locus-tag class description BEQ56_00030 PF12801 4Fe-4S binding domain BEQ56_00040 PF00696 Amino acid kinase family BEQ56_00080 PF00483 Nucleotidyl transferase BEQ56_00085 PF00155 Aminotransferase class I and II BEQ56_00090 PF02661 Fic/DOC family BEQ56_00090 PF13784 Fic/DOC family N-terminal BEQ56_00095 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain BEQ56_00095 PF01409 tRNA synthetases class II core domain (F) BEQ56_00100 PF03483 B3/4 domain BEQ56_00100 PF03484 tRNA synthetase B5 domain BEQ56_00100 PF03147 Ferredoxin-fold anticodon binding domain BEQ56_00100 PF01588 Putative tRNA binding domain BEQ56_00100 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain BEQ56_00125 PF13416 Bacterial extracellular solute-binding protein BEQ56_00130 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_00135 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_00140 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BEQ56_00140 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BEQ56_00145 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BEQ56_00145 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BEQ56_00155 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BEQ56_00160 PF02938 GAD domain BEQ56_00160 PF00152 tRNA synthetases class II (D, K and N) BEQ56_00160 PF01336 OB-fold nucleic acid binding domain BEQ56_00165 PF00501 AMP-binding enzyme BEQ56_00165 PF13193 AMP-binding enzyme C-terminal domain BEQ56_00165 PF16177 Acetyl-coenzyme A synthetase N-terminus BEQ56_00175 PF00535 Glycosyl transferase family 2 BEQ56_00190 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BEQ56_00200 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BEQ56_00200 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BEQ56_00225 PF08402 TOBE domain BEQ56_00225 PF00005 ABC transporter BEQ56_00235 PF12833 Helix-turn-helix domain BEQ56_00235 PF00072 Response regulator receiver domain BEQ56_00240 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BEQ56_00250 PF13580 SIS domain BEQ56_00255 PF01799 [2Fe-2S] binding domain BEQ56_00255 PF00111 2Fe-2S iron-sulfur cluster binding domain BEQ56_00260 PF00941 FAD binding domain in molybdopterin dehydrogenase BEQ56_00260 PF03450 CO dehydrogenase flavoprotein C-terminal domain BEQ56_00265 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BEQ56_00265 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase BEQ56_00290 PF02608 ABC transporter substrate-binding protein PnrA-like BEQ56_00295 PF00480 ROK family BEQ56_00300 PF13407 Periplasmic binding protein domain BEQ56_00305 PF00005 ABC transporter BEQ56_00310 PF02653 Branched-chain amino acid transport system / permease component BEQ56_00315 PF07859 alpha/beta hydrolase fold BEQ56_00335 PF01648 4'-phosphopantetheinyl transferase superfamily BEQ56_00345 PF00675 Insulinase (Peptidase family M16) BEQ56_00345 PF05193 Peptidase M16 inactive domain BEQ56_00370 PF01676 Metalloenzyme superfamily BEQ56_00370 PF06415 BPG-independent PGAM N-terminus (iPGM_N) BEQ56_00375 PF03816 Cell envelope-related transcriptional attenuator domain BEQ56_00380 PF03966 Trm112p-like protein BEQ56_00385 PF04294 VanW like protein BEQ56_00400 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BEQ56_00400 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BEQ56_00400 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BEQ56_00400 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BEQ56_00405 PF01026 TatD related DNase BEQ56_00410 PF00085 Thioredoxin BEQ56_00440 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family BEQ56_00445 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BEQ56_00450 PF02653 Branched-chain amino acid transport system / permease component BEQ56_00455 PF00005 ABC transporter BEQ56_00460 PF13407 Periplasmic binding protein domain BEQ56_00465 PF01156 Inosine-uridine preferring nucleoside hydrolase BEQ56_00480 PF00485 Phosphoribulokinase / Uridine kinase family BEQ56_00500 PF02310 B12 binding domain BEQ56_00500 PF02607 B12 binding domain BEQ56_00500 PF02965 Vitamin B12 dependent methionine synthase, activation domain BEQ56_00500 PF02574 Homocysteine S-methyltransferase BEQ56_00500 PF00809 Pterin binding enzyme BEQ56_00520 PF13407 Periplasmic binding protein domain BEQ56_00525 PF00005 ABC transporter BEQ56_00530 PF02653 Branched-chain amino acid transport system / permease component BEQ56_00535 PF00294 pfkB family carbohydrate kinase BEQ56_00550 PF13419 Haloacid dehalogenase-like hydrolase BEQ56_00560 PF02583 Metal-sensitive transcriptional repressor BEQ56_00565 PF00403 Heavy-metal-associated domain BEQ56_00570 PF07992 Pyridine nucleotide-disulphide oxidoreductase BEQ56_00570 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BEQ56_00575 PF00270 DEAD/DEAH box helicase BEQ56_00575 PF13749 Putative ATP-dependent DNA helicase recG C-terminal BEQ56_00575 PF17191 RecG wedge domain BEQ56_00580 PF00005 ABC transporter BEQ56_00595 PF00128 Alpha amylase, catalytic domain BEQ56_00595 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BEQ56_00720 PF03354 Phage Terminase BEQ56_00790 PF00717 Peptidase S24-like BEQ56_00790 PF01726 LexA DNA binding domain BEQ56_00815 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BEQ56_00815 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BEQ56_00825 PF02653 Branched-chain amino acid transport system / permease component BEQ56_00830 PF02653 Branched-chain amino acid transport system / permease component BEQ56_00835 PF00005 ABC transporter BEQ56_00840 PF13407 Periplasmic binding protein domain BEQ56_00845 PF06339 Ectoine synthase BEQ56_00855 PF13407 Periplasmic binding protein domain BEQ56_00860 PF00005 ABC transporter BEQ56_00865 PF02653 Branched-chain amino acid transport system / permease component BEQ56_00870 PF01116 Fructose-bisphosphate aldolase class-II BEQ56_00875 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BEQ56_00875 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BEQ56_00880 PF00294 pfkB family carbohydrate kinase BEQ56_00885 PF01116 Fructose-bisphosphate aldolase class-II BEQ56_00890 PF02734 DAK2 domain BEQ56_00900 PF02653 Branched-chain amino acid transport system / permease component BEQ56_00905 PF00005 ABC transporter BEQ56_00910 PF13407 Periplasmic binding protein domain BEQ56_00930 PF14863 Alkyl sulfatase dimerisation BEQ56_00930 PF14864 Alkyl sulfatase C-terminal BEQ56_00930 PF00753 Metallo-beta-lactamase superfamily BEQ56_00935 PF08220 DeoR-like helix-turn-helix domain BEQ56_00935 PF00455 DeoR C terminal sensor domain BEQ56_00940 PF06445 GyrI-like small molecule binding domain BEQ56_00940 PF13411 MerR HTH family regulatory protein BEQ56_00965 PF01979 Amidohydrolase family BEQ56_00970 PF02683 Cytochrome C biogenesis protein transmembrane region BEQ56_00975 PF08534 Redoxin BEQ56_00980 PF08534 Redoxin BEQ56_00980 PF01641 SelR domain BEQ56_00980 PF01625 Peptide methionine sulfoxide reductase BEQ56_00990 PF12728 Helix-turn-helix domain BEQ56_00990 PF02661 Fic/DOC family BEQ56_00995 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BEQ56_01000 PF01475 Ferric uptake regulator family BEQ56_01005 PF01177 Asp/Glu/Hydantoin racemase BEQ56_01015 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_01020 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_01035 PF02350 UDP-N-acetylglucosamine 2-epimerase BEQ56_01040 PF01078 Magnesium chelatase, subunit ChlI BEQ56_01040 PF13335 Magnesium chelatase, subunit ChlI C-terminal BEQ56_01065 PF18073 Rubredoxin metal binding domain BEQ56_01075 PF06144 DNA polymerase III, delta subunit BEQ56_01090 PF03793 PASTA domain BEQ56_01090 PF00069 Protein kinase domain BEQ56_01125 PF02885 Glycosyl transferase family, helical bundle domain BEQ56_01125 PF00591 Glycosyl transferase family, a/b domain BEQ56_01125 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain BEQ56_01130 PF12833 Helix-turn-helix domain BEQ56_01130 PF02311 AraC-like ligand binding domain BEQ56_01135 PF00436 Single-strand binding protein family BEQ56_01145 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BEQ56_01145 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BEQ56_01150 PF00290 Tryptophan synthase alpha chain BEQ56_01155 PF02653 Branched-chain amino acid transport system / permease component BEQ56_01160 PF00005 ABC transporter BEQ56_01170 PF04198 Putative sugar-binding domain BEQ56_01185 PF00398 Ribosomal RNA adenine dimethylase BEQ56_01190 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BEQ56_01190 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BEQ56_01195 PF00483 Nucleotidyl transferase BEQ56_01200 PF00753 Metallo-beta-lactamase superfamily BEQ56_01200 PF03772 Competence protein BEQ56_01210 PF00459 Inositol monophosphatase family BEQ56_01215 PF00069 Protein kinase domain BEQ56_01215 PF03793 PASTA domain BEQ56_01225 PF07690 Major Facilitator Superfamily BEQ56_01250 PF06874 Firmicute fructose-1,6-bisphosphatase BEQ56_01255 PF01245 Ribosomal protein L19 BEQ56_01260 PF07722 Peptidase C26 BEQ56_01265 PF00809 Pterin binding enzyme BEQ56_01270 PF00480 ROK family BEQ56_01290 PF07664 Ferrous iron transport protein B C terminus BEQ56_01290 PF07670 Nucleoside recognition BEQ56_01290 PF04023 FeoA domain BEQ56_01290 PF02421 Ferrous iron transport protein B BEQ56_01290 PF17910 FeoB cytosolic helical domain BEQ56_01305 PF04321 RmlD substrate binding domain BEQ56_01310 PF00483 Nucleotidyl transferase BEQ56_01315 PF16363 GDP-mannose 4,6 dehydratase BEQ56_01320 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase BEQ56_01325 PF00535 Glycosyl transferase family 2 BEQ56_01325 PF00534 Glycosyl transferases group 1 BEQ56_01335 PF00877 NlpC/P60 family BEQ56_01340 PF13378 Enolase C-terminal domain-like BEQ56_01340 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BEQ56_01345 PF03193 RsgA GTPase BEQ56_01350 PF00905 Penicillin binding protein transpeptidase domain BEQ56_01350 PF03717 Penicillin-binding Protein dimerisation domain BEQ56_01355 PF02545 Maf-like protein BEQ56_01360 PF13635 Domain of unknown function (DUF4143) BEQ56_01360 PF13173 AAA domain BEQ56_01380 PF03412 Peptidase C39 family BEQ56_01380 PF00664 ABC transporter transmembrane region BEQ56_01380 PF00005 ABC transporter BEQ56_01385 PF00005 ABC transporter BEQ56_01385 PF00664 ABC transporter transmembrane region BEQ56_01385 PF03412 Peptidase C39 family BEQ56_01410 PF00486 Transcriptional regulatory protein, C terminal BEQ56_01410 PF00072 Response regulator receiver domain BEQ56_01440 PF00037 4Fe-4S binding domain BEQ56_01445 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BEQ56_01450 PF00005 ABC transporter BEQ56_01450 PF12848 ABC transporter BEQ56_01450 PF16326 ABC transporter C-terminal domain BEQ56_01455 PF00535 Glycosyl transferase family 2 BEQ56_01460 PF00534 Glycosyl transferases group 1 BEQ56_01460 PF13439 Glycosyltransferase Family 4 BEQ56_01470 PF00953 Glycosyl transferase family 4 BEQ56_01475 PF13439 Glycosyltransferase Family 4 BEQ56_01475 PF00534 Glycosyl transferases group 1 BEQ56_01480 PF03167 Uracil DNA glycosylase superfamily BEQ56_01485 PF00583 Acetyltransferase (GNAT) family BEQ56_01490 PF00814 Glycoprotease family BEQ56_01495 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE BEQ56_01505 PF00440 Bacterial regulatory proteins, tetR family BEQ56_01510 PF16657 Maltogenic Amylase, C-terminal domain BEQ56_01510 PF00128 Alpha amylase, catalytic domain BEQ56_01510 PF02903 Alpha amylase, N-terminal ig-like domain BEQ56_01515 PF14542 GCN5-related N-acetyl-transferase BEQ56_01520 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BEQ56_01520 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BEQ56_01535 PF00005 ABC transporter BEQ56_01540 PF12704 MacB-like periplasmic core domain BEQ56_01540 PF02687 FtsX-like permease family BEQ56_01540 PF00005 ABC transporter BEQ56_01545 PF12704 MacB-like periplasmic core domain BEQ56_01545 PF02687 FtsX-like permease family BEQ56_01545 PF00005 ABC transporter BEQ56_01550 PF00005 ABC transporter BEQ56_01550 PF12704 MacB-like periplasmic core domain BEQ56_01550 PF02687 FtsX-like permease family BEQ56_01565 PF04607 Region found in RelA / SpoT proteins BEQ56_01565 PF13291 ACT domain BEQ56_01565 PF02824 TGS domain BEQ56_01570 PF04951 D-aminopeptidase BEQ56_01580 PF02580 D-Tyr-tRNA(Tyr) deacylase BEQ56_01585 PF08459 UvrC Helix-hairpin-helix N-terminal BEQ56_01585 PF01541 GIY-YIG catalytic domain BEQ56_01585 PF12826 Helix-hairpin-helix motif BEQ56_01585 PF02151 UvrB/uvrC motif BEQ56_01595 PF01541 GIY-YIG catalytic domain BEQ56_01605 PF02163 Peptidase family M50 BEQ56_01625 PF13660 Domain of unknown function (DUF4147) BEQ56_01625 PF05161 MOFRL family BEQ56_01630 PF01432 Peptidase family M3 BEQ56_01630 PF08439 Oligopeptidase F BEQ56_01635 PF00318 Ribosomal protein S2 BEQ56_01640 PF00889 Elongation factor TS BEQ56_01645 PF00696 Amino acid kinase family BEQ56_01655 PF01209 ubiE/COQ5 methyltransferase family BEQ56_01665 PF00005 ABC transporter BEQ56_01665 PF00664 ABC transporter transmembrane region BEQ56_01670 PF00664 ABC transporter transmembrane region BEQ56_01670 PF00005 ABC transporter BEQ56_01675 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BEQ56_01680 PF00005 ABC transporter BEQ56_01685 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BEQ56_01685 PF00005 ABC transporter BEQ56_01690 PF12911 N-terminal TM domain of oligopeptide transport permease C BEQ56_01690 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_01695 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_01700 PF12833 Helix-turn-helix domain BEQ56_01710 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BEQ56_01710 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BEQ56_01730 PF04060 Putative Fe-S cluster BEQ56_01735 PF00465 Iron-containing alcohol dehydrogenase BEQ56_01740 PF00248 Aldo/keto reductase family BEQ56_01755 PF00005 ABC transporter BEQ56_01765 PF00664 ABC transporter transmembrane region BEQ56_01765 PF04954 Siderophore-interacting protein BEQ56_01765 PF08021 Siderophore-interacting FAD-binding domain BEQ56_01765 PF00005 ABC transporter BEQ56_01770 PF00664 ABC transporter transmembrane region BEQ56_01770 PF00005 ABC transporter BEQ56_01785 PF13749 Putative ATP-dependent DNA helicase recG C-terminal BEQ56_01785 PF00270 DEAD/DEAH box helicase BEQ56_01785 PF17191 RecG wedge domain BEQ56_01795 PF07992 Pyridine nucleotide-disulphide oxidoreductase BEQ56_01815 PF00107 Zinc-binding dehydrogenase BEQ56_01815 PF08240 Alcohol dehydrogenase GroES-like domain BEQ56_01825 PF01699 Sodium/calcium exchanger protein BEQ56_01835 PF17820 PDZ domain BEQ56_01835 PF13180 PDZ domain BEQ56_01865 PF08299 Bacterial dnaA protein helix-turn-helix BEQ56_01865 PF00308 Bacterial dnaA protein BEQ56_01865 PF11638 DnaA N-terminal domain BEQ56_01890 PF17932 Tetracyclin repressor-like, C-terminal domain BEQ56_01890 PF00440 Bacterial regulatory proteins, tetR family BEQ56_01895 PF00664 ABC transporter transmembrane region BEQ56_01895 PF00005 ABC transporter BEQ56_01900 PF00005 ABC transporter BEQ56_01900 PF00664 ABC transporter transmembrane region BEQ56_01915 PF00596 Class II Aldolase and Adducin N-terminal domain BEQ56_01920 PF02610 L-arabinose isomerase BEQ56_01920 PF11762 L-arabinose isomerase C-terminal domain BEQ56_01925 PF00356 Bacterial regulatory proteins, lacI family BEQ56_01935 PF00005 ABC transporter BEQ56_01940 PF02653 Branched-chain amino acid transport system / permease component BEQ56_01970 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_01975 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_01990 PF00392 Bacterial regulatory proteins, gntR family BEQ56_01990 PF07729 FCD domain BEQ56_02005 PF00356 Bacterial regulatory proteins, lacI family BEQ56_02020 PF13407 Periplasmic binding protein domain BEQ56_02025 PF00005 ABC transporter BEQ56_02030 PF02653 Branched-chain amino acid transport system / permease component BEQ56_02035 PF00107 Zinc-binding dehydrogenase BEQ56_02035 PF08240 Alcohol dehydrogenase GroES-like domain BEQ56_02040 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain BEQ56_02040 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain BEQ56_02045 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain BEQ56_02045 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain BEQ56_02050 PF13407 Periplasmic binding protein domain BEQ56_02055 PF00005 ABC transporter BEQ56_02060 PF02653 Branched-chain amino acid transport system / permease component BEQ56_02065 PF02653 Branched-chain amino acid transport system / permease component BEQ56_02075 PF00313 'Cold-shock' DNA-binding domain BEQ56_02115 PF00005 ABC transporter BEQ56_02125 PF01043 SecA preprotein cross-linking domain BEQ56_02125 PF02810 SEC-C motif BEQ56_02125 PF07517 SecA DEAD-like domain BEQ56_02125 PF07516 SecA Wing and Scaffold domain BEQ56_02130 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding BEQ56_02130 PF12170 DNA polymerase III tau subunit V interacting with alpha BEQ56_02130 PF12169 DNA polymerase III subunits gamma and tau domain III BEQ56_02140 PF12833 Helix-turn-helix domain BEQ56_02140 PF06445 GyrI-like small molecule binding domain BEQ56_02145 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF BEQ56_02145 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF BEQ56_02145 PF01189 16S rRNA methyltransferase RsmB/F BEQ56_02150 PF07091 Ribosomal RNA methyltransferase (FmrO) BEQ56_02160 PF08544 GHMP kinases C terminal BEQ56_02160 PF00288 GHMP kinases N terminal domain BEQ56_02165 PF00291 Pyridoxal-phosphate dependent enzyme BEQ56_02175 PF01063 Amino-transferase class IV BEQ56_02190 PF00717 Peptidase S24-like BEQ56_02190 PF01726 LexA DNA binding domain BEQ56_02195 PF13439 Glycosyltransferase Family 4 BEQ56_02195 PF00534 Glycosyl transferases group 1 BEQ56_02200 PF00989 PAS fold BEQ56_02200 PF00512 His Kinase A (phospho-acceptor) domain BEQ56_02200 PF16736 Single Cache-like BEQ56_02200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEQ56_02205 PF00486 Transcriptional regulatory protein, C terminal BEQ56_02205 PF00072 Response regulator receiver domain BEQ56_02210 PF13439 Glycosyltransferase Family 4 BEQ56_02215 PF00579 tRNA synthetases class I (W and Y) BEQ56_02220 PF02397 Bacterial sugar transferase BEQ56_02230 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BEQ56_02230 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BEQ56_02230 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BEQ56_02250 PF00004 ATPase family associated with various cellular activities (AAA) BEQ56_02250 PF02861 Clp amino terminal domain, pathogenicity island component BEQ56_02250 PF10431 C-terminal, D2-small domain, of ClpB protein BEQ56_02250 PF07724 AAA domain (Cdc48 subfamily) BEQ56_02250 PF17871 AAA lid domain BEQ56_02255 PF00679 Elongation factor G C-terminus BEQ56_02255 PF03144 Elongation factor Tu domain 2 BEQ56_02255 PF00009 Elongation factor Tu GTP binding domain BEQ56_02255 PF03764 Elongation factor G, domain IV BEQ56_02255 PF14492 Elongation Factor G, domain II BEQ56_02260 PF03976 Polyphosphate kinase 2 (PPK2) BEQ56_02270 PF01209 ubiE/COQ5 methyltransferase family BEQ56_02290 PF04055 Radical SAM superfamily BEQ56_02290 PF00919 Uncharacterized protein family UPF0004 BEQ56_02290 PF01938 TRAM domain BEQ56_02295 PF00488 MutS domain V BEQ56_02295 PF01713 Smr domain BEQ56_02340 PF00356 Bacterial regulatory proteins, lacI family BEQ56_02350 PF13416 Bacterial extracellular solute-binding protein BEQ56_02355 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_02365 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_02380 PF02021 Uncharacterised protein family UPF0102 BEQ56_02385 PF00108 Thiolase, N-terminal domain BEQ56_02385 PF02803 Thiolase, C-terminal domain BEQ56_02455 PF02540 NAD synthase BEQ56_02460 PF00731 AIR carboxylase BEQ56_02490 PF03477 ATP cone domain BEQ56_02495 PF00317 Ribonucleotide reductase, all-alpha domain BEQ56_02495 PF02867 Ribonucleotide reductase, barrel domain BEQ56_02495 PF03477 ATP cone domain BEQ56_02530 PF03143 Elongation factor Tu C-terminal domain BEQ56_02530 PF03144 Elongation factor Tu domain 2 BEQ56_02530 PF00009 Elongation factor Tu GTP binding domain BEQ56_02535 PF00471 Ribosomal protein L33 BEQ56_02550 PF02357 Transcription termination factor nusG BEQ56_02550 PF00467 KOW motif BEQ56_02555 PF03946 Ribosomal protein L11, N-terminal domain BEQ56_02555 PF00298 Ribosomal protein L11, RNA binding domain BEQ56_02560 PF00687 Ribosomal protein L1p/L10e family BEQ56_02570 PF00466 Ribosomal protein L10 BEQ56_02575 PF16320 Ribosomal protein L7/L12 dimerisation domain BEQ56_02575 PF00542 Ribosomal protein L7/L12 C-terminal domain BEQ56_02590 PF00210 Ferritin-like domain BEQ56_02595 PF13635 Domain of unknown function (DUF4143) BEQ56_02595 PF13173 AAA domain BEQ56_02615 PF03989 DNA gyrase C-terminal domain, beta-propeller BEQ56_02615 PF00521 DNA gyrase/topoisomerase IV, subunit A BEQ56_02630 PF17820 PDZ domain BEQ56_02630 PF13180 PDZ domain BEQ56_02655 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system BEQ56_02675 PF00037 4Fe-4S binding domain BEQ56_02675 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BEQ56_02675 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit BEQ56_02680 PF02906 Iron only hydrogenase large subunit, C-terminal domain BEQ56_02680 PF02256 Iron hydrogenase small subunit BEQ56_02680 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BEQ56_02680 PF00037 4Fe-4S binding domain BEQ56_02685 PF04555 Restriction endonuclease XhoI BEQ56_02690 PF01555 DNA methylase BEQ56_02705 PF01513 ATP-NAD kinase BEQ56_02715 PF02463 RecF/RecN/SMC N terminal domain BEQ56_02735 PF02223 Thymidylate kinase BEQ56_02740 PF13462 Thioredoxin BEQ56_02740 PF06965 Na+/H+ antiporter 1 BEQ56_02750 PF07497 Rho termination factor, RNA-binding domain BEQ56_02750 PF07498 Rho termination factor, N-terminal domain BEQ56_02750 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BEQ56_02755 PF01464 Transglycosylase SLT domain BEQ56_02755 PF01551 Peptidase family M23 BEQ56_02755 PF10145 Phage-related minor tail protein BEQ56_02770 PF01765 Ribosome recycling factor BEQ56_02775 PF01255 Putative undecaprenyl diphosphate synthase BEQ56_02805 PF03466 LysR substrate binding domain BEQ56_02805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEQ56_02815 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BEQ56_02830 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BEQ56_02830 PF00005 ABC transporter BEQ56_02835 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BEQ56_02835 PF00005 ABC transporter BEQ56_02850 PF02424 ApbE family BEQ56_02860 PF09827 CRISPR associated protein Cas2 BEQ56_02865 PF01867 CRISPR associated protein Cas1 BEQ56_02905 PF01569 PAP2 superfamily BEQ56_02910 PF00583 Acetyltransferase (GNAT) family BEQ56_02915 PF01628 HrcA protein C terminal domain BEQ56_02920 PF01025 GrpE BEQ56_02925 PF00012 Hsp70 protein BEQ56_02930 PF00226 DnaJ domain BEQ56_02930 PF01556 DnaJ C terminal domain BEQ56_02930 PF00684 DnaJ central domain BEQ56_02945 PF01230 HIT domain BEQ56_02960 PF13185 GAF domain BEQ56_02965 PF04463 Protein of unknown function (DUF523) BEQ56_02970 PF00156 Phosphoribosyl transferase domain BEQ56_02975 PF01180 Dihydroorotate dehydrogenase BEQ56_02980 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B BEQ56_02980 PF00970 Oxidoreductase FAD-binding domain BEQ56_02990 PF00571 CBS domain BEQ56_02990 PF03471 Transporter associated domain BEQ56_02995 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BEQ56_03000 PF02565 Recombination protein O C terminal BEQ56_03000 PF11967 Recombination protein O N terminal BEQ56_03010 PF00364 Biotin-requiring enzyme BEQ56_03015 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit BEQ56_03020 PF17191 RecG wedge domain BEQ56_03020 PF00270 DEAD/DEAH box helicase BEQ56_03020 PF13749 Putative ATP-dependent DNA helicase recG C-terminal BEQ56_03035 PF00226 DnaJ domain BEQ56_03035 PF01556 DnaJ C terminal domain BEQ56_03040 PF00753 Metallo-beta-lactamase superfamily BEQ56_03040 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain BEQ56_03040 PF17770 Ribonuclease J C-terminal domain BEQ56_03055 PF02653 Branched-chain amino acid transport system / permease component BEQ56_03060 PF00005 ABC transporter BEQ56_03065 PF13407 Periplasmic binding protein domain BEQ56_03070 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BEQ56_03070 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BEQ56_03080 PF13407 Periplasmic binding protein domain BEQ56_03085 PF00005 ABC transporter BEQ56_03090 PF02653 Branched-chain amino acid transport system / permease component BEQ56_03100 PF02733 Dak1 domain BEQ56_03105 PF02734 DAK2 domain BEQ56_03110 PF02502 Ribose/Galactose Isomerase BEQ56_03120 PF00575 S1 RNA binding domain BEQ56_03125 PF16363 GDP-mannose 4,6 dehydratase BEQ56_03135 PF00701 Dihydrodipicolinate synthetase family BEQ56_03145 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_03150 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_03180 PF00005 ABC transporter BEQ56_03185 PF00005 ABC transporter BEQ56_03190 PF01546 Peptidase family M20/M25/M40 BEQ56_03190 PF07687 Peptidase dimerisation domain BEQ56_03200 PF00356 Bacterial regulatory proteins, lacI family BEQ56_03205 PF11838 ERAP1-like C-terminal domain BEQ56_03205 PF01433 Peptidase family M1 domain BEQ56_03210 PF12161 HsdM N-terminal domain BEQ56_03210 PF02384 N-6 DNA Methylase BEQ56_03225 PF03461 TRCF domain BEQ56_03225 PF00271 Helicase conserved C-terminal domain BEQ56_03225 PF00270 DEAD/DEAH box helicase BEQ56_03225 PF02559 CarD-like/TRCF domain BEQ56_03225 PF17757 UvrB interaction domain BEQ56_03230 PF01195 Peptidyl-tRNA hydrolase BEQ56_03235 PF00027 Cyclic nucleotide-binding domain BEQ56_03235 PF01734 Patatin-like phospholipase BEQ56_03240 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family BEQ56_03275 PF00266 Aminotransferase class-V BEQ56_03280 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BEQ56_03300 PF00294 pfkB family carbohydrate kinase BEQ56_03310 PF12327 FtsZ family, C-terminal domain BEQ56_03310 PF00091 Tubulin/FtsZ family, GTPase domain BEQ56_03335 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BEQ56_03345 PF00312 Ribosomal protein S15 BEQ56_03350 PF00013 KH domain BEQ56_03350 PF01138 3' exoribonuclease family, domain 1 BEQ56_03350 PF03725 3' exoribonuclease family, domain 2 BEQ56_03350 PF00575 S1 RNA binding domain BEQ56_03350 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BEQ56_03360 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system BEQ56_03375 PF01554 MatE BEQ56_03400 PF01434 Peptidase family M41 BEQ56_03400 PF00004 ATPase family associated with various cellular activities (AAA) BEQ56_03400 PF17862 AAA+ lid domain BEQ56_03410 PF08279 HTH domain BEQ56_03410 PF13280 WYL domain BEQ56_03415 PF00005 ABC transporter BEQ56_03420 PF00950 ABC 3 transport family BEQ56_03425 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase BEQ56_03425 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BEQ56_03425 PF00111 2Fe-2S iron-sulfur cluster binding domain BEQ56_03425 PF01799 [2Fe-2S] binding domain BEQ56_03435 PF01799 [2Fe-2S] binding domain BEQ56_03435 PF00111 2Fe-2S iron-sulfur cluster binding domain BEQ56_03445 PF08497 Radical SAM N-terminal BEQ56_03445 PF04055 Radical SAM superfamily BEQ56_03450 PF00781 Diacylglycerol kinase catalytic domain BEQ56_03460 PF00293 NUDIX domain BEQ56_03460 PF13344 Haloacid dehalogenase-like hydrolase BEQ56_03470 PF18152 DAHP synthase ferredoxin-like domain BEQ56_03470 PF00793 DAHP synthetase I family BEQ56_03475 PF02153 Prephenate dehydrogenase BEQ56_03480 PF01761 3-dehydroquinate synthase BEQ56_03485 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BEQ56_03490 PF01264 Chorismate synthase BEQ56_03500 PF08501 Shikimate dehydrogenase substrate binding domain BEQ56_03500 PF01488 Shikimate / quinate 5-dehydrogenase BEQ56_03500 PF18317 Shikimate 5'-dehydrogenase C-terminal domain BEQ56_03505 PF01220 Dehydroquinase class II BEQ56_03510 PF02277 Phosphoribosyltransferase BEQ56_03555 PF06071 Protein of unknown function (DUF933) BEQ56_03555 PF01926 50S ribosome-binding GTPase BEQ56_03565 PF04542 Sigma-70 region 2 BEQ56_03565 PF08281 Sigma-70, region 4 BEQ56_03570 PF01612 3'-5' exonuclease BEQ56_03570 PF00476 DNA polymerase family A BEQ56_03570 PF01367 5'-3' exonuclease, C-terminal SAM fold BEQ56_03570 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BEQ56_03575 PF16363 GDP-mannose 4,6 dehydratase BEQ56_03585 PF16875 Glycosyl hydrolase family 36 N-terminal domain BEQ56_03585 PF16874 Glycosyl hydrolase family 36 C-terminal domain BEQ56_03590 PF00202 Aminotransferase class-III BEQ56_03600 PF06968 Biotin and Thiamin Synthesis associated domain BEQ56_03600 PF04055 Radical SAM superfamily BEQ56_03605 PF02237 Biotin protein ligase C terminal domain BEQ56_03605 PF08279 HTH domain BEQ56_03605 PF03099 Biotin/lipoate A/B protein ligase family BEQ56_03610 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BEQ56_03625 PF13749 Putative ATP-dependent DNA helicase recG C-terminal BEQ56_03625 PF00270 DEAD/DEAH box helicase BEQ56_03625 PF17191 RecG wedge domain BEQ56_03630 PF00440 Bacterial regulatory proteins, tetR family BEQ56_03635 PF00403 Heavy-metal-associated domain BEQ56_03640 PF11897 Protein of unknown function (DUF3417) BEQ56_03640 PF00343 Carbohydrate phosphorylase BEQ56_03645 PF13419 Haloacid dehalogenase-like hydrolase BEQ56_03650 PF03819 MazG nucleotide pyrophosphohydrolase domain BEQ56_03665 PF01979 Amidohydrolase family BEQ56_03670 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BEQ56_03670 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BEQ56_03670 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BEQ56_03675 PF01370 NAD dependent epimerase/dehydratase family BEQ56_03695 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BEQ56_03705 PF01297 Zinc-uptake complex component A periplasmic BEQ56_03710 PF00005 ABC transporter BEQ56_03715 PF00950 ABC 3 transport family BEQ56_03720 PF00950 ABC 3 transport family BEQ56_03735 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_03740 PF08402 TOBE domain BEQ56_03740 PF00005 ABC transporter BEQ56_03745 PF02464 Competence-damaged protein BEQ56_03745 PF00994 Probable molybdopterin binding domain BEQ56_03760 PF00005 ABC transporter BEQ56_03780 PF08279 HTH domain BEQ56_03780 PF13280 WYL domain BEQ56_03795 PF01116 Fructose-bisphosphate aldolase class-II BEQ56_03800 PF00365 Phosphofructokinase BEQ56_03805 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BEQ56_03805 PF00005 ABC transporter BEQ56_03810 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BEQ56_03810 PF00005 ABC transporter BEQ56_03815 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BEQ56_03820 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_03825 PF12911 N-terminal TM domain of oligopeptide transport permease C BEQ56_03825 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_03835 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BEQ56_03845 PF08241 Methyltransferase domain BEQ56_03850 PF01042 Endoribonuclease L-PSP BEQ56_03855 PF00535 Glycosyl transferase family 2 BEQ56_03860 PF02397 Bacterial sugar transferase BEQ56_03865 PF02719 Polysaccharide biosynthesis protein BEQ56_03900 PF01595 Cyclin M transmembrane N-terminal domain BEQ56_03900 PF03471 Transporter associated domain BEQ56_03900 PF00571 CBS domain BEQ56_03905 PF13476 AAA domain BEQ56_03910 PF13439 Glycosyltransferase Family 4 BEQ56_03910 PF00534 Glycosyl transferases group 1 BEQ56_03925 PF08271 TFIIB zinc-binding BEQ56_03935 PF00005 ABC transporter BEQ56_03940 PF01032 FecCD transport family BEQ56_03950 PF00005 ABC transporter BEQ56_03950 PF00664 ABC transporter transmembrane region BEQ56_03955 PF00664 ABC transporter transmembrane region BEQ56_03955 PF00005 ABC transporter BEQ56_03960 PF08241 Methyltransferase domain BEQ56_03960 PF13649 Methyltransferase domain BEQ56_03965 PF00795 Carbon-nitrogen hydrolase BEQ56_03965 PF02540 NAD synthase BEQ56_03980 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_03990 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_04040 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BEQ56_04040 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BEQ56_04045 PF13407 Periplasmic binding protein domain BEQ56_04050 PF00005 ABC transporter BEQ56_04055 PF02653 Branched-chain amino acid transport system / permease component BEQ56_04060 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BEQ56_04060 PF07992 Pyridine nucleotide-disulphide oxidoreductase BEQ56_04085 PF04225 Opacity-associated protein A LysM-like domain BEQ56_04085 PF01551 Peptidase family M23 BEQ56_04110 PF00119 ATP synthase A chain BEQ56_04115 PF00137 ATP synthase subunit C BEQ56_04145 PF09397 Ftsk gamma domain BEQ56_04145 PF01580 FtsK/SpoIIIE family BEQ56_04145 PF13491 4TM region of DNA translocase FtsK/SpoIIIE BEQ56_04145 PF17854 FtsK alpha domain BEQ56_04160 PF00486 Transcriptional regulatory protein, C terminal BEQ56_04160 PF00072 Response regulator receiver domain BEQ56_04165 PF00672 HAMP domain BEQ56_04165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEQ56_04165 PF00512 His Kinase A (phospho-acceptor) domain BEQ56_04170 PF00005 ABC transporter BEQ56_04185 PF00005 ABC transporter BEQ56_04210 PF00588 SpoU rRNA Methylase family BEQ56_04210 PF08032 RNA 2'-O ribose methyltransferase substrate binding BEQ56_04225 PF13173 AAA domain BEQ56_04225 PF13635 Domain of unknown function (DUF4143) BEQ56_04245 PF00535 Glycosyl transferase family 2 BEQ56_04250 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BEQ56_04250 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BEQ56_04255 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BEQ56_04260 PF16363 GDP-mannose 4,6 dehydratase BEQ56_04270 PF02142 MGS-like domain BEQ56_04270 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BEQ56_04270 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BEQ56_04285 PF00270 DEAD/DEAH box helicase BEQ56_04285 PF17191 RecG wedge domain BEQ56_04285 PF13749 Putative ATP-dependent DNA helicase recG C-terminal BEQ56_04290 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase BEQ56_04300 PF02654 Cobalamin-5-phosphate synthase BEQ56_04320 PF00005 ABC transporter BEQ56_04320 PF00664 ABC transporter transmembrane region BEQ56_04325 PF00005 ABC transporter BEQ56_04325 PF00664 ABC transporter transmembrane region BEQ56_04340 PF00005 ABC transporter BEQ56_04345 PF01370 NAD dependent epimerase/dehydratase family BEQ56_04350 PF00535 Glycosyl transferase family 2 BEQ56_04360 PF00580 UvrD/REP helicase N-terminal domain BEQ56_04360 PF13361 UvrD-like helicase C-terminal domain BEQ56_04365 PF00633 Helix-hairpin-helix motif BEQ56_04365 PF00730 HhH-GPD superfamily base excision DNA repair protein BEQ56_04365 PF14815 NUDIX domain BEQ56_04375 PF12706 Beta-lactamase superfamily domain BEQ56_04380 PF01176 Translation initiation factor 1A / IF-1 BEQ56_04385 PF01165 Ribosomal protein S21 BEQ56_04395 PF01975 Survival protein SurE BEQ56_04420 PF02653 Branched-chain amino acid transport system / permease component BEQ56_04425 PF00005 ABC transporter BEQ56_04430 PF01555 DNA methylase BEQ56_04435 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BEQ56_04440 PF04452 RNA methyltransferase BEQ56_04445 PF14622 Ribonuclease-III-like BEQ56_04445 PF00035 Double-stranded RNA binding motif BEQ56_04450 PF02463 RecF/RecN/SMC N terminal domain BEQ56_04450 PF06470 SMC proteins Flexible Hinge Domain BEQ56_04455 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BEQ56_04455 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BEQ56_04455 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BEQ56_04455 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BEQ56_04460 PF17191 RecG wedge domain BEQ56_04460 PF00271 Helicase conserved C-terminal domain BEQ56_04460 PF00270 DEAD/DEAH box helicase BEQ56_04465 PF01467 Cytidylyltransferase-like BEQ56_04505 PF03023 Lipid II flippase MurJ BEQ56_04510 PF01593 Flavin containing amine oxidoreductase BEQ56_04515 PF03781 Sulfatase-modifying factor enzyme 1 BEQ56_04520 PF01225 Mur ligase family, catalytic domain BEQ56_04520 PF02875 Mur ligase family, glutamate ligase domain BEQ56_04520 PF08245 Mur ligase middle domain BEQ56_04525 PF13396 Phospholipase_D-nuclease N-terminal BEQ56_04525 PF13091 PLD-like domain BEQ56_04535 PF03793 PASTA domain BEQ56_04535 PF00069 Protein kinase domain BEQ56_04540 PF00069 Protein kinase domain BEQ56_04540 PF03793 PASTA domain BEQ56_04545 PF03793 PASTA domain BEQ56_04545 PF00069 Protein kinase domain BEQ56_04550 PF01547 Bacterial extracellular solute-binding protein BEQ56_04555 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_04560 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_04575 PF01425 Amidase BEQ56_04580 PF02934 GatB/GatE catalytic domain BEQ56_04580 PF02637 GatB domain BEQ56_04590 PF14307 Glycosyltransferase WbsX BEQ56_04590 PF05045 Rhamnan synthesis protein F BEQ56_04600 PF00756 Putative esterase BEQ56_04600 PF00331 Glycosyl hydrolase family 10 BEQ56_04615 PF01209 ubiE/COQ5 methyltransferase family BEQ56_04625 PF02614 Glucuronate isomerase BEQ56_04635 PF00106 short chain dehydrogenase BEQ56_04645 PF07804 HipA-like C-terminal domain BEQ56_04655 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BEQ56_04655 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BEQ56_04660 PF07992 Pyridine nucleotide-disulphide oxidoreductase BEQ56_04660 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BEQ56_04665 PF00128 Alpha amylase, catalytic domain BEQ56_04665 PF09154 Domain of unknown function (DUF1939) BEQ56_04670 PF00005 ABC transporter BEQ56_04675 PF01032 FecCD transport family BEQ56_04685 PF07685 CobB/CobQ-like glutamine amidotransferase domain BEQ56_04685 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BEQ56_04690 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BEQ56_04695 PF01888 CbiD BEQ56_04700 PF02570 Precorrin-8X methylmutase BEQ56_04705 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BEQ56_04710 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BEQ56_04715 PF06180 Cobalt chelatase (CbiK) BEQ56_04720 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP BEQ56_04725 PF00005 ABC transporter BEQ56_04730 PF02361 Cobalt transport protein BEQ56_04735 PF02553 Cobalt transport protein component CbiN BEQ56_04740 PF01891 Cobalt uptake substrate-specific transmembrane region BEQ56_04745 PF01969 Protein of unknown function DUF111 BEQ56_04765 PF00549 CoA-ligase BEQ56_04765 PF08442 ATP-grasp domain BEQ56_04770 PF02629 CoA binding domain BEQ56_04770 PF00549 CoA-ligase BEQ56_04775 PF00550 Phosphopantetheine attachment site BEQ56_04785 PF01546 Peptidase family M20/M25/M40 BEQ56_04785 PF07687 Peptidase dimerisation domain BEQ56_04790 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BEQ56_04790 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BEQ56_04795 PF00005 ABC transporter BEQ56_04800 PF02492 CobW/HypB/UreG, nucleotide-binding domain BEQ56_04810 PF00056 lactate/malate dehydrogenase, NAD binding domain BEQ56_04810 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BEQ56_04845 PF00156 Phosphoribosyl transferase domain BEQ56_04850 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus BEQ56_04850 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BEQ56_04865 PF08207 Elongation factor P (EF-P) KOW-like domain BEQ56_04865 PF09285 Elongation factor P, C-terminal BEQ56_04865 PF01132 Elongation factor P (EF-P) OB domain BEQ56_04870 PF17862 AAA+ lid domain BEQ56_04870 PF00004 ATPase family associated with various cellular activities (AAA) BEQ56_04870 PF01434 Peptidase family M41 BEQ56_04880 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BEQ56_04880 PF01926 50S ribosome-binding GTPase BEQ56_04890 PF08275 DNA primase catalytic core, N-terminal domain BEQ56_04890 PF10410 DnaB-helicase binding domain of primase BEQ56_04890 PF01807 CHC2 zinc finger BEQ56_04895 PF03979 Sigma-70 factor, region 1.1 BEQ56_04895 PF04539 Sigma-70 region 3 BEQ56_04895 PF04545 Sigma-70, region 4 BEQ56_04895 PF00140 Sigma-70 factor, region 1.2 BEQ56_04895 PF04542 Sigma-70 region 2 BEQ56_04905 PF00550 Phosphopantetheine attachment site BEQ56_04920 PF03062 MBOAT, membrane-bound O-acyltransferase family BEQ56_04935 PF00570 HRDC domain BEQ56_04935 PF01612 3'-5' exonuclease BEQ56_04945 PF10458 Valyl tRNA synthetase tRNA binding arm BEQ56_04945 PF00133 tRNA synthetases class I (I, L, M and V) BEQ56_04945 PF08264 Anticodon-binding domain of tRNA BEQ56_04955 PF00950 ABC 3 transport family BEQ56_04960 PF00005 ABC transporter BEQ56_04965 PF01297 Zinc-uptake complex component A periplasmic BEQ56_04975 PF00639 PPIC-type PPIASE domain BEQ56_04990 PF17760 UvrA interaction domain BEQ56_04990 PF17755 UvrA DNA-binding domain BEQ56_05005 PF03449 Transcription elongation factor, N-terminal BEQ56_05005 PF01272 Transcription elongation factor, GreA/GreB, C-term BEQ56_05010 PF01336 OB-fold nucleic acid binding domain BEQ56_05010 PF00152 tRNA synthetases class II (D, K and N) BEQ56_05015 PF13419 Haloacid dehalogenase-like hydrolase BEQ56_05030 PF02163 Peptidase family M50 BEQ56_05030 PF17820 PDZ domain BEQ56_05050 PF00468 Ribosomal protein L34 BEQ56_05055 PF00825 Ribonuclease P BEQ56_05060 PF01809 Putative membrane protein insertion efficiency factor BEQ56_05070 PF02096 60Kd inner membrane protein BEQ56_05070 PF14849 YidC periplasmic domain BEQ56_05085 PF00800 Prephenate dehydratase BEQ56_05085 PF01817 Chorismate mutase type II BEQ56_05095 PF00128 Alpha amylase, catalytic domain BEQ56_05110 PF05958 tRNA (Uracil-5-)-methyltransferase BEQ56_05110 PF01938 TRAM domain BEQ56_05115 PF11799 impB/mucB/samB family C-terminal domain BEQ56_05115 PF00817 impB/mucB/samB family BEQ56_05115 PF11798 IMS family HHH motif BEQ56_05130 PF00154 recA bacterial DNA recombination protein BEQ56_05135 PF02653 Branched-chain amino acid transport system / permease component BEQ56_05140 PF00005 ABC transporter BEQ56_05150 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BEQ56_05150 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BEQ56_05155 PF01261 Xylose isomerase-like TIM barrel BEQ56_05165 PF01869 BadF/BadG/BcrA/BcrD ATPase family BEQ56_05215 PF00486 Transcriptional regulatory protein, C terminal BEQ56_05215 PF00072 Response regulator receiver domain BEQ56_05220 PF00512 His Kinase A (phospho-acceptor) domain BEQ56_05220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEQ56_05220 PF00672 HAMP domain BEQ56_05260 PF00368 Hydroxymethylglutaryl-coenzyme A reductase BEQ56_05275 PF01979 Amidohydrolase family BEQ56_05300 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BEQ56_05300 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BEQ56_05300 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BEQ56_05305 PF00579 tRNA synthetases class I (W and Y) BEQ56_05330 PF00005 ABC transporter BEQ56_05330 PF12558 ATP-binding cassette cobalt transporter BEQ56_05340 PF07155 ECF-type riboflavin transporter, S component BEQ56_05345 PF00005 ABC transporter BEQ56_05350 PF12399 Branched-chain amino acid ATP-binding cassette transporter BEQ56_05350 PF00005 ABC transporter BEQ56_05355 PF11862 Domain of unknown function (DUF3382) BEQ56_05355 PF02653 Branched-chain amino acid transport system / permease component BEQ56_05360 PF02653 Branched-chain amino acid transport system / permease component BEQ56_05365 PF13458 Periplasmic binding protein BEQ56_05370 PF01261 Xylose isomerase-like TIM barrel BEQ56_05375 PF07690 Major Facilitator Superfamily BEQ56_05395 PF08402 TOBE domain BEQ56_05395 PF00005 ABC transporter BEQ56_05400 PF08220 DeoR-like helix-turn-helix domain BEQ56_05400 PF00455 DeoR C terminal sensor domain BEQ56_05415 PF00958 GMP synthase C terminal domain BEQ56_05415 PF02540 NAD synthase BEQ56_05415 PF00117 Glutamine amidotransferase class-I BEQ56_05445 PF01048 Phosphorylase superfamily BEQ56_05465 PF17854 FtsK alpha domain BEQ56_05465 PF01580 FtsK/SpoIIIE family BEQ56_05465 PF09397 Ftsk gamma domain BEQ56_05465 PF13491 4TM region of DNA translocase FtsK/SpoIIIE BEQ56_05475 PF01790 Prolipoprotein diacylglyceryl transferase BEQ56_05480 PF01479 S4 domain BEQ56_05480 PF00849 RNA pseudouridylate synthase BEQ56_05485 PF01252 Signal peptidase (SPase) II BEQ56_05500 PF00689 Cation transporting ATPase, C-terminus BEQ56_05500 PF00690 Cation transporter/ATPase, N-terminus BEQ56_05515 PF00892 EamA-like transporter family BEQ56_05600 PF05034 Methylaspartate ammonia-lyase N-terminus BEQ56_05600 PF07476 Methylaspartate ammonia-lyase C-terminus BEQ56_05605 PF06368 Methylaspartate mutase E chain (MutE) BEQ56_05610 PF13941 MutL protein BEQ56_05615 PF02310 B12 binding domain BEQ56_05620 PF00392 Bacterial regulatory proteins, gntR family BEQ56_05620 PF07702 UTRA domain BEQ56_05630 PF05681 Fumarate hydratase (Fumerase) BEQ56_05640 PF10431 C-terminal, D2-small domain, of ClpB protein BEQ56_05640 PF07724 AAA domain (Cdc48 subfamily) BEQ56_05640 PF17871 AAA lid domain BEQ56_05640 PF00004 ATPase family associated with various cellular activities (AAA) BEQ56_05640 PF02861 Clp amino terminal domain, pathogenicity island component BEQ56_05645 PF00072 Response regulator receiver domain BEQ56_05645 PF12833 Helix-turn-helix domain BEQ56_05655 PF13407 Periplasmic binding protein domain BEQ56_05660 PF00005 ABC transporter BEQ56_05665 PF02653 Branched-chain amino acid transport system / permease component BEQ56_05670 PF02653 Branched-chain amino acid transport system / permease component BEQ56_05680 PF07690 Major Facilitator Superfamily BEQ56_05685 PF03009 Glycerophosphoryl diester phosphodiesterase family BEQ56_05695 PF04359 Protein of unknown function (DUF493) BEQ56_05705 PF04055 Radical SAM superfamily BEQ56_05705 PF06969 HemN C-terminal domain BEQ56_05715 PF01209 ubiE/COQ5 methyltransferase family BEQ56_05730 PF14602 Hexapeptide repeat of succinyl-transferase BEQ56_05730 PF00132 Bacterial transferase hexapeptide (six repeats) BEQ56_05730 PF12464 Maltose acetyltransferase BEQ56_05745 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BEQ56_05745 PF00005 ABC transporter BEQ56_05750 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BEQ56_05750 PF00005 ABC transporter BEQ56_05755 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_05755 PF12911 N-terminal TM domain of oligopeptide transport permease C BEQ56_05760 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_05765 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BEQ56_05775 PF00701 Dihydrodipicolinate synthetase family BEQ56_05785 PF04074 YhcH/YjgK/YiaL BEQ56_05790 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase BEQ56_05795 PF12833 Helix-turn-helix domain BEQ56_05795 PF02311 AraC-like ligand binding domain BEQ56_05800 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_05815 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BEQ56_05815 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BEQ56_05825 PF00356 Bacterial regulatory proteins, lacI family BEQ56_05830 PF02734 DAK2 domain BEQ56_05835 PF02733 Dak1 domain BEQ56_05840 PF04115 Ureidoglycolate lyase BEQ56_05845 PF02653 Branched-chain amino acid transport system / permease component BEQ56_05850 PF02653 Branched-chain amino acid transport system / permease component BEQ56_05855 PF00005 ABC transporter BEQ56_05870 PF03313 Serine dehydratase alpha chain BEQ56_05900 PF01624 MutS domain I BEQ56_05900 PF00488 MutS domain V BEQ56_05900 PF05192 MutS domain III BEQ56_05900 PF05188 MutS domain II BEQ56_05900 PF05190 MutS family domain IV BEQ56_05905 PF00588 SpoU rRNA Methylase family BEQ56_05905 PF08032 RNA 2'-O ribose methyltransferase substrate binding BEQ56_05915 PF02502 Ribose/Galactose Isomerase BEQ56_05920 PF01894 Uncharacterised protein family UPF0047 BEQ56_05925 PF02653 Branched-chain amino acid transport system / permease component BEQ56_05930 PF00005 ABC transporter BEQ56_05940 PF01266 FAD dependent oxidoreductase BEQ56_05945 PF04324 BFD-like [2Fe-2S] binding domain BEQ56_05945 PF07992 Pyridine nucleotide-disulphide oxidoreductase BEQ56_05955 PF12867 DinB superfamily BEQ56_05955 PF03781 Sulfatase-modifying factor enzyme 1 BEQ56_05960 PF02911 Formyl transferase, C-terminal domain BEQ56_05960 PF00551 Formyl transferase BEQ56_05965 PF02558 Ketopantoate reductase PanE/ApbA BEQ56_05965 PF08546 Ketopantoate reductase PanE/ApbA C terminal BEQ56_05975 PF02673 Bacitracin resistance protein BacA BEQ56_05985 PF00625 Guanylate kinase BEQ56_06000 PF00535 Glycosyl transferase family 2 BEQ56_06005 PF03099 Biotin/lipoate A/B protein ligase family BEQ56_06005 PF10437 Bacterial lipoate protein ligase C-terminus BEQ56_06015 PF03481 Putative GTP-binding controlling metal-binding BEQ56_06015 PF01300 Telomere recombination BEQ56_06020 PF05175 Methyltransferase small domain BEQ56_06020 PF17827 PrmC N-terminal domain BEQ56_06035 PF04402 Protein of unknown function (DUF541) BEQ56_06040 PF00255 Glutathione peroxidase BEQ56_06045 PF00834 Ribulose-phosphate 3 epimerase family BEQ56_06050 PF03793 PASTA domain BEQ56_06050 PF00069 Protein kinase domain BEQ56_06065 PF00486 Transcriptional regulatory protein, C terminal BEQ56_06065 PF00072 Response regulator receiver domain BEQ56_06070 PF00011 Hsp20/alpha crystallin family BEQ56_06075 PF05025 RbsD / FucU transport protein family BEQ56_06085 PF13407 Periplasmic binding protein domain BEQ56_06090 PF02653 Branched-chain amino acid transport system / permease component BEQ56_06095 PF00005 ABC transporter BEQ56_06105 PF02653 Branched-chain amino acid transport system / permease component BEQ56_06110 PF00005 ABC transporter BEQ56_06120 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BEQ56_06120 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BEQ56_06125 PF02780 Transketolase, C-terminal domain BEQ56_06125 PF02779 Transketolase, pyrimidine binding domain BEQ56_06130 PF00456 Transketolase, thiamine diphosphate binding domain BEQ56_06135 PF04198 Putative sugar-binding domain BEQ56_06140 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BEQ56_06140 PF01926 50S ribosome-binding GTPase BEQ56_06145 PF10502 Signal peptidase, peptidase S26 BEQ56_06160 PF02608 ABC transporter substrate-binding protein PnrA-like BEQ56_06180 PF01050 Mannose-6-phosphate isomerase BEQ56_06180 PF00483 Nucleotidyl transferase BEQ56_06185 PF01820 D-ala D-ala ligase N-terminus BEQ56_06185 PF07478 D-ala D-ala ligase C-terminus BEQ56_06190 PF00118 TCP-1/cpn60 chaperonin family BEQ56_06195 PF00166 Chaperonin 10 Kd subunit BEQ56_06200 PF01746 tRNA (Guanine-1)-methyltransferase BEQ56_06205 PF01702 Queuine tRNA-ribosyltransferase BEQ56_06240 PF02608 ABC transporter substrate-binding protein PnrA-like BEQ56_06255 PF13291 ACT domain BEQ56_06255 PF00291 Pyridoxal-phosphate dependent enzyme BEQ56_06260 PF00465 Iron-containing alcohol dehydrogenase BEQ56_06260 PF00171 Aldehyde dehydrogenase family BEQ56_06270 PF04229 GrpB protein BEQ56_06270 PF13673 Acetyltransferase (GNAT) domain BEQ56_06275 PF12833 Helix-turn-helix domain BEQ56_06280 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_06285 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_06305 PF03186 CobD/Cbib protein BEQ56_06310 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BEQ56_06310 PF07685 CobB/CobQ-like glutamine amidotransferase domain BEQ56_06320 PF00596 Class II Aldolase and Adducin N-terminal domain BEQ56_06325 PF01008 Initiation factor 2 subunit family BEQ56_06335 PF01048 Phosphorylase superfamily BEQ56_06365 PF02653 Branched-chain amino acid transport system / permease component BEQ56_06370 PF00005 ABC transporter BEQ56_06375 PF12833 Helix-turn-helix domain BEQ56_06375 PF06719 AraC-type transcriptional regulator N-terminus BEQ56_06380 PF00596 Class II Aldolase and Adducin N-terminal domain BEQ56_06385 PF05025 RbsD / FucU transport protein family BEQ56_06390 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BEQ56_06390 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BEQ56_06395 PF07881 L-fucose isomerase, first N-terminal domain BEQ56_06395 PF02952 L-fucose isomerase, C-terminal domain BEQ56_06395 PF07882 L-fucose isomerase, second N-terminal domain BEQ56_06400 PF00465 Iron-containing alcohol dehydrogenase BEQ56_06405 PF08245 Mur ligase middle domain BEQ56_06405 PF02875 Mur ligase family, glutamate ligase domain BEQ56_06410 PF02190 ATP-dependent protease La (LON) substrate-binding domain BEQ56_06410 PF05362 Lon protease (S16) C-terminal proteolytic domain BEQ56_06410 PF00004 ATPase family associated with various cellular activities (AAA) BEQ56_06420 PF05698 Bacterial trigger factor protein (TF) C-terminus BEQ56_06425 PF01084 Ribosomal protein S18 BEQ56_06430 PF01250 Ribosomal protein S6 BEQ56_06445 PF00583 Acetyltransferase (GNAT) family BEQ56_06445 PF13607 Succinyl-CoA ligase like flavodoxin domain BEQ56_06445 PF13380 CoA binding domain BEQ56_06450 PF00183 Hsp90 protein BEQ56_06455 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BEQ56_06455 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BEQ56_06460 PF04371 Porphyromonas-type peptidyl-arginine deiminase BEQ56_06465 PF13520 Amino acid permease BEQ56_06475 PF00251 Glycosyl hydrolases family 32 N-terminal domain BEQ56_06475 PF08244 Glycosyl hydrolases family 32 C terminal BEQ56_06485 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_06490 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_06495 PF00356 Bacterial regulatory proteins, lacI family BEQ56_06520 PF02403 Seryl-tRNA synthetase N-terminal domain BEQ56_06520 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BEQ56_06535 PF02577 Bifunctional nuclease BEQ56_06540 PF00772 DnaB-like helicase N terminal domain BEQ56_06540 PF03796 DnaB-like helicase C terminal domain BEQ56_06550 PF01695 IstB-like ATP binding protein BEQ56_06550 PF07319 Primosomal protein DnaI N-terminus BEQ56_06555 PF16123 Hydroxyacylglutathione hydrolase C-terminus BEQ56_06555 PF00753 Metallo-beta-lactamase superfamily BEQ56_06570 PF01497 Periplasmic binding protein BEQ56_06575 PF01032 FecCD transport family BEQ56_06580 PF00005 ABC transporter BEQ56_06590 PF01471 Putative peptidoglycan binding domain BEQ56_06590 PF17820 PDZ domain BEQ56_06590 PF03572 Peptidase family S41 BEQ56_06595 PF02978 Signal peptide binding domain BEQ56_06595 PF02881 SRP54-type protein, helical bundle domain BEQ56_06595 PF00448 SRP54-type protein, GTPase domain BEQ56_06600 PF00886 Ribosomal protein S16 BEQ56_06610 PF01782 RimM N-terminal domain BEQ56_06610 PF05239 PRC-barrel domain BEQ56_06615 PF17782 DprA winged helix domain BEQ56_06615 PF02481 DNA recombination-mediator protein A BEQ56_06620 PF01050 Mannose-6-phosphate isomerase BEQ56_06620 PF00483 Nucleotidyl transferase BEQ56_06625 PF01751 Toprim domain BEQ56_06625 PF01396 Topoisomerase DNA binding C4 zinc finger BEQ56_06625 PF01131 DNA topoisomerase BEQ56_06640 PF01966 HD domain BEQ56_06640 PF13286 Phosphohydrolase-associated domain BEQ56_06650 PF00288 GHMP kinases N terminal domain BEQ56_06650 PF08544 GHMP kinases C terminal BEQ56_06655 PF01040 UbiA prenyltransferase family BEQ56_06660 PF01728 FtsJ-like methyltransferase BEQ56_06660 PF01479 S4 domain BEQ56_06665 PF01371 Trp repressor protein BEQ56_06675 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_06685 PF06421 GTP-binding protein LepA C-terminus BEQ56_06685 PF00009 Elongation factor Tu GTP binding domain BEQ56_06685 PF00679 Elongation factor G C-terminus BEQ56_06685 PF03144 Elongation factor Tu domain 2 BEQ56_06695 PF16363 GDP-mannose 4,6 dehydratase BEQ56_06700 PF13439 Glycosyltransferase Family 4 BEQ56_06705 PF08241 Methyltransferase domain BEQ56_06730 PF02417 Chromate transporter BEQ56_06745 PF00258 Flavodoxin BEQ56_06750 PF04607 Region found in RelA / SpoT proteins BEQ56_06750 PF13291 ACT domain BEQ56_06750 PF02824 TGS domain BEQ56_06765 PF03006 Haemolysin-III related BEQ56_06825 PF00107 Zinc-binding dehydrogenase BEQ56_06825 PF08240 Alcohol dehydrogenase GroES-like domain BEQ56_06830 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BEQ56_06830 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BEQ56_06835 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain BEQ56_06835 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family BEQ56_06835 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain BEQ56_06845 PF00512 His Kinase A (phospho-acceptor) domain BEQ56_06845 PF02702 Osmosensitive K+ channel His kinase sensor domain BEQ56_06845 PF13493 Domain of unknown function (DUF4118) BEQ56_06845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEQ56_06890 PF13478 XdhC Rossmann domain BEQ56_06890 PF02625 XdhC and CoxI family BEQ56_06900 PF00586 AIR synthase related protein, N-terminal domain BEQ56_06900 PF02769 AIR synthase related protein, C-terminal domain BEQ56_06905 PF08281 Sigma-70, region 4 BEQ56_06905 PF04542 Sigma-70 region 2 BEQ56_06920 PF00005 ABC transporter BEQ56_06925 PF01458 Uncharacterized protein family (UPF0051) BEQ56_06930 PF14528 LAGLIDADG-like domain BEQ56_06930 PF01458 Uncharacterized protein family (UPF0051) BEQ56_06940 PF00266 Aminotransferase class-V BEQ56_06945 PF01592 NifU-like N terminal domain BEQ56_06955 PF02504 Fatty acid synthesis protein BEQ56_06970 PF01047 MarR family BEQ56_06970 PF00480 ROK family BEQ56_06985 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_06990 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_07000 PF03932 CutC family BEQ56_07015 PF08502 LeuA allosteric (dimerisation) domain BEQ56_07015 PF00682 HMGL-like BEQ56_07020 PF00330 Aconitase family (aconitate hydratase) BEQ56_07025 PF00694 Aconitase C-terminal domain BEQ56_07030 PF00180 Isocitrate/isopropylmalate dehydrogenase BEQ56_07035 PF05698 Bacterial trigger factor protein (TF) C-terminus BEQ56_07050 PF00365 Phosphofructokinase BEQ56_07060 PF13090 Polyphosphate kinase C-terminal domain 2 BEQ56_07060 PF13089 Polyphosphate kinase N-terminal domain BEQ56_07060 PF02503 Polyphosphate kinase middle domain BEQ56_07060 PF17941 Polyphosphate kinase C-terminal domain 1 BEQ56_07065 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BEQ56_07065 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BEQ56_07075 PF00829 Ribosomal prokaryotic L21 protein BEQ56_07080 PF01016 Ribosomal L27 protein BEQ56_07085 PF01197 Ribosomal protein L31 BEQ56_07090 PF13649 Methyltransferase domain BEQ56_07095 PF00535 Glycosyl transferase family 2 BEQ56_07135 PF08331 Domain of unknown function (DUF1730) BEQ56_07140 PF03119 NAD-dependent DNA ligase C4 zinc finger domain BEQ56_07140 PF00533 BRCA1 C Terminus (BRCT) domain BEQ56_07140 PF12826 Helix-hairpin-helix motif BEQ56_07140 PF03120 NAD-dependent DNA ligase OB-fold domain BEQ56_07140 PF01653 NAD-dependent DNA ligase adenylation domain BEQ56_07165 PF00266 Aminotransferase class-V BEQ56_07170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEQ56_07170 PF03466 LysR substrate binding domain BEQ56_07180 PF01979 Amidohydrolase family BEQ56_07190 PF00270 DEAD/DEAH box helicase BEQ56_07190 PF00271 Helicase conserved C-terminal domain BEQ56_07200 PF01636 Phosphotransferase enzyme family BEQ56_07210 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_07215 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_07230 PF12833 Helix-turn-helix domain BEQ56_07235 PF00970 Oxidoreductase FAD-binding domain BEQ56_07235 PF00175 Oxidoreductase NAD-binding domain BEQ56_07235 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B BEQ56_07240 PF07992 Pyridine nucleotide-disulphide oxidoreductase BEQ56_07240 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BEQ56_07240 PF13247 4Fe-4S dicluster domain BEQ56_07245 PF00498 FHA domain BEQ56_07245 PF12401 Protein of unknown function (DUF2662) BEQ56_07290 PF06153 Cyclic-di-AMP receptor BEQ56_07300 PF00912 Transglycosylase BEQ56_07300 PF00905 Penicillin binding protein transpeptidase domain BEQ56_07330 PF07687 Peptidase dimerisation domain BEQ56_07330 PF01546 Peptidase family M20/M25/M40 BEQ56_07335 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BEQ56_07355 PF02195 ParB-like nuclease domain BEQ56_07355 PF17762 HTH domain found in ParB protein BEQ56_07360 PF13614 AAA domain BEQ56_07370 PF04002 RadC-like JAB domain BEQ56_07380 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region BEQ56_07380 PF00326 Prolyl oligopeptidase family BEQ56_07385 PF01047 MarR family BEQ56_07385 PF00480 ROK family BEQ56_07390 PF00005 ABC transporter BEQ56_07395 PF02653 Branched-chain amino acid transport system / permease component BEQ56_07405 PF00465 Iron-containing alcohol dehydrogenase BEQ56_07415 PF02653 Branched-chain amino acid transport system / permease component BEQ56_07420 PF00005 ABC transporter BEQ56_07425 PF00294 pfkB family carbohydrate kinase BEQ56_07435 PF00107 Zinc-binding dehydrogenase BEQ56_07435 PF08240 Alcohol dehydrogenase GroES-like domain BEQ56_07455 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BEQ56_07460 PF03023 Lipid II flippase MurJ BEQ56_07470 PF00919 Uncharacterized protein family UPF0004 BEQ56_07470 PF18693 TRAM domain BEQ56_07470 PF04055 Radical SAM superfamily BEQ56_07480 PF01281 Ribosomal protein L9, N-terminal domain BEQ56_07480 PF03948 Ribosomal protein L9, C-terminal domain BEQ56_07490 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BEQ56_07490 PF02874 ATP synthase alpha/beta family, beta-barrel domain BEQ56_07490 PF00306 ATP synthase alpha/beta chain, C terminal domain BEQ56_07495 PF00231 ATP synthase BEQ56_07500 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BEQ56_07500 PF02874 ATP synthase alpha/beta family, beta-barrel domain BEQ56_07505 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BEQ56_07505 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain BEQ56_07515 PF02629 CoA binding domain BEQ56_07515 PF06971 Putative DNA-binding protein N-terminus BEQ56_07520 PF04298 Putative neutral zinc metallopeptidase BEQ56_07545 PF16360 GTP-binding GTPase Middle Region BEQ56_07545 PF13167 GTP-binding GTPase N-terminal BEQ56_07545 PF01926 50S ribosome-binding GTPase BEQ56_07565 PF01551 Peptidase family M23 BEQ56_07565 PF01476 LysM domain BEQ56_07565 PF08525 Opacity-associated protein A N-terminal motif BEQ56_07570 PF02899 Phage integrase, N-terminal SAM-like domain BEQ56_07570 PF00589 Phage integrase family BEQ56_07580 PF01029 NusB family BEQ56_07585 PF01293 Phosphoenolpyruvate carboxykinase BEQ56_07600 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_07605 PF08402 TOBE domain BEQ56_07605 PF00005 ABC transporter BEQ56_07615 PF04073 Aminoacyl-tRNA editing domain BEQ56_07630 PF00356 Bacterial regulatory proteins, lacI family BEQ56_07635 PF02653 Branched-chain amino acid transport system / permease component BEQ56_07640 PF00180 Isocitrate/isopropylmalate dehydrogenase BEQ56_07645 PF00330 Aconitase family (aconitate hydratase) BEQ56_07645 PF00694 Aconitase C-terminal domain BEQ56_07650 PF00578 AhpC/TSA family BEQ56_07655 PF14693 Ribosomal protein TL5, C-terminal domain BEQ56_07655 PF01386 Ribosomal L25p family BEQ56_07660 PF08704 tRNA methyltransferase complex GCD14 subunit BEQ56_07670 PF00300 Histidine phosphatase superfamily (branch 1) BEQ56_07675 PF08889 WbqC-like protein family BEQ56_07680 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BEQ56_07685 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BEQ56_07685 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BEQ56_07690 PF00266 Aminotransferase class-V BEQ56_07695 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BEQ56_07695 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BEQ56_07710 PF01207 Dihydrouridine synthase (Dus) BEQ56_07715 PF03692 Putative zinc- or iron-chelating domain BEQ56_07725 PF01205 Uncharacterized protein family UPF0029 BEQ56_07725 PF09186 Domain of unknown function (DUF1949) BEQ56_07740 PF00072 Response regulator receiver domain BEQ56_07740 PF00196 Bacterial regulatory proteins, luxR family BEQ56_07755 PF02592 Putative vitamin uptake transporter BEQ56_07760 PF04101 Glycosyltransferase family 28 C-terminal domain BEQ56_07760 PF03033 Glycosyltransferase family 28 N-terminal domain BEQ56_07770 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BEQ56_07770 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BEQ56_07790 PF02325 YGGT family BEQ56_07795 PF01168 Alanine racemase, N-terminal domain BEQ56_07815 PF01668 SmpB protein BEQ56_07820 PF10417 C-terminal domain of 1-Cys peroxiredoxin BEQ56_07820 PF00578 AhpC/TSA family BEQ56_07845 PF17755 UvrA DNA-binding domain BEQ56_07845 PF17760 UvrA interaction domain BEQ56_07850 PF07499 RuvA, C-terminal domain BEQ56_07850 PF01330 RuvA N terminal domain BEQ56_07855 PF00588 SpoU rRNA Methylase family BEQ56_07855 PF08032 RNA 2'-O ribose methyltransferase substrate binding BEQ56_07860 PF02075 Crossover junction endodeoxyribonuclease RuvC BEQ56_07865 PF01709 Transcriptional regulator BEQ56_07870 PF01557 Fumarylacetoacetate (FAA) hydrolase family BEQ56_07880 PF00005 ABC transporter BEQ56_07880 PF00664 ABC transporter transmembrane region BEQ56_07885 PF13186 Iron-sulfur cluster-binding domain BEQ56_07885 PF04055 Radical SAM superfamily BEQ56_07895 PF01230 HIT domain BEQ56_07900 PF01551 Peptidase family M23 BEQ56_07910 PF01551 Peptidase family M23 BEQ56_07915 PF00814 Glycoprotease family BEQ56_07920 PF00557 Metallopeptidase family M24 BEQ56_07920 PF01321 Creatinase/Prolidase N-terminal domain BEQ56_07930 PF03309 Type III pantothenate kinase BEQ56_07935 PF02441 Flavoprotein BEQ56_07935 PF04127 DNA / pantothenate metabolism flavoprotein BEQ56_07945 PF00270 DEAD/DEAH box helicase BEQ56_07945 PF00271 Helicase conserved C-terminal domain BEQ56_07945 PF09369 Domain of unknown function (DUF1998) BEQ56_07950 PF00155 Aminotransferase class I and II BEQ56_07970 PF02224 Cytidylate kinase BEQ56_07975 PF00512 His Kinase A (phospho-acceptor) domain BEQ56_07975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEQ56_07975 PF07689 KaiB domain BEQ56_07980 PF02254 TrkA-N domain BEQ56_07980 PF02080 TrkA-C domain BEQ56_07985 PF02386 Cation transport protein BEQ56_07990 PF00933 Glycosyl hydrolase family 3 N terminal domain BEQ56_07990 PF01915 Glycosyl hydrolase family 3 C-terminal domain BEQ56_07990 PF14310 Fibronectin type III-like domain BEQ56_08000 PF00709 Adenylosuccinate synthetase BEQ56_08030 PF03652 Holliday junction resolvase BEQ56_08050 PF17910 FeoB cytosolic helical domain BEQ56_08050 PF07664 Ferrous iron transport protein B C terminus BEQ56_08050 PF07670 Nucleoside recognition BEQ56_08050 PF02421 Ferrous iron transport protein B BEQ56_08055 PF00994 Probable molybdopterin binding domain BEQ56_08055 PF02464 Competence-damaged protein BEQ56_08055 PF18146 Damage-inducible protein CinA KH domain BEQ56_08060 PF08323 Starch synthase catalytic domain BEQ56_08060 PF00534 Glycosyl transferases group 1 BEQ56_08065 PF02446 4-alpha-glucanotransferase BEQ56_08075 PF00155 Aminotransferase class I and II BEQ56_08080 PF01370 NAD dependent epimerase/dehydratase family BEQ56_08090 PF01212 Beta-eliminating lyase BEQ56_08100 PF01880 Desulfoferrodoxin BEQ56_08110 PF01743 Poly A polymerase head domain BEQ56_08110 PF13735 tRNA nucleotidyltransferase domain 2 putative BEQ56_08110 PF12627 Probable RNA and SrmB- binding site of polymerase A BEQ56_08115 PF00156 Phosphoribosyl transferase domain BEQ56_08120 PF00265 Thymidine kinase BEQ56_08125 PF01256 Carbohydrate kinase BEQ56_08125 PF03853 YjeF-related protein N-terminus BEQ56_08135 PF02645 Uncharacterised protein, DegV family COG1307 BEQ56_08145 PF01063 Amino-transferase class IV BEQ56_08180 PF00005 ABC transporter BEQ56_08180 PF17912 MalK OB fold domain BEQ56_08180 PF03459 TOBE domain BEQ56_08200 PF00158 Sigma-54 interaction domain BEQ56_08200 PF02954 Bacterial regulatory protein, Fis family BEQ56_08200 PF00072 Response regulator receiver domain BEQ56_08205 PF02743 Cache domain BEQ56_08205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEQ56_08205 PF00512 His Kinase A (phospho-acceptor) domain BEQ56_08210 PF00309 Sigma-54 factor, Activator interacting domain (AID) BEQ56_08210 PF04552 Sigma-54, DNA binding domain BEQ56_08210 PF04963 Sigma-54 factor, core binding domain BEQ56_08215 PF01134 Glucose inhibited division protein A BEQ56_08220 PF00313 'Cold-shock' DNA-binding domain BEQ56_08235 PF00266 Aminotransferase class-V BEQ56_08245 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_08250 PF12911 N-terminal TM domain of oligopeptide transport permease C BEQ56_08250 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_08255 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BEQ56_08255 PF00005 ABC transporter BEQ56_08260 PF00005 ABC transporter BEQ56_08260 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BEQ56_08280 PF00005 ABC transporter BEQ56_08285 PF01032 FecCD transport family BEQ56_08290 PF01969 Protein of unknown function DUF111 BEQ56_08295 PF02660 Glycerol-3-phosphate acyltransferase BEQ56_08325 PF00338 Ribosomal protein S10p/S20e BEQ56_08330 PF03143 Elongation factor Tu C-terminal domain BEQ56_08330 PF00009 Elongation factor Tu GTP binding domain BEQ56_08330 PF03144 Elongation factor Tu domain 2 BEQ56_08335 PF00009 Elongation factor Tu GTP binding domain BEQ56_08335 PF03144 Elongation factor Tu domain 2 BEQ56_08335 PF14492 Elongation Factor G, domain II BEQ56_08335 PF03764 Elongation factor G, domain IV BEQ56_08335 PF00679 Elongation factor G C-terminus BEQ56_08340 PF00177 Ribosomal protein S7p/S5e BEQ56_08345 PF00164 Ribosomal protein S12/S23 BEQ56_08355 PF02457 DisA bacterial checkpoint controller nucleotide-binding BEQ56_08360 PF01121 Dephospho-CoA kinase BEQ56_08380 PF00128 Alpha amylase, catalytic domain BEQ56_08385 PF00128 Alpha amylase, catalytic domain BEQ56_08385 PF16657 Maltogenic Amylase, C-terminal domain BEQ56_08390 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_08395 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_08400 PF01547 Bacterial extracellular solute-binding protein BEQ56_08425 PF07549 SecD/SecF GG Motif BEQ56_08425 PF02355 Protein export membrane protein BEQ56_08430 PF02355 Protein export membrane protein BEQ56_08455 PF01979 Amidohydrolase family BEQ56_08490 PF04997 RNA polymerase Rpb1, domain 1 BEQ56_08490 PF00623 RNA polymerase Rpb1, domain 2 BEQ56_08490 PF04983 RNA polymerase Rpb1, domain 3 BEQ56_08490 PF05000 RNA polymerase Rpb1, domain 4 BEQ56_08490 PF04998 RNA polymerase Rpb1, domain 5 BEQ56_08505 PF00521 DNA gyrase/topoisomerase IV, subunit A BEQ56_08505 PF03989 DNA gyrase C-terminal domain, beta-propeller BEQ56_08510 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BEQ56_08510 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BEQ56_08525 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BEQ56_08525 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase BEQ56_08530 PF01799 [2Fe-2S] binding domain BEQ56_08530 PF00111 2Fe-2S iron-sulfur cluster binding domain BEQ56_08540 PF02896 PEP-utilising enzyme, TIM barrel domain BEQ56_08540 PF00391 PEP-utilising enzyme, mobile domain BEQ56_08540 PF05524 PEP-utilising enzyme, N-terminal BEQ56_08545 PF00381 PTS HPr component phosphorylation site BEQ56_08550 PF03613 PTS system mannose/fructose/sorbose family IID component BEQ56_08555 PF03609 PTS system sorbose-specific iic component BEQ56_08560 PF03830 PTS system sorbose subfamily IIB component BEQ56_08565 PF03610 PTS system fructose IIA component BEQ56_08575 PF01791 DeoC/LacD family aldolase BEQ56_08580 PF13556 PucR C-terminal helix-turn-helix domain BEQ56_08580 PF07905 Purine catabolism regulatory protein-like family BEQ56_08580 PF17853 GGDEF-like domain BEQ56_08585 PF01979 Amidohydrolase family BEQ56_08590 PF01979 Amidohydrolase family BEQ56_08595 PF01180 Dihydroorotate dehydrogenase BEQ56_08600 PF00111 2Fe-2S iron-sulfur cluster binding domain BEQ56_08600 PF01799 [2Fe-2S] binding domain BEQ56_08605 PF00941 FAD binding domain in molybdopterin dehydrogenase BEQ56_08605 PF03450 CO dehydrogenase flavoprotein C-terminal domain BEQ56_08610 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BEQ56_08610 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase BEQ56_08615 PF07687 Peptidase dimerisation domain BEQ56_08615 PF01546 Peptidase family M20/M25/M40 BEQ56_08630 PF02608 ABC transporter substrate-binding protein PnrA-like BEQ56_08645 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BEQ56_08645 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BEQ56_08650 PF03129 Anticodon binding domain BEQ56_08650 PF13393 Histidyl-tRNA synthetase BEQ56_08665 PF05491 RuvB C-terminal winged helix domain BEQ56_08665 PF17864 RuvB AAA lid domain BEQ56_08665 PF05496 Holliday junction DNA helicase RuvB P-loop domain BEQ56_08670 PF02547 Queuosine biosynthesis protein BEQ56_08675 PF00171 Aldehyde dehydrogenase family BEQ56_08680 PF00696 Amino acid kinase family BEQ56_08680 PF01472 PUA domain BEQ56_08685 PF00575 S1 RNA binding domain BEQ56_08695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEQ56_08695 PF00986 DNA gyrase B subunit, carboxyl terminus BEQ56_08695 PF00204 DNA gyrase B BEQ56_08695 PF01751 Toprim domain BEQ56_08700 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BEQ56_08700 PF03129 Anticodon binding domain BEQ56_08700 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BEQ56_08705 PF02653 Branched-chain amino acid transport system / permease component BEQ56_08710 PF02653 Branched-chain amino acid transport system / permease component BEQ56_08715 PF00005 ABC transporter BEQ56_08720 PF13407 Periplasmic binding protein domain BEQ56_08725 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BEQ56_08725 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BEQ56_08730 PF03437 BtpA family BEQ56_08735 PF08220 DeoR-like helix-turn-helix domain BEQ56_08735 PF00455 DeoR C terminal sensor domain BEQ56_08755 PF00664 ABC transporter transmembrane region BEQ56_08755 PF00005 ABC transporter BEQ56_08760 PF00005 ABC transporter BEQ56_08760 PF00664 ABC transporter transmembrane region BEQ56_08775 PF00069 Protein kinase domain BEQ56_08775 PF03793 PASTA domain BEQ56_08810 PF03030 Inorganic H+ pyrophosphatase BEQ56_08815 PF00294 pfkB family carbohydrate kinase BEQ56_08820 PF02653 Branched-chain amino acid transport system / permease component BEQ56_08825 PF00005 ABC transporter BEQ56_08845 PF00005 ABC transporter BEQ56_08845 PF00664 ABC transporter transmembrane region BEQ56_08850 PF00005 ABC transporter BEQ56_08865 PF00392 Bacterial regulatory proteins, gntR family BEQ56_08865 PF07702 UTRA domain BEQ56_08880 PF07992 Pyridine nucleotide-disulphide oxidoreductase BEQ56_08880 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BEQ56_08895 PF00005 ABC transporter BEQ56_08895 PF12848 ABC transporter BEQ56_08905 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_08910 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_08920 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BEQ56_08920 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BEQ56_08930 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BEQ56_08930 PF00205 Thiamine pyrophosphate enzyme, central domain BEQ56_08930 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BEQ56_08935 PF01261 Xylose isomerase-like TIM barrel BEQ56_08945 PF00162 Phosphoglycerate kinase BEQ56_08950 PF02780 Transketolase, C-terminal domain BEQ56_08950 PF02779 Transketolase, pyrimidine binding domain BEQ56_08950 PF00456 Transketolase, thiamine diphosphate binding domain BEQ56_08955 PF13292 1-deoxy-D-xylulose-5-phosphate synthase BEQ56_08955 PF02779 Transketolase, pyrimidine binding domain BEQ56_08955 PF02780 Transketolase, C-terminal domain BEQ56_08960 PF00356 Bacterial regulatory proteins, lacI family BEQ56_08965 PF09861 Lactate racemase N-terminal domain BEQ56_08970 PF00480 ROK family BEQ56_08980 PF02436 Conserved carboxylase domain BEQ56_08980 PF00364 Biotin-requiring enzyme BEQ56_08980 PF00682 HMGL-like BEQ56_08985 PF00128 Alpha amylase, catalytic domain BEQ56_08985 PF16657 Maltogenic Amylase, C-terminal domain BEQ56_08990 PF01883 Iron-sulfur cluster assembly protein BEQ56_09005 PF04954 Siderophore-interacting protein BEQ56_09005 PF08021 Siderophore-interacting FAD-binding domain BEQ56_09005 PF00005 ABC transporter BEQ56_09005 PF00664 ABC transporter transmembrane region BEQ56_09010 PF00005 ABC transporter BEQ56_09010 PF00664 ABC transporter transmembrane region BEQ56_09015 PF09587 Bacterial capsule synthesis protein PGA_cap BEQ56_09050 PF12169 DNA polymerase III subunits gamma and tau domain III BEQ56_09055 PF02575 YbaB/EbfC DNA-binding family BEQ56_09060 PF02132 RecR protein BEQ56_09060 PF13662 Toprim domain BEQ56_09085 PF01070 FMN-dependent dehydrogenase BEQ56_09100 PF00464 Serine hydroxymethyltransferase BEQ56_09105 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BEQ56_09110 PF12849 PBP superfamily domain BEQ56_09115 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_09120 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_09125 PF00005 ABC transporter BEQ56_09130 PF01895 PhoU domain BEQ56_09135 PF00391 PEP-utilising enzyme, mobile domain BEQ56_09135 PF02896 PEP-utilising enzyme, TIM barrel domain BEQ56_09135 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BEQ56_09140 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BEQ56_09140 PF03129 Anticodon binding domain BEQ56_09140 PF02824 TGS domain BEQ56_09140 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BEQ56_09145 PF02698 DUF218 domain BEQ56_09150 PF04055 Radical SAM superfamily BEQ56_09150 PF00919 Uncharacterized protein family UPF0004 BEQ56_09155 PF03807 NADP oxidoreductase coenzyme F420-dependent BEQ56_09155 PF14748 Pyrroline-5-carboxylate reductase dimerisation BEQ56_09160 PF10672 S-adenosylmethionine-dependent methyltransferase BEQ56_09160 PF01170 Putative RNA methylase family UPF0020 BEQ56_09160 PF02926 THUMP domain BEQ56_09165 PF01979 Amidohydrolase family BEQ56_09175 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BEQ56_09180 PF08241 Methyltransferase domain BEQ56_09185 PF00005 ABC transporter BEQ56_09185 PF00664 ABC transporter transmembrane region BEQ56_09190 PF00005 ABC transporter BEQ56_09190 PF00664 ABC transporter transmembrane region BEQ56_09200 PF04304 Protein of unknown function (DUF454) BEQ56_09215 PF00294 pfkB family carbohydrate kinase BEQ56_09220 PF00750 tRNA synthetases class I (R) BEQ56_09220 PF03485 Arginyl tRNA synthetase N terminal domain BEQ56_09220 PF05746 DALR anticodon binding domain BEQ56_09225 PF01649 Ribosomal protein S20 BEQ56_09235 PF06480 FtsH Extracellular BEQ56_09235 PF17862 AAA+ lid domain BEQ56_09235 PF00004 ATPase family associated with various cellular activities (AAA) BEQ56_09235 PF01434 Peptidase family M41 BEQ56_09240 PF00958 GMP synthase C terminal domain BEQ56_09240 PF00117 Glutamine amidotransferase class-I BEQ56_09240 PF01171 PP-loop family BEQ56_09245 PF00156 Phosphoribosyl transferase domain BEQ56_09250 PF00128 Alpha amylase, catalytic domain BEQ56_09250 PF02903 Alpha amylase, N-terminal ig-like domain BEQ56_09255 PF00392 Bacterial regulatory proteins, gntR family BEQ56_09255 PF00155 Aminotransferase class I and II BEQ56_09260 PF01933 Uncharacterised protein family UPF0052 BEQ56_09265 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BEQ56_09265 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BEQ56_09270 PF00162 Phosphoglycerate kinase BEQ56_09275 PF03793 PASTA domain BEQ56_09275 PF00069 Protein kinase domain BEQ56_09295 PF08239 Bacterial SH3 domain BEQ56_09295 PF00069 Protein kinase domain BEQ56_09325 PF00498 FHA domain BEQ56_09330 PF00069 Protein kinase domain BEQ56_09330 PF03793 PASTA domain BEQ56_09365 PF02734 DAK2 domain BEQ56_09370 PF02733 Dak1 domain BEQ56_09375 PF00005 ABC transporter BEQ56_09380 PF12399 Branched-chain amino acid ATP-binding cassette transporter BEQ56_09380 PF00005 ABC transporter BEQ56_09385 PF11862 Domain of unknown function (DUF3382) BEQ56_09385 PF02653 Branched-chain amino acid transport system / permease component BEQ56_09390 PF02653 Branched-chain amino acid transport system / permease component BEQ56_09410 PF13407 Periplasmic binding protein domain BEQ56_09420 PF02653 Branched-chain amino acid transport system / permease component BEQ56_09425 PF12833 Helix-turn-helix domain BEQ56_09450 PF01261 Xylose isomerase-like TIM barrel BEQ56_09455 PF04468 PSP1 C-terminal conserved region BEQ56_09465 PF03576 Peptidase family S58 BEQ56_09470 PF04542 Sigma-70 region 2 BEQ56_09470 PF04545 Sigma-70, region 4 BEQ56_09470 PF04539 Sigma-70 region 3 BEQ56_09470 PF00140 Sigma-70 factor, region 1.2 BEQ56_09470 PF03979 Sigma-70 factor, region 1.1 BEQ56_09480 PF00334 Nucleoside diphosphate kinase BEQ56_09485 PF00692 dUTPase BEQ56_09500 PF05698 Bacterial trigger factor protein (TF) C-terminus BEQ56_09500 PF05697 Bacterial trigger factor protein (TF) BEQ56_09500 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BEQ56_09505 PF00574 Clp protease BEQ56_09510 PF13344 Haloacid dehalogenase-like hydrolase BEQ56_09515 PF04055 Radical SAM superfamily BEQ56_09520 PF00448 SRP54-type protein, GTPase domain BEQ56_09520 PF02881 SRP54-type protein, helical bundle domain BEQ56_09525 PF03462 PCRF domain BEQ56_09525 PF00472 RF-1 domain BEQ56_09530 PF01741 Large-conductance mechanosensitive channel, MscL BEQ56_09550 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_09550 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_09555 PF08402 TOBE domain BEQ56_09555 PF00005 ABC transporter BEQ56_09560 PF01471 Putative peptidoglycan binding domain BEQ56_09560 PF01476 LysM domain BEQ56_09560 PF01510 N-acetylmuramoyl-L-alanine amidase BEQ56_09565 PF01471 Putative peptidoglycan binding domain BEQ56_09565 PF01476 LysM domain BEQ56_09565 PF01510 N-acetylmuramoyl-L-alanine amidase BEQ56_09570 PF02874 ATP synthase alpha/beta family, beta-barrel domain BEQ56_09570 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BEQ56_09585 PF00119 ATP synthase A chain BEQ56_09590 PF00137 ATP synthase subunit C BEQ56_09595 PF00213 ATP synthase delta (OSCP) subunit BEQ56_09600 PF02874 ATP synthase alpha/beta family, beta-barrel domain BEQ56_09600 PF00306 ATP synthase alpha/beta chain, C terminal domain BEQ56_09600 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BEQ56_09615 PF00285 Citrate synthase, C-terminal domain BEQ56_09675 PF00929 Exonuclease BEQ56_09675 PF04851 Type III restriction enzyme, res subunit BEQ56_09675 PF13307 Helicase C-terminal domain BEQ56_09700 PF01979 Amidohydrolase family BEQ56_09700 PF13382 Adenine deaminase C-terminal domain BEQ56_09705 PF01699 Sodium/calcium exchanger protein BEQ56_09715 PF00580 UvrD/REP helicase N-terminal domain BEQ56_09715 PF13361 UvrD-like helicase C-terminal domain BEQ56_09730 PF02698 DUF218 domain BEQ56_09735 PF00453 Ribosomal protein L20 BEQ56_09740 PF01632 Ribosomal protein L35 BEQ56_09745 PF05198 Translation initiation factor IF-3, N-terminal domain BEQ56_09745 PF00707 Translation initiation factor IF-3, C-terminal domain BEQ56_09750 PF02527 rRNA small subunit methyltransferase G BEQ56_09755 PF02463 RecF/RecN/SMC N terminal domain BEQ56_09760 PF01327 Polypeptide deformylase BEQ56_09780 PF07724 AAA domain (Cdc48 subfamily) BEQ56_09780 PF10431 C-terminal, D2-small domain, of ClpB protein BEQ56_09780 PF17871 AAA lid domain BEQ56_09780 PF00004 ATPase family associated with various cellular activities (AAA) BEQ56_09780 PF02861 Clp amino terminal domain, pathogenicity island component BEQ56_09795 PF09334 tRNA synthetases class I (M) BEQ56_09795 PF08264 Anticodon-binding domain of tRNA BEQ56_09795 PF00133 tRNA synthetases class I (I, L, M and V) BEQ56_09795 PF13603 Leucyl-tRNA synthetase, Domain 2 BEQ56_09810 PF01791 DeoC/LacD family aldolase BEQ56_09815 PF01418 Helix-turn-helix domain, rpiR family BEQ56_09815 PF01380 SIS domain BEQ56_09820 PF00005 ABC transporter BEQ56_09825 PF02653 Branched-chain amino acid transport system / permease component BEQ56_09830 PF13407 Periplasmic binding protein domain BEQ56_09840 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BEQ56_09845 PF01380 SIS domain BEQ56_09850 PF00480 ROK family BEQ56_09855 PF00465 Iron-containing alcohol dehydrogenase BEQ56_09875 PF00703 Glycosyl hydrolases family 2 BEQ56_09875 PF16353 Domain of unknown function(DUF4981) BEQ56_09875 PF02929 Beta galactosidase small chain BEQ56_09875 PF02837 Glycosyl hydrolases family 2, sugar binding domain BEQ56_09875 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BEQ56_09890 PF00239 Resolvase, N terminal domain BEQ56_09890 PF07508 Recombinase BEQ56_09895 PF00239 Resolvase, N terminal domain BEQ56_09895 PF02796 Helix-turn-helix domain of resolvase BEQ56_09915 PF00005 ABC transporter BEQ56_09925 PF02837 Glycosyl hydrolases family 2, sugar binding domain BEQ56_09925 PF00703 Glycosyl hydrolases family 2 BEQ56_09925 PF16353 Domain of unknown function(DUF4981) BEQ56_09925 PF02929 Beta galactosidase small chain BEQ56_09925 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BEQ56_09930 PF13407 Periplasmic binding protein domain BEQ56_09935 PF00005 ABC transporter BEQ56_09940 PF02653 Branched-chain amino acid transport system / permease component BEQ56_09950 PF00005 ABC transporter BEQ56_09955 PF00005 ABC transporter BEQ56_09955 PF12399 Branched-chain amino acid ATP-binding cassette transporter BEQ56_09960 PF11862 Domain of unknown function (DUF3382) BEQ56_09960 PF02653 Branched-chain amino acid transport system / permease component BEQ56_09965 PF02653 Branched-chain amino acid transport system / permease component BEQ56_09975 PF02774 Semialdehyde dehydrogenase, dimerisation domain BEQ56_09975 PF01118 Semialdehyde dehydrogenase, NAD binding domain BEQ56_09980 PF01842 ACT domain BEQ56_09980 PF00742 Homoserine dehydrogenase BEQ56_09980 PF03447 Homoserine dehydrogenase, NAD binding domain BEQ56_09985 PF01569 PAP2 superfamily BEQ56_09990 PF03781 Sulfatase-modifying factor enzyme 1 BEQ56_09995 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BEQ56_09995 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BEQ56_10000 PF02645 Uncharacterised protein, DegV family COG1307 BEQ56_10005 PF02645 Uncharacterised protein, DegV family COG1307 BEQ56_10010 PF02272 DHHA1 domain BEQ56_10010 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BEQ56_10010 PF01411 tRNA synthetases class II (A) BEQ56_10025 PF00005 ABC transporter BEQ56_10025 PF13732 Domain of unknown function (DUF4162) BEQ56_10040 PF02834 LigT like Phosphoesterase BEQ56_10070 PF00465 Iron-containing alcohol dehydrogenase BEQ56_10075 PF00749 tRNA synthetases class I (E and Q), catalytic domain BEQ56_10080 PF01098 Cell cycle protein BEQ56_10085 PF03717 Penicillin-binding Protein dimerisation domain BEQ56_10085 PF00905 Penicillin binding protein transpeptidase domain BEQ56_10105 PF00501 AMP-binding enzyme BEQ56_10105 PF13193 AMP-binding enzyme C-terminal domain BEQ56_10110 PF01144 Coenzyme A transferase BEQ56_10120 PF02803 Thiolase, C-terminal domain BEQ56_10120 PF00108 Thiolase, N-terminal domain BEQ56_10125 PF13458 Periplasmic binding protein BEQ56_10130 PF00005 ABC transporter BEQ56_10135 PF00005 ABC transporter BEQ56_10135 PF12399 Branched-chain amino acid ATP-binding cassette transporter BEQ56_10155 PF02595 Glycerate kinase family BEQ56_10160 PF13556 PucR C-terminal helix-turn-helix domain BEQ56_10160 PF17853 GGDEF-like domain BEQ56_10160 PF05651 Putative sugar diacid recognition BEQ56_10165 PF02971 Formiminotransferase domain BEQ56_10165 PF07837 Formiminotransferase domain, N-terminal subdomain BEQ56_10170 PF12728 Helix-turn-helix domain BEQ56_10170 PF02661 Fic/DOC family BEQ56_10175 PF07136 Protein of unknown function (DUF1385) BEQ56_10190 PF07698 7TM receptor with intracellular HD hydrolase BEQ56_10190 PF01966 HD domain BEQ56_10190 PF07697 7TM-HD extracellular BEQ56_10195 PF02130 Uncharacterized protein family UPF0054 BEQ56_10205 PF00072 Response regulator receiver domain BEQ56_10205 PF12833 Helix-turn-helix domain BEQ56_10210 PF06580 Histidine kinase BEQ56_10210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEQ56_10210 PF02743 Cache domain BEQ56_10210 PF00672 HAMP domain BEQ56_10220 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_10225 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_10245 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BEQ56_10245 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BEQ56_10270 PF01048 Phosphorylase superfamily BEQ56_10280 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BEQ56_10280 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BEQ56_10280 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BEQ56_10280 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BEQ56_10305 PF01418 Helix-turn-helix domain, rpiR family BEQ56_10305 PF01380 SIS domain BEQ56_10315 PF01116 Fructose-bisphosphate aldolase class-II BEQ56_10320 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_10325 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_10340 PF01048 Phosphorylase superfamily BEQ56_10345 PF05343 M42 glutamyl aminopeptidase BEQ56_10350 PF17876 Cold shock domain BEQ56_10350 PF08206 Ribonuclease B OB domain BEQ56_10350 PF00773 RNB domain BEQ56_10350 PF00575 S1 RNA binding domain BEQ56_10365 PF03061 Thioesterase superfamily BEQ56_10395 PF02653 Branched-chain amino acid transport system / permease component BEQ56_10400 PF02653 Branched-chain amino acid transport system / permease component BEQ56_10405 PF07687 Peptidase dimerisation domain BEQ56_10405 PF01546 Peptidase family M20/M25/M40 BEQ56_10410 PF00005 ABC transporter BEQ56_10415 PF13407 Periplasmic binding protein domain BEQ56_10425 PF02585 GlcNAc-PI de-N-acetylase BEQ56_10460 PF03412 Peptidase C39 family BEQ56_10460 PF00005 ABC transporter BEQ56_10460 PF00664 ABC transporter transmembrane region BEQ56_10495 PF00753 Metallo-beta-lactamase superfamily BEQ56_10500 PF00557 Metallopeptidase family M24 BEQ56_10500 PF01321 Creatinase/Prolidase N-terminal domain BEQ56_10520 PF00121 Triosephosphate isomerase BEQ56_10530 PF03960 ArsC family BEQ56_10585 PF01661 Macro domain BEQ56_10590 PF02082 Transcriptional regulator BEQ56_10595 PF13460 NAD(P)H-binding BEQ56_10630 PF00722 Glycosyl hydrolases family 16 BEQ56_10650 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BEQ56_10650 PF00072 Response regulator receiver domain BEQ56_10650 PF00512 His Kinase A (phospho-acceptor) domain BEQ56_10650 PF00672 HAMP domain BEQ56_10650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEQ56_10650 PF01627 Hpt domain BEQ56_10660 PF11700 Vacuole effluxer Atg22 like BEQ56_10665 PF01048 Phosphorylase superfamily BEQ56_10695 PF01048 Phosphorylase superfamily BEQ56_10700 PF01048 Phosphorylase superfamily BEQ56_10710 PF00005 ABC transporter BEQ56_10725 PF00483 Nucleotidyl transferase BEQ56_10730 PF01501 Glycosyl transferase family 8 BEQ56_10730 PF08437 Glycosyl transferase family 8 C-terminal BEQ56_10740 PF16363 GDP-mannose 4,6 dehydratase BEQ56_10745 PF16363 GDP-mannose 4,6 dehydratase BEQ56_10750 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase BEQ56_10755 PF03275 UDP-galactopyranose mutase BEQ56_10760 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BEQ56_10760 PF07733 Bacterial DNA polymerase III alpha NTPase domain BEQ56_10760 PF02811 PHP domain BEQ56_10760 PF14579 Helix-hairpin-helix motif BEQ56_10765 PF00365 Phosphofructokinase BEQ56_10770 PF00271 Helicase conserved C-terminal domain BEQ56_10770 PF04851 Type III restriction enzyme, res subunit BEQ56_10770 PF17757 UvrB interaction domain BEQ56_10770 PF12344 Ultra-violet resistance protein B BEQ56_10770 PF02151 UvrB/uvrC motif BEQ56_10780 PF13735 tRNA nucleotidyltransferase domain 2 putative BEQ56_10780 PF01743 Poly A polymerase head domain BEQ56_10780 PF12627 Probable RNA and SrmB- binding site of polymerase A BEQ56_10785 PF00830 Ribosomal L28 family BEQ56_10790 PF00756 Putative esterase BEQ56_10790 PF03629 Carbohydrate esterase, sialic acid-specific acetylesterase BEQ56_10795 PF01687 Riboflavin kinase BEQ56_10795 PF06574 FAD synthetase BEQ56_10800 PF09142 tRNA Pseudouridine synthase II, C terminal BEQ56_10800 PF16198 tRNA pseudouridylate synthase B C-terminal domain BEQ56_10800 PF01509 TruB family pseudouridylate synthase (N terminal domain) BEQ56_10810 PF02033 Ribosome-binding factor A BEQ56_10815 PF04760 Translation initiation factor IF-2, N-terminal region BEQ56_10815 PF11987 Translation-initiation factor 2 BEQ56_10815 PF00009 Elongation factor Tu GTP binding domain BEQ56_10825 PF00575 S1 RNA binding domain BEQ56_10825 PF13184 NusA-like KH domain BEQ56_10825 PF08529 NusA N-terminal domain BEQ56_10830 PF02381 MraZ protein, putative antitoxin-like BEQ56_10835 PF01795 MraW methylase family BEQ56_10845 PF03717 Penicillin-binding Protein dimerisation domain BEQ56_10845 PF00905 Penicillin binding protein transpeptidase domain BEQ56_10845 PF03793 PASTA domain BEQ56_10850 PF02875 Mur ligase family, glutamate ligase domain BEQ56_10850 PF08245 Mur ligase middle domain BEQ56_10850 PF01225 Mur ligase family, catalytic domain BEQ56_10855 PF00953 Glycosyl transferase family 4 BEQ56_10860 PF02875 Mur ligase family, glutamate ligase domain BEQ56_10860 PF08245 Mur ligase middle domain BEQ56_10865 PF04101 Glycosyltransferase family 28 C-terminal domain BEQ56_10865 PF03033 Glycosyltransferase family 28 N-terminal domain BEQ56_10870 PF02875 Mur ligase family, glutamate ligase domain BEQ56_10870 PF08245 Mur ligase middle domain BEQ56_10870 PF01225 Mur ligase family, catalytic domain BEQ56_10880 PF02491 SHS2 domain inserted in FTSA BEQ56_10885 PF00091 Tubulin/FtsZ family, GTPase domain BEQ56_10885 PF12327 FtsZ family, C-terminal domain BEQ56_10935 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_10940 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_10945 PF00005 ABC transporter BEQ56_10950 PF05221 S-adenosyl-L-homocysteine hydrolase BEQ56_10950 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain BEQ56_10955 PF00701 Dihydrodipicolinate synthetase family BEQ56_10960 PF01113 Dihydrodipicolinate reductase, N-terminus BEQ56_10960 PF05173 Dihydrodipicolinate reductase, C-terminus BEQ56_10965 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain BEQ56_10965 PF01113 Dihydrodipicolinate reductase, N-terminus BEQ56_10970 PF13840 ACT domain BEQ56_10970 PF00696 Amino acid kinase family BEQ56_10975 PF03180 NLPA lipoprotein BEQ56_10980 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_10985 PF00005 ABC transporter BEQ56_10985 PF09383 NIL domain BEQ56_11000 PF00902 Sec-independent protein translocase protein (TatC) BEQ56_11010 PF04029 2-phosphosulpholactate phosphatase BEQ56_11020 PF00232 Glycosyl hydrolase family 1 BEQ56_11045 PF13416 Bacterial extracellular solute-binding protein BEQ56_11055 PF00005 ABC transporter BEQ56_11055 PF17912 MalK OB fold domain BEQ56_11060 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_11065 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_11075 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_11080 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_11090 PF00356 Bacterial regulatory proteins, lacI family BEQ56_11100 PF02056 Family 4 glycosyl hydrolase BEQ56_11100 PF11975 Family 4 glycosyl hydrolase C-terminal domain BEQ56_11105 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) BEQ56_11105 PF00294 pfkB family carbohydrate kinase BEQ56_11130 PF02348 Cytidylyltransferase BEQ56_11135 PF00534 Glycosyl transferases group 1 BEQ56_11140 PF08666 SAF domain BEQ56_11140 PF03102 NeuB family BEQ56_11145 PF04321 RmlD substrate binding domain BEQ56_11150 PF02719 Polysaccharide biosynthesis protein BEQ56_11165 PF14524 Wzt C-terminal domain BEQ56_11165 PF00005 ABC transporter BEQ56_11170 PF01061 ABC-2 type transporter BEQ56_11175 PF01370 NAD dependent epimerase/dehydratase family BEQ56_11180 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BEQ56_11185 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_11195 PF01979 Amidohydrolase family BEQ56_11200 PF00701 Dihydrodipicolinate synthetase family BEQ56_11205 PF01614 Bacterial transcriptional regulator BEQ56_11205 PF09339 IclR helix-turn-helix domain BEQ56_11210 PF00588 SpoU rRNA Methylase family BEQ56_11210 PF08032 RNA 2'-O ribose methyltransferase substrate binding BEQ56_11215 PF09190 DALR domain BEQ56_11215 PF01406 tRNA synthetases class I (C) catalytic domain BEQ56_11220 PF09334 tRNA synthetases class I (M) BEQ56_11220 PF08264 Anticodon-binding domain of tRNA BEQ56_11225 PF07690 Major Facilitator Superfamily BEQ56_11230 PF01594 AI-2E family transporter BEQ56_11235 PF01551 Peptidase family M23 BEQ56_11235 PF10145 Phage-related minor tail protein BEQ56_11235 PF01464 Transglycosylase SLT domain BEQ56_11240 PF01078 Magnesium chelatase, subunit ChlI BEQ56_11240 PF17863 AAA lid domain BEQ56_11245 PF17863 AAA lid domain BEQ56_11245 PF01078 Magnesium chelatase, subunit ChlI BEQ56_11245 PF13519 von Willebrand factor type A domain BEQ56_11285 PF12002 MgsA AAA+ ATPase C terminal BEQ56_11285 PF16193 AAA C-terminal domain BEQ56_11285 PF00004 ATPase family associated with various cellular activities (AAA) BEQ56_11290 PF00248 Aldo/keto reductase family BEQ56_11295 PF00149 Calcineurin-like phosphoesterase BEQ56_11295 PF02872 5'-nucleotidase, C-terminal domain BEQ56_11300 PF01039 Carboxyl transferase domain BEQ56_11310 PF01370 NAD dependent epimerase/dehydratase family BEQ56_11330 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_11335 PF00005 ABC transporter BEQ56_11335 PF17912 MalK OB fold domain BEQ56_11335 PF03459 TOBE domain BEQ56_11340 PF01116 Fructose-bisphosphate aldolase class-II BEQ56_11350 PF00764 Arginosuccinate synthase BEQ56_11355 PF14698 Argininosuccinate lyase C-terminal BEQ56_11355 PF00206 Lyase BEQ56_11365 PF12072 Domain of unknown function (DUF3552) BEQ56_11365 PF01966 HD domain BEQ56_11365 PF00013 KH domain BEQ56_11370 PF02631 RecX family BEQ56_11390 PF03949 Malic enzyme, NAD binding domain BEQ56_11390 PF01515 Phosphate acetyl/butaryl transferase BEQ56_11390 PF00390 Malic enzyme, N-terminal domain BEQ56_11430 PF13520 Amino acid permease BEQ56_11445 PF12706 Beta-lactamase superfamily domain BEQ56_11450 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system BEQ56_11460 PF01554 MatE BEQ56_11480 PF00497 Bacterial extracellular solute-binding proteins, family 3 BEQ56_11485 PF00497 Bacterial extracellular solute-binding proteins, family 3 BEQ56_11495 PF00005 ABC transporter BEQ56_11500 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_11515 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BEQ56_11515 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BEQ56_11520 PF00069 Protein kinase domain BEQ56_11520 PF03793 PASTA domain BEQ56_11525 PF03952 Enolase, N-terminal domain BEQ56_11525 PF00113 Enolase, C-terminal TIM barrel domain BEQ56_11545 PF02522 Aminoglycoside 3-N-acetyltransferase BEQ56_11555 PF18319 PriA DNA helicase Cys-rich region (CRR) domain BEQ56_11555 PF18074 Primosomal protein N C-terminal domain BEQ56_11555 PF00271 Helicase conserved C-terminal domain BEQ56_11555 PF17764 3′ DNA-binding domain (3′BD) BEQ56_11555 PF04851 Type III restriction enzyme, res subunit BEQ56_11610 PF00301 Rubredoxin BEQ56_11615 PF02915 Rubrerythrin BEQ56_11630 PF01546 Peptidase family M20/M25/M40 BEQ56_11640 PF00842 Alanine racemase, C-terminal domain BEQ56_11640 PF01168 Alanine racemase, N-terminal domain BEQ56_11645 PF10141 Single-strand DNA-specific exonuclease, C terminal domain BEQ56_11645 PF17768 RecJ OB domain BEQ56_11645 PF02272 DHHA1 domain BEQ56_11645 PF01368 DHH family BEQ56_11680 PF07690 Major Facilitator Superfamily BEQ56_11695 PF00294 pfkB family carbohydrate kinase BEQ56_11700 PF01380 SIS domain BEQ56_11710 PF08402 TOBE domain BEQ56_11710 PF00005 ABC transporter BEQ56_11720 PF00072 Response regulator receiver domain BEQ56_11720 PF12833 Helix-turn-helix domain BEQ56_11725 PF06580 Histidine kinase BEQ56_11725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEQ56_11735 PF03315 Serine dehydratase beta chain BEQ56_11735 PF03313 Serine dehydratase alpha chain BEQ56_11740 PF01725 Ham1 family BEQ56_11745 PF13419 Haloacid dehalogenase-like hydrolase BEQ56_11760 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_11765 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_11820 PF07702 UTRA domain BEQ56_11820 PF00392 Bacterial regulatory proteins, gntR family BEQ56_11825 PF00294 pfkB family carbohydrate kinase BEQ56_11830 PF01116 Fructose-bisphosphate aldolase class-II BEQ56_11835 PF13407 Periplasmic binding protein domain BEQ56_11840 PF00005 ABC transporter BEQ56_11850 PF00248 Aldo/keto reductase family BEQ56_11860 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BEQ56_11860 PF14579 Helix-hairpin-helix motif BEQ56_11860 PF02811 PHP domain BEQ56_11860 PF01336 OB-fold nucleic acid binding domain BEQ56_11860 PF07733 Bacterial DNA polymerase III alpha NTPase domain BEQ56_11875 PF00072 Response regulator receiver domain BEQ56_11875 PF04397 LytTr DNA-binding domain BEQ56_11895 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BEQ56_11900 PF01979 Amidohydrolase family BEQ56_11905 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain BEQ56_11905 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain BEQ56_11910 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BEQ56_11910 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BEQ56_11955 PF00005 ABC transporter BEQ56_11960 PF09084 NMT1/THI5 like BEQ56_11965 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_11975 PF00005 ABC transporter BEQ56_11990 PF03129 Anticodon binding domain BEQ56_11990 PF09180 Prolyl-tRNA synthetase, C-terminal BEQ56_11990 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BEQ56_12010 PF17785 PUA-like domain BEQ56_12010 PF10672 S-adenosylmethionine-dependent methyltransferase BEQ56_12030 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BEQ56_12030 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BEQ56_12030 PF06827 Zinc finger found in FPG and IleRS BEQ56_12035 PF14572 Phosphoribosyl synthetase-associated domain BEQ56_12035 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BEQ56_12060 PF00756 Putative esterase BEQ56_12085 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BEQ56_12085 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BEQ56_12085 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BEQ56_12085 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BEQ56_12095 PF02769 AIR synthase related protein, C-terminal domain BEQ56_12095 PF00586 AIR synthase related protein, N-terminal domain BEQ56_12115 PF00712 DNA polymerase III beta subunit, N-terminal domain BEQ56_12115 PF02768 DNA polymerase III beta subunit, C-terminal domain BEQ56_12115 PF02767 DNA polymerase III beta subunit, central domain BEQ56_12130 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BEQ56_12130 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain BEQ56_12135 PF10369 Small subunit of acetolactate synthase BEQ56_12135 PF01842 ACT domain BEQ56_12140 PF00205 Thiamine pyrophosphate enzyme, central domain BEQ56_12140 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BEQ56_12140 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BEQ56_12145 PF00440 Bacterial regulatory proteins, tetR family BEQ56_12150 PF04954 Siderophore-interacting protein BEQ56_12150 PF08021 Siderophore-interacting FAD-binding domain BEQ56_12150 PF00005 ABC transporter BEQ56_12150 PF00664 ABC transporter transmembrane region BEQ56_12155 PF00664 ABC transporter transmembrane region BEQ56_12155 PF00005 ABC transporter BEQ56_12175 PF08360 QacR-like protein, C-terminal region BEQ56_12175 PF00440 Bacterial regulatory proteins, tetR family BEQ56_12185 PF00106 short chain dehydrogenase BEQ56_12200 PF00005 ABC transporter BEQ56_12215 PF00248 Aldo/keto reductase family BEQ56_12220 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BEQ56_12220 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BEQ56_12230 PF00535 Glycosyl transferase family 2 BEQ56_12235 PF00403 Heavy-metal-associated domain BEQ56_12240 PF01022 Bacterial regulatory protein, arsR family BEQ56_12245 PF03780 Asp23 family, cell envelope-related function BEQ56_12250 PF02734 DAK2 domain BEQ56_12250 PF13684 Dihydroxyacetone kinase family BEQ56_12260 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BEQ56_12260 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BEQ56_12265 PF00392 Bacterial regulatory proteins, gntR family BEQ56_12265 PF07702 UTRA domain BEQ56_12275 PF00291 Pyridoxal-phosphate dependent enzyme BEQ56_12280 PF00535 Glycosyl transferase family 2 BEQ56_12290 PF03459 TOBE domain BEQ56_12290 PF00005 ABC transporter BEQ56_12290 PF17912 MalK OB fold domain BEQ56_12295 PF08402 TOBE domain BEQ56_12295 PF00005 ABC transporter BEQ56_12300 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_12305 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_12315 PF01156 Inosine-uridine preferring nucleoside hydrolase BEQ56_12320 PF12833 Helix-turn-helix domain BEQ56_12325 PF13545 Crp-like helix-turn-helix domain BEQ56_12325 PF00027 Cyclic nucleotide-binding domain BEQ56_12345 PF03591 AzlC protein BEQ56_12350 PF05437 Branched-chain amino acid transport protein (AzlD) BEQ56_12355 PF00589 Phage integrase family BEQ56_12355 PF02899 Phage integrase, N-terminal SAM-like domain BEQ56_12360 PF01171 PP-loop family BEQ56_12360 PF11734 TilS substrate C-terminal domain BEQ56_12365 PF02645 Uncharacterised protein, DegV family COG1307 BEQ56_12370 PF08676 MutL C terminal dimerisation domain BEQ56_12370 PF01119 DNA mismatch repair protein, C-terminal domain BEQ56_12380 PF00380 Ribosomal protein S9/S16 BEQ56_12385 PF00572 Ribosomal protein L13 BEQ56_12390 PF01416 tRNA pseudouridine synthase BEQ56_12395 PF01196 Ribosomal protein L17 BEQ56_12400 PF01000 RNA polymerase Rpb3/RpoA insert domain BEQ56_12400 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain BEQ56_12400 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain BEQ56_12405 PF01479 S4 domain BEQ56_12405 PF00163 Ribosomal protein S4/S9 N-terminal domain BEQ56_12410 PF00411 Ribosomal protein S11 BEQ56_12415 PF00416 Ribosomal protein S13/S18 BEQ56_12420 PF00557 Metallopeptidase family M24 BEQ56_12425 PF05191 Adenylate kinase, active site lid BEQ56_12430 PF00344 SecY translocase BEQ56_12435 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A BEQ56_12440 PF00327 Ribosomal protein L30p/L7e BEQ56_12445 PF00333 Ribosomal protein S5, N-terminal domain BEQ56_12445 PF03719 Ribosomal protein S5, C-terminal domain BEQ56_12450 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast BEQ56_12455 PF00347 Ribosomal protein L6 BEQ56_12460 PF00410 Ribosomal protein S8 BEQ56_12465 PF00253 Ribosomal protein S14p/S29e BEQ56_12470 PF00673 ribosomal L5P family C-terminus BEQ56_12470 PF00281 Ribosomal protein L5 BEQ56_12475 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 BEQ56_12475 PF00467 KOW motif BEQ56_12480 PF00238 Ribosomal protein L14p/L23e BEQ56_12485 PF00366 Ribosomal protein S17 BEQ56_12490 PF00831 Ribosomal L29 protein BEQ56_12495 PF00252 Ribosomal protein L16p/L10e BEQ56_12500 PF07650 KH domain BEQ56_12500 PF00189 Ribosomal protein S3, C-terminal domain BEQ56_12505 PF00237 Ribosomal protein L22p/L17e BEQ56_12510 PF00203 Ribosomal protein S19 BEQ56_12515 PF03947 Ribosomal Proteins L2, C-terminal domain BEQ56_12515 PF00181 Ribosomal Proteins L2, RNA binding domain BEQ56_12520 PF00276 Ribosomal protein L23 BEQ56_12525 PF00573 Ribosomal protein L4/L1 family BEQ56_12530 PF00297 Ribosomal protein L3 BEQ56_12545 PF04389 Peptidase family M28 BEQ56_12555 PF02308 MgtC family BEQ56_12585 PF00133 tRNA synthetases class I (I, L, M and V) BEQ56_12585 PF08264 Anticodon-binding domain of tRNA BEQ56_12590 PF02601 Exonuclease VII, large subunit BEQ56_12590 PF13742 OB-fold nucleic acid binding domain BEQ56_12595 PF02609 Exonuclease VII small subunit BEQ56_12615 PF17101 Stealth protein CR1, conserved region 1 BEQ56_12615 PF11380 Stealth protein CR2, conserved region 2 BEQ56_12615 PF00534 Glycosyl transferases group 1 BEQ56_12615 PF17102 Stealth protein CR3, conserved region 3 BEQ56_12615 PF17103 Stealth protein CR4, conserved region 4 BEQ56_12635 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BEQ56_12650 PF00075 RNase H BEQ56_12665 PF10509 Galactokinase galactose-binding signature BEQ56_12665 PF08544 GHMP kinases C terminal BEQ56_12665 PF00288 GHMP kinases N terminal domain BEQ56_12670 PF00012 Hsp70 protein BEQ56_12705 PF00301 Rubredoxin BEQ56_12705 PF00753 Metallo-beta-lactamase superfamily BEQ56_12705 PF00258 Flavodoxin BEQ56_12715 PF10576 Iron-sulfur binding domain of endonuclease III BEQ56_12715 PF00633 Helix-hairpin-helix motif BEQ56_12715 PF00730 HhH-GPD superfamily base excision DNA repair protein BEQ56_12720 PF00753 Metallo-beta-lactamase superfamily BEQ56_12720 PF16123 Hydroxyacylglutathione hydrolase C-terminus BEQ56_12755 PF13173 AAA domain BEQ56_12755 PF13635 Domain of unknown function (DUF4143) BEQ56_12775 PF00535 Glycosyl transferase family 2 BEQ56_12790 PF00535 Glycosyl transferase family 2 BEQ56_12800 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BEQ56_12800 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BEQ56_12805 PF00005 ABC transporter BEQ56_12835 PF08666 SAF domain BEQ56_12835 PF03102 NeuB family BEQ56_12855 PF01156 Inosine-uridine preferring nucleoside hydrolase BEQ56_12860 PF01048 Phosphorylase superfamily BEQ56_12880 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_12885 PF00528 Binding-protein-dependent transport system inner membrane component BEQ56_12900 PF01380 SIS domain BEQ56_12905 PF07702 UTRA domain BEQ56_12905 PF00392 Bacterial regulatory proteins, gntR family BEQ56_12910 PF01467 Cytidylyltransferase-like BEQ56_12915 PF01926 50S ribosome-binding GTPase BEQ56_12915 PF01018 GTP1/OBG BEQ56_12915 PF09269 Domain of unknown function (DUF1967) BEQ56_12935 PF01370 NAD dependent epimerase/dehydratase family BEQ56_12950 PF04079 Segregation and condensation complex subunit ScpB BEQ56_12955 PF00849 RNA pseudouridylate synthase BEQ56_12955 PF01479 S4 domain BEQ56_12965 PF00005 ABC transporter BEQ56_12975 PF01597 Glycine cleavage H-protein BEQ56_12980 PF02347 Glycine cleavage system P-protein BEQ56_12985 PF02347 Glycine cleavage system P-protein BEQ56_12990 PF02789 Cytosol aminopeptidase family, N-terminal domain BEQ56_12990 PF00883 Cytosol aminopeptidase family, catalytic domain BEQ56_13010 PF02616 Segregation and condensation protein ScpA BEQ56_13020 PF13749 Putative ATP-dependent DNA helicase recG C-terminal BEQ56_13020 PF00270 DEAD/DEAH box helicase BEQ56_13020 PF17191 RecG wedge domain BEQ56_13035 PF03009 Glycerophosphoryl diester phosphodiesterase family BEQ56_13045 PF00535 Glycosyl transferase family 2 BEQ56_13050 PF09370 Phosphoenolpyruvate hydrolase-like BEQ56_13060 PF09370 Phosphoenolpyruvate hydrolase-like BEQ56_13065 PF03129 Anticodon binding domain BEQ56_13065 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BEQ56_13070 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family