C subunit Apre_0981 PF03120 NAD-dependent DNA ligase OB-fold domain Apre_0981 PF01653 NAD-dependent DNA ligase adenylation domain Apre_0981 PF00533 BRCA1 C Terminus (BRCT) domain Apre_0981 PF12826 Helix-hairpin-helix motif Apre_0982 PF13361 UvrD-like helicase C-terminal domain Apre_0982 PF00580 UvrD/REP helicase N-terminal domain Apre_0983 PF01371 Trp repressor protein Apre_0984 PF07685 CobB/CobQ-like glutamine amidotransferase domain Apre_0985 PF08245 Mur ligase middle domain Apre_0985 PF08353 Domain of unknown function (DUF1727) Apre_0986 PF00708 Acylphosphatase Apre_0987 PF00403 Heavy-metal-associated domain Apre_0988 PF02583 Metal-sensitive transcriptional repressor Apre_0989 PF03780 Asp23 family, cell envelope-related function Apre_0994 PF05958 tRNA (Uracil-5-)-methyltransferase Apre_0995 PF00929 Exonuclease Apre_0995 PF13307 Helicase C-terminal domain Apre_0996 PF00881 Nitroreductase family Apre_0999 PF04011 LemA family Apre_1001 PF13597 Anaerobic ribonucleoside-triphosphate reductase Apre_1001 PF03477 ATP cone domain Apre_1002 PF10431 C-terminal, D2-small domain, of ClpB protein Apre_1002 PF07724 AAA domain (Cdc48 subfamily) Apre_1002 PF17871 AAA lid domain Apre_1002 PF02861 Clp amino terminal domain, pathogenicity island component Apre_1002 PF00004 ATPase family associated with various cellular activities (AAA) Apre_1003 PF00226 DnaJ domain Apre_1003 PF01556 DnaJ C terminal domain Apre_1004 PF00156 Phosphoribosyl transferase domain Apre_1005 PF03816 Cell envelope-related transcriptional attenuator domain Apre_1006 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Apre_1006 PF01276 Orn/Lys/Arg decarboxylase, major domain Apre_1010 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Apre_1010 PF02874 ATP synthase alpha/beta family, beta-barrel domain Apre_1011 PF16886 ATPsynthase alpha/beta subunit N-term extension Apre_1011 PF02874 ATP synthase alpha/beta family, beta-barrel domain Apre_1011 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Apre_1014 PF00137 ATP synthase subunit C Apre_1015 PF01496 V-type ATPase 116kDa subunit family Apre_1018 PF00919 Uncharacterized protein family UPF0004 Apre_1018 PF01938 TRAM domain Apre_1018 PF04055 Radical SAM superfamily Apre_1019 PF02401 LytB protein Apre_1019 PF00575 S1 RNA binding domain Apre_1021 PF02224 Cytidylate kinase Apre_1023 PF01479 S4 domain Apre_1023 PF00849 RNA pseudouridylate synthase Apre_1025 PF02616 Segregation and condensation protein ScpA Apre_1026 PF00293 NUDIX domain Apre_1027 PF13476 AAA domain Apre_1028 PF01316 Arginine repressor, DNA binding domain Apre_1028 PF02863 Arginine repressor, C-terminal domain Apre_1029 PF00348 Polyprenyl synthetase Apre_1031 PF13742 OB-fold nucleic acid binding domain Apre_1031 PF02601 Exonuclease VII, large subunit Apre_1032 PF01029 NusB family Apre_1034 PF08207 Elongation factor P (EF-P) KOW-like domain Apre_1034 PF01132 Elongation factor P (EF-P) OB domain Apre_1034 PF09285 Elongation factor P, C-terminal Apre_1035 PF05636 HIGH Nucleotidyl Transferase Apre_1037 PF01467 Cytidylyltransferase-like Apre_1039 PF17191 RecG wedge domain Apre_1039 PF00270 DEAD/DEAH box helicase Apre_1039 PF00271 Helicase conserved C-terminal domain Apre_1040 PF13684 Dihydroxyacetone kinase family Apre_1040 PF02734 DAK2 domain Apre_1042 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Apre_1042 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Apre_1042 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Apre_1042 PF10371 Domain of unknown function Apre_1042 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Apre_1043 PF07475 HPr Serine kinase C-terminal domain Apre_1043 PF02603 HPr Serine kinase N terminus Apre_1044 PF12826 Helix-hairpin-helix motif Apre_1044 PF02151 UvrB/uvrC motif Apre_1044 PF01541 GIY-YIG catalytic domain Apre_1044 PF08459 UvrC Helix-hairpin-helix N-terminal Apre_1045 PF01321 Creatinase/Prolidase N-terminal domain Apre_1045 PF00557 Metallopeptidase family M24 Apre_1046 PF06071 Protein of unknown function (DUF933) Apre_1046 PF01926 50S ribosome-binding GTPase Apre_1047 PF00265 Thymidine kinase Apre_1048 PF00557 Metallopeptidase family M24 Apre_1050 PF13361 UvrD-like helicase C-terminal domain Apre_1050 PF00580 UvrD/REP helicase N-terminal domain Apre_1051 PF02875 Mur ligase family, glutamate ligase domain Apre_1051 PF08245 Mur ligase middle domain Apre_1052 PF01965 DJ-1/PfpI family Apre_1055 PF02390 Putative methyltransferase Apre_1056 PF02645 Uncharacterised protein, DegV family COG1307 Apre_1057 PF13185 GAF domain Apre_1058 PF03960 ArsC family Apre_1060 PF00465 Iron-containing alcohol dehydrogenase Apre_1061 PF02645 Uncharacterised protein, DegV family COG1307 Apre_1062 PF00291 Pyridoxal-phosphate dependent enzyme Apre_1062 PF13291 ACT domain Apre_1063 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Apre_1063 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Apre_1063 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Apre_1063 PF10371 Domain of unknown function Apre_1063 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Apre_1064 PF00375 Sodium:dicarboxylate symporter family Apre_1065 PF00056 lactate/malate dehydrogenase, NAD binding domain Apre_1065 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Apre_1066 PF03706 Lysylphosphatidylglycerol synthase TM region Apre_1066 PF09924 Uncharacterised conserved protein (DUF2156) Apre_1068 PF00571 CBS domain Apre_1068 PF00478 IMP dehydrogenase / GMP reductase domain Apre_1069 PF01546 Peptidase family M20/M25/M40 Apre_1069 PF07687 Peptidase dimerisation domain Apre_1070 PF13419 Haloacid dehalogenase-like hydrolase Apre_1071 PF02545 Maf-like protein Apre_1072 PF07722 Peptidase C26 Apre_1074 PF17925 Tetracyclin repressor-like, C-terminal domain Apre_1074 PF00440 Bacterial regulatory proteins, tetR family Apre_1077 PF01926 50S ribosome-binding GTPase Apre_1078 PF00892 EamA-like transporter family Apre_1080 PF02733 Dak1 domain Apre_1081 PF02734 DAK2 domain Apre_1082 PF03610 PTS system fructose IIA component Apre_1083 PF00270 DEAD/DEAH box helicase Apre_1083 PF00271 Helicase conserved C-terminal domain Apre_1085 PF02256 Iron hydrogenase small subunit Apre_1085 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Apre_1085 PF02906 Iron only hydrogenase large subunit, C-terminal domain Apre_1085 PF00037 4Fe-4S binding domain Apre_1086 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Apre_1086 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Apre_1086 PF00037 4Fe-4S binding domain Apre_1091 PF00005 ABC transporter Apre_1092 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Apre_1093 PF00072 Response regulator receiver domain Apre_1093 PF00486 Transcriptional regulatory protein, C terminal Apre_1096 PF00440 Bacterial regulatory proteins, tetR family Apre_1099 PF00378 Enoyl-CoA hydratase/isomerase Apre_1100 PF00285 Citrate synthase, C-terminal domain Apre_1101 PF00180 Isocitrate/isopropylmalate dehydrogenase Apre_1101 PF18324 Hypothetical protein TT1725 Apre_1102 PF00330 Aconitase family (aconitate hydratase) Apre_1103 PF01259 SAICAR synthetase Apre_1104 PF02769 AIR synthase related protein, C-terminal domain Apre_1104 PF00586 AIR synthase related protein, N-terminal domain Apre_1105 PF00731 AIR carboxylase Apre_1106 PF00571 CBS domain Apre_1106 PF00478 IMP dehydrogenase / GMP reductase domain Apre_1107 PF02844 Phosphoribosylglycinamide synthetase, N domain Apre_1107 PF02843 Phosphoribosylglycinamide synthetase, C domain Apre_1107 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Apre_1109 PF00551 Formyl transferase Apre_1110 PF00156 Phosphoribosyl transferase domain Apre_1111 PF01268 Formate--tetrahydrofolate ligase Apre_1112 PF07969 Amidohydrolase family Apre_1114 PF01964 Radical SAM ThiC family Apre_1115 PF01048 Phosphorylase superfamily Apre_1118 PF01751 Toprim domain Apre_1118 PF01131 DNA topoisomerase Apre_1118 PF01396 Topoisomerase DNA binding C4 zinc finger Apre_1121 PF11728 Putative aromatic acid exporter C-terminal domain Apre_1121 PF06081 Aromatic acid exporter family member 1 Apre_1125 PF04468 PSP1 C-terminal conserved region Apre_1127 PF06153 Cyclic-di-AMP receptor Apre_1128 PF02223 Thymidylate kinase Apre_1129 PF01386 Ribosomal L25p family Apre_1129 PF14693 Ribosomal protein TL5, C-terminal domain Apre_1130 PF08534 Redoxin Apre_1131 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Apre_1131 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Apre_1132 PF08239 Bacterial SH3 domain Apre_1132 PF01476 LysM domain Apre_1132 PF00877 NlpC/P60 family Apre_1133 PF01784 NIF3 (NGG1p interacting factor 3) Apre_1135 PF04542 Sigma-70 region 2 Apre_1135 PF00140 Sigma-70 factor, region 1.2 Apre_1135 PF04539 Sigma-70 region 3 Apre_1135 PF04545 Sigma-70, region 4 Apre_1135 PF03979 Sigma-70 factor, region 1.1 Apre_1136 PF10410 DnaB-helicase binding domain of primase Apre_1136 PF01807 CHC2 zinc finger Apre_1136 PF08275 DNA primase catalytic core, N-terminal domain Apre_1137 PF12833 Helix-turn-helix domain Apre_1137 PF02311 AraC-like ligand binding domain Apre_1140 PF03144 Elongation factor Tu domain 2 Apre_1140 PF00009 Elongation factor Tu GTP binding domain Apre_1140 PF03143 Elongation factor Tu C-terminal domain Apre_1141 PF03601 Conserved hypothetical protein 698 Apre_1142 PF04228 Putative neutral zinc metallopeptidase Apre_1143 PF01475 Ferric uptake regulator family Apre_1144 PF00542 Ribosomal protein L7/L12 C-terminal domain Apre_1144 PF16320 Ribosomal protein L7/L12 dimerisation domain Apre_1145 PF00466 Ribosomal protein L10 Apre_1146 PF00687 Ribosomal protein L1p/L10e family Apre_1147 PF00298 Ribosomal protein L11, RNA binding domain Apre_1147 PF03946 Ribosomal protein L11, N-terminal domain Apre_1148 PF02357 Transcription termination factor nusG Apre_1148 PF00467 KOW motif Apre_1150 PF00471 Ribosomal protein L33 Apre_1152 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Apre_1152 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Apre_1152 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Apre_1152 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Apre_1153 PF00171 Aldehyde dehydrogenase family Apre_1154 PF05175 Methyltransferase small domain Apre_1155 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Apre_1158 PF00885 6,7-dimethyl-8-ribityllumazine synthase Apre_1159 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Apre_1159 PF00925 GTP cyclohydrolase II Apre_1160 PF00677 Lumazine binding domain Apre_1161 PF01872 RibD C-terminal domain Apre_1161 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Apre_1163 PF01230 HIT domain Apre_1164 PF01938 TRAM domain Apre_1164 PF04055 Radical SAM superfamily Apre_1164 PF00919 Uncharacterized protein family UPF0004 Apre_1165 PF00684 DnaJ central domain Apre_1165 PF01556 DnaJ C terminal domain Apre_1165 PF00226 DnaJ domain Apre_1166 PF00012 Hsp70 protein Apre_1167 PF01025 GrpE Apre_1168 PF01628 HrcA protein C terminal domain Apre_1169 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Apre_1169 PF00378 Enoyl-CoA hydratase/isomerase Apre_1169 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Apre_1170 PF06969 HemN C-terminal domain Apre_1170 PF04055 Radical SAM superfamily Apre_1174 PF04542 Sigma-70 region 2 Apre_1174 PF08281 Sigma-70, region 4 Apre_1176 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Apre_1176 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Apre_1177 PF06969 HemN C-terminal domain Apre_1177 PF04055 Radical SAM superfamily Apre_1181 PF03167 Uracil DNA glycosylase superfamily Apre_1182 PF00679 Elongation factor G C-terminus Apre_1182 PF00009 Elongation factor Tu GTP binding domain Apre_1182 PF03144 Elongation factor Tu domain 2 Apre_1182 PF06421 GTP-binding protein LepA C-terminus Apre_1183 PF10502 Signal peptidase, peptidase S26 Apre_1184 PF01649 Ribosomal protein S20 Apre_1186 PF03772 Competence protein Apre_1186 PF00753 Metallo-beta-lactamase superfamily Apre_1186 PF13567 Domain of unknown function (DUF4131) Apre_1188 PF00005 ABC transporter Apre_1189 PF00005 ABC transporter Apre_1191 PF01381 Helix-turn-helix Apre_1197 PF13603 Leucyl-tRNA synthetase, Domain 2 Apre_1197 PF08264 Anticodon-binding domain of tRNA Apre_1197 PF09334 tRNA synthetases class I (M) Apre_1197 PF00133 tRNA synthetases class I (I, L, M and V) Apre_1198 PF00152 tRNA synthetases class II (D, K and N) Apre_1198 PF01336 OB-fold nucleic acid binding domain Apre_1199 PF16193 AAA C-terminal domain Apre_1199 PF05496 Holliday junction DNA helicase RuvB P-loop domain Apre_1199 PF12002 MgsA AAA+ ATPase C terminal Apre_1200 PF03477 ATP cone domain Apre_1201 PF12327 FtsZ family, C-terminal domain Apre_1201 PF00091 Tubulin/FtsZ family, GTPase domain Apre_1203 PF03033 Glycosyltransferase family 28 N-terminal domain Apre_1203 PF04101 Glycosyltransferase family 28 C-terminal domain Apre_1204 PF02875 Mur ligase family, glutamate ligase domain Apre_1204 PF08245 Mur ligase middle domain Apre_1205 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Apre_1205 PF00953 Glycosyl transferase family 4 Apre_1207 PF01795 MraW methylase family Apre_1208 PF02381 MraZ protein, putative antitoxin-like Apre_1210 PF01709 Transcriptional regulator Apre_1211 PF01205 Uncharacterized protein family UPF0029 Apre_1211 PF09186 Domain of unknown function (DUF1949) Apre_1212 PF16360 GTP-binding GTPase Middle Region Apre_1212 PF13167 GTP-binding GTPase N-terminal Apre_1212 PF01926 50S ribosome-binding GTPase Apre_1213 PF00905 Penicillin binding protein transpeptidase domain Apre_1213 PF00912 Transglycosylase Apre_1215 PF00486 Transcriptional regulatory protein, C terminal Apre_1215 PF00072 Response regulator receiver domain Apre_1216 PF00512 His Kinase A (phospho-acceptor) domain Apre_1216 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Apre_1216 PF00672 HAMP domain Apre_1220 PF00271 Helicase conserved C-terminal domain Apre_1220 PF08494 DEAD/H associated Apre_1220 PF00270 DEAD/DEAH box helicase Apre_1224 PF01047 MarR family Apre_1225 PF09587 Bacterial capsule synthesis protein PGA_cap Apre_1226 PF13416 Bacterial extracellular solute-binding protein Apre_1227 PF00528 Binding-protein-dependent transport system inner membrane component Apre_1228 PF00528 Binding-protein-dependent transport system inner membrane component Apre_1229 PF08402 TOBE domain Apre_1229 PF00005 ABC transporter Apre_1231 PF03313 Serine dehydratase alpha chain Apre_1232 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Apre_1232 PF00056 lactate/malate dehydrogenase, NAD binding domain Apre_1234 PF12146 Serine aminopeptidase, S33 Apre_1235 PF01470 Pyroglutamyl peptidase Apre_1239 PF00313 'Cold-shock' DNA-binding domain Apre_1241 PF08264 Anticodon-binding domain of tRNA Apre_1241 PF00133 tRNA synthetases class I (I, L, M and V) Apre_1241 PF10458 Valyl tRNA synthetase tRNA binding arm Apre_1243 PF02896 PEP-utilising enzyme, TIM barrel domain Apre_1243 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Apre_1243 PF00391 PEP-utilising enzyme, mobile domain Apre_1244 PF00171 Aldehyde dehydrogenase family Apre_1245 PF00209 Sodium:neurotransmitter symporter family Apre_1246 PF00209 Sodium:neurotransmitter symporter family Apre_1247 PF00579 tRNA synthetases class I (W and Y) Apre_1249 PF01043 SecA preprotein cross-linking domain Apre_1249 PF07516 SecA Wing and Scaffold domain Apre_1249 PF02810 SEC-C motif Apre_1249 PF07517 SecA DEAD-like domain Apre_1250 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus Apre_1250 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Apre_1251 PF07676 WD40-like Beta Propeller Repeat Apre_1251 PF00326 Prolyl oligopeptidase family Apre_1253 PF01812 5-formyltetrahydrofolate cyclo-ligase family Apre_1254 PF01717 Cobalamin-independent synthase, Catalytic domain Apre_1256 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Apre_1256 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Apre_1256 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Apre_1267 PF00534 Glycosyl transferases group 1 Apre_1267 PF13439 Glycosyltransferase Family 4 Apre_1268 PF01820 D-ala D-ala ligase N-terminus Apre_1268 PF07478 D-ala D-ala ligase C-terminus Apre_1269 PF02397 Bacterial sugar transferase Apre_1270 PF02222 ATP-grasp domain Apre_1271 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Apre_1272 PF02719 Polysaccharide biosynthesis protein Apre_1273 PF03023 Lipid II flippase MurJ Apre_1274 PF03023 Lipid II flippase MurJ Apre_1275 PF03816 Cell envelope-related transcriptional attenuator domain Apre_1276 PF08903 Domain of unknown function (DUF1846) Apre_1278 PF02424 ApbE family Apre_1280 PF00128 Alpha amylase, catalytic domain Apre_1280 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Apre_1280 PF02806 Alpha amylase, C-terminal all-beta domain Apre_1281 PF00485 Phosphoribulokinase / Uridine kinase family Apre_1282 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Apre_1282 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Apre_1284 PF14437 MafB19-like deaminase Apre_1285 PF00768 D-alanyl-D-alanine carboxypeptidase Apre_1285 PF07943 Penicillin-binding protein 5, C-terminal domain Apre_1288 PF01741 Large-conductance mechanosensitive channel, MscL Apre_1289 PF01396 Topoisomerase DNA binding C4 zinc finger Apre_1289 PF01751 Toprim domain Apre_1289 PF01131 DNA topoisomerase Apre_1290 PF17782 DprA winged helix domain Apre_1290 PF02481 DNA recombination-mediator protein A Apre_1292 PF01351 Ribonuclease HII Apre_1293 PF01926 50S ribosome-binding GTPase Apre_1297 PF00005 ABC transporter Apre_1299 PF01245 Ribosomal protein L19 Apre_1300 PF01746 tRNA (Guanine-1)-methyltransferase Apre_1301 PF01782 RimM N-terminal domain Apre_1301 PF05239 PRC-barrel domain Apre_1303 PF00886 Ribosomal protein S16 Apre_1304 PF02881 SRP54-type protein, helical bundle domain Apre_1304 PF00448 SRP54-type protein, GTPase domain Apre_1304 PF02978 Signal peptide binding domain Apre_1305 PF04297 Putative helix-turn-helix protein, YlxM / p13 like Apre_1306 PF13180 PDZ domain Apre_1309 PF00005 ABC transporter Apre_1312 PF01541 GIY-YIG catalytic domain Apre_1313 PF00575 S1 RNA binding domain Apre_1313 PF10150 Ribonuclease E/G family Apre_1315 PF00905 Penicillin binding protein transpeptidase domain Apre_1315 PF03717 Penicillin-binding Protein dimerisation domain Apre_1317 PF04085 rod shape-determining protein MreC Apre_1319 PF04002 RadC-like JAB domain Apre_1322 PF04060 Putative Fe-S cluster Apre_1322 PF13187 4Fe-4S dicluster domain Apre_1322 PF00037 4Fe-4S binding domain Apre_1323 PF02508 Rnf-Nqr subunit, membrane protein Apre_1324 PF02508 Rnf-Nqr subunit, membrane protein Apre_1326 PF03116 NQR2, RnfD, RnfE family Apre_1327 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Apre_1327 PF10531 SLBB domain Apre_1327 PF13237 4Fe-4S dicluster domain Apre_1327 PF13375 RnfC Barrel sandwich hybrid domain Apre_1329 PF01121 Dephospho-CoA kinase Apre_1330 PF00476 DNA polymerase family A Apre_1330 PF01367 5'-3' exonuclease, C-terminal SAM fold Apre_1330 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Apre_1335 PF05746 DALR anticodon binding domain Apre_1335 PF03485 Arginyl tRNA synthetase N terminal domain Apre_1335 PF00750 tRNA synthetases class I (R) Apre_1336 PF01713 Smr domain Apre_1336 PF00488 MutS domain V Apre_1337 PF12392 Collagenase Apre_1337 PF01136 Peptidase family U32 Apre_1339 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Apre_1339 PF03484 tRNA synthetase B5 domain Apre_1339 PF03147 Ferredoxin-fold anticodon binding domain Apre_1339 PF03483 B3/4 domain Apre_1339 PF01588 Putative tRNA binding domain Apre_1340 PF01409 tRNA synthetases class II core domain (F) Apre_1340 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Apre_1341 PF00588 SpoU rRNA Methylase family Apre_1341 PF08032 RNA 2'-O ribose methyltransferase substrate binding Apre_1342 PF00453 Ribosomal protein L20 Apre_1343 PF01632 Ribosomal protein L35 Apre_1344 PF00707 Translation initiation factor IF-3, C-terminal domain Apre_1344 PF05198 Translation initiation factor IF-3, N-terminal domain Apre_1346 PF02645 Uncharacterised protein, DegV family COG1307 Apre_1348 PF04073 Aminoacyl-tRNA editing domain Apre_1350 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain Apre_1350 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain Apre_1352 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Apre_1352 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Apre_1353 PF00378 Enoyl-CoA hydratase/isomerase Apre_1354 PF01012 Electron transfer flavoprotein domain Apre_1354 PF00766 Electron transfer flavoprotein FAD-binding domain Apre_1355 PF01012 Electron transfer flavoprotein domain Apre_1356 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Apre_1356 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Apre_1356 PF02770 Acyl-CoA dehydrogenase, middle domain Apre_1357 PF01565 FAD binding domain Apre_1357 PF02913 FAD linked oxidases, C-terminal domain Apre_1358 PF03788 LrgA family Apre_1359 PF04172 LrgB-like family Apre_1361 PF13411 MerR HTH family regulatory protein Apre_1361 PF06445 GyrI-like small molecule binding domain Apre_1362 PF01880 Desulfoferrodoxin Apre_1363 PF13393 Histidyl-tRNA synthetase Apre_1363 PF03129 Anticodon binding domain Apre_1365 PF00005 ABC transporter Apre_1365 PF00664 ABC transporter transmembrane region Apre_1366 PF00005 ABC transporter Apre_1366 PF00664 ABC transporter transmembrane region Apre_1370 PF03023 Lipid II flippase MurJ Apre_1373 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Apre_1373 PF00512 His Kinase A (phospho-acceptor) domain Apre_1374 PF00072 Response regulator receiver domain Apre_1374 PF00486 Transcriptional regulatory protein, C terminal Apre_1375 PF01895 PhoU domain Apre_1376 PF00005 ABC transporter Apre_1377 PF00528 Binding-protein-dependent transport system inner membrane component Apre_1378 PF00528 Binding-protein-dependent transport system inner membrane component Apre_1379 PF12849 PBP superfamily domain Apre_1380 PF00294 pfkB family carbohydrate kinase Apre_1381 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Apre_1382 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component Apre_1383 PF03480 Bacterial extracellular solute-binding protein, family 7 Apre_1384 PF00356 Bacterial regulatory proteins, lacI family Apre_1391 PF00210 Ferritin-like domain Apre_1393 PF02677 Epoxyqueuosine reductase QueH Apre_1394 PF00380 Ribosomal protein S9/S16 Apre_1395 PF00572 Ribosomal protein L13 Apre_1397 PF08543 Phosphomethylpyrimidine kinase Apre_1397 PF02581 Thiamine monophosphate synthase Apre_1398 PF02386 Cation transport protein Apre_1399 PF02080 TrkA-C domain Apre_1399 PF02254 TrkA-N domain Apre_1403 PF16199 Radical_SAM C-terminal domain Apre_1403 PF04055 Radical SAM superfamily Apre_1404 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Apre_1404 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Apre_1406 PF17760 UvrA interaction domain Apre_1406 PF00005 ABC transporter Apre_1406 PF17755 UvrA DNA-binding domain Apre_1407 PF00271 Helicase conserved C-terminal domain Apre_1407 PF02151 UvrB/uvrC motif Apre_1407 PF12344 Ultra-violet resistance protein B Apre_1407 PF17757 UvrB interaction domain Apre_1407 PF04851 Type III restriction enzyme, res subunit Apre_1408 PF01022 Bacterial regulatory protein, arsR family Apre_1410 PF00403 Heavy-metal-associated domain Apre_1412 PF05525 Branched-chain amino acid transport protein Apre_1413 PF00270 DEAD/DEAH box helicase Apre_1413 PF09382 RQC domain Apre_1413 PF00271 Helicase conserved C-terminal domain Apre_1413 PF00570 HRDC domain Apre_1413 PF16124 RecQ zinc-binding Apre_1416 PF01416 tRNA pseudouridine synthase Apre_1417 PF02361 Cobalt transport protein Apre_1418 PF00005 ABC transporter Apre_1419 PF00005 ABC transporter Apre_1421 PF02926 THUMP domain Apre_1421 PF01170 Putative RNA methylase family UPF0020 Apre_1422 PF01799 [2Fe-2S] binding domain Apre_1422 PF00111 2Fe-2S iron-sulfur cluster binding domain Apre_1423 PF03450 CO dehydrogenase flavoprotein C-terminal domain Apre_1423 PF00941 FAD binding domain in molybdopterin dehydrogenase Apre_1424 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Apre_1424 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Apre_1425 PF00860 Permease family Apre_1426 PF00860 Permease family Apre_1427 PF01979 Amidohydrolase family Apre_1428 PF07992 Pyridine nucleotide-disulphide oxidoreductase Apre_1428 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Apre_1429 PF00696 Amino acid kinase family Apre_1430 PF01979 Amidohydrolase family Apre_1431 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin Apre_1432 PF01546 Peptidase family M20/M25/M40 Apre_1432 PF07687 Peptidase dimerisation domain Apre_1433 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Apre_1433 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Apre_1434 PF00291 Pyridoxal-phosphate dependent enzyme Apre_1435 PF00392 Bacterial regulatory proteins, gntR family Apre_1435 PF07729 FCD domain Apre_1436 PF00994 Probable molybdopterin binding domain Apre_1439 PF01967 MoaC family Apre_1440 PF06463 Molybdenum Cofactor Synthesis C Apre_1440 PF04055 Radical SAM superfamily Apre_1441 PF00005 ABC transporter Apre_1441 PF08402 TOBE domain Apre_1442 PF00528 Binding-protein-dependent transport system inner membrane component Apre_1444 PF03590 Aspartate-ammonia ligase Apre_1454 PF04650 YSIRK type signal peptide Apre_1454 PF10425 C-terminus of bacterial fibrinogen-binding adhesin Apre_1454 PF17210 SdrD B-like domain Apre_1454 PF00746 LPXTG cell wall anchor motif Apre_1454 PF17961 Bacterial Ig domain Apre_1456 PF00258 Flavodoxin Apre_1458 PF17910 FeoB cytosolic helical domain Apre_1458 PF02421 Ferrous iron transport protein B Apre_1458 PF07670 Nucleoside recognition Apre_1458 PF07664 Ferrous iron transport protein B C terminus Apre_1464 PF03780 Asp23 family, cell envelope-related function Apre_1467 PF16326 ABC transporter C-terminal domain Apre_1467 PF12848 ABC transporter Apre_1467 PF00005 ABC transporter Apre_1468 PF02629 CoA binding domain Apre_1468 PF06971 Putative DNA-binding protein N-terminus Apre_1472 PF00301 Rubredoxin Apre_1473 PF00301 Rubredoxin Apre_1475 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Apre_1475 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Apre_1478 PF02146 Sir2 family Apre_1480 PF00005 ABC transporter Apre_1489 PF07992 Pyridine nucleotide-disulphide oxidoreductase Apre_1489 PF04324 BFD-like [2Fe-2S] binding domain Apre_1490 PF01266 FAD dependent oxidoreductase Apre_1491 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Apre_1491 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Apre_1492 PF04309 Glycerol-3-phosphate responsive antiterminator Apre_1493 PF02397 Bacterial sugar transferase Apre_1494 PF01479 S4 domain Apre_1494 PF00849 RNA pseudouridylate synthase Apre_1495 PF03551 Transcriptional regulator PadR-like family Apre_1496 PF00580 UvrD/REP helicase N-terminal domain Apre_1496 PF13361 UvrD-like helicase C-terminal domain Apre_1498 PF18267 Rubredoxin NAD+ reductase C-terminal domain Apre_1498 PF07992 Pyridine nucleotide-disulphide oxidoreductase Apre_1498 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Apre_1498 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Apre_1498 PF04324 BFD-like [2Fe-2S] binding domain Apre_1500 PF00118 TCP-1/cpn60 chaperonin family Apre_1501 PF00166 Chaperonin 10 Kd subunit Apre_1503 PF01641 SelR domain Apre_1506 PF08245 Mur ligase middle domain Apre_1506 PF02875 Mur ligase family, glutamate ligase domain Apre_1506 PF01225 Mur ligase family, catalytic domain Apre_1508 PF00462 Glutaredoxin Apre_1509 PF00398 Ribosomal RNA adenine dimethylase Apre_1510 PF13662 Toprim domain Apre_1510 PF13331 Domain of unknown function (DUF4093) Apre_1511 PF01026 TatD related DNase Apre_1512 PF01588 Putative tRNA binding domain Apre_1512 PF08264 Anticodon-binding domain of tRNA Apre_1512 PF09334 tRNA synthetases class I (M) Apre_1513 PF01235 Sodium:alanine symporter family Apre_1514 PF00579 tRNA synthetases class I (W and Y) Apre_1514 PF01479 S4 domain Apre_1515 PF14602 Hexapeptide repeat of succinyl-transferase Apre_1515 PF12464 Maltose acetyltransferase Apre_1515 PF00132 Bacterial transferase hexapeptide (six repeats) Apre_1516 PF01022 Bacterial regulatory protein, arsR family Apre_1517 PF00005 ABC transporter Apre_1518 PF00005 ABC transporter Apre_1518 PF00664 ABC transporter transmembrane region Apre_1519 PF00072 Response regulator receiver domain Apre_1519 PF00196 Bacterial regulatory proteins, luxR family Apre_1523 PF00005 ABC transporter Apre_1525 PF10609 NUBPL iron-transfer P-loop NTPase Apre_1531 PF02829 3H domain Apre_1531 PF08279 HTH domain Apre_1532 PF00528 Binding-protein-dependent transport system inner membrane component Apre_1533 PF00005 ABC transporter Apre_1536 PF00075 RNase H Apre_1537 PF09154 Domain of unknown function (DUF1939) Apre_1537 PF00128 Alpha amylase, catalytic domain Apre_1538 PF01791 DeoC/LacD family aldolase Apre_1540 PF00367 phosphotransferase system, EIIB Apre_1540 PF02378 Phosphotransferase system, EIIC Apre_1541 PF13580 SIS domain Apre_1543 PF00144 Beta-lactamase Apre_1544 PF01418 Helix-turn-helix domain, rpiR family Apre_1544 PF01380 SIS domain Apre_1545 PF13419 Haloacid dehalogenase-like hydrolase Apre_1546 PF01196 Ribosomal protein L17 Apre_1547 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Apre_1547 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Apre_1547 PF01000 RNA polymerase Rpb3/RpoA insert domain Apre_1548 PF00163 Ribosomal protein S4/S9 N-terminal domain Apre_1548 PF01479 S4 domain Apre_1549 PF00411 Ribosomal protein S11 Apre_1550 PF00416 Ribosomal protein S13/S18 Apre_1551 PF00444 Ribosomal protein L36 Apre_1553 PF05191 Adenylate kinase, active site lid Apre_1554 PF00344 SecY translocase Apre_1555 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Apre_1556 PF00327 Ribosomal protein L30p/L7e Apre_1557 PF00333 Ribosomal protein S5, N-terminal domain Apre_1557 PF03719 Ribosomal protein S5, C-terminal domain Apre_1558 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Apre_1560 PF00410 Ribosomal protein S8 Apre_1561 PF00253 Ribosomal protein S14p/S29e Apre_1562 PF00281 Ribosomal protein L5 Apre_1562 PF00673 ribosomal L5P family C-terminus Apre_1563 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 Apre_1563 PF00467 KOW motif Apre_1564 PF00238 Ribosomal protein L14p/L23e Apre_1565 PF00366 Ribosomal protein S17 Apre_1566 PF00831 Ribosomal L29 protein Apre_1567 PF00252 Ribosomal protein L16p/L10e Apre_1568 PF07650 KH domain Apre_1568 PF00189 Ribosomal protein S3, C-terminal domain Apre_1569 PF00237 Ribosomal protein L22p/L17e Apre_1570 PF00203 Ribosomal protein S19 Apre_1571 PF03947 Ribosomal Proteins L2, C-terminal domain Apre_1571 PF00181 Ribosomal Proteins L2, RNA binding domain Apre_1572 PF00276 Ribosomal protein L23 Apre_1573 PF00573 Ribosomal protein L4/L1 family Apre_1574 PF00297 Ribosomal protein L3 Apre_1575 PF00338 Ribosomal protein S10p/S20e Apre_1576 PF03976 Polyphosphate kinase 2 (PPK2) Apre_1578 PF03553 Na+/H+ antiporter family Apre_1583 PF02378 Phosphotransferase system, EIIC Apre_1584 PF00232 Glycosyl hydrolase family 1 Apre_1585 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Apre_1586 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit Apre_1587 PF08280 M protein trans-acting positive regulator (MGA) HTH domain Apre_1587 PF05043 Mga helix-turn-helix domain Apre_1587 PF00874 PRD domain Apre_1588 PF00365 Phosphofructokinase Apre_1589 PF05525 Branched-chain amino acid transport protein Apre_1590 PF03812 2-keto-3-deoxygluconate permease Apre_1591 PF00933 Glycosyl hydrolase family 3 N terminal domain Apre_1594 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Apre_1594 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Apre_1596 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Apre_1596 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Apre_1597 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Apre_1597 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Apre_1598 PF00294 pfkB family carbohydrate kinase Apre_1599 PF01081 KDPG and KHG aldolase Apre_1600 PF02614 Glucuronate isomerase Apre_1601 PF03786 D-mannonate dehydratase (UxuA) Apre_1602 PF08125 Mannitol dehydrogenase C-terminal domain Apre_1602 PF01232 Mannitol dehydrogenase Rossmann domain Apre_1605 PF09861 Lactate racemase N-terminal domain Apre_1606 PF02417 Chromate transporter Apre_1607 PF02417 Chromate transporter Apre_1608 PF00703 Glycosyl hydrolases family 2 Apre_1608 PF02836 Glycosyl hydrolases family 2, TIM barrel domain Apre_1608 PF02837 Glycosyl hydrolases family 2, sugar binding domain Apre_1608 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 Apre_1608 PF16355 Domain of unknown function (DUF4982) Apre_1611 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Apre_1612 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component Apre_1613 PF03480 Bacterial extracellular solute-binding protein, family 7 Apre_1614 PF00107 Zinc-binding dehydrogenase Apre_1614 PF08240 Alcohol dehydrogenase GroES-like domain Apre_1616 PF02779 Transketolase, pyrimidine binding domain Apre_1616 PF02780 Transketolase, C-terminal domain Apre_1616 PF00456 Transketolase, thiamine diphosphate binding domain Apre_1617 PF00923 Transaldolase/Fructose-6-phosphate aldolase Apre_1618 PF13407 Periplasmic binding protein domain Apre_1619 PF02653 Branched-chain amino acid transport system / permease component Apre_1620 PF00005 ABC transporter Apre_1621 PF05025 RbsD / FucU transport protein family Apre_1623 PF00356 Bacterial regulatory proteins, lacI family Apre_1624 PF00155 Aminotransferase class I and II Apre_1625 PF01869 BadF/BadG/BcrA/BcrD ATPase family Apre_1626 PF00186 Dihydrofolate reductase Apre_1628 PF02581 Thiamine monophosphate synthase Apre_1629 PF02110 Hydroxyethylthiazole kinase family Apre_1632 PF05690 Thiazole biosynthesis protein ThiG Apre_1633 PF00899 ThiF family Apre_1636 PF01592 NifU-like N terminal domain Apre_1637 PF00266 Aminotransferase class-V Apre_1638 PF01458 Uncharacterized protein family (UPF0051) Apre_1639 PF01458 Uncharacterized protein family (UPF0051) Apre_1640 PF00005 ABC transporter Apre_1641 PF00381 PTS HPr component phosphorylation site Apre_1642 PF00140 Sigma-70 factor, region 1.2 Apre_1642 PF04542 Sigma-70 region 2 Apre_1642 PF04539 Sigma-70 region 3 Apre_1642 PF04545 Sigma-70, region 4 Apre_1643 PF05991 YacP-like NYN domain Apre_1644 PF08032 RNA 2'-O ribose methyltransferase substrate binding Apre_1644 PF00588 SpoU rRNA Methylase family Apre_1645 PF09190 DALR domain Apre_1645 PF01406 tRNA synthetases class I (C) catalytic domain Apre_1646 PF00749 tRNA synthetases class I (E and Q), catalytic domain Apre_1648 PF01432 Peptidase family M3 Apre_1648 PF08439 Oligopeptidase F Apre_1649 PF02073 Thermophilic metalloprotease (M29) Apre_1655 PF01381 Helix-turn-helix Apre_1656 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Apre_1657 PF02915 Rubrerythrin Apre_1658 PF00342 Phosphoglucose isomerase Apre_1662 PF01554 MatE Apre_1664 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Apre_1664 PF02824 TGS domain Apre_1664 PF03129 Anticodon binding domain Apre_1664 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Apre_1665 PF03610 PTS system fructose IIA component Apre_1665 PF03830 PTS system sorbose subfamily IIB component Apre_1667 PF00528 Binding-protein-dependent transport system inner membrane component Apre_1669 PF17385 Lacto-N-biose phosphorylase central domain Apre_1669 PF17386 Lacto-N-biose phosphorylase C-terminal domain Apre_1669 PF09508 Lacto-N-biose phosphorylase N-terminal TIM barrel domain Apre_1671 PF17912 MalK OB fold domain Apre_1671 PF00005 ABC transporter Apre_1671 PF03459 TOBE domain Apre_1672 PF16363 GDP-mannose 4,6 dehydratase Apre_1674 PF12905 Endo-alpha-N-acetylgalactosaminidase Apre_1674 PF17995 Endo-alpha-N-acetylgalactosaminidase N-terminal Apre_1674 PF18080 Galactose mutarotase-like fold domain Apre_1674 PF04650 YSIRK type signal peptide Apre_1674 PF00754 F5/8 type C domain Apre_1674 PF17974 Galactose-binding domain-like Apre_1674 PF17451 Glycosyl hydrolase 101 beta sandwich domain Apre_1675 PF03830 PTS system sorbose subfamily IIB component Apre_1676 PF07992 Pyridine nucleotide-disulphide oxidoreductase Apre_1676 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Apre_1677 PF03358 NADPH-dependent FMN reductase Apre_1678 PF02678 Pirin Apre_1678 PF05726 Pirin C-terminal cupin domain Apre_1679 PF01047 MarR family Apre_1681 PF03169 OPT oligopeptide transporter protein Apre_1682 PF00571 CBS domain Apre_1682 PF01595 Cyclin M transmembrane N-terminal domain Apre_1682 PF03471 Transporter associated domain Apre_1683 PF03553 Na+/H+ antiporter family Apre_1684 PF01813 ATP synthase subunit D Apre_1685 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Apre_1685 PF02874 ATP synthase alpha/beta family, beta-barrel domain Apre_1686 PF16886 ATPsynthase alpha/beta subunit N-term extension Apre_1686 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Apre_1686 PF02874 ATP synthase alpha/beta family, beta-barrel domain Apre_1687 PF01990 ATP synthase (F/14-kDa) subunit Apre_1690 PF00137 ATP synthase subunit C Apre_1691 PF01496 V-type ATPase 116kDa subunit family Apre_1694 PF00534 Glycosyl transferases group 1 Apre_1694 PF13439 Glycosyltransferase Family 4 Apre_1695 PF01235 Sodium:alanine symporter family Apre_1696 PF00268 Ribonucleotide reductase, small chain Apre_1697 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV Apre_1700 PF02867 Ribonucleotide reductase, barrel domain Apre_1700 PF00317 Ribonucleotide reductase, all-alpha domain Apre_1700 PF03477 ATP cone domain Apre_1701 PF06271 RDD family Apre_1702 PF01343 Peptidase family S49 Apre_1704 PF02540 NAD synthase Apre_1705 PF00731 AIR carboxylase Apre_1706 PF01969 Protein of unknown function DUF111 Apre_1707 PF01969 Protein of unknown function DUF111 Apre_1709 PF01032 FecCD transport family Apre_1710 PF00005 ABC transporter Apre_1717 PF01434 Peptidase family M41 Apre_1717 PF06480 FtsH Extracellular Apre_1717 PF17862 AAA+ lid domain Apre_1717 PF00004 ATPase family associated with various cellular activities (AAA) Apre_1718 PF01047 MarR family Apre_1720 PF07992 Pyridine nucleotide-disulphide oxidoreductase Apre_1721 PF00085 Thioredoxin Apre_1724 PF01515 Phosphate acetyl/butaryl transferase Apre_1727 PF02195 ParB-like nuclease domain Apre_1727 PF17762 HTH domain found in ParB protein Apre_1728 PF13614 AAA domain Apre_1729 PF02464 Competence-damaged protein Apre_1729 PF18146 Damage-inducible protein CinA KH domain Apre_1729 PF00994 Probable molybdopterin binding domain Apre_1731 PF02527 rRNA small subunit methyltransferase G Apre_1732 PF01134 Glucose inhibited division protein A Apre_1732 PF13932 GidA associated domain Apre_1733 PF10396 GTP-binding protein TrmE N-terminus Apre_1733 PF01926 50S ribosome-binding GTPase Apre_1733 PF12631 MnmE helical domain Apre_1734 PF02690 Na+/Pi-cotransporter Apre_1735 PF01424 R3H domain Apre_1735 PF14804 Jag N-terminus Apre_1736 PF02096 60Kd inner membrane protein Apre_1737 PF01809 Putative membrane protein insertion efficiency factor Apre_1738 PF00825 Ribonuclease P Apre_1739 PF00468 Ribosomal protein L34 Apre_1743 PF00005 ABC transporter Apre_1743 PF00664 ABC transporter transmembrane region Apre_1744 PF00069 Protein kinase domain Apre_1745 PF00005 ABC transporter Apre_1755 PF00005 ABC transporter Apre_1757 PF00005 ABC transporter Apre_1757 PF03412 Peptidase C39 family Apre_1757 PF00664 ABC transporter transmembrane region Apre_1758 PF03432 Relaxase/Mobilisation nuclease domain Apre_1761 PF00975 Thioesterase domain Apre_1763 PF00501 AMP-binding enzyme Apre_1763 PF13193 AMP-binding enzyme C-terminal domain Apre_1764 PF00550 Phosphopantetheine attachment site Apre_1764 PF00501 AMP-binding enzyme Apre_1764 PF08242 Methyltransferase domain Apre_1764 PF00668 Condensation domain Apre_1765 PF00975 Thioesterase domain Apre_1765 PF00550 Phosphopantetheine attachment site Apre_1765 PF08242 Methyltransferase domain Apre_1765 PF14765 Polyketide synthase dehydratase Apre_1765 PF00109 Beta-ketoacyl synthase, N-terminal domain Apre_1765 PF16197 Ketoacyl-synthetase C-terminal extension Apre_1765 PF02801 Beta-ketoacyl synthase, C-terminal domain Apre_1766 PF00501 AMP-binding enzyme Apre_1766 PF13193 AMP-binding enzyme C-terminal domain Apre_1766 PF00668 Condensation domain Apre_1766 PF00550 Phosphopantetheine attachment site Apre_1767 PF00528 Binding-protein-dependent transport system inner membrane component Apre_1768 PF00528 Binding-protein-dependent transport system inner membrane component Apre_1768 PF12911 N-terminal TM domain of oligopeptide transport permease C Apre_1769 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Apre_1769 PF00005 ABC transporter Apre_1770 PF00005 ABC transporter Apre_1770 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Apre_1771 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Apre_1773 PF00664 ABC transporter transmembrane region Apre_1773 PF00005 ABC transporter Apre_1774 PF00005 ABC transporter Apre_1774 PF00664 ABC transporter transmembrane region Apre_1776 PF02796 Helix-turn-helix domain of resolvase Apre_1776 PF00239 Resolvase, N terminal domain Apre_1777 PF05958 tRNA (Uracil-5-)-methyltransferase Apre_1781 PF05958 tRNA (Uracil-5-)-methyltransferase Apre_1783 PF08241 Methyltransferase domain Apre_1788 PF01443 Viral (Superfamily 1) RNA helicase Apre_1788 PF17841 BID domain of Bartonella effector protein (Bep) Apre_1788 PF03389 MobA/MobL family Apre_1790 PF12833 Helix-turn-helix domain Apre_1790 PF06445 GyrI-like small molecule binding domain Apre_1795 PF02796 Helix-turn-helix domain of resolvase Apre_1795 PF00239 Resolvase, N terminal domain Apre_1798 PF12833 Helix-turn-helix domain Apre_1798 PF06445 GyrI-like small molecule binding domain Apre_1801 PF06970 Replication initiator protein A (RepA) N-terminus Apre_1801 PF18008 Replication initiator protein A C-terminal domain Apre_1802 PF01695 IstB-like ATP binding protein Apre_1822 PF01751 Toprim domain Apre_1822 PF01131 DNA topoisomerase Apre_1823 PF00145 C-5 cytosine-specific DNA methylase Apre_1825 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Apre_1830 PF13443 Cro/C1-type HTH DNA-binding domain Apre_1833 PF00072 Response regulator receiver domain Apre_1833 PF00486 Transcriptional regulatory protein, C terminal Apre_1834 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Apre_1834 PF00512 His Kinase A (phospho-acceptor) domain Apre_1835 PF00005 ABC transporter Apre_1837 PF06463 Molybdenum Cofactor Synthesis C Apre_1837 PF04055 Radical SAM superfamily Apre_1840 PF00005 ABC transporter Apre_1841 PF04892 VanZ like family Apre_1845 PF00005 ABC transporter Apre_1849 PF00196 Bacterial regulatory proteins, luxR family Apre_1849 PF00072 Response regulator receiver domain Apre_1852 PF00072 Response regulator receiver domain Apre_1852 PF00196 Bacterial regulatory proteins, luxR family