locus-tag class description AMPC_00010 PF00106 short chain dehydrogenase AMPC_00050 PF01625 Peptide methionine sulfoxide reductase AMPC_00100 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain AMPC_00100 PF01464 Transglycosylase SLT domain AMPC_00120 PF00561 alpha/beta hydrolase fold AMPC_00130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_00130 PF08447 PAS fold AMPC_00130 PF08448 PAS fold AMPC_00150 PF06745 KaiC AMPC_00160 PF01627 Hpt domain AMPC_00160 PF00512 His Kinase A (phospho-acceptor) domain AMPC_00160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_00160 PF00072 Response regulator receiver domain AMPC_00160 PF00989 PAS fold AMPC_00160 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMPC_00210 PF02872 5'-nucleotidase, C-terminal domain AMPC_00210 PF00149 Calcineurin-like phosphoesterase AMPC_00240 PF00072 Response regulator receiver domain AMPC_00240 PF00196 Bacterial regulatory proteins, luxR family AMPC_00260 PF01783 Ribosomal L32p protein family AMPC_00270 PF02504 Fatty acid synthesis protein AMPC_00280 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMPC_00280 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMPC_00290 PF00698 Acyl transferase domain AMPC_00310 PF00550 Phosphopantetheine attachment site AMPC_00320 PF00109 Beta-ketoacyl synthase, N-terminal domain AMPC_00320 PF02801 Beta-ketoacyl synthase, C-terminal domain AMPC_00330 PF07715 TonB-dependent Receptor Plug Domain AMPC_00330 PF00593 TonB dependent receptor AMPC_00350 PF00672 HAMP domain AMPC_00350 PF02203 Tar ligand binding domain homologue AMPC_00350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMPC_00360 PF02502 Ribose/Galactose Isomerase AMPC_00370 PF00464 Serine hydroxymethyltransferase AMPC_00380 PF03477 ATP cone domain AMPC_00390 PF01872 RibD C-terminal domain AMPC_00390 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMPC_00400 PF00677 Lumazine binding domain AMPC_00410 PF00925 GTP cyclohydrolase II AMPC_00410 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AMPC_00420 PF00885 6,7-dimethyl-8-ribityllumazine synthase AMPC_00430 PF01029 NusB family AMPC_00450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_00450 PF02895 Signal transducing histidine kinase, homodimeric domain AMPC_00450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_00450 PF01627 Hpt domain AMPC_00450 PF02895 Signal transducing histidine kinase, homodimeric domain AMPC_00450 PF01584 CheW-like domain AMPC_00450 PF00072 Response regulator receiver domain AMPC_00450 PF01584 CheW-like domain AMPC_00450 PF00072 Response regulator receiver domain AMPC_00450 PF01627 Hpt domain AMPC_00460 PF01471 Putative peptidoglycan binding domain AMPC_00460 PF13401 AAA domain AMPC_00470 PF01584 CheW-like domain AMPC_00480 PF01584 CheW-like domain AMPC_00500 PF03705 CheR methyltransferase, all-alpha domain AMPC_00500 PF01739 CheR methyltransferase, SAM binding domain AMPC_00510 PF00072 Response regulator receiver domain AMPC_00510 PF01339 CheB methylesterase AMPC_00520 PF00072 Response regulator receiver domain AMPC_00530 PF03372 Endonuclease/Exonuclease/phosphatase family AMPC_00550 PF00072 Response regulator receiver domain AMPC_00550 PF01966 HD domain AMPC_00560 PF07497 Rho termination factor, RNA-binding domain AMPC_00560 PF07498 Rho termination factor, N-terminal domain AMPC_00560 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMPC_00570 PF01343 Peptidase family S49 AMPC_00580 PF02511 Thymidylate synthase complementing protein AMPC_00590 PF03061 Thioesterase superfamily AMPC_00600 PF01431 Peptidase family M13 AMPC_00600 PF05649 Peptidase family M13 AMPC_00660 PF10518 TAT (twin-arginine translocation) pathway signal sequence AMPC_00660 PF00149 Calcineurin-like phosphoesterase AMPC_00670 PF01381 Helix-turn-helix AMPC_00690 PF00578 AhpC/TSA family AMPC_00790 PF16363 GDP-mannose 4,6 dehydratase AMPC_00800 PF13193 AMP-binding enzyme C-terminal domain AMPC_00800 PF00501 AMP-binding enzyme AMPC_00810 PF09861 Lactate racemase N-terminal domain AMPC_00830 PF16363 GDP-mannose 4,6 dehydratase AMPC_00850 PF01810 LysE type translocator AMPC_00860 PF01568 Molydopterin dinucleotide binding domain AMPC_00860 PF00384 Molybdopterin oxidoreductase AMPC_00860 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMPC_00870 PF06434 Aconitate hydratase 2 N-terminus AMPC_00870 PF00330 Aconitase family (aconitate hydratase) AMPC_00870 PF11791 Aconitate B N-terminal domain AMPC_00900 PF00676 Dehydrogenase E1 component AMPC_00920 PF02780 Transketolase, C-terminal domain AMPC_00920 PF02779 Transketolase, pyrimidine binding domain AMPC_00930 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMPC_00930 PF00364 Biotin-requiring enzyme AMPC_00930 PF02817 e3 binding domain AMPC_00940 PF10415 Fumarase C C-terminus AMPC_00940 PF00206 Lyase AMPC_01110 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AMPC_01110 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMPC_01120 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMPC_01150 PF00486 Transcriptional regulatory protein, C terminal AMPC_01150 PF00072 Response regulator receiver domain AMPC_01150 PF01627 Hpt domain AMPC_01170 PF01966 HD domain AMPC_01170 PF13286 Phosphohydrolase-associated domain AMPC_01180 PF00072 Response regulator receiver domain AMPC_01200 PF00012 Hsp70 protein AMPC_01210 PF00226 DnaJ domain AMPC_01210 PF01556 DnaJ C terminal domain AMPC_01210 PF00684 DnaJ central domain AMPC_01230 PF00857 Isochorismatase family AMPC_01240 PF00491 Arginase family AMPC_01250 PF01916 Deoxyhypusine synthase AMPC_01260 PF02811 PHP domain AMPC_01270 PF02082 Transcriptional regulator AMPC_01280 PF00361 Proton-conducting membrane transporter AMPC_01290 PF00361 Proton-conducting membrane transporter AMPC_01290 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus AMPC_01300 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AMPC_01300 PF00361 Proton-conducting membrane transporter AMPC_01300 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus AMPC_01310 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AMPC_01320 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AMPC_01330 PF12838 4Fe-4S dicluster domain AMPC_01340 PF00146 NADH dehydrogenase AMPC_01350 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AMPC_01360 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AMPC_01370 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AMPC_01380 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AMPC_01390 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AMPC_01400 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AMPC_01410 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AMPC_01420 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AMPC_01430 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMPC_01430 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal AMPC_01430 PF00384 Molybdopterin oxidoreductase AMPC_01440 PF00146 NADH dehydrogenase AMPC_01450 PF00037 4Fe-4S binding domain AMPC_01480 PF00583 Acetyltransferase (GNAT) family AMPC_01490 PF01553 Acyltransferase AMPC_01500 PF00491 Arginase family AMPC_01520 PF01546 Peptidase family M20/M25/M40 AMPC_01520 PF07687 Peptidase dimerisation domain AMPC_01550 PF07690 Major Facilitator Superfamily AMPC_01560 PF14791 DNA polymerase beta thumb AMPC_01560 PF14716 Helix-hairpin-helix domain AMPC_01560 PF02811 PHP domain AMPC_01570 PF00994 Probable molybdopterin binding domain AMPC_01610 PF01258 Prokaryotic dksA/traR C4-type zinc finger AMPC_01620 PF02913 FAD linked oxidases, C-terminal domain AMPC_01620 PF01565 FAD binding domain AMPC_01630 PF02754 Cysteine-rich domain AMPC_01640 PF02589 LUD domain AMPC_01640 PF13183 4Fe-4S dicluster domain AMPC_01640 PF11870 Domain of unknown function (DUF3390) AMPC_01660 PF04607 Region found in RelA / SpoT proteins AMPC_01660 PF13291 ACT domain AMPC_01660 PF02824 TGS domain AMPC_01670 PF01042 Endoribonuclease L-PSP AMPC_01680 PF12544 Lysine-2,3-aminomutase AMPC_01690 PF12544 Lysine-2,3-aminomutase AMPC_01690 PF04055 Radical SAM superfamily AMPC_01700 PF09335 SNARE associated Golgi protein AMPC_01710 PF08486 Stage II sporulation protein AMPC_01720 PF02547 Queuosine biosynthesis protein AMPC_01730 PF01702 Queuine tRNA-ribosyltransferase AMPC_01740 PF02699 Preprotein translocase subunit AMPC_01750 PF07549 SecD/SecF GG Motif AMPC_01750 PF02355 Protein export membrane protein AMPC_01760 PF02355 Protein export membrane protein AMPC_01760 PF07549 SecD/SecF GG Motif AMPC_01770 PF00107 Zinc-binding dehydrogenase AMPC_01770 PF08240 Alcohol dehydrogenase GroES-like domain AMPC_01800 PF12704 MacB-like periplasmic core domain AMPC_01800 PF02687 FtsX-like permease family AMPC_01810 PF00005 ABC transporter AMPC_01810 PF12704 MacB-like periplasmic core domain AMPC_01810 PF02687 FtsX-like permease family AMPC_01830 PF01368 DHH family AMPC_01830 PF17768 RecJ OB domain AMPC_01830 PF02272 DHHA1 domain AMPC_01850 PF02938 GAD domain AMPC_01850 PF00152 tRNA synthetases class II (D, K and N) AMPC_01850 PF01336 OB-fold nucleic acid binding domain AMPC_01860 PF00535 Glycosyl transferase family 2 AMPC_01860 PF13181 Tetratricopeptide repeat AMPC_01870 PF00535 Glycosyl transferase family 2 AMPC_01870 PF13181 Tetratricopeptide repeat AMPC_01880 PF00535 Glycosyl transferase family 2 AMPC_01880 PF13181 Tetratricopeptide repeat AMPC_01890 PF01266 FAD dependent oxidoreductase AMPC_01890 PF04324 BFD-like [2Fe-2S] binding domain AMPC_01900 PF00890 FAD binding domain AMPC_01910 PF00535 Glycosyl transferase family 2 AMPC_01920 PF00534 Glycosyl transferases group 1 AMPC_01920 PF00535 Glycosyl transferase family 2 AMPC_01930 PF00534 Glycosyl transferases group 1 AMPC_01940 PF01370 NAD dependent epimerase/dehydratase family AMPC_01950 PF00483 Nucleotidyl transferase AMPC_01970 PF13439 Glycosyltransferase Family 4 AMPC_01970 PF00534 Glycosyl transferases group 1 AMPC_01980 PF00535 Glycosyl transferase family 2 AMPC_01990 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMPC_02030 PF13193 AMP-binding enzyme C-terminal domain AMPC_02030 PF00501 AMP-binding enzyme AMPC_02070 PF01648 4'-phosphopantetheinyl transferase superfamily AMPC_02090 PF00781 Diacylglycerol kinase catalytic domain AMPC_02110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_02110 PF00512 His Kinase A (phospho-acceptor) domain AMPC_02120 PF00271 Helicase conserved C-terminal domain AMPC_02120 PF00176 SNF2 family N-terminal domain AMPC_02140 PF05690 Thiazole biosynthesis protein ThiG AMPC_02160 PF02581 Thiamine monophosphate synthase AMPC_02210 PF12705 PD-(D/E)XK nuclease superfamily AMPC_02210 PF13361 UvrD-like helicase C-terminal domain AMPC_02210 PF00580 UvrD/REP helicase N-terminal domain AMPC_02230 PF01791 DeoC/LacD family aldolase AMPC_02240 PF00132 Bacterial transferase hexapeptide (six repeats) AMPC_02320 PF01168 Alanine racemase, N-terminal domain AMPC_02330 PF02545 Maf-like protein AMPC_02340 PF05698 Bacterial trigger factor protein (TF) C-terminus AMPC_02370 PF03793 PASTA domain AMPC_02370 PF03717 Penicillin-binding Protein dimerisation domain AMPC_02370 PF00905 Penicillin binding protein transpeptidase domain AMPC_02380 PF01098 Cell cycle protein AMPC_02390 PF00085 Thioredoxin AMPC_02400 PF01578 Cytochrome C assembly protein AMPC_02410 PF01488 Shikimate / quinate 5-dehydrogenase AMPC_02410 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AMPC_02410 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AMPC_02420 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AMPC_02420 PF03900 Porphobilinogen deaminase, C-terminal domain AMPC_02450 PF01142 tRNA pseudouridine synthase D (TruD) AMPC_02520 PF03807 NADP oxidoreductase coenzyme F420-dependent AMPC_02520 PF14748 Pyrroline-5-carboxylate reductase dimerisation AMPC_02530 PF01266 FAD dependent oxidoreductase AMPC_02540 PF01571 Aminomethyltransferase folate-binding domain AMPC_02540 PF17806 Sarcosine oxidase A3 domain AMPC_02540 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMPC_02540 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMPC_02550 PF01676 Metalloenzyme superfamily AMPC_02570 PF01523 Putative modulator of DNA gyrase AMPC_02580 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMPC_02580 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMPC_02580 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMPC_02590 PF07940 Heparinase II/III-like protein AMPC_02590 PF16889 Heparinase II/III N-terminus AMPC_02610 PF08308 PEGA domain AMPC_02610 PF00069 Protein kinase domain AMPC_02630 PF03979 Sigma-70 factor, region 1.1 AMPC_02630 PF04542 Sigma-70 region 2 AMPC_02630 PF04539 Sigma-70 region 3 AMPC_02630 PF04545 Sigma-70, region 4 AMPC_02630 PF00140 Sigma-70 factor, region 1.2 AMPC_02640 PF01808 AICARFT/IMPCHase bienzyme AMPC_02640 PF02142 MGS-like domain AMPC_02650 PF00072 Response regulator receiver domain AMPC_02650 PF00486 Transcriptional regulatory protein, C terminal AMPC_02660 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AMPC_02660 PF02843 Phosphoribosylglycinamide synthetase, C domain AMPC_02660 PF02844 Phosphoribosylglycinamide synthetase, N domain AMPC_02670 PF00731 AIR carboxylase AMPC_02720 PF00535 Glycosyl transferase family 2 AMPC_02740 PF16363 GDP-mannose 4,6 dehydratase AMPC_02750 PF01370 NAD dependent epimerase/dehydratase family AMPC_02770 PF13439 Glycosyltransferase Family 4 AMPC_02780 PF00483 Nucleotidyl transferase AMPC_02800 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMPC_02800 PF00205 Thiamine pyrophosphate enzyme, central domain AMPC_02800 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMPC_02820 PF07836 DmpG-like communication domain AMPC_02820 PF00682 HMGL-like AMPC_02830 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation AMPC_02830 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMPC_02840 PF16363 GDP-mannose 4,6 dehydratase AMPC_02850 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMPC_02860 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMPC_02860 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMPC_02860 PF00205 Thiamine pyrophosphate enzyme, central domain AMPC_02870 PF00535 Glycosyl transferase family 2 AMPC_02880 PF00535 Glycosyl transferase family 2 AMPC_02880 PF00534 Glycosyl transferases group 1 AMPC_02920 PF13580 SIS domain AMPC_02940 PF00483 Nucleotidyl transferase AMPC_02950 PF08544 GHMP kinases C terminal AMPC_02950 PF00288 GHMP kinases N terminal domain AMPC_02970 PF08241 Methyltransferase domain AMPC_02980 PF00483 Nucleotidyl transferase AMPC_03000 PF16363 GDP-mannose 4,6 dehydratase AMPC_03010 PF04321 RmlD substrate binding domain AMPC_03020 PF01061 ABC-2 type transporter AMPC_03030 PF00005 ABC transporter AMPC_03050 PF02397 Bacterial sugar transferase AMPC_03060 PF01300 Telomere recombination AMPC_03080 PF00490 Delta-aminolevulinic acid dehydratase AMPC_03110 PF01820 D-ala D-ala ligase N-terminus AMPC_03110 PF07478 D-ala D-ala ligase C-terminus AMPC_03120 PF03576 Peptidase family S58 AMPC_03160 PF04362 Bacterial Fe(2+) trafficking AMPC_03190 PF00994 Probable molybdopterin binding domain AMPC_03190 PF03454 MoeA C-terminal region (domain IV) AMPC_03190 PF03453 MoeA N-terminal region (domain I and II) AMPC_03200 PF00575 S1 RNA binding domain AMPC_03200 PF17876 Cold shock domain AMPC_03200 PF08206 Ribonuclease B OB domain AMPC_03200 PF00773 RNB domain AMPC_03220 PF00691 OmpA family AMPC_03220 PF00223 Photosystem I psaA/psaB protein AMPC_03230 PF01925 Sulfite exporter TauE/SafE AMPC_03250 PF00005 ABC transporter AMPC_03260 PF00005 ABC transporter AMPC_03260 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMPC_03280 PF02653 Branched-chain amino acid transport system / permease component AMPC_03300 PF00488 MutS domain V AMPC_03300 PF01713 Smr domain AMPC_03310 PF00375 Sodium:dicarboxylate symporter family AMPC_03330 PF13439 Glycosyltransferase Family 4 AMPC_03350 PF07075 Protein of unknown function (DUF1343) AMPC_03360 PF01467 Cytidylyltransferase-like AMPC_03380 PF10431 C-terminal, D2-small domain, of ClpB protein AMPC_03380 PF02861 Clp amino terminal domain, pathogenicity island component AMPC_03380 PF17871 AAA lid domain AMPC_03380 PF00004 ATPase family associated with various cellular activities (AAA) AMPC_03380 PF07724 AAA domain (Cdc48 subfamily) AMPC_03400 PF00118 TCP-1/cpn60 chaperonin family AMPC_03420 PF00440 Bacterial regulatory proteins, tetR family AMPC_03430 PF00990 Diguanylate cyclase, GGDEF domain AMPC_03450 PF00072 Response regulator receiver domain AMPC_03450 PF00486 Transcriptional regulatory protein, C terminal AMPC_03460 PF10458 Valyl tRNA synthetase tRNA binding arm AMPC_03460 PF00133 tRNA synthetases class I (I, L, M and V) AMPC_03460 PF08264 Anticodon-binding domain of tRNA AMPC_03470 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AMPC_03470 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AMPC_03480 PF03099 Biotin/lipoate A/B protein ligase family AMPC_03480 PF02237 Biotin protein ligase C terminal domain AMPC_03480 PF08279 HTH domain AMPC_03490 PF03309 Type III pantothenate kinase AMPC_03520 PF03023 Lipid II flippase MurJ AMPC_03560 PF00486 Transcriptional regulatory protein, C terminal AMPC_03560 PF00072 Response regulator receiver domain AMPC_03580 PF04542 Sigma-70 region 2 AMPC_03580 PF08281 Sigma-70, region 4 AMPC_03600 PF10672 S-adenosylmethionine-dependent methyltransferase AMPC_03600 PF17785 PUA-like domain AMPC_03620 PF04127 DNA / pantothenate metabolism flavoprotein AMPC_03620 PF02441 Flavoprotein AMPC_03640 PF03167 Uracil DNA glycosylase superfamily AMPC_03660 PF16200 C-terminal region of band_7 AMPC_03660 PF01145 SPFH domain / Band 7 family AMPC_03670 PF01112 Asparaginase AMPC_03680 PF02803 Thiolase, C-terminal domain AMPC_03680 PF00108 Thiolase, N-terminal domain AMPC_03690 PF01144 Coenzyme A transferase AMPC_03700 PF01144 Coenzyme A transferase AMPC_03730 PF01938 TRAM domain AMPC_03730 PF05958 tRNA (Uracil-5-)-methyltransferase AMPC_03750 PF00005 ABC transporter AMPC_03770 PF01938 TRAM domain AMPC_03770 PF00919 Uncharacterized protein family UPF0004 AMPC_03770 PF04055 Radical SAM superfamily AMPC_03780 PF00132 Bacterial transferase hexapeptide (six repeats) AMPC_03790 PF00027 Cyclic nucleotide-binding domain AMPC_03790 PF13545 Crp-like helix-turn-helix domain AMPC_03800 PF09335 SNARE associated Golgi protein AMPC_03810 PF00012 Hsp70 protein AMPC_03820 PF00478 IMP dehydrogenase / GMP reductase domain AMPC_03820 PF00571 CBS domain AMPC_03830 PF00958 GMP synthase C terminal domain AMPC_03830 PF00117 Glutamine amidotransferase class-I AMPC_03860 PF00501 AMP-binding enzyme AMPC_03870 PF00072 Response regulator receiver domain AMPC_03890 PF02515 CoA-transferase family III AMPC_03930 PF00005 ABC transporter AMPC_03940 PF00950 ABC 3 transport family AMPC_03970 PF03458 UPF0126 domain AMPC_03980 PF01546 Peptidase family M20/M25/M40 AMPC_03980 PF07687 Peptidase dimerisation domain AMPC_04010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_04010 PF00512 His Kinase A (phospho-acceptor) domain AMPC_04050 PF02417 Chromate transporter AMPC_04090 PF00512 His Kinase A (phospho-acceptor) domain AMPC_04090 PF08448 PAS fold AMPC_04090 PF13188 PAS domain AMPC_04090 PF00072 Response regulator receiver domain AMPC_04090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_04110 PF00072 Response regulator receiver domain AMPC_04110 PF00158 Sigma-54 interaction domain AMPC_04110 PF02954 Bacterial regulatory protein, Fis family AMPC_04130 PF02272 DHHA1 domain AMPC_04130 PF01411 tRNA synthetases class II (A) AMPC_04130 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMPC_04150 PF01370 NAD dependent epimerase/dehydratase family AMPC_04170 PF01925 Sulfite exporter TauE/SafE AMPC_04180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_04180 PF08448 PAS fold AMPC_04180 PF08447 PAS fold AMPC_04190 PF03971 Monomeric isocitrate dehydrogenase AMPC_04200 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AMPC_04200 PF00056 lactate/malate dehydrogenase, NAD binding domain AMPC_04210 PF00571 CBS domain AMPC_04210 PF00478 IMP dehydrogenase / GMP reductase domain AMPC_04240 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMPC_04240 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMPC_04240 PF01842 ACT domain AMPC_04250 PF00764 Arginosuccinate synthase AMPC_04280 PF00873 AcrB/AcrD/AcrF family AMPC_04290 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMPC_04310 PF00107 Zinc-binding dehydrogenase AMPC_04310 PF13823 Alcohol dehydrogenase GroES-associated AMPC_04310 PF08240 Alcohol dehydrogenase GroES-like domain AMPC_04340 PF04172 LrgB-like family AMPC_04350 PF03788 LrgA family AMPC_04360 PF03466 LysR substrate binding domain AMPC_04360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMPC_04380 PF01212 Beta-eliminating lyase AMPC_04400 PF00672 HAMP domain AMPC_04400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMPC_04400 PF02203 Tar ligand binding domain homologue AMPC_04410 PF12849 PBP superfamily domain AMPC_04420 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AMPC_04420 PF07733 Bacterial DNA polymerase III alpha NTPase domain AMPC_04420 PF14579 Helix-hairpin-helix motif AMPC_04420 PF02811 PHP domain AMPC_04430 PF01578 Cytochrome C assembly protein AMPC_04450 PF00313 'Cold-shock' DNA-binding domain AMPC_04460 PF03449 Transcription elongation factor, N-terminal AMPC_04460 PF01272 Transcription elongation factor, GreA/GreB, C-term AMPC_04480 PF13722 5TM C-terminal transporter carbon starvation CstA AMPC_04480 PF02554 Carbon starvation protein CstA AMPC_04490 PF05681 Fumarate hydratase (Fumerase) AMPC_04490 PF05683 Fumarase C-terminus AMPC_04500 PF04216 Protein involved in formate dehydrogenase formation AMPC_04510 PF09163 Formate dehydrogenase N, transmembrane AMPC_04510 PF13247 4Fe-4S dicluster domain AMPC_04510 PF12800 4Fe-4S binding domain AMPC_04540 PF00753 Metallo-beta-lactamase superfamily AMPC_04540 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AMPC_04540 PF10996 Beta-Casp domain AMPC_04550 PF07690 Major Facilitator Superfamily AMPC_04560 PF02222 ATP-grasp domain AMPC_04610 PF16177 Acetyl-coenzyme A synthetase N-terminus AMPC_04610 PF00501 AMP-binding enzyme AMPC_04610 PF13193 AMP-binding enzyme C-terminal domain AMPC_04650 PF00005 ABC transporter AMPC_04660 PF02687 FtsX-like permease family AMPC_04660 PF12704 MacB-like periplasmic core domain AMPC_04680 PF01425 Amidase AMPC_04690 PF02203 Tar ligand binding domain homologue AMPC_04690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMPC_04690 PF00672 HAMP domain AMPC_04700 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMPC_04700 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMPC_04700 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMPC_04700 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMPC_04750 PF00462 Glutaredoxin AMPC_04810 PF05140 ResB-like family AMPC_04810 PF01578 Cytochrome C assembly protein AMPC_04830 PF00551 Formyl transferase AMPC_04830 PF01842 ACT domain AMPC_04840 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMPC_04850 PF01730 UreF AMPC_04860 PF01979 Amidohydrolase family AMPC_04860 PF00449 Urease alpha-subunit, N-terminal domain AMPC_04870 PF00699 Urease beta subunit AMPC_04870 PF00547 Urease, gamma subunit AMPC_04880 PF01774 UreD urease accessory protein AMPC_04890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_04890 PF13426 PAS domain AMPC_04890 PF00512 His Kinase A (phospho-acceptor) domain AMPC_04890 PF00989 PAS fold AMPC_04890 PF13188 PAS domain AMPC_04910 PF00072 Response regulator receiver domain AMPC_04910 PF02954 Bacterial regulatory protein, Fis family AMPC_04910 PF00158 Sigma-54 interaction domain AMPC_04930 PF13247 4Fe-4S dicluster domain AMPC_04940 PF03916 Polysulphide reductase, NrfD AMPC_04950 PF01597 Glycine cleavage H-protein AMPC_04970 PF01597 Glycine cleavage H-protein AMPC_05000 PF01435 Peptidase family M48 AMPC_05020 PF05384 Sensor protein DegS AMPC_05020 PF07730 Histidine kinase AMPC_05020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_05030 PF00196 Bacterial regulatory proteins, luxR family AMPC_05030 PF00072 Response regulator receiver domain AMPC_05120 PF05140 ResB-like family AMPC_05120 PF01578 Cytochrome C assembly protein AMPC_05140 PF02310 B12 binding domain AMPC_05140 PF04055 Radical SAM superfamily AMPC_05290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_05290 PF00512 His Kinase A (phospho-acceptor) domain AMPC_05300 PF00072 Response regulator receiver domain AMPC_05300 PF02954 Bacterial regulatory protein, Fis family AMPC_05300 PF00158 Sigma-54 interaction domain AMPC_05320 PF04545 Sigma-70, region 4 AMPC_05320 PF00140 Sigma-70 factor, region 1.2 AMPC_05320 PF04542 Sigma-70 region 2 AMPC_05340 PF00072 Response regulator receiver domain AMPC_05340 PF00486 Transcriptional regulatory protein, C terminal AMPC_05350 PF00297 Ribosomal protein L3 AMPC_05370 PF00009 Elongation factor Tu GTP binding domain AMPC_05370 PF00679 Elongation factor G C-terminus AMPC_05370 PF03144 Elongation factor Tu domain 2 AMPC_05390 PF16123 Hydroxyacylglutathione hydrolase C-terminus AMPC_05390 PF00753 Metallo-beta-lactamase superfamily AMPC_05400 PF01066 CDP-alcohol phosphatidyltransferase AMPC_05420 PF16363 GDP-mannose 4,6 dehydratase AMPC_05430 PF01370 NAD dependent epimerase/dehydratase family AMPC_05440 PF16363 GDP-mannose 4,6 dehydratase AMPC_05470 PF04055 Radical SAM superfamily AMPC_05470 PF13186 Iron-sulfur cluster-binding domain AMPC_05490 PF01979 Amidohydrolase family AMPC_05530 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMPC_05530 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMPC_05530 PF03129 Anticodon binding domain AMPC_05530 PF02824 TGS domain AMPC_05540 PF08502 LeuA allosteric (dimerisation) domain AMPC_05540 PF00682 HMGL-like AMPC_05550 PF00330 Aconitase family (aconitate hydratase) AMPC_05560 PF00694 Aconitase C-terminal domain AMPC_05570 PF00180 Isocitrate/isopropylmalate dehydrogenase AMPC_05580 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMPC_05580 PF00205 Thiamine pyrophosphate enzyme, central domain AMPC_05580 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMPC_05590 PF01842 ACT domain AMPC_05590 PF10369 Small subunit of acetolactate synthase AMPC_05600 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AMPC_05600 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AMPC_05610 PF00707 Translation initiation factor IF-3, C-terminal domain AMPC_05610 PF05198 Translation initiation factor IF-3, N-terminal domain AMPC_05620 PF01632 Ribosomal protein L35 AMPC_05630 PF00453 Ribosomal protein L20 AMPC_05640 PF01409 tRNA synthetases class II core domain (F) AMPC_05640 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AMPC_05650 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AMPC_05650 PF01588 Putative tRNA binding domain AMPC_05650 PF03147 Ferredoxin-fold anticodon binding domain AMPC_05650 PF03484 tRNA synthetase B5 domain AMPC_05650 PF03483 B3/4 domain AMPC_05670 PF00216 Bacterial DNA-binding protein AMPC_05680 PF02954 Bacterial regulatory protein, Fis family AMPC_05680 PF00072 Response regulator receiver domain AMPC_05680 PF00158 Sigma-54 interaction domain AMPC_05690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_05720 PF01227 GTP cyclohydrolase I AMPC_05740 PF02913 FAD linked oxidases, C-terminal domain AMPC_05740 PF01565 FAD binding domain AMPC_05760 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMPC_05770 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AMPC_05770 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AMPC_05770 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AMPC_05790 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AMPC_05790 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AMPC_05790 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AMPC_05800 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMPC_05830 PF16363 GDP-mannose 4,6 dehydratase AMPC_05840 PF16363 GDP-mannose 4,6 dehydratase AMPC_05900 PF00005 ABC transporter AMPC_05900 PF00664 ABC transporter transmembrane region AMPC_05920 PF13439 Glycosyltransferase Family 4 AMPC_05920 PF00534 Glycosyl transferases group 1 AMPC_05930 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMPC_05930 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMPC_05940 PF08240 Alcohol dehydrogenase GroES-like domain AMPC_05940 PF00107 Zinc-binding dehydrogenase AMPC_05950 PF16363 GDP-mannose 4,6 dehydratase AMPC_05960 PF01370 NAD dependent epimerase/dehydratase family AMPC_05990 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMPC_05990 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMPC_05990 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMPC_06020 PF00912 Transglycosylase AMPC_06030 PF07690 Major Facilitator Superfamily AMPC_06050 PF14815 NUDIX domain AMPC_06050 PF00730 HhH-GPD superfamily base excision DNA repair protein AMPC_06050 PF00633 Helix-hairpin-helix motif AMPC_06060 PF00164 Ribosomal protein S12/S23 AMPC_06070 PF00177 Ribosomal protein S7p/S5e AMPC_06080 PF03144 Elongation factor Tu domain 2 AMPC_06080 PF00009 Elongation factor Tu GTP binding domain AMPC_06080 PF03764 Elongation factor G, domain IV AMPC_06080 PF00679 Elongation factor G C-terminus AMPC_06080 PF14492 Elongation Factor G, domain II AMPC_06090 PF00009 Elongation factor Tu GTP binding domain AMPC_06090 PF03144 Elongation factor Tu domain 2 AMPC_06090 PF03143 Elongation factor Tu C-terminal domain AMPC_06100 PF00338 Ribosomal protein S10p/S20e AMPC_06110 PF00573 Ribosomal protein L4/L1 family AMPC_06120 PF00276 Ribosomal protein L23 AMPC_06130 PF03947 Ribosomal Proteins L2, C-terminal domain AMPC_06130 PF00181 Ribosomal Proteins L2, RNA binding domain AMPC_06140 PF00203 Ribosomal protein S19 AMPC_06150 PF00237 Ribosomal protein L22p/L17e AMPC_06160 PF07650 KH domain AMPC_06160 PF00189 Ribosomal protein S3, C-terminal domain AMPC_06170 PF00252 Ribosomal protein L16p/L10e AMPC_06180 PF00831 Ribosomal L29 protein AMPC_06190 PF00366 Ribosomal protein S17 AMPC_06200 PF00238 Ribosomal protein L14p/L23e AMPC_06210 PF00467 KOW motif AMPC_06210 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AMPC_06220 PF00673 ribosomal L5P family C-terminus AMPC_06220 PF00281 Ribosomal protein L5 AMPC_06230 PF00253 Ribosomal protein S14p/S29e AMPC_06240 PF00410 Ribosomal protein S8 AMPC_06250 PF00347 Ribosomal protein L6 AMPC_06260 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AMPC_06270 PF00333 Ribosomal protein S5, N-terminal domain AMPC_06270 PF03719 Ribosomal protein S5, C-terminal domain AMPC_06280 PF00327 Ribosomal protein L30p/L7e AMPC_06290 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AMPC_06300 PF00344 SecY translocase AMPC_06310 PF05191 Adenylate kinase, active site lid AMPC_06320 PF00557 Metallopeptidase family M24 AMPC_06330 PF00444 Ribosomal protein L36 AMPC_06340 PF00416 Ribosomal protein S13/S18 AMPC_06350 PF00411 Ribosomal protein S11 AMPC_06360 PF00163 Ribosomal protein S4/S9 N-terminal domain AMPC_06360 PF01479 S4 domain AMPC_06370 PF01000 RNA polymerase Rpb3/RpoA insert domain AMPC_06370 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AMPC_06370 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AMPC_06380 PF01196 Ribosomal protein L17 AMPC_06390 PF01569 PAP2 superfamily AMPC_06400 PF00886 Ribosomal protein S16 AMPC_06420 PF05239 PRC-barrel domain AMPC_06420 PF01782 RimM N-terminal domain AMPC_06430 PF01746 tRNA (Guanine-1)-methyltransferase AMPC_06440 PF01245 Ribosomal protein L19 AMPC_06460 PF02021 Uncharacterised protein family UPF0102 AMPC_06470 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMPC_06480 PF02954 Bacterial regulatory protein, Fis family AMPC_06480 PF00072 Response regulator receiver domain AMPC_06480 PF00158 Sigma-54 interaction domain AMPC_06490 PF00989 PAS fold AMPC_06490 PF00512 His Kinase A (phospho-acceptor) domain AMPC_06490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_06540 PF00849 RNA pseudouridylate synthase AMPC_06540 PF01479 S4 domain AMPC_06550 PF01209 ubiE/COQ5 methyltransferase family AMPC_06560 PF00005 ABC transporter AMPC_06570 PF17944 Arginine decarboxylase C-terminal helical extension AMPC_06570 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMPC_06570 PF17810 Arginine decarboxylase helical bundle domain AMPC_06610 PF00577 Outer membrane usher protein AMPC_06610 PF13953 PapC C-terminal domain AMPC_06610 PF13954 PapC N-terminal domain AMPC_06660 PF01741 Large-conductance mechanosensitive channel, MscL AMPC_06670 PF07311 Dodecin AMPC_06680 PF00860 Permease family AMPC_06770 PF00849 RNA pseudouridylate synthase AMPC_06790 PF00842 Alanine racemase, C-terminal domain AMPC_06790 PF01168 Alanine racemase, N-terminal domain AMPC_06800 PF02405 Permease MlaE AMPC_06810 PF00005 ABC transporter AMPC_06830 PF02687 FtsX-like permease family AMPC_06830 PF12704 MacB-like periplasmic core domain AMPC_06830 PF00005 ABC transporter AMPC_06840 PF12704 MacB-like periplasmic core domain AMPC_06840 PF00005 ABC transporter AMPC_06840 PF02687 FtsX-like permease family AMPC_06860 PF00578 AhpC/TSA family AMPC_06870 PF03884 DNA gyrase inhibitor YacG AMPC_06890 PF02310 B12 binding domain AMPC_06890 PF01642 Methylmalonyl-CoA mutase AMPC_06900 PF01642 Methylmalonyl-CoA mutase AMPC_06900 PF02310 B12 binding domain AMPC_06910 PF00682 HMGL-like AMPC_06920 PF00378 Enoyl-CoA hydratase/isomerase AMPC_06930 PF01039 Carboxyl transferase domain AMPC_06940 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMPC_06940 PF02770 Acyl-CoA dehydrogenase, middle domain AMPC_06940 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMPC_06970 PF00035 Double-stranded RNA binding motif AMPC_06970 PF14622 Ribonuclease-III-like AMPC_06980 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMPC_06990 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMPC_07000 PF01926 50S ribosome-binding GTPase AMPC_07000 PF07650 KH domain AMPC_07010 PF01926 50S ribosome-binding GTPase AMPC_07010 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AMPC_07090 PF00106 short chain dehydrogenase AMPC_07340 PF13411 MerR HTH family regulatory protein AMPC_07350 PF02770 Acyl-CoA dehydrogenase, middle domain AMPC_07350 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMPC_07350 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMPC_07360 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMPC_07360 PF02770 Acyl-CoA dehydrogenase, middle domain AMPC_07360 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMPC_07370 PF00378 Enoyl-CoA hydratase/isomerase AMPC_07380 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMPC_07380 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMPC_07410 PF10609 NUBPL iron-transfer P-loop NTPase AMPC_07410 PF01883 Iron-sulfur cluster assembly protein AMPC_07420 PF01137 RNA 3'-terminal phosphate cyclase AMPC_07420 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain AMPC_07460 PF00263 Bacterial type II and III secretion system protein AMPC_07460 PF11741 AMIN domain AMPC_07460 PF03958 Bacterial type II/III secretion system short domain AMPC_07470 PF01479 S4 domain AMPC_07470 PF00849 RNA pseudouridylate synthase AMPC_07480 PF04079 Segregation and condensation complex subunit ScpB AMPC_07490 PF02616 Segregation and condensation protein ScpA AMPC_07500 PF00579 tRNA synthetases class I (W and Y) AMPC_07510 PF02163 Peptidase family M50 AMPC_07520 PF02899 Phage integrase, N-terminal SAM-like domain AMPC_07520 PF00589 Phage integrase family AMPC_07530 PF01300 Telomere recombination AMPC_07560 PF08443 RimK-like ATP-grasp domain AMPC_07560 PF18030 RimK PreATP-grasp domain AMPC_07570 PF08335 GlnD PII-uridylyltransferase AMPC_07570 PF01966 HD domain AMPC_07570 PF01909 Nucleotidyltransferase domain AMPC_07580 PF01520 N-acetylmuramoyl-L-alanine amidase AMPC_07580 PF11741 AMIN domain AMPC_07600 PF05188 MutS domain II AMPC_07600 PF00488 MutS domain V AMPC_07600 PF05190 MutS family domain IV AMPC_07600 PF01624 MutS domain I AMPC_07600 PF05192 MutS domain III AMPC_07610 PF03109 ABC1 family AMPC_07620 PF00717 Peptidase S24-like AMPC_07620 PF01726 LexA DNA binding domain AMPC_07650 PF02190 ATP-dependent protease La (LON) substrate-binding domain AMPC_07650 PF05362 Lon protease (S16) C-terminal proteolytic domain AMPC_07650 PF00004 ATPase family associated with various cellular activities (AAA) AMPC_07670 PF00069 Protein kinase domain AMPC_07670 PF03793 PASTA domain AMPC_07690 PF01590 GAF domain AMPC_07690 PF00158 Sigma-54 interaction domain AMPC_07730 PF01119 DNA mismatch repair protein, C-terminal domain AMPC_07730 PF08676 MutL C terminal dimerisation domain AMPC_07740 PF01553 Acyltransferase AMPC_07750 PF00342 Phosphoglucose isomerase AMPC_07800 PF02464 Competence-damaged protein AMPC_07800 PF18146 Damage-inducible protein CinA KH domain AMPC_07800 PF00994 Probable molybdopterin binding domain AMPC_07810 PF02223 Thymidylate kinase AMPC_07830 PF00291 Pyridoxal-phosphate dependent enzyme AMPC_07860 PF17191 RecG wedge domain AMPC_07860 PF00270 DEAD/DEAH box helicase AMPC_07860 PF00271 Helicase conserved C-terminal domain AMPC_07870 PF03449 Transcription elongation factor, N-terminal AMPC_07870 PF01272 Transcription elongation factor, GreA/GreB, C-term AMPC_07880 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMPC_07880 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AMPC_07880 PF02142 MGS-like domain AMPC_07890 PF00155 Aminotransferase class I and II AMPC_07900 PF01467 Cytidylyltransferase-like AMPC_07920 PF01545 Cation efflux family AMPC_07930 PF00561 alpha/beta hydrolase fold AMPC_07960 PF06965 Na+/H+ antiporter 1 AMPC_07960 PF13462 Thioredoxin AMPC_08000 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMPC_08000 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AMPC_08010 PF13180 PDZ domain AMPC_08020 PF01025 GrpE AMPC_08040 PF00004 ATPase family associated with various cellular activities (AAA) AMPC_08040 PF17862 AAA+ lid domain AMPC_08040 PF06480 FtsH Extracellular AMPC_08040 PF01434 Peptidase family M41 AMPC_08050 PF00293 NUDIX domain AMPC_08060 PF02607 B12 binding domain AMPC_08060 PF02574 Homocysteine S-methyltransferase AMPC_08060 PF00809 Pterin binding enzyme AMPC_08060 PF02310 B12 binding domain AMPC_08060 PF02965 Vitamin B12 dependent methionine synthase, activation domain AMPC_08070 PF01842 ACT domain AMPC_08070 PF00800 Prephenate dehydratase AMPC_08100 PF00012 Hsp70 protein AMPC_08110 PF00580 UvrD/REP helicase N-terminal domain AMPC_08110 PF13361 UvrD-like helicase C-terminal domain AMPC_08170 PF13840 ACT domain AMPC_08170 PF00696 Amino acid kinase family AMPC_08180 PF00293 NUDIX domain AMPC_08180 PF03099 Biotin/lipoate A/B protein ligase family AMPC_08190 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMPC_08190 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMPC_08200 PF00676 Dehydrogenase E1 component AMPC_08200 PF12573 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal AMPC_08210 PF02817 e3 binding domain AMPC_08210 PF00364 Biotin-requiring enzyme AMPC_08210 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMPC_08220 PF02779 Transketolase, pyrimidine binding domain AMPC_08220 PF02780 Transketolase, C-terminal domain AMPC_08230 PF00676 Dehydrogenase E1 component AMPC_08240 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AMPC_08240 PF04055 Radical SAM superfamily AMPC_08250 PF01966 HD domain AMPC_08250 PF00072 Response regulator receiver domain AMPC_08270 PF01964 Radical SAM ThiC family AMPC_08280 PF00113 Enolase, C-terminal TIM barrel domain AMPC_08280 PF03952 Enolase, N-terminal domain AMPC_08290 PF00106 short chain dehydrogenase AMPC_08320 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AMPC_08340 PF00742 Homoserine dehydrogenase AMPC_08340 PF01842 ACT domain AMPC_08340 PF03447 Homoserine dehydrogenase, NAD binding domain AMPC_08400 PF04055 Radical SAM superfamily AMPC_08410 PF01595 Cyclin M transmembrane N-terminal domain AMPC_08410 PF03471 Transporter associated domain AMPC_08410 PF00571 CBS domain AMPC_08420 PF00334 Nucleoside diphosphate kinase AMPC_08430 PF02629 CoA binding domain AMPC_08430 PF00549 CoA-ligase AMPC_08440 PF08442 ATP-grasp domain AMPC_08440 PF00549 CoA-ligase AMPC_08450 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AMPC_08450 PF00056 lactate/malate dehydrogenase, NAD binding domain AMPC_08460 PF00180 Isocitrate/isopropylmalate dehydrogenase AMPC_08480 PF00989 PAS fold AMPC_08480 PF00512 His Kinase A (phospho-acceptor) domain AMPC_08480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_08500 PF00117 Glutamine amidotransferase class-I AMPC_08500 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AMPC_08510 PF01979 Amidohydrolase family AMPC_08520 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMPC_08520 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMPC_08530 PF00156 Phosphoribosyl transferase domain AMPC_08550 PF10502 Signal peptidase, peptidase S26 AMPC_08560 PF00679 Elongation factor G C-terminus AMPC_08560 PF00009 Elongation factor Tu GTP binding domain AMPC_08560 PF03144 Elongation factor Tu domain 2 AMPC_08560 PF06421 GTP-binding protein LepA C-terminus AMPC_08570 PF08471 Class II vitamin B12-dependent ribonucleotide reductase AMPC_08570 PF02867 Ribonucleotide reductase, barrel domain AMPC_08590 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AMPC_08590 PF02811 PHP domain AMPC_08590 PF14579 Helix-hairpin-helix motif AMPC_08590 PF07733 Bacterial DNA polymerase III alpha NTPase domain AMPC_08610 PF00154 recA bacterial DNA recombination protein AMPC_08630 PF00085 Thioredoxin AMPC_08670 PF01464 Transglycosylase SLT domain AMPC_08690 PF01553 Acyltransferase AMPC_08720 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMPC_08720 PF18269 T3SS EscN ATPase C-terminal domain AMPC_08720 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMPC_08740 PF04539 Sigma-70 region 3 AMPC_08740 PF04542 Sigma-70 region 2 AMPC_08740 PF00140 Sigma-70 factor, region 1.2 AMPC_08740 PF04545 Sigma-70, region 4 AMPC_08750 PF04997 RNA polymerase Rpb1, domain 1 AMPC_08750 PF00623 RNA polymerase Rpb1, domain 2 AMPC_08750 PF04983 RNA polymerase Rpb1, domain 3 AMPC_08750 PF05000 RNA polymerase Rpb1, domain 4 AMPC_08750 PF04998 RNA polymerase Rpb1, domain 5 AMPC_08760 PF00562 RNA polymerase Rpb2, domain 6 AMPC_08760 PF04560 RNA polymerase Rpb2, domain 7 AMPC_08760 PF10385 RNA polymerase beta subunit external 1 domain AMPC_08760 PF04563 RNA polymerase beta subunit AMPC_08760 PF04561 RNA polymerase Rpb2, domain 2 AMPC_08760 PF04565 RNA polymerase Rpb2, domain 3 AMPC_08770 PF00542 Ribosomal protein L7/L12 C-terminal domain AMPC_08770 PF16320 Ribosomal protein L7/L12 dimerisation domain AMPC_08780 PF00466 Ribosomal protein L10 AMPC_08790 PF00687 Ribosomal protein L1p/L10e family AMPC_08800 PF00298 Ribosomal protein L11, RNA binding domain AMPC_08800 PF03946 Ribosomal protein L11, N-terminal domain AMPC_08810 PF00467 KOW motif AMPC_08810 PF02357 Transcription termination factor nusG AMPC_08830 PF00471 Ribosomal protein L33 AMPC_08840 PF03144 Elongation factor Tu domain 2 AMPC_08840 PF00009 Elongation factor Tu GTP binding domain AMPC_08840 PF03143 Elongation factor Tu C-terminal domain AMPC_08850 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMPC_08850 PF00588 SpoU rRNA Methylase family AMPC_08870 PF18030 RimK PreATP-grasp domain AMPC_08870 PF08443 RimK-like ATP-grasp domain AMPC_08880 PF00012 Hsp70 protein AMPC_08910 PF02562 PhoH-like protein AMPC_08910 PF13638 PIN domain AMPC_08920 PF00990 Diguanylate cyclase, GGDEF domain AMPC_08920 PF17158 Membrane-associated sensor, integral membrane domain AMPC_08980 PF07670 Nucleoside recognition AMPC_08980 PF02421 Ferrous iron transport protein B AMPC_08980 PF07664 Ferrous iron transport protein B C terminus AMPC_08980 PF17910 FeoB cytosolic helical domain AMPC_08990 PF01475 Ferric uptake regulator family AMPC_09030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_09030 PF00512 His Kinase A (phospho-acceptor) domain AMPC_09080 PF00072 Response regulator receiver domain AMPC_09080 PF00990 Diguanylate cyclase, GGDEF domain AMPC_09090 PF00158 Sigma-54 interaction domain AMPC_09090 PF00072 Response regulator receiver domain AMPC_09090 PF02954 Bacterial regulatory protein, Fis family AMPC_09110 PF09587 Bacterial capsule synthesis protein PGA_cap AMPC_09140 PF18509 Magnetochrome domain AMPC_09140 PF17820 PDZ domain AMPC_09150 PF00012 Hsp70 protein AMPC_09190 PF10431 C-terminal, D2-small domain, of ClpB protein AMPC_09190 PF06689 ClpX C4-type zinc finger AMPC_09190 PF07724 AAA domain (Cdc48 subfamily) AMPC_09210 PF01416 tRNA pseudouridine synthase AMPC_09250 PF01747 ATP-sulfurylase AMPC_09250 PF14306 PUA-like domain AMPC_09260 PF00899 ThiF family AMPC_09280 PF00899 ThiF family AMPC_09310 PF00012 Hsp70 protein AMPC_09330 PF00037 4Fe-4S binding domain AMPC_09330 PF11953 Domain of unknown function (DUF3470) AMPC_09360 PF00121 Triosephosphate isomerase AMPC_09370 PF00162 Phosphoglycerate kinase AMPC_09380 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMPC_09380 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AMPC_09430 PF05746 DALR anticodon binding domain AMPC_09430 PF00750 tRNA synthetases class I (R) AMPC_09430 PF03485 Arginyl tRNA synthetase N terminal domain AMPC_09450 PF01230 HIT domain AMPC_09460 PF01343 Peptidase family S49 AMPC_09470 PF00575 S1 RNA binding domain AMPC_09480 PF02401 LytB protein AMPC_09500 PF02224 Cytidylate kinase AMPC_09510 PF00155 Aminotransferase class I and II AMPC_09520 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AMPC_09540 PF13393 Histidyl-tRNA synthetase AMPC_09540 PF03129 Anticodon binding domain AMPC_09560 PF02666 Phosphatidylserine decarboxylase AMPC_09590 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AMPC_09600 PF01256 Carbohydrate kinase AMPC_09600 PF03853 YjeF-related protein N-terminus AMPC_09610 PF01648 4'-phosphopantetheinyl transferase superfamily AMPC_09620 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AMPC_09630 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMPC_09630 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMPC_09630 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMPC_09630 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMPC_09650 PF02457 DisA bacterial checkpoint controller nucleotide-binding AMPC_09660 PF00809 Pterin binding enzyme AMPC_09670 PF06480 FtsH Extracellular AMPC_09670 PF01434 Peptidase family M41 AMPC_09670 PF00004 ATPase family associated with various cellular activities (AAA) AMPC_09670 PF17862 AAA+ lid domain AMPC_09680 PF09179 TilS substrate binding domain AMPC_09680 PF01171 PP-loop family AMPC_09710 PF00313 'Cold-shock' DNA-binding domain AMPC_09720 PF00909 Ammonium Transporter Family AMPC_09750 PF00216 Bacterial DNA-binding protein AMPC_09760 PF05853 beta-keto acid cleavage enzyme AMPC_09770 PF03061 Thioesterase superfamily AMPC_09780 PF02310 B12 binding domain AMPC_09780 PF16554 Dimerisation domain of d-ornithine 4,5-aminomutase AMPC_09800 PF09043 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit AMPC_09810 PF00919 Uncharacterized protein family UPF0004 AMPC_09810 PF04055 Radical SAM superfamily AMPC_09830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_09830 PF00512 His Kinase A (phospho-acceptor) domain AMPC_09840 PF01743 Poly A polymerase head domain AMPC_09840 PF12627 Probable RNA and SrmB- binding site of polymerase A AMPC_09840 PF13735 tRNA nucleotidyltransferase domain 2 putative AMPC_09900 PF00072 Response regulator receiver domain AMPC_09900 PF00486 Transcriptional regulatory protein, C terminal AMPC_09980 PF03601 Conserved hypothetical protein 698 AMPC_10000 PF00899 ThiF family AMPC_10000 PF00581 Rhodanese-like domain AMPC_10020 PF00501 AMP-binding enzyme AMPC_10040 PF00072 Response regulator receiver domain AMPC_10040 PF00486 Transcriptional regulatory protein, C terminal AMPC_10070 PF13533 Biotin-lipoyl like AMPC_10080 PF00873 AcrB/AcrD/AcrF family AMPC_10090 PF00873 AcrB/AcrD/AcrF family AMPC_10110 PF00682 HMGL-like AMPC_10110 PF08502 LeuA allosteric (dimerisation) domain AMPC_10120 PF00005 ABC transporter AMPC_10120 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMPC_10130 PF00005 ABC transporter AMPC_10150 PF02653 Branched-chain amino acid transport system / permease component AMPC_10190 PF12800 4Fe-4S binding domain AMPC_10190 PF13247 4Fe-4S dicluster domain AMPC_10210 PF00248 Aldo/keto reductase family AMPC_10240 PF00873 AcrB/AcrD/AcrF family AMPC_10270 PF08534 Redoxin AMPC_10290 PF00999 Sodium/hydrogen exchanger family AMPC_10290 PF02254 TrkA-N domain AMPC_10310 PF03006 Haemolysin-III related AMPC_10320 PF05726 Pirin C-terminal cupin domain AMPC_10320 PF02678 Pirin AMPC_10330 PF00266 Aminotransferase class-V AMPC_10340 PF00271 Helicase conserved C-terminal domain AMPC_10340 PF00270 DEAD/DEAH box helicase AMPC_10340 PF03880 DbpA RNA binding domain AMPC_10360 PF00561 alpha/beta hydrolase fold AMPC_10370 PF00075 RNase H AMPC_10380 PF08240 Alcohol dehydrogenase GroES-like domain AMPC_10380 PF08990 Erythronolide synthase docking AMPC_10380 PF16197 Ketoacyl-synthetase C-terminal extension AMPC_10380 PF00109 Beta-ketoacyl synthase, N-terminal domain AMPC_10380 PF02801 Beta-ketoacyl synthase, C-terminal domain AMPC_10380 PF08659 KR domain AMPC_10380 PF00698 Acyl transferase domain AMPC_10380 PF14765 Polyketide synthase dehydratase AMPC_10380 PF00550 Phosphopantetheine attachment site AMPC_10390 PF00072 Response regulator receiver domain AMPC_10390 PF00486 Transcriptional regulatory protein, C terminal AMPC_10400 PF00654 Voltage gated chloride channel AMPC_10420 PF01433 Peptidase family M1 domain AMPC_10420 PF11838 ERAP1-like C-terminal domain AMPC_10430 PF13476 AAA domain AMPC_10440 PF12320 Type 5 capsule protein repressor C-terminal domain AMPC_10440 PF00149 Calcineurin-like phosphoesterase AMPC_10460 PF10017 Histidine-specific methyltransferase, SAM-dependent AMPC_10470 PF00069 Protein kinase domain AMPC_10470 PF03781 Sulfatase-modifying factor enzyme 1 AMPC_10500 PF00561 alpha/beta hydrolase fold AMPC_10510 PF01624 MutS domain I AMPC_10510 PF00488 MutS domain V AMPC_10510 PF05190 MutS family domain IV AMPC_10510 PF05192 MutS domain III AMPC_10510 PF05188 MutS domain II AMPC_10530 PF00586 AIR synthase related protein, N-terminal domain AMPC_10530 PF02769 AIR synthase related protein, C-terminal domain AMPC_10540 PF13580 SIS domain AMPC_10550 PF01924 Hydrogenase formation hypA family AMPC_10560 PF01455 HupF/HypC family AMPC_10570 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AMPC_10570 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal AMPC_10580 PF00374 Nickel-dependent hydrogenase AMPC_10630 PF01750 Hydrogenase maturation protease AMPC_10650 PF00557 Metallopeptidase family M24 AMPC_10700 PF01590 GAF domain AMPC_10700 PF02954 Bacterial regulatory protein, Fis family AMPC_10700 PF00158 Sigma-54 interaction domain AMPC_10710 PF00210 Ferritin-like domain AMPC_10730 PF00561 alpha/beta hydrolase fold AMPC_10740 PF00072 Response regulator receiver domain AMPC_10740 PF13188 PAS domain AMPC_10740 PF08448 PAS fold AMPC_10740 PF00512 His Kinase A (phospho-acceptor) domain AMPC_10740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_10750 PF06490 Flagellar regulatory protein FleQ AMPC_10750 PF02954 Bacterial regulatory protein, Fis family AMPC_10750 PF00158 Sigma-54 interaction domain AMPC_10770 PF00158 Sigma-54 interaction domain AMPC_10770 PF02954 Bacterial regulatory protein, Fis family AMPC_10780 PF00460 Flagella basal body rod protein AMPC_10790 PF00460 Flagella basal body rod protein AMPC_10790 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMPC_10800 PF02049 Flagellar hook-basal body complex protein FliE AMPC_10810 PF01514 Secretory protein of YscJ/FliF family AMPC_10810 PF08345 Flagellar M-ring protein C-terminal AMPC_10820 PF14841 FliG middle domain AMPC_10820 PF01706 FliG C-terminal domain AMPC_10820 PF14842 FliG N-terminal domain AMPC_10830 PF02108 Flagellar assembly protein FliH AMPC_10840 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMPC_10840 PF18269 T3SS EscN ATPase C-terminal domain AMPC_10870 PF13861 FlgD Tudor-like domain AMPC_10870 PF13860 FlgD Ig-like domain AMPC_10870 PF03963 Flagellar hook capping protein - N-terminal region AMPC_10880 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMPC_10880 PF00460 Flagella basal body rod protein AMPC_10880 PF07559 Flagellar basal body protein FlaE AMPC_10900 PF01618 MotA/TolQ/ExbB proton channel family AMPC_10910 PF00691 OmpA family AMPC_10910 PF13677 Membrane MotB of proton-channel complex MotA/MotB AMPC_10920 PF01584 CheW-like domain AMPC_10920 PF09078 CheY binding AMPC_10920 PF02895 Signal transducing histidine kinase, homodimeric domain AMPC_10920 PF01627 Hpt domain AMPC_10920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_10930 PF01584 CheW-like domain AMPC_10940 PF03975 CheD chemotactic sensory transduction AMPC_10960 PF00072 Response regulator receiver domain AMPC_10960 PF04397 LytTr DNA-binding domain AMPC_10980 PF00072 Response regulator receiver domain AMPC_10980 PF01339 CheB methylesterase AMPC_10990 PF01739 CheR methyltransferase, SAM binding domain AMPC_10990 PF03705 CheR methyltransferase, all-alpha domain AMPC_11010 PF00072 Response regulator receiver domain AMPC_11010 PF00486 Transcriptional regulatory protein, C terminal AMPC_11040 PF02154 Flagellar motor switch protein FliM AMPC_11040 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AMPC_11050 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AMPC_11070 PF00813 FliP family AMPC_11080 PF01313 Bacterial export proteins, family 3 AMPC_11090 PF01311 Bacterial export proteins, family 1 AMPC_11100 PF01312 FlhB HrpN YscU SpaS Family AMPC_11110 PF00771 FHIPEP family AMPC_11120 PF00448 SRP54-type protein, GTPase domain AMPC_11130 PF10609 NUBPL iron-transfer P-loop NTPase AMPC_11140 PF04545 Sigma-70, region 4 AMPC_11140 PF04539 Sigma-70 region 3 AMPC_11140 PF04542 Sigma-70 region 2 AMPC_11150 PF00535 Glycosyl transferase family 2 AMPC_11150 PF13181 Tetratricopeptide repeat AMPC_11170 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMPC_11170 PF00460 Flagella basal body rod protein AMPC_11180 PF00460 Flagella basal body rod protein AMPC_11180 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMPC_11200 PF02107 Flagellar L-ring protein AMPC_11210 PF02119 Flagellar P-ring protein AMPC_11250 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMPC_11250 PF00460 Flagella basal body rod protein AMPC_11260 PF00669 Bacterial flagellin N-terminal helical region AMPC_11280 PF00700 Bacterial flagellin C-terminal helical region AMPC_11280 PF00669 Bacterial flagellin N-terminal helical region AMPC_11290 PF07196 Flagellin hook IN motif AMPC_11290 PF07195 Flagellar hook-associated protein 2 C-terminus AMPC_11290 PF02465 Flagellar hook-associated protein 2 N-terminus AMPC_11340 PF03205 Molybdopterin guanine dinucleotide synthesis protein B AMPC_11350 PF00994 Probable molybdopterin binding domain AMPC_11350 PF03453 MoeA N-terminal region (domain I and II) AMPC_11350 PF03454 MoeA C-terminal region (domain IV) AMPC_11370 PF02416 mttA/Hcf106 family AMPC_11380 PF00478 IMP dehydrogenase / GMP reductase domain AMPC_11380 PF00571 CBS domain AMPC_11390 PF00582 Universal stress protein family AMPC_11400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_11410 PF00072 Response regulator receiver domain AMPC_11420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_11420 PF00989 PAS fold AMPC_11420 PF00512 His Kinase A (phospho-acceptor) domain AMPC_11430 PF00158 Sigma-54 interaction domain AMPC_11430 PF00072 Response regulator receiver domain AMPC_11430 PF02954 Bacterial regulatory protein, Fis family AMPC_11460 PF00571 CBS domain AMPC_11470 PF01966 HD domain AMPC_11470 PF01336 OB-fold nucleic acid binding domain AMPC_11490 PF01026 TatD related DNase AMPC_11500 PF09334 tRNA synthetases class I (M) AMPC_11500 PF01588 Putative tRNA binding domain AMPC_11520 PF09115 DNA polymerase III, delta subunit, C terminal AMPC_11530 PF09308 LuxQ, periplasmic AMPC_11530 PF00512 His Kinase A (phospho-acceptor) domain AMPC_11530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_11530 PF00072 Response regulator receiver domain AMPC_11550 PF01367 5'-3' exonuclease, C-terminal SAM fold AMPC_11550 PF01612 3'-5' exonuclease AMPC_11550 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AMPC_11550 PF00476 DNA polymerase family A AMPC_11580 PF02092 Glycyl-tRNA synthetase beta subunit AMPC_11580 PF05746 DALR anticodon binding domain AMPC_11590 PF02091 Glycyl-tRNA synthetase alpha subunit AMPC_11600 PF02565 Recombination protein O C terminal AMPC_11600 PF11967 Recombination protein O N terminal AMPC_11650 PF04055 Radical SAM superfamily AMPC_11660 PF01464 Transglycosylase SLT domain AMPC_11690 PF01180 Dihydroorotate dehydrogenase AMPC_11700 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AMPC_11700 PF00326 Prolyl oligopeptidase family AMPC_11710 PF00583 Acetyltransferase (GNAT) family AMPC_11710 PF00814 Glycoprotease family AMPC_11730 PF00226 DnaJ domain AMPC_11730 PF01556 DnaJ C terminal domain AMPC_11750 PF01553 Acyltransferase AMPC_11760 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain AMPC_11760 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain AMPC_11770 PF00459 Inositol monophosphatase family AMPC_11790 PF17862 AAA+ lid domain AMPC_11790 PF01434 Peptidase family M41 AMPC_11790 PF00004 ATPase family associated with various cellular activities (AAA) AMPC_11800 PF00437 Type II/IV secretion system protein AMPC_11800 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMPC_11820 PF00719 Inorganic pyrophosphatase AMPC_11850 PF00132 Bacterial transferase hexapeptide (six repeats) AMPC_11880 PF01618 MotA/TolQ/ExbB proton channel family AMPC_11890 PF13677 Membrane MotB of proton-channel complex MotA/MotB AMPC_11890 PF00691 OmpA family AMPC_11900 PF13677 Membrane MotB of proton-channel complex MotA/MotB AMPC_11900 PF00691 OmpA family AMPC_11910 PF12826 Helix-hairpin-helix motif AMPC_11910 PF02151 UvrB/uvrC motif AMPC_11910 PF01541 GIY-YIG catalytic domain AMPC_11910 PF08459 UvrC Helix-hairpin-helix N-terminal AMPC_11920 PF05922 Peptidase inhibitor I9 AMPC_11920 PF00082 Subtilase family AMPC_11940 PF17757 UvrB interaction domain AMPC_11940 PF12344 Ultra-violet resistance protein B AMPC_11940 PF04851 Type III restriction enzyme, res subunit AMPC_11940 PF00271 Helicase conserved C-terminal domain AMPC_11940 PF02151 UvrB/uvrC motif AMPC_11950 PF01406 tRNA synthetases class I (C) catalytic domain AMPC_11950 PF09190 DALR domain AMPC_11960 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AMPC_11960 PF02542 YgbB family AMPC_11970 PF02559 CarD-like/TRCF domain AMPC_11980 PF03772 Competence protein AMPC_11980 PF13567 Domain of unknown function (DUF4131) AMPC_11980 PF00753 Metallo-beta-lactamase superfamily AMPC_12010 PF00709 Adenylosuccinate synthetase AMPC_12020 PF13393 Histidyl-tRNA synthetase AMPC_12040 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMPC_12040 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMPC_12040 PF01842 ACT domain AMPC_12050 PF00266 Aminotransferase class-V AMPC_12060 PF00440 Bacterial regulatory proteins, tetR family AMPC_12060 PF08359 YsiA-like protein, C-terminal region AMPC_12100 PF02875 Mur ligase family, glutamate ligase domain AMPC_12100 PF08245 Mur ligase middle domain AMPC_12110 PF01039 Carboxyl transferase domain AMPC_12110 PF17848 Acetyl-coA carboxylase zinc finger domain AMPC_12120 PF12706 Beta-lactamase superfamily domain AMPC_12130 PF00027 Cyclic nucleotide-binding domain AMPC_12130 PF13545 Crp-like helix-turn-helix domain AMPC_12140 PF00586 AIR synthase related protein, N-terminal domain AMPC_12140 PF02769 AIR synthase related protein, C-terminal domain AMPC_12150 PF00551 Formyl transferase AMPC_12160 PF04463 Protein of unknown function (DUF523) AMPC_12180 PF00830 Ribosomal L28 family AMPC_12190 PF13580 SIS domain AMPC_12220 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AMPC_12220 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AMPC_12250 PF01571 Aminomethyltransferase folate-binding domain AMPC_12250 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMPC_12260 PF01597 Glycine cleavage H-protein AMPC_12270 PF02347 Glycine cleavage system P-protein AMPC_12280 PF02347 Glycine cleavage system P-protein AMPC_12310 PF00912 Transglycosylase AMPC_12330 PF01176 Translation initiation factor 1A / IF-1 AMPC_12340 PF00313 'Cold-shock' DNA-binding domain AMPC_12350 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AMPC_12380 PF03652 Holliday junction resolvase AMPC_12390 PF02618 YceG-like family AMPC_12400 PF08298 PrkA AAA domain AMPC_12400 PF06798 PrkA serine protein kinase C-terminal domain AMPC_12410 PF04285 Protein of unknown function (DUF444) AMPC_12420 PF04293 SpoVR like protein AMPC_12430 PF01551 Peptidase family M23 AMPC_12430 PF04225 Opacity-associated protein A LysM-like domain AMPC_12440 PF00270 DEAD/DEAH box helicase AMPC_12440 PF00271 Helicase conserved C-terminal domain AMPC_12450 PF04545 Sigma-70, region 4 AMPC_12450 PF04539 Sigma-70 region 3 AMPC_12450 PF04542 Sigma-70 region 2 AMPC_12450 PF00140 Sigma-70 factor, region 1.2 AMPC_12470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMPC_12510 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMPC_12550 PF13369 Transglutaminase-like superfamily AMPC_12560 PF00990 Diguanylate cyclase, GGDEF domain AMPC_12560 PF00072 Response regulator receiver domain AMPC_12570 PF01595 Cyclin M transmembrane N-terminal domain AMPC_12570 PF03471 Transporter associated domain AMPC_12570 PF00571 CBS domain AMPC_12580 PF01566 Natural resistance-associated macrophage protein AMPC_12590 PF03099 Biotin/lipoate A/B protein ligase family AMPC_12590 PF00293 NUDIX domain AMPC_12610 PF01048 Phosphorylase superfamily AMPC_12620 PF00625 Guanylate kinase AMPC_12630 PF08340 Domain of unknown function (DUF1732) AMPC_12630 PF03755 YicC-like family, N-terminal region AMPC_12640 PF03966 Trm112p-like protein AMPC_12650 PF13439 Glycosyltransferase Family 4 AMPC_12650 PF00534 Glycosyl transferases group 1 AMPC_12670 PF00535 Glycosyl transferase family 2 AMPC_12680 PF00294 pfkB family carbohydrate kinase AMPC_12680 PF01467 Cytidylyltransferase-like AMPC_12690 PF01467 Cytidylyltransferase-like AMPC_12690 PF00294 pfkB family carbohydrate kinase AMPC_12710 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AMPC_12720 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AMPC_12730 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AMPC_12750 PF00664 ABC transporter transmembrane region AMPC_12750 PF00005 ABC transporter AMPC_12760 PF00679 Elongation factor G C-terminus AMPC_12760 PF14492 Elongation Factor G, domain II AMPC_12760 PF03764 Elongation factor G, domain IV AMPC_12760 PF03144 Elongation factor Tu domain 2 AMPC_12760 PF00009 Elongation factor Tu GTP binding domain AMPC_12770 PF01914 MarC family integral membrane protein AMPC_12780 PF00535 Glycosyl transferase family 2 AMPC_12790 PF02684 Lipid-A-disaccharide synthetase AMPC_12810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_12810 PF00512 His Kinase A (phospho-acceptor) domain AMPC_12810 PF00989 PAS fold AMPC_12810 PF16736 Single Cache-like AMPC_12820 PF00072 Response regulator receiver domain AMPC_12820 PF00486 Transcriptional regulatory protein, C terminal AMPC_12830 PF04945 YHS domain AMPC_12840 PF00561 alpha/beta hydrolase fold AMPC_12860 PF01813 ATP synthase subunit D AMPC_12870 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMPC_12870 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMPC_12880 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMPC_12880 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMPC_12880 PF16886 ATPsynthase alpha/beta subunit N-term extension AMPC_12930 PF01496 V-type ATPase 116kDa subunit family AMPC_12950 PF03641 Possible lysine decarboxylase AMPC_12970 PF02910 Fumarate reductase flavoprotein C-term AMPC_12970 PF00890 FAD binding domain AMPC_12990 PF00534 Glycosyl transferases group 1 AMPC_12990 PF13439 Glycosyltransferase Family 4 AMPC_13050 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMPC_13070 PF02397 Bacterial sugar transferase AMPC_13080 PF13614 AAA domain AMPC_13130 PF00158 Sigma-54 interaction domain AMPC_13130 PF00072 Response regulator receiver domain AMPC_13130 PF02954 Bacterial regulatory protein, Fis family AMPC_13150 PF08486 Stage II sporulation protein AMPC_13160 PF01063 Amino-transferase class IV AMPC_13290 PF02796 Helix-turn-helix domain of resolvase AMPC_13290 PF00239 Resolvase, N terminal domain AMPC_13390 PF00239 Resolvase, N terminal domain AMPC_13390 PF02796 Helix-turn-helix domain of resolvase AMPC_13410 PF01555 DNA methylase AMPC_13440 PF02595 Glycerate kinase family AMPC_13450 PF02652 L-lactate permease AMPC_13480 PF00106 short chain dehydrogenase AMPC_13490 PF02219 Methylenetetrahydrofolate reductase AMPC_13500 PF03449 Transcription elongation factor, N-terminal AMPC_13500 PF01272 Transcription elongation factor, GreA/GreB, C-term AMPC_13540 PF01926 50S ribosome-binding GTPase AMPC_13560 PF01121 Dephospho-CoA kinase AMPC_13610 PF00012 Hsp70 protein AMPC_13630 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMPC_13630 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMPC_13640 PF00202 Aminotransferase class-III AMPC_13650 PF10431 C-terminal, D2-small domain, of ClpB protein AMPC_13650 PF07724 AAA domain (Cdc48 subfamily) AMPC_13660 PF00227 Proteasome subunit AMPC_13680 PF02899 Phage integrase, N-terminal SAM-like domain AMPC_13680 PF00589 Phage integrase family AMPC_13690 PF01134 Glucose inhibited division protein A AMPC_13740 PF01131 DNA topoisomerase AMPC_13740 PF01751 Toprim domain AMPC_13740 PF01396 Topoisomerase DNA binding C4 zinc finger AMPC_13750 PF02481 DNA recombination-mediator protein A AMPC_13750 PF17782 DprA winged helix domain AMPC_13760 PF01476 LysM domain AMPC_13770 PF02578 Multi-copper polyphenol oxidoreductase laccase AMPC_13790 PF00072 Response regulator receiver domain AMPC_13840 PF00437 Type II/IV secretion system protein AMPC_13860 PF03462 PCRF domain AMPC_13860 PF00472 RF-1 domain AMPC_13880 PF00795 Carbon-nitrogen hydrolase AMPC_13890 PF02130 Uncharacterized protein family UPF0054 AMPC_13900 PF07698 7TM receptor with intracellular HD hydrolase AMPC_13900 PF07697 7TM-HD extracellular AMPC_13900 PF01966 HD domain AMPC_13910 PF02562 PhoH-like protein AMPC_13940 PF03819 MazG nucleotide pyrophosphohydrolase domain AMPC_13950 PF01649 Ribosomal protein S20 AMPC_13970 PF00133 tRNA synthetases class I (I, L, M and V) AMPC_13970 PF08264 Anticodon-binding domain of tRNA AMPC_13970 PF13603 Leucyl-tRNA synthetase, Domain 2 AMPC_13970 PF09334 tRNA synthetases class I (M) AMPC_13980 PF01336 OB-fold nucleic acid binding domain AMPC_13980 PF00152 tRNA synthetases class II (D, K and N) AMPC_14020 PF03091 CutA1 divalent ion tolerance protein AMPC_14030 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMPC_14030 PF02770 Acyl-CoA dehydrogenase, middle domain AMPC_14030 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMPC_14080 PF17755 UvrA DNA-binding domain AMPC_14080 PF17760 UvrA interaction domain AMPC_14090 PF02915 Rubrerythrin AMPC_14110 PF00293 NUDIX domain AMPC_14130 PF13180 PDZ domain AMPC_14130 PF02163 Peptidase family M50 AMPC_14150 PF02391 MoaE protein AMPC_14160 PF00486 Transcriptional regulatory protein, C terminal AMPC_14160 PF00072 Response regulator receiver domain AMPC_14170 PF01966 HD domain AMPC_14180 PF13419 Haloacid dehalogenase-like hydrolase AMPC_14200 PF13180 PDZ domain AMPC_14220 PF00588 SpoU rRNA Methylase family AMPC_14230 PF01259 SAICAR synthetase AMPC_14250 PF00206 Lyase AMPC_14250 PF10397 Adenylosuccinate lyase C-terminus AMPC_14260 PF00692 dUTPase AMPC_14270 PF03725 3' exoribonuclease family, domain 2 AMPC_14270 PF01138 3' exoribonuclease family, domain 1 AMPC_14270 PF00575 S1 RNA binding domain AMPC_14270 PF00013 KH domain AMPC_14270 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AMPC_14280 PF00312 Ribosomal protein S15 AMPC_14290 PF16198 tRNA pseudouridylate synthase B C-terminal domain AMPC_14290 PF01509 TruB family pseudouridylate synthase (N terminal domain) AMPC_14290 PF09157 Pseudouridine synthase II TruB, C-terminal AMPC_14300 PF02033 Ribosome-binding factor A AMPC_14320 PF11987 Translation-initiation factor 2 AMPC_14320 PF04760 Translation initiation factor IF-2, N-terminal region AMPC_14320 PF00009 Elongation factor Tu GTP binding domain AMPC_14340 PF00575 S1 RNA binding domain AMPC_14340 PF08529 NusA N-terminal domain AMPC_14340 PF13184 NusA-like KH domain AMPC_14350 PF17384 RimP C-terminal SH3 domain AMPC_14350 PF02576 RimP N-terminal domain AMPC_14380 PF01728 FtsJ-like methyltransferase AMPC_14380 PF01479 S4 domain AMPC_14390 PF02779 Transketolase, pyrimidine binding domain AMPC_14390 PF02780 Transketolase, C-terminal domain AMPC_14390 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AMPC_14400 PF00072 Response regulator receiver domain AMPC_14400 PF00486 Transcriptional regulatory protein, C terminal AMPC_14410 PF02609 Exonuclease VII small subunit AMPC_14420 PF13742 OB-fold nucleic acid binding domain AMPC_14420 PF02601 Exonuclease VII, large subunit AMPC_14440 PF00762 Ferrochelatase AMPC_14450 PF04055 Radical SAM superfamily AMPC_14450 PF06969 HemN C-terminal domain AMPC_14460 PF01208 Uroporphyrinogen decarboxylase (URO-D) AMPC_14470 PF02594 Uncharacterised ACR, YggU family COG1872 AMPC_14480 PF06230 LpxI C-terminal domain AMPC_14480 PF17930 LpxI N-terminal domain AMPC_14490 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AMPC_14490 PF00132 Bacterial transferase hexapeptide (six repeats) AMPC_14500 PF07977 FabA-like domain AMPC_14510 PF00132 Bacterial transferase hexapeptide (six repeats) AMPC_14510 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AMPC_14530 PF01103 Surface antigen AMPC_14530 PF07244 Surface antigen variable number repeat AMPC_14540 PF00005 ABC transporter AMPC_14550 PF02687 FtsX-like permease family AMPC_14550 PF12704 MacB-like periplasmic core domain AMPC_14560 PF00152 tRNA synthetases class II (D, K and N) AMPC_14560 PF01336 OB-fold nucleic acid binding domain AMPC_14570 PF09210 Domain of unknown function (DUF1957) AMPC_14570 PF03065 Glycosyl hydrolase family 57 AMPC_14610 PF00672 HAMP domain AMPC_14610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_14610 PF00512 His Kinase A (phospho-acceptor) domain AMPC_14610 PF00989 PAS fold AMPC_14630 PF00106 short chain dehydrogenase AMPC_14640 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) AMPC_14650 PF01270 Glycosyl hydrolases family 8 AMPC_14660 PF03170 Bacterial cellulose synthase subunit AMPC_14670 PF07238 PilZ domain AMPC_14670 PF03552 Cellulose synthase AMPC_14670 PF00535 Glycosyl transferase family 2 AMPC_14700 PF02954 Bacterial regulatory protein, Fis family AMPC_14700 PF00072 Response regulator receiver domain AMPC_14700 PF00158 Sigma-54 interaction domain AMPC_14740 PF03710 Glutamate-ammonia ligase adenylyltransferase AMPC_14740 PF08335 GlnD PII-uridylyltransferase AMPC_14750 PF13520 Amino acid permease AMPC_14770 PF01063 Amino-transferase class IV AMPC_14790 PF01261 Xylose isomerase-like TIM barrel AMPC_14810 PF00266 Aminotransferase class-V AMPC_14820 PF00072 Response regulator receiver domain AMPC_14830 PF01812 5-formyltetrahydrofolate cyclo-ligase family AMPC_14840 PF13277 YmdB-like protein AMPC_14850 PF00579 tRNA synthetases class I (W and Y) AMPC_14860 PF01728 FtsJ-like methyltransferase AMPC_14870 PF00037 4Fe-4S binding domain AMPC_14880 PF00037 4Fe-4S binding domain AMPC_14890 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMPC_14890 PF00205 Thiamine pyrophosphate enzyme, central domain AMPC_14890 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMPC_14900 PF00857 Isochorismatase family AMPC_14910 PF13426 PAS domain AMPC_14910 PF08448 PAS fold AMPC_14910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_14910 PF00512 His Kinase A (phospho-acceptor) domain AMPC_14910 PF00072 Response regulator receiver domain AMPC_14920 PF10137 Predicted nucleotide-binding protein containing TIR-like domain AMPC_15020 PF07731 Multicopper oxidase AMPC_15020 PF07732 Multicopper oxidase AMPC_15020 PF00394 Multicopper oxidase AMPC_15030 PF08240 Alcohol dehydrogenase GroES-like domain AMPC_15030 PF00107 Zinc-binding dehydrogenase AMPC_15050 PF00072 Response regulator receiver domain AMPC_15050 PF00486 Transcriptional regulatory protein, C terminal AMPC_15060 PF00486 Transcriptional regulatory protein, C terminal AMPC_15060 PF00072 Response regulator receiver domain AMPC_15070 PF00005 ABC transporter AMPC_15080 PF00528 Binding-protein-dependent transport system inner membrane component AMPC_15090 PF00723 Glycosyl hydrolases family 15 AMPC_15170 PF02735 Ku70/Ku80 beta-barrel domain AMPC_15180 PF01068 ATP dependent DNA ligase domain AMPC_15180 PF13298 DNA polymerase Ligase (LigD) AMPC_15180 PF04679 ATP dependent DNA ligase C terminal region AMPC_15210 PF13298 DNA polymerase Ligase (LigD) AMPC_15210 PF01068 ATP dependent DNA ligase domain AMPC_15210 PF04679 ATP dependent DNA ligase C terminal region AMPC_15220 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AMPC_15240 PF17864 RuvB AAA lid domain AMPC_15240 PF05496 Holliday junction DNA helicase RuvB P-loop domain AMPC_15240 PF05491 RuvB C-terminal winged helix domain AMPC_15250 PF01330 RuvA N terminal domain AMPC_15250 PF07499 RuvA, C-terminal domain AMPC_15260 PF02075 Crossover junction endodeoxyribonuclease RuvC AMPC_15270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_15280 PF05977 Transmembrane secretion effector AMPC_15290 PF01554 MatE AMPC_15310 PF01139 tRNA-splicing ligase RtcB AMPC_15330 PF03190 Protein of unknown function, DUF255 AMPC_15350 PF02416 mttA/Hcf106 family AMPC_15370 PF07879 PHB/PHA accumulation regulator DNA-binding domain AMPC_15370 PF05233 PHB accumulation regulatory domain AMPC_15380 PF03466 LysR substrate binding domain AMPC_15380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMPC_15430 PF13614 AAA domain AMPC_15450 PF02374 Anion-transporting ATPase AMPC_15460 PF02374 Anion-transporting ATPase AMPC_15470 PF01894 Uncharacterised protein family UPF0047 AMPC_15490 PF00501 AMP-binding enzyme AMPC_15500 PF01053 Cys/Met metabolism PLP-dependent enzyme AMPC_15510 PF01507 Phosphoadenosine phosphosulfate reductase family AMPC_15520 PF00009 Elongation factor Tu GTP binding domain AMPC_15530 PF01507 Phosphoadenosine phosphosulfate reductase family AMPC_15550 PF10414 Sirohaem synthase dimerisation region AMPC_15550 PF14824 Sirohaem biosynthesis protein central AMPC_15550 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMPC_15560 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMPC_15560 PF10414 Sirohaem synthase dimerisation region AMPC_15560 PF14824 Sirohaem biosynthesis protein central AMPC_15570 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMPC_15570 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMPC_15590 PF00528 Binding-protein-dependent transport system inner membrane component AMPC_15600 PF00528 Binding-protein-dependent transport system inner membrane component AMPC_15610 PF00005 ABC transporter AMPC_15610 PF17850 CysA C-terminal regulatory domain AMPC_15610 PF12857 TOBE-like domain AMPC_15620 PF00291 Pyridoxal-phosphate dependent enzyme AMPC_15630 PF00512 His Kinase A (phospho-acceptor) domain AMPC_15630 PF00989 PAS fold AMPC_15630 PF13426 PAS domain AMPC_15630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_15630 PF13188 PAS domain AMPC_15640 PF02954 Bacterial regulatory protein, Fis family AMPC_15640 PF00072 Response regulator receiver domain AMPC_15640 PF00158 Sigma-54 interaction domain AMPC_15650 PF03264 NapC/NirT cytochrome c family, N-terminal region AMPC_15660 PF02335 Cytochrome c552 AMPC_15680 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMPC_15680 PF00384 Molybdopterin oxidoreductase AMPC_15680 PF01568 Molydopterin dinucleotide binding domain AMPC_15710 PF01676 Metalloenzyme superfamily AMPC_15720 PF01791 DeoC/LacD family aldolase AMPC_15740 PF03772 Competence protein AMPC_15740 PF00753 Metallo-beta-lactamase superfamily AMPC_15740 PF13567 Domain of unknown function (DUF4131) AMPC_15760 PF01171 PP-loop family AMPC_15800 PF01040 UbiA prenyltransferase family AMPC_15810 PF00005 ABC transporter AMPC_15830 PF04238 Protein of unknown function (DUF420) AMPC_15840 PF02630 SCO1/SenC AMPC_15860 PF00924 Mechanosensitive ion channel AMPC_15870 PF02743 Cache domain AMPC_15870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMPC_15870 PF00672 HAMP domain AMPC_15880 PF02743 Cache domain AMPC_15880 PF00672 HAMP domain AMPC_15880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMPC_15950 PF00072 Response regulator receiver domain AMPC_16030 PF00437 Type II/IV secretion system protein AMPC_16050 PF04972 BON domain AMPC_16050 PF00263 Bacterial type II and III secretion system protein AMPC_16050 PF13629 Pilus formation protein N terminal region AMPC_16120 PF00529 HlyD membrane-fusion protein of T1SS AMPC_16120 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMPC_16130 PF00873 AcrB/AcrD/AcrF family AMPC_16140 PF00899 ThiF family AMPC_16160 PF01026 TatD related DNase AMPC_16180 PF07690 Major Facilitator Superfamily AMPC_16190 PF01738 Dienelactone hydrolase family AMPC_16190 PF00156 Phosphoribosyl transferase domain AMPC_16210 PF13247 4Fe-4S dicluster domain AMPC_16230 PF04055 Radical SAM superfamily AMPC_16230 PF06463 Molybdenum Cofactor Synthesis C AMPC_16250 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AMPC_16250 PF10531 SLBB domain AMPC_16250 PF02563 Polysaccharide biosynthesis/export protein AMPC_16270 PF12708 Pectate lyase superfamily protein AMPC_16270 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) AMPC_16270 PF13229 Right handed beta helix region AMPC_16280 PF13439 Glycosyltransferase Family 4 AMPC_16280 PF00534 Glycosyl transferases group 1 AMPC_16290 PF00534 Glycosyl transferases group 1 AMPC_16340 PF01370 NAD dependent epimerase/dehydratase family AMPC_16350 PF00733 Asparagine synthase AMPC_16350 PF13537 Glutamine amidotransferase domain AMPC_16360 PF13477 Glycosyl transferase 4-like AMPC_16360 PF00534 Glycosyl transferases group 1 AMPC_16370 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMPC_16370 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMPC_16370 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMPC_16380 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMPC_16390 PF02719 Polysaccharide biosynthesis protein AMPC_16400 PF02706 Chain length determinant protein AMPC_16400 PF13807 G-rich domain on putative tyrosine kinase AMPC_16400 PF13614 AAA domain AMPC_16460 PF02397 Bacterial sugar transferase AMPC_16500 PF00248 Aldo/keto reductase family AMPC_16530 PF14537 Cytochrome c3 AMPC_16540 PF00892 EamA-like transporter family AMPC_16550 PF04545 Sigma-70, region 4 AMPC_16550 PF04539 Sigma-70 region 3 AMPC_16550 PF04542 Sigma-70 region 2 AMPC_16550 PF00140 Sigma-70 factor, region 1.2 AMPC_16570 PF01654 Cytochrome bd terminal oxidase subunit I AMPC_16580 PF02322 Cytochrome bd terminal oxidase subunit II AMPC_16590 PF00690 Cation transporter/ATPase, N-terminus AMPC_16590 PF00689 Cation transporting ATPase, C-terminus AMPC_16600 PF00005 ABC transporter AMPC_16610 PF00528 Binding-protein-dependent transport system inner membrane component AMPC_16620 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMPC_16640 PF18029 Glyoxalase-like domain AMPC_16640 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMPC_16650 PF00512 His Kinase A (phospho-acceptor) domain AMPC_16650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_16650 PF00989 PAS fold AMPC_16690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMPC_16690 PF03466 LysR substrate binding domain AMPC_16700 PF07883 Cupin domain AMPC_16710 PF01066 CDP-alcohol phosphatidyltransferase AMPC_16740 PF01022 Bacterial regulatory protein, arsR family AMPC_16750 PF01758 Sodium Bile acid symporter family AMPC_16760 PF01451 Low molecular weight phosphotyrosine protein phosphatase AMPC_16790 PF01381 Helix-turn-helix AMPC_16820 PF03705 CheR methyltransferase, all-alpha domain AMPC_16820 PF01739 CheR methyltransferase, SAM binding domain AMPC_16820 PF08448 PAS fold AMPC_16820 PF01339 CheB methylesterase AMPC_16840 PF00487 Fatty acid desaturase AMPC_16930 PF00271 Helicase conserved C-terminal domain AMPC_16960 PF12787 EcsC protein family AMPC_17020 PF00772 DnaB-like helicase N terminal domain AMPC_17020 PF03796 DnaB-like helicase C terminal domain AMPC_17050 PF13361 UvrD-like helicase C-terminal domain AMPC_17050 PF00580 UvrD/REP helicase N-terminal domain AMPC_17050 PF12705 PD-(D/E)XK nuclease superfamily AMPC_17110 PF03747 ADP-ribosylglycohydrolase AMPC_17120 PF07724 AAA domain (Cdc48 subfamily) AMPC_17120 PF10431 C-terminal, D2-small domain, of ClpB protein AMPC_17180 PF00438 S-adenosylmethionine synthetase, N-terminal domain AMPC_17180 PF02772 S-adenosylmethionine synthetase, central domain AMPC_17180 PF02773 S-adenosylmethionine synthetase, C-terminal domain AMPC_17210 PF13280 WYL domain AMPC_17230 PF00271 Helicase conserved C-terminal domain AMPC_17230 PF12137 RNA polymerase recycling family C-terminal AMPC_17230 PF00176 SNF2 family N-terminal domain AMPC_17230 PF18339 RapA N-terminal Tudor like domain 1 AMPC_17230 PF18337 RapA N-terminal Tudor like domain AMPC_17240 PF00270 DEAD/DEAH box helicase AMPC_17240 PF00271 Helicase conserved C-terminal domain AMPC_17340 PF02649 Type I GTP cyclohydrolase folE2 AMPC_17350 PF01242 6-pyruvoyl tetrahydropterin synthase AMPC_17360 PF04055 Radical SAM superfamily AMPC_17410 PF00437 Type II/IV secretion system protein AMPC_17420 PF03743 Bacterial conjugation TrbI-like protein AMPC_17440 PF04335 VirB8 protein AMPC_17460 PF04610 TrbL/VirB6 plasmid conjugal transfer protein AMPC_17480 PF10410 DnaB-helicase binding domain of primase AMPC_17480 PF08275 DNA primase catalytic core, N-terminal domain AMPC_17480 PF01807 CHC2 zinc finger AMPC_17490 PF03135 CagE, TrbE, VirB family, component of type IV transporter system AMPC_17520 PF01464 Transglycosylase SLT domain AMPC_17560 PF00069 Protein kinase domain AMPC_17560 PF08308 PEGA domain AMPC_17610 PF17762 HTH domain found in ParB protein AMPC_17610 PF02195 ParB-like nuclease domain AMPC_17620 PF04002 RadC-like JAB domain AMPC_17640 PF17868 AAA lid domain AMPC_17640 PF07728 AAA domain (dynein-related subfamily) AMPC_17640 PF12592 Protein of unknown function (DUF3763) AMPC_17690 PF04607 Region found in RelA / SpoT proteins AMPC_17690 PF02824 TGS domain AMPC_17690 PF13291 ACT domain AMPC_17700 PF17762 HTH domain found in ParB protein AMPC_17700 PF02195 ParB-like nuclease domain AMPC_17720 PF12615 F sex factor protein N terminal AMPC_17720 PF10412 Type IV secretion-system coupling protein DNA-binding domain AMPC_17730 PF08751 TrwC relaxase AMPC_17730 PF07057 DNA helicase TraI AMPC_17730 PF18272 single-stranded DNA binding TraI N-terminal subdomain AMPC_17730 PF18340 DNA relaxase TraI 2B/2B-like domain AMPC_17770 PF02899 Phage integrase, N-terminal SAM-like domain AMPC_17770 PF00589 Phage integrase family AMPC_17800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMPC_17810 PF00557 Metallopeptidase family M24 AMPC_17810 PF05195 Aminopeptidase P, N-terminal domain AMPC_17890 PF02881 SRP54-type protein, helical bundle domain AMPC_17890 PF00448 SRP54-type protein, GTPase domain AMPC_17890 PF02978 Signal peptide binding domain AMPC_17900 PF01875 Memo-like protein AMPC_18070 PF13180 PDZ domain AMPC_18100 PF01636 Phosphotransferase enzyme family AMPC_18120 PF00158 Sigma-54 interaction domain AMPC_18120 PF00072 Response regulator receiver domain AMPC_18120 PF02954 Bacterial regulatory protein, Fis family AMPC_18140 PF00691 OmpA family AMPC_18150 PF00905 Penicillin binding protein transpeptidase domain AMPC_18150 PF17092 Penicillin-binding protein OB-like domain AMPC_18150 PF00912 Transglycosylase AMPC_18190 PF00690 Cation transporter/ATPase, N-terminus AMPC_18190 PF00689 Cation transporting ATPase, C-terminus AMPC_18200 PF03009 Glycerophosphoryl diester phosphodiesterase family AMPC_18240 PF07690 Major Facilitator Superfamily AMPC_18250 PF13193 AMP-binding enzyme C-terminal domain AMPC_18250 PF00501 AMP-binding enzyme AMPC_18280 PF12801 4Fe-4S binding domain AMPC_18290 PF00682 HMGL-like AMPC_18290 PF00364 Biotin-requiring enzyme AMPC_18290 PF02785 Biotin carboxylase C-terminal domain AMPC_18290 PF00289 Biotin carboxylase, N-terminal domain AMPC_18290 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMPC_18290 PF02436 Conserved carboxylase domain AMPC_18300 PF02743 Cache domain AMPC_18300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMPC_18300 PF00672 HAMP domain AMPC_18310 PF00534 Glycosyl transferases group 1 AMPC_18310 PF13439 Glycosyltransferase Family 4 AMPC_18370 PF00271 Helicase conserved C-terminal domain AMPC_18370 PF00270 DEAD/DEAH box helicase AMPC_18410 PF01565 FAD binding domain AMPC_18410 PF02913 FAD linked oxidases, C-terminal domain AMPC_18420 PF02913 FAD linked oxidases, C-terminal domain AMPC_18420 PF01565 FAD binding domain AMPC_18430 PF13183 4Fe-4S dicluster domain AMPC_18430 PF02754 Cysteine-rich domain AMPC_18440 PF02652 L-lactate permease AMPC_18470 PF00106 short chain dehydrogenase AMPC_18480 PF00106 short chain dehydrogenase AMPC_18510 PF00691 OmpA family AMPC_18560 PF00588 SpoU rRNA Methylase family AMPC_18580 PF13419 Haloacid dehalogenase-like hydrolase AMPC_18600 PF00501 AMP-binding enzyme AMPC_18610 PF00682 HMGL-like AMPC_18630 PF03458 UPF0126 domain AMPC_18650 PF00793 DAHP synthetase I family AMPC_18670 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) AMPC_18680 PF13493 Domain of unknown function (DUF4118) AMPC_18680 PF02702 Osmosensitive K+ channel His kinase sensor domain AMPC_18680 PF13492 GAF domain AMPC_18680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_18680 PF00512 His Kinase A (phospho-acceptor) domain AMPC_18690 PF00486 Transcriptional regulatory protein, C terminal AMPC_18690 PF00072 Response regulator receiver domain AMPC_18700 PF00266 Aminotransferase class-V AMPC_18730 PF01161 Phosphatidylethanolamine-binding protein AMPC_18740 PF01965 DJ-1/PfpI family AMPC_18760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_18760 PF00512 His Kinase A (phospho-acceptor) domain AMPC_18760 PF09456 RcsC Alpha-Beta-Loop (ABL) AMPC_18760 PF00072 Response regulator receiver domain AMPC_18770 PF01975 Survival protein SurE AMPC_18780 PF01476 LysM domain AMPC_18780 PF01551 Peptidase family M23 AMPC_18790 PF00156 Phosphoribosyl transferase domain AMPC_18820 PF01594 AI-2E family transporter AMPC_18840 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMPC_18840 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMPC_18840 PF02770 Acyl-CoA dehydrogenase, middle domain AMPC_18860 PF07516 SecA Wing and Scaffold domain AMPC_18860 PF07517 SecA DEAD-like domain AMPC_18860 PF02810 SEC-C motif AMPC_18860 PF01043 SecA preprotein cross-linking domain AMPC_18870 PF01476 LysM domain AMPC_18870 PF08525 Opacity-associated protein A N-terminal motif AMPC_18870 PF01551 Peptidase family M23 AMPC_18890 PF02463 RecF/RecN/SMC N terminal domain AMPC_18900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_18900 PF00512 His Kinase A (phospho-acceptor) domain AMPC_18920 PF01513 ATP-NAD kinase AMPC_18930 PF00004 ATPase family associated with various cellular activities (AAA) AMPC_18930 PF16193 AAA C-terminal domain AMPC_18930 PF12002 MgsA AAA+ ATPase C terminal AMPC_18980 PF00072 Response regulator receiver domain AMPC_18980 PF00158 Sigma-54 interaction domain AMPC_18980 PF02954 Bacterial regulatory protein, Fis family AMPC_18990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_18990 PF13188 PAS domain AMPC_18990 PF00512 His Kinase A (phospho-acceptor) domain AMPC_18990 PF08448 PAS fold AMPC_18990 PF00072 Response regulator receiver domain AMPC_19000 PF00072 Response regulator receiver domain AMPC_19000 PF00990 Diguanylate cyclase, GGDEF domain AMPC_19020 PF01923 Cobalamin adenosyltransferase AMPC_19030 PF00082 Subtilase family AMPC_19050 PF01521 Iron-sulphur cluster biosynthesis AMPC_19060 PF00753 Metallo-beta-lactamase superfamily AMPC_19070 PF00171 Aldehyde dehydrogenase family AMPC_19100 PF12804 MobA-like NTP transferase domain AMPC_19120 PF00486 Transcriptional regulatory protein, C terminal AMPC_19120 PF00072 Response regulator receiver domain AMPC_19130 PF01339 CheB methylesterase AMPC_19130 PF00072 Response regulator receiver domain AMPC_19140 PF01584 CheW-like domain AMPC_19140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_19140 PF01627 Hpt domain AMPC_19140 PF00072 Response regulator receiver domain AMPC_19150 PF02743 Cache domain AMPC_19150 PF00672 HAMP domain AMPC_19150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMPC_19170 PF01339 CheB methylesterase AMPC_19170 PF01739 CheR methyltransferase, SAM binding domain AMPC_19170 PF03705 CheR methyltransferase, all-alpha domain AMPC_19170 PF08448 PAS fold AMPC_19190 PF00374 Nickel-dependent hydrogenase AMPC_19210 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal AMPC_19210 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMPC_19210 PF00384 Molybdopterin oxidoreductase AMPC_19220 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AMPC_19220 PF00037 4Fe-4S binding domain AMPC_19220 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMPC_19240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_19240 PF00512 His Kinase A (phospho-acceptor) domain AMPC_19240 PF08448 PAS fold AMPC_19240 PF13426 PAS domain AMPC_19240 PF00072 Response regulator receiver domain AMPC_19260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_19260 PF00512 His Kinase A (phospho-acceptor) domain AMPC_19260 PF08448 PAS fold AMPC_19260 PF13426 PAS domain AMPC_19260 PF00072 Response regulator receiver domain AMPC_19280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_19280 PF00512 His Kinase A (phospho-acceptor) domain AMPC_19290 PF02233 NAD(P) transhydrogenase beta subunit AMPC_19300 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AMPC_19310 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AMPC_19310 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AMPC_19340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_19340 PF00512 His Kinase A (phospho-acceptor) domain AMPC_19340 PF00989 PAS fold AMPC_19360 PF00072 Response regulator receiver domain AMPC_19360 PF00486 Transcriptional regulatory protein, C terminal AMPC_19410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_19410 PF00512 His Kinase A (phospho-acceptor) domain AMPC_19410 PF00072 Response regulator receiver domain AMPC_19410 PF13188 PAS domain AMPC_19410 PF08448 PAS fold AMPC_19440 PF16916 Dimerisation domain of Zinc Transporter AMPC_19440 PF01545 Cation efflux family AMPC_19500 PF02743 Cache domain AMPC_19500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_19500 PF00512 His Kinase A (phospho-acceptor) domain AMPC_19510 PF00072 Response regulator receiver domain AMPC_19510 PF13188 PAS domain AMPC_19510 PF08448 PAS fold AMPC_19510 PF00512 His Kinase A (phospho-acceptor) domain AMPC_19510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_19520 PF00672 HAMP domain AMPC_19520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_19520 PF00512 His Kinase A (phospho-acceptor) domain AMPC_19520 PF01627 Hpt domain AMPC_19520 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMPC_19520 PF00072 Response regulator receiver domain AMPC_19530 PF11999 Protein of unknown function (DUF3494) AMPC_19530 PF02368 Bacterial Ig-like domain (group 2) AMPC_19540 PF08240 Alcohol dehydrogenase GroES-like domain AMPC_19540 PF00107 Zinc-binding dehydrogenase AMPC_19570 PF01578 Cytochrome C assembly protein AMPC_19570 PF05140 ResB-like family AMPC_19600 PF01578 Cytochrome C assembly protein AMPC_19600 PF05140 ResB-like family AMPC_19640 PF01022 Bacterial regulatory protein, arsR family AMPC_19680 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMPC_19680 PF01872 RibD C-terminal domain AMPC_19700 PF01066 CDP-alcohol phosphatidyltransferase AMPC_19720 PF10145 Phage-related minor tail protein AMPC_19720 PF01464 Transglycosylase SLT domain AMPC_19720 PF01551 Peptidase family M23 AMPC_19730 PF02910 Fumarate reductase flavoprotein C-term AMPC_19730 PF00890 FAD binding domain AMPC_19750 PF00156 Phosphoribosyl transferase domain AMPC_19800 PF00795 Carbon-nitrogen hydrolase AMPC_19820 PF00158 Sigma-54 interaction domain AMPC_19820 PF00072 Response regulator receiver domain AMPC_19820 PF02954 Bacterial regulatory protein, Fis family AMPC_19830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_19830 PF00989 PAS fold AMPC_19830 PF16736 Single Cache-like AMPC_19830 PF00512 His Kinase A (phospho-acceptor) domain AMPC_19840 PF02702 Osmosensitive K+ channel His kinase sensor domain AMPC_19840 PF00512 His Kinase A (phospho-acceptor) domain AMPC_19840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_19840 PF13492 GAF domain AMPC_19840 PF13493 Domain of unknown function (DUF4118) AMPC_19860 PF02669 K+-transporting ATPase, c chain AMPC_19880 PF03814 Potassium-transporting ATPase A subunit AMPC_19940 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMPC_19940 PF02774 Semialdehyde dehydrogenase, dimerisation domain AMPC_19950 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMPC_19950 PF02774 Semialdehyde dehydrogenase, dimerisation domain AMPC_19970 PF01370 NAD dependent epimerase/dehydratase family AMPC_19970 PF08338 Domain of unknown function (DUF1731) AMPC_19980 PF02163 Peptidase family M50 AMPC_19980 PF00571 CBS domain AMPC_19990 PF00814 Glycoprotease family AMPC_20000 PF17820 PDZ domain AMPC_20000 PF02163 Peptidase family M50 AMPC_20010 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AMPC_20010 PF13288 DXP reductoisomerase C-terminal domain AMPC_20010 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AMPC_20030 PF01255 Putative undecaprenyl diphosphate synthase AMPC_20040 PF07714 Protein tyrosine kinase AMPC_20060 PF01695 IstB-like ATP binding protein AMPC_20080 PF13193 AMP-binding enzyme C-terminal domain AMPC_20080 PF00501 AMP-binding enzyme AMPC_20090 PF00561 alpha/beta hydrolase fold AMPC_20100 PF01661 Macro domain AMPC_20110 PF00696 Amino acid kinase family AMPC_20110 PF13840 ACT domain AMPC_20110 PF01842 ACT domain AMPC_20120 PF00005 ABC transporter AMPC_20160 PF01192 RNA polymerase Rpb6 AMPC_20200 PF00166 Chaperonin 10 Kd subunit AMPC_20210 PF00118 TCP-1/cpn60 chaperonin family AMPC_20240 PF00873 AcrB/AcrD/AcrF family AMPC_20250 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMPC_20250 PF00529 HlyD membrane-fusion protein of T1SS AMPC_20270 PF00158 Sigma-54 interaction domain AMPC_20270 PF00072 Response regulator receiver domain AMPC_20270 PF02954 Bacterial regulatory protein, Fis family AMPC_20280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_20310 PF03734 L,D-transpeptidase catalytic domain AMPC_20340 PF01578 Cytochrome C assembly protein AMPC_20360 PF00300 Histidine phosphatase superfamily (branch 1) AMPC_20360 PF13456 Reverse transcriptase-like AMPC_20380 PF04539 Sigma-70 region 3 AMPC_20380 PF04545 Sigma-70, region 4 AMPC_20380 PF00140 Sigma-70 factor, region 1.2 AMPC_20380 PF04542 Sigma-70 region 2 AMPC_20380 PF03979 Sigma-70 factor, region 1.1 AMPC_20380 PF04546 Sigma-70, non-essential region AMPC_20390 PF10410 DnaB-helicase binding domain of primase AMPC_20390 PF08275 DNA primase catalytic core, N-terminal domain AMPC_20390 PF01807 CHC2 zinc finger AMPC_20400 PF09424 Yqey-like protein AMPC_20410 PF01165 Ribosomal protein S21 AMPC_20420 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AMPC_20430 PF01502 Phosphoribosyl-AMP cyclohydrolase AMPC_20440 PF00977 Histidine biosynthesis protein AMPC_20450 PF00977 Histidine biosynthesis protein AMPC_20460 PF00117 Glutamine amidotransferase class-I AMPC_20470 PF00475 Imidazoleglycerol-phosphate dehydratase AMPC_20480 PF00155 Aminotransferase class I and II AMPC_20490 PF00815 Histidinol dehydrogenase AMPC_20550 PF01514 Secretory protein of YscJ/FliF family AMPC_20590 PF00813 FliP family AMPC_20600 PF01313 Bacterial export proteins, family 3 AMPC_20620 PF01312 FlhB HrpN YscU SpaS Family AMPC_20630 PF00771 FHIPEP family AMPC_20640 PF00216 Bacterial DNA-binding protein AMPC_20650 PF03631 Virulence factor BrkB AMPC_20660 PF00575 S1 RNA binding domain AMPC_20660 PF10150 Ribonuclease E/G family AMPC_20660 PF00575 S1 RNA binding domain AMPC_20660 PF10150 Ribonuclease E/G family AMPC_20700 PF00348 Polyprenyl synthetase AMPC_20760 PF13243 Squalene-hopene cyclase C-terminal domain AMPC_20760 PF13249 Squalene-hopene cyclase N-terminal domain AMPC_20780 PF00890 FAD binding domain AMPC_20790 PF01070 FMN-dependent dehydrogenase AMPC_20810 PF01370 NAD dependent epimerase/dehydratase family AMPC_20820 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMPC_20820 PF00072 Response regulator receiver domain AMPC_20820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_20820 PF00512 His Kinase A (phospho-acceptor) domain AMPC_20820 PF01627 Hpt domain AMPC_20830 PF00708 Acylphosphatase AMPC_20840 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AMPC_20840 PF03120 NAD-dependent DNA ligase OB-fold domain AMPC_20840 PF00533 BRCA1 C Terminus (BRCT) domain AMPC_20840 PF12826 Helix-hairpin-helix motif AMPC_20840 PF01653 NAD-dependent DNA ligase adenylation domain AMPC_20850 PF00114 Pilin (bacterial filament) AMPC_20850 PF07963 Prokaryotic N-terminal methylation motif AMPC_20870 PF07497 Rho termination factor, RNA-binding domain AMPC_20870 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMPC_20870 PF07498 Rho termination factor, N-terminal domain AMPC_20880 PF01197 Ribosomal protein L31 AMPC_20900 PF00158 Sigma-54 interaction domain AMPC_20900 PF00072 Response regulator receiver domain AMPC_20900 PF02954 Bacterial regulatory protein, Fis family AMPC_20920 PF00263 Bacterial type II and III secretion system protein AMPC_20920 PF03958 Bacterial type II/III secretion system short domain AMPC_20930 PF00437 Type II/IV secretion system protein AMPC_20940 PF00482 Type II secretion system (T2SS), protein F AMPC_20950 PF08334 Type II secretion system (T2SS), protein G AMPC_20950 PF07963 Prokaryotic N-terminal methylation motif AMPC_20980 PF11612 Type II secretion system (T2SS), protein J AMPC_20980 PF07963 Prokaryotic N-terminal methylation motif AMPC_21030 PF00364 Biotin-requiring enzyme AMPC_21030 PF00561 alpha/beta hydrolase fold AMPC_21040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMPC_21040 PF08447 PAS fold AMPC_21040 PF13426 PAS domain AMPC_21050 PF02463 RecF/RecN/SMC N terminal domain AMPC_21050 PF06470 SMC proteins Flexible Hinge Domain AMPC_21080 PF11756 Nitrous oxide-stimulated promoter AMPC_21090 PF02881 SRP54-type protein, helical bundle domain AMPC_21090 PF00448 SRP54-type protein, GTPase domain AMPC_21100 PF02690 Na+/Pi-cotransporter AMPC_21140 PF13180 PDZ domain AMPC_21140 PF03572 Peptidase family S41 AMPC_21160 PF02687 FtsX-like permease family AMPC_21160 PF18075 FtsX extracellular domain AMPC_21170 PF00005 ABC transporter AMPC_21190 PF01177 Asp/Glu/Hydantoin racemase AMPC_21210 PF01618 MotA/TolQ/ExbB proton channel family AMPC_21220 PF02472 Biopolymer transport protein ExbD/TolR AMPC_21240 PF07676 WD40-like Beta Propeller Repeat AMPC_21240 PF04052 TolB amino-terminal domain AMPC_21250 PF02541 Ppx/GppA phosphatase family AMPC_21260 PF03551 Transcriptional regulator PadR-like family AMPC_21260 PF13847 Methyltransferase domain AMPC_21280 PF07244 Surface antigen variable number repeat AMPC_21280 PF01103 Surface antigen AMPC_21300 PF13401 AAA domain AMPC_21300 PF01471 Putative peptidoglycan binding domain AMPC_21320 PF00289 Biotin carboxylase, N-terminal domain AMPC_21320 PF02785 Biotin carboxylase C-terminal domain AMPC_21320 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMPC_21330 PF00364 Biotin-requiring enzyme AMPC_21340 PF01132 Elongation factor P (EF-P) OB domain AMPC_21340 PF08207 Elongation factor P (EF-P) KOW-like domain AMPC_21340 PF09285 Elongation factor P, C-terminal AMPC_21370 PF11741 AMIN domain AMPC_21370 PF07660 Secretin and TonB N terminus short domain AMPC_21370 PF03958 Bacterial type II/III secretion system short domain AMPC_21370 PF00263 Bacterial type II and III secretion system protein AMPC_21410 PF11104 Type IV pilus assembly protein PilM; AMPC_21420 PF00158 Sigma-54 interaction domain AMPC_21420 PF02954 Bacterial regulatory protein, Fis family AMPC_21420 PF00072 Response regulator receiver domain AMPC_21430 PF00512 His Kinase A (phospho-acceptor) domain AMPC_21430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_21440 PF06750 Bacterial Peptidase A24 N-terminal domain AMPC_21440 PF01478 Type IV leader peptidase family AMPC_21450 PF00005 ABC transporter AMPC_21460 PF07963 Prokaryotic N-terminal methylation motif AMPC_21460 PF14245 Type IV pilin PilA AMPC_21560 PF00072 Response regulator receiver domain AMPC_21560 PF02954 Bacterial regulatory protein, Fis family AMPC_21560 PF00158 Sigma-54 interaction domain AMPC_21570 PF00512 His Kinase A (phospho-acceptor) domain AMPC_21570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_21580 PF00482 Type II secretion system (T2SS), protein F AMPC_21590 PF00437 Type II/IV secretion system protein AMPC_21600 PF00437 Type II/IV secretion system protein AMPC_21600 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMPC_21610 PF06574 FAD synthetase AMPC_21610 PF01687 Riboflavin kinase AMPC_21620 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMPC_21630 PF01048 Phosphorylase superfamily AMPC_21640 PF02885 Glycosyl transferase family, helical bundle domain AMPC_21640 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AMPC_21640 PF00591 Glycosyl transferase family, a/b domain AMPC_21650 PF01709 Transcriptional regulator AMPC_21670 PF04384 Iron-sulphur cluster assembly AMPC_21680 PF00111 2Fe-2S iron-sulfur cluster binding domain AMPC_21690 PF00012 Hsp70 protein AMPC_21700 PF07743 HSCB C-terminal oligomerisation domain AMPC_21710 PF01521 Iron-sulphur cluster biosynthesis AMPC_21720 PF01592 NifU-like N terminal domain AMPC_21730 PF00266 Aminotransferase class-V AMPC_21740 PF11412 Disulphide bond corrector protein DsbC AMPC_21740 PF02683 Cytochrome C biogenesis protein transmembrane region AMPC_21780 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMPC_21780 PF02774 Semialdehyde dehydrogenase, dimerisation domain AMPC_21790 PF01960 ArgJ family AMPC_21800 PF01316 Arginine repressor, DNA binding domain AMPC_21800 PF02863 Arginine repressor, C-terminal domain AMPC_21810 PF00672 HAMP domain AMPC_21810 PF02203 Tar ligand binding domain homologue AMPC_21810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMPC_21830 PF01965 DJ-1/PfpI family AMPC_21850 PF01593 Flavin containing amine oxidoreductase AMPC_21860 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMPC_21860 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMPC_21870 PF00072 Response regulator receiver domain AMPC_21880 PF13280 WYL domain AMPC_21880 PF08279 HTH domain AMPC_21900 PF06335 Protein of unknown function (DUF1054) AMPC_21920 PF13426 PAS domain AMPC_21920 PF00989 PAS fold AMPC_21920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_21920 PF13188 PAS domain AMPC_21920 PF00512 His Kinase A (phospho-acceptor) domain AMPC_21930 PF00675 Insulinase (Peptidase family M16) AMPC_21930 PF05193 Peptidase M16 inactive domain AMPC_21960 PF02567 Phenazine biosynthesis-like protein AMPC_21990 PF01678 Diaminopimelate epimerase AMPC_22010 PF07687 Peptidase dimerisation domain AMPC_22010 PF01546 Peptidase family M20/M25/M40 AMPC_22030 PF04851 Type III restriction enzyme, res subunit AMPC_22030 PF18339 RapA N-terminal Tudor like domain 1 AMPC_22030 PF00271 Helicase conserved C-terminal domain AMPC_22030 PF12137 RNA polymerase recycling family C-terminal AMPC_22030 PF18337 RapA N-terminal Tudor like domain AMPC_22090 PF05567 Neisseria PilC beta-propeller domain AMPC_22130 PF04055 Radical SAM superfamily AMPC_22150 PF00582 Universal stress protein family AMPC_22180 PF00484 Carbonic anhydrase AMPC_22190 PF01584 CheW-like domain AMPC_22200 PF00072 Response regulator receiver domain AMPC_22200 PF01339 CheB methylesterase AMPC_22210 PF03705 CheR methyltransferase, all-alpha domain AMPC_22210 PF01739 CheR methyltransferase, SAM binding domain AMPC_22220 PF02203 Tar ligand binding domain homologue AMPC_22220 PF00672 HAMP domain AMPC_22220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMPC_22230 PF01584 CheW-like domain AMPC_22230 PF02895 Signal transducing histidine kinase, homodimeric domain AMPC_22230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_22230 PF01627 Hpt domain AMPC_22230 PF09078 CheY binding AMPC_22240 PF03975 CheD chemotactic sensory transduction AMPC_22260 PF00486 Transcriptional regulatory protein, C terminal AMPC_22260 PF00072 Response regulator receiver domain AMPC_22290 PF00072 Response regulator receiver domain AMPC_22310 PF00999 Sodium/hydrogen exchanger family AMPC_22340 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMPC_22350 PF00873 AcrB/AcrD/AcrF family AMPC_22360 PF00209 Sodium:neurotransmitter symporter family AMPC_22370 PF03144 Elongation factor Tu domain 2 AMPC_22370 PF16658 Class II release factor RF3, C-terminal domain AMPC_22370 PF00009 Elongation factor Tu GTP binding domain AMPC_22380 PF04264 YceI-like domain AMPC_22390 PF01641 SelR domain AMPC_22410 PF00365 Phosphofructokinase AMPC_22420 PF07690 Major Facilitator Superfamily AMPC_22430 PF04264 YceI-like domain AMPC_22440 PF01709 Transcriptional regulator AMPC_22450 PF11999 Protein of unknown function (DUF3494) AMPC_22450 PF02368 Bacterial Ig-like domain (group 2) AMPC_22490 PF00392 Bacterial regulatory proteins, gntR family AMPC_22490 PF00155 Aminotransferase class I and II AMPC_22500 PF03313 Serine dehydratase alpha chain AMPC_22500 PF03315 Serine dehydratase beta chain AMPC_22530 PF03601 Conserved hypothetical protein 698 AMPC_22550 PF13247 4Fe-4S dicluster domain AMPC_22550 PF00037 4Fe-4S binding domain AMPC_22560 PF01568 Molydopterin dinucleotide binding domain AMPC_22560 PF00384 Molybdopterin oxidoreductase AMPC_22560 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMPC_22570 PF02954 Bacterial regulatory protein, Fis family AMPC_22570 PF06490 Flagellar regulatory protein FleQ AMPC_22570 PF00158 Sigma-54 interaction domain AMPC_22590 PF03734 L,D-transpeptidase catalytic domain AMPC_22590 PF01471 Putative peptidoglycan binding domain AMPC_22610 PF00990 Diguanylate cyclase, GGDEF domain AMPC_22640 PF01925 Sulfite exporter TauE/SafE AMPC_22660 PF03060 Nitronate monooxygenase AMPC_22670 PF13458 Periplasmic binding protein AMPC_22680 PF02653 Branched-chain amino acid transport system / permease component AMPC_22690 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMPC_22690 PF00005 ABC transporter AMPC_22700 PF00005 ABC transporter AMPC_22720 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AMPC_22720 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal AMPC_22730 PF13247 4Fe-4S dicluster domain AMPC_22740 PF03916 Polysulphide reductase, NrfD AMPC_22750 PF00374 Nickel-dependent hydrogenase AMPC_22760 PF01750 Hydrogenase maturation protease AMPC_22770 PF01300 Telomere recombination AMPC_22770 PF07503 HypF finger AMPC_22770 PF17788 HypF Kae1-like domain AMPC_22770 PF00708 Acylphosphatase AMPC_22780 PF01455 HupF/HypC family AMPC_22790 PF01924 Hydrogenase formation hypA family AMPC_22800 PF00586 AIR synthase related protein, N-terminal domain AMPC_22800 PF02769 AIR synthase related protein, C-terminal domain AMPC_22810 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AMPC_22820 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMPC_22860 PF00155 Aminotransferase class I and II AMPC_22880 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMPC_22890 PF01553 Acyltransferase AMPC_22900 PF01425 Amidase AMPC_22950 PF03949 Malic enzyme, NAD binding domain AMPC_22950 PF00390 Malic enzyme, N-terminal domain AMPC_22950 PF01515 Phosphate acetyl/butaryl transferase AMPC_23000 PF00005 ABC transporter AMPC_23000 PF12704 MacB-like periplasmic core domain AMPC_23020 PF00005 ABC transporter AMPC_23040 PF01713 Smr domain AMPC_23060 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AMPC_23070 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMPC_23070 PF03129 Anticodon binding domain AMPC_23070 PF04073 Aminoacyl-tRNA editing domain AMPC_23110 PF00005 ABC transporter AMPC_23120 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMPC_23120 PF00005 ABC transporter AMPC_23130 PF02653 Branched-chain amino acid transport system / permease component AMPC_23140 PF02653 Branched-chain amino acid transport system / permease component AMPC_23150 PF13458 Periplasmic binding protein AMPC_23180 PF04551 GcpE protein AMPC_23190 PF13462 Thioredoxin AMPC_23190 PF06965 Na+/H+ antiporter 1 AMPC_23210 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMPC_23220 PF01967 MoaC family AMPC_23270 PF00132 Bacterial transferase hexapeptide (six repeats) AMPC_23270 PF14602 Hexapeptide repeat of succinyl-transferase AMPC_23270 PF12804 MobA-like NTP transferase domain AMPC_23420 PF00072 Response regulator receiver domain AMPC_23420 PF13188 PAS domain AMPC_23420 PF08448 PAS fold AMPC_23420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_23420 PF00512 His Kinase A (phospho-acceptor) domain AMPC_23750 PF01380 SIS domain AMPC_23760 PF02834 LigT like Phosphoesterase AMPC_23780 PF00154 recA bacterial DNA recombination protein AMPC_23800 PF02911 Formyl transferase, C-terminal domain AMPC_23800 PF00551 Formyl transferase AMPC_23810 PF01029 NusB family AMPC_23810 PF01189 16S rRNA methyltransferase RsmB/F AMPC_23830 PF00158 Sigma-54 interaction domain AMPC_23830 PF00072 Response regulator receiver domain AMPC_23830 PF02954 Bacterial regulatory protein, Fis family AMPC_23850 PF00512 His Kinase A (phospho-acceptor) domain AMPC_23850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_23890 PF00326 Prolyl oligopeptidase family AMPC_23890 PF07676 WD40-like Beta Propeller Repeat AMPC_23890 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AMPC_23900 PF01281 Ribosomal protein L9, N-terminal domain AMPC_23900 PF03948 Ribosomal protein L9, C-terminal domain AMPC_23910 PF01084 Ribosomal protein S18 AMPC_23920 PF01250 Ribosomal protein S6 AMPC_23930 PF01195 Peptidyl-tRNA hydrolase AMPC_23940 PF01386 Ribosomal L25p family AMPC_23940 PF14693 Ribosomal protein TL5, C-terminal domain AMPC_23950 PF14572 Phosphoribosyl synthetase-associated domain AMPC_23950 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AMPC_23960 PF04026 SpoVG AMPC_23970 PF00288 GHMP kinases N terminal domain AMPC_23970 PF08544 GHMP kinases C terminal AMPC_23980 PF06470 SMC proteins Flexible Hinge Domain AMPC_23980 PF02463 RecF/RecN/SMC N terminal domain AMPC_23990 PF04073 Aminoacyl-tRNA editing domain AMPC_24010 PF00156 Phosphoribosyl transferase domain AMPC_24070 PF07690 Major Facilitator Superfamily AMPC_24080 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AMPC_24080 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AMPC_24090 PF08323 Starch synthase catalytic domain AMPC_24090 PF00534 Glycosyl transferases group 1 AMPC_24110 PF00834 Ribulose-phosphate 3 epimerase family AMPC_24120 PF03330 Lytic transglycolase AMPC_24130 PF03167 Uracil DNA glycosylase superfamily AMPC_24150 PF01794 Ferric reductase like transmembrane component AMPC_24160 PF00174 Oxidoreductase molybdopterin binding domain AMPC_24190 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AMPC_24190 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AMPC_24220 PF00873 AcrB/AcrD/AcrF family AMPC_24230 PF13533 Biotin-lipoyl like AMPC_24250 PF00005 ABC transporter AMPC_24250 PF12848 ABC transporter AMPC_24270 PF02926 THUMP domain AMPC_24270 PF01170 Putative RNA methylase family UPF0020 AMPC_24280 PF00005 ABC transporter AMPC_24290 PF00528 Binding-protein-dependent transport system inner membrane component AMPC_24310 PF01569 PAP2 superfamily AMPC_24340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_24340 PF00512 His Kinase A (phospho-acceptor) domain AMPC_24350 PF00512 His Kinase A (phospho-acceptor) domain AMPC_24350 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMPC_24350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_24350 PF00672 HAMP domain AMPC_24350 PF01627 Hpt domain AMPC_24350 PF00072 Response regulator receiver domain AMPC_24390 PF01895 PhoU domain AMPC_24400 PF00005 ABC transporter AMPC_24410 PF00528 Binding-protein-dependent transport system inner membrane component AMPC_24420 PF00528 Binding-protein-dependent transport system inner membrane component AMPC_24430 PF12849 PBP superfamily domain AMPC_24450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_24450 PF00512 His Kinase A (phospho-acceptor) domain AMPC_24450 PF00989 PAS fold AMPC_24450 PF16736 Single Cache-like AMPC_24460 PF00072 Response regulator receiver domain AMPC_24460 PF00486 Transcriptional regulatory protein, C terminal AMPC_24470 PF17158 Membrane-associated sensor, integral membrane domain AMPC_24470 PF00990 Diguanylate cyclase, GGDEF domain AMPC_24480 PF01170 Putative RNA methylase family UPF0020 AMPC_24480 PF02926 THUMP domain AMPC_24480 PF10672 S-adenosylmethionine-dependent methyltransferase AMPC_24490 PF07732 Multicopper oxidase AMPC_24490 PF00394 Multicopper oxidase AMPC_24490 PF07731 Multicopper oxidase AMPC_24500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_24500 PF00512 His Kinase A (phospho-acceptor) domain AMPC_24500 PF08448 PAS fold AMPC_24500 PF13188 PAS domain AMPC_24500 PF00072 Response regulator receiver domain AMPC_24510 PF01596 O-methyltransferase AMPC_24560 PF00854 POT family AMPC_24570 PF00854 POT family AMPC_24590 PF04241 Protein of unknown function (DUF423) AMPC_24600 PF01329 Pterin 4 alpha carbinolamine dehydratase AMPC_24610 PF00149 Calcineurin-like phosphoesterase AMPC_24620 PF02146 Sir2 family AMPC_24630 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMPC_24630 PF00437 Type II/IV secretion system protein AMPC_24640 PF02472 Biopolymer transport protein ExbD/TolR AMPC_24650 PF01618 MotA/TolQ/ExbB proton channel family AMPC_24670 PF01053 Cys/Met metabolism PLP-dependent enzyme AMPC_24720 PF08534 Redoxin AMPC_24760 PF00512 His Kinase A (phospho-acceptor) domain AMPC_24760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_24770 PF00905 Penicillin binding protein transpeptidase domain AMPC_24780 PF00391 PEP-utilising enzyme, mobile domain AMPC_24780 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AMPC_24780 PF02896 PEP-utilising enzyme, TIM barrel domain AMPC_24840 PF13462 Thioredoxin AMPC_24840 PF06965 Na+/H+ antiporter 1 AMPC_24860 PF00403 Heavy-metal-associated domain AMPC_24910 PF00270 DEAD/DEAH box helicase AMPC_24910 PF08494 DEAD/H associated AMPC_24910 PF00271 Helicase conserved C-terminal domain AMPC_24920 PF00360 Phytochrome region AMPC_24920 PF08446 PAS fold AMPC_24920 PF00512 His Kinase A (phospho-acceptor) domain AMPC_24920 PF01590 GAF domain AMPC_24920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_24950 PF04389 Peptidase family M28 AMPC_24950 PF04151 Bacterial pre-peptidase C-terminal domain AMPC_24960 PF02261 Aspartate decarboxylase AMPC_24970 PF00425 chorismate binding enzyme AMPC_24970 PF04715 Anthranilate synthase component I, N terminal region AMPC_24980 PF00117 Glutamine amidotransferase class-I AMPC_24990 PF00591 Glycosyl transferase family, a/b domain AMPC_24990 PF02885 Glycosyl transferase family, helical bundle domain AMPC_25000 PF00218 Indole-3-glycerol phosphate synthase AMPC_25010 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AMPC_25020 PF00291 Pyridoxal-phosphate dependent enzyme AMPC_25030 PF00290 Tryptophan synthase alpha chain AMPC_25050 PF03552 Cellulose synthase AMPC_25050 PF00535 Glycosyl transferase family 2 AMPC_25050 PF07238 PilZ domain AMPC_25070 PF00211 Adenylate and Guanylate cyclase catalytic domain AMPC_25070 PF00069 Protein kinase domain AMPC_25110 PF00923 Transaldolase/Fructose-6-phosphate aldolase AMPC_25120 PF01380 SIS domain AMPC_25120 PF00571 CBS domain AMPC_25130 PF00596 Class II Aldolase and Adducin N-terminal domain AMPC_25140 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AMPC_25150 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMPC_25160 PF05173 Dihydrodipicolinate reductase, C-terminus AMPC_25160 PF01113 Dihydrodipicolinate reductase, N-terminus AMPC_25170 PF00701 Dihydrodipicolinate synthetase family AMPC_25180 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMPC_25180 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMPC_25200 PF14698 Argininosuccinate lyase C-terminal AMPC_25200 PF00206 Lyase AMPC_25250 PF01841 Transglutaminase-like superfamily AMPC_25260 PF07670 Nucleoside recognition AMPC_25270 PF07670 Nucleoside recognition AMPC_25290 PF13188 PAS domain AMPC_25290 PF08448 PAS fold AMPC_25290 PF00512 His Kinase A (phospho-acceptor) domain AMPC_25290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_25290 PF00072 Response regulator receiver domain AMPC_25330 PF04542 Sigma-70 region 2 AMPC_25330 PF00140 Sigma-70 factor, region 1.2 AMPC_25330 PF04545 Sigma-70, region 4 AMPC_25370 PF14489 QueF-like protein AMPC_25380 PF01757 Acyltransferase family AMPC_25410 PF13439 Glycosyltransferase Family 4 AMPC_25410 PF00534 Glycosyl transferases group 1 AMPC_25420 PF02789 Cytosol aminopeptidase family, N-terminal domain AMPC_25420 PF00883 Cytosol aminopeptidase family, catalytic domain AMPC_25450 PF01432 Peptidase family M3 AMPC_25460 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMPC_25490 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMPC_25500 PF02446 4-alpha-glucanotransferase AMPC_25510 PF00128 Alpha amylase, catalytic domain AMPC_25520 PF17862 AAA+ lid domain AMPC_25520 PF01434 Peptidase family M41 AMPC_25520 PF00004 ATPase family associated with various cellular activities (AAA) AMPC_25580 PF03631 Virulence factor BrkB AMPC_25590 PF00313 'Cold-shock' DNA-binding domain AMPC_25610 PF04055 Radical SAM superfamily AMPC_25620 PF00456 Transketolase, thiamine diphosphate binding domain AMPC_25620 PF02780 Transketolase, C-terminal domain AMPC_25620 PF02779 Transketolase, pyrimidine binding domain AMPC_25660 PF02540 NAD synthase AMPC_25660 PF00795 Carbon-nitrogen hydrolase AMPC_25670 PF03976 Polyphosphate kinase 2 (PPK2) AMPC_25690 PF01765 Ribosome recycling factor AMPC_25700 PF00696 Amino acid kinase family AMPC_25710 PF12627 Probable RNA and SrmB- binding site of polymerase A AMPC_25710 PF01743 Poly A polymerase head domain AMPC_25710 PF12626 Polymerase A arginine-rich C-terminus AMPC_25720 PF01351 Ribonuclease HII AMPC_25730 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMPC_25730 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AMPC_25730 PF06827 Zinc finger found in FPG and IleRS AMPC_25740 PF01189 16S rRNA methyltransferase RsmB/F AMPC_25740 PF01029 NusB family AMPC_25750 PF00578 AhpC/TSA family AMPC_25780 PF00318 Ribosomal protein S2 AMPC_25790 PF00889 Elongation factor TS AMPC_25810 PF00593 TonB dependent receptor AMPC_25830 PF01618 MotA/TolQ/ExbB proton channel family AMPC_25840 PF02472 Biopolymer transport protein ExbD/TolR AMPC_25850 PF02472 Biopolymer transport protein ExbD/TolR AMPC_25860 PF01479 S4 domain AMPC_25860 PF00849 RNA pseudouridylate synthase AMPC_25870 PF00365 Phosphofructokinase AMPC_25900 PF01985 CRS1 / YhbY (CRM) domain AMPC_25910 PF00226 DnaJ domain AMPC_25910 PF01556 DnaJ C terminal domain AMPC_25910 PF00684 DnaJ central domain AMPC_25920 PF01642 Methylmalonyl-CoA mutase AMPC_25920 PF02310 B12 binding domain AMPC_25940 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMPC_25940 PF00364 Biotin-requiring enzyme AMPC_25940 PF00289 Biotin carboxylase, N-terminal domain AMPC_25940 PF18140 Propionyl-coenzyme A carboxylase BT domain AMPC_25940 PF02785 Biotin carboxylase C-terminal domain AMPC_25950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_25990 PF03060 Nitronate monooxygenase AMPC_26010 PF01039 Carboxyl transferase domain AMPC_26030 PF04452 RNA methyltransferase AMPC_26050 PF04055 Radical SAM superfamily AMPC_26050 PF06969 HemN C-terminal domain AMPC_26100 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AMPC_26100 PF01676 Metalloenzyme superfamily AMPC_26150 PF02142 MGS-like domain AMPC_26160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMPC_26160 PF00672 HAMP domain AMPC_26160 PF02203 Tar ligand binding domain homologue AMPC_26170 PF02590 Predicted SPOUT methyltransferase AMPC_26200 PF04542 Sigma-70 region 2 AMPC_26200 PF08281 Sigma-70, region 4 AMPC_26220 PF00149 Calcineurin-like phosphoesterase AMPC_26240 PF01432 Peptidase family M3 AMPC_26240 PF08439 Oligopeptidase F AMPC_26270 PF00501 AMP-binding enzyme AMPC_26270 PF14535 AMP-binding enzyme C-terminal domain AMPC_26330 PF10371 Domain of unknown function AMPC_26330 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AMPC_26330 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AMPC_26330 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AMPC_26330 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMPC_26360 PF00171 Aldehyde dehydrogenase family AMPC_26370 PF00696 Amino acid kinase family AMPC_26370 PF01472 PUA domain AMPC_26380 PF00512 His Kinase A (phospho-acceptor) domain AMPC_26380 PF00072 Response regulator receiver domain AMPC_26380 PF08448 PAS fold AMPC_26380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_26380 PF13188 PAS domain AMPC_26430 PF16360 GTP-binding GTPase Middle Region AMPC_26430 PF13167 GTP-binding GTPase N-terminal AMPC_26430 PF01926 50S ribosome-binding GTPase AMPC_26440 PF00282 Pyridoxal-dependent decarboxylase conserved domain AMPC_26450 PF06865 Pyrimidine/purine nucleoside phosphorylase AMPC_26460 PF00892 EamA-like transporter family AMPC_26470 PF00512 His Kinase A (phospho-acceptor) domain AMPC_26470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_26480 PF03169 OPT oligopeptide transporter protein AMPC_26540 PF00512 His Kinase A (phospho-acceptor) domain AMPC_26540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_26560 PF09861 Lactate racemase N-terminal domain AMPC_26600 PF00849 RNA pseudouridylate synthase AMPC_26610 PF00535 Glycosyl transferase family 2 AMPC_26620 PF01220 Dehydroquinase class II AMPC_26630 PF01761 3-dehydroquinate synthase AMPC_26640 PF01202 Shikimate kinase AMPC_26650 PF01264 Chorismate synthase AMPC_26660 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AMPC_26660 PF08501 Shikimate dehydrogenase substrate binding domain AMPC_26670 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMPC_26690 PF07736 Chorismate mutase type I AMPC_26700 PF01230 HIT domain AMPC_26710 PF02580 D-Tyr-tRNA(Tyr) deacylase AMPC_26720 PF04958 Arginine N-succinyltransferase beta subunit AMPC_26740 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMPC_26750 PF01597 Glycine cleavage H-protein AMPC_26770 PF00989 PAS fold AMPC_26770 PF00672 HAMP domain AMPC_26770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_26770 PF18698 Histidine kinase sensor domain AMPC_26770 PF00512 His Kinase A (phospho-acceptor) domain AMPC_26780 PF00696 Amino acid kinase family AMPC_26790 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMPC_26790 PF02774 Semialdehyde dehydrogenase, dimerisation domain AMPC_26820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_26820 PF00512 His Kinase A (phospho-acceptor) domain AMPC_26830 PF00465 Iron-containing alcohol dehydrogenase AMPC_26840 PF00512 His Kinase A (phospho-acceptor) domain AMPC_26840 PF13188 PAS domain AMPC_26840 PF08448 PAS fold AMPC_26840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_26840 PF00072 Response regulator receiver domain AMPC_26850 PF00440 Bacterial regulatory proteins, tetR family AMPC_26850 PF16859 Tetracyclin repressor-like, C-terminal domain AMPC_26870 PF00529 HlyD membrane-fusion protein of T1SS AMPC_26870 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMPC_26880 PF00873 AcrB/AcrD/AcrF family AMPC_26890 PF00582 Universal stress protein family AMPC_26930 PF00043 Glutathione S-transferase, C-terminal domain AMPC_26930 PF13417 Glutathione S-transferase, N-terminal domain AMPC_26940 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AMPC_26940 PF05221 S-adenosyl-L-homocysteine hydrolase AMPC_26960 PF01103 Surface antigen AMPC_26960 PF17243 POTRA domain TamA domain 1 AMPC_26980 PF05670 NFACT protein RNA binding domain AMPC_27000 PF00480 ROK family AMPC_27010 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMPC_27010 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMPC_27010 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMPC_27010 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMPC_27020 PF01050 Mannose-6-phosphate isomerase AMPC_27020 PF00483 Nucleotidyl transferase AMPC_27030 PF00293 NUDIX domain AMPC_27040 PF02673 Bacitracin resistance protein BacA AMPC_27050 PF02773 S-adenosylmethionine synthetase, C-terminal domain AMPC_27050 PF02772 S-adenosylmethionine synthetase, central domain AMPC_27050 PF00438 S-adenosylmethionine synthetase, N-terminal domain AMPC_27060 PF02896 PEP-utilising enzyme, TIM barrel domain AMPC_27060 PF05524 PEP-utilising enzyme, N-terminal AMPC_27060 PF00391 PEP-utilising enzyme, mobile domain AMPC_27070 PF00381 PTS HPr component phosphorylation site AMPC_27080 PF03613 PTS system mannose/fructose/sorbose family IID component AMPC_27100 PF03830 PTS system sorbose subfamily IIB component AMPC_27110 PF03610 PTS system fructose IIA component AMPC_27110 PF03830 PTS system sorbose subfamily IIB component AMPC_27120 PF03668 P-loop ATPase protein family AMPC_27130 PF07475 HPr Serine kinase C-terminal domain AMPC_27130 PF02603 HPr Serine kinase N terminus AMPC_27150 PF00072 Response regulator receiver domain AMPC_27190 PF00817 impB/mucB/samB family AMPC_27190 PF11799 impB/mucB/samB family C-terminal domain AMPC_27210 PF01266 FAD dependent oxidoreductase AMPC_27280 PF00675 Insulinase (Peptidase family M16) AMPC_27280 PF05193 Peptidase M16 inactive domain AMPC_27320 PF17863 AAA lid domain AMPC_27320 PF07726 ATPase family associated with various cellular activities (AAA) AMPC_27350 PF04542 Sigma-70 region 2 AMPC_27350 PF08281 Sigma-70, region 4 AMPC_27390 PF00394 Multicopper oxidase AMPC_27390 PF07732 Multicopper oxidase AMPC_27390 PF07731 Multicopper oxidase AMPC_27400 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AMPC_27400 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMPC_27460 PF13614 AAA domain AMPC_27460 PF13807 G-rich domain on putative tyrosine kinase AMPC_27460 PF02706 Chain length determinant protein AMPC_27470 PF00953 Glycosyl transferase family 4 AMPC_27530 PF13439 Glycosyltransferase Family 4 AMPC_27530 PF00534 Glycosyl transferases group 1 AMPC_27540 PF13439 Glycosyltransferase Family 4 AMPC_27540 PF00534 Glycosyl transferases group 1 AMPC_27580 PF01757 Acyltransferase family AMPC_27610 PF02563 Polysaccharide biosynthesis/export protein AMPC_27610 PF10531 SLBB domain AMPC_27610 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AMPC_27620 PF01451 Low molecular weight phosphotyrosine protein phosphatase AMPC_27640 PF00535 Glycosyl transferase family 2 AMPC_27660 PF00535 Glycosyl transferase family 2 AMPC_27720 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMPC_27720 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMPC_27720 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMPC_27730 PF01040 UbiA prenyltransferase family AMPC_27740 PF04030 D-arabinono-1,4-lactone oxidase AMPC_27740 PF01565 FAD binding domain AMPC_27790 PF03030 Inorganic H+ pyrophosphatase AMPC_27820 PF01618 MotA/TolQ/ExbB proton channel family AMPC_27840 PF08448 PAS fold AMPC_27840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_27840 PF13188 PAS domain AMPC_27840 PF00072 Response regulator receiver domain AMPC_27840 PF00512 His Kinase A (phospho-acceptor) domain AMPC_27850 PF01969 Protein of unknown function DUF111 AMPC_27860 PF00731 AIR carboxylase AMPC_27880 PF01584 CheW-like domain AMPC_27880 PF01627 Hpt domain AMPC_27880 PF07194 P2 response regulator binding domain AMPC_27880 PF02895 Signal transducing histidine kinase, homodimeric domain AMPC_27880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_27890 PF00072 Response regulator receiver domain AMPC_27900 PF01584 CheW-like domain AMPC_27910 PF02743 Cache domain AMPC_27910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMPC_27910 PF00672 HAMP domain AMPC_27920 PF02769 AIR synthase related protein, C-terminal domain AMPC_27920 PF00586 AIR synthase related protein, N-terminal domain AMPC_27930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_27930 PF00512 His Kinase A (phospho-acceptor) domain AMPC_27930 PF00989 PAS fold AMPC_27940 PF00025 ADP-ribosylation factor family AMPC_27950 PF00512 His Kinase A (phospho-acceptor) domain AMPC_27950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_27960 PF04851 Type III restriction enzyme, res subunit AMPC_27960 PF13307 Helicase C-terminal domain AMPC_27990 PF00226 DnaJ domain AMPC_27990 PF01556 DnaJ C terminal domain AMPC_27990 PF00684 DnaJ central domain AMPC_28000 PF00012 Hsp70 protein AMPC_28010 PF01025 GrpE AMPC_28020 PF01628 HrcA protein C terminal domain AMPC_28020 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding AMPC_28040 PF17757 UvrB interaction domain AMPC_28040 PF03461 TRCF domain AMPC_28040 PF00271 Helicase conserved C-terminal domain AMPC_28040 PF02559 CarD-like/TRCF domain AMPC_28040 PF00270 DEAD/DEAH box helicase AMPC_28050 PF00639 PPIC-type PPIASE domain AMPC_28060 PF00639 PPIC-type PPIASE domain AMPC_28060 PF09312 SurA N-terminal domain AMPC_28070 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AMPC_28080 PF01926 50S ribosome-binding GTPase AMPC_28080 PF06071 Protein of unknown function (DUF933) AMPC_28090 PF00430 ATP synthase B/B' CF(0) AMPC_28100 PF00137 ATP synthase subunit C AMPC_28110 PF00119 ATP synthase A chain AMPC_28140 PF00202 Aminotransferase class-III AMPC_28150 PF00521 DNA gyrase/topoisomerase IV, subunit A AMPC_28150 PF03989 DNA gyrase C-terminal domain, beta-propeller AMPC_28160 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AMPC_28160 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AMPC_28170 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMPC_28170 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMPC_28180 PF00231 ATP synthase AMPC_28190 PF00306 ATP synthase alpha/beta chain, C terminal domain AMPC_28190 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMPC_28190 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMPC_28200 PF00213 ATP synthase delta (OSCP) subunit AMPC_28210 PF00011 Hsp20/alpha crystallin family AMPC_28230 PF02195 ParB-like nuclease domain AMPC_28230 PF17762 HTH domain found in ParB protein AMPC_28240 PF13614 AAA domain AMPC_28260 PF02527 rRNA small subunit methyltransferase G AMPC_28290 PF02096 60Kd inner membrane protein AMPC_28290 PF14849 YidC periplasmic domain AMPC_28300 PF01809 Putative membrane protein insertion efficiency factor AMPC_28310 PF00825 Ribonuclease P AMPC_28320 PF00468 Ribosomal protein L34 AMPC_28330 PF00308 Bacterial dnaA protein AMPC_28330 PF08299 Bacterial dnaA protein helix-turn-helix AMPC_28330 PF11638 DnaA N-terminal domain AMPC_28340 PF00712 DNA polymerase III beta subunit, N-terminal domain AMPC_28340 PF02767 DNA polymerase III beta subunit, central domain AMPC_28340 PF02768 DNA polymerase III beta subunit, C-terminal domain AMPC_28350 PF02463 RecF/RecN/SMC N terminal domain AMPC_28360 PF00204 DNA gyrase B AMPC_28360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_28360 PF01751 Toprim domain AMPC_28360 PF00986 DNA gyrase B subunit, carboxyl terminus AMPC_28370 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMPC_28370 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMPC_28400 PF02754 Cysteine-rich domain AMPC_28400 PF13183 4Fe-4S dicluster domain AMPC_28440 PF08443 RimK-like ATP-grasp domain AMPC_28440 PF18030 RimK PreATP-grasp domain AMPC_28450 PF08264 Anticodon-binding domain of tRNA AMPC_28450 PF00133 tRNA synthetases class I (I, L, M and V) AMPC_28450 PF06827 Zinc finger found in FPG and IleRS AMPC_28460 PF01252 Signal peptidase (SPase) II AMPC_28470 PF01790 Prolipoprotein diacylglyceryl transferase AMPC_28520 PF13188 PAS domain AMPC_28520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_28520 PF00512 His Kinase A (phospho-acceptor) domain AMPC_28520 PF08448 PAS fold AMPC_28520 PF00072 Response regulator receiver domain AMPC_28530 PF00871 Acetokinase family AMPC_28550 PF01012 Electron transfer flavoprotein domain AMPC_28560 PF00766 Electron transfer flavoprotein FAD-binding domain AMPC_28560 PF01012 Electron transfer flavoprotein domain AMPC_28570 PF00753 Metallo-beta-lactamase superfamily AMPC_28590 PF04675 DNA ligase N terminus AMPC_28590 PF01068 ATP dependent DNA ligase domain AMPC_28590 PF04679 ATP dependent DNA ligase C terminal region AMPC_28600 PF00849 RNA pseudouridylate synthase AMPC_28610 PF00905 Penicillin binding protein transpeptidase domain AMPC_28610 PF00912 Transglycosylase AMPC_28610 PF17092 Penicillin-binding protein OB-like domain AMPC_28620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMPC_28630 PF00795 Carbon-nitrogen hydrolase AMPC_28650 PF02416 mttA/Hcf106 family AMPC_28660 PF00902 Sec-independent protein translocase protein (TatC) AMPC_28670 PF00330 Aconitase family (aconitate hydratase) AMPC_28680 PF00180 Isocitrate/isopropylmalate dehydrogenase AMPC_28700 PF00108 Thiolase, N-terminal domain AMPC_28700 PF02803 Thiolase, C-terminal domain AMPC_28710 PF00682 HMGL-like AMPC_28710 PF08502 LeuA allosteric (dimerisation) domain AMPC_28740 PF11842 Domain of unknown function (DUF3362) AMPC_28740 PF04055 Radical SAM superfamily AMPC_28740 PF08497 Radical SAM N-terminal AMPC_28760 PF00202 Aminotransferase class-III AMPC_28800 PF17820 PDZ domain AMPC_28800 PF13180 PDZ domain AMPC_28820 PF02581 Thiamine monophosphate synthase AMPC_28830 PF07722 Peptidase C26 AMPC_28840 PF08543 Phosphomethylpyrimidine kinase AMPC_28860 PF03796 DnaB-like helicase C terminal domain AMPC_28860 PF00772 DnaB-like helicase N terminal domain AMPC_28900 PF07690 Major Facilitator Superfamily AMPC_28910 PF02310 B12 binding domain AMPC_28910 PF02574 Homocysteine S-methyltransferase AMPC_28910 PF00809 Pterin binding enzyme AMPC_28910 PF02965 Vitamin B12 dependent methionine synthase, activation domain AMPC_28910 PF02607 B12 binding domain AMPC_28960 PF03631 Virulence factor BrkB AMPC_28990 PF07690 Major Facilitator Superfamily AMPC_29000 PF13533 Biotin-lipoyl like AMPC_29020 PF05175 Methyltransferase small domain AMPC_29020 PF07109 Magnesium-protoporphyrin IX methyltransferase C-terminus AMPC_29040 PF04055 Radical SAM superfamily AMPC_29040 PF18693 TRAM domain AMPC_29040 PF00919 Uncharacterized protein family UPF0004 AMPC_29070 PF00080 Copper/zinc superoxide dismutase (SODC) AMPC_29080 PF04461 Protein of unknown function (DUF520) AMPC_29090 PF17770 Ribonuclease J C-terminal domain AMPC_29090 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AMPC_29090 PF00753 Metallo-beta-lactamase superfamily AMPC_29100 PF13396 Phospholipase_D-nuclease N-terminal AMPC_29100 PF13091 PLD-like domain AMPC_29110 PF00580 UvrD/REP helicase N-terminal domain AMPC_29110 PF13361 UvrD-like helicase C-terminal domain AMPC_29130 PF00962 Adenosine/AMP deaminase AMPC_29150 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AMPC_29150 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMPC_29170 PF00483 Nucleotidyl transferase AMPC_29180 PF00933 Glycosyl hydrolase family 3 N terminal domain AMPC_29180 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMPC_29190 PF00072 Response regulator receiver domain AMPC_29190 PF00486 Transcriptional regulatory protein, C terminal AMPC_29200 PF03594 Benzoate membrane transport protein AMPC_29210 PF00892 EamA-like transporter family AMPC_29240 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMPC_29240 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMPC_29240 PF00205 Thiamine pyrophosphate enzyme, central domain AMPC_29250 PF00005 ABC transporter AMPC_29260 PF00005 ABC transporter AMPC_29260 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMPC_29270 PF02653 Branched-chain amino acid transport system / permease component AMPC_29270 PF11862 Domain of unknown function (DUF3382) AMPC_29280 PF02653 Branched-chain amino acid transport system / permease component AMPC_29290 PF13458 Periplasmic binding protein AMPC_29320 PF03591 AzlC protein AMPC_29340 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AMPC_29340 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AMPC_29350 PF00005 ABC transporter AMPC_29360 PF00005 ABC transporter AMPC_29360 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMPC_29370 PF11862 Domain of unknown function (DUF3382) AMPC_29370 PF02653 Branched-chain amino acid transport system / permease component AMPC_29380 PF02653 Branched-chain amino acid transport system / permease component AMPC_29390 PF13458 Periplasmic binding protein AMPC_29400 PF00171 Aldehyde dehydrogenase family AMPC_29410 PF01266 FAD dependent oxidoreductase AMPC_29420 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMPC_29420 PF17806 Sarcosine oxidase A3 domain AMPC_29440 PF00155 Aminotransferase class I and II AMPC_29440 PF00392 Bacterial regulatory proteins, gntR family AMPC_29460 PF00375 Sodium:dicarboxylate symporter family AMPC_29470 PF01810 LysE type translocator AMPC_29490 PF01810 LysE type translocator AMPC_29500 PF00155 Aminotransferase class I and II AMPC_29510 PF03180 NLPA lipoprotein AMPC_29520 PF00528 Binding-protein-dependent transport system inner membrane component AMPC_29530 PF09383 NIL domain AMPC_29530 PF00005 ABC transporter AMPC_29540 PF00005 ABC transporter AMPC_29550 PF00528 Binding-protein-dependent transport system inner membrane component AMPC_29560 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMPC_29590 PF01515 Phosphate acetyl/butaryl transferase AMPC_29600 PF00871 Acetokinase family AMPC_29620 PF00120 Glutamine synthetase, catalytic domain AMPC_29620 PF03951 Glutamine synthetase, beta-Grasp domain AMPC_29630 PF00072 Response regulator receiver domain AMPC_29630 PF00158 Sigma-54 interaction domain AMPC_29630 PF02954 Bacterial regulatory protein, Fis family AMPC_29640 PF02678 Pirin AMPC_29640 PF17954 Quercetinase C-terminal cupin domain AMPC_29650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_29650 PF00512 His Kinase A (phospho-acceptor) domain AMPC_29650 PF00989 PAS fold AMPC_29660 PF00543 Nitrogen regulatory protein P-II AMPC_29690 PF16123 Hydroxyacylglutathione hydrolase C-terminus AMPC_29690 PF00753 Metallo-beta-lactamase superfamily AMPC_29700 PF00557 Metallopeptidase family M24 AMPC_29700 PF01321 Creatinase/Prolidase N-terminal domain AMPC_29710 PF00224 Pyruvate kinase, barrel domain AMPC_29710 PF02887 Pyruvate kinase, alpha/beta domain AMPC_29720 PF02245 Methylpurine-DNA glycosylase (MPG) AMPC_29730 PF04055 Radical SAM superfamily AMPC_29780 PF08281 Sigma-70, region 4 AMPC_29780 PF04542 Sigma-70 region 2 AMPC_29790 PF01384 Phosphate transporter family AMPC_29830 PF00488 MutS domain V AMPC_29830 PF01713 Smr domain AMPC_29840 PF08448 PAS fold AMPC_29840 PF00512 His Kinase A (phospho-acceptor) domain AMPC_29840 PF00072 Response regulator receiver domain AMPC_29840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_29840 PF13188 PAS domain AMPC_29870 PF12706 Beta-lactamase superfamily domain AMPC_29880 PF00586 AIR synthase related protein, N-terminal domain AMPC_29880 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AMPC_29880 PF02769 AIR synthase related protein, C-terminal domain AMPC_29920 PF00486 Transcriptional regulatory protein, C terminal AMPC_29920 PF00072 Response regulator receiver domain AMPC_29930 PF17048 Neutral/alkaline non-lysosomal ceramidase, C-terminal AMPC_29930 PF04734 Neutral/alkaline non-lysosomal ceramidase, N-terminal AMPC_29940 PF00156 Phosphoribosyl transferase domain AMPC_29960 PF00216 Bacterial DNA-binding protein AMPC_29980 PF01584 CheW-like domain AMPC_29980 PF01627 Hpt domain AMPC_29980 PF00072 Response regulator receiver domain AMPC_29980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_30000 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMPC_30000 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AMPC_30000 PF10531 SLBB domain AMPC_30010 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AMPC_30020 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AMPC_30050 PF02660 Glycerol-3-phosphate acyltransferase AMPC_30070 PF00005 ABC transporter AMPC_30070 PF00664 ABC transporter transmembrane region AMPC_30100 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AMPC_30100 PF17854 FtsK alpha domain AMPC_30100 PF09397 Ftsk gamma domain AMPC_30100 PF01580 FtsK/SpoIIIE family AMPC_30120 PF02686 Glu-tRNAGln amidotransferase C subunit AMPC_30130 PF01425 Amidase AMPC_30150 PF02637 GatB domain AMPC_30150 PF02934 GatB/GatE catalytic domain AMPC_30170 PF01008 Initiation factor 2 subunit family AMPC_30180 PF07885 Ion channel AMPC_30180 PF17655 Inward rectifier potassium channel C-terminal domain AMPC_30200 PF00829 Ribosomal prokaryotic L21 protein AMPC_30210 PF01016 Ribosomal L27 protein AMPC_30220 PF01926 50S ribosome-binding GTPase AMPC_30220 PF01018 GTP1/OBG AMPC_30230 PF00588 SpoU rRNA Methylase family AMPC_30230 PF12105 SpoU, rRNA methylase, C-terminal AMPC_30250 PF00849 RNA pseudouridylate synthase AMPC_30250 PF01479 S4 domain AMPC_30270 PF02350 UDP-N-acetylglucosamine 2-epimerase AMPC_30280 PF02348 Cytidylyltransferase AMPC_30290 PF06418 CTP synthase N-terminus AMPC_30290 PF00117 Glutamine amidotransferase class-I AMPC_30300 PF00793 DAHP synthetase I family AMPC_30350 PF00005 ABC transporter AMPC_30360 PF00309 Sigma-54 factor, Activator interacting domain (AID) AMPC_30360 PF04963 Sigma-54 factor, core binding domain AMPC_30360 PF04552 Sigma-54, DNA binding domain AMPC_30370 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus AMPC_30370 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AMPC_30380 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMPC_30390 PF17806 Sarcosine oxidase A3 domain AMPC_30390 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMPC_30390 PF01571 Aminomethyltransferase folate-binding domain AMPC_30390 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMPC_30400 PF01206 Sulfurtransferase TusA AMPC_30420 PF00374 Nickel-dependent hydrogenase AMPC_30450 PF10502 Signal peptidase, peptidase S26 AMPC_30460 PF12704 MacB-like periplasmic core domain AMPC_30460 PF02687 FtsX-like permease family AMPC_30460 PF00005 ABC transporter AMPC_30470 PF12704 MacB-like periplasmic core domain AMPC_30470 PF00005 ABC transporter AMPC_30470 PF02687 FtsX-like permease family AMPC_30480 PF00005 ABC transporter AMPC_30480 PF02687 FtsX-like permease family AMPC_30480 PF12704 MacB-like periplasmic core domain AMPC_30520 PF07681 DoxX AMPC_30540 PF00528 Binding-protein-dependent transport system inner membrane component AMPC_30550 PF00005 ABC transporter AMPC_30550 PF03459 TOBE domain AMPC_30570 PF00719 Inorganic pyrophosphatase AMPC_30580 PF02541 Ppx/GppA phosphatase family AMPC_30610 PF00654 Voltage gated chloride channel AMPC_30660 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMPC_30670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_30670 PF00512 His Kinase A (phospho-acceptor) domain AMPC_30680 PF00486 Transcriptional regulatory protein, C terminal AMPC_30680 PF00072 Response regulator receiver domain AMPC_30700 PF00583 Acetyltransferase (GNAT) family AMPC_30750 PF07690 Major Facilitator Superfamily AMPC_30760 PF04452 RNA methyltransferase AMPC_30770 PF08448 PAS fold AMPC_30770 PF16767 Sensor domain of alginate biosynthesis sensor protein KinB AMPC_30770 PF00672 HAMP domain AMPC_30770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_30770 PF00512 His Kinase A (phospho-acceptor) domain AMPC_30790 PF18152 DAHP synthase ferredoxin-like domain AMPC_30790 PF00793 DAHP synthetase I family AMPC_30840 PF03738 Glutathionylspermidine synthase preATP-grasp AMPC_30870 PF01402 Ribbon-helix-helix protein, copG family AMPC_30870 PF08753 NikR C terminal nickel binding domain AMPC_30880 PF01638 HxlR-like helix-turn-helix AMPC_30890 PF05368 NmrA-like family AMPC_30900 PF00005 ABC transporter AMPC_30920 PF01891 Cobalt uptake substrate-specific transmembrane region AMPC_30920 PF13190 PDGLE domain AMPC_30940 PF01960 ArgJ family AMPC_30970 PF00005 ABC transporter AMPC_30970 PF12848 ABC transporter AMPC_31000 PF00920 Dehydratase family AMPC_31020 PF13090 Polyphosphate kinase C-terminal domain 2 AMPC_31020 PF13089 Polyphosphate kinase N-terminal domain AMPC_31020 PF17941 Polyphosphate kinase C-terminal domain 1 AMPC_31020 PF02503 Polyphosphate kinase middle domain AMPC_31060 PF00512 His Kinase A (phospho-acceptor) domain AMPC_31060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_31060 PF16736 Single Cache-like AMPC_31060 PF00989 PAS fold AMPC_31070 PF00512 His Kinase A (phospho-acceptor) domain AMPC_31070 PF00672 HAMP domain AMPC_31070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_31080 PF00072 Response regulator receiver domain AMPC_31080 PF00486 Transcriptional regulatory protein, C terminal AMPC_31100 PF00263 Bacterial type II and III secretion system protein AMPC_31100 PF03958 Bacterial type II/III secretion system short domain AMPC_31110 PF00072 Response regulator receiver domain AMPC_31110 PF00512 His Kinase A (phospho-acceptor) domain AMPC_31110 PF08448 PAS fold AMPC_31110 PF13188 PAS domain AMPC_31110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_31140 PF00180 Isocitrate/isopropylmalate dehydrogenase AMPC_31220 PF09335 SNARE associated Golgi protein AMPC_31240 PF00578 AhpC/TSA family AMPC_31250 PF01841 Transglutaminase-like superfamily AMPC_31300 PF00012 Hsp70 protein AMPC_31310 PF02321 Outer membrane efflux protein AMPC_31320 PF00005 ABC transporter AMPC_31320 PF02687 FtsX-like permease family AMPC_31320 PF12704 MacB-like periplasmic core domain AMPC_31330 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMPC_31340 PF00989 PAS fold AMPC_31340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_31340 PF00512 His Kinase A (phospho-acceptor) domain AMPC_31380 PF00857 Isochorismatase family AMPC_31390 PF13193 AMP-binding enzyme C-terminal domain AMPC_31390 PF00501 AMP-binding enzyme AMPC_31420 PF00486 Transcriptional regulatory protein, C terminal AMPC_31420 PF00072 Response regulator receiver domain AMPC_31430 PF04055 Radical SAM superfamily AMPC_31430 PF13282 Domain of unknown function (DUF4070) AMPC_31430 PF02310 B12 binding domain AMPC_31440 PF00989 PAS fold AMPC_31440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_31440 PF00512 His Kinase A (phospho-acceptor) domain AMPC_31450 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AMPC_31460 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AMPC_31460 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AMPC_31470 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AMPC_31470 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMPC_31480 PF00248 Aldo/keto reductase family AMPC_31490 PF03466 LysR substrate binding domain AMPC_31490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMPC_31510 PF00291 Pyridoxal-phosphate dependent enzyme AMPC_31520 PF06224 Winged helix DNA-binding domain AMPC_31550 PF00158 Sigma-54 interaction domain AMPC_31550 PF00072 Response regulator receiver domain AMPC_31550 PF02954 Bacterial regulatory protein, Fis family AMPC_31560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_31590 PF02954 Bacterial regulatory protein, Fis family AMPC_31590 PF00158 Sigma-54 interaction domain AMPC_31590 PF00072 Response regulator receiver domain AMPC_31600 PF00512 His Kinase A (phospho-acceptor) domain AMPC_31600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_31610 PF00529 HlyD membrane-fusion protein of T1SS AMPC_31610 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMPC_31620 PF00873 AcrB/AcrD/AcrF family AMPC_31630 PF02321 Outer membrane efflux protein AMPC_31640 PF13673 Acetyltransferase (GNAT) domain AMPC_31640 PF00958 GMP synthase C terminal domain AMPC_31640 PF00117 Glutamine amidotransferase class-I AMPC_31640 PF03352 Methyladenine glycosylase AMPC_31640 PF13302 Acetyltransferase (GNAT) domain AMPC_31670 PF00994 Probable molybdopterin binding domain AMPC_31670 PF03454 MoeA C-terminal region (domain IV) AMPC_31670 PF03453 MoeA N-terminal region (domain I and II) AMPC_31680 PF00313 'Cold-shock' DNA-binding domain AMPC_31690 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AMPC_31690 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMPC_31700 PF00899 ThiF family AMPC_31700 PF00581 Rhodanese-like domain AMPC_31710 PF00899 ThiF family AMPC_31720 PF02954 Bacterial regulatory protein, Fis family AMPC_31720 PF00072 Response regulator receiver domain AMPC_31720 PF00158 Sigma-54 interaction domain AMPC_31730 PF00512 His Kinase A (phospho-acceptor) domain AMPC_31730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_31740 PF13649 Methyltransferase domain AMPC_31760 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AMPC_31760 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain AMPC_31810 PF06463 Molybdenum Cofactor Synthesis C AMPC_31810 PF04055 Radical SAM superfamily AMPC_31900 PF03466 LysR substrate binding domain AMPC_31900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMPC_31910 PF00248 Aldo/keto reductase family AMPC_31920 PF00106 short chain dehydrogenase AMPC_31930 PF00248 Aldo/keto reductase family AMPC_31940 PF00248 Aldo/keto reductase family AMPC_31950 PF12146 Serine aminopeptidase, S33 AMPC_31960 PF02627 Carboxymuconolactone decarboxylase family AMPC_31970 PF07690 Major Facilitator Superfamily AMPC_31980 PF07690 Major Facilitator Superfamily AMPC_31990 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AMPC_32010 PF08240 Alcohol dehydrogenase GroES-like domain AMPC_32010 PF00107 Zinc-binding dehydrogenase AMPC_32010 PF13823 Alcohol dehydrogenase GroES-associated AMPC_32020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMPC_32020 PF03466 LysR substrate binding domain AMPC_32030 PF18019 HD domain AMPC_32030 PF00270 DEAD/DEAH box helicase AMPC_32030 PF00271 Helicase conserved C-terminal domain AMPC_32060 PF09344 CT1975-like protein AMPC_32070 PF09704 CRISPR-associated protein (Cas_Cas5) AMPC_32090 PF01867 CRISPR associated protein Cas1 AMPC_32100 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) AMPC_32110 PF00174 Oxidoreductase molybdopterin binding domain AMPC_32130 PF01634 ATP phosphoribosyltransferase AMPC_32140 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMPC_32150 PF17827 PrmC N-terminal domain AMPC_32150 PF05175 Methyltransferase small domain AMPC_32160 PF00472 RF-1 domain AMPC_32160 PF03462 PCRF domain AMPC_32180 PF00463 Isocitrate lyase family AMPC_32200 PF00999 Sodium/hydrogen exchanger family AMPC_32210 PF00158 Sigma-54 interaction domain AMPC_32210 PF06506 Propionate catabolism activator AMPC_32210 PF02954 Bacterial regulatory protein, Fis family AMPC_32220 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMPC_32220 PF02770 Acyl-CoA dehydrogenase, middle domain AMPC_32220 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMPC_32230 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMPC_32230 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMPC_32230 PF00378 Enoyl-CoA hydratase/isomerase AMPC_32240 PF02803 Thiolase, C-terminal domain AMPC_32240 PF00108 Thiolase, N-terminal domain AMPC_32250 PF02770 Acyl-CoA dehydrogenase, middle domain AMPC_32250 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMPC_32250 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMPC_32290 PF01979 Amidohydrolase family AMPC_32300 PF04055 Radical SAM superfamily AMPC_32310 PF04055 Radical SAM superfamily AMPC_32320 PF02441 Flavoprotein AMPC_32330 PF01209 ubiE/COQ5 methyltransferase family AMPC_32340 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AMPC_32370 PF16591 Helical bimodular sensor domain AMPC_32370 PF00672 HAMP domain AMPC_32370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMPC_32380 PF00348 Polyprenyl synthetase AMPC_32400 PF00072 Response regulator receiver domain AMPC_32400 PF13426 PAS domain AMPC_32400 PF08448 PAS fold AMPC_32400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_32400 PF00512 His Kinase A (phospho-acceptor) domain AMPC_32410 PF01416 tRNA pseudouridine synthase AMPC_32420 PF08447 PAS fold AMPC_32420 PF00989 PAS fold AMPC_32420 PF00512 His Kinase A (phospho-acceptor) domain AMPC_32420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_32420 PF13426 PAS domain AMPC_32420 PF13493 Domain of unknown function (DUF4118) AMPC_32430 PF00512 His Kinase A (phospho-acceptor) domain AMPC_32430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_32440 PF00004 ATPase family associated with various cellular activities (AAA) AMPC_32440 PF07724 AAA domain (Cdc48 subfamily) AMPC_32440 PF17871 AAA lid domain AMPC_32440 PF02861 Clp amino terminal domain, pathogenicity island component AMPC_32440 PF10431 C-terminal, D2-small domain, of ClpB protein AMPC_32460 PF00195 Chalcone and stilbene synthases, N-terminal domain AMPC_32460 PF02797 Chalcone and stilbene synthases, C-terminal domain AMPC_32490 PF00501 AMP-binding enzyme AMPC_32500 PF01494 FAD binding domain AMPC_32510 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AMPC_32510 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AMPC_32520 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMPC_32520 PF00437 Type II/IV secretion system protein AMPC_32550 PF01432 Peptidase family M3 AMPC_32590 PF00753 Metallo-beta-lactamase superfamily AMPC_32590 PF12706 Beta-lactamase superfamily domain AMPC_32600 PF01053 Cys/Met metabolism PLP-dependent enzyme AMPC_32630 PF00005 ABC transporter AMPC_32650 PF00108 Thiolase, N-terminal domain AMPC_32650 PF02803 Thiolase, C-terminal domain AMPC_32660 PF00378 Enoyl-CoA hydratase/isomerase AMPC_32660 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMPC_32660 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMPC_32690 PF00672 HAMP domain AMPC_32690 PF18698 Histidine kinase sensor domain AMPC_32690 PF00512 His Kinase A (phospho-acceptor) domain AMPC_32690 PF00989 PAS fold AMPC_32690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_32700 PF00486 Transcriptional regulatory protein, C terminal AMPC_32700 PF00072 Response regulator receiver domain AMPC_32710 PF03841 L-seryl-tRNA selenium transferase AMPC_32710 PF12390 Selenocysteine synthase N terminal AMPC_32720 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AMPC_32720 PF00361 Proton-conducting membrane transporter AMPC_32730 PF00361 Proton-conducting membrane transporter AMPC_32730 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus AMPC_32740 PF00361 Proton-conducting membrane transporter AMPC_32750 PF00571 CBS domain AMPC_32750 PF00478 IMP dehydrogenase / GMP reductase domain AMPC_32770 PF00158 Sigma-54 interaction domain AMPC_32770 PF02954 Bacterial regulatory protein, Fis family AMPC_32770 PF00072 Response regulator receiver domain AMPC_32780 PF00512 His Kinase A (phospho-acceptor) domain AMPC_32780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_32790 PF09107 Elongation factor SelB, winged helix AMPC_32790 PF03144 Elongation factor Tu domain 2 AMPC_32790 PF00009 Elongation factor Tu GTP binding domain AMPC_32790 PF09106 Elongation factor SelB, winged helix AMPC_32800 PF00156 Phosphoribosyl transferase domain AMPC_32810 PF01430 Hsp33 protein AMPC_32830 PF16363 GDP-mannose 4,6 dehydratase AMPC_32850 PF00672 HAMP domain AMPC_32850 PF00512 His Kinase A (phospho-acceptor) domain AMPC_32850 PF18698 Histidine kinase sensor domain AMPC_32850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_32850 PF00989 PAS fold AMPC_32870 PF00535 Glycosyl transferase family 2 AMPC_32880 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMPC_32930 PF00990 Diguanylate cyclase, GGDEF domain AMPC_32950 PF13520 Amino acid permease AMPC_32960 PF05736 OprF membrane domain AMPC_32960 PF00691 OmpA family AMPC_33000 PF12706 Beta-lactamase superfamily domain AMPC_33030 PF01425 Amidase AMPC_33040 PF00248 Aldo/keto reductase family AMPC_33100 PF13180 PDZ domain AMPC_33100 PF17820 PDZ domain AMPC_33110 PF00248 Aldo/keto reductase family AMPC_33120 PF07690 Major Facilitator Superfamily AMPC_33130 PF01039 Carboxyl transferase domain AMPC_33140 PF00289 Biotin carboxylase, N-terminal domain AMPC_33140 PF02785 Biotin carboxylase C-terminal domain AMPC_33140 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMPC_33160 PF02653 Branched-chain amino acid transport system / permease component AMPC_33170 PF11862 Domain of unknown function (DUF3382) AMPC_33170 PF02653 Branched-chain amino acid transport system / permease component AMPC_33180 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMPC_33180 PF00005 ABC transporter AMPC_33190 PF00005 ABC transporter AMPC_33200 PF00174 Oxidoreductase molybdopterin binding domain AMPC_33230 PF00005 ABC transporter AMPC_33240 PF01177 Asp/Glu/Hydantoin racemase AMPC_33250 PF00005 ABC transporter AMPC_33250 PF12848 ABC transporter AMPC_33260 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMPC_33260 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMPC_33280 PF03747 ADP-ribosylglycohydrolase AMPC_33300 PF02203 Tar ligand binding domain homologue AMPC_33300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMPC_33300 PF00672 HAMP domain AMPC_33320 PF00128 Alpha amylase, catalytic domain AMPC_33320 PF16657 Maltogenic Amylase, C-terminal domain AMPC_33330 PF02446 4-alpha-glucanotransferase AMPC_33340 PF05552 Conserved TM helix AMPC_33380 PF00873 AcrB/AcrD/AcrF family AMPC_33390 PF02403 Seryl-tRNA synthetase N-terminal domain AMPC_33390 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMPC_33440 PF12697 Alpha/beta hydrolase family AMPC_33450 PF01523 Putative modulator of DNA gyrase AMPC_33460 PF01523 Putative modulator of DNA gyrase AMPC_33480 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMPC_33510 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMPC_33510 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMPC_33510 PF00034 Cytochrome c AMPC_33530 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase AMPC_33550 PF01595 Cyclin M transmembrane N-terminal domain AMPC_33550 PF03471 Transporter associated domain AMPC_33550 PF00571 CBS domain AMPC_33560 PF13302 Acetyltransferase (GNAT) domain AMPC_33620 PF13614 AAA domain AMPC_33640 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMPC_33640 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMPC_33650 PF00155 Aminotransferase class I and II AMPC_33660 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AMPC_33660 PF14602 Hexapeptide repeat of succinyl-transferase AMPC_33660 PF00132 Bacterial transferase hexapeptide (six repeats) AMPC_33700 PF04264 YceI-like domain AMPC_33710 PF04002 RadC-like JAB domain AMPC_33730 PF00582 Universal stress protein family AMPC_33740 PF00436 Single-strand binding protein family AMPC_33750 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AMPC_33820 PF06508 Queuosine biosynthesis protein QueC AMPC_33830 PF17820 PDZ domain AMPC_33830 PF01471 Putative peptidoglycan binding domain AMPC_33830 PF03572 Peptidase family S41 AMPC_33840 PF04107 Glutamate-cysteine ligase family 2(GCS2) AMPC_33900 PF01882 Protein of unknown function DUF58 AMPC_33910 PF17863 AAA lid domain AMPC_33910 PF07726 ATPase family associated with various cellular activities (AAA) AMPC_33940 PF01207 Dihydrouridine synthase (Dus) AMPC_33960 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMPC_33960 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP AMPC_33980 PF01145 SPFH domain / Band 7 family AMPC_34000 PF00005 ABC transporter AMPC_34000 PF02687 FtsX-like permease family AMPC_34000 PF12704 MacB-like periplasmic core domain AMPC_34020 PF02390 Putative methyltransferase AMPC_34030 PF02272 DHHA1 domain AMPC_34030 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMPC_34030 PF01411 tRNA synthetases class II (A) AMPC_34050 PF00512 His Kinase A (phospho-acceptor) domain AMPC_34050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_34060 PF08494 DEAD/H associated AMPC_34060 PF00270 DEAD/DEAH box helicase AMPC_34060 PF00271 Helicase conserved C-terminal domain AMPC_34070 PF00091 Tubulin/FtsZ family, GTPase domain AMPC_34070 PF12327 FtsZ family, C-terminal domain AMPC_34080 PF02491 SHS2 domain inserted in FTSA AMPC_34090 PF03799 Cell division protein FtsQ AMPC_34090 PF08478 POTRA domain, FtsQ-type AMPC_34150 PF07478 D-ala D-ala ligase C-terminus AMPC_34150 PF01820 D-ala D-ala ligase N-terminus AMPC_34160 PF01565 FAD binding domain AMPC_34160 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AMPC_34170 PF01225 Mur ligase family, catalytic domain AMPC_34170 PF02875 Mur ligase family, glutamate ligase domain AMPC_34170 PF08245 Mur ligase middle domain AMPC_34180 PF04101 Glycosyltransferase family 28 C-terminal domain AMPC_34180 PF03033 Glycosyltransferase family 28 N-terminal domain AMPC_34190 PF01098 Cell cycle protein AMPC_34200 PF02875 Mur ligase family, glutamate ligase domain AMPC_34200 PF08245 Mur ligase middle domain AMPC_34210 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AMPC_34210 PF00953 Glycosyl transferase family 4 AMPC_34220 PF01225 Mur ligase family, catalytic domain AMPC_34220 PF02875 Mur ligase family, glutamate ligase domain AMPC_34220 PF08245 Mur ligase middle domain AMPC_34230 PF01225 Mur ligase family, catalytic domain AMPC_34230 PF02875 Mur ligase family, glutamate ligase domain AMPC_34230 PF08245 Mur ligase middle domain AMPC_34240 PF00905 Penicillin binding protein transpeptidase domain AMPC_34240 PF03717 Penicillin-binding Protein dimerisation domain AMPC_34260 PF01795 MraW methylase family AMPC_34280 PF02381 MraZ protein, putative antitoxin-like AMPC_34290 PF00106 short chain dehydrogenase AMPC_34300 PF00672 HAMP domain AMPC_34300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMPC_34300 PF17200 Single Cache domain 2 AMPC_34310 PF00005 ABC transporter AMPC_34320 PF00528 Binding-protein-dependent transport system inner membrane component AMPC_34340 PF00291 Pyridoxal-phosphate dependent enzyme AMPC_34360 PF00732 GMC oxidoreductase AMPC_34360 PF05199 GMC oxidoreductase AMPC_34380 PF00158 Sigma-54 interaction domain AMPC_34380 PF00072 Response regulator receiver domain AMPC_34380 PF02954 Bacterial regulatory protein, Fis family AMPC_34390 PF00364 Biotin-requiring enzyme AMPC_34400 PF00378 Enoyl-CoA hydratase/isomerase AMPC_34410 PF00069 Protein kinase domain AMPC_34430 PF01184 GPR1/FUN34/yaaH family AMPC_34450 PF08241 Methyltransferase domain AMPC_34460 PF00561 alpha/beta hydrolase fold AMPC_34470 PF02322 Cytochrome bd terminal oxidase subunit II AMPC_34480 PF01654 Cytochrome bd terminal oxidase subunit I AMPC_34490 PF02954 Bacterial regulatory protein, Fis family AMPC_34490 PF00158 Sigma-54 interaction domain AMPC_34490 PF00072 Response regulator receiver domain AMPC_34500 PF00512 His Kinase A (phospho-acceptor) domain AMPC_34500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_34520 PF00152 tRNA synthetases class II (D, K and N) AMPC_34540 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMPC_34550 PF00873 AcrB/AcrD/AcrF family AMPC_34570 PF17785 PUA-like domain AMPC_34570 PF10672 S-adenosylmethionine-dependent methyltransferase AMPC_34580 PF00753 Metallo-beta-lactamase superfamily AMPC_34590 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMPC_34600 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMPC_34620 PF01053 Cys/Met metabolism PLP-dependent enzyme AMPC_34630 PF00291 Pyridoxal-phosphate dependent enzyme AMPC_34630 PF00571 CBS domain AMPC_34670 PF00474 Sodium:solute symporter family AMPC_34700 PF03793 PASTA domain AMPC_34700 PF00069 Protein kinase domain AMPC_34710 PF07690 Major Facilitator Superfamily AMPC_34710 PF00083 Sugar (and other) transporter AMPC_34720 PF12832 MFS_1 like family AMPC_34730 PF00483 Nucleotidyl transferase AMPC_34740 PF03551 Transcriptional regulator PadR-like family AMPC_34750 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family AMPC_34770 PF00155 Aminotransferase class I and II AMPC_34790 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMPC_34790 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMPC_34800 PF00202 Aminotransferase class-III AMPC_34820 PF01066 CDP-alcohol phosphatidyltransferase AMPC_34820 PF12804 MobA-like NTP transferase domain AMPC_34910 PF01556 DnaJ C terminal domain AMPC_34910 PF00226 DnaJ domain AMPC_34910 PF00684 DnaJ central domain AMPC_34920 PF00072 Response regulator receiver domain AMPC_34920 PF00486 Transcriptional regulatory protein, C terminal AMPC_34930 PF00814 Glycoprotease family AMPC_34940 PF00398 Ribosomal RNA adenine dimethylase AMPC_34960 PF02548 Ketopantoate hydroxymethyltransferase AMPC_34970 PF02569 Pantoate-beta-alanine ligase AMPC_34980 PF01668 SmpB protein AMPC_35040 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain AMPC_35040 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain AMPC_35050 PF11941 Domain of unknown function (DUF3459) AMPC_35050 PF00128 Alpha amylase, catalytic domain AMPC_35060 PF02646 RmuC family AMPC_35070 PF00575 S1 RNA binding domain AMPC_35090 PF04225 Opacity-associated protein A LysM-like domain AMPC_35090 PF01551 Peptidase family M23 AMPC_35100 PF00285 Citrate synthase, C-terminal domain AMPC_35120 PF00999 Sodium/hydrogen exchanger family AMPC_35130 PF00694 Aconitase C-terminal domain AMPC_35130 PF00330 Aconitase family (aconitate hydratase) AMPC_35140 PF08240 Alcohol dehydrogenase GroES-like domain AMPC_35140 PF00107 Zinc-binding dehydrogenase AMPC_35180 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AMPC_35180 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain AMPC_35180 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AMPC_35220 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AMPC_35230 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AMPC_35230 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AMPC_35230 PF00374 Nickel-dependent hydrogenase AMPC_35240 PF00361 Proton-conducting membrane transporter AMPC_35240 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AMPC_35270 PF00361 Proton-conducting membrane transporter AMPC_35290 PF01142 tRNA pseudouridine synthase D (TruD) AMPC_35310 PF13462 Thioredoxin AMPC_35310 PF06965 Na+/H+ antiporter 1 AMPC_35320 PF04055 Radical SAM superfamily AMPC_35320 PF00919 Uncharacterized protein family UPF0004 AMPC_35320 PF18693 TRAM domain AMPC_35340 PF14437 MafB19-like deaminase AMPC_35350 PF12169 DNA polymerase III subunits gamma and tau domain III AMPC_35360 PF02575 YbaB/EbfC DNA-binding family AMPC_35370 PF13662 Toprim domain AMPC_35370 PF00633 Helix-hairpin-helix motif AMPC_35370 PF02132 RecR protein AMPC_35390 PF00025 ADP-ribosylation factor family AMPC_35490 PF01078 Magnesium chelatase, subunit ChlI AMPC_35490 PF13335 Magnesium chelatase, subunit ChlI C-terminal AMPC_35500 PF00154 recA bacterial DNA recombination protein AMPC_35560 PF00994 Probable molybdopterin binding domain AMPC_35560 PF02464 Competence-damaged protein AMPC_35570 PF04608 Phosphatidylglycerophosphatase A AMPC_35580 PF01066 CDP-alcohol phosphatidyltransferase AMPC_35590 PF00633 Helix-hairpin-helix motif AMPC_35590 PF00730 HhH-GPD superfamily base excision DNA repair protein AMPC_35600 PF01327 Polypeptide deformylase AMPC_35610 PF00271 Helicase conserved C-terminal domain AMPC_35610 PF17764 3′ DNA-binding domain (3′BD) AMPC_35610 PF18074 Primosomal protein N C-terminal domain AMPC_35610 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AMPC_35610 PF04851 Type III restriction enzyme, res subunit AMPC_35620 PF00483 Nucleotidyl transferase AMPC_35640 PF00005 ABC transporter AMPC_35660 PF01032 FecCD transport family AMPC_35670 PF01497 Periplasmic binding protein AMPC_35690 PF07715 TonB-dependent Receptor Plug Domain AMPC_35690 PF00593 TonB dependent receptor AMPC_35730 PF13180 PDZ domain AMPC_35740 PF13180 PDZ domain AMPC_35750 PF00196 Bacterial regulatory proteins, luxR family AMPC_35750 PF00072 Response regulator receiver domain AMPC_35770 PF00005 ABC transporter AMPC_35780 PF00528 Binding-protein-dependent transport system inner membrane component AMPC_35790 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMPC_35810 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMPC_35810 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMPC_35820 PF18073 Rubredoxin metal binding domain AMPC_35830 PF06968 Biotin and Thiamin Synthesis associated domain AMPC_35830 PF04055 Radical SAM superfamily AMPC_35840 PF00155 Aminotransferase class I and II AMPC_35870 PF00291 Pyridoxal-phosphate dependent enzyme AMPC_35870 PF13291 ACT domain AMPC_35880 PF00196 Bacterial regulatory proteins, luxR family AMPC_35880 PF00072 Response regulator receiver domain AMPC_35890 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AMPC_35890 PF02811 PHP domain AMPC_35890 PF07733 Bacterial DNA polymerase III alpha NTPase domain AMPC_35890 PF01336 OB-fold nucleic acid binding domain AMPC_35890 PF14579 Helix-hairpin-helix motif AMPC_35930 PF12833 Helix-turn-helix domain AMPC_35930 PF02805 Metal binding domain of Ada AMPC_35930 PF00730 HhH-GPD superfamily base excision DNA repair protein AMPC_35930 PF06029 AlkA N-terminal domain AMPC_35970 PF05368 NmrA-like family AMPC_36050 PF02417 Chromate transporter AMPC_36100 PF01790 Prolipoprotein diacylglyceryl transferase AMPC_36110 PF00072 Response regulator receiver domain AMPC_36110 PF00486 Transcriptional regulatory protein, C terminal AMPC_36120 PF01370 NAD dependent epimerase/dehydratase family AMPC_36150 PF16078 2-oxoglutarate dehydrogenase N-terminus AMPC_36150 PF00676 Dehydrogenase E1 component AMPC_36150 PF16870 2-oxoglutarate dehydrogenase C-terminal AMPC_36150 PF02779 Transketolase, pyrimidine binding domain AMPC_36160 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMPC_36160 PF02817 e3 binding domain AMPC_36160 PF00364 Biotin-requiring enzyme AMPC_36170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_36170 PF08448 PAS fold AMPC_36170 PF13426 PAS domain AMPC_36170 PF00072 Response regulator receiver domain AMPC_36170 PF00512 His Kinase A (phospho-acceptor) domain AMPC_36190 PF00270 DEAD/DEAH box helicase AMPC_36190 PF04408 Helicase associated domain (HA2) AMPC_36190 PF00271 Helicase conserved C-terminal domain AMPC_36190 PF08482 ATP-dependent helicase C-terminal AMPC_36230 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AMPC_36230 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMPC_36230 PF06827 Zinc finger found in FPG and IleRS AMPC_36250 PF17871 AAA lid domain AMPC_36250 PF10431 C-terminal, D2-small domain, of ClpB protein AMPC_36250 PF02861 Clp amino terminal domain, pathogenicity island component AMPC_36250 PF07724 AAA domain (Cdc48 subfamily) AMPC_36250 PF00004 ATPase family associated with various cellular activities (AAA) AMPC_36260 PF02617 ATP-dependent Clp protease adaptor protein ClpS AMPC_36270 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AMPC_36280 PF04542 Sigma-70 region 2 AMPC_36280 PF08281 Sigma-70, region 4 AMPC_36300 PF13247 4Fe-4S dicluster domain AMPC_36300 PF00037 4Fe-4S binding domain AMPC_36370 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AMPC_36370 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AMPC_36380 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMPC_36390 PF00510 Cytochrome c oxidase subunit III AMPC_36420 PF00205 Thiamine pyrophosphate enzyme, central domain AMPC_36420 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMPC_36420 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMPC_36430 PF13378 Enolase C-terminal domain-like AMPC_36430 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMPC_36440 PF02913 FAD linked oxidases, C-terminal domain AMPC_36440 PF01565 FAD binding domain AMPC_36440 PF13183 4Fe-4S dicluster domain AMPC_36470 PF04679 ATP dependent DNA ligase C terminal region AMPC_36470 PF01068 ATP dependent DNA ligase domain AMPC_36480 PF01645 Conserved region in glutamate synthase AMPC_36480 PF04898 Glutamate synthase central domain AMPC_36480 PF01493 GXGXG motif AMPC_36480 PF00310 Glutamine amidotransferases class-II AMPC_36490 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AMPC_36490 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMPC_36520 PF16767 Sensor domain of alginate biosynthesis sensor protein KinB AMPC_36520 PF08448 PAS fold AMPC_36520 PF00512 His Kinase A (phospho-acceptor) domain AMPC_36520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_36520 PF00672 HAMP domain AMPC_36530 PF07690 Major Facilitator Superfamily AMPC_36540 PF06463 Molybdenum Cofactor Synthesis C AMPC_36540 PF04055 Radical SAM superfamily AMPC_36560 PF13247 4Fe-4S dicluster domain AMPC_36560 PF12800 4Fe-4S binding domain AMPC_36580 PF02634 FdhD/NarQ family AMPC_36590 PF01226 Formate/nitrite transporter AMPC_36600 PF00005 ABC transporter AMPC_36600 PF12848 ABC transporter AMPC_36620 PF02954 Bacterial regulatory protein, Fis family AMPC_36620 PF00072 Response regulator receiver domain AMPC_36620 PF00158 Sigma-54 interaction domain AMPC_36630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_36660 PF00005 ABC transporter AMPC_36670 PF00005 ABC transporter AMPC_36700 PF04405 Domain of Unknown function (DUF542) AMPC_36700 PF01814 Hemerythrin HHE cation binding domain AMPC_36710 PF12697 Alpha/beta hydrolase family AMPC_36740 PF03466 LysR substrate binding domain AMPC_36740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMPC_36750 PF00155 Aminotransferase class I and II AMPC_36760 PF08240 Alcohol dehydrogenase GroES-like domain AMPC_36760 PF00107 Zinc-binding dehydrogenase AMPC_36770 PF03462 PCRF domain AMPC_36770 PF00472 RF-1 domain AMPC_36790 PF13419 Haloacid dehalogenase-like hydrolase AMPC_36800 PF01594 AI-2E family transporter AMPC_36850 PF00892 EamA-like transporter family AMPC_36870 PF02310 B12 binding domain AMPC_36870 PF04055 Radical SAM superfamily AMPC_36880 PF00437 Type II/IV secretion system protein AMPC_36920 PF14834 Glutathione S-transferase, C-terminal domain AMPC_36920 PF02798 Glutathione S-transferase, N-terminal domain AMPC_36930 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMPC_36930 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AMPC_36940 PF13193 AMP-binding enzyme C-terminal domain AMPC_36940 PF16177 Acetyl-coenzyme A synthetase N-terminus AMPC_36940 PF00501 AMP-binding enzyme AMPC_36950 PF17676 LD-carboxypeptidase C-terminal domain AMPC_36950 PF02016 LD-carboxypeptidase N-terminal domain AMPC_36960 PF11954 Domain of unknown function (DUF3471) AMPC_36960 PF00144 Beta-lactamase AMPC_36970 PF02875 Mur ligase family, glutamate ligase domain AMPC_36970 PF01225 Mur ligase family, catalytic domain AMPC_36970 PF08245 Mur ligase middle domain AMPC_37010 PF00578 AhpC/TSA family AMPC_37030 PF00459 Inositol monophosphatase family AMPC_37070 PF00580 UvrD/REP helicase N-terminal domain AMPC_37070 PF13361 UvrD-like helicase C-terminal domain AMPC_37080 PF00572 Ribosomal protein L13 AMPC_37090 PF00380 Ribosomal protein S9/S16 AMPC_37100 PF00437 Type II/IV secretion system protein AMPC_37110 PF02631 RecX family AMPC_37120 PF00528 Binding-protein-dependent transport system inner membrane component AMPC_37130 PF00005 ABC transporter AMPC_37130 PF00571 CBS domain AMPC_37150 PF07690 Major Facilitator Superfamily AMPC_37180 PF00586 AIR synthase related protein, N-terminal domain AMPC_37180 PF02769 AIR synthase related protein, C-terminal domain AMPC_37190 PF01520 N-acetylmuramoyl-L-alanine amidase AMPC_37200 PF01138 3' exoribonuclease family, domain 1 AMPC_37200 PF03725 3' exoribonuclease family, domain 2 AMPC_37210 PF01725 Ham1 family AMPC_37230 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMPC_37230 PF05698 Bacterial trigger factor protein (TF) C-terminus AMPC_37230 PF05697 Bacterial trigger factor protein (TF) AMPC_37240 PF00574 Clp protease AMPC_37250 PF10431 C-terminal, D2-small domain, of ClpB protein AMPC_37250 PF06689 ClpX C4-type zinc finger AMPC_37250 PF07724 AAA domain (Cdc48 subfamily) AMPC_37260 PF16347 Domain of unknown function (DUF4976) AMPC_37260 PF00884 Sulfatase AMPC_37270 PF00004 ATPase family associated with various cellular activities (AAA) AMPC_37270 PF05362 Lon protease (S16) C-terminal proteolytic domain AMPC_37270 PF02190 ATP-dependent protease La (LON) substrate-binding domain AMPC_37280 PF04445 Putative SAM-dependent methyltransferase AMPC_37300 PF02445 Quinolinate synthetase A protein AMPC_37310 PF02608 ABC transporter substrate-binding protein PnrA-like AMPC_37330 PF02653 Branched-chain amino acid transport system / permease component AMPC_37340 PF00005 ABC transporter AMPC_37350 PF00156 Phosphoribosyl transferase domain AMPC_37360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_37360 PF00512 His Kinase A (phospho-acceptor) domain AMPC_37360 PF08448 PAS fold AMPC_37360 PF13188 PAS domain AMPC_37360 PF00072 Response regulator receiver domain AMPC_37370 PF10459 Peptidase S46 AMPC_37380 PF00378 Enoyl-CoA hydratase/isomerase AMPC_37410 PF00155 Aminotransferase class I and II AMPC_37430 PF00005 ABC transporter AMPC_37440 PF01061 ABC-2 type transporter AMPC_37490 PF00270 DEAD/DEAH box helicase AMPC_37490 PF00570 HRDC domain AMPC_37490 PF16124 RecQ zinc-binding AMPC_37490 PF09382 RQC domain AMPC_37490 PF00271 Helicase conserved C-terminal domain AMPC_37500 PF07152 YaeQ protein AMPC_37530 PF01458 Uncharacterized protein family (UPF0051) AMPC_37540 PF00005 ABC transporter AMPC_37550 PF01458 Uncharacterized protein family (UPF0051) AMPC_37560 PF00266 Aminotransferase class-V AMPC_37570 PF01592 NifU-like N terminal domain AMPC_37610 PF13533 Biotin-lipoyl like AMPC_37630 PF04632 Fusaric acid resistance protein family AMPC_37650 PF02321 Outer membrane efflux protein AMPC_37680 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding AMPC_37690 PF07687 Peptidase dimerisation domain AMPC_37690 PF01546 Peptidase family M20/M25/M40 AMPC_37700 PF00343 Carbohydrate phosphorylase AMPC_37710 PF00512 His Kinase A (phospho-acceptor) domain AMPC_37710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_37710 PF07689 KaiB domain AMPC_37720 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMPC_37730 PF04011 LemA family AMPC_37780 PF01381 Helix-turn-helix AMPC_37790 PF13520 Amino acid permease AMPC_37800 PF00909 Ammonium Transporter Family AMPC_37810 PF03793 PASTA domain AMPC_37810 PF00069 Protein kinase domain AMPC_37840 PF02798 Glutathione S-transferase, N-terminal domain AMPC_37840 PF00043 Glutathione S-transferase, C-terminal domain AMPC_37860 PF00012 Hsp70 protein AMPC_37870 PF00012 Hsp70 protein AMPC_37880 PF00005 ABC transporter AMPC_37880 PF16326 ABC transporter C-terminal domain AMPC_37880 PF12848 ABC transporter AMPC_37890 PF02705 K+ potassium transporter AMPC_37900 PF00543 Nitrogen regulatory protein P-II AMPC_37910 PF00909 Ammonium Transporter Family AMPC_37920 PF02954 Bacterial regulatory protein, Fis family AMPC_37920 PF00072 Response regulator receiver domain AMPC_37920 PF00158 Sigma-54 interaction domain AMPC_37930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_37930 PF00512 His Kinase A (phospho-acceptor) domain AMPC_37940 PF00291 Pyridoxal-phosphate dependent enzyme AMPC_37950 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMPC_37950 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMPC_37950 PF02770 Acyl-CoA dehydrogenase, middle domain AMPC_37960 PF00171 Aldehyde dehydrogenase family AMPC_37980 PF00128 Alpha amylase, catalytic domain AMPC_37980 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMPC_38000 PF02913 FAD linked oxidases, C-terminal domain AMPC_38000 PF01565 FAD binding domain AMPC_38010 PF02803 Thiolase, C-terminal domain AMPC_38010 PF00108 Thiolase, N-terminal domain AMPC_38040 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AMPC_38040 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AMPC_38040 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AMPC_38080 PF01694 Rhomboid family AMPC_38130 PF01702 Queuine tRNA-ribosyltransferase AMPC_38170 PF03793 PASTA domain AMPC_38170 PF00069 Protein kinase domain AMPC_38180 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMPC_38180 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AMPC_38180 PF13247 4Fe-4S dicluster domain AMPC_38190 PF00248 Aldo/keto reductase family AMPC_38300 PF00793 DAHP synthetase I family AMPC_38320 PF01292 Prokaryotic cytochrome b561 AMPC_38330 PF13247 4Fe-4S dicluster domain AMPC_38330 PF09163 Formate dehydrogenase N, transmembrane AMPC_38360 PF00005 ABC transporter AMPC_38370 PF03649 Uncharacterised protein family (UPF0014) AMPC_38400 PF13183 4Fe-4S dicluster domain AMPC_38400 PF02754 Cysteine-rich domain AMPC_38430 PF00465 Iron-containing alcohol dehydrogenase AMPC_38440 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMPC_38440 PF00512 His Kinase A (phospho-acceptor) domain AMPC_38440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_38450 PF02954 Bacterial regulatory protein, Fis family AMPC_38450 PF00072 Response regulator receiver domain AMPC_38450 PF00158 Sigma-54 interaction domain AMPC_38460 PF03605 Anaerobic c4-dicarboxylate membrane transporter AMPC_38480 PF03170 Bacterial cellulose synthase subunit AMPC_38480 PF00535 Glycosyl transferase family 2 AMPC_38480 PF07238 PilZ domain AMPC_38520 PF14310 Fibronectin type III-like domain AMPC_38520 PF00933 Glycosyl hydrolase family 3 N terminal domain AMPC_38520 PF07691 PA14 domain AMPC_38520 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMPC_38530 PF08240 Alcohol dehydrogenase GroES-like domain AMPC_38530 PF00107 Zinc-binding dehydrogenase AMPC_38580 PF08031 Berberine and berberine like AMPC_38580 PF01565 FAD binding domain AMPC_38590 PF00158 Sigma-54 interaction domain AMPC_38590 PF01590 GAF domain AMPC_38620 PF00107 Zinc-binding dehydrogenase AMPC_38620 PF08240 Alcohol dehydrogenase GroES-like domain AMPC_38640 PF00300 Histidine phosphatase superfamily (branch 1) AMPC_38670 PF00850 Histone deacetylase domain AMPC_38700 PF02625 XdhC and CoxI family AMPC_38700 PF13478 XdhC Rossmann domain AMPC_38710 PF00106 short chain dehydrogenase AMPC_38720 PF08359 YsiA-like protein, C-terminal region AMPC_38720 PF00440 Bacterial regulatory proteins, tetR family AMPC_38730 PF03193 RsgA GTPase AMPC_38740 PF03193 RsgA GTPase AMPC_38750 PF00672 HAMP domain AMPC_38750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_38750 PF00512 His Kinase A (phospho-acceptor) domain AMPC_38760 PF00072 Response regulator receiver domain AMPC_38760 PF00486 Transcriptional regulatory protein, C terminal AMPC_38820 PF01370 NAD dependent epimerase/dehydratase family AMPC_38850 PF09084 NMT1/THI5 like AMPC_38860 PF00528 Binding-protein-dependent transport system inner membrane component AMPC_38870 PF00005 ABC transporter AMPC_38900 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AMPC_38930 PF04264 YceI-like domain AMPC_38940 PF02954 Bacterial regulatory protein, Fis family AMPC_38940 PF00158 Sigma-54 interaction domain AMPC_38940 PF02830 V4R domain AMPC_38940 PF06505 Activator of aromatic catabolism AMPC_38950 PF00155 Aminotransferase class I and II AMPC_38950 PF00392 Bacterial regulatory proteins, gntR family AMPC_38970 PF02627 Carboxymuconolactone decarboxylase family AMPC_38980 PF06736 Protein of unknown function (DUF1211) AMPC_39000 PF04539 Sigma-70 region 3 AMPC_39000 PF04542 Sigma-70 region 2 AMPC_39000 PF04545 Sigma-70, region 4 AMPC_39040 PF01625 Peptide methionine sulfoxide reductase AMPC_39050 PF01641 SelR domain AMPC_39160 PF01066 CDP-alcohol phosphatidyltransferase AMPC_39170 PF01555 DNA methylase AMPC_39190 PF08331 Domain of unknown function (DUF1730) AMPC_39200 PF01571 Aminomethyltransferase folate-binding domain AMPC_39200 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMPC_39210 PF08240 Alcohol dehydrogenase GroES-like domain AMPC_39210 PF00107 Zinc-binding dehydrogenase AMPC_39210 PF13823 Alcohol dehydrogenase GroES-associated AMPC_39230 PF00578 AhpC/TSA family AMPC_39250 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMPC_39250 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMPC_39280 PF01435 Peptidase family M48 AMPC_39330 PF03150 Di-haem cytochrome c peroxidase AMPC_39440 PF17200 Single Cache domain 2 AMPC_39440 PF07730 Histidine kinase AMPC_39450 PF00072 Response regulator receiver domain AMPC_39450 PF00196 Bacterial regulatory proteins, luxR family AMPC_39460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_39460 PF00512 His Kinase A (phospho-acceptor) domain AMPC_39500 PF03747 ADP-ribosylglycohydrolase AMPC_39510 PF07357 Dinitrogenase reductase ADP-ribosyltransferase (DRAT) AMPC_39520 PF01590 GAF domain AMPC_39520 PF02954 Bacterial regulatory protein, Fis family AMPC_39520 PF00158 Sigma-54 interaction domain AMPC_39530 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AMPC_39540 PF00148 Nitrogenase component 1 type Oxidoreductase AMPC_39550 PF00148 Nitrogenase component 1 type Oxidoreductase AMPC_39550 PF11844 Domain of unknown function (DUF3364) AMPC_39560 PF00148 Nitrogenase component 1 type Oxidoreductase AMPC_39570 PF02579 Dinitrogenase iron-molybdenum cofactor AMPC_39580 PF12838 4Fe-4S dicluster domain AMPC_39590 PF02579 Dinitrogenase iron-molybdenum cofactor AMPC_39600 PF02579 Dinitrogenase iron-molybdenum cofactor AMPC_39600 PF04055 Radical SAM superfamily AMPC_39620 PF00899 ThiF family AMPC_39640 PF00535 Glycosyl transferase family 2 AMPC_39650 PF13537 Glutamine amidotransferase domain AMPC_39650 PF00733 Asparagine synthase AMPC_39680 PF16363 GDP-mannose 4,6 dehydratase AMPC_39720 PF00107 Zinc-binding dehydrogenase AMPC_39720 PF08240 Alcohol dehydrogenase GroES-like domain AMPC_39770 PF01212 Beta-eliminating lyase AMPC_39800 PF00106 short chain dehydrogenase AMPC_39810 PF00512 His Kinase A (phospho-acceptor) domain AMPC_39810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMPC_39810 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMPC_39850 PF00486 Transcriptional regulatory protein, C terminal AMPC_39850 PF00072 Response regulator receiver domain AMPC_39860 PF00571 CBS domain AMPC_39860 PF00478 IMP dehydrogenase / GMP reductase domain AMPC_39870 PF01578 Cytochrome C assembly protein AMPC_39900 PF02540 NAD synthase AMPC_39900 PF00117 Glutamine amidotransferase class-I AMPC_39900 PF00958 GMP synthase C terminal domain AMPC_39910 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMPC_39930 PF00012 Hsp70 protein