locus-tag class description LCQ53_00020 PF01966 HD domain LCQ53_00025 PF01467 Cytidylyltransferase-like LCQ53_00030 PF01985 CRS1 / YhbY (CRM) domain LCQ53_00035 PF09269 Domain of unknown function (DUF1967) LCQ53_00035 PF01018 GTP1/OBG LCQ53_00035 PF01926 50S ribosome-binding GTPase LCQ53_00040 PF01016 Ribosomal L27 protein LCQ53_00050 PF00829 Ribosomal prokaryotic L21 protein LCQ53_00055 PF10150 Ribonuclease E/G family LCQ53_00055 PF00575 S1 RNA binding domain LCQ53_00060 PF12241 Trans-2-enoyl-CoA reductase catalytic region LCQ53_00060 PF07055 Enoyl reductase FAD binding domain LCQ53_00060 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase LCQ53_00065 PF00672 HAMP domain LCQ53_00065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_00065 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_00065 PF01627 Hpt domain LCQ53_00065 PF00072 Response regulator receiver domain LCQ53_00065 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LCQ53_00085 PF01627 Hpt domain LCQ53_00085 PF00072 Response regulator receiver domain LCQ53_00085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_00085 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_00105 PF17863 AAA lid domain LCQ53_00105 PF07726 ATPase family associated with various cellular activities (AAA) LCQ53_00110 PF03553 Na+/H+ antiporter family LCQ53_00115 PF00694 Aconitase C-terminal domain LCQ53_00115 PF00330 Aconitase family (aconitate hydratase) LCQ53_00125 PF02581 Thiamine monophosphate synthase LCQ53_00125 PF08543 Phosphomethylpyrimidine kinase LCQ53_00130 PF02581 Thiamine monophosphate synthase LCQ53_00135 PF02110 Hydroxyethylthiazole kinase family LCQ53_00140 PF00082 Subtilase family LCQ53_00170 PF00005 ABC transporter LCQ53_00175 PF13426 PAS domain LCQ53_00175 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_00175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_00175 PF00672 HAMP domain LCQ53_00215 PF03466 LysR substrate binding domain LCQ53_00215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LCQ53_00220 PF00465 Iron-containing alcohol dehydrogenase LCQ53_00225 PF00248 Aldo/keto reductase family LCQ53_00240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LCQ53_00240 PF03466 LysR substrate binding domain LCQ53_00255 PF06445 GyrI-like small molecule binding domain LCQ53_00255 PF12833 Helix-turn-helix domain LCQ53_00265 PF00005 ABC transporter LCQ53_00265 PF17755 UvrA DNA-binding domain LCQ53_00265 PF17760 UvrA interaction domain LCQ53_00325 PF09334 tRNA synthetases class I (M) LCQ53_00325 PF13603 Leucyl-tRNA synthetase, Domain 2 LCQ53_00325 PF00133 tRNA synthetases class I (I, L, M and V) LCQ53_00325 PF08264 Anticodon-binding domain of tRNA LCQ53_00330 PF03734 L,D-transpeptidase catalytic domain LCQ53_00335 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LCQ53_00340 PF02127 Aminopeptidase I zinc metalloprotease (M18) LCQ53_00345 PF03960 ArsC family LCQ53_00350 PF00768 D-alanyl-D-alanine carboxypeptidase LCQ53_00350 PF07943 Penicillin-binding protein 5, C-terminal domain LCQ53_00355 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_00355 PF17152 Periplasmic sensor domain LCQ53_00360 PF03707 Bacterial signalling protein N terminal repeat LCQ53_00360 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_00360 PF00563 EAL domain LCQ53_00365 PF06962 Putative rRNA methylase LCQ53_00375 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain LCQ53_00375 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain LCQ53_00380 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LCQ53_00380 PF00056 lactate/malate dehydrogenase, NAD binding domain LCQ53_00395 PF00704 Glycosyl hydrolases family 18 LCQ53_00395 PF01476 LysM domain LCQ53_00410 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LCQ53_00415 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family LCQ53_00420 PF03707 Bacterial signalling protein N terminal repeat LCQ53_00420 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_00420 PF00563 EAL domain LCQ53_00425 PF03707 Bacterial signalling protein N terminal repeat LCQ53_00425 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_00425 PF00563 EAL domain LCQ53_00435 PF17152 Periplasmic sensor domain LCQ53_00435 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_00440 PF01551 Peptidase family M23 LCQ53_00445 PF00072 Response regulator receiver domain LCQ53_00445 PF01627 Hpt domain LCQ53_00445 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_00445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_00445 PF00672 HAMP domain LCQ53_00445 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LCQ53_00460 PF01590 GAF domain LCQ53_00460 PF00360 Phytochrome region LCQ53_00460 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_00460 PF00563 EAL domain LCQ53_00475 PF00155 Aminotransferase class I and II LCQ53_00490 PF13419 Haloacid dehalogenase-like hydrolase LCQ53_00500 PF01381 Helix-turn-helix LCQ53_00505 PF01012 Electron transfer flavoprotein domain LCQ53_00505 PF00766 Electron transfer flavoprotein FAD-binding domain LCQ53_00510 PF01012 Electron transfer flavoprotein domain LCQ53_00515 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LCQ53_00515 PF02770 Acyl-CoA dehydrogenase, middle domain LCQ53_00515 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LCQ53_00520 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LCQ53_00520 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LCQ53_00525 PF00378 Enoyl-CoA hydratase/isomerase LCQ53_00530 PF02803 Thiolase, C-terminal domain LCQ53_00530 PF00108 Thiolase, N-terminal domain LCQ53_00540 PF00011 Hsp20/alpha crystallin family LCQ53_00545 PF10369 Small subunit of acetolactate synthase LCQ53_00550 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LCQ53_00550 PF00205 Thiamine pyrophosphate enzyme, central domain LCQ53_00550 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LCQ53_00555 PF04079 Segregation and condensation complex subunit ScpB LCQ53_00560 PF02616 Segregation and condensation protein ScpA LCQ53_00565 PF00149 Calcineurin-like phosphoesterase LCQ53_00575 PF03612 Sorbitol phosphotransferase enzyme II N-terminus LCQ53_00575 PF07663 Sorbitol phosphotransferase enzyme II C-terminus LCQ53_00580 PF03608 PTS system enzyme II sorbitol-specific factor LCQ53_00590 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_00590 PF05043 Mga helix-turn-helix domain LCQ53_00590 PF00874 PRD domain LCQ53_00590 PF08279 HTH domain LCQ53_00595 PF00106 short chain dehydrogenase LCQ53_00600 PF00768 D-alanyl-D-alanine carboxypeptidase LCQ53_00600 PF07943 Penicillin-binding protein 5, C-terminal domain LCQ53_00605 PF00293 NUDIX domain LCQ53_00610 PF00905 Penicillin binding protein transpeptidase domain LCQ53_00615 PF01098 Cell cycle protein LCQ53_00620 PF01136 Peptidase family U32 LCQ53_00620 PF16325 Peptidase family U32 C-terminal domain LCQ53_00630 PF17864 RuvB AAA lid domain LCQ53_00630 PF05491 RuvB C-terminal winged helix domain LCQ53_00630 PF05496 Holliday junction DNA helicase RuvB P-loop domain LCQ53_00635 PF01330 RuvA N terminal domain LCQ53_00635 PF07499 RuvA, C-terminal domain LCQ53_00650 PF04172 LrgB-like family LCQ53_00670 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin LCQ53_00670 PF18277 AbrB C-terminal domain LCQ53_00690 PF01053 Cys/Met metabolism PLP-dependent enzyme LCQ53_00695 PF00005 ABC transporter LCQ53_00700 PF02653 Branched-chain amino acid transport system / permease component LCQ53_00715 PF00575 S1 RNA binding domain LCQ53_00715 PF03725 3' exoribonuclease family, domain 2 LCQ53_00715 PF00013 KH domain LCQ53_00715 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LCQ53_00715 PF01138 3' exoribonuclease family, domain 1 LCQ53_00720 PF00312 Ribosomal protein S15 LCQ53_00725 PF14748 Pyrroline-5-carboxylate reductase dimerisation LCQ53_00725 PF03807 NADP oxidoreductase coenzyme F420-dependent LCQ53_00730 PF00849 RNA pseudouridylate synthase LCQ53_00730 PF01479 S4 domain LCQ53_00735 PF01252 Signal peptidase (SPase) II LCQ53_00740 PF01761 3-dehydroquinate synthase LCQ53_00755 PF04472 Cell division protein SepF LCQ53_00760 PF01168 Alanine racemase, N-terminal domain LCQ53_00770 PF04055 Radical SAM superfamily LCQ53_00770 PF16199 Radical_SAM C-terminal domain LCQ53_00775 PF07943 Penicillin-binding protein 5, C-terminal domain LCQ53_00775 PF00768 D-alanyl-D-alanine carboxypeptidase LCQ53_00780 PF02142 MGS-like domain LCQ53_00785 PF01098 Cell cycle protein LCQ53_00790 PF03776 Septum formation topological specificity factor MinE LCQ53_00795 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LCQ53_00800 PF03775 Septum formation inhibitor MinC, C-terminal domain LCQ53_00805 PF03717 Penicillin-binding Protein dimerisation domain LCQ53_00805 PF00905 Penicillin binding protein transpeptidase domain LCQ53_00825 PF04002 RadC-like JAB domain LCQ53_00830 PF06838 Methionine gamma-lyase LCQ53_00840 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LCQ53_00845 PF01119 DNA mismatch repair protein, C-terminal domain LCQ53_00845 PF08676 MutL C terminal dimerisation domain LCQ53_00850 PF01624 MutS domain I LCQ53_00850 PF05188 MutS domain II LCQ53_00850 PF05192 MutS domain III LCQ53_00850 PF05190 MutS family domain IV LCQ53_00850 PF00488 MutS domain V LCQ53_00855 PF01938 TRAM domain LCQ53_00855 PF04055 Radical SAM superfamily LCQ53_00855 PF00919 Uncharacterized protein family UPF0004 LCQ53_00860 PF03275 UDP-galactopyranose mutase LCQ53_00865 PF02690 Na+/Pi-cotransporter LCQ53_00870 PF00128 Alpha amylase, catalytic domain LCQ53_00870 PF02903 Alpha amylase, N-terminal ig-like domain LCQ53_00875 PF00343 Carbohydrate phosphorylase LCQ53_00880 PF08323 Starch synthase catalytic domain LCQ53_00880 PF00534 Glycosyl transferases group 1 LCQ53_00885 PF00483 Nucleotidyl transferase LCQ53_00890 PF00483 Nucleotidyl transferase LCQ53_00895 PF00128 Alpha amylase, catalytic domain LCQ53_00895 PF02806 Alpha amylase, C-terminal all-beta domain LCQ53_00895 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LCQ53_00900 PF13291 ACT domain LCQ53_00900 PF00291 Pyridoxal-phosphate dependent enzyme LCQ53_00905 PF00448 SRP54-type protein, GTPase domain LCQ53_00905 PF02881 SRP54-type protein, helical bundle domain LCQ53_00910 PF02463 RecF/RecN/SMC N terminal domain LCQ53_00910 PF06470 SMC proteins Flexible Hinge Domain LCQ53_00915 PF00035 Double-stranded RNA binding motif LCQ53_00915 PF14622 Ribonuclease-III-like LCQ53_00920 PF02504 Fatty acid synthesis protein LCQ53_00925 PF01783 Ribosomal L32p protein family LCQ53_00935 PF00871 Acetokinase family LCQ53_00940 PF01515 Phosphate acetyl/butaryl transferase LCQ53_00945 PF05636 HIGH Nucleotidyl Transferase LCQ53_00950 PF07670 Nucleoside recognition LCQ53_00960 PF01467 Cytidylyltransferase-like LCQ53_00970 PF00269 Small, acid-soluble spore proteins, alpha/beta type LCQ53_00975 PF00708 Acylphosphatase LCQ53_00980 PF00270 DEAD/DEAH box helicase LCQ53_00980 PF00271 Helicase conserved C-terminal domain LCQ53_00980 PF17191 RecG wedge domain LCQ53_00985 PF13684 Dihydroxyacetone kinase family LCQ53_00985 PF02734 DAK2 domain LCQ53_00995 PF00830 Ribosomal L28 family LCQ53_01020 PF00391 PEP-utilising enzyme, mobile domain LCQ53_01020 PF00224 Pyruvate kinase, barrel domain LCQ53_01020 PF02887 Pyruvate kinase, alpha/beta domain LCQ53_01045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LCQ53_01045 PF03466 LysR substrate binding domain LCQ53_01055 PF00392 Bacterial regulatory proteins, gntR family LCQ53_01060 PF00005 ABC transporter LCQ53_01075 PF00977 Histidine biosynthesis protein LCQ53_01080 PF00117 Glutamine amidotransferase class-I LCQ53_01090 PF18698 Histidine kinase sensor domain LCQ53_01090 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_01090 PF00672 HAMP domain LCQ53_01090 PF00989 PAS fold LCQ53_01090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_01095 PF00486 Transcriptional regulatory protein, C terminal LCQ53_01095 PF00072 Response regulator receiver domain LCQ53_01120 PF01592 NifU-like N terminal domain LCQ53_01125 PF00266 Aminotransferase class-V LCQ53_01130 PF02082 Transcriptional regulator LCQ53_01135 PF01943 Polysaccharide biosynthesis protein LCQ53_01135 PF14667 Polysaccharide biosynthesis C-terminal domain LCQ53_01140 PF02653 Branched-chain amino acid transport system / permease component LCQ53_01145 PF02653 Branched-chain amino acid transport system / permease component LCQ53_01150 PF00005 ABC transporter LCQ53_01155 PF02608 ABC transporter substrate-binding protein PnrA-like LCQ53_01160 PF00579 tRNA synthetases class I (W and Y) LCQ53_01185 PF00149 Calcineurin-like phosphoesterase LCQ53_01190 PF08281 Sigma-70, region 4 LCQ53_01190 PF04542 Sigma-70 region 2 LCQ53_01195 PF00588 SpoU rRNA Methylase family LCQ53_01195 PF08032 RNA 2'-O ribose methyltransferase substrate binding LCQ53_01200 PF00636 Ribonuclease III domain LCQ53_01205 PF09190 DALR domain LCQ53_01205 PF01406 tRNA synthetases class I (C) catalytic domain LCQ53_01210 PF00132 Bacterial transferase hexapeptide (six repeats) LCQ53_01220 PF00005 ABC transporter LCQ53_01225 PF02632 BioY family LCQ53_01230 PF06968 Biotin and Thiamin Synthesis associated domain LCQ53_01230 PF04055 Radical SAM superfamily LCQ53_01245 PF00072 Response regulator receiver domain LCQ53_01245 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_01245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_01245 PF01627 Hpt domain LCQ53_01250 PF00689 Cation transporting ATPase, C-terminus LCQ53_01250 PF00690 Cation transporter/ATPase, N-terminus LCQ53_01255 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LCQ53_01255 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain LCQ53_01260 PF02874 ATP synthase alpha/beta family, beta-barrel domain LCQ53_01260 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LCQ53_01265 PF00231 ATP synthase LCQ53_01270 PF02874 ATP synthase alpha/beta family, beta-barrel domain LCQ53_01270 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LCQ53_01270 PF00306 ATP synthase alpha/beta chain, C terminal domain LCQ53_01275 PF00213 ATP synthase delta (OSCP) subunit LCQ53_01280 PF00430 ATP synthase B/B' CF(0) LCQ53_01285 PF00137 ATP synthase subunit C LCQ53_01290 PF00119 ATP synthase A chain LCQ53_01335 PF00580 UvrD/REP helicase N-terminal domain LCQ53_01335 PF13361 UvrD-like helicase C-terminal domain LCQ53_01345 PF01371 Trp repressor protein LCQ53_01365 PF00005 ABC transporter LCQ53_01370 PF07730 Histidine kinase LCQ53_01375 PF00072 Response regulator receiver domain LCQ53_01375 PF00196 Bacterial regulatory proteins, luxR family LCQ53_01380 PF00571 CBS domain LCQ53_01380 PF03471 Transporter associated domain LCQ53_01380 PF01595 Cyclin M transmembrane N-terminal domain LCQ53_01390 PF00580 UvrD/REP helicase N-terminal domain LCQ53_01390 PF13361 UvrD-like helicase C-terminal domain LCQ53_01395 PF00749 tRNA synthetases class I (E and Q), catalytic domain LCQ53_01400 PF01926 50S ribosome-binding GTPase LCQ53_01400 PF12631 MnmE helical domain LCQ53_01400 PF10396 GTP-binding protein TrmE N-terminus LCQ53_01410 PF03932 CutC family LCQ53_01425 PF05524 PEP-utilising enzyme, N-terminal LCQ53_01425 PF00391 PEP-utilising enzyme, mobile domain LCQ53_01425 PF02896 PEP-utilising enzyme, TIM barrel domain LCQ53_01430 PF00381 PTS HPr component phosphorylation site LCQ53_01435 PF03123 CAT RNA binding domain LCQ53_01435 PF00874 PRD domain LCQ53_01440 PF16360 GTP-binding GTPase Middle Region LCQ53_01440 PF13167 GTP-binding GTPase N-terminal LCQ53_01440 PF01926 50S ribosome-binding GTPase LCQ53_01460 PF00106 short chain dehydrogenase LCQ53_01465 PF01418 Helix-turn-helix domain, rpiR family LCQ53_01465 PF01380 SIS domain LCQ53_01470 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_01470 PF00107 Zinc-binding dehydrogenase LCQ53_01475 PF03613 PTS system mannose/fructose/sorbose family IID component LCQ53_01480 PF03609 PTS system sorbose-specific iic component LCQ53_01485 PF03610 PTS system fructose IIA component LCQ53_01485 PF03830 PTS system sorbose subfamily IIB component LCQ53_01490 PF03610 PTS system fructose IIA component LCQ53_01500 PF01554 MatE LCQ53_01505 PF00082 Subtilase family LCQ53_01505 PF02225 PA domain LCQ53_01505 PF06280 Fn3-like domain LCQ53_01505 PF00746 LPXTG cell wall anchor motif LCQ53_01515 PF00528 Binding-protein-dependent transport system inner membrane component LCQ53_01520 PF17845 FbpC C-terminal regulatory nucleotide binding domain LCQ53_01520 PF00005 ABC transporter LCQ53_01525 PF12804 MobA-like NTP transferase domain LCQ53_01525 PF00132 Bacterial transferase hexapeptide (six repeats) LCQ53_01525 PF14602 Hexapeptide repeat of succinyl-transferase LCQ53_01530 PF13478 XdhC Rossmann domain LCQ53_01530 PF02625 XdhC and CoxI family LCQ53_01535 PF00557 Metallopeptidase family M24 LCQ53_01535 PF02810 SEC-C motif LCQ53_01545 PF00005 ABC transporter LCQ53_01545 PF13732 Domain of unknown function (DUF4162) LCQ53_01550 PF00440 Bacterial regulatory proteins, tetR family LCQ53_01550 PF08362 YcdC-like protein, C-terminal region LCQ53_01555 PF13091 PLD-like domain LCQ53_01580 PF00005 ABC transporter LCQ53_01580 PF13732 Domain of unknown function (DUF4162) LCQ53_01600 PF00056 lactate/malate dehydrogenase, NAD binding domain LCQ53_01600 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LCQ53_01605 PF00563 EAL domain LCQ53_01605 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_01605 PF03707 Bacterial signalling protein N terminal repeat LCQ53_01615 PF02645 Uncharacterised protein, DegV family COG1307 LCQ53_01620 PF00994 Probable molybdopterin binding domain LCQ53_01630 PF01967 MoaC family LCQ53_01640 PF02625 XdhC and CoxI family LCQ53_01640 PF13478 XdhC Rossmann domain LCQ53_01645 PF01979 Amidohydrolase family LCQ53_01650 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain LCQ53_01650 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase LCQ53_01650 PF01799 [2Fe-2S] binding domain LCQ53_01650 PF00111 2Fe-2S iron-sulfur cluster binding domain LCQ53_01655 PF00860 Permease family LCQ53_01660 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LCQ53_01660 PF07992 Pyridine nucleotide-disulphide oxidoreductase LCQ53_01665 PF01979 Amidohydrolase family LCQ53_01675 PF00291 Pyridoxal-phosphate dependent enzyme LCQ53_01680 PF07687 Peptidase dimerisation domain LCQ53_01680 PF01546 Peptidase family M20/M25/M40 LCQ53_01685 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LCQ53_01685 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LCQ53_01690 PF00696 Amino acid kinase family LCQ53_01695 PF09278 MerR, DNA binding LCQ53_01695 PF00376 MerR family regulatory protein LCQ53_01700 PF00376 MerR family regulatory protein LCQ53_01700 PF09278 MerR, DNA binding LCQ53_01705 PF18389 TrmO C-terminal domain LCQ53_01705 PF01980 tRNA-methyltransferase O LCQ53_01715 PF00085 Thioredoxin LCQ53_01730 PF01381 Helix-turn-helix LCQ53_01740 PF00877 NlpC/P60 family LCQ53_01750 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LCQ53_01750 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LCQ53_01760 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LCQ53_01760 PF01842 ACT domain LCQ53_01760 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LCQ53_01765 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LCQ53_01765 PF07992 Pyridine nucleotide-disulphide oxidoreductase LCQ53_01770 PF00465 Iron-containing alcohol dehydrogenase LCQ53_01775 PF00596 Class II Aldolase and Adducin N-terminal domain LCQ53_01780 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_01780 PF00874 PRD domain LCQ53_01780 PF05043 Mga helix-turn-helix domain LCQ53_01780 PF08279 HTH domain LCQ53_01785 PF00453 Ribosomal protein L20 LCQ53_01790 PF01632 Ribosomal protein L35 LCQ53_01795 PF05198 Translation initiation factor IF-3, N-terminal domain LCQ53_01795 PF00707 Translation initiation factor IF-3, C-terminal domain LCQ53_01800 PF00009 Elongation factor Tu GTP binding domain LCQ53_01800 PF03144 Elongation factor Tu domain 2 LCQ53_01800 PF16658 Class II release factor RF3, C-terminal domain LCQ53_01805 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LCQ53_01810 PF00005 ABC transporter LCQ53_01810 PF00571 CBS domain LCQ53_01825 PF08279 HTH domain LCQ53_01825 PF13280 WYL domain LCQ53_01830 PF01263 Aldose 1-epimerase LCQ53_01835 PF13419 Haloacid dehalogenase-like hydrolase LCQ53_01840 PF04073 Aminoacyl-tRNA editing domain LCQ53_01845 PF00294 pfkB family carbohydrate kinase LCQ53_01850 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_01850 PF00107 Zinc-binding dehydrogenase LCQ53_01855 PF01116 Fructose-bisphosphate aldolase class-II LCQ53_01860 PF03611 PTS system sugar-specific permease component LCQ53_01865 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_01875 PF05043 Mga helix-turn-helix domain LCQ53_01875 PF08279 HTH domain LCQ53_01875 PF00874 PRD domain LCQ53_01875 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_01885 PF12704 MacB-like periplasmic core domain LCQ53_01885 PF02687 FtsX-like permease family LCQ53_01890 PF12704 MacB-like periplasmic core domain LCQ53_01890 PF02687 FtsX-like permease family LCQ53_01890 PF00005 ABC transporter LCQ53_01900 PF04055 Radical SAM superfamily LCQ53_01900 PF16199 Radical_SAM C-terminal domain LCQ53_01910 PF13344 Haloacid dehalogenase-like hydrolase LCQ53_01915 PF13685 Iron-containing alcohol dehydrogenase LCQ53_01925 PF13685 Iron-containing alcohol dehydrogenase LCQ53_01930 PF02502 Ribose/Galactose Isomerase LCQ53_01935 PF07663 Sorbitol phosphotransferase enzyme II C-terminus LCQ53_01935 PF03612 Sorbitol phosphotransferase enzyme II N-terminus LCQ53_01940 PF03608 PTS system enzyme II sorbitol-specific factor LCQ53_01960 PF02637 GatB domain LCQ53_01960 PF02934 GatB/GatE catalytic domain LCQ53_01965 PF01425 Amidase LCQ53_01970 PF02686 Glu-tRNAGln amidotransferase C subunit LCQ53_01995 PF16745 RsgA N-terminal domain LCQ53_01995 PF03193 RsgA GTPase LCQ53_02000 PF00069 Protein kinase domain LCQ53_02000 PF03793 PASTA domain LCQ53_02010 PF04055 Radical SAM superfamily LCQ53_02015 PF01189 16S rRNA methyltransferase RsmB/F LCQ53_02015 PF01029 NusB family LCQ53_02020 PF00551 Formyl transferase LCQ53_02020 PF02911 Formyl transferase, C-terminal domain LCQ53_02025 PF01327 Polypeptide deformylase LCQ53_02030 PF00271 Helicase conserved C-terminal domain LCQ53_02030 PF17764 3′ DNA-binding domain (3′BD) LCQ53_02030 PF18074 Primosomal protein N C-terminal domain LCQ53_02030 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LCQ53_02030 PF04851 Type III restriction enzyme, res subunit LCQ53_02035 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LCQ53_02035 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LCQ53_02035 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LCQ53_02035 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LCQ53_02040 PF01475 Ferric uptake regulator family LCQ53_02045 PF13286 Phosphohydrolase-associated domain LCQ53_02045 PF01966 HD domain LCQ53_02050 PF02666 Phosphatidylserine decarboxylase LCQ53_02055 PF01066 CDP-alcohol phosphatidyltransferase LCQ53_02070 PF00873 AcrB/AcrD/AcrF family LCQ53_02075 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LCQ53_02075 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LCQ53_02080 PF00571 CBS domain LCQ53_02080 PF00478 IMP dehydrogenase / GMP reductase domain LCQ53_02090 PF07992 Pyridine nucleotide-disulphide oxidoreductase LCQ53_02090 PF13247 4Fe-4S dicluster domain LCQ53_02090 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LCQ53_02095 PF00175 Oxidoreductase NAD-binding domain LCQ53_02095 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B LCQ53_02105 PF00118 TCP-1/cpn60 chaperonin family LCQ53_02110 PF00166 Chaperonin 10 Kd subunit LCQ53_02115 PF04229 GrpB protein LCQ53_02120 PF00749 tRNA synthetases class I (E and Q), catalytic domain LCQ53_02120 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LCQ53_02125 PF18073 Rubredoxin metal binding domain LCQ53_02135 PF00004 ATPase family associated with various cellular activities (AAA) LCQ53_02135 PF02861 Clp amino terminal domain, pathogenicity island component LCQ53_02135 PF17871 AAA lid domain LCQ53_02135 PF10431 C-terminal, D2-small domain, of ClpB protein LCQ53_02135 PF07724 AAA domain (Cdc48 subfamily) LCQ53_02145 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LCQ53_02145 PF02843 Phosphoribosylglycinamide synthetase, C domain LCQ53_02145 PF02844 Phosphoribosylglycinamide synthetase, N domain LCQ53_02150 PF00551 Formyl transferase LCQ53_02155 PF00586 AIR synthase related protein, N-terminal domain LCQ53_02155 PF02769 AIR synthase related protein, C-terminal domain LCQ53_02165 PF00731 AIR carboxylase LCQ53_02190 PF00156 Phosphoribosyl transferase domain LCQ53_02200 PF01180 Dihydroorotate dehydrogenase LCQ53_02205 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B LCQ53_02205 PF00175 Oxidoreductase NAD-binding domain LCQ53_02210 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LCQ53_02215 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_02215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_02215 PF16736 Single Cache-like LCQ53_02215 PF00989 PAS fold LCQ53_02220 PF00486 Transcriptional regulatory protein, C terminal LCQ53_02220 PF00072 Response regulator receiver domain LCQ53_02225 PF01895 PhoU domain LCQ53_02230 PF00005 ABC transporter LCQ53_02235 PF00528 Binding-protein-dependent transport system inner membrane component LCQ53_02240 PF00528 Binding-protein-dependent transport system inner membrane component LCQ53_02245 PF12849 PBP superfamily domain LCQ53_02255 PF01979 Amidohydrolase family LCQ53_02265 PF00158 Sigma-54 interaction domain LCQ53_02265 PF00989 PAS fold LCQ53_02265 PF02954 Bacterial regulatory protein, Fis family LCQ53_02275 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal LCQ53_02275 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal LCQ53_02295 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LCQ53_02295 PF03129 Anticodon binding domain LCQ53_02300 PF11967 Recombination protein O N terminal LCQ53_02300 PF02565 Recombination protein O C terminal LCQ53_02305 PF01926 50S ribosome-binding GTPase LCQ53_02305 PF07650 KH domain LCQ53_02310 PF00675 Insulinase (Peptidase family M16) LCQ53_02310 PF08367 Peptidase M16C associated LCQ53_02310 PF05193 Peptidase M16 inactive domain LCQ53_02330 PF13411 MerR HTH family regulatory protein LCQ53_02330 PF07739 TipAS antibiotic-recognition domain LCQ53_02335 PF01808 AICARFT/IMPCHase bienzyme LCQ53_02335 PF02142 MGS-like domain LCQ53_02345 PF02142 MGS-like domain LCQ53_02360 PF01183 Glycosyl hydrolases family 25 LCQ53_02365 PF04545 Sigma-70, region 4 LCQ53_02365 PF04542 Sigma-70 region 2 LCQ53_02375 PF00091 Tubulin/FtsZ family, GTPase domain LCQ53_02375 PF12327 FtsZ family, C-terminal domain LCQ53_02385 PF01098 Cell cycle protein LCQ53_02390 PF08245 Mur ligase middle domain LCQ53_02390 PF02875 Mur ligase family, glutamate ligase domain LCQ53_02395 PF00953 Glycosyl transferase family 4 LCQ53_02395 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 LCQ53_02400 PF03793 PASTA domain LCQ53_02400 PF00905 Penicillin binding protein transpeptidase domain LCQ53_02400 PF03717 Penicillin-binding Protein dimerisation domain LCQ53_02405 PF03793 PASTA domain LCQ53_02405 PF03717 Penicillin-binding Protein dimerisation domain LCQ53_02405 PF00905 Penicillin binding protein transpeptidase domain LCQ53_02415 PF01795 MraW methylase family LCQ53_02420 PF02381 MraZ protein, putative antitoxin-like LCQ53_02425 PF01790 Prolipoprotein diacylglyceryl transferase LCQ53_02430 PF06071 Protein of unknown function (DUF933) LCQ53_02430 PF01926 50S ribosome-binding GTPase LCQ53_02435 PF00877 NlpC/P60 family LCQ53_02440 PF00155 Aminotransferase class I and II LCQ53_02450 PF00120 Glutamine synthetase, catalytic domain LCQ53_02450 PF03951 Glutamine synthetase, beta-Grasp domain LCQ53_02455 PF02142 MGS-like domain LCQ53_02455 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LCQ53_02455 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LCQ53_02460 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LCQ53_02460 PF00117 Glutamine amidotransferase class-I LCQ53_02465 PF02677 Epoxyqueuosine reductase QueH LCQ53_02470 PF01906 Putative heavy-metal-binding LCQ53_02545 PF01471 Putative peptidoglycan binding domain LCQ53_02545 PF01510 N-acetylmuramoyl-L-alanine amidase LCQ53_02575 PF04865 Baseplate J-like protein LCQ53_02580 PF10934 Protein of unknown function (DUF2634) LCQ53_02610 PF09393 Phage tail tube protein LCQ53_02705 PF12961 Domain of unknown function (DUF3850) LCQ53_02825 PF09827 CRISPR associated protein Cas2 LCQ53_02830 PF01867 CRISPR associated protein Cas1 LCQ53_02870 PF01795 MraW methylase family LCQ53_02880 PF13411 MerR HTH family regulatory protein LCQ53_02880 PF06445 GyrI-like small molecule binding domain LCQ53_02885 PF01554 MatE LCQ53_02890 PF03030 Inorganic H+ pyrophosphatase LCQ53_02895 PF01063 Amino-transferase class IV LCQ53_02900 PF00186 Dihydrofolate reductase LCQ53_02905 PF00303 Thymidylate synthase LCQ53_02910 PF01594 AI-2E family transporter LCQ53_02920 PF00155 Aminotransferase class I and II LCQ53_02925 PF00155 Aminotransferase class I and II LCQ53_02930 PF05173 Dihydrodipicolinate reductase, C-terminus LCQ53_02930 PF01113 Dihydrodipicolinate reductase, N-terminus LCQ53_02935 PF00701 Dihydrodipicolinate synthetase family LCQ53_02940 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP LCQ53_02950 PF00679 Elongation factor G C-terminus LCQ53_02950 PF00009 Elongation factor Tu GTP binding domain LCQ53_02950 PF03144 Elongation factor Tu domain 2 LCQ53_02960 PF06968 Biotin and Thiamin Synthesis associated domain LCQ53_02960 PF04055 Radical SAM superfamily LCQ53_02980 PF00132 Bacterial transferase hexapeptide (six repeats) LCQ53_02985 PF06874 Firmicute fructose-1,6-bisphosphatase LCQ53_02990 PF07724 AAA domain (Cdc48 subfamily) LCQ53_02990 PF10431 C-terminal, D2-small domain, of ClpB protein LCQ53_02990 PF06689 ClpX C4-type zinc finger LCQ53_02995 PF00155 Aminotransferase class I and II LCQ53_02995 PF00392 Bacterial regulatory proteins, gntR family LCQ53_03000 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LCQ53_03005 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LCQ53_03005 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LCQ53_03010 PF00664 ABC transporter transmembrane region LCQ53_03010 PF00005 ABC transporter LCQ53_03015 PF00664 ABC transporter transmembrane region LCQ53_03015 PF00005 ABC transporter LCQ53_03020 PF01047 MarR family LCQ53_03025 PF07859 alpha/beta hydrolase fold LCQ53_03040 PF02810 SEC-C motif LCQ53_03040 PF07517 SecA DEAD-like domain LCQ53_03040 PF01043 SecA preprotein cross-linking domain LCQ53_03040 PF07516 SecA Wing and Scaffold domain LCQ53_03045 PF01022 Bacterial regulatory protein, arsR family LCQ53_03050 PF03773 Predicted permease LCQ53_03055 PF13350 Tyrosine phosphatase family LCQ53_03065 PF00248 Aldo/keto reductase family LCQ53_03070 PF16193 AAA C-terminal domain LCQ53_03070 PF12002 MgsA AAA+ ATPase C terminal LCQ53_03070 PF05496 Holliday junction DNA helicase RuvB P-loop domain LCQ53_03080 PF12116 Stage III sporulation protein D LCQ53_03085 PF00768 D-alanyl-D-alanine carboxypeptidase LCQ53_03085 PF07943 Penicillin-binding protein 5, C-terminal domain LCQ53_03090 PF02492 CobW/HypB/UreG, nucleotide-binding domain LCQ53_03090 PF07683 Cobalamin synthesis protein cobW C-terminal domain LCQ53_03095 PF07683 Cobalamin synthesis protein cobW C-terminal domain LCQ53_03095 PF02492 CobW/HypB/UreG, nucleotide-binding domain LCQ53_03115 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain LCQ53_03115 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase LCQ53_03120 PF03450 CO dehydrogenase flavoprotein C-terminal domain LCQ53_03120 PF00941 FAD binding domain in molybdopterin dehydrogenase LCQ53_03125 PF01799 [2Fe-2S] binding domain LCQ53_03125 PF00111 2Fe-2S iron-sulfur cluster binding domain LCQ53_03140 PF00313 'Cold-shock' DNA-binding domain LCQ53_03145 PF08220 DeoR-like helix-turn-helix domain LCQ53_03145 PF00455 DeoR C terminal sensor domain LCQ53_03150 PF02378 Phosphotransferase system, EIIC LCQ53_03150 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_03150 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_03155 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LCQ53_03155 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LCQ53_03160 PF01791 DeoC/LacD family aldolase LCQ53_03170 PF00795 Carbon-nitrogen hydrolase LCQ53_03170 PF02540 NAD synthase LCQ53_03175 PF00472 RF-1 domain LCQ53_03175 PF03462 PCRF domain LCQ53_03180 PF05175 Methyltransferase small domain LCQ53_03180 PF17827 PrmC N-terminal domain LCQ53_03185 PF07136 Protein of unknown function (DUF1385) LCQ53_03190 PF01197 Ribosomal protein L31 LCQ53_03195 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LCQ53_03195 PF07497 Rho termination factor, RNA-binding domain LCQ53_03195 PF07498 Rho termination factor, N-terminal domain LCQ53_03200 PF04542 Sigma-70 region 2 LCQ53_03200 PF04545 Sigma-70, region 4 LCQ53_03200 PF04539 Sigma-70 region 3 LCQ53_03205 PF13581 Histidine kinase-like ATPase domain LCQ53_03210 PF01740 STAS domain LCQ53_03225 PF02875 Mur ligase family, glutamate ligase domain LCQ53_03225 PF08245 Mur ligase middle domain LCQ53_03230 PF08264 Anticodon-binding domain of tRNA LCQ53_03230 PF00133 tRNA synthetases class I (I, L, M and V) LCQ53_03230 PF10458 Valyl tRNA synthetase tRNA binding arm LCQ53_03255 PF00155 Aminotransferase class I and II LCQ53_03280 PF00285 Citrate synthase, C-terminal domain LCQ53_03285 PF00005 ABC transporter LCQ53_03290 PF00528 Binding-protein-dependent transport system inner membrane component LCQ53_03295 PF00497 Bacterial extracellular solute-binding proteins, family 3 LCQ53_03305 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase LCQ53_03305 PF05036 Sporulation related domain LCQ53_03305 PF08239 Bacterial SH3 domain LCQ53_03335 PF04542 Sigma-70 region 2 LCQ53_03335 PF04545 Sigma-70, region 4 LCQ53_03335 PF04539 Sigma-70 region 3 LCQ53_03335 PF03979 Sigma-70 factor, region 1.1 LCQ53_03335 PF00140 Sigma-70 factor, region 1.2 LCQ53_03340 PF00290 Tryptophan synthase alpha chain LCQ53_03345 PF00291 Pyridoxal-phosphate dependent enzyme LCQ53_03350 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LCQ53_03355 PF00218 Indole-3-glycerol phosphate synthase LCQ53_03360 PF00117 Glutamine amidotransferase class-I LCQ53_03360 PF02885 Glycosyl transferase family, helical bundle domain LCQ53_03360 PF00591 Glycosyl transferase family, a/b domain LCQ53_03365 PF04715 Anthranilate synthase component I, N terminal region LCQ53_03365 PF00425 chorismate binding enzyme LCQ53_03375 PF00180 Isocitrate/isopropylmalate dehydrogenase LCQ53_03380 PF00037 4Fe-4S binding domain LCQ53_03380 PF02906 Iron only hydrogenase large subunit, C-terminal domain LCQ53_03380 PF02256 Iron hydrogenase small subunit LCQ53_03380 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LCQ53_03385 PF07992 Pyridine nucleotide-disulphide oxidoreductase LCQ53_03385 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LCQ53_03390 PF00302 Chloramphenicol acetyltransferase LCQ53_03395 PF02645 Uncharacterised protein, DegV family COG1307 LCQ53_03410 PF13180 PDZ domain LCQ53_03415 PF02397 Bacterial sugar transferase LCQ53_03420 PF03816 Cell envelope-related transcriptional attenuator domain LCQ53_03435 PF00072 Response regulator receiver domain LCQ53_03435 PF08769 Sporulation initiation factor Spo0A C terminal LCQ53_03440 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain LCQ53_03440 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain LCQ53_03445 PF00465 Iron-containing alcohol dehydrogenase LCQ53_03450 PF01575 MaoC like domain LCQ53_03455 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_03455 PF00107 Zinc-binding dehydrogenase LCQ53_03460 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LCQ53_03460 PF07992 Pyridine nucleotide-disulphide oxidoreductase LCQ53_03465 PF02126 Phosphotriesterase family LCQ53_03470 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LCQ53_03470 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LCQ53_03475 PF01116 Fructose-bisphosphate aldolase class-II LCQ53_03480 PF03611 PTS system sugar-specific permease component LCQ53_03495 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_03495 PF05043 Mga helix-turn-helix domain LCQ53_03495 PF00874 PRD domain LCQ53_03495 PF08279 HTH domain LCQ53_03500 PF00596 Class II Aldolase and Adducin N-terminal domain LCQ53_03505 PF00107 Zinc-binding dehydrogenase LCQ53_03505 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_03510 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase LCQ53_03515 PF00535 Glycosyl transferase family 2 LCQ53_03520 PF00535 Glycosyl transferase family 2 LCQ53_03520 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase LCQ53_03530 PF00483 Nucleotidyl transferase LCQ53_03535 PF01467 Cytidylyltransferase-like LCQ53_03540 PF00005 ABC transporter LCQ53_03545 PF01061 ABC-2 type transporter LCQ53_03555 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase LCQ53_03560 PF13472 GDSL-like Lipase/Acylhydrolase family LCQ53_03575 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase LCQ53_03590 PF00535 Glycosyl transferase family 2 LCQ53_03600 PF02719 Polysaccharide biosynthesis protein LCQ53_03605 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LCQ53_03615 PF00132 Bacterial transferase hexapeptide (six repeats) LCQ53_03620 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LCQ53_03620 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LCQ53_03625 PF00132 Bacterial transferase hexapeptide (six repeats) LCQ53_03625 PF12464 Maltose acetyltransferase LCQ53_03630 PF01575 MaoC like domain LCQ53_03640 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LCQ53_03640 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LCQ53_03640 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LCQ53_03645 PF02350 UDP-N-acetylglucosamine 2-epimerase LCQ53_03650 PF13537 Glutamine amidotransferase domain LCQ53_03650 PF00733 Asparagine synthase LCQ53_03660 PF03023 Lipid II flippase MurJ LCQ53_03680 PF02397 Bacterial sugar transferase LCQ53_03685 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LCQ53_03690 PF03009 Glycerophosphoryl diester phosphodiesterase family LCQ53_03695 PF01483 Proprotein convertase P-domain LCQ53_03695 PF00082 Subtilase family LCQ53_03705 PF04138 GtrA-like protein LCQ53_03715 PF00535 Glycosyl transferase family 2 LCQ53_03725 PF02457 DisA bacterial checkpoint controller nucleotide-binding LCQ53_03750 PF00152 tRNA synthetases class II (D, K and N) LCQ53_03750 PF01336 OB-fold nucleic acid binding domain LCQ53_03755 PF03449 Transcription elongation factor, N-terminal LCQ53_03755 PF01272 Transcription elongation factor, GreA/GreB, C-term LCQ53_03760 PF01207 Dihydrouridine synthase (Dus) LCQ53_03765 PF03309 Type III pantothenate kinase LCQ53_03775 PF02237 Biotin protein ligase C terminal domain LCQ53_03775 PF08279 HTH domain LCQ53_03775 PF03099 Biotin/lipoate A/B protein ligase family LCQ53_03780 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LCQ53_03780 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LCQ53_03790 PF00005 ABC transporter LCQ53_03795 PF00528 Binding-protein-dependent transport system inner membrane component LCQ53_03800 PF00497 Bacterial extracellular solute-binding proteins, family 3 LCQ53_03805 PF01145 SPFH domain / Band 7 family LCQ53_03815 PF08032 RNA 2'-O ribose methyltransferase substrate binding LCQ53_03815 PF00588 SpoU rRNA Methylase family LCQ53_03825 PF02386 Cation transport protein LCQ53_03830 PF00365 Phosphofructokinase LCQ53_03835 PF07733 Bacterial DNA polymerase III alpha NTPase domain LCQ53_03835 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LCQ53_03835 PF14579 Helix-hairpin-helix motif LCQ53_03835 PF02811 PHP domain LCQ53_03845 PF01225 Mur ligase family, catalytic domain LCQ53_03845 PF02875 Mur ligase family, glutamate ligase domain LCQ53_03845 PF08245 Mur ligase middle domain LCQ53_03850 PF00860 Permease family LCQ53_03855 PF12706 Beta-lactamase superfamily domain LCQ53_03860 PF00596 Class II Aldolase and Adducin N-terminal domain LCQ53_03865 PF02734 DAK2 domain LCQ53_03865 PF02733 Dak1 domain LCQ53_03870 PF02733 Dak1 domain LCQ53_03880 PF03611 PTS system sugar-specific permease component LCQ53_03890 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_03895 PF00107 Zinc-binding dehydrogenase LCQ53_03895 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_03905 PF00209 Sodium:neurotransmitter symporter family LCQ53_03910 PF00672 HAMP domain LCQ53_03910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_03910 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_03915 PF00072 Response regulator receiver domain LCQ53_03915 PF00486 Transcriptional regulatory protein, C terminal LCQ53_03965 PF04865 Baseplate J-like protein LCQ53_03985 PF01476 LysM domain LCQ53_04105 PF16403 Domain of unknown function (DUF5011) LCQ53_04110 PF02311 AraC-like ligand binding domain LCQ53_04110 PF12833 Helix-turn-helix domain LCQ53_04135 PF00381 PTS HPr component phosphorylation site LCQ53_04140 PF02650 WhiA C-terminal HTH domain LCQ53_04140 PF14527 WhiA LAGLIDADG-like domain LCQ53_04140 PF10298 WhiA N-terminal LAGLIDADG-like domain LCQ53_04145 PF03668 P-loop ATPase protein family LCQ53_04150 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LCQ53_04150 PF01565 FAD binding domain LCQ53_04155 PF00480 ROK family LCQ53_04160 PF07475 HPr Serine kinase C-terminal domain LCQ53_04160 PF02603 HPr Serine kinase N terminus LCQ53_04165 PF02151 UvrB/uvrC motif LCQ53_04165 PF08459 UvrC Helix-hairpin-helix N-terminal LCQ53_04165 PF12826 Helix-hairpin-helix motif LCQ53_04165 PF01541 GIY-YIG catalytic domain LCQ53_04180 PF14489 QueF-like protein LCQ53_04190 PF00072 Response regulator receiver domain LCQ53_04190 PF00486 Transcriptional regulatory protein, C terminal LCQ53_04225 PF02833 DHHA2 domain LCQ53_04225 PF01368 DHH family LCQ53_04225 PF07085 DRTGG domain LCQ53_04225 PF00571 CBS domain LCQ53_04230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_04230 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_04235 PF00486 Transcriptional regulatory protein, C terminal LCQ53_04235 PF00072 Response regulator receiver domain LCQ53_04250 PF01964 Radical SAM ThiC family LCQ53_04255 PF00209 Sodium:neurotransmitter symporter family LCQ53_04260 PF07702 UTRA domain LCQ53_04260 PF00392 Bacterial regulatory proteins, gntR family LCQ53_04265 PF00072 Response regulator receiver domain LCQ53_04270 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LCQ53_04270 PF00672 HAMP domain LCQ53_04270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_04270 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_04270 PF01627 Hpt domain LCQ53_04270 PF00072 Response regulator receiver domain LCQ53_04275 PF00923 Transaldolase/Fructose-6-phosphate aldolase LCQ53_04280 PF04055 Radical SAM superfamily LCQ53_04285 PF02901 Pyruvate formate lyase-like LCQ53_04285 PF01228 Glycine radical LCQ53_04290 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_04300 PF00391 PEP-utilising enzyme, mobile domain LCQ53_04300 PF00381 PTS HPr component phosphorylation site LCQ53_04300 PF02896 PEP-utilising enzyme, TIM barrel domain LCQ53_04300 PF05524 PEP-utilising enzyme, N-terminal LCQ53_04300 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_04305 PF00834 Ribulose-phosphate 3 epimerase family LCQ53_04310 PF00874 PRD domain LCQ53_04310 PF05043 Mga helix-turn-helix domain LCQ53_04310 PF08279 HTH domain LCQ53_04310 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_04315 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LCQ53_04315 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LCQ53_04320 PF00890 FAD binding domain LCQ53_04325 PF02445 Quinolinate synthetase A protein LCQ53_04340 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LCQ53_04340 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LCQ53_04345 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_04345 PF00107 Zinc-binding dehydrogenase LCQ53_04350 PF03613 PTS system mannose/fructose/sorbose family IID component LCQ53_04360 PF03610 PTS system fructose IIA component LCQ53_04360 PF03830 PTS system sorbose subfamily IIB component LCQ53_04365 PF03610 PTS system fructose IIA component LCQ53_04370 PF01116 Fructose-bisphosphate aldolase class-II LCQ53_04395 PF01116 Fructose-bisphosphate aldolase class-II LCQ53_04405 PF03611 PTS system sugar-specific permease component LCQ53_04410 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_04420 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_04425 PF05043 Mga helix-turn-helix domain LCQ53_04425 PF00874 PRD domain LCQ53_04425 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_04425 PF08279 HTH domain LCQ53_04520 PF02368 Bacterial Ig-like domain (group 2) LCQ53_04565 PF04327 Cysteine protease Prp LCQ53_04590 PF03592 Terminase small subunit LCQ53_04590 PF10668 Phage terminase small subunit LCQ53_04665 PF01695 IstB-like ATP binding protein LCQ53_04725 PF10548 P22AR C-terminal domain LCQ53_04725 PF02498 BRO family, N-terminal domain LCQ53_04735 PF00717 Peptidase S24-like LCQ53_04735 PF01726 LexA DNA binding domain LCQ53_04760 PF10609 NUBPL iron-transfer P-loop NTPase LCQ53_04765 PF00834 Ribulose-phosphate 3 epimerase family LCQ53_04770 PF02690 Na+/Pi-cotransporter LCQ53_04775 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LCQ53_04775 PF10371 Domain of unknown function LCQ53_04775 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II LCQ53_04775 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase LCQ53_04775 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg LCQ53_04780 PF02618 YceG-like family LCQ53_04790 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LCQ53_04800 PF02861 Clp amino terminal domain, pathogenicity island component LCQ53_04800 PF17871 AAA lid domain LCQ53_04800 PF00004 ATPase family associated with various cellular activities (AAA) LCQ53_04800 PF07724 AAA domain (Cdc48 subfamily) LCQ53_04800 PF10431 C-terminal, D2-small domain, of ClpB protein LCQ53_04805 PF00440 Bacterial regulatory proteins, tetR family LCQ53_04805 PF17932 Tetracyclin repressor-like, C-terminal domain LCQ53_04810 PF07690 Major Facilitator Superfamily LCQ53_04815 PF17746 SfsA N-terminal OB domain LCQ53_04815 PF03749 Sugar fermentation stimulation protein RE domain LCQ53_04825 PF00005 ABC transporter LCQ53_04830 PF00528 Binding-protein-dependent transport system inner membrane component LCQ53_04835 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_04835 PF00072 Response regulator receiver domain LCQ53_04845 PF02811 PHP domain LCQ53_04850 PF01554 MatE LCQ53_04855 PF01810 LysE type translocator LCQ53_04875 PF08125 Mannitol dehydrogenase C-terminal domain LCQ53_04875 PF01232 Mannitol dehydrogenase Rossmann domain LCQ53_04880 PF01380 SIS domain LCQ53_04885 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LCQ53_04890 PF01232 Mannitol dehydrogenase Rossmann domain LCQ53_04890 PF08125 Mannitol dehydrogenase C-terminal domain LCQ53_04895 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_04900 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_04900 PF00874 PRD domain LCQ53_04900 PF05043 Mga helix-turn-helix domain LCQ53_04900 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_04900 PF08279 HTH domain LCQ53_04905 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_04905 PF02378 Phosphotransferase system, EIIC LCQ53_04910 PF00455 DeoR C terminal sensor domain LCQ53_04910 PF08220 DeoR-like helix-turn-helix domain LCQ53_04915 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_04915 PF00107 Zinc-binding dehydrogenase LCQ53_04925 PF01261 Xylose isomerase-like TIM barrel LCQ53_04935 PF01261 Xylose isomerase-like TIM barrel LCQ53_04940 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LCQ53_04940 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LCQ53_04945 PF00356 Bacterial regulatory proteins, lacI family LCQ53_04945 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LCQ53_04950 PF02378 Phosphotransferase system, EIIC LCQ53_04950 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_04950 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_04955 PF08220 DeoR-like helix-turn-helix domain LCQ53_04955 PF00455 DeoR C terminal sensor domain LCQ53_04960 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_04960 PF00107 Zinc-binding dehydrogenase LCQ53_04970 PF06418 CTP synthase N-terminus LCQ53_04970 PF00117 Glutamine amidotransferase class-I LCQ53_04980 PF02734 DAK2 domain LCQ53_04985 PF02733 Dak1 domain LCQ53_04990 PF01261 Xylose isomerase-like TIM barrel LCQ53_04995 PF02502 Ribose/Galactose Isomerase LCQ53_05000 PF13419 Haloacid dehalogenase-like hydrolase LCQ53_05015 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_05020 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_05020 PF02378 Phosphotransferase system, EIIC LCQ53_05020 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_05025 PF01116 Fructose-bisphosphate aldolase class-II LCQ53_05035 PF00877 NlpC/P60 family LCQ53_05040 PF02645 Uncharacterised protein, DegV family COG1307 LCQ53_05045 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LCQ53_05045 PF06827 Zinc finger found in FPG and IleRS LCQ53_05045 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LCQ53_05050 PF00239 Resolvase, N terminal domain LCQ53_05050 PF02796 Helix-turn-helix domain of resolvase LCQ53_05055 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_05055 PF08448 PAS fold LCQ53_05075 PF00005 ABC transporter LCQ53_05075 PF12857 TOBE-like domain LCQ53_05075 PF17850 CysA C-terminal regulatory domain LCQ53_05080 PF02525 Flavodoxin-like fold LCQ53_05085 PF00877 NlpC/P60 family LCQ53_05165 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LCQ53_05170 PF00814 Glycoprotease family LCQ53_05175 PF12706 Beta-lactamase superfamily domain LCQ53_05180 PF00583 Acetyltransferase (GNAT) family LCQ53_05185 PF00814 Glycoprotease family LCQ53_05190 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LCQ53_05200 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin LCQ53_05200 PF15714 Stage V sporulation protein T C-terminal, transcription factor LCQ53_05205 PF17755 UvrA DNA-binding domain LCQ53_05205 PF17760 UvrA interaction domain LCQ53_05210 PF00271 Helicase conserved C-terminal domain LCQ53_05210 PF04851 Type III restriction enzyme, res subunit LCQ53_05210 PF02151 UvrB/uvrC motif LCQ53_05210 PF12344 Ultra-violet resistance protein B LCQ53_05210 PF17757 UvrB interaction domain LCQ53_05215 PF00072 Response regulator receiver domain LCQ53_05215 PF01627 Hpt domain LCQ53_05215 PF00672 HAMP domain LCQ53_05215 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_05215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_05215 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LCQ53_05245 PF17820 PDZ domain LCQ53_05245 PF03572 Peptidase family S41 LCQ53_05245 PF01471 Putative peptidoglycan binding domain LCQ53_05260 PF01144 Coenzyme A transferase LCQ53_05265 PF01575 MaoC like domain LCQ53_05270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LCQ53_05270 PF03466 LysR substrate binding domain LCQ53_05275 PF04225 Opacity-associated protein A LysM-like domain LCQ53_05275 PF01551 Peptidase family M23 LCQ53_05280 PF02687 FtsX-like permease family LCQ53_05280 PF18075 FtsX extracellular domain LCQ53_05285 PF00005 ABC transporter LCQ53_05290 PF13556 PucR C-terminal helix-turn-helix domain LCQ53_05290 PF05651 Putative sugar diacid recognition LCQ53_05290 PF17853 GGDEF-like domain LCQ53_05295 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 LCQ53_05295 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) LCQ53_05310 PF16921 Tex protein YqgF-like domain LCQ53_05310 PF09371 Tex-like protein N-terminal domain LCQ53_05310 PF00575 S1 RNA binding domain LCQ53_05310 PF17674 HHH domain LCQ53_05315 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LCQ53_05320 PF13840 ACT domain LCQ53_05320 PF00696 Amino acid kinase family LCQ53_05325 PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase LCQ53_05325 PF01676 Metalloenzyme superfamily LCQ53_05330 PF01842 ACT domain LCQ53_05330 PF00742 Homoserine dehydrogenase LCQ53_05330 PF03447 Homoserine dehydrogenase, NAD binding domain LCQ53_05345 PF00472 RF-1 domain LCQ53_05345 PF03462 PCRF domain LCQ53_05350 PF02810 SEC-C motif LCQ53_05350 PF07516 SecA Wing and Scaffold domain LCQ53_05350 PF07517 SecA DEAD-like domain LCQ53_05350 PF01043 SecA preprotein cross-linking domain LCQ53_05355 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus LCQ53_05355 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LCQ53_05360 PF07992 Pyridine nucleotide-disulphide oxidoreductase LCQ53_05365 PF00085 Thioredoxin LCQ53_05370 PF00892 EamA-like transporter family LCQ53_05375 PF02311 AraC-like ligand binding domain LCQ53_05375 PF12833 Helix-turn-helix domain LCQ53_05380 PF01022 Bacterial regulatory protein, arsR family LCQ53_05390 PF00860 Permease family LCQ53_05395 PF12791 Anti-sigma factor N-terminus LCQ53_05395 PF00942 Cellulose binding domain LCQ53_05415 PF00005 ABC transporter LCQ53_05415 PF12848 ABC transporter LCQ53_05425 PF02308 MgtC family LCQ53_05430 PF00132 Bacterial transferase hexapeptide (six repeats) LCQ53_05430 PF12464 Maltose acetyltransferase LCQ53_05435 PF00488 MutS domain V LCQ53_05435 PF01713 Smr domain LCQ53_05445 PF00367 phosphotransferase system, EIIB LCQ53_05445 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LCQ53_05445 PF02378 Phosphotransferase system, EIIC LCQ53_05450 PF03123 CAT RNA binding domain LCQ53_05450 PF00874 PRD domain LCQ53_05455 PF02378 Phosphotransferase system, EIIC LCQ53_05455 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LCQ53_05455 PF00367 phosphotransferase system, EIIB LCQ53_05460 PF08279 HTH domain LCQ53_05460 PF13280 WYL domain LCQ53_05470 PF00380 Ribosomal protein S9/S16 LCQ53_05475 PF00572 Ribosomal protein L13 LCQ53_05480 PF03477 ATP cone domain LCQ53_05480 PF13597 Anaerobic ribonucleoside-triphosphate reductase LCQ53_05485 PF06463 Molybdenum Cofactor Synthesis C LCQ53_05485 PF04055 Radical SAM superfamily LCQ53_05490 PF01416 tRNA pseudouridine synthase LCQ53_05495 PF02361 Cobalt transport protein LCQ53_05500 PF00005 ABC transporter LCQ53_05505 PF00005 ABC transporter LCQ53_05515 PF01196 Ribosomal protein L17 LCQ53_05520 PF01000 RNA polymerase Rpb3/RpoA insert domain LCQ53_05520 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LCQ53_05520 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LCQ53_05525 PF01479 S4 domain LCQ53_05525 PF00163 Ribosomal protein S4/S9 N-terminal domain LCQ53_05530 PF00411 Ribosomal protein S11 LCQ53_05535 PF00416 Ribosomal protein S13/S18 LCQ53_05540 PF00444 Ribosomal protein L36 LCQ53_05545 PF01176 Translation initiation factor 1A / IF-1 LCQ53_05550 PF00557 Metallopeptidase family M24 LCQ53_05555 PF05191 Adenylate kinase, active site lid LCQ53_05560 PF00344 SecY translocase LCQ53_05565 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LCQ53_05570 PF00327 Ribosomal protein L30p/L7e LCQ53_05575 PF00333 Ribosomal protein S5, N-terminal domain LCQ53_05575 PF03719 Ribosomal protein S5, C-terminal domain LCQ53_05580 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LCQ53_05585 PF00347 Ribosomal protein L6 LCQ53_05590 PF00410 Ribosomal protein S8 LCQ53_05595 PF00253 Ribosomal protein S14p/S29e LCQ53_05600 PF00281 Ribosomal protein L5 LCQ53_05600 PF00673 ribosomal L5P family C-terminus LCQ53_05605 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LCQ53_05605 PF00467 KOW motif LCQ53_05610 PF00238 Ribosomal protein L14p/L23e LCQ53_05615 PF00366 Ribosomal protein S17 LCQ53_05620 PF00831 Ribosomal L29 protein LCQ53_05625 PF00252 Ribosomal protein L16p/L10e LCQ53_05630 PF00189 Ribosomal protein S3, C-terminal domain LCQ53_05630 PF07650 KH domain LCQ53_05635 PF00237 Ribosomal protein L22p/L17e LCQ53_05640 PF00203 Ribosomal protein S19 LCQ53_05645 PF00181 Ribosomal Proteins L2, RNA binding domain LCQ53_05645 PF03947 Ribosomal Proteins L2, C-terminal domain LCQ53_05650 PF00276 Ribosomal protein L23 LCQ53_05655 PF00573 Ribosomal protein L4/L1 family LCQ53_05660 PF00297 Ribosomal protein L3 LCQ53_05665 PF00338 Ribosomal protein S10p/S20e LCQ53_05680 PF00248 Aldo/keto reductase family LCQ53_05685 PF02734 DAK2 domain LCQ53_05690 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LCQ53_05695 PF02733 Dak1 domain LCQ53_05700 PF01380 SIS domain LCQ53_05705 PF08220 DeoR-like helix-turn-helix domain LCQ53_05705 PF00455 DeoR C terminal sensor domain LCQ53_05720 PF02785 Biotin carboxylase C-terminal domain LCQ53_05720 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LCQ53_05720 PF00289 Biotin carboxylase, N-terminal domain LCQ53_05725 PF07977 FabA-like domain LCQ53_05730 PF00364 Biotin-requiring enzyme LCQ53_05735 PF00109 Beta-ketoacyl synthase, N-terminal domain LCQ53_05735 PF02801 Beta-ketoacyl synthase, C-terminal domain LCQ53_05745 PF00698 Acyl transferase domain LCQ53_05750 PF00550 Phosphopantetheine attachment site LCQ53_05755 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_05755 PF00107 Zinc-binding dehydrogenase LCQ53_05760 PF00005 ABC transporter LCQ53_05780 PF02915 Rubrerythrin LCQ53_05800 PF00270 DEAD/DEAH box helicase LCQ53_05800 PF00271 Helicase conserved C-terminal domain LCQ53_05810 PF02001 Protein of unknown function DUF134 LCQ53_05815 PF03006 Haemolysin-III related LCQ53_05830 PF01541 GIY-YIG catalytic domain LCQ53_05840 PF08486 Stage II sporulation protein LCQ53_05860 PF08264 Anticodon-binding domain of tRNA LCQ53_05860 PF00133 tRNA synthetases class I (I, L, M and V) LCQ53_05870 PF00756 Putative esterase LCQ53_05875 PF03613 PTS system mannose/fructose/sorbose family IID component LCQ53_05880 PF03609 PTS system sorbose-specific iic component LCQ53_05885 PF03830 PTS system sorbose subfamily IIB component LCQ53_05885 PF03610 PTS system fructose IIA component LCQ53_05895 PF00874 PRD domain LCQ53_05895 PF00158 Sigma-54 interaction domain LCQ53_05900 PF03610 PTS system fructose IIA component LCQ53_05900 PF00874 PRD domain LCQ53_05900 PF00158 Sigma-54 interaction domain LCQ53_05910 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family LCQ53_05910 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain LCQ53_05910 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain LCQ53_05915 PF01553 Acyltransferase LCQ53_05925 PF00294 pfkB family carbohydrate kinase LCQ53_05940 PF00849 RNA pseudouridylate synthase LCQ53_05945 PF00072 Response regulator receiver domain LCQ53_05945 PF00486 Transcriptional regulatory protein, C terminal LCQ53_05950 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_05950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_05950 PF16736 Single Cache-like LCQ53_05950 PF00989 PAS fold LCQ53_05955 PF02441 Flavoprotein LCQ53_05955 PF04127 DNA / pantothenate metabolism flavoprotein LCQ53_05960 PF02261 Aspartate decarboxylase LCQ53_05965 PF02569 Pantoate-beta-alanine ligase LCQ53_05970 PF02548 Ketopantoate hydroxymethyltransferase LCQ53_05995 PF04055 Radical SAM superfamily LCQ53_06000 PF01228 Glycine radical LCQ53_06000 PF02901 Pyruvate formate lyase-like LCQ53_06005 PF00005 ABC transporter LCQ53_06005 PF12848 ABC transporter LCQ53_06010 PF08220 DeoR-like helix-turn-helix domain LCQ53_06010 PF00455 DeoR C terminal sensor domain LCQ53_06015 PF01418 Helix-turn-helix domain, rpiR family LCQ53_06015 PF01380 SIS domain LCQ53_06020 PF01418 Helix-turn-helix domain, rpiR family LCQ53_06020 PF01380 SIS domain LCQ53_06025 PF02378 Phosphotransferase system, EIIC LCQ53_06025 PF00367 phosphotransferase system, EIIB LCQ53_06025 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LCQ53_06030 PF02056 Family 4 glycosyl hydrolase LCQ53_06030 PF11975 Family 4 glycosyl hydrolase C-terminal domain LCQ53_06050 PF02378 Phosphotransferase system, EIIC LCQ53_06050 PF00367 phosphotransferase system, EIIB LCQ53_06055 PF00317 Ribonucleotide reductase, all-alpha domain LCQ53_06055 PF02867 Ribonucleotide reductase, barrel domain LCQ53_06055 PF03477 ATP cone domain LCQ53_06060 PF00268 Ribonucleotide reductase, small chain LCQ53_06065 PF06445 GyrI-like small molecule binding domain LCQ53_06065 PF12833 Helix-turn-helix domain LCQ53_06075 PF01522 Polysaccharide deacetylase LCQ53_06075 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain LCQ53_06080 PF13382 Adenine deaminase C-terminal domain LCQ53_06080 PF01979 Amidohydrolase family LCQ53_06085 PF02772 S-adenosylmethionine synthetase, central domain LCQ53_06085 PF00438 S-adenosylmethionine synthetase, N-terminal domain LCQ53_06085 PF02773 S-adenosylmethionine synthetase, C-terminal domain LCQ53_06095 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LCQ53_06100 PF01202 Shikimate kinase LCQ53_06110 PF01230 HIT domain LCQ53_06115 PF02132 RecR protein LCQ53_06115 PF13662 Toprim domain LCQ53_06120 PF02575 YbaB/EbfC DNA-binding family LCQ53_06125 PF12169 DNA polymerase III subunits gamma and tau domain III LCQ53_06130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_06130 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain LCQ53_06130 PF00989 PAS fold LCQ53_06130 PF17203 Single cache domain 3 LCQ53_06135 PF01694 Rhomboid family LCQ53_06175 PF00437 Type II/IV secretion system protein LCQ53_06190 PF00290 Tryptophan synthase alpha chain LCQ53_06195 PF03611 PTS system sugar-specific permease component LCQ53_06205 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_06215 PF06207 Protein of unknown function (DUF1002) LCQ53_06230 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LCQ53_06230 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LCQ53_06240 PF00005 ABC transporter LCQ53_06245 PF00528 Binding-protein-dependent transport system inner membrane component LCQ53_06250 PF00497 Bacterial extracellular solute-binding proteins, family 3 LCQ53_06255 PF03180 NLPA lipoprotein LCQ53_06260 PF00730 HhH-GPD superfamily base excision DNA repair protein LCQ53_06260 PF14815 NUDIX domain LCQ53_06280 PF01116 Fructose-bisphosphate aldolase class-II LCQ53_06295 PF07663 Sorbitol phosphotransferase enzyme II C-terminus LCQ53_06295 PF03612 Sorbitol phosphotransferase enzyme II N-terminus LCQ53_06300 PF03608 PTS system enzyme II sorbitol-specific factor LCQ53_06325 PF03612 Sorbitol phosphotransferase enzyme II N-terminus LCQ53_06325 PF07663 Sorbitol phosphotransferase enzyme II C-terminus LCQ53_06330 PF03608 PTS system enzyme II sorbitol-specific factor LCQ53_06340 PF04198 Putative sugar-binding domain LCQ53_06350 PF08279 HTH domain LCQ53_06350 PF13280 WYL domain LCQ53_06355 PF01965 DJ-1/PfpI family LCQ53_06360 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain LCQ53_06360 PF13538 UvrD-like helicase C-terminal domain LCQ53_06360 PF14490 Helix-hairpin-helix containing domain LCQ53_06370 PF10672 S-adenosylmethionine-dependent methyltransferase LCQ53_06370 PF02926 THUMP domain LCQ53_06370 PF01170 Putative RNA methylase family UPF0020 LCQ53_06375 PF00128 Alpha amylase, catalytic domain LCQ53_06375 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LCQ53_06380 PF11738 Protein of unknown function (DUF3298) LCQ53_06380 PF13739 Deacetylase PdaC LCQ53_06380 PF01522 Polysaccharide deacetylase LCQ53_06405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_06405 PF01627 Hpt domain LCQ53_06405 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_06405 PF00672 HAMP domain LCQ53_06405 PF00072 Response regulator receiver domain LCQ53_06405 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LCQ53_06410 PF00672 HAMP domain LCQ53_06410 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LCQ53_06410 PF00072 Response regulator receiver domain LCQ53_06410 PF01627 Hpt domain LCQ53_06410 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_06410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_06420 PF01966 HD domain LCQ53_06425 PF00072 Response regulator receiver domain LCQ53_06425 PF04397 LytTr DNA-binding domain LCQ53_06450 PF04011 LemA family LCQ53_06460 PF02915 Rubrerythrin LCQ53_06475 PF01595 Cyclin M transmembrane N-terminal domain LCQ53_06475 PF03471 Transporter associated domain LCQ53_06475 PF00571 CBS domain LCQ53_06490 PF03061 Thioesterase superfamily LCQ53_06500 PF02515 CoA-transferase family III LCQ53_06505 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LCQ53_06505 PF02770 Acyl-CoA dehydrogenase, middle domain LCQ53_06505 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LCQ53_06510 PF01012 Electron transfer flavoprotein domain LCQ53_06515 PF01012 Electron transfer flavoprotein domain LCQ53_06515 PF00766 Electron transfer flavoprotein FAD-binding domain LCQ53_06520 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LCQ53_06520 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LCQ53_06520 PF02770 Acyl-CoA dehydrogenase, middle domain LCQ53_06525 PF00583 Acetyltransferase (GNAT) family LCQ53_06530 PF06445 GyrI-like small molecule binding domain LCQ53_06530 PF13411 MerR HTH family regulatory protein LCQ53_06535 PF13411 MerR HTH family regulatory protein LCQ53_06540 PF01546 Peptidase family M20/M25/M40 LCQ53_06540 PF07687 Peptidase dimerisation domain LCQ53_06555 PF01979 Amidohydrolase family LCQ53_06560 PF01180 Dihydroorotate dehydrogenase LCQ53_06565 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LCQ53_06565 PF07992 Pyridine nucleotide-disulphide oxidoreductase LCQ53_06570 PF06496 Protein of unknown function (DUF1097) LCQ53_06585 PF08402 TOBE domain LCQ53_06585 PF00005 ABC transporter LCQ53_06610 PF00294 pfkB family carbohydrate kinase LCQ53_06615 PF01081 KDPG and KHG aldolase LCQ53_06620 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LCQ53_06620 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LCQ53_06635 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LCQ53_06645 PF03480 Bacterial extracellular solute-binding protein, family 7 LCQ53_06650 PF00392 Bacterial regulatory proteins, gntR family LCQ53_06650 PF07729 FCD domain LCQ53_06660 PF01554 MatE LCQ53_06665 PF13419 Haloacid dehalogenase-like hydrolase LCQ53_06670 PF03613 PTS system mannose/fructose/sorbose family IID component LCQ53_06675 PF03609 PTS system sorbose-specific iic component LCQ53_06680 PF03830 PTS system sorbose subfamily IIB component LCQ53_06695 PF01380 SIS domain LCQ53_06700 PF00392 Bacterial regulatory proteins, gntR family LCQ53_06700 PF07702 UTRA domain LCQ53_06720 PF03143 Elongation factor Tu C-terminal domain LCQ53_06720 PF03144 Elongation factor Tu domain 2 LCQ53_06720 PF00009 Elongation factor Tu GTP binding domain LCQ53_06725 PF00679 Elongation factor G C-terminus LCQ53_06725 PF14492 Elongation Factor G, domain II LCQ53_06725 PF03144 Elongation factor Tu domain 2 LCQ53_06725 PF00009 Elongation factor Tu GTP binding domain LCQ53_06725 PF03764 Elongation factor G, domain IV LCQ53_06730 PF00177 Ribosomal protein S7p/S5e LCQ53_06735 PF00164 Ribosomal protein S12/S23 LCQ53_06740 PF00623 RNA polymerase Rpb1, domain 2 LCQ53_06740 PF04983 RNA polymerase Rpb1, domain 3 LCQ53_06740 PF05000 RNA polymerase Rpb1, domain 4 LCQ53_06740 PF04998 RNA polymerase Rpb1, domain 5 LCQ53_06740 PF04997 RNA polymerase Rpb1, domain 1 LCQ53_06745 PF04561 RNA polymerase Rpb2, domain 2 LCQ53_06745 PF04563 RNA polymerase beta subunit LCQ53_06745 PF10385 RNA polymerase beta subunit external 1 domain LCQ53_06745 PF00562 RNA polymerase Rpb2, domain 6 LCQ53_06745 PF04560 RNA polymerase Rpb2, domain 7 LCQ53_06745 PF04565 RNA polymerase Rpb2, domain 3 LCQ53_06750 PF00542 Ribosomal protein L7/L12 C-terminal domain LCQ53_06750 PF16320 Ribosomal protein L7/L12 dimerisation domain LCQ53_06755 PF00466 Ribosomal protein L10 LCQ53_06765 PF00497 Bacterial extracellular solute-binding proteins, family 3 LCQ53_06770 PF00005 ABC transporter LCQ53_06775 PF00528 Binding-protein-dependent transport system inner membrane component LCQ53_06780 PF00528 Binding-protein-dependent transport system inner membrane component LCQ53_06785 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LCQ53_06790 PF17961 Bacterial Ig domain LCQ53_06790 PF00746 LPXTG cell wall anchor motif LCQ53_06790 PF17210 SdrD B-like domain LCQ53_06790 PF10425 C-terminus of bacterial fibrinogen-binding adhesin LCQ53_06790 PF04650 YSIRK type signal peptide LCQ53_06795 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase LCQ53_06800 PF04321 RmlD substrate binding domain LCQ53_06805 PF16363 GDP-mannose 4,6 dehydratase LCQ53_06810 PF00483 Nucleotidyl transferase LCQ53_06820 PF08241 Methyltransferase domain LCQ53_06830 PF00392 Bacterial regulatory proteins, gntR family LCQ53_06830 PF00155 Aminotransferase class I and II LCQ53_06910 PF00687 Ribosomal protein L1p/L10e family LCQ53_06915 PF00298 Ribosomal protein L11, RNA binding domain LCQ53_06915 PF03946 Ribosomal protein L11, N-terminal domain LCQ53_06920 PF02357 Transcription termination factor nusG LCQ53_06920 PF00467 KOW motif LCQ53_06930 PF00471 Ribosomal protein L33 LCQ53_06945 PF03477 ATP cone domain LCQ53_06960 PF03323 Bacillus/Clostridium GerA spore germination protein LCQ53_06965 PF00392 Bacterial regulatory proteins, gntR family LCQ53_06965 PF07729 FCD domain LCQ53_06970 PF00288 GHMP kinases N terminal domain LCQ53_06970 PF08544 GHMP kinases C terminal LCQ53_06975 PF00877 NlpC/P60 family LCQ53_06975 PF01476 LysM domain LCQ53_06975 PF08239 Bacterial SH3 domain LCQ53_06980 PF06257 Biofilm formation stimulator VEG LCQ53_06985 PF01434 Peptidase family M41 LCQ53_06985 PF06480 FtsH Extracellular LCQ53_06985 PF00004 ATPase family associated with various cellular activities (AAA) LCQ53_06985 PF17862 AAA+ lid domain LCQ53_06995 PF00591 Glycosyl transferase family, a/b domain LCQ53_06995 PF02885 Glycosyl transferase family, helical bundle domain LCQ53_06995 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain LCQ53_07000 PF02915 Rubrerythrin LCQ53_07020 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LCQ53_07020 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LCQ53_07020 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LCQ53_07020 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LCQ53_07030 PF00692 dUTPase LCQ53_07035 PF00342 Phosphoglucose isomerase LCQ53_07040 PF01522 Polysaccharide deacetylase LCQ53_07050 PF01048 Phosphorylase superfamily LCQ53_07060 PF04101 Glycosyltransferase family 28 C-terminal domain LCQ53_07060 PF03033 Glycosyltransferase family 28 N-terminal domain LCQ53_07070 PF01965 DJ-1/PfpI family LCQ53_07070 PF12833 Helix-turn-helix domain LCQ53_07080 PF01261 Xylose isomerase-like TIM barrel LCQ53_07085 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LCQ53_07085 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LCQ53_07090 PF01261 Xylose isomerase-like TIM barrel LCQ53_07095 PF13411 MerR HTH family regulatory protein LCQ53_07095 PF07739 TipAS antibiotic-recognition domain LCQ53_07100 PF02311 AraC-like ligand binding domain LCQ53_07100 PF12833 Helix-turn-helix domain LCQ53_07115 PF13344 Haloacid dehalogenase-like hydrolase LCQ53_07120 PF00596 Class II Aldolase and Adducin N-terminal domain LCQ53_07125 PF13685 Iron-containing alcohol dehydrogenase LCQ53_07130 PF03611 PTS system sugar-specific permease component LCQ53_07140 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_07140 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_07140 PF02378 Phosphotransferase system, EIIC LCQ53_07145 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_07145 PF08279 HTH domain LCQ53_07145 PF05043 Mga helix-turn-helix domain LCQ53_07145 PF00874 PRD domain LCQ53_07150 PF00294 pfkB family carbohydrate kinase LCQ53_07155 PF00455 DeoR C terminal sensor domain LCQ53_07155 PF08220 DeoR-like helix-turn-helix domain LCQ53_07165 PF00005 ABC transporter LCQ53_07180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_07185 PF00486 Transcriptional regulatory protein, C terminal LCQ53_07185 PF00072 Response regulator receiver domain LCQ53_07190 PF02403 Seryl-tRNA synthetase N-terminal domain LCQ53_07190 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LCQ53_07200 PF02195 ParB-like nuclease domain LCQ53_07200 PF17762 HTH domain found in ParB protein LCQ53_07205 PF13614 AAA domain LCQ53_07210 PF03485 Arginyl tRNA synthetase N terminal domain LCQ53_07210 PF05746 DALR anticodon binding domain LCQ53_07210 PF00750 tRNA synthetases class I (R) LCQ53_07225 PF02527 rRNA small subunit methyltransferase G LCQ53_07230 PF01134 Glucose inhibited division protein A LCQ53_07230 PF13932 GidA associated domain LCQ53_07235 PF12631 MnmE helical domain LCQ53_07235 PF10396 GTP-binding protein TrmE N-terminus LCQ53_07235 PF01926 50S ribosome-binding GTPase LCQ53_07240 PF01424 R3H domain LCQ53_07240 PF14804 Jag N-terminus LCQ53_07245 PF02096 60Kd inner membrane protein LCQ53_07250 PF01809 Putative membrane protein insertion efficiency factor LCQ53_07255 PF00825 Ribonuclease P LCQ53_07260 PF00468 Ribosomal protein L34 LCQ53_07265 PF11638 DnaA N-terminal domain LCQ53_07265 PF08299 Bacterial dnaA protein helix-turn-helix LCQ53_07265 PF00308 Bacterial dnaA protein LCQ53_07270 PF02767 DNA polymerase III beta subunit, central domain LCQ53_07270 PF00712 DNA polymerase III beta subunit, N-terminal domain LCQ53_07270 PF02768 DNA polymerase III beta subunit, C-terminal domain LCQ53_07280 PF02463 RecF/RecN/SMC N terminal domain LCQ53_07285 PF00986 DNA gyrase B subunit, carboxyl terminus LCQ53_07285 PF01751 Toprim domain LCQ53_07285 PF00204 DNA gyrase B LCQ53_07285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_07290 PF03989 DNA gyrase C-terminal domain, beta-propeller LCQ53_07290 PF00521 DNA gyrase/topoisomerase IV, subunit A LCQ53_07295 PF05681 Fumarate hydratase (Fumerase) LCQ53_07325 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LCQ53_07325 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LCQ53_07380 PF01554 MatE LCQ53_07385 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain LCQ53_07390 PF00923 Transaldolase/Fructose-6-phosphate aldolase LCQ53_07395 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_07400 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_07400 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_07400 PF00874 PRD domain LCQ53_07400 PF05043 Mga helix-turn-helix domain LCQ53_07400 PF08279 HTH domain LCQ53_07405 PF08125 Mannitol dehydrogenase C-terminal domain LCQ53_07405 PF01232 Mannitol dehydrogenase Rossmann domain LCQ53_07410 PF02378 Phosphotransferase system, EIIC LCQ53_07410 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_07415 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_07425 PF00356 Bacterial regulatory proteins, lacI family LCQ53_07430 PF01266 FAD dependent oxidoreductase LCQ53_07435 PF13192 Thioredoxin domain LCQ53_07435 PF07992 Pyridine nucleotide-disulphide oxidoreductase LCQ53_07445 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LCQ53_07445 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LCQ53_07455 PF04198 Putative sugar-binding domain LCQ53_07465 PF01336 OB-fold nucleic acid binding domain LCQ53_07465 PF00152 tRNA synthetases class II (D, K and N) LCQ53_07475 PF09424 Yqey-like protein LCQ53_07485 PF01645 Conserved region in glutamate synthase LCQ53_07490 PF01026 TatD related DNase LCQ53_07495 PF00398 Ribosomal RNA adenine dimethylase LCQ53_07505 PF14437 MafB19-like deaminase LCQ53_07510 PF01544 CorA-like Mg2+ transporter protein LCQ53_07535 PF03611 PTS system sugar-specific permease component LCQ53_07540 PF00596 Class II Aldolase and Adducin N-terminal domain LCQ53_07545 PF00107 Zinc-binding dehydrogenase LCQ53_07545 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_07560 PF04607 Region found in RelA / SpoT proteins LCQ53_07590 PF13514 AAA domain LCQ53_07595 PF00912 Transglycosylase LCQ53_07595 PF00905 Penicillin binding protein transpeptidase domain LCQ53_07600 PF14572 Phosphoribosyl synthetase-associated domain LCQ53_07600 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LCQ53_07615 PF08245 Mur ligase middle domain LCQ53_07615 PF01225 Mur ligase family, catalytic domain LCQ53_07615 PF02875 Mur ligase family, glutamate ligase domain LCQ53_07620 PF04026 SpoVG LCQ53_07665 PF06866 Protein of unknown function (DUF1256) LCQ53_07730 PF01276 Orn/Lys/Arg decarboxylase, major domain LCQ53_07730 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LCQ53_07735 PF02223 Thymidylate kinase LCQ53_07740 PF09115 DNA polymerase III, delta subunit, C terminal LCQ53_07745 PF04468 PSP1 C-terminal conserved region LCQ53_07750 PF05175 Methyltransferase small domain LCQ53_07755 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LCQ53_07760 PF18277 AbrB C-terminal domain LCQ53_07760 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin LCQ53_07780 PF01047 MarR family LCQ53_07785 PF01293 Phosphoenolpyruvate carboxykinase LCQ53_07795 PF01588 Putative tRNA binding domain LCQ53_07795 PF09334 tRNA synthetases class I (M) LCQ53_07805 PF03610 PTS system fructose IIA component LCQ53_07805 PF03830 PTS system sorbose subfamily IIB component LCQ53_07810 PF03830 PTS system sorbose subfamily IIB component LCQ53_07820 PF03613 PTS system mannose/fructose/sorbose family IID component LCQ53_07825 PF00107 Zinc-binding dehydrogenase LCQ53_07825 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_07840 PF01497 Periplasmic binding protein LCQ53_07845 PF01032 FecCD transport family LCQ53_07850 PF01032 FecCD transport family LCQ53_07855 PF00005 ABC transporter LCQ53_07885 PF07663 Sorbitol phosphotransferase enzyme II C-terminus LCQ53_07885 PF03612 Sorbitol phosphotransferase enzyme II N-terminus LCQ53_07890 PF03608 PTS system enzyme II sorbitol-specific factor LCQ53_07900 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_07900 PF00107 Zinc-binding dehydrogenase LCQ53_07905 PF00325 Bacterial regulatory proteins, crp family LCQ53_07905 PF04198 Putative sugar-binding domain LCQ53_07915 PF02441 Flavoprotein LCQ53_07920 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase LCQ53_07925 PF03466 LysR substrate binding domain LCQ53_07925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LCQ53_07935 PF01713 Smr domain LCQ53_07935 PF00488 MutS domain V LCQ53_07940 PF01966 HD domain LCQ53_07945 PF05958 tRNA (Uracil-5-)-methyltransferase LCQ53_07945 PF01938 TRAM domain LCQ53_07990 PF01872 RibD C-terminal domain LCQ53_07995 PF01209 ubiE/COQ5 methyltransferase family LCQ53_08010 PF00730 HhH-GPD superfamily base excision DNA repair protein LCQ53_08010 PF00633 Helix-hairpin-helix motif LCQ53_08015 PF17158 Membrane-associated sensor, integral membrane domain LCQ53_08015 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_08040 PF00239 Resolvase, N terminal domain LCQ53_08040 PF02796 Helix-turn-helix domain of resolvase LCQ53_08055 PF04237 YjbR LCQ53_08065 PF00293 NUDIX domain LCQ53_08070 PF00578 AhpC/TSA family LCQ53_08075 PF02683 Cytochrome C biogenesis protein transmembrane region LCQ53_08080 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LCQ53_08080 PF07992 Pyridine nucleotide-disulphide oxidoreductase LCQ53_08100 PF00465 Iron-containing alcohol dehydrogenase LCQ53_08110 PF00465 Iron-containing alcohol dehydrogenase LCQ53_08120 PF03883 Peroxide stress protein YaaA LCQ53_08145 PF00156 Phosphoribosyl transferase domain LCQ53_08150 PF00117 Glutamine amidotransferase class-I LCQ53_08150 PF00958 GMP synthase C terminal domain LCQ53_08165 PF00589 Phage integrase family LCQ53_08165 PF02899 Phage integrase, N-terminal SAM-like domain LCQ53_08175 PF18073 Rubredoxin metal binding domain LCQ53_08190 PF01076 Plasmid recombination enzyme LCQ53_08210 PF00145 C-5 cytosine-specific DNA methylase LCQ53_08215 PF03852 DNA mismatch endonuclease Vsr LCQ53_08220 PF06470 SMC proteins Flexible Hinge Domain LCQ53_08220 PF02463 RecF/RecN/SMC N terminal domain LCQ53_08230 PF00005 ABC transporter LCQ53_08230 PF09383 NIL domain LCQ53_08235 PF00271 Helicase conserved C-terminal domain LCQ53_08235 PF00176 SNF2 family N-terminal domain LCQ53_08235 PF04434 SWIM zinc finger LCQ53_08245 PF00156 Phosphoribosyl transferase domain LCQ53_08255 PF00528 Binding-protein-dependent transport system inner membrane component LCQ53_08260 PF09084 NMT1/THI5 like LCQ53_08265 PF00005 ABC transporter LCQ53_08270 PF00381 PTS HPr component phosphorylation site LCQ53_08280 PF00391 PEP-utilising enzyme, mobile domain LCQ53_08280 PF02896 PEP-utilising enzyme, TIM barrel domain LCQ53_08280 PF05524 PEP-utilising enzyme, N-terminal LCQ53_08300 PF03611 PTS system sugar-specific permease component LCQ53_08305 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LCQ53_08305 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LCQ53_08305 PF01842 ACT domain LCQ53_08310 PF00596 Class II Aldolase and Adducin N-terminal domain LCQ53_08315 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_08315 PF00107 Zinc-binding dehydrogenase LCQ53_08320 PF00465 Iron-containing alcohol dehydrogenase LCQ53_08325 PF01554 MatE LCQ53_08340 PF01116 Fructose-bisphosphate aldolase class-II LCQ53_08345 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_08345 PF00107 Zinc-binding dehydrogenase LCQ53_08350 PF03613 PTS system mannose/fructose/sorbose family IID component LCQ53_08360 PF03830 PTS system sorbose subfamily IIB component LCQ53_08370 PF00392 Bacterial regulatory proteins, gntR family LCQ53_08370 PF07702 UTRA domain LCQ53_08385 PF04199 Putative cyclase LCQ53_08390 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LCQ53_08390 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LCQ53_08400 PF00230 Major intrinsic protein LCQ53_08405 PF07729 FCD domain LCQ53_08405 PF00392 Bacterial regulatory proteins, gntR family LCQ53_08420 PF01739 CheR methyltransferase, SAM binding domain LCQ53_08420 PF03705 CheR methyltransferase, all-alpha domain LCQ53_08425 PF00679 Elongation factor G C-terminus LCQ53_08425 PF14492 Elongation Factor G, domain II LCQ53_08425 PF03764 Elongation factor G, domain IV LCQ53_08425 PF00009 Elongation factor Tu GTP binding domain LCQ53_08440 PF06463 Molybdenum Cofactor Synthesis C LCQ53_08440 PF04055 Radical SAM superfamily LCQ53_08445 PF18665 Tetracyclin repressor-like, C-terminal domain LCQ53_08445 PF00440 Bacterial regulatory proteins, tetR family LCQ53_08470 PF00270 DEAD/DEAH box helicase LCQ53_08470 PF16124 RecQ zinc-binding LCQ53_08470 PF00271 Helicase conserved C-terminal domain LCQ53_08470 PF09382 RQC domain LCQ53_08470 PF00570 HRDC domain LCQ53_08475 PF01327 Polypeptide deformylase LCQ53_08480 PF13472 GDSL-like Lipase/Acylhydrolase family LCQ53_08485 PF07729 FCD domain LCQ53_08485 PF00392 Bacterial regulatory proteins, gntR family LCQ53_08490 PF00920 Dehydratase family LCQ53_08495 PF00107 Zinc-binding dehydrogenase LCQ53_08495 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_08500 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_08500 PF00107 Zinc-binding dehydrogenase LCQ53_08505 PF00155 Aminotransferase class I and II LCQ53_08510 PF13520 Amino acid permease LCQ53_08525 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LCQ53_08525 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LCQ53_08530 PF01081 KDPG and KHG aldolase LCQ53_08535 PF00294 pfkB family carbohydrate kinase LCQ53_08540 PF00664 ABC transporter transmembrane region LCQ53_08540 PF00005 ABC transporter LCQ53_08545 PF01381 Helix-turn-helix LCQ53_08555 PF01554 MatE LCQ53_08575 PF13188 PAS domain LCQ53_08575 PF00563 EAL domain LCQ53_08575 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_08575 PF03707 Bacterial signalling protein N terminal repeat LCQ53_08590 PF01554 MatE LCQ53_08595 PF18152 DAHP synthase ferredoxin-like domain LCQ53_08595 PF00793 DAHP synthetase I family LCQ53_08600 PF01195 Peptidyl-tRNA hydrolase LCQ53_08605 PF03461 TRCF domain LCQ53_08605 PF17757 UvrB interaction domain LCQ53_08605 PF02559 CarD-like/TRCF domain LCQ53_08605 PF00271 Helicase conserved C-terminal domain LCQ53_08605 PF00270 DEAD/DEAH box helicase LCQ53_08620 PF01250 Ribosomal protein S6 LCQ53_08625 PF00436 Single-strand binding protein family LCQ53_08630 PF01084 Ribosomal protein S18 LCQ53_08635 PF01368 DHH family LCQ53_08635 PF02272 DHHA1 domain LCQ53_08640 PF03948 Ribosomal protein L9, C-terminal domain LCQ53_08640 PF01281 Ribosomal protein L9, N-terminal domain LCQ53_08645 PF03796 DnaB-like helicase C terminal domain LCQ53_08645 PF00772 DnaB-like helicase N terminal domain LCQ53_08655 PF12838 4Fe-4S dicluster domain LCQ53_08670 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_08675 PF03611 PTS system sugar-specific permease component LCQ53_08680 PF02733 Dak1 domain LCQ53_08690 PF00596 Class II Aldolase and Adducin N-terminal domain LCQ53_08695 PF02733 Dak1 domain LCQ53_08715 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LCQ53_08715 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LCQ53_08730 PF01520 N-acetylmuramoyl-L-alanine amidase LCQ53_08735 PF01235 Sodium:alanine symporter family LCQ53_08740 PF03481 Putative GTP-binding controlling metal-binding LCQ53_08740 PF01300 Telomere recombination LCQ53_08745 PF02502 Ribose/Galactose Isomerase LCQ53_08760 PF00119 ATP synthase A chain LCQ53_08765 PF00137 ATP synthase subunit C LCQ53_08770 PF00430 ATP synthase B/B' CF(0) LCQ53_08775 PF00213 ATP synthase delta (OSCP) subunit LCQ53_08780 PF02874 ATP synthase alpha/beta family, beta-barrel domain LCQ53_08780 PF00306 ATP synthase alpha/beta chain, C terminal domain LCQ53_08780 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LCQ53_08785 PF00231 ATP synthase LCQ53_08790 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LCQ53_08790 PF02874 ATP synthase alpha/beta family, beta-barrel domain LCQ53_08795 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain LCQ53_08795 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LCQ53_08805 PF00563 EAL domain LCQ53_08805 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_08805 PF13426 PAS domain LCQ53_08810 PF01928 CYTH domain LCQ53_08815 PF02390 Putative methyltransferase LCQ53_08820 PF00085 Thioredoxin LCQ53_08825 PF00005 ABC transporter LCQ53_08825 PF16326 ABC transporter C-terminal domain LCQ53_08825 PF12848 ABC transporter LCQ53_08835 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LCQ53_08835 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LCQ53_08840 PF06580 Histidine kinase LCQ53_08840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_08840 PF00672 HAMP domain LCQ53_08840 PF02743 Cache domain LCQ53_08845 PF00072 Response regulator receiver domain LCQ53_08845 PF12833 Helix-turn-helix domain LCQ53_08850 PF01261 Xylose isomerase-like TIM barrel LCQ53_08875 PF01594 AI-2E family transporter LCQ53_08880 PF00795 Carbon-nitrogen hydrolase LCQ53_08885 PF04397 LytTr DNA-binding domain LCQ53_08885 PF00072 Response regulator receiver domain LCQ53_08890 PF00005 ABC transporter LCQ53_08900 PF01894 Uncharacterised protein family UPF0047 LCQ53_08905 PF08191 LRR adjacent LCQ53_08905 PF12799 Leucine Rich repeats (2 copies) LCQ53_08905 PF12354 Bacterial adhesion/invasion protein N terminal LCQ53_08905 PF00746 LPXTG cell wall anchor motif LCQ53_08905 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) LCQ53_08910 PF04203 Sortase domain LCQ53_08930 PF17783 CvfB-like winged helix domain LCQ53_08930 PF13509 S1 domain LCQ53_08935 PF03819 MazG nucleotide pyrophosphohydrolase domain LCQ53_08935 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LCQ53_08940 PF00216 Bacterial DNA-binding protein LCQ53_08945 PF01479 S4 domain LCQ53_08950 PF07873 YabP family LCQ53_08965 PF05043 Mga helix-turn-helix domain LCQ53_08965 PF08279 HTH domain LCQ53_08965 PF00874 PRD domain LCQ53_08965 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_08970 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_08980 PF03611 PTS system sugar-specific permease component LCQ53_08990 PF01116 Fructose-bisphosphate aldolase class-II LCQ53_08995 PF01791 DeoC/LacD family aldolase LCQ53_09000 PF00294 pfkB family carbohydrate kinase LCQ53_09030 PF07992 Pyridine nucleotide-disulphide oxidoreductase LCQ53_09030 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LCQ53_09035 PF00027 Cyclic nucleotide-binding domain LCQ53_09035 PF00325 Bacterial regulatory proteins, crp family LCQ53_09045 PF01171 PP-loop family LCQ53_09045 PF11734 TilS substrate C-terminal domain LCQ53_09050 PF00156 Phosphoribosyl transferase domain LCQ53_09055 PF01434 Peptidase family M41 LCQ53_09055 PF17862 AAA+ lid domain LCQ53_09055 PF00004 ATPase family associated with various cellular activities (AAA) LCQ53_09060 PF00375 Sodium:dicarboxylate symporter family LCQ53_09075 PF01554 MatE LCQ53_09095 PF00313 'Cold-shock' DNA-binding domain LCQ53_09105 PF00437 Type II/IV secretion system protein LCQ53_09190 PF00390 Malic enzyme, N-terminal domain LCQ53_09190 PF03949 Malic enzyme, NAD binding domain LCQ53_09200 PF01554 MatE LCQ53_09215 PF00440 Bacterial regulatory proteins, tetR family LCQ53_09215 PF18665 Tetracyclin repressor-like, C-terminal domain LCQ53_09220 PF02446 4-alpha-glucanotransferase LCQ53_09225 PF00633 Helix-hairpin-helix motif LCQ53_09225 PF00730 HhH-GPD superfamily base excision DNA repair protein LCQ53_09230 PF11490 DNA polymerase III polC-type N-terminus II LCQ53_09230 PF07733 Bacterial DNA polymerase III alpha NTPase domain LCQ53_09230 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LCQ53_09230 PF14579 Helix-hairpin-helix motif LCQ53_09230 PF02811 PHP domain LCQ53_09230 PF00929 Exonuclease LCQ53_09235 PF04294 VanW like protein LCQ53_09240 PF02769 AIR synthase related protein, C-terminal domain LCQ53_09240 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LCQ53_09240 PF00586 AIR synthase related protein, N-terminal domain LCQ53_09245 PF01037 Lrp/AsnC ligand binding domain LCQ53_09250 PF00155 Aminotransferase class I and II LCQ53_09255 PF00588 SpoU rRNA Methylase family LCQ53_09275 PF03129 Anticodon binding domain LCQ53_09275 PF09180 Prolyl-tRNA synthetase, C-terminal LCQ53_09275 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LCQ53_09280 PF01743 Poly A polymerase head domain LCQ53_09280 PF12627 Probable RNA and SrmB- binding site of polymerase A LCQ53_09280 PF13735 tRNA nucleotidyltransferase domain 2 putative LCQ53_09290 PF01820 D-ala D-ala ligase N-terminus LCQ53_09290 PF07478 D-ala D-ala ligase C-terminus LCQ53_09295 PF01177 Asp/Glu/Hydantoin racemase LCQ53_09305 PF01569 PAP2 superfamily LCQ53_09325 PF00563 EAL domain LCQ53_09325 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_09325 PF03707 Bacterial signalling protein N terminal repeat LCQ53_09330 PF01053 Cys/Met metabolism PLP-dependent enzyme LCQ53_09335 PF02219 Methylenetetrahydrofolate reductase LCQ53_09345 PF02574 Homocysteine S-methyltransferase LCQ53_09345 PF02965 Vitamin B12 dependent methionine synthase, activation domain LCQ53_09345 PF00809 Pterin binding enzyme LCQ53_09345 PF02310 B12 binding domain LCQ53_09345 PF02607 B12 binding domain LCQ53_09350 PF03591 AzlC protein LCQ53_09355 PF05437 Branched-chain amino acid transport protein (AzlD) LCQ53_09360 PF01116 Fructose-bisphosphate aldolase class-II LCQ53_09365 PF02920 DNA binding domain of tn916 integrase LCQ53_09365 PF00589 Phage integrase family LCQ53_09370 PF09035 Excisionase from transposon Tn916 LCQ53_09405 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_09415 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LCQ53_09415 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LCQ53_09445 PF01791 DeoC/LacD family aldolase LCQ53_09460 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_09465 PF03611 PTS system sugar-specific permease component LCQ53_09470 PF03613 PTS system mannose/fructose/sorbose family IID component LCQ53_09480 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_09480 PF00107 Zinc-binding dehydrogenase LCQ53_09485 PF00834 Ribulose-phosphate 3 epimerase family LCQ53_09490 PF01380 SIS domain LCQ53_09495 PF03830 PTS system sorbose subfamily IIB component LCQ53_09500 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_09500 PF00107 Zinc-binding dehydrogenase LCQ53_09505 PF02698 DUF218 domain LCQ53_09510 PF01842 ACT domain LCQ53_09510 PF03315 Serine dehydratase beta chain LCQ53_09515 PF03313 Serine dehydratase alpha chain LCQ53_09520 PF01116 Fructose-bisphosphate aldolase class-II LCQ53_09525 PF01418 Helix-turn-helix domain, rpiR family LCQ53_09525 PF01380 SIS domain LCQ53_09530 PF00294 pfkB family carbohydrate kinase LCQ53_09535 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_09535 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_09540 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_09540 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_09545 PF08220 DeoR-like helix-turn-helix domain LCQ53_09545 PF00455 DeoR C terminal sensor domain LCQ53_09555 PF00107 Zinc-binding dehydrogenase LCQ53_09555 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_09565 PF00149 Calcineurin-like phosphoesterase LCQ53_09570 PF01638 HxlR-like helix-turn-helix LCQ53_09580 PF01661 Macro domain LCQ53_09605 PF00892 EamA-like transporter family LCQ53_09610 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LCQ53_09610 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LCQ53_09615 PF00731 AIR carboxylase LCQ53_09620 PF01969 Protein of unknown function DUF111 LCQ53_09625 PF02540 NAD synthase LCQ53_09630 PF01891 Cobalt uptake substrate-specific transmembrane region LCQ53_09630 PF13190 PDGLE domain LCQ53_09640 PF00005 ABC transporter LCQ53_09645 PF13411 MerR HTH family regulatory protein LCQ53_09650 PF00563 EAL domain LCQ53_09650 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_09650 PF03707 Bacterial signalling protein N terminal repeat LCQ53_09655 PF02938 GAD domain LCQ53_09655 PF00152 tRNA synthetases class II (D, K and N) LCQ53_09655 PF01336 OB-fold nucleic acid binding domain LCQ53_09670 PF02779 Transketolase, pyrimidine binding domain LCQ53_09670 PF02780 Transketolase, C-terminal domain LCQ53_09670 PF00456 Transketolase, thiamine diphosphate binding domain LCQ53_09675 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LCQ53_09675 PF02780 Transketolase, C-terminal domain LCQ53_09675 PF02779 Transketolase, pyrimidine binding domain LCQ53_09680 PF00107 Zinc-binding dehydrogenase LCQ53_09680 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_09685 PF03610 PTS system fructose IIA component LCQ53_09685 PF00874 PRD domain LCQ53_09685 PF00158 Sigma-54 interaction domain LCQ53_09700 PF12833 Helix-turn-helix domain LCQ53_09720 PF01144 Coenzyme A transferase LCQ53_09725 PF01144 Coenzyme A transferase LCQ53_09730 PF00378 Enoyl-CoA hydratase/isomerase LCQ53_09755 PF00465 Iron-containing alcohol dehydrogenase LCQ53_09760 PF03830 PTS system sorbose subfamily IIB component LCQ53_09765 PF03609 PTS system sorbose-specific iic component LCQ53_09770 PF03613 PTS system mannose/fructose/sorbose family IID component LCQ53_09775 PF01116 Fructose-bisphosphate aldolase class-II LCQ53_09780 PF00107 Zinc-binding dehydrogenase LCQ53_09780 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_09785 PF04198 Putative sugar-binding domain LCQ53_09785 PF13936 Helix-turn-helix domain LCQ53_09820 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system LCQ53_09825 PF00654 Voltage gated chloride channel LCQ53_09830 PF03167 Uracil DNA glycosylase superfamily LCQ53_09845 PF07943 Penicillin-binding protein 5, C-terminal domain LCQ53_09845 PF00768 D-alanyl-D-alanine carboxypeptidase LCQ53_09860 PF00781 Diacylglycerol kinase catalytic domain LCQ53_09870 PF00360 Phytochrome region LCQ53_09870 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_09870 PF01590 GAF domain LCQ53_09870 PF00563 EAL domain LCQ53_09880 PF04963 Sigma-54 factor, core binding domain LCQ53_09880 PF04552 Sigma-54, DNA binding domain LCQ53_09880 PF00309 Sigma-54 factor, Activator interacting domain (AID) LCQ53_09885 PF03610 PTS system fructose IIA component LCQ53_09890 PF00874 PRD domain LCQ53_09890 PF00158 Sigma-54 interaction domain LCQ53_09890 PF03610 PTS system fructose IIA component LCQ53_09895 PF01116 Fructose-bisphosphate aldolase class-II LCQ53_09905 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_09905 PF00107 Zinc-binding dehydrogenase LCQ53_09910 PF03830 PTS system sorbose subfamily IIB component LCQ53_09915 PF03609 PTS system sorbose-specific iic component LCQ53_09925 PF01232 Mannitol dehydrogenase Rossmann domain LCQ53_09925 PF08125 Mannitol dehydrogenase C-terminal domain LCQ53_09930 PF00248 Aldo/keto reductase family LCQ53_09950 PF01228 Glycine radical LCQ53_09950 PF02901 Pyruvate formate lyase-like LCQ53_09955 PF04055 Radical SAM superfamily LCQ53_09955 PF13187 4Fe-4S dicluster domain LCQ53_09960 PF00923 Transaldolase/Fructose-6-phosphate aldolase LCQ53_09965 PF03610 PTS system fructose IIA component LCQ53_09965 PF03830 PTS system sorbose subfamily IIB component LCQ53_09970 PF03830 PTS system sorbose subfamily IIB component LCQ53_09975 PF03613 PTS system mannose/fructose/sorbose family IID component LCQ53_09980 PF04198 Putative sugar-binding domain LCQ53_09985 PF07859 alpha/beta hydrolase fold LCQ53_09990 PF02885 Glycosyl transferase family, helical bundle domain LCQ53_09990 PF00117 Glutamine amidotransferase class-I LCQ53_09990 PF00591 Glycosyl transferase family, a/b domain LCQ53_09995 PF04715 Anthranilate synthase component I, N terminal region LCQ53_09995 PF00425 chorismate binding enzyme LCQ53_10000 PF01063 Amino-transferase class IV LCQ53_10005 PF00309 Sigma-54 factor, Activator interacting domain (AID) LCQ53_10005 PF04963 Sigma-54 factor, core binding domain LCQ53_10005 PF04552 Sigma-54, DNA binding domain LCQ53_10010 PF13538 UvrD-like helicase C-terminal domain LCQ53_10015 PF12833 Helix-turn-helix domain LCQ53_10030 PF01235 Sodium:alanine symporter family LCQ53_10055 PF00909 Ammonium Transporter Family LCQ53_10060 PF00543 Nitrogen regulatory protein P-II LCQ53_10065 PF00892 EamA-like transporter family LCQ53_10075 PF02368 Bacterial Ig-like domain (group 2) LCQ53_10080 PF02082 Transcriptional regulator LCQ53_10105 PF01170 Putative RNA methylase family UPF0020 LCQ53_10105 PF02926 THUMP domain LCQ53_10110 PF01725 Ham1 family LCQ53_10120 PF05958 tRNA (Uracil-5-)-methyltransferase LCQ53_10140 PF10706 Aminoglycoside-2''-adenylyltransferase LCQ53_10145 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LCQ53_10150 PF12697 Alpha/beta hydrolase family LCQ53_10165 PF00270 DEAD/DEAH box helicase LCQ53_10165 PF03880 DbpA RNA binding domain LCQ53_10165 PF00271 Helicase conserved C-terminal domain LCQ53_10175 PF03466 LysR substrate binding domain LCQ53_10175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LCQ53_10180 PF00860 Permease family LCQ53_10185 PF01979 Amidohydrolase family LCQ53_10185 PF13382 Adenine deaminase C-terminal domain LCQ53_10190 PF02595 Glycerate kinase family LCQ53_10195 PF08003 Protein of unknown function (DUF1698) LCQ53_10205 PF01627 Hpt domain LCQ53_10205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_10205 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_10205 PF00072 Response regulator receiver domain LCQ53_10210 PF08543 Phosphomethylpyrimidine kinase LCQ53_10225 PF00528 Binding-protein-dependent transport system inner membrane component LCQ53_10230 PF00571 CBS domain LCQ53_10230 PF00005 ABC transporter LCQ53_10260 PF00465 Iron-containing alcohol dehydrogenase LCQ53_10270 PF07702 UTRA domain LCQ53_10270 PF00392 Bacterial regulatory proteins, gntR family LCQ53_10275 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LCQ53_10285 PF03608 PTS system enzyme II sorbitol-specific factor LCQ53_10290 PF03612 Sorbitol phosphotransferase enzyme II N-terminus LCQ53_10290 PF07663 Sorbitol phosphotransferase enzyme II C-terminus LCQ53_10295 PF03612 Sorbitol phosphotransferase enzyme II N-terminus LCQ53_10295 PF07663 Sorbitol phosphotransferase enzyme II C-terminus LCQ53_10305 PF00392 Bacterial regulatory proteins, gntR family LCQ53_10305 PF07702 UTRA domain LCQ53_10325 PF02673 Bacitracin resistance protein BacA LCQ53_10345 PF07992 Pyridine nucleotide-disulphide oxidoreductase LCQ53_10345 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LCQ53_10350 PF01979 Amidohydrolase family LCQ53_10350 PF13382 Adenine deaminase C-terminal domain LCQ53_10355 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_10355 PF00107 Zinc-binding dehydrogenase LCQ53_10355 PF13823 Alcohol dehydrogenase GroES-associated LCQ53_10370 PF12706 Beta-lactamase superfamily domain LCQ53_10380 PF01545 Cation efflux family LCQ53_10380 PF16916 Dimerisation domain of Zinc Transporter LCQ53_10385 PF00005 ABC transporter LCQ53_10385 PF00664 ABC transporter transmembrane region LCQ53_10390 PF00664 ABC transporter transmembrane region LCQ53_10390 PF00005 ABC transporter LCQ53_10410 PF00072 Response regulator receiver domain LCQ53_10415 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LCQ53_10415 PF01871 AMMECR1 LCQ53_10420 PF04055 Radical SAM superfamily LCQ53_10435 PF13426 PAS domain LCQ53_10435 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_10435 PF00563 EAL domain LCQ53_10440 PF00905 Penicillin binding protein transpeptidase domain LCQ53_10440 PF03717 Penicillin-binding Protein dimerisation domain LCQ53_10440 PF05223 NTF2-like N-terminal transpeptidase domain LCQ53_10445 PF05569 BlaR1 peptidase M56 LCQ53_10445 PF00905 Penicillin binding protein transpeptidase domain LCQ53_10450 PF03965 Penicillinase repressor LCQ53_10460 PF00285 Citrate synthase, C-terminal domain LCQ53_10475 PF02595 Glycerate kinase family LCQ53_10480 PF00561 alpha/beta hydrolase fold LCQ53_10485 PF01842 ACT domain LCQ53_10485 PF03447 Homoserine dehydrogenase, NAD binding domain LCQ53_10485 PF00742 Homoserine dehydrogenase LCQ53_10490 PF00892 EamA-like transporter family LCQ53_10495 PF03814 Potassium-transporting ATPase A subunit LCQ53_10505 PF02669 K+-transporting ATPase, c chain LCQ53_10510 PF13493 Domain of unknown function (DUF4118) LCQ53_10510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_10510 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_10510 PF02702 Osmosensitive K+ channel His kinase sensor domain LCQ53_10515 PF00072 Response regulator receiver domain LCQ53_10515 PF00486 Transcriptional regulatory protein, C terminal LCQ53_10520 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_10520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_10520 PF13493 Domain of unknown function (DUF4118) LCQ53_10520 PF02702 Osmosensitive K+ channel His kinase sensor domain LCQ53_10525 PF00486 Transcriptional regulatory protein, C terminal LCQ53_10525 PF00072 Response regulator receiver domain LCQ53_10535 PF01022 Bacterial regulatory protein, arsR family LCQ53_10550 PF00248 Aldo/keto reductase family LCQ53_10560 PF00258 Flavodoxin LCQ53_10570 PF00005 ABC transporter LCQ53_10580 PF00486 Transcriptional regulatory protein, C terminal LCQ53_10580 PF00072 Response regulator receiver domain LCQ53_10585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_10590 PF00183 Hsp90 protein LCQ53_10595 PF01266 FAD dependent oxidoreductase LCQ53_10595 PF00355 Rieske [2Fe-2S] domain LCQ53_10610 PF03190 Protein of unknown function, DUF255 LCQ53_10620 PF00072 Response regulator receiver domain LCQ53_10620 PF00486 Transcriptional regulatory protein, C terminal LCQ53_10625 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_10625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_10630 PF01915 Glycosyl hydrolase family 3 C-terminal domain LCQ53_10630 PF00933 Glycosyl hydrolase family 3 N terminal domain LCQ53_10635 PF01259 SAICAR synthetase LCQ53_10640 PF00156 Phosphoribosyl transferase domain LCQ53_10645 PF00206 Lyase LCQ53_10645 PF10397 Adenylosuccinate lyase C-terminus LCQ53_10650 PF00781 Diacylglycerol kinase catalytic domain LCQ53_10655 PF07969 Amidohydrolase family LCQ53_10660 PF00356 Bacterial regulatory proteins, lacI family LCQ53_10665 PF00923 Transaldolase/Fructose-6-phosphate aldolase LCQ53_10670 PF00456 Transketolase, thiamine diphosphate binding domain LCQ53_10675 PF02779 Transketolase, pyrimidine binding domain LCQ53_10675 PF02780 Transketolase, C-terminal domain LCQ53_10680 PF00294 pfkB family carbohydrate kinase LCQ53_10690 PF01380 SIS domain LCQ53_10695 PF00884 Sulfatase LCQ53_10700 PF05697 Bacterial trigger factor protein (TF) LCQ53_10700 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LCQ53_10700 PF05698 Bacterial trigger factor protein (TF) C-terminus LCQ53_10705 PF00574 Clp protease LCQ53_10710 PF07724 AAA domain (Cdc48 subfamily) LCQ53_10710 PF10431 C-terminal, D2-small domain, of ClpB protein LCQ53_10710 PF06689 ClpX C4-type zinc finger LCQ53_10715 PF00004 ATPase family associated with various cellular activities (AAA) LCQ53_10715 PF05362 Lon protease (S16) C-terminal proteolytic domain LCQ53_10715 PF02190 ATP-dependent protease La (LON) substrate-binding domain LCQ53_10720 PF02875 Mur ligase family, glutamate ligase domain LCQ53_10720 PF08245 Mur ligase middle domain LCQ53_10730 PF00809 Pterin binding enzyme LCQ53_10735 PF02152 Dihydroneopterin aldolase LCQ53_10735 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LCQ53_10740 PF00800 Prephenate dehydratase LCQ53_10740 PF01817 Chorismate mutase type II LCQ53_10740 PF01842 ACT domain LCQ53_10745 PF00884 Sulfatase LCQ53_10750 PF00709 Adenylosuccinate synthetase LCQ53_10755 PF10502 Signal peptidase, peptidase S26 LCQ53_10765 PF01042 Endoribonuclease L-PSP LCQ53_10770 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_10775 PF01554 MatE LCQ53_10780 PF00128 Alpha amylase, catalytic domain LCQ53_10785 PF08279 HTH domain LCQ53_10785 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_10785 PF00874 PRD domain LCQ53_10785 PF05043 Mga helix-turn-helix domain LCQ53_10790 PF03611 PTS system sugar-specific permease component LCQ53_10800 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_10805 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_10805 PF00107 Zinc-binding dehydrogenase LCQ53_10810 PF00834 Ribulose-phosphate 3 epimerase family LCQ53_10815 PF00107 Zinc-binding dehydrogenase LCQ53_10815 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_10820 PF01380 SIS domain LCQ53_10825 PF01261 Xylose isomerase-like TIM barrel LCQ53_10830 PF00294 pfkB family carbohydrate kinase LCQ53_10835 PF01116 Fructose-bisphosphate aldolase class-II LCQ53_10850 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LCQ53_10850 PF01872 RibD C-terminal domain LCQ53_10855 PF00677 Lumazine binding domain LCQ53_10860 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LCQ53_10860 PF00925 GTP cyclohydrolase II LCQ53_10865 PF00885 6,7-dimethyl-8-ribityllumazine synthase LCQ53_10870 PF02146 Sir2 family LCQ53_10885 PF02424 ApbE family LCQ53_10890 PF00356 Bacterial regulatory proteins, lacI family LCQ53_10900 PF00288 GHMP kinases N terminal domain LCQ53_10900 PF08544 GHMP kinases C terminal LCQ53_10900 PF10509 Galactokinase galactose-binding signature LCQ53_10905 PF01263 Aldose 1-epimerase LCQ53_10910 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain LCQ53_10910 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain LCQ53_10915 PF16363 GDP-mannose 4,6 dehydratase LCQ53_10920 PF00072 Response regulator receiver domain LCQ53_10920 PF00486 Transcriptional regulatory protein, C terminal LCQ53_10930 PF06397 Desulfoferrodoxin, N-terminal domain LCQ53_10930 PF01880 Desulfoferrodoxin LCQ53_10940 PF02441 Flavoprotein LCQ53_10945 PF13537 Glutamine amidotransferase domain LCQ53_10945 PF00733 Asparagine synthase LCQ53_10990 PF13280 WYL domain LCQ53_10990 PF08279 HTH domain LCQ53_11000 PF03180 NLPA lipoprotein LCQ53_11005 PF09383 NIL domain LCQ53_11005 PF00005 ABC transporter LCQ53_11010 PF00528 Binding-protein-dependent transport system inner membrane component LCQ53_11015 PF01565 FAD binding domain LCQ53_11015 PF02913 FAD linked oxidases, C-terminal domain LCQ53_11025 PF01784 NIF3 (NGG1p interacting factor 3) LCQ53_11040 PF01381 Helix-turn-helix LCQ53_11060 PF00004 ATPase family associated with various cellular activities (AAA) LCQ53_11060 PF17862 AAA+ lid domain LCQ53_11060 PF01434 Peptidase family M41 LCQ53_11070 PF01661 Macro domain LCQ53_11080 PF00301 Rubredoxin LCQ53_11085 PF04073 Aminoacyl-tRNA editing domain LCQ53_11090 PF00484 Carbonic anhydrase LCQ53_11095 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LCQ53_11130 PF01381 Helix-turn-helix LCQ53_11320 PF09393 Phage tail tube protein LCQ53_11350 PF10934 Protein of unknown function (DUF2634) LCQ53_11355 PF04865 Baseplate J-like protein LCQ53_11385 PF01510 N-acetylmuramoyl-L-alanine amidase LCQ53_11385 PF01471 Putative peptidoglycan binding domain LCQ53_11425 PF00005 ABC transporter LCQ53_11435 PF00128 Alpha amylase, catalytic domain LCQ53_11435 PF02903 Alpha amylase, N-terminal ig-like domain LCQ53_11435 PF16657 Maltogenic Amylase, C-terminal domain LCQ53_11440 PF01966 HD domain LCQ53_11440 PF00013 KH domain LCQ53_11440 PF12072 Domain of unknown function (DUF3552) LCQ53_11445 PF00106 short chain dehydrogenase LCQ53_11450 PF02378 Phosphotransferase system, EIIC LCQ53_11450 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_11450 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_11455 PF08220 DeoR-like helix-turn-helix domain LCQ53_11455 PF00455 DeoR C terminal sensor domain LCQ53_11460 PF08125 Mannitol dehydrogenase C-terminal domain LCQ53_11460 PF01232 Mannitol dehydrogenase Rossmann domain LCQ53_11465 PF00293 NUDIX domain LCQ53_11475 PF00793 DAHP synthetase I family LCQ53_11480 PF12822 ECF transporter, substrate-specific component LCQ53_11490 PF00300 Histidine phosphatase superfamily (branch 1) LCQ53_11500 PF01546 Peptidase family M20/M25/M40 LCQ53_11500 PF07687 Peptidase dimerisation domain LCQ53_11505 PF14821 Threonine synthase N terminus LCQ53_11505 PF00291 Pyridoxal-phosphate dependent enzyme LCQ53_11510 PF08281 Sigma-70, region 4 LCQ53_11510 PF04542 Sigma-70 region 2 LCQ53_11530 PF00005 ABC transporter LCQ53_11535 PF00392 Bacterial regulatory proteins, gntR family LCQ53_11545 PF00069 Protein kinase domain LCQ53_11545 PF03793 PASTA domain LCQ53_11555 PF00575 S1 RNA binding domain LCQ53_11560 PF01264 Chorismate synthase LCQ53_11565 PF01702 Queuine tRNA-ribosyltransferase LCQ53_11570 PF02699 Preprotein translocase subunit LCQ53_11575 PF01717 Cobalamin-independent synthase, Catalytic domain LCQ53_11585 PF02811 PHP domain LCQ53_11595 PF04055 Radical SAM superfamily LCQ53_11600 PF02355 Protein export membrane protein LCQ53_11600 PF07549 SecD/SecF GG Motif LCQ53_11605 PF02272 DHHA1 domain LCQ53_11605 PF10141 Single-strand DNA-specific exonuclease, C terminal domain LCQ53_11605 PF17768 RecJ OB domain LCQ53_11605 PF01368 DHH family LCQ53_11615 PF00149 Calcineurin-like phosphoesterase LCQ53_11615 PF12320 Type 5 capsule protein repressor C-terminal domain LCQ53_11620 PF13476 AAA domain LCQ53_11640 PF02542 YgbB family LCQ53_11660 PF00849 RNA pseudouridylate synthase LCQ53_11660 PF01479 S4 domain LCQ53_11665 PF01653 NAD-dependent DNA ligase adenylation domain LCQ53_11665 PF03120 NAD-dependent DNA ligase OB-fold domain LCQ53_11665 PF12826 Helix-hairpin-helix motif LCQ53_11665 PF00533 BRCA1 C Terminus (BRCT) domain LCQ53_11675 PF04204 Homoserine O-succinyltransferase LCQ53_11680 PF01842 ACT domain LCQ53_11680 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LCQ53_11680 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LCQ53_11685 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_11685 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_11685 PF02378 Phosphotransferase system, EIIC LCQ53_11690 PF01116 Fructose-bisphosphate aldolase class-II LCQ53_11695 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_11695 PF02378 Phosphotransferase system, EIIC LCQ53_11700 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_11720 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_11720 PF02378 Phosphotransferase system, EIIC LCQ53_11725 PF00107 Zinc-binding dehydrogenase LCQ53_11725 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_11730 PF01116 Fructose-bisphosphate aldolase class-II LCQ53_11735 PF00874 PRD domain LCQ53_11735 PF05043 Mga helix-turn-helix domain LCQ53_11735 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_11735 PF08279 HTH domain LCQ53_11740 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_11750 PF13419 Haloacid dehalogenase-like hydrolase LCQ53_11755 PF13419 Haloacid dehalogenase-like hydrolase LCQ53_11760 PF03772 Competence protein LCQ53_11760 PF13567 Domain of unknown function (DUF4131) LCQ53_11760 PF00753 Metallo-beta-lactamase superfamily LCQ53_11765 PF13416 Bacterial extracellular solute-binding protein LCQ53_11770 PF00543 Nitrogen regulatory protein P-II LCQ53_11775 PF08402 TOBE domain LCQ53_11775 PF00005 ABC transporter LCQ53_11780 PF00528 Binding-protein-dependent transport system inner membrane component LCQ53_11785 PF00528 Binding-protein-dependent transport system inner membrane component LCQ53_11795 PF07664 Ferrous iron transport protein B C terminus LCQ53_11795 PF07670 Nucleoside recognition LCQ53_11795 PF02421 Ferrous iron transport protein B LCQ53_11795 PF17910 FeoB cytosolic helical domain LCQ53_11800 PF12146 Serine aminopeptidase, S33 LCQ53_11810 PF11799 impB/mucB/samB family C-terminal domain LCQ53_11810 PF00817 impB/mucB/samB family LCQ53_11830 PF02896 PEP-utilising enzyme, TIM barrel domain LCQ53_11830 PF00391 PEP-utilising enzyme, mobile domain LCQ53_11830 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LCQ53_11845 PF03952 Enolase, N-terminal domain LCQ53_11845 PF00113 Enolase, C-terminal TIM barrel domain LCQ53_11850 PF00578 AhpC/TSA family LCQ53_11850 PF10417 C-terminal domain of 1-Cys peroxiredoxin LCQ53_11855 PF07992 Pyridine nucleotide-disulphide oxidoreductase LCQ53_11860 PF17152 Periplasmic sensor domain LCQ53_11860 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_11865 PF01325 Iron dependent repressor, N-terminal DNA binding domain LCQ53_11865 PF02742 Iron dependent repressor, metal binding and dimerisation domain LCQ53_11880 PF17910 FeoB cytosolic helical domain LCQ53_11880 PF04023 FeoA domain LCQ53_11880 PF07670 Nucleoside recognition LCQ53_11880 PF07664 Ferrous iron transport protein B C terminus LCQ53_11880 PF02421 Ferrous iron transport protein B LCQ53_11920 PF00258 Flavodoxin LCQ53_11920 PF00753 Metallo-beta-lactamase superfamily LCQ53_11925 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LCQ53_11925 PF02770 Acyl-CoA dehydrogenase, middle domain LCQ53_11925 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LCQ53_11935 PF01799 [2Fe-2S] binding domain LCQ53_11935 PF00111 2Fe-2S iron-sulfur cluster binding domain LCQ53_11940 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase LCQ53_11940 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain LCQ53_11940 PF01799 [2Fe-2S] binding domain LCQ53_11945 PF01791 DeoC/LacD family aldolase LCQ53_11950 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LCQ53_11950 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LCQ53_11955 PF08220 DeoR-like helix-turn-helix domain LCQ53_11955 PF00455 DeoR C terminal sensor domain LCQ53_11960 PF00294 pfkB family carbohydrate kinase LCQ53_11960 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LCQ53_11965 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LCQ53_11970 PF02256 Iron hydrogenase small subunit LCQ53_11970 PF12838 4Fe-4S dicluster domain LCQ53_11970 PF02906 Iron only hydrogenase large subunit, C-terminal domain LCQ53_11985 PF01758 Sodium Bile acid symporter family LCQ53_11990 PF08281 Sigma-70, region 4 LCQ53_11990 PF04542 Sigma-70 region 2 LCQ53_12010 PF00356 Bacterial regulatory proteins, lacI family LCQ53_12010 PF13407 Periplasmic binding protein domain LCQ53_12025 PF00367 phosphotransferase system, EIIB LCQ53_12025 PF02378 Phosphotransferase system, EIIC LCQ53_12025 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LCQ53_12030 PF08244 Glycosyl hydrolases family 32 C terminal LCQ53_12030 PF00251 Glycosyl hydrolases family 32 N-terminal domain LCQ53_12035 PF00294 pfkB family carbohydrate kinase LCQ53_12040 PF03551 Transcriptional regulator PadR-like family LCQ53_12060 PF14542 GCN5-related N-acetyl-transferase LCQ53_12065 PF13936 Helix-turn-helix domain LCQ53_12065 PF04198 Putative sugar-binding domain LCQ53_12070 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_12075 PF00248 Aldo/keto reductase family LCQ53_12080 PF03611 PTS system sugar-specific permease component LCQ53_12085 PF01791 DeoC/LacD family aldolase LCQ53_12095 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_12100 PF13685 Iron-containing alcohol dehydrogenase LCQ53_12110 PF02796 Helix-turn-helix domain of resolvase LCQ53_12110 PF00239 Resolvase, N terminal domain LCQ53_12120 PF01894 Uncharacterised protein family UPF0047 LCQ53_12125 PF00899 ThiF family LCQ53_12130 PF03601 Conserved hypothetical protein 698 LCQ53_12140 PF03466 LysR substrate binding domain LCQ53_12140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LCQ53_12145 PF02770 Acyl-CoA dehydrogenase, middle domain LCQ53_12145 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LCQ53_12145 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LCQ53_12150 PF01012 Electron transfer flavoprotein domain LCQ53_12155 PF01012 Electron transfer flavoprotein domain LCQ53_12155 PF00766 Electron transfer flavoprotein FAD-binding domain LCQ53_12165 PF01116 Fructose-bisphosphate aldolase class-II LCQ53_12170 PF00356 Bacterial regulatory proteins, lacI family LCQ53_12175 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LCQ53_12175 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LCQ53_12180 PF01261 Xylose isomerase-like TIM barrel LCQ53_12190 PF01261 Xylose isomerase-like TIM barrel LCQ53_12195 PF01261 Xylose isomerase-like TIM barrel LCQ53_12205 PF01381 Helix-turn-helix LCQ53_12215 PF01261 Xylose isomerase-like TIM barrel LCQ53_12220 PF12706 Beta-lactamase superfamily domain LCQ53_12230 PF00586 AIR synthase related protein, N-terminal domain LCQ53_12230 PF02769 AIR synthase related protein, C-terminal domain LCQ53_12240 PF00266 Aminotransferase class-V LCQ53_12245 PF00149 Calcineurin-like phosphoesterase LCQ53_12255 PF01235 Sodium:alanine symporter family LCQ53_12265 PF01680 SOR/SNZ family LCQ53_12270 PF01174 SNO glutamine amidotransferase family LCQ53_12275 PF02545 Maf-like protein LCQ53_12285 PF03707 Bacterial signalling protein N terminal repeat LCQ53_12285 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_12285 PF00563 EAL domain LCQ53_12290 PF06949 Protein of unknown function (DUF1292) LCQ53_12295 PF00999 Sodium/hydrogen exchanger family LCQ53_12305 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family LCQ53_12310 PF00586 AIR synthase related protein, N-terminal domain LCQ53_12310 PF02769 AIR synthase related protein, C-terminal domain LCQ53_12310 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LCQ53_12315 PF00923 Transaldolase/Fructose-6-phosphate aldolase LCQ53_12325 PF01554 MatE LCQ53_12345 PF08220 DeoR-like helix-turn-helix domain LCQ53_12345 PF00455 DeoR C terminal sensor domain LCQ53_12350 PF00356 Bacterial regulatory proteins, lacI family LCQ53_12355 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LCQ53_12355 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LCQ53_12360 PF01261 Xylose isomerase-like TIM barrel LCQ53_12365 PF01261 Xylose isomerase-like TIM barrel LCQ53_12390 PF00583 Acetyltransferase (GNAT) family LCQ53_12395 PF01613 Flavin reductase like domain LCQ53_12395 PF00301 Rubredoxin LCQ53_12400 PF00356 Bacterial regulatory proteins, lacI family LCQ53_12405 PF00294 pfkB family carbohydrate kinase LCQ53_12410 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LCQ53_12410 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LCQ53_12410 PF00205 Thiamine pyrophosphate enzyme, central domain LCQ53_12420 PF00465 Iron-containing alcohol dehydrogenase LCQ53_12425 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) LCQ53_12425 PF00746 LPXTG cell wall anchor motif LCQ53_12425 PF12354 Bacterial adhesion/invasion protein N terminal LCQ53_12425 PF12799 Leucine Rich repeats (2 copies) LCQ53_12425 PF08191 LRR adjacent LCQ53_12430 PF14552 Tautomerase enzyme LCQ53_12435 PF01012 Electron transfer flavoprotein domain LCQ53_12440 PF00766 Electron transfer flavoprotein FAD-binding domain LCQ53_12440 PF01012 Electron transfer flavoprotein domain LCQ53_12450 PF01144 Coenzyme A transferase LCQ53_12455 PF00378 Enoyl-CoA hydratase/isomerase LCQ53_12460 PF02770 Acyl-CoA dehydrogenase, middle domain LCQ53_12460 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LCQ53_12460 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LCQ53_12465 PF01047 MarR family LCQ53_12475 PF02127 Aminopeptidase I zinc metalloprotease (M18) LCQ53_12485 PF03063 Prismane/CO dehydrogenase family LCQ53_12490 PF08402 TOBE domain LCQ53_12490 PF00005 ABC transporter LCQ53_12505 PF00266 Aminotransferase class-V LCQ53_12510 PF13419 Haloacid dehalogenase-like hydrolase LCQ53_12510 PF00266 Aminotransferase class-V LCQ53_12515 PF02535 ZIP Zinc transporter LCQ53_12520 PF02824 TGS domain LCQ53_12520 PF13291 ACT domain LCQ53_12520 PF04607 Region found in RelA / SpoT proteins LCQ53_12525 PF02153 Prephenate dehydrogenase LCQ53_12525 PF01842 ACT domain LCQ53_12530 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LCQ53_12535 PF02638 Glycosyl hydrolase-like 10 LCQ53_12540 PF00574 Clp protease LCQ53_12545 PF12833 Helix-turn-helix domain LCQ53_12555 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_12560 PF03611 PTS system sugar-specific permease component LCQ53_12565 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_12565 PF00107 Zinc-binding dehydrogenase LCQ53_12570 PF00596 Class II Aldolase and Adducin N-terminal domain LCQ53_12580 PF00465 Iron-containing alcohol dehydrogenase LCQ53_12585 PF00107 Zinc-binding dehydrogenase LCQ53_12585 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_12590 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_12615 PF00474 Sodium:solute symporter family LCQ53_12620 PF00210 Ferritin-like domain LCQ53_12630 PF12652 CotJB protein LCQ53_12635 PF05067 Manganese containing catalase LCQ53_12640 PF02742 Iron dependent repressor, metal binding and dimerisation domain LCQ53_12640 PF01325 Iron dependent repressor, N-terminal DNA binding domain LCQ53_12650 PF02421 Ferrous iron transport protein B LCQ53_12650 PF17910 FeoB cytosolic helical domain LCQ53_12650 PF07664 Ferrous iron transport protein B C terminus LCQ53_12650 PF07670 Nucleoside recognition LCQ53_12655 PF12849 PBP superfamily domain LCQ53_12660 PF02080 TrkA-C domain LCQ53_12660 PF02254 TrkA-N domain LCQ53_12665 PF02386 Cation transport protein LCQ53_12675 PF00694 Aconitase C-terminal domain LCQ53_12680 PF00330 Aconitase family (aconitate hydratase) LCQ53_12685 PF00694 Aconitase C-terminal domain LCQ53_12690 PF00330 Aconitase family (aconitate hydratase) LCQ53_12695 PF02417 Chromate transporter LCQ53_12705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LCQ53_12705 PF03466 LysR substrate binding domain LCQ53_12710 PF01545 Cation efflux family LCQ53_12710 PF16916 Dimerisation domain of Zinc Transporter LCQ53_12745 PF01520 N-acetylmuramoyl-L-alanine amidase LCQ53_12745 PF08239 Bacterial SH3 domain LCQ53_12750 PF00561 alpha/beta hydrolase fold LCQ53_12750 PF08386 TAP-like protein LCQ53_12755 PF00571 CBS domain LCQ53_12755 PF01769 Divalent cation transporter LCQ53_12755 PF03448 MgtE intracellular N domain LCQ53_12760 PF01522 Polysaccharide deacetylase LCQ53_12770 PF18318 Glutamine synthetase C-terminal domain LCQ53_12770 PF00120 Glutamine synthetase, catalytic domain LCQ53_12770 PF12437 Glutamine synthetase type III N terminal LCQ53_12775 PF03422 Carbohydrate binding module (family 6) LCQ53_12775 PF00457 Glycosyl hydrolases family 11 LCQ53_12775 PF01522 Polysaccharide deacetylase LCQ53_12780 PF02659 Putative manganese efflux pump LCQ53_12785 PF01699 Sodium/calcium exchanger protein LCQ53_12790 PF01926 50S ribosome-binding GTPase LCQ53_12810 PF13782 Stage V sporulation protein AB LCQ53_12815 PF03862 SpoVAC/SpoVAEB sporulation membrane protein LCQ53_12820 PF07451 Stage V sporulation protein AD (SpoVAD) LCQ53_12825 PF03862 SpoVAC/SpoVAEB sporulation membrane protein LCQ53_12830 PF00912 Transglycosylase LCQ53_12830 PF00905 Penicillin binding protein transpeptidase domain LCQ53_12840 PF01205 Uncharacterized protein family UPF0029 LCQ53_12840 PF09186 Domain of unknown function (DUF1949) LCQ53_12845 PF08502 LeuA allosteric (dimerisation) domain LCQ53_12845 PF00682 HMGL-like LCQ53_12865 PF04560 RNA polymerase Rpb2, domain 7 LCQ53_12865 PF10385 RNA polymerase beta subunit external 1 domain LCQ53_12865 PF04565 RNA polymerase Rpb2, domain 3 LCQ53_12865 PF00562 RNA polymerase Rpb2, domain 6 LCQ53_12865 PF04561 RNA polymerase Rpb2, domain 2 LCQ53_12865 PF04563 RNA polymerase beta subunit LCQ53_12880 PF12705 PD-(D/E)XK nuclease superfamily LCQ53_12885 PF13361 UvrD-like helicase C-terminal domain LCQ53_12885 PF12705 PD-(D/E)XK nuclease superfamily LCQ53_12885 PF00580 UvrD/REP helicase N-terminal domain LCQ53_12900 PF01979 Amidohydrolase family LCQ53_12910 PF00899 ThiF family LCQ53_12915 PF05690 Thiazole biosynthesis protein ThiG LCQ53_12920 PF04055 Radical SAM superfamily LCQ53_12920 PF06968 Biotin and Thiamin Synthesis associated domain LCQ53_12925 PF02581 Thiamine monophosphate synthase LCQ53_12930 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LCQ53_12935 PF13091 PLD-like domain LCQ53_12940 PF13847 Methyltransferase domain LCQ53_12945 PF01430 Hsp33 protein LCQ53_12965 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LCQ53_12980 PF12833 Helix-turn-helix domain LCQ53_12985 PF04545 Sigma-70, region 4 LCQ53_12985 PF04539 Sigma-70 region 3 LCQ53_12985 PF04542 Sigma-70 region 2 LCQ53_13000 PF00557 Metallopeptidase family M24 LCQ53_13000 PF01321 Creatinase/Prolidase N-terminal domain LCQ53_13005 PF00365 Phosphofructokinase LCQ53_13010 PF03631 Virulence factor BrkB LCQ53_13015 PF00874 PRD domain LCQ53_13015 PF03123 CAT RNA binding domain LCQ53_13020 PF03830 PTS system sorbose subfamily IIB component LCQ53_13020 PF03610 PTS system fructose IIA component LCQ53_13025 PF03609 PTS system sorbose-specific iic component LCQ53_13030 PF03613 PTS system mannose/fructose/sorbose family IID component LCQ53_13040 PF01238 Phosphomannose isomerase type I LCQ53_13045 PF02378 Phosphotransferase system, EIIC LCQ53_13045 PF00367 phosphotransferase system, EIIB LCQ53_13045 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LCQ53_13050 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LCQ53_13050 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LCQ53_13055 PF01081 KDPG and KHG aldolase LCQ53_13060 PF04794 YdjC-like protein LCQ53_13065 PF03613 PTS system mannose/fructose/sorbose family IID component LCQ53_13070 PF03609 PTS system sorbose-specific iic component LCQ53_13075 PF03830 PTS system sorbose subfamily IIB component LCQ53_13080 PF03610 PTS system fructose IIA component LCQ53_13090 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LCQ53_13090 PF01409 tRNA synthetases class II core domain (F) LCQ53_13095 PF03483 B3/4 domain LCQ53_13095 PF03484 tRNA synthetase B5 domain LCQ53_13095 PF03147 Ferredoxin-fold anticodon binding domain LCQ53_13095 PF01588 Putative tRNA binding domain LCQ53_13095 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LCQ53_13110 PF02547 Queuosine biosynthesis protein LCQ53_13120 PF09962 Uncharacterized conserved protein (DUF2196) LCQ53_13125 PF12833 Helix-turn-helix domain LCQ53_13145 PF01554 MatE LCQ53_13155 PF02224 Cytidylate kinase LCQ53_13160 PF02401 LytB protein LCQ53_13160 PF00575 S1 RNA binding domain LCQ53_13165 PF00682 HMGL-like LCQ53_13165 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LCQ53_13165 PF02785 Biotin carboxylase C-terminal domain LCQ53_13165 PF00364 Biotin-requiring enzyme LCQ53_13165 PF02436 Conserved carboxylase domain LCQ53_13165 PF00289 Biotin carboxylase, N-terminal domain LCQ53_13170 PF00574 Clp protease LCQ53_13180 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LCQ53_13180 PF09397 Ftsk gamma domain LCQ53_13180 PF17854 FtsK alpha domain LCQ53_13180 PF01580 FtsK/SpoIIIE family LCQ53_13185 PF01268 Formate--tetrahydrofolate ligase LCQ53_13190 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LCQ53_13190 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LCQ53_13195 PF00919 Uncharacterized protein family UPF0004 LCQ53_13195 PF18693 TRAM domain LCQ53_13195 PF04055 Radical SAM superfamily LCQ53_13200 PF01066 CDP-alcohol phosphatidyltransferase LCQ53_13205 PF02464 Competence-damaged protein LCQ53_13205 PF18146 Damage-inducible protein CinA KH domain LCQ53_13205 PF00994 Probable molybdopterin binding domain LCQ53_13210 PF00154 recA bacterial DNA recombination protein LCQ53_13215 PF02631 RecX family LCQ53_13230 PF00005 ABC transporter LCQ53_13230 PF12848 ABC transporter LCQ53_13235 PF04297 Putative helix-turn-helix protein, YlxM / p13 like LCQ53_13240 PF02978 Signal peptide binding domain LCQ53_13240 PF02881 SRP54-type protein, helical bundle domain LCQ53_13240 PF00448 SRP54-type protein, GTPase domain LCQ53_13245 PF00886 Ribosomal protein S16 LCQ53_13255 PF03372 Endonuclease/Exonuclease/phosphatase family LCQ53_13270 PF03600 Citrate transporter LCQ53_13280 PF02664 S-Ribosylhomocysteinase (LuxS) LCQ53_13325 PF03610 PTS system fructose IIA component LCQ53_13325 PF03830 PTS system sorbose subfamily IIB component LCQ53_13330 PF01116 Fructose-bisphosphate aldolase class-II LCQ53_13340 PF03830 PTS system sorbose subfamily IIB component LCQ53_13350 PF03613 PTS system mannose/fructose/sorbose family IID component LCQ53_13355 PF00107 Zinc-binding dehydrogenase LCQ53_13355 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_13360 PF00392 Bacterial regulatory proteins, gntR family LCQ53_13360 PF07702 UTRA domain LCQ53_13365 PF03123 CAT RNA binding domain LCQ53_13365 PF00874 PRD domain LCQ53_13370 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LCQ53_13370 PF00367 phosphotransferase system, EIIB LCQ53_13370 PF02378 Phosphotransferase system, EIIC LCQ53_13375 PF00367 phosphotransferase system, EIIB LCQ53_13375 PF02378 Phosphotransferase system, EIIC LCQ53_13380 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LCQ53_13385 PF01979 Amidohydrolase family LCQ53_13405 PF02690 Na+/Pi-cotransporter LCQ53_13410 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LCQ53_13410 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LCQ53_13415 PF00162 Phosphoglycerate kinase LCQ53_13420 PF00121 Triosephosphate isomerase LCQ53_13435 PF01676 Metalloenzyme superfamily LCQ53_13435 PF06415 BPG-independent PGAM N-terminus (iPGM_N) LCQ53_13440 PF00113 Enolase, C-terminal TIM barrel domain LCQ53_13440 PF03952 Enolase, N-terminal domain LCQ53_13455 PF17876 Cold shock domain LCQ53_13455 PF08206 Ribonuclease B OB domain LCQ53_13455 PF00773 RNB domain LCQ53_13455 PF00575 S1 RNA binding domain LCQ53_13460 PF01668 SmpB protein LCQ53_13465 PF01183 Glycosyl hydrolases family 25 LCQ53_13470 PF00072 Response regulator receiver domain LCQ53_13470 PF00486 Transcriptional regulatory protein, C terminal LCQ53_13500 PF12791 Anti-sigma factor N-terminus LCQ53_13505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_13505 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_13520 PF00005 ABC transporter LCQ53_13525 PF00072 Response regulator receiver domain LCQ53_13525 PF00486 Transcriptional regulatory protein, C terminal LCQ53_13535 PF01782 RimM N-terminal domain LCQ53_13535 PF05239 PRC-barrel domain LCQ53_13540 PF01746 tRNA (Guanine-1)-methyltransferase LCQ53_13545 PF01245 Ribosomal protein L19 LCQ53_13550 PF10502 Signal peptidase, peptidase S26 LCQ53_13555 PF01926 50S ribosome-binding GTPase LCQ53_13560 PF10502 Signal peptidase, peptidase S26 LCQ53_13565 PF01351 Ribonuclease HII LCQ53_13570 PF02021 Uncharacterised protein family UPF0102 LCQ53_13575 PF02578 Multi-copper polyphenol oxidoreductase laccase LCQ53_13580 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LCQ53_13580 PF01926 50S ribosome-binding GTPase LCQ53_13585 PF02660 Glycerol-3-phosphate acyltransferase LCQ53_13590 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LCQ53_13590 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LCQ53_13595 PF12897 Alanine-glyoxylate amino-transferase LCQ53_13600 PF01554 MatE LCQ53_13605 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LCQ53_13605 PF00367 phosphotransferase system, EIIB LCQ53_13605 PF02378 Phosphotransferase system, EIIC LCQ53_13615 PF16874 Glycosyl hydrolase family 36 C-terminal domain LCQ53_13615 PF16875 Glycosyl hydrolase family 36 N-terminal domain LCQ53_13620 PF02311 AraC-like ligand binding domain LCQ53_13620 PF12833 Helix-turn-helix domain LCQ53_13625 PF01678 Diaminopimelate epimerase LCQ53_13630 PF01225 Mur ligase family, catalytic domain LCQ53_13630 PF02875 Mur ligase family, glutamate ligase domain LCQ53_13630 PF08245 Mur ligase middle domain LCQ53_13635 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LCQ53_13635 PF08501 Shikimate dehydrogenase substrate binding domain LCQ53_13640 PF09547 Stage IV sporulation protein A (spore_IV_A) LCQ53_13645 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LCQ53_13645 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LCQ53_13650 PF04607 Region found in RelA / SpoT proteins LCQ53_13655 PF01189 16S rRNA methyltransferase RsmB/F LCQ53_13655 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF LCQ53_13655 PF17126 RsmF rRNA methyltransferase first C-terminal domain LCQ53_13660 PF00849 RNA pseudouridylate synthase LCQ53_13660 PF01479 S4 domain LCQ53_13665 PF13419 Haloacid dehalogenase-like hydrolase LCQ53_13675 PF01479 S4 domain LCQ53_13675 PF00849 RNA pseudouridylate synthase LCQ53_13680 PF03838 Recombination protein U LCQ53_13685 PF08340 Domain of unknown function (DUF1732) LCQ53_13685 PF03755 YicC-like family, N-terminal region LCQ53_13690 PF00625 Guanylate kinase LCQ53_13695 PF01192 RNA polymerase Rpb6 LCQ53_13700 PF02673 Bacitracin resistance protein BacA LCQ53_13705 PF00140 Sigma-70 factor, region 1.2 LCQ53_13705 PF04542 Sigma-70 region 2 LCQ53_13705 PF04539 Sigma-70 region 3 LCQ53_13705 PF04545 Sigma-70, region 4 LCQ53_13710 PF13286 Phosphohydrolase-associated domain LCQ53_13710 PF01966 HD domain LCQ53_13715 PF01807 CHC2 zinc finger LCQ53_13715 PF10410 DnaB-helicase binding domain of primase LCQ53_13715 PF08275 DNA primase catalytic core, N-terminal domain LCQ53_13720 PF04539 Sigma-70 region 3 LCQ53_13720 PF04542 Sigma-70 region 2 LCQ53_13720 PF04545 Sigma-70, region 4 LCQ53_13720 PF00140 Sigma-70 factor, region 1.2 LCQ53_13720 PF03979 Sigma-70 factor, region 1.1 LCQ53_13725 PF04816 tRNA (adenine(22)-N(1))-methyltransferase LCQ53_13730 PF01784 NIF3 (NGG1p interacting factor 3) LCQ53_13735 PF00485 Phosphoribulokinase / Uridine kinase family LCQ53_13770 PF01471 Putative peptidoglycan binding domain LCQ53_13770 PF07486 Cell Wall Hydrolase LCQ53_13785 PF00005 ABC transporter LCQ53_13800 PF03466 LysR substrate binding domain LCQ53_13800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LCQ53_13805 PF01381 Helix-turn-helix LCQ53_13810 PF01242 6-pyruvoyl tetrahydropterin synthase LCQ53_13815 PF04055 Radical SAM superfamily LCQ53_13820 PF01227 GTP cyclohydrolase I LCQ53_13825 PF06508 Queuosine biosynthesis protein QueC LCQ53_13830 PF00465 Iron-containing alcohol dehydrogenase LCQ53_13835 PF01638 HxlR-like helix-turn-helix LCQ53_13840 PF00857 Isochorismatase family LCQ53_13845 PF01638 HxlR-like helix-turn-helix LCQ53_13855 PF00310 Glutamine amidotransferases class-II LCQ53_13855 PF04898 Glutamate synthase central domain LCQ53_13855 PF01645 Conserved region in glutamate synthase LCQ53_13855 PF01493 GXGXG motif LCQ53_13860 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LCQ53_13860 PF07992 Pyridine nucleotide-disulphide oxidoreductase LCQ53_13900 PF04397 LytTr DNA-binding domain LCQ53_13900 PF00072 Response regulator receiver domain LCQ53_13905 PF01594 AI-2E family transporter LCQ53_13920 PF00205 Thiamine pyrophosphate enzyme, central domain LCQ53_13920 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LCQ53_13920 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LCQ53_13930 PF02082 Transcriptional regulator LCQ53_13935 PF01554 MatE LCQ53_13940 PF00291 Pyridoxal-phosphate dependent enzyme LCQ53_13945 PF01367 5'-3' exonuclease, C-terminal SAM fold LCQ53_13945 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LCQ53_13945 PF00476 DNA polymerase family A LCQ53_13950 PF01121 Dephospho-CoA kinase LCQ53_13955 PF14268 YoaP-like LCQ53_13955 PF00583 Acetyltransferase (GNAT) family LCQ53_13960 PF13739 Deacetylase PdaC LCQ53_13960 PF11738 Protein of unknown function (DUF3298) LCQ53_13965 PF08281 Sigma-70, region 4 LCQ53_13965 PF04542 Sigma-70 region 2 LCQ53_13970 PF00753 Metallo-beta-lactamase superfamily LCQ53_13980 PF05167 Uncharacterised ACR (DUF711) LCQ53_13985 PF07687 Peptidase dimerisation domain LCQ53_13985 PF01546 Peptidase family M20/M25/M40 LCQ53_13990 PF01479 S4 domain LCQ53_13990 PF00579 tRNA synthetases class I (W and Y) LCQ53_14020 PF00012 Hsp70 protein LCQ53_14025 PF01628 HrcA protein C terminal domain LCQ53_14030 PF01025 GrpE LCQ53_14035 PF00012 Hsp70 protein LCQ53_14040 PF01556 DnaJ C terminal domain LCQ53_14040 PF00684 DnaJ central domain LCQ53_14040 PF00226 DnaJ domain LCQ53_14055 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B LCQ53_14055 PF00175 Oxidoreductase NAD-binding domain LCQ53_14060 PF13187 4Fe-4S dicluster domain LCQ53_14060 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LCQ53_14060 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LCQ53_14065 PF00300 Histidine phosphatase superfamily (branch 1) LCQ53_14075 PF03471 Transporter associated domain LCQ53_14075 PF02080 TrkA-C domain LCQ53_14075 PF00999 Sodium/hydrogen exchanger family LCQ53_14090 PF04452 RNA methyltransferase LCQ53_14095 PF00266 Aminotransferase class-V LCQ53_14100 PF02568 Thiamine biosynthesis protein (ThiI) LCQ53_14100 PF02926 THUMP domain LCQ53_14110 PF00919 Uncharacterized protein family UPF0004 LCQ53_14110 PF01938 TRAM domain LCQ53_14110 PF04055 Radical SAM superfamily LCQ53_14115 PF06135 IreB regulatory phosphoprotein LCQ53_14120 PF03652 Holliday junction resolvase LCQ53_14130 PF01475 Ferric uptake regulator family LCQ53_14135 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain LCQ53_14135 PF00753 Metallo-beta-lactamase superfamily LCQ53_14135 PF17770 Ribonuclease J C-terminal domain LCQ53_14145 PF01596 O-methyltransferase LCQ53_14150 PF16325 Peptidase family U32 C-terminal domain LCQ53_14150 PF01136 Peptidase family U32 LCQ53_14160 PF03109 ABC1 family LCQ53_14170 PF17932 Tetracyclin repressor-like, C-terminal domain LCQ53_14170 PF00440 Bacterial regulatory proteins, tetR family LCQ53_14180 PF13344 Haloacid dehalogenase-like hydrolase LCQ53_14180 PF00293 NUDIX domain LCQ53_14185 PF00072 Response regulator receiver domain LCQ53_14185 PF00486 Transcriptional regulatory protein, C terminal LCQ53_14190 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_14190 PF18698 Histidine kinase sensor domain LCQ53_14190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_14190 PF00672 HAMP domain LCQ53_14200 PF02557 D-alanyl-D-alanine carboxypeptidase LCQ53_14220 PF04542 Sigma-70 region 2 LCQ53_14220 PF04545 Sigma-70, region 4 LCQ53_14235 PF01209 ubiE/COQ5 methyltransferase family LCQ53_14250 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LCQ53_14255 PF07992 Pyridine nucleotide-disulphide oxidoreductase LCQ53_14255 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LCQ53_14260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LCQ53_14260 PF03466 LysR substrate binding domain LCQ53_14265 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LCQ53_14265 PF08501 Shikimate dehydrogenase substrate binding domain LCQ53_14270 PF07690 Major Facilitator Superfamily LCQ53_14275 PF01487 Type I 3-dehydroquinase LCQ53_14285 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LCQ53_14285 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LCQ53_14290 PF03480 Bacterial extracellular solute-binding protein, family 7 LCQ53_14295 PF08501 Shikimate dehydrogenase substrate binding domain LCQ53_14295 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LCQ53_14300 PF02311 AraC-like ligand binding domain LCQ53_14300 PF12833 Helix-turn-helix domain LCQ53_14305 PF07690 Major Facilitator Superfamily LCQ53_14310 PF01144 Coenzyme A transferase LCQ53_14315 PF01575 MaoC like domain LCQ53_14320 PF02558 Ketopantoate reductase PanE/ApbA LCQ53_14320 PF08546 Ketopantoate reductase PanE/ApbA C terminal LCQ53_14330 PF01220 Dehydroquinase class II LCQ53_14335 PF01497 Periplasmic binding protein LCQ53_14350 PF03703 Bacterial PH domain LCQ53_14355 PF03703 Bacterial PH domain LCQ53_14360 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LCQ53_14360 PF07992 Pyridine nucleotide-disulphide oxidoreductase LCQ53_14365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LCQ53_14365 PF03466 LysR substrate binding domain LCQ53_14370 PF01202 Shikimate kinase LCQ53_14375 PF00465 Iron-containing alcohol dehydrogenase LCQ53_14380 PF08207 Elongation factor P (EF-P) KOW-like domain LCQ53_14380 PF01132 Elongation factor P (EF-P) OB domain LCQ53_14380 PF09285 Elongation factor P, C-terminal LCQ53_14405 PF06686 Stage III sporulation protein AC/AD protein family LCQ53_14430 PF03780 Asp23 family, cell envelope-related function LCQ53_14435 PF01029 NusB family LCQ53_14440 PF13742 OB-fold nucleic acid binding domain LCQ53_14440 PF02601 Exonuclease VII, large subunit LCQ53_14445 PF02609 Exonuclease VII small subunit LCQ53_14450 PF00348 Polyprenyl synthetase LCQ53_14455 PF02780 Transketolase, C-terminal domain LCQ53_14455 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LCQ53_14455 PF02779 Transketolase, pyrimidine binding domain LCQ53_14460 PF01728 FtsJ-like methyltransferase LCQ53_14460 PF01479 S4 domain LCQ53_14465 PF01513 ATP-NAD kinase LCQ53_14470 PF01316 Arginine repressor, DNA binding domain LCQ53_14470 PF02863 Arginine repressor, C-terminal domain LCQ53_14475 PF13476 AAA domain LCQ53_14480 PF05580 SpoIVB peptidase S55 LCQ53_14480 PF17820 PDZ domain LCQ53_14485 PF08769 Sporulation initiation factor Spo0A C terminal LCQ53_14485 PF00072 Response regulator receiver domain LCQ53_14490 PF08769 Sporulation initiation factor Spo0A C terminal LCQ53_14490 PF00072 Response regulator receiver domain LCQ53_14495 PF05670 NFACT protein RNA binding domain LCQ53_14505 PF13393 Histidyl-tRNA synthetase LCQ53_14510 PF01634 ATP phosphoribosyltransferase LCQ53_14515 PF00815 Histidinol dehydrogenase LCQ53_14520 PF00475 Imidazoleglycerol-phosphate dehydratase LCQ53_14525 PF01502 Phosphoribosyl-AMP cyclohydrolase LCQ53_14525 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase LCQ53_14535 PF01411 tRNA synthetases class II (A) LCQ53_14535 PF02272 DHHA1 domain LCQ53_14535 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LCQ53_14550 PF01165 Ribosomal protein S21 LCQ53_14565 PF02562 PhoH-like protein LCQ53_14570 PF02130 Uncharacterized protein family UPF0054 LCQ53_14590 PF01676 Metalloenzyme superfamily LCQ53_14605 PF13597 Anaerobic ribonucleoside-triphosphate reductase LCQ53_14605 PF03477 ATP cone domain LCQ53_14615 PF00696 Amino acid kinase family LCQ53_14615 PF01472 PUA domain LCQ53_14620 PF05979 Bacterial protein of unknown function (DUF896) LCQ53_14625 PF00171 Aldehyde dehydrogenase family LCQ53_14630 PF10531 SLBB domain LCQ53_14630 PF13237 4Fe-4S dicluster domain LCQ53_14630 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LCQ53_14630 PF13375 RnfC Barrel sandwich hybrid domain LCQ53_14635 PF03116 NQR2, RnfD, RnfE family LCQ53_14640 PF04205 FMN-binding domain LCQ53_14645 PF02508 Rnf-Nqr subunit, membrane protein LCQ53_14650 PF02508 Rnf-Nqr subunit, membrane protein LCQ53_14655 PF04060 Putative Fe-S cluster LCQ53_14660 PF05239 PRC-barrel domain LCQ53_14665 PF03477 ATP cone domain LCQ53_14670 PF13335 Magnesium chelatase, subunit ChlI C-terminal LCQ53_14670 PF01078 Magnesium chelatase, subunit ChlI LCQ53_14675 PF02481 DNA recombination-mediator protein A LCQ53_14675 PF17782 DprA winged helix domain LCQ53_14680 PF01131 DNA topoisomerase LCQ53_14680 PF01751 Toprim domain LCQ53_14680 PF01396 Topoisomerase DNA binding C4 zinc finger LCQ53_14685 PF06018 CodY GAF-like domain LCQ53_14685 PF08222 CodY helix-turn-helix domain LCQ53_14690 PF00318 Ribosomal protein S2 LCQ53_14695 PF00889 Elongation factor TS LCQ53_14700 PF13302 Acetyltransferase (GNAT) domain LCQ53_14710 PF01209 ubiE/COQ5 methyltransferase family LCQ53_14720 PF05231 MASE1 LCQ53_14720 PF00563 EAL domain LCQ53_14720 PF08448 PAS fold LCQ53_14720 PF13426 PAS domain LCQ53_14720 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_14720 PF08447 PAS fold LCQ53_14725 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LCQ53_14725 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LCQ53_14730 PF13673 Acetyltransferase (GNAT) domain LCQ53_14730 PF13302 Acetyltransferase (GNAT) domain LCQ53_14730 PF00117 Glutamine amidotransferase class-I LCQ53_14730 PF00958 GMP synthase C terminal domain LCQ53_14730 PF03352 Methyladenine glycosylase LCQ53_14735 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_14750 PF00817 impB/mucB/samB family LCQ53_14750 PF11799 impB/mucB/samB family C-terminal domain LCQ53_14750 PF11798 IMS family HHH motif LCQ53_14785 PF13426 PAS domain LCQ53_14785 PF08448 PAS fold LCQ53_14785 PF08447 PAS fold LCQ53_14785 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_14785 PF00563 EAL domain LCQ53_14785 PF05231 MASE1 LCQ53_14790 PF03707 Bacterial signalling protein N terminal repeat LCQ53_14790 PF00563 EAL domain LCQ53_14790 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_14795 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LCQ53_14795 PF00072 Response regulator receiver domain LCQ53_14795 PF01627 Hpt domain LCQ53_14795 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_14795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_14795 PF00672 HAMP domain LCQ53_14825 PF00291 Pyridoxal-phosphate dependent enzyme LCQ53_14830 PF00294 pfkB family carbohydrate kinase LCQ53_14840 PF02361 Cobalt transport protein LCQ53_14845 PF00005 ABC transporter LCQ53_14850 PF00005 ABC transporter LCQ53_14855 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LCQ53_14860 PF00294 pfkB family carbohydrate kinase LCQ53_14865 PF01156 Inosine-uridine preferring nucleoside hydrolase LCQ53_14875 PF00465 Iron-containing alcohol dehydrogenase LCQ53_14880 PF00294 pfkB family carbohydrate kinase LCQ53_14885 PF01156 Inosine-uridine preferring nucleoside hydrolase LCQ53_14895 PF08220 DeoR-like helix-turn-helix domain LCQ53_14895 PF00455 DeoR C terminal sensor domain LCQ53_14900 PF13187 4Fe-4S dicluster domain LCQ53_14900 PF04055 Radical SAM superfamily LCQ53_14905 PF02901 Pyruvate formate lyase-like LCQ53_14905 PF01228 Glycine radical LCQ53_14910 PF00923 Transaldolase/Fructose-6-phosphate aldolase LCQ53_14915 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LCQ53_14915 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LCQ53_14920 PF03928 Haem-degrading LCQ53_14925 PF00072 Response regulator receiver domain LCQ53_14925 PF00486 Transcriptional regulatory protein, C terminal LCQ53_14935 PF00005 ABC transporter LCQ53_14950 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase LCQ53_14965 PF00455 DeoR C terminal sensor domain LCQ53_14965 PF08220 DeoR-like helix-turn-helix domain LCQ53_14970 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_14970 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_14970 PF00874 PRD domain LCQ53_14970 PF05043 Mga helix-turn-helix domain LCQ53_14970 PF08279 HTH domain LCQ53_14975 PF08125 Mannitol dehydrogenase C-terminal domain LCQ53_14975 PF01232 Mannitol dehydrogenase Rossmann domain LCQ53_14980 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LCQ53_14985 PF01380 SIS domain LCQ53_14990 PF00465 Iron-containing alcohol dehydrogenase LCQ53_15000 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LCQ53_15000 PF00037 4Fe-4S binding domain LCQ53_15000 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LCQ53_15005 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LCQ53_15005 PF00037 4Fe-4S binding domain LCQ53_15005 PF02906 Iron only hydrogenase large subunit, C-terminal domain LCQ53_15005 PF02256 Iron hydrogenase small subunit LCQ53_15010 PF13685 Iron-containing alcohol dehydrogenase LCQ53_15015 PF00596 Class II Aldolase and Adducin N-terminal domain LCQ53_15020 PF00107 Zinc-binding dehydrogenase LCQ53_15020 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_15025 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_15030 PF03611 PTS system sugar-specific permease component LCQ53_15040 PF05043 Mga helix-turn-helix domain LCQ53_15040 PF00874 PRD domain LCQ53_15040 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_15040 PF08279 HTH domain LCQ53_15045 PF01381 Helix-turn-helix LCQ53_15060 PF01022 Bacterial regulatory protein, arsR family LCQ53_15070 PF00403 Heavy-metal-associated domain LCQ53_15080 PF12892 Spy0128-like isopeptide containing domain LCQ53_15090 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LCQ53_15090 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LCQ53_15090 PF01488 Shikimate / quinate 5-dehydrogenase LCQ53_15095 PF01488 Shikimate / quinate 5-dehydrogenase LCQ53_15095 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LCQ53_15100 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LCQ53_15100 PF03900 Porphobilinogen deaminase, C-terminal domain LCQ53_15105 PF00490 Delta-aminolevulinic acid dehydratase LCQ53_15110 PF00202 Aminotransferase class-III LCQ53_15115 PF01888 CbiD LCQ53_15120 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LCQ53_15125 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LCQ53_15130 PF11761 Cobalamin biosynthesis central region LCQ53_15130 PF11760 Cobalamin synthesis G N-terminal LCQ53_15130 PF01890 Cobalamin synthesis G C-terminus LCQ53_15135 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LCQ53_15135 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LCQ53_15140 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LCQ53_15145 PF07685 CobB/CobQ-like glutamine amidotransferase domain LCQ53_15145 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LCQ53_15150 PF02277 Phosphoribosyltransferase LCQ53_15160 PF02654 Cobalamin-5-phosphate synthase LCQ53_15175 PF03186 CobD/Cbib protein LCQ53_15180 PF00155 Aminotransferase class I and II LCQ53_15185 PF07685 CobB/CobQ-like glutamine amidotransferase domain LCQ53_15190 PF02570 Precorrin-8X methylmutase LCQ53_15205 PF17932 Tetracyclin repressor-like, C-terminal domain LCQ53_15205 PF00440 Bacterial regulatory proteins, tetR family LCQ53_15210 PF01554 MatE LCQ53_15215 PF01545 Cation efflux family LCQ53_15215 PF16916 Dimerisation domain of Zinc Transporter LCQ53_15255 PF00486 Transcriptional regulatory protein, C terminal LCQ53_15255 PF00072 Response regulator receiver domain LCQ53_15260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_15260 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_15265 PF00005 ABC transporter LCQ53_15265 PF12704 MacB-like periplasmic core domain LCQ53_15265 PF02687 FtsX-like permease family LCQ53_15285 PF17932 Tetracyclin repressor-like, C-terminal domain LCQ53_15285 PF00440 Bacterial regulatory proteins, tetR family LCQ53_15290 PF00005 ABC transporter LCQ53_15300 PF00132 Bacterial transferase hexapeptide (six repeats) LCQ53_15310 PF01554 MatE LCQ53_15315 PF06180 Cobalt chelatase (CbiK) LCQ53_15320 PF00005 ABC transporter LCQ53_15325 PF02361 Cobalt transport protein LCQ53_15335 PF01891 Cobalt uptake substrate-specific transmembrane region LCQ53_15340 PF02602 Uroporphyrinogen-III synthase HemD LCQ53_15340 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LCQ53_15360 PF00075 RNase H LCQ53_15365 PF13419 Haloacid dehalogenase-like hydrolase LCQ53_15380 PF01496 V-type ATPase 116kDa subunit family LCQ53_15400 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LCQ53_15400 PF16886 ATPsynthase alpha/beta subunit N-term extension LCQ53_15400 PF02874 ATP synthase alpha/beta family, beta-barrel domain LCQ53_15405 PF02874 ATP synthase alpha/beta family, beta-barrel domain LCQ53_15405 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LCQ53_15410 PF01813 ATP synthase subunit D LCQ53_15420 PF00171 Aldehyde dehydrogenase family LCQ53_15425 PF06463 Molybdenum Cofactor Synthesis C LCQ53_15425 PF04055 Radical SAM superfamily LCQ53_15430 PF00258 Flavodoxin LCQ53_15430 PF00753 Metallo-beta-lactamase superfamily LCQ53_15450 PF01048 Phosphorylase superfamily LCQ53_15455 PF01979 Amidohydrolase family LCQ53_15460 PF02580 D-Tyr-tRNA(Tyr) deacylase LCQ53_15465 PF00696 Amino acid kinase family LCQ53_15470 PF01765 Ribosome recycling factor LCQ53_15475 PF01255 Putative undecaprenyl diphosphate synthase LCQ53_15485 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LCQ53_15485 PF13288 DXP reductoisomerase C-terminal domain LCQ53_15485 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LCQ53_15490 PF17820 PDZ domain LCQ53_15490 PF02163 Peptidase family M50 LCQ53_15495 PF04551 GcpE protein LCQ53_15500 PF00929 Exonuclease LCQ53_15500 PF11490 DNA polymerase III polC-type N-terminus II LCQ53_15500 PF07733 Bacterial DNA polymerase III alpha NTPase domain LCQ53_15500 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LCQ53_15500 PF14579 Helix-hairpin-helix motif LCQ53_15500 PF02811 PHP domain LCQ53_15505 PF01966 HD domain LCQ53_15510 PF00403 Heavy-metal-associated domain LCQ53_15515 PF02583 Metal-sensitive transcriptional repressor LCQ53_15525 PF01297 Zinc-uptake complex component A periplasmic LCQ53_15530 PF00005 ABC transporter LCQ53_15535 PF00950 ABC 3 transport family LCQ53_15545 PF00580 UvrD/REP helicase N-terminal domain LCQ53_15545 PF13361 UvrD-like helicase C-terminal domain LCQ53_15550 PF02576 RimP N-terminal domain LCQ53_15550 PF17384 RimP C-terminal SH3 domain LCQ53_15555 PF13184 NusA-like KH domain LCQ53_15555 PF08529 NusA N-terminal domain LCQ53_15555 PF00575 S1 RNA binding domain LCQ53_15560 PF04296 Protein of unknown function (DUF448) LCQ53_15570 PF00009 Elongation factor Tu GTP binding domain LCQ53_15570 PF11987 Translation-initiation factor 2 LCQ53_15570 PF04760 Translation initiation factor IF-2, N-terminal region LCQ53_15575 PF02033 Ribosome-binding factor A LCQ53_15580 PF02272 DHHA1 domain LCQ53_15580 PF01368 DHH family LCQ53_15585 PF01509 TruB family pseudouridylate synthase (N terminal domain) LCQ53_15585 PF16198 tRNA pseudouridylate synthase B C-terminal domain LCQ53_15590 PF06574 FAD synthetase LCQ53_15590 PF01687 Riboflavin kinase LCQ53_15610 PF01070 FMN-dependent dehydrogenase LCQ53_15620 PF00672 HAMP domain LCQ53_15620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_15620 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_15620 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LCQ53_15620 PF00072 Response regulator receiver domain LCQ53_15620 PF01627 Hpt domain LCQ53_15625 PF00589 Phage integrase family LCQ53_15625 PF02899 Phage integrase, N-terminal SAM-like domain LCQ53_15630 PF01066 CDP-alcohol phosphatidyltransferase LCQ53_15655 PF02824 TGS domain LCQ53_15655 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LCQ53_15655 PF03129 Anticodon binding domain LCQ53_15655 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LCQ53_15675 PF01171 PP-loop family LCQ53_15680 PF13676 TIR domain LCQ53_15685 PF02661 Fic/DOC family LCQ53_15685 PF12728 Helix-turn-helix domain LCQ53_15690 PF07739 TipAS antibiotic-recognition domain LCQ53_15690 PF13411 MerR HTH family regulatory protein LCQ53_15700 PF00083 Sugar (and other) transporter LCQ53_15715 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LCQ53_15715 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LCQ53_15720 PF01842 ACT domain LCQ53_15720 PF10369 Small subunit of acetolactate synthase LCQ53_15725 PF03816 Cell envelope-related transcriptional attenuator domain LCQ53_15730 PF03816 Cell envelope-related transcriptional attenuator domain LCQ53_15735 PF00535 Glycosyl transferase family 2 LCQ53_15740 PF03989 DNA gyrase C-terminal domain, beta-propeller LCQ53_15740 PF00521 DNA gyrase/topoisomerase IV, subunit A LCQ53_15745 PF00204 DNA gyrase B LCQ53_15745 PF00986 DNA gyrase B subunit, carboxyl terminus LCQ53_15745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_15745 PF01751 Toprim domain LCQ53_15750 PF12792 CSS motif domain associated with EAL LCQ53_15750 PF00563 EAL domain LCQ53_15770 PF04070 Domain of unknown function (DUF378) LCQ53_15800 PF07687 Peptidase dimerisation domain LCQ53_15800 PF01546 Peptidase family M20/M25/M40 LCQ53_15805 PF07687 Peptidase dimerisation domain LCQ53_15805 PF01546 Peptidase family M20/M25/M40 LCQ53_15830 PF01416 tRNA pseudouridine synthase LCQ53_15860 PF00005 ABC transporter LCQ53_15865 PF13411 MerR HTH family regulatory protein LCQ53_15895 PF13280 WYL domain LCQ53_15895 PF08279 HTH domain LCQ53_15920 PF00465 Iron-containing alcohol dehydrogenase LCQ53_15925 PF04198 Putative sugar-binding domain LCQ53_15930 PF03613 PTS system mannose/fructose/sorbose family IID component LCQ53_15935 PF03830 PTS system sorbose subfamily IIB component LCQ53_15940 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_15940 PF00107 Zinc-binding dehydrogenase LCQ53_15945 PF01116 Fructose-bisphosphate aldolase class-II LCQ53_15950 PF01966 HD domain LCQ53_15960 PF12804 MobA-like NTP transferase domain LCQ53_15960 PF00132 Bacterial transferase hexapeptide (six repeats) LCQ53_15965 PF01751 Toprim domain LCQ53_15965 PF01131 DNA topoisomerase LCQ53_15975 PF13419 Haloacid dehalogenase-like hydrolase LCQ53_15980 PF08448 PAS fold LCQ53_15980 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_15985 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_15985 PF00072 Response regulator receiver domain LCQ53_15990 PF00464 Serine hydroxymethyltransferase LCQ53_15995 PF01842 ACT domain LCQ53_15995 PF13840 ACT domain LCQ53_15995 PF00696 Amino acid kinase family LCQ53_16000 PF02938 GAD domain LCQ53_16000 PF00152 tRNA synthetases class II (D, K and N) LCQ53_16000 PF01336 OB-fold nucleic acid binding domain LCQ53_16010 PF02913 FAD linked oxidases, C-terminal domain LCQ53_16010 PF01565 FAD binding domain LCQ53_16015 PF00766 Electron transfer flavoprotein FAD-binding domain LCQ53_16015 PF01012 Electron transfer flavoprotein domain LCQ53_16020 PF01012 Electron transfer flavoprotein domain LCQ53_16025 PF07729 FCD domain LCQ53_16025 PF00392 Bacterial regulatory proteins, gntR family LCQ53_16030 PF01012 Electron transfer flavoprotein domain LCQ53_16030 PF00766 Electron transfer flavoprotein FAD-binding domain LCQ53_16035 PF01012 Electron transfer flavoprotein domain LCQ53_16040 PF02770 Acyl-CoA dehydrogenase, middle domain LCQ53_16040 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LCQ53_16040 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LCQ53_16045 PF02913 FAD linked oxidases, C-terminal domain LCQ53_16045 PF01565 FAD binding domain LCQ53_16050 PF09861 Lactate racemase N-terminal domain LCQ53_16055 PF02652 L-lactate permease LCQ53_16060 PF03129 Anticodon binding domain LCQ53_16060 PF13393 Histidyl-tRNA synthetase LCQ53_16070 PF04055 Radical SAM superfamily LCQ53_16075 PF00753 Metallo-beta-lactamase superfamily LCQ53_16080 PF13291 ACT domain LCQ53_16080 PF04607 Region found in RelA / SpoT proteins LCQ53_16080 PF02824 TGS domain LCQ53_16085 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain LCQ53_16085 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain LCQ53_16090 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LCQ53_16090 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LCQ53_16100 PF02590 Predicted SPOUT methyltransferase LCQ53_16110 PF07963 Prokaryotic N-terminal methylation motif LCQ53_16110 PF14245 Type IV pilin PilA LCQ53_16115 PF00149 Calcineurin-like phosphoesterase LCQ53_16115 PF10518 TAT (twin-arginine translocation) pathway signal sequence LCQ53_16130 PF01638 HxlR-like helix-turn-helix LCQ53_16140 PF01966 HD domain LCQ53_16140 PF13286 Phosphohydrolase-associated domain LCQ53_16145 PF01966 HD domain LCQ53_16145 PF13286 Phosphohydrolase-associated domain LCQ53_16160 PF00689 Cation transporting ATPase, C-terminus LCQ53_16160 PF00690 Cation transporter/ATPase, N-terminus LCQ53_16175 PF02308 MgtC family LCQ53_16180 PF01545 Cation efflux family LCQ53_16180 PF16916 Dimerisation domain of Zinc Transporter LCQ53_16185 PF00072 Response regulator receiver domain LCQ53_16185 PF00486 Transcriptional regulatory protein, C terminal LCQ53_16190 PF00690 Cation transporter/ATPase, N-terminus LCQ53_16190 PF00689 Cation transporting ATPase, C-terminus LCQ53_16215 PF00589 Phage integrase family LCQ53_16215 PF14659 Phage integrase, N-terminal SAM-like domain LCQ53_16225 PF00437 Type II/IV secretion system protein LCQ53_16230 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LCQ53_16230 PF00437 Type II/IV secretion system protein LCQ53_16245 PF00482 Type II secretion system (T2SS), protein F LCQ53_16250 PF01478 Type IV leader peptidase family LCQ53_16250 PF06750 Bacterial Peptidase A24 N-terminal domain LCQ53_16295 PF13411 MerR HTH family regulatory protein LCQ53_16305 PF00672 HAMP domain LCQ53_16305 PF14827 Double sensory domain of two-component sensor kinase LCQ53_16305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_16305 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_16305 PF13426 PAS domain LCQ53_16315 PF00005 ABC transporter LCQ53_16320 PF00072 Response regulator receiver domain LCQ53_16320 PF00486 Transcriptional regulatory protein, C terminal LCQ53_16325 PF02590 Predicted SPOUT methyltransferase LCQ53_16330 PF04073 Aminoacyl-tRNA editing domain LCQ53_16335 PF04298 Putative neutral zinc metallopeptidase LCQ53_16340 PF05922 Peptidase inhibitor I9 LCQ53_16340 PF00082 Subtilase family LCQ53_16345 PF01709 Transcriptional regulator LCQ53_16350 PF00571 CBS domain LCQ53_16350 PF03471 Transporter associated domain LCQ53_16350 PF01595 Cyclin M transmembrane N-terminal domain LCQ53_16355 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system LCQ53_16360 PF01168 Alanine racemase, N-terminal domain LCQ53_16360 PF00842 Alanine racemase, C-terminal domain LCQ53_16365 PF01256 Carbohydrate kinase LCQ53_16365 PF03853 YjeF-related protein N-terminus LCQ53_16370 PF01648 4'-phosphopantetheinyl transferase superfamily LCQ53_16375 PF02629 CoA binding domain LCQ53_16375 PF06971 Putative DNA-binding protein N-terminus LCQ53_16380 PF16326 ABC transporter C-terminal domain LCQ53_16380 PF12848 ABC transporter LCQ53_16380 PF00005 ABC transporter LCQ53_16385 PF00535 Glycosyl transferase family 2 LCQ53_16390 PF13411 MerR HTH family regulatory protein LCQ53_16395 PF00005 ABC transporter LCQ53_16405 PF05922 Peptidase inhibitor I9 LCQ53_16405 PF00082 Subtilase family LCQ53_16410 PF04055 Radical SAM superfamily LCQ53_16410 PF06969 HemN C-terminal domain LCQ53_16415 PF06421 GTP-binding protein LepA C-terminus LCQ53_16415 PF03144 Elongation factor Tu domain 2 LCQ53_16415 PF00009 Elongation factor Tu GTP binding domain LCQ53_16415 PF00679 Elongation factor G C-terminus LCQ53_16425 PF03418 Germination protease LCQ53_16430 PF01649 Ribosomal protein S20 LCQ53_16440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LCQ53_16440 PF03466 LysR substrate binding domain LCQ53_16445 PF12804 MobA-like NTP transferase domain LCQ53_16450 PF03772 Competence protein LCQ53_16450 PF13567 Domain of unknown function (DUF4131) LCQ53_16450 PF00753 Metallo-beta-lactamase superfamily LCQ53_16460 PF13426 PAS domain LCQ53_16460 PF00672 HAMP domain LCQ53_16460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_16460 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_16465 PF00486 Transcriptional regulatory protein, C terminal LCQ53_16465 PF00072 Response regulator receiver domain LCQ53_16480 PF00202 Aminotransferase class-III LCQ53_16485 PF00696 Amino acid kinase family LCQ53_16490 PF01960 ArgJ family LCQ53_16495 PF02774 Semialdehyde dehydrogenase, dimerisation domain LCQ53_16495 PF01118 Semialdehyde dehydrogenase, NAD binding domain LCQ53_16500 PF00764 Arginosuccinate synthase LCQ53_16505 PF02698 DUF218 domain LCQ53_16510 PF01131 DNA topoisomerase LCQ53_16510 PF01751 Toprim domain LCQ53_16515 PF12796 Ankyrin repeats (3 copies) LCQ53_16515 PF02661 Fic/DOC family LCQ53_16525 PF14698 Argininosuccinate lyase C-terminal LCQ53_16525 PF00206 Lyase LCQ53_16535 PF08241 Methyltransferase domain LCQ53_16540 PF05552 Conserved TM helix LCQ53_16540 PF00924 Mechanosensitive ion channel LCQ53_16550 PF02774 Semialdehyde dehydrogenase, dimerisation domain LCQ53_16550 PF01118 Semialdehyde dehydrogenase, NAD binding domain LCQ53_16555 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LCQ53_16555 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LCQ53_16560 PF00266 Aminotransferase class-V LCQ53_16565 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LCQ53_16565 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LCQ53_16565 PF00205 Thiamine pyrophosphate enzyme, central domain LCQ53_16570 PF00920 Dehydratase family LCQ53_16575 PF00180 Isocitrate/isopropylmalate dehydrogenase LCQ53_16590 PF01520 N-acetylmuramoyl-L-alanine amidase LCQ53_16595 PF01520 N-acetylmuramoyl-L-alanine amidase LCQ53_16595 PF05036 Sporulation related domain LCQ53_16605 PF01726 LexA DNA binding domain LCQ53_16605 PF00717 Peptidase S24-like