Apre_0001 SM00382 ATPases associated with a variety of cellular activities Apre_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain Apre_0002 SM00480 DNA polymerase III beta subunit Apre_0005 SM00387 Histidine kinase-like ATPases Apre_0005 SM00433 TopoisomeraseII Apre_0006 SM00434 DNA Topoisomerase IV Apre_0018 SM00382 ATPases associated with a variety of cellular activities Apre_0019 SM00382 ATPases associated with a variety of cellular activities Apre_0027 SM00342 helix_turn_helix, arabinose operon control protein Apre_0030 SM00382 ATPases associated with a variety of cellular activities Apre_0030 SM01086 C-terminal, D2-small domain, of ClpB protein Apre_0035 SM00420 helix_turn_helix, Deoxyribose operon repressor Apre_0035 SM01134 Apre_0035 Apre_0036 SM01133 Apre_0036 Apre_0039 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain Apre_0044 SM00382 ATPases associated with a variety of cellular activities Apre_0045 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Apre_0053 SM00382 ATPases associated with a variety of cellular activities Apre_0064 SM00382 ATPases associated with a variety of cellular activities Apre_0066 SM00729 Elongator protein 3, MiaB family, Radical SAM Apre_0073 SM00420 helix_turn_helix, Deoxyribose operon repressor Apre_0073 SM01134 Apre_0073 Apre_0076 SM00345 helix_turn_helix gluconate operon transcriptional repressor Apre_0076 SM00866 Apre_0076 Apre_0079 SM01133 Apre_0079 Apre_0082 SM00849 Metallo-beta-lactamase superfamily Apre_0086 SM00448 cheY-homologous receiver domain Apre_0086 SM00862 Transcriptional regulatory protein, C terminal Apre_0087 SM00387 Histidine kinase-like ATPases Apre_0087 SM00388 His Kinase A (phosphoacceptor) domain Apre_0108 SM00831 Cation transporter/ATPase, N-terminus Apre_0111 SM00354 helix_turn _helix lactose operon repressor Apre_0127 SM00382 ATPases associated with a variety of cellular activities Apre_0127 SM01086 C-terminal, D2-small domain, of ClpB protein Apre_0133 SM00382 ATPases associated with a variety of cellular activities Apre_0136 SM00382 ATPases associated with a variety of cellular activities Apre_0137 SM00900 Apre_0137 Apre_0138 SM00900 Apre_0138 Apre_0142 SM00382 ATPases associated with a variety of cellular activities Apre_0149 SM00872 Alpha mannosidase, middle domain Apre_0150 SM01149 Apre_0150 Apre_0168 SM00382 ATPases associated with a variety of cellular activities Apre_0169 SM00345 helix_turn_helix gluconate operon transcriptional repressor Apre_0170 SM00382 ATPases associated with a variety of cellular activities Apre_0172 SM00046 Diacylglycerol kinase catalytic domain (presumed) Apre_0173 SM01058 CarD-like/TRCF domain Apre_0174 SM00670 Large family of predicted nucleotide-binding domains Apre_0179 SM00855 Phosphoglycerate mutase family Apre_0180 SM00862 Transcriptional regulatory protein, C terminal Apre_0187 SM00245 tail specific protease Apre_0188 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Apre_0191 SM00345 helix_turn_helix gluconate operon transcriptional repressor Apre_0192 SM00382 ATPases associated with a variety of cellular activities Apre_0197 SM01264 Apre_0197 Apre_0204 SM00838 Elongation factor G C-terminus Apre_0204 SM00889 Elongation factor G, domain IV Apre_0205 SM00642 Alpha-amylase domain Apre_0211 SM00244 prohibitin homologues Apre_0214 SM00530 Helix-turn-helix XRE-family like proteins Apre_0215 SM00382 ATPases associated with a variety of cellular activities Apre_0223 SM00530 Helix-turn-helix XRE-family like proteins Apre_0225 SM00345 helix_turn_helix gluconate operon transcriptional repressor Apre_0227 SM00382 ATPases associated with a variety of cellular activities Apre_0229 SM00919 Malic enzyme, NAD binding domain Apre_0229 SM01274 Apre_0229 Apre_0232 SM00849 Metallo-beta-lactamase superfamily Apre_0236 SM00342 helix_turn_helix, arabinose operon control protein Apre_0241 SM00642 Alpha-amylase domain Apre_0242 SM00382 ATPases associated with a variety of cellular activities Apre_0243 SM00642 Alpha-amylase domain Apre_0249 SM00287 Bacterial SH3 domain homologues Apre_0252 SM00382 ATPases associated with a variety of cellular activities Apre_0266 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Apre_0266 SM00245 tail specific protease Apre_0267 SM00116 Domain in cystathionine beta-synthase and other proteins. Apre_0267 SM00924 MgtE intracellular N domain Apre_0271 SM00729 Elongator protein 3, MiaB family, Radical SAM Apre_0271 SM00876 Biotin and Thiamin Synthesis associated domain Apre_0273 SM00876 Biotin and Thiamin Synthesis associated domain Apre_0274 SM00382 ATPases associated with a variety of cellular activities Apre_0274 SM00930 Apre_0274 Apre_0287 SM00382 ATPases associated with a variety of cellular activities Apre_0296 SM00382 ATPases associated with a variety of cellular activities Apre_0315 SM00729 Elongator protein 3, MiaB family, Radical SAM Apre_0340 SM00530 Helix-turn-helix XRE-family like proteins Apre_0343 SM01252 Apre_0343 Apre_0347 SM00487 DEAD-like helicases superfamily Apre_0349 SM00382 ATPases associated with a variety of cellular activities Apre_0351 SM00382 ATPases associated with a variety of cellular activities Apre_0352 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Apre_0355 SM00226 Low molecular weight phosphatase family Apre_0358 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Apre_0375 SM00382 ATPases associated with a variety of cellular activities Apre_0375 SM00994 ClpX C4-type zinc finger Apre_0375 SM01086 C-terminal, D2-small domain, of ClpB protein Apre_0376 SM00382 ATPases associated with a variety of cellular activities Apre_0376 SM00464 Found in ATP-dependent protease La (LON) Apre_0378 SM00900 Apre_0378 Apre_0381 SM00420 helix_turn_helix, Deoxyribose operon repressor Apre_0381 SM01134 Apre_0381 Apre_0390 SM00382 ATPases associated with a variety of cellular activities Apre_0391 SM00382 ATPases associated with a variety of cellular activities Apre_0394 SM01091 Transporter associated domain Apre_0395 SM00116 Domain in cystathionine beta-synthase and other proteins. Apre_0395 SM01131 Apre_0395 Apre_0404 SM00481 DNA polymerase alpha chain like domain Apre_0407 SM00382 ATPases associated with a variety of cellular activities Apre_0410 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain Apre_0417 SM00382 ATPases associated with a variety of cellular activities Apre_0418 SM00382 ATPases associated with a variety of cellular activities Apre_0419 SM00347 helix_turn_helix multiple antibiotic resistance protein Apre_0429 SM00155 Phospholipase D. Active site motifs. Apre_0430 SM00345 helix_turn_helix gluconate operon transcriptional repressor Apre_0431 SM00382 ATPases associated with a variety of cellular activities Apre_0438 SM00287 Bacterial SH3 domain homologues Apre_0442 SM01230 Apre_0442 Apre_0447 SM00663 RNA polymerase I subunit A N-terminus Apre_0459 SM00838 Elongation factor G C-terminus Apre_0459 SM00889 Elongation factor G, domain IV Apre_0462 SM00382 ATPases associated with a variety of cellular activities Apre_0467 SM00382 ATPases associated with a variety of cellular activities Apre_0468 SM00382 ATPases associated with a variety of cellular activities Apre_0474 SM00642 Alpha-amylase domain Apre_0478 SM00382 ATPases associated with a variety of cellular activities Apre_0489 SM00062 Bacterial periplasmic substrate-binding proteins Apre_0489 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Apre_0490 SM00382 ATPases associated with a variety of cellular activities Apre_0501 SM00382 ATPases associated with a variety of cellular activities Apre_0504 SM00849 Metallo-beta-lactamase superfamily Apre_0514 SM00487 DEAD-like helicases superfamily Apre_0514 SM00974 Apre_0514 Apre_0517 SM00382 ATPases associated with a variety of cellular activities Apre_0528 SM00382 ATPases associated with a variety of cellular activities Apre_0538 SM00382 ATPases associated with a variety of cellular activities Apre_0544 SM00822 Apre_0544 Apre_0546 SM01060 Apre_0546 Apre_0552 SM00382 ATPases associated with a variety of cellular activities Apre_0553 SM00271 DnaJ molecular chaperone homology domain Apre_0559 SM00450 Rhodanese Homology Domain Apre_0559 SM00645 Papain family cysteine protease Apre_0563 SM01095 Cpl-7 lysozyme C-terminal domain Apre_0568 SM00530 Helix-turn-helix XRE-family like proteins Apre_0583 SM00363 S4 RNA-binding domain Apre_0584 SM00382 ATPases associated with a variety of cellular activities Apre_0585 SM00382 ATPases associated with a variety of cellular activities Apre_0588 SM00966 SpoVT / AbrB like domain Apre_0591 SM00530 Helix-turn-helix XRE-family like proteins Apre_0598 SM00479 Apre_0598 Apre_0598 SM00481 DNA polymerase alpha chain like domain Apre_0600 SM01208 Apre_0600 Apre_0603 SM00382 ATPases associated with a variety of cellular activities Apre_0607 SM00316 Ribosomal protein S1-like RNA-binding domain Apre_0607 SM00322 K homology RNA-binding domain Apre_0613 SM00904 Riboflavin kinase Apre_0614 SM01387 Apre_0614 Apre_0615 SM00316 Ribosomal protein S1-like RNA-binding domain Apre_0615 SM00322 K homology RNA-binding domain Apre_0616 SM00382 ATPases associated with a variety of cellular activities Apre_0616 SM00843 Apre_0616 Apre_0618 SM00382 ATPases associated with a variety of cellular activities Apre_0620 SM00363 S4 RNA-binding domain Apre_0622 SM00977 TilS substrate C-terminal domain Apre_0633 SM00046 Diacylglycerol kinase catalytic domain (presumed) Apre_0637 SM00382 ATPases associated with a variety of cellular activities Apre_0638 SM00854 Bacterial capsule synthesis protein PGA_cap Apre_0639 SM00014 Acid phosphatase homologues Apre_0642 SM00382 ATPases associated with a variety of cellular activities Apre_0643 SM00448 cheY-homologous receiver domain Apre_0643 SM00862 Transcriptional regulatory protein, C terminal Apre_0644 SM00387 Histidine kinase-like ATPases Apre_0659 SM00358 Double-stranded RNA binding motif Apre_0659 SM00535 Ribonuclease III family Apre_0660 SM00729 Elongator protein 3, MiaB family, Radical SAM Apre_0661 SM00968 SMC proteins Flexible Hinge Domain Apre_0666 SM00331 Sigma factor PP2C-like phosphatases Apre_0666 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Apre_0667 SM00220 Serine/Threonine protein kinases, catalytic domain Apre_0667 SM00740 Apre_0667 Apre_0675 SM00481 DNA polymerase alpha chain like domain Apre_0687 SM00382 ATPases associated with a variety of cellular activities Apre_0688 SM00382 ATPases associated with a variety of cellular activities Apre_0690 SM00382 ATPases associated with a variety of cellular activities Apre_0691 SM00382 ATPases associated with a variety of cellular activities Apre_0693 SM00857 Resolvase, N terminal domain Apre_0702 SM00382 ATPases associated with a variety of cellular activities Apre_0705 SM00529 Helix-turn-helix diphteria tox regulatory element Apre_0706 SM00342 helix_turn_helix, arabinose operon control protein Apre_0707 SM00382 ATPases associated with a variety of cellular activities Apre_0708 SM00382 ATPases associated with a variety of cellular activities Apre_0734 SM00910 Apre_0734 Apre_0737 SM00530 Helix-turn-helix XRE-family like proteins Apre_0741 SM00448 cheY-homologous receiver domain Apre_0741 SM00862 Transcriptional regulatory protein, C terminal Apre_0742 SM00387 Histidine kinase-like ATPases Apre_0742 SM00388 His Kinase A (phosphoacceptor) domain Apre_0743 SM00382 ATPases associated with a variety of cellular activities Apre_0747 SM00316 Ribosomal protein S1-like RNA-binding domain Apre_0747 SM00732 Likely ribonuclease with RNase H fold. Apre_0750 SM00357 Cold shock protein domain Apre_0750 SM00382 ATPases associated with a variety of cellular activities Apre_0750 SM00959 Rho termination factor, N-terminal domain Apre_0753 SM00937 Apre_0753 Apre_0758 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Apre_0761 SM00478 endonuclease III Apre_0765 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Apre_0768 SM01192 Apre_0768 Apre_0768 SM01193 Apre_0768 Apre_0770 SM00316 Ribosomal protein S1-like RNA-binding domain Apre_0770 SM00357 Cold shock protein domain Apre_0770 SM00955 Apre_0770 Apre_0773 SM00382 ATPases associated with a variety of cellular activities Apre_0775 SM00855 Phosphoglycerate mutase family Apre_0783 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family Apre_0787 SM00047 Lysozyme subfamily 2 Apre_0788 SM00642 Alpha-amylase domain Apre_0789 SM00116 Domain in cystathionine beta-synthase and other proteins. Apre_0790 SM00382 ATPases associated with a variety of cellular activities Apre_0792 SM00493 Apre_0792 Apre_0794 SM00640 Glycosyl hydrolases family 32 Apre_0797 SM00530 Helix-turn-helix XRE-family like proteins Apre_0798 SM00530 Helix-turn-helix XRE-family like proteins Apre_0809 SM00382 ATPases associated with a variety of cellular activities Apre_0830 SM00470 ParB-like nuclease domain Apre_0872 SM00642 Alpha-amylase domain Apre_0874 SM00240 Forkhead associated domain Apre_0881 SM00354 helix_turn _helix lactose operon repressor Apre_0886 SM00316 Ribosomal protein S1-like RNA-binding domain Apre_0890 SM00729 Elongator protein 3, MiaB family, Radical SAM Apre_0895 SM00448 cheY-homologous receiver domain Apre_0895 SM00862 Transcriptional regulatory protein, C terminal Apre_0896 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Apre_0896 SM00387 Histidine kinase-like ATPases Apre_0896 SM00388 His Kinase A (phosphoacceptor) domain Apre_0904 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Apre_0905 SM00382 ATPases associated with a variety of cellular activities Apre_0908 SM01323 Apre_0908 Apre_0910 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Apre_0910 SM00954 Region found in RelA / SpoT proteins Apre_0912 SM00849 Metallo-beta-lactamase superfamily Apre_0917 SM01207 Apre_0917 Apre_0920 SM00363 S4 RNA-binding domain Apre_0922 SM00986 Uracil DNA glycosylase superfamily Apre_0922 SM00987 UreE urease accessory protein, C-terminal domain Apre_0925 SM00981 Apre_0925 Apre_0930 SM01103 Apre_0930 Apre_0932 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Apre_0934 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Apre_0936 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Apre_0938 SM00732 Likely ribonuclease with RNase H fold. Apre_0941 SM00849 Metallo-beta-lactamase superfamily Apre_0948 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Apre_0948 SM00534 ATPase domain of DNA mismatch repair MUTS family Apre_0949 SM00853 MutL C terminal dimerisation domain Apre_0949 SM01340 Apre_0949 Apre_0953 SM00322 K homology RNA-binding domain Apre_0953 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Apre_0958 SM00382 ATPases associated with a variety of cellular activities Apre_0958 SM00962 SRP54-type protein, GTPase domain Apre_0958 SM00963 SRP54-type protein, helical bundle domain Apre_0959 SM00487 DEAD-like helicases superfamily Apre_0959 SM00490 helicase superfamily c-terminal domain Apre_0961 SM01409 Apre_0961 Apre_0962 SM00072 Guanylate kinase homologues. Apre_0964 SM00411 bacterial (prokaryotic) histone like domain Apre_0967 SM00487 DEAD-like helicases superfamily Apre_0967 SM00490 helicase superfamily c-terminal domain Apre_0967 SM00982 Apre_0967 Apre_0967 SM01058 CarD-like/TRCF domain Apre_0969 SM01400 Apre_0969 Apre_0975 SM01005 Alanine racemase, C-terminal domain Apre_0978 SM00845 GatB domain Apre_0981 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Apre_0981 SM00292 breast cancer carboxy-terminal domain Apre_0981 SM00532 Ligase N family Apre_0995 SM00488 Apre_0995 Apre_0995 SM00491 Apre_0995 Apre_1002 SM00382 ATPases associated with a variety of cellular activities Apre_1002 SM01086 C-terminal, D2-small domain, of ClpB protein Apre_1003 SM00271 DnaJ molecular chaperone homology domain Apre_1011 SM00382 ATPases associated with a variety of cellular activities Apre_1018 SM00729 Elongator protein 3, MiaB family, Radical SAM Apre_1019 SM00316 Ribosomal protein S1-like RNA-binding domain Apre_1020 SM00563 Phosphate acyltransferases Apre_1023 SM00363 S4 RNA-binding domain Apre_1027 SM00382 ATPases associated with a variety of cellular activities Apre_1034 SM00841 Elongation factor P, C-terminal Apre_1034 SM01185 Apre_1034 Apre_1039 SM00487 DEAD-like helicases superfamily Apre_1039 SM00490 helicase superfamily c-terminal domain Apre_1040 SM01120 Apre_1040 Apre_1040 SM01121 Apre_1040 Apre_1042 SM00890 Domain of unknown function Apre_1044 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Apre_1044 SM00465 GIY-YIG type nucleases (URI domain) Apre_1063 SM00890 Domain of unknown function Apre_1068 SM00116 Domain in cystathionine beta-synthase and other proteins. Apre_1068 SM00924 MgtE intracellular N domain Apre_1081 SM01120 Apre_1081 Apre_1083 SM00487 DEAD-like helicases superfamily Apre_1083 SM00490 helicase superfamily c-terminal domain Apre_1085 SM00902 Iron hydrogenase small subunit Apre_1085 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Apre_1086 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Apre_1091 SM00382 ATPases associated with a variety of cellular activities Apre_1092 SM00387 Histidine kinase-like ATPases Apre_1093 SM00448 cheY-homologous receiver domain Apre_1093 SM00862 Transcriptional regulatory protein, C terminal Apre_1095 SM00729 Elongator protein 3, MiaB family, Radical SAM Apre_1101 SM01329 Apre_1101 Apre_1105 SM01001 AIR carboxylase Apre_1106 SM00116 Domain in cystathionine beta-synthase and other proteins. Apre_1106 SM01240 Apre_1106 Apre_1107 SM01209 Apre_1107 Apre_1107 SM01210 Apre_1107 Apre_1107 SM01211 Apre_1107 Apre_1108 SM00798 AICARFT/IMPCHase bienzyme Apre_1108 SM00851 MGS-like domain Apre_1119 SM01208 Apre_1119 Apre_1132 SM00287 Bacterial SH3 domain homologues Apre_1136 SM00400 zinc finger Apre_1136 SM00493 Apre_1136 Apre_1137 SM00342 helix_turn_helix, arabinose operon control protein Apre_1147 SM00649 Ribosomal protein L11/L12 Apre_1148 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Apre_1148 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Apre_1164 SM00729 Elongator protein 3, MiaB family, Radical SAM Apre_1165 SM00271 DnaJ molecular chaperone homology domain Apre_1170 SM00729 Elongator protein 3, MiaB family, Radical SAM Apre_1177 SM00729 Elongator protein 3, MiaB family, Radical SAM Apre_1181 SM00986 Uracil DNA glycosylase superfamily Apre_1181 SM00987 UreE urease accessory protein, C-terminal domain Apre_1182 SM00838 Elongation factor G C-terminus Apre_1186 SM00849 Metallo-beta-lactamase superfamily Apre_1188 SM00382 ATPases associated with a variety of cellular activities Apre_1189 SM00382 ATPases associated with a variety of cellular activities Apre_1191 SM00530 Helix-turn-helix XRE-family like proteins Apre_1199 SM00382 ATPases associated with a variety of cellular activities Apre_1201 SM00864 Tubulin/FtsZ family, GTPase domain Apre_1201 SM00865 Tubulin/FtsZ family, C-terminal domain Apre_1215 SM00448 cheY-homologous receiver domain Apre_1215 SM00862 Transcriptional regulatory protein, C terminal Apre_1216 SM00387 Histidine kinase-like ATPases Apre_1216 SM00388 His Kinase A (phosphoacceptor) domain Apre_1220 SM00487 DEAD-like helicases superfamily Apre_1220 SM00490 helicase superfamily c-terminal domain Apre_1224 SM00347 helix_turn_helix multiple antibiotic resistance protein Apre_1225 SM00854 Bacterial capsule synthesis protein PGA_cap Apre_1229 SM00382 ATPases associated with a variety of cellular activities Apre_1238 SM00450 Rhodanese Homology Domain Apre_1239 SM00357 Cold shock protein domain Apre_1249 SM00957 SecA DEAD-like domain Apre_1249 SM00958 SecA preprotein cross-linking domain Apre_1256 SM00530 Helix-turn-helix XRE-family like proteins Apre_1256 SM00984 UDP binding domain Apre_1265 SM00901 Apre_1265 Apre_1268 SM01209 Apre_1268 Apre_1270 SM01209 Apre_1270 Apre_1280 SM00642 Alpha-amylase domain Apre_1285 SM00936 Penicillin-binding protein 5, C-terminal domain Apre_1289 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Apre_1289 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Apre_1289 SM00493 Apre_1289 Apre_1297 SM00382 ATPases associated with a variety of cellular activities Apre_1298 SM00530 Helix-turn-helix XRE-family like proteins Apre_1304 SM00382 ATPases associated with a variety of cellular activities Apre_1304 SM00962 SRP54-type protein, GTPase domain Apre_1304 SM00963 SRP54-type protein, helical bundle domain Apre_1309 SM00382 ATPases associated with a variety of cellular activities Apre_1325 SM00900 Apre_1325 Apre_1330 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs Apre_1330 SM00474 3'-5' exonuclease Apre_1330 SM00475 5'-3' exonuclease Apre_1330 SM00482 DNA polymerase A domain Apre_1333 SM00028 Tetratricopeptide repeats Apre_1335 SM00836 DALR anticodon binding domain Apre_1335 SM01016 Arginyl tRNA synthetase N terminal dom Apre_1336 SM00463 Small MutS-related domain Apre_1336 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Apre_1336 SM00534 ATPase domain of DNA mismatch repair MUTS family Apre_1339 SM00873 B3/4 domain Apre_1339 SM00874 tRNA synthetase B5 domain Apre_1339 SM00896 Ferredoxin-fold anticodon binding domain Apre_1341 SM00967 RNA 2'-O ribose methyltransferase substrate binding Apre_1345 SM00347 helix_turn_helix multiple antibiotic resistance protein Apre_1354 SM00893 Electron transfer flavoprotein domain Apre_1355 SM00893 Electron transfer flavoprotein domain Apre_1361 SM00422 helix_turn_helix, mercury resistance Apre_1365 SM00382 ATPases associated with a variety of cellular activities Apre_1366 SM00382 ATPases associated with a variety of cellular activities Apre_1367 SM00347 helix_turn_helix multiple antibiotic resistance protein Apre_1373 SM00387 Histidine kinase-like ATPases Apre_1373 SM00388 His Kinase A (phosphoacceptor) domain Apre_1374 SM00448 cheY-homologous receiver domain Apre_1374 SM00862 Transcriptional regulatory protein, C terminal Apre_1376 SM00382 ATPases associated with a variety of cellular activities Apre_1384 SM00354 helix_turn _helix lactose operon repressor Apre_1385 SM00478 endonuclease III Apre_1403 SM00729 Elongator protein 3, MiaB family, Radical SAM Apre_1404 SM01002 Alanine dehydrogenase/PNT, C-terminal domain Apre_1404 SM01003 Alanine dehydrogenase/PNT, N-terminal domain Apre_1407 SM00487 DEAD-like helicases superfamily Apre_1407 SM00490 helicase superfamily c-terminal domain Apre_1408 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Apre_1413 SM00341 Helicase and RNase D C-terminal Apre_1413 SM00487 DEAD-like helicases superfamily Apre_1413 SM00490 helicase superfamily c-terminal domain Apre_1413 SM00956 Apre_1413 Apre_1418 SM00382 ATPases associated with a variety of cellular activities Apre_1419 SM00382 ATPases associated with a variety of cellular activities Apre_1423 SM01092 CO dehydrogenase flavoprotein C-terminal domain Apre_1424 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Apre_1435 SM00345 helix_turn_helix gluconate operon transcriptional repressor Apre_1435 SM00895 Apre_1435 Apre_1436 SM00852 Probable molybdopterin binding domain Apre_1437 SM00852 Probable molybdopterin binding domain Apre_1440 SM00729 Elongator protein 3, MiaB family, Radical SAM Apre_1441 SM00382 ATPases associated with a variety of cellular activities Apre_1459 SM00899 Apre_1459 Apre_1460 SM00899 Apre_1460 Apre_1467 SM00382 ATPases associated with a variety of cellular activities Apre_1468 SM00881 CoA binding domain Apre_1470 SM00838 Elongation factor G C-terminus Apre_1480 SM00382 ATPases associated with a variety of cellular activities Apre_1501 SM00883 Chaperonin 10 Kd subunit Apre_1509 SM00650 Ribosomal RNA adenine dimethylases Apre_1510 SM00493 Apre_1510 Apre_1514 SM00363 S4 RNA-binding domain Apre_1515 SM01266 Apre_1515 Apre_1516 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Apre_1517 SM00382 ATPases associated with a variety of cellular activities Apre_1518 SM00382 ATPases associated with a variety of cellular activities Apre_1519 SM00421 helix_turn_helix, Lux Regulon Apre_1519 SM00448 cheY-homologous receiver domain Apre_1523 SM00382 ATPases associated with a variety of cellular activities Apre_1532 SM00062 Bacterial periplasmic substrate-binding proteins Apre_1533 SM00382 ATPases associated with a variety of cellular activities Apre_1537 SM00642 Alpha-amylase domain Apre_1538 SM01133 Apre_1538 Apre_1539 SM00331 Sigma factor PP2C-like phosphatases Apre_1547 SM00662 RNA polymerases D Apre_1548 SM00363 S4 RNA-binding domain Apre_1548 SM01390 Apre_1548 Apre_1552 SM00316 Ribosomal protein S1-like RNA-binding domain Apre_1563 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Apre_1564 SM01374 Apre_1564 Apre_1568 SM00322 K homology RNA-binding domain Apre_1571 SM01382 Apre_1571 Apre_1571 SM01383 Apre_1571 Apre_1575 SM01403 Apre_1575 Apre_1579 SM01208 Apre_1579 Apre_1580 SM00100 Cyclic nucleotide-monophosphate binding domain Apre_1580 SM00419 helix_turn_helix, cAMP Regulatory protein Apre_1603 SM00642 Alpha-amylase domain Apre_1614 SM00829 Enoylreductase Apre_1615 SM00345 helix_turn_helix gluconate operon transcriptional repressor Apre_1616 SM00861 Transketolase, pyrimidine binding domain Apre_1620 SM00382 ATPases associated with a variety of cellular activities Apre_1623 SM00354 helix_turn _helix lactose operon repressor Apre_1631 SM00876 Biotin and Thiamin Synthesis associated domain Apre_1640 SM00382 ATPases associated with a variety of cellular activities Apre_1644 SM00967 RNA 2'-O ribose methyltransferase substrate binding Apre_1645 SM00840 Apre_1645 Apre_1650 SM00850 LytTr DNA-binding domain Apre_1655 SM00530 Helix-turn-helix XRE-family like proteins Apre_1664 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Apre_1671 SM00382 ATPases associated with a variety of cellular activities Apre_1676 SM00450 Rhodanese Homology Domain Apre_1679 SM00347 helix_turn_helix multiple antibiotic resistance protein Apre_1682 SM01091 Transporter associated domain Apre_1705 SM01001 AIR carboxylase Apre_1710 SM00382 ATPases associated with a variety of cellular activities Apre_1717 SM00382 ATPases associated with a variety of cellular activities Apre_1718 SM00347 helix_turn_helix multiple antibiotic resistance protein Apre_1727 SM00470 ParB-like nuclease domain Apre_1729 SM00852 Probable molybdopterin binding domain Apre_1732 SM01228 Apre_1732 Apre_1735 SM00393 Putative single-stranded nucleic acids-binding domain Apre_1735 SM01245 Apre_1735 Apre_1737 SM01234 Apre_1737 Apre_1743 SM00382 ATPases associated with a variety of cellular activities Apre_1744 SM00220 Serine/Threonine protein kinases, catalytic domain Apre_1744 SM01260 Apre_1744 Apre_1745 SM00382 ATPases associated with a variety of cellular activities Apre_1755 SM00382 ATPases associated with a variety of cellular activities Apre_1757 SM00382 ATPases associated with a variety of cellular activities Apre_1760 SM00347 helix_turn_helix multiple antibiotic resistance protein Apre_1760 SM00529 Helix-turn-helix diphteria tox regulatory element Apre_1769 SM00382 ATPases associated with a variety of cellular activities Apre_1770 SM00382 ATPases associated with a variety of cellular activities Apre_1773 SM00382 ATPases associated with a variety of cellular activities Apre_1774 SM00382 ATPases associated with a variety of cellular activities Apre_1776 SM00857 Resolvase, N terminal domain Apre_1790 SM00342 helix_turn_helix, arabinose operon control protein Apre_1790 SM00871 Bacterial transcription activator, effector binding domain Apre_1795 SM00857 Resolvase, N terminal domain Apre_1798 SM00342 helix_turn_helix, arabinose operon control protein Apre_1799 SM00530 Helix-turn-helix XRE-family like proteins Apre_1802 SM00382 ATPases associated with a variety of cellular activities Apre_1804 SM01040 BRO family, N-terminal domain Apre_1822 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Apre_1822 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Apre_1822 SM00493 Apre_1822 Apre_1824 SM00487 DEAD-like helicases superfamily Apre_1824 SM00490 helicase superfamily c-terminal domain Apre_1830 SM00530 Helix-turn-helix XRE-family like proteins Apre_1833 SM00448 cheY-homologous receiver domain Apre_1833 SM00862 Transcriptional regulatory protein, C terminal Apre_1834 SM00387 Histidine kinase-like ATPases Apre_1834 SM00388 His Kinase A (phosphoacceptor) domain Apre_1835 SM00382 ATPases associated with a variety of cellular activities Apre_1840 SM00382 ATPases associated with a variety of cellular activities Apre_1844 SM00729 Elongator protein 3, MiaB family, Radical SAM Apre_1845 SM00382 ATPases associated with a variety of cellular activities Apre_1849 SM00421 helix_turn_helix, Lux Regulon Apre_1849 SM00448 cheY-homologous receiver domain Apre_1852 SM00421 helix_turn_helix, Lux Regulon Apre_1852 SM00448 cheY-homologous receiver domain