locus-tag class description DO83_00060 PF01554 MatE DO83_00075 PF01741 Large-conductance mechanosensitive channel, MscL DO83_00085 PF06574 FAD synthetase DO83_00085 PF01687 Riboflavin kinase DO83_00090 PF16198 tRNA pseudouridylate synthase B C-terminal domain DO83_00090 PF01509 TruB family pseudouridylate synthase (N terminal domain) DO83_00095 PF01368 DHH family DO83_00095 PF02272 DHHA1 domain DO83_00100 PF02033 Ribosome-binding factor A DO83_00105 PF04760 Translation initiation factor IF-2, N-terminal region DO83_00105 PF11987 Translation-initiation factor 2 DO83_00105 PF00009 Elongation factor Tu GTP binding domain DO83_00115 PF04296 Protein of unknown function (DUF448) DO83_00120 PF08529 NusA N-terminal domain DO83_00120 PF00575 S1 RNA binding domain DO83_00120 PF13184 NusA-like KH domain DO83_00130 PF11490 DNA polymerase III polC-type N-terminus II DO83_00130 PF07733 Bacterial DNA polymerase III alpha NTPase domain DO83_00130 PF00929 Exonuclease DO83_00130 PF02811 PHP domain DO83_00130 PF14579 Helix-hairpin-helix motif DO83_00130 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DO83_00135 PF04551 GcpE protein DO83_00140 PF17820 PDZ domain DO83_00140 PF02163 Peptidase family M50 DO83_00145 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain DO83_00145 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase DO83_00145 PF13288 DXP reductoisomerase C-terminal domain DO83_00155 PF01255 Putative undecaprenyl diphosphate synthase DO83_00160 PF01765 Ribosome recycling factor DO83_00165 PF00696 Amino acid kinase family DO83_00180 PF01869 BadF/BadG/BcrA/BcrD ATPase family DO83_00190 PF03109 ABC1 family DO83_00200 PF02580 D-Tyr-tRNA(Tyr) deacylase DO83_00205 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain DO83_00205 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain DO83_00210 PF10369 Small subunit of acetolactate synthase DO83_00215 PF03816 Cell envelope-related transcriptional attenuator domain DO83_00220 PF00535 Glycosyl transferase family 2 DO83_00225 PF00521 DNA gyrase/topoisomerase IV, subunit A DO83_00225 PF03989 DNA gyrase C-terminal domain, beta-propeller DO83_00230 PF00204 DNA gyrase B DO83_00230 PF01751 Toprim domain DO83_00230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DO83_00230 PF00986 DNA gyrase B subunit, carboxyl terminus DO83_00250 PF00072 Response regulator receiver domain DO83_00250 PF08769 Sporulation initiation factor Spo0A C terminal DO83_00255 PF00072 Response regulator receiver domain DO83_00255 PF08769 Sporulation initiation factor Spo0A C terminal DO83_00260 PF08769 Sporulation initiation factor Spo0A C terminal DO83_00260 PF00072 Response regulator receiver domain DO83_00270 PF13476 AAA domain DO83_00275 PF12320 Type 5 capsule protein repressor C-terminal domain DO83_00275 PF00149 Calcineurin-like phosphoesterase DO83_00280 PF05580 SpoIVB peptidase S55 DO83_00280 PF17820 PDZ domain DO83_00285 PF02463 RecF/RecN/SMC N terminal domain DO83_00290 PF02863 Arginine repressor, C-terminal domain DO83_00290 PF01316 Arginine repressor, DNA binding domain DO83_00295 PF01513 ATP-NAD kinase DO83_00300 PF01479 S4 domain DO83_00300 PF01728 FtsJ-like methyltransferase DO83_00305 PF02779 Transketolase, pyrimidine binding domain DO83_00305 PF13292 1-deoxy-D-xylulose-5-phosphate synthase DO83_00305 PF02780 Transketolase, C-terminal domain DO83_00310 PF00348 Polyprenyl synthetase DO83_00315 PF02609 Exonuclease VII small subunit DO83_00320 PF13742 OB-fold nucleic acid binding domain DO83_00320 PF02601 Exonuclease VII, large subunit DO83_00325 PF01029 NusB family DO83_00330 PF03780 Asp23 family, cell envelope-related function DO83_00340 PF00474 Sodium:solute symporter family DO83_00420 PF00005 ABC transporter DO83_00420 PF13732 Domain of unknown function (DUF4162) DO83_00435 PF00512 His Kinase A (phospho-acceptor) domain DO83_00435 PF11808 Phosphate regulon sensor protein PhoR DO83_00435 PF00989 PAS fold DO83_00435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DO83_00440 PF00072 Response regulator receiver domain DO83_00440 PF00486 Transcriptional regulatory protein, C terminal DO83_00460 PF01554 MatE DO83_00465 PF01066 CDP-alcohol phosphatidyltransferase DO83_00475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DO83_00475 PF00512 His Kinase A (phospho-acceptor) domain DO83_00475 PF16736 Single Cache-like DO83_00475 PF00989 PAS fold DO83_00480 PF00072 Response regulator receiver domain DO83_00480 PF00486 Transcriptional regulatory protein, C terminal DO83_00485 PF13091 PLD-like domain DO83_00495 PF00285 Citrate synthase, C-terminal domain DO83_00500 PF13091 PLD-like domain DO83_00505 PF04607 Region found in RelA / SpoT proteins DO83_00510 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family DO83_00525 PF18008 Replication initiator protein A C-terminal domain DO83_00525 PF06970 Replication initiator protein A (RepA) N-terminus DO83_00530 PF17762 HTH domain found in ParB protein DO83_00530 PF02195 ParB-like nuclease domain DO83_00540 PF02195 ParB-like nuclease domain DO83_00540 PF17762 HTH domain found in ParB protein DO83_00550 PF00248 Aldo/keto reductase family DO83_00565 PF13411 MerR HTH family regulatory protein DO83_00600 PF01053 Cys/Met metabolism PLP-dependent enzyme DO83_00605 PF01709 Transcriptional regulator DO83_00610 PF00571 CBS domain DO83_00610 PF03471 Transporter associated domain DO83_00615 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system DO83_00620 PF00842 Alanine racemase, C-terminal domain DO83_00620 PF01168 Alanine racemase, N-terminal domain DO83_00625 PF03853 YjeF-related protein N-terminus DO83_00625 PF01256 Carbohydrate kinase DO83_00630 PF01648 4'-phosphopantetheinyl transferase superfamily DO83_00640 PF12848 ABC transporter DO83_00640 PF16326 ABC transporter C-terminal domain DO83_00640 PF00005 ABC transporter DO83_00645 PF00535 Glycosyl transferase family 2 DO83_00650 PF06280 Fn3-like domain DO83_00650 PF00746 LPXTG cell wall anchor motif DO83_00650 PF02225 PA domain DO83_00650 PF00082 Subtilase family DO83_00655 PF04055 Radical SAM superfamily DO83_00655 PF06969 HemN C-terminal domain DO83_00660 PF03144 Elongation factor Tu domain 2 DO83_00660 PF06421 GTP-binding protein LepA C-terminus DO83_00660 PF00009 Elongation factor Tu GTP binding domain DO83_00660 PF00679 Elongation factor G C-terminus DO83_00670 PF03418 Germination protease DO83_00675 PF01649 Ribosomal protein S20 DO83_00680 PF06144 DNA polymerase III, delta subunit DO83_00685 PF13567 Domain of unknown function (DUF4131) DO83_00685 PF03772 Competence protein DO83_00685 PF00753 Metallo-beta-lactamase superfamily DO83_00695 PF13426 PAS domain DO83_00695 PF00512 His Kinase A (phospho-acceptor) domain DO83_00695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DO83_00695 PF00672 HAMP domain DO83_00700 PF00072 Response regulator receiver domain DO83_00700 PF00486 Transcriptional regulatory protein, C terminal DO83_00715 PF00202 Aminotransferase class-III DO83_00720 PF00696 Amino acid kinase family DO83_00725 PF01960 ArgJ family DO83_00730 PF02774 Semialdehyde dehydrogenase, dimerisation domain DO83_00730 PF01118 Semialdehyde dehydrogenase, NAD binding domain DO83_00735 PF00764 Arginosuccinate synthase DO83_00760 PF14698 Argininosuccinate lyase C-terminal DO83_00760 PF00206 Lyase DO83_00780 PF01174 SNO glutamine amidotransferase family DO83_00785 PF01680 SOR/SNZ family DO83_00790 PF00392 Bacterial regulatory proteins, gntR family DO83_00790 PF00155 Aminotransferase class I and II DO83_00820 PF01556 DnaJ C terminal domain DO83_00820 PF00226 DnaJ domain DO83_00820 PF00684 DnaJ central domain DO83_00825 PF00012 Hsp70 protein DO83_00830 PF01025 GrpE DO83_00835 PF01628 HrcA protein C terminal domain DO83_00850 PF08220 DeoR-like helix-turn-helix domain DO83_00850 PF00455 DeoR C terminal sensor domain DO83_00855 PF00923 Transaldolase/Fructose-6-phosphate aldolase DO83_00860 PF04055 Radical SAM superfamily DO83_00860 PF13187 4Fe-4S dicluster domain DO83_00875 PF01022 Bacterial regulatory protein, arsR family DO83_00905 PF00579 tRNA synthetases class I (W and Y) DO83_00905 PF01479 S4 domain DO83_00910 PF05167 Uncharacterised ACR (DUF711) DO83_00920 PF00753 Metallo-beta-lactamase superfamily DO83_00925 PF01121 Dephospho-CoA kinase DO83_00930 PF01367 5'-3' exonuclease, C-terminal SAM fold DO83_00930 PF00476 DNA polymerase family A DO83_00930 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DO83_00935 PF00291 Pyridoxal-phosphate dependent enzyme DO83_00940 PF02082 Transcriptional regulator DO83_00950 PF00293 NUDIX domain DO83_00965 PF01594 AI-2E family transporter DO83_00975 PF07992 Pyridine nucleotide-disulphide oxidoreductase DO83_00975 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DO83_00985 PF01554 MatE DO83_00995 PF00465 Iron-containing alcohol dehydrogenase DO83_01000 PF06508 Queuosine biosynthesis protein QueC DO83_01005 PF01227 GTP cyclohydrolase I DO83_01010 PF04055 Radical SAM superfamily DO83_01015 PF01242 6-pyruvoyl tetrahydropterin synthase DO83_01020 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DO83_01020 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DO83_01025 PF01795 MraW methylase family DO83_01030 PF00271 Helicase conserved C-terminal domain DO83_01030 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) DO83_01030 PF04851 Type III restriction enzyme, res subunit DO83_01030 PF08463 EcoEI R protein C-terminal DO83_01040 PF02899 Phage integrase, N-terminal SAM-like domain DO83_01040 PF00589 Phage integrase family DO83_01045 PF12728 Helix-turn-helix domain DO83_01045 PF02661 Fic/DOC family DO83_01055 PF12161 HsdM N-terminal domain DO83_01055 PF02384 N-6 DNA Methylase DO83_01060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DO83_01060 PF03466 LysR substrate binding domain DO83_01070 PF00005 ABC transporter DO83_01075 PF00005 ABC transporter DO83_01075 PF08402 TOBE domain DO83_01090 PF07486 Cell Wall Hydrolase DO83_01090 PF01471 Putative peptidoglycan binding domain DO83_01110 PF01418 Helix-turn-helix domain, rpiR family DO83_01110 PF01380 SIS domain DO83_01115 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase DO83_01120 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DO83_01120 PF02824 TGS domain DO83_01120 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DO83_01120 PF03129 Anticodon binding domain DO83_01125 PF01784 NIF3 (NGG1p interacting factor 3) DO83_01130 PF04816 tRNA (adenine(22)-N(1))-methyltransferase DO83_01135 PF00140 Sigma-70 factor, region 1.2 DO83_01135 PF04539 Sigma-70 region 3 DO83_01135 PF04542 Sigma-70 region 2 DO83_01135 PF03979 Sigma-70 factor, region 1.1 DO83_01135 PF04545 Sigma-70, region 4 DO83_01140 PF01807 CHC2 zinc finger DO83_01140 PF08275 DNA primase catalytic core, N-terminal domain DO83_01140 PF10410 DnaB-helicase binding domain of primase DO83_01145 PF01966 HD domain DO83_01145 PF13286 Phosphohydrolase-associated domain DO83_01150 PF04542 Sigma-70 region 2 DO83_01150 PF04545 Sigma-70, region 4 DO83_01150 PF03979 Sigma-70 factor, region 1.1 DO83_01150 PF04539 Sigma-70 region 3 DO83_01150 PF00140 Sigma-70 factor, region 1.2 DO83_01155 PF02673 Bacitracin resistance protein BacA DO83_01160 PF01192 RNA polymerase Rpb6 DO83_01165 PF00625 Guanylate kinase DO83_01170 PF08340 Domain of unknown function (DUF1732) DO83_01170 PF03755 YicC-like family, N-terminal region DO83_01175 PF03838 Recombination protein U DO83_01180 PF01479 S4 domain DO83_01180 PF00849 RNA pseudouridylate synthase DO83_01185 PF00106 short chain dehydrogenase DO83_01190 PF13419 Haloacid dehalogenase-like hydrolase DO83_01195 PF01479 S4 domain DO83_01195 PF00849 RNA pseudouridylate synthase DO83_01200 PF01189 16S rRNA methyltransferase RsmB/F DO83_01200 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF DO83_01200 PF17126 RsmF rRNA methyltransferase first C-terminal domain DO83_01205 PF04607 Region found in RelA / SpoT proteins DO83_01210 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DO83_01210 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DO83_01215 PF09547 Stage IV sporulation protein A (spore_IV_A) DO83_01220 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DO83_01220 PF08501 Shikimate dehydrogenase substrate binding domain DO83_01225 PF02875 Mur ligase family, glutamate ligase domain DO83_01225 PF01225 Mur ligase family, catalytic domain DO83_01225 PF08245 Mur ligase middle domain DO83_01230 PF01678 Diaminopimelate epimerase DO83_01235 PF12897 Alanine-glyoxylate amino-transferase DO83_01240 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DO83_01240 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DO83_01250 PF01926 50S ribosome-binding GTPase DO83_01250 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal DO83_01260 PF02021 Uncharacterised protein family UPF0102 DO83_01265 PF01351 Ribonuclease HII DO83_01270 PF10502 Signal peptidase, peptidase S26 DO83_01275 PF01926 50S ribosome-binding GTPase DO83_01280 PF10502 Signal peptidase, peptidase S26 DO83_01285 PF01245 Ribosomal protein L19 DO83_01295 PF01746 tRNA (Guanine-1)-methyltransferase DO83_01300 PF05239 PRC-barrel domain DO83_01300 PF01782 RimM N-terminal domain DO83_01305 PF07687 Peptidase dimerisation domain DO83_01305 PF01546 Peptidase family M20/M25/M40 DO83_01320 PF03169 OPT oligopeptide transporter protein DO83_01340 PF08323 Starch synthase catalytic domain DO83_01340 PF00534 Glycosyl transferases group 1 DO83_01350 PF05105 Bacteriophage holin family DO83_01365 PF00589 Phage integrase family DO83_01365 PF02899 Phage integrase, N-terminal SAM-like domain DO83_01470 PF10668 Phage terminase small subunit DO83_01470 PF03592 Terminase small subunit DO83_01640 PF01209 ubiE/COQ5 methyltransferase family DO83_01655 PF01554 MatE DO83_01665 PF01668 SmpB protein DO83_01670 PF00773 RNB domain DO83_01670 PF08206 Ribonuclease B OB domain DO83_01670 PF17876 Cold shock domain DO83_01670 PF00575 S1 RNA binding domain DO83_01680 PF00113 Enolase, C-terminal TIM barrel domain DO83_01680 PF03952 Enolase, N-terminal domain DO83_01695 PF09820 Predicted AAA-ATPase DO83_01695 PF08011 PD-(D/E)XK nuclease superfamily DO83_01720 PF01554 MatE DO83_01740 PF01676 Metalloenzyme superfamily DO83_01740 PF06415 BPG-independent PGAM N-terminus (iPGM_N) DO83_01750 PF01676 Metalloenzyme superfamily DO83_01755 PF00121 Triosephosphate isomerase DO83_01760 PF00162 Phosphoglycerate kinase DO83_01765 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DO83_01765 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DO83_01770 PF02690 Na+/Pi-cotransporter DO83_01785 PF00877 NlpC/P60 family DO83_01820 PF02001 Protein of unknown function DUF134 DO83_01845 PF02664 S-Ribosylhomocysteinase (LuxS) DO83_01855 PF03600 Citrate transporter DO83_01870 PF00886 Ribosomal protein S16 DO83_01875 PF02978 Signal peptide binding domain DO83_01875 PF02881 SRP54-type protein, helical bundle domain DO83_01875 PF00448 SRP54-type protein, GTPase domain DO83_01880 PF04297 Putative helix-turn-helix protein, YlxM / p13 like DO83_01885 PF12848 ABC transporter DO83_01885 PF00005 ABC transporter DO83_01890 PF01171 PP-loop family DO83_01900 PF00512 His Kinase A (phospho-acceptor) domain DO83_01900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DO83_01900 PF16736 Single Cache-like DO83_01900 PF00989 PAS fold DO83_01905 PF00072 Response regulator receiver domain DO83_01905 PF00486 Transcriptional regulatory protein, C terminal DO83_01925 PF00994 Probable molybdopterin binding domain DO83_01925 PF18146 Damage-inducible protein CinA KH domain DO83_01925 PF02464 Competence-damaged protein DO83_01930 PF01066 CDP-alcohol phosphatidyltransferase DO83_01935 PF18693 TRAM domain DO83_01935 PF04055 Radical SAM superfamily DO83_01935 PF00919 Uncharacterized protein family UPF0004 DO83_01940 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DO83_01940 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DO83_01945 PF01268 Formate--tetrahydrofolate ligase DO83_01950 PF17854 FtsK alpha domain DO83_01950 PF09397 Ftsk gamma domain DO83_01950 PF01580 FtsK/SpoIIIE family DO83_01950 PF13491 4TM region of DNA translocase FtsK/SpoIIIE DO83_01960 PF00574 Clp protease DO83_01965 PF00364 Biotin-requiring enzyme DO83_01965 PF02785 Biotin carboxylase C-terminal domain DO83_01965 PF00289 Biotin carboxylase, N-terminal domain DO83_01965 PF02436 Conserved carboxylase domain DO83_01965 PF00682 HMGL-like DO83_01965 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DO83_01975 PF02224 Cytidylate kinase DO83_01985 PF12323 Helix-turn-helix domain DO83_01985 PF01385 Probable transposase DO83_01985 PF07282 Putative transposase DNA-binding domain DO83_01995 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DO83_01995 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DO83_02000 PF00248 Aldo/keto reductase family DO83_02005 PF02547 Queuosine biosynthesis protein DO83_02010 PF01554 MatE DO83_02015 PF00877 NlpC/P60 family DO83_02055 PF00209 Sodium:neurotransmitter symporter family DO83_02065 PF13443 Cro/C1-type HTH DNA-binding domain DO83_02075 PF01588 Putative tRNA binding domain DO83_02075 PF03147 Ferredoxin-fold anticodon binding domain DO83_02075 PF03484 tRNA synthetase B5 domain DO83_02075 PF03483 B3/4 domain DO83_02075 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain DO83_02080 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain DO83_02080 PF01409 tRNA synthetases class II core domain (F) DO83_02090 PF00367 phosphotransferase system, EIIB DO83_02090 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DO83_02090 PF02378 Phosphotransferase system, EIIC DO83_02095 PF01238 Phosphomannose isomerase type I DO83_02105 PF03613 PTS system mannose/fructose/sorbose family IID component DO83_02110 PF03609 PTS system sorbose-specific iic component DO83_02115 PF03610 PTS system fructose IIA component DO83_02115 PF03830 PTS system sorbose subfamily IIB component DO83_02120 PF03123 CAT RNA binding domain DO83_02120 PF00874 PRD domain DO83_02125 PF03631 Virulence factor BrkB DO83_02130 PF00365 Phosphofructokinase DO83_02135 PF00557 Metallopeptidase family M24 DO83_02135 PF01321 Creatinase/Prolidase N-terminal domain DO83_02140 PF00497 Bacterial extracellular solute-binding proteins, family 3 DO83_02145 PF04542 Sigma-70 region 2 DO83_02145 PF04545 Sigma-70, region 4 DO83_02145 PF04539 Sigma-70 region 3 DO83_02155 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DO83_02155 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DO83_02160 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DO83_02175 PF01430 Hsp33 protein DO83_02180 PF13649 Methyltransferase domain DO83_02185 PF13091 PLD-like domain DO83_02190 PF02581 Thiamine monophosphate synthase DO83_02200 PF12705 PD-(D/E)XK nuclease superfamily DO83_02200 PF13361 UvrD-like helicase C-terminal domain DO83_02200 PF00580 UvrD/REP helicase N-terminal domain DO83_02205 PF12705 PD-(D/E)XK nuclease superfamily DO83_02220 PF00528 Binding-protein-dependent transport system inner membrane component DO83_02225 PF00005 ABC transporter DO83_02225 PF09383 NIL domain DO83_02230 PF03180 NLPA lipoprotein DO83_02335 PF13361 UvrD-like helicase C-terminal domain DO83_02335 PF00580 UvrD/REP helicase N-terminal domain DO83_02345 PF01371 Trp repressor protein DO83_02350 PF01235 Sodium:alanine symporter family DO83_02355 PF00209 Sodium:neurotransmitter symporter family DO83_02360 PF02844 Phosphoribosylglycinamide synthetase, N domain DO83_02360 PF02843 Phosphoribosylglycinamide synthetase, C domain DO83_02360 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DO83_02365 PF00551 Formyl transferase DO83_02370 PF02769 AIR synthase related protein, C-terminal domain DO83_02370 PF00586 AIR synthase related protein, N-terminal domain DO83_02380 PF00731 AIR carboxylase DO83_02400 PF00156 Phosphoribosyl transferase domain DO83_02410 PF01180 Dihydroorotate dehydrogenase DO83_02415 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B DO83_02420 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DO83_02440 PF05690 Thiazole biosynthesis protein ThiG DO83_02445 PF02597 ThiS family DO83_02445 PF05690 Thiazole biosynthesis protein ThiG DO83_02500 PF00877 NlpC/P60 family DO83_02590 PF00589 Phage integrase family DO83_02600 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system DO83_02600 PF01381 Helix-turn-helix DO83_02735 PF04172 LrgB-like family DO83_02740 PF03788 LrgA family DO83_02750 PF07745 Glycosyl hydrolase family 53 DO83_02770 PF04542 Sigma-70 region 2 DO83_02770 PF08281 Sigma-70, region 4 DO83_02775 PF08032 RNA 2'-O ribose methyltransferase substrate binding DO83_02775 PF00588 SpoU rRNA Methylase family DO83_02780 PF00636 Ribonuclease III domain DO83_02785 PF01406 tRNA synthetases class I (C) catalytic domain DO83_02785 PF09190 DALR domain DO83_02790 PF00132 Bacterial transferase hexapeptide (six repeats) DO83_02795 PF02632 BioY family DO83_02805 PF00132 Bacterial transferase hexapeptide (six repeats) DO83_02805 PF12464 Maltose acetyltransferase DO83_02840 PF00682 HMGL-like DO83_02840 PF08502 LeuA allosteric (dimerisation) domain DO83_02845 PF00809 Pterin binding enzyme DO83_02845 PF02574 Homocysteine S-methyltransferase DO83_02845 PF02965 Vitamin B12 dependent methionine synthase, activation domain DO83_02845 PF02607 B12 binding domain DO83_02845 PF02310 B12 binding domain DO83_02855 PF02219 Methylenetetrahydrofolate reductase DO83_02860 PF09186 Domain of unknown function (DUF1949) DO83_02860 PF01205 Uncharacterized protein family UPF0029 DO83_02870 PF00905 Penicillin binding protein transpeptidase domain DO83_02870 PF00912 Transglycosylase DO83_02875 PF03862 SpoVAC/SpoVAEB sporulation membrane protein DO83_02880 PF07451 Stage V sporulation protein AD (SpoVAD) DO83_02885 PF03862 SpoVAC/SpoVAEB sporulation membrane protein DO83_02890 PF13782 Stage V sporulation protein AB DO83_02895 PF12164 Stage V sporulation protein AA DO83_02905 PF01926 50S ribosome-binding GTPase DO83_02910 PF01522 Polysaccharide deacetylase DO83_02910 PF00457 Glycosyl hydrolases family 11 DO83_02910 PF03422 Carbohydrate binding module (family 6) DO83_02915 PF00120 Glutamine synthetase, catalytic domain DO83_02915 PF12437 Glutamine synthetase type III N terminal DO83_02915 PF18318 Glutamine synthetase C-terminal domain DO83_02930 PF00005 ABC transporter DO83_02945 PF01522 Polysaccharide deacetylase DO83_02950 PF01979 Amidohydrolase family DO83_02955 PF00367 phosphotransferase system, EIIB DO83_02955 PF02378 Phosphotransferase system, EIIC DO83_02960 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DO83_02960 PF00367 phosphotransferase system, EIIB DO83_02960 PF02378 Phosphotransferase system, EIIC DO83_02965 PF03123 CAT RNA binding domain DO83_02965 PF00874 PRD domain DO83_02970 PF01520 N-acetylmuramoyl-L-alanine amidase DO83_02970 PF08239 Bacterial SH3 domain DO83_02995 PF16363 GDP-mannose 4,6 dehydratase DO83_03000 PF00483 Nucleotidyl transferase DO83_03005 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase DO83_03010 PF04321 RmlD substrate binding domain DO83_03015 PF08241 Methyltransferase domain DO83_03030 PF00330 Aconitase family (aconitate hydratase) DO83_03035 PF00694 Aconitase C-terminal domain DO83_03040 PF00330 Aconitase family (aconitate hydratase) DO83_03045 PF00694 Aconitase C-terminal domain DO83_03060 PF02386 Cation transport protein DO83_03065 PF02254 TrkA-N domain DO83_03065 PF02080 TrkA-C domain DO83_03070 PF01380 SIS domain DO83_03075 PF00834 Ribulose-phosphate 3 epimerase family DO83_03090 PF03611 PTS system sugar-specific permease component DO83_03100 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DO83_03100 PF00874 PRD domain DO83_03100 PF05043 Mga helix-turn-helix domain DO83_03100 PF08279 HTH domain DO83_03100 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DO83_03105 PF04607 Region found in RelA / SpoT proteins DO83_03110 PF01925 Sulfite exporter TauE/SafE DO83_03120 PF05067 Manganese containing catalase DO83_03145 PF00474 Sodium:solute symporter family DO83_03150 PF04024 PspC domain DO83_03170 PF02638 Glycosyl hydrolase-like 10 DO83_03175 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DO83_03180 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DO83_03185 PF02153 Prephenate dehydrogenase DO83_03185 PF01842 ACT domain DO83_03190 PF13291 ACT domain DO83_03190 PF04607 Region found in RelA / SpoT proteins DO83_03190 PF02824 TGS domain DO83_03200 PF02127 Aminopeptidase I zinc metalloprotease (M18) DO83_03215 PF00455 DeoR C terminal sensor domain DO83_03215 PF08220 DeoR-like helix-turn-helix domain DO83_03220 PF02378 Phosphotransferase system, EIIC DO83_03220 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DO83_03225 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DO83_03225 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DO83_03230 PF01791 DeoC/LacD family aldolase DO83_03245 PF00465 Iron-containing alcohol dehydrogenase DO83_03255 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DO83_03255 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DO83_03255 PF00205 Thiamine pyrophosphate enzyme, central domain DO83_03260 PF00294 pfkB family carbohydrate kinase DO83_03265 PF00356 Bacterial regulatory proteins, lacI family DO83_03270 PF00455 DeoR C terminal sensor domain DO83_03270 PF08220 DeoR-like helix-turn-helix domain DO83_03280 PF01261 Xylose isomerase-like TIM barrel DO83_03285 PF01261 Xylose isomerase-like TIM barrel DO83_03295 PF01261 Xylose isomerase-like TIM barrel DO83_03300 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DO83_03300 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DO83_03305 PF00356 Bacterial regulatory proteins, lacI family DO83_03310 PF01116 Fructose-bisphosphate aldolase class-II DO83_03325 PF01261 Xylose isomerase-like TIM barrel DO83_03335 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DO83_03335 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DO83_03340 PF00356 Bacterial regulatory proteins, lacI family DO83_03345 PF01047 MarR family DO83_03350 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DO83_03350 PF02770 Acyl-CoA dehydrogenase, middle domain DO83_03350 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DO83_03355 PF00378 Enoyl-CoA hydratase/isomerase DO83_03360 PF01144 Coenzyme A transferase DO83_03370 PF01012 Electron transfer flavoprotein domain DO83_03370 PF00766 Electron transfer flavoprotein FAD-binding domain DO83_03370 PF13237 4Fe-4S dicluster domain DO83_03375 PF01012 Electron transfer flavoprotein domain DO83_03380 PF00766 Electron transfer flavoprotein FAD-binding domain DO83_03380 PF01012 Electron transfer flavoprotein domain DO83_03385 PF01012 Electron transfer flavoprotein domain DO83_03390 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DO83_03390 PF02770 Acyl-CoA dehydrogenase, middle domain DO83_03390 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DO83_03395 PF00294 pfkB family carbohydrate kinase DO83_03400 PF08244 Glycosyl hydrolases family 32 C terminal DO83_03400 PF00251 Glycosyl hydrolases family 32 N-terminal domain DO83_03405 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DO83_03405 PF00367 phosphotransferase system, EIIB DO83_03405 PF02378 Phosphotransferase system, EIIC DO83_03410 PF13407 Periplasmic binding protein domain DO83_03410 PF00356 Bacterial regulatory proteins, lacI family DO83_03415 PF13514 AAA domain DO83_03420 PF12320 Type 5 capsule protein repressor C-terminal domain DO83_03420 PF00149 Calcineurin-like phosphoesterase DO83_03445 PF00005 ABC transporter DO83_03445 PF00664 ABC transporter transmembrane region DO83_03470 PF00535 Glycosyl transferase family 2 DO83_03495 PF00534 Glycosyl transferases group 1 DO83_03535 PF17103 Stealth protein CR4, conserved region 4 DO83_03535 PF17101 Stealth protein CR1, conserved region 1 DO83_03535 PF11380 Stealth protein CR2, conserved region 2 DO83_03575 PF13286 Phosphohydrolase-associated domain DO83_03575 PF01966 HD domain DO83_03610 PF00132 Bacterial transferase hexapeptide (six repeats) DO83_03620 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 DO83_03620 PF00535 Glycosyl transferase family 2 DO83_03635 PF13439 Glycosyltransferase Family 4 DO83_03635 PF00534 Glycosyl transferases group 1 DO83_03640 PF02397 Bacterial sugar transferase DO83_03645 PF00155 Aminotransferase class I and II DO83_03670 PF13749 Putative ATP-dependent DNA helicase recG C-terminal DO83_03670 PF17191 RecG wedge domain DO83_03670 PF00270 DEAD/DEAH box helicase DO83_03675 PF01235 Sodium:alanine symporter family DO83_03680 PF00950 ABC 3 transport family DO83_03685 PF00005 ABC transporter DO83_03690 PF01297 Zinc-uptake complex component A periplasmic DO83_03710 PF02146 Sir2 family DO83_03715 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DO83_03715 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DO83_03720 PF00885 6,7-dimethyl-8-ribityllumazine synthase DO83_03730 PF00677 Lumazine binding domain DO83_03735 PF01872 RibD C-terminal domain DO83_03735 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DO83_03745 PF00293 NUDIX domain DO83_03755 PF00285 Citrate synthase, C-terminal domain DO83_03760 PF01047 MarR family DO83_03765 PF07733 Bacterial DNA polymerase III alpha NTPase domain DO83_03765 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DO83_03765 PF01336 OB-fold nucleic acid binding domain DO83_03765 PF14579 Helix-hairpin-helix motif DO83_03765 PF02811 PHP domain DO83_03775 PF13932 GidA associated domain DO83_03775 PF01134 Glucose inhibited division protein A DO83_03795 PF04463 Protein of unknown function (DUF523) DO83_03805 PF01336 OB-fold nucleic acid binding domain DO83_03805 PF00152 tRNA synthetases class II (D, K and N) DO83_03805 PF02938 GAD domain DO83_03810 PF01207 Dihydrouridine synthase (Dus) DO83_03815 PF01259 SAICAR synthetase DO83_03820 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DO83_03820 PF00128 Alpha amylase, catalytic domain DO83_03830 PF01235 Sodium:alanine symporter family DO83_03840 PF00664 ABC transporter transmembrane region DO83_03840 PF00005 ABC transporter DO83_03845 PF00005 ABC transporter DO83_03845 PF00664 ABC transporter transmembrane region DO83_03850 PF01047 MarR family DO83_03855 PF07516 SecA Wing and Scaffold domain DO83_03855 PF01043 SecA preprotein cross-linking domain DO83_03855 PF07517 SecA DEAD-like domain DO83_03855 PF02810 SEC-C motif DO83_03865 PF12002 MgsA AAA+ ATPase C terminal DO83_03865 PF05496 Holliday junction DNA helicase RuvB P-loop domain DO83_03865 PF16193 AAA C-terminal domain DO83_03880 PF12116 Stage III sporulation protein D DO83_03885 PF02492 CobW/HypB/UreG, nucleotide-binding domain DO83_03885 PF07683 Cobalamin synthesis protein cobW C-terminal domain DO83_03890 PF07282 Putative transposase DNA-binding domain DO83_03890 PF01385 Probable transposase DO83_03890 PF12323 Helix-turn-helix domain DO83_03900 PF07683 Cobalamin synthesis protein cobW C-terminal domain DO83_03900 PF02492 CobW/HypB/UreG, nucleotide-binding domain DO83_03905 PF00465 Iron-containing alcohol dehydrogenase DO83_03920 PF00313 'Cold-shock' DNA-binding domain DO83_03940 PF08281 Sigma-70, region 4 DO83_03940 PF04542 Sigma-70 region 2 DO83_03945 PF02934 GatB/GatE catalytic domain DO83_03945 PF02637 GatB domain DO83_03950 PF01425 Amidase DO83_03955 PF02686 Glu-tRNAGln amidotransferase C subunit DO83_03965 PF00251 Glycosyl hydrolases family 32 N-terminal domain DO83_03965 PF08244 Glycosyl hydrolases family 32 C terminal DO83_03970 PF02378 Phosphotransferase system, EIIC DO83_03970 PF00367 phosphotransferase system, EIIB DO83_03975 PF00251 Glycosyl hydrolases family 32 N-terminal domain DO83_03975 PF08244 Glycosyl hydrolases family 32 C terminal DO83_03980 PF00356 Bacterial regulatory proteins, lacI family DO83_03985 PF00132 Bacterial transferase hexapeptide (six repeats) DO83_04000 PF03193 RsgA GTPase DO83_04000 PF16745 RsgA N-terminal domain DO83_04005 PF00069 Protein kinase domain DO83_04005 PF03793 PASTA domain DO83_04015 PF04055 Radical SAM superfamily DO83_04020 PF01029 NusB family DO83_04020 PF01189 16S rRNA methyltransferase RsmB/F DO83_04030 PF01327 Polypeptide deformylase DO83_04035 PF18319 PriA DNA helicase Cys-rich region (CRR) domain DO83_04035 PF18074 Primosomal protein N C-terminal domain DO83_04035 PF17764 3′ DNA-binding domain (3′BD) DO83_04035 PF00271 Helicase conserved C-terminal domain DO83_04035 PF04851 Type III restriction enzyme, res subunit DO83_04040 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DO83_04040 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DO83_04040 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DO83_04040 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DO83_04050 PF02779 Transketolase, pyrimidine binding domain DO83_04050 PF02780 Transketolase, C-terminal domain DO83_04055 PF00456 Transketolase, thiamine diphosphate binding domain DO83_04060 PF00923 Transaldolase/Fructose-6-phosphate aldolase DO83_04065 PF00356 Bacterial regulatory proteins, lacI family DO83_04075 PF00180 Isocitrate/isopropylmalate dehydrogenase DO83_04080 PF00392 Bacterial regulatory proteins, gntR family DO83_04080 PF07702 UTRA domain DO83_04085 PF01791 DeoC/LacD family aldolase DO83_04090 PF06560 Glucose-6-phosphate isomerase (GPI) DO83_04095 PF02256 Iron hydrogenase small subunit DO83_04095 PF02906 Iron only hydrogenase large subunit, C-terminal domain DO83_04095 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DO83_04095 PF00037 4Fe-4S binding domain DO83_04100 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DO83_04100 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DO83_04100 PF07992 Pyridine nucleotide-disulphide oxidoreductase DO83_04105 PF02645 Uncharacterised protein, DegV family COG1307 DO83_04115 PF13180 PDZ domain DO83_04120 PF02397 Bacterial sugar transferase DO83_04125 PF03816 Cell envelope-related transcriptional attenuator domain DO83_04130 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase DO83_04135 PF00535 Glycosyl transferase family 2 DO83_04140 PF00535 Glycosyl transferase family 2 DO83_04140 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase DO83_04150 PF01467 Cytidylyltransferase-like DO83_04155 PF00005 ABC transporter DO83_04160 PF01061 ABC-2 type transporter DO83_04170 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase DO83_04170 PF00535 Glycosyl transferase family 2 DO83_04175 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase DO83_04200 PF00535 Glycosyl transferase family 2 DO83_04205 PF00535 Glycosyl transferase family 2 DO83_04220 PF16363 GDP-mannose 4,6 dehydratase DO83_04230 PF03275 UDP-galactopyranose mutase DO83_04255 PF01943 Polysaccharide biosynthesis protein DO83_04280 PF00132 Bacterial transferase hexapeptide (six repeats) DO83_04300 PF02397 Bacterial sugar transferase DO83_04340 PF04138 GtrA-like protein DO83_04345 PF00535 Glycosyl transferase family 2 DO83_04355 PF02457 DisA bacterial checkpoint controller nucleotide-binding DO83_04370 PF02915 Rubrerythrin DO83_04380 PF01565 FAD binding domain DO83_04380 PF02913 FAD linked oxidases, C-terminal domain DO83_04385 PF00766 Electron transfer flavoprotein FAD-binding domain DO83_04385 PF01012 Electron transfer flavoprotein domain DO83_04390 PF01012 Electron transfer flavoprotein domain DO83_04395 PF00392 Bacterial regulatory proteins, gntR family DO83_04395 PF07729 FCD domain DO83_04400 PF03006 Haemolysin-III related DO83_04405 PF01541 GIY-YIG catalytic domain DO83_04415 PF08486 Stage II sporulation protein DO83_04425 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain DO83_04425 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain DO83_04425 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family DO83_04430 PF01553 Acyltransferase DO83_04455 PF00072 Response regulator receiver domain DO83_04455 PF00486 Transcriptional regulatory protein, C terminal DO83_04460 PF13426 PAS domain DO83_04460 PF00512 His Kinase A (phospho-acceptor) domain DO83_04460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DO83_04460 PF00672 HAMP domain DO83_04465 PF02441 Flavoprotein DO83_04465 PF04127 DNA / pantothenate metabolism flavoprotein DO83_04470 PF02261 Aspartate decarboxylase DO83_04475 PF02569 Pantoate-beta-alanine ligase DO83_04480 PF02548 Ketopantoate hydroxymethyltransferase DO83_04495 PF02653 Branched-chain amino acid transport system / permease component DO83_04505 PF02446 4-alpha-glucanotransferase DO83_04510 PF03949 Malic enzyme, NAD binding domain DO83_04510 PF00390 Malic enzyme, N-terminal domain DO83_04515 PF02780 Transketolase, C-terminal domain DO83_04515 PF02779 Transketolase, pyrimidine binding domain DO83_04515 PF13292 1-deoxy-D-xylulose-5-phosphate synthase DO83_04520 PF00456 Transketolase, thiamine diphosphate binding domain DO83_04525 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DO83_04530 PF03611 PTS system sugar-specific permease component DO83_04540 PF08279 HTH domain DO83_04540 PF05043 Mga helix-turn-helix domain DO83_04540 PF00874 PRD domain DO83_04540 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DO83_04540 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DO83_04565 PF04070 Domain of unknown function (DUF378) DO83_04570 PF01012 Electron transfer flavoprotein domain DO83_04570 PF00766 Electron transfer flavoprotein FAD-binding domain DO83_04575 PF01012 Electron transfer flavoprotein domain DO83_04580 PF02770 Acyl-CoA dehydrogenase, middle domain DO83_04580 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DO83_04580 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DO83_04585 PF01565 FAD binding domain DO83_04585 PF02913 FAD linked oxidases, C-terminal domain DO83_04590 PF02652 L-lactate permease DO83_04595 PF01546 Peptidase family M20/M25/M40 DO83_04595 PF07687 Peptidase dimerisation domain DO83_04600 PF00664 ABC transporter transmembrane region DO83_04600 PF00005 ABC transporter DO83_04605 PF00664 ABC transporter transmembrane region DO83_04605 PF00005 ABC transporter DO83_04610 PF04304 Protein of unknown function (DUF454) DO83_04615 PF00005 ABC transporter DO83_04620 PF01032 FecCD transport family DO83_04625 PF01497 Periplasmic binding protein DO83_04675 PF01791 DeoC/LacD family aldolase DO83_04690 PF01116 Fructose-bisphosphate aldolase class-II DO83_04700 PF03611 PTS system sugar-specific permease component DO83_04710 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DO83_04715 PF05043 Mga helix-turn-helix domain DO83_04715 PF08279 HTH domain DO83_04715 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DO83_04715 PF00874 PRD domain DO83_04730 PF07873 YabP family DO83_04735 PF01479 S4 domain DO83_04740 PF00216 Bacterial DNA-binding protein DO83_04745 PF13509 S1 domain DO83_04745 PF17783 CvfB-like winged helix domain DO83_04755 PF01183 Glycosyl hydrolases family 25 DO83_04755 PF08239 Bacterial SH3 domain DO83_04760 PF04203 Sortase domain DO83_04770 PF02742 Iron dependent repressor, metal binding and dimerisation domain DO83_04770 PF01325 Iron dependent repressor, N-terminal DNA binding domain DO83_04775 PF00403 Heavy-metal-associated domain DO83_04800 PF00258 Flavodoxin DO83_04810 PF00012 Hsp70 protein DO83_04815 PF00684 DnaJ central domain DO83_04815 PF01556 DnaJ C terminal domain DO83_04815 PF00226 DnaJ domain DO83_04830 PF00905 Penicillin binding protein transpeptidase domain DO83_04830 PF03717 Penicillin-binding Protein dimerisation domain DO83_04830 PF05223 NTF2-like N-terminal transpeptidase domain DO83_04835 PF00795 Carbon-nitrogen hydrolase DO83_04845 PF01594 AI-2E family transporter DO83_04850 PF12848 ABC transporter DO83_04850 PF16326 ABC transporter C-terminal domain DO83_04850 PF00005 ABC transporter DO83_04855 PF00085 Thioredoxin DO83_04860 PF02390 Putative methyltransferase DO83_04885 PF12704 MacB-like periplasmic core domain DO83_04885 PF00005 ABC transporter DO83_04885 PF02687 FtsX-like permease family DO83_04915 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DO83_04915 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain DO83_04920 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DO83_04920 PF02874 ATP synthase alpha/beta family, beta-barrel domain DO83_04925 PF00231 ATP synthase DO83_04930 PF00306 ATP synthase alpha/beta chain, C terminal domain DO83_04930 PF02874 ATP synthase alpha/beta family, beta-barrel domain DO83_04930 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DO83_04935 PF00213 ATP synthase delta (OSCP) subunit DO83_04940 PF00430 ATP synthase B/B' CF(0) DO83_04945 PF00137 ATP synthase subunit C DO83_04950 PF00119 ATP synthase A chain DO83_04965 PF00202 Aminotransferase class-III DO83_04985 PF13732 Domain of unknown function (DUF4162) DO83_04985 PF00005 ABC transporter DO83_05005 PF13276 HTH-like domain DO83_05005 PF00665 Integrase core domain DO83_05005 PF13333 Integrase core domain DO83_05015 PF13344 Haloacid dehalogenase-like hydrolase DO83_05020 PF00083 Sugar (and other) transporter DO83_05025 PF00149 Calcineurin-like phosphoesterase DO83_05030 PF00356 Bacterial regulatory proteins, lacI family DO83_05035 PF09339 IclR helix-turn-helix domain DO83_05035 PF01614 Bacterial transcriptional regulator DO83_05040 PF03061 Thioesterase superfamily DO83_05045 PF06496 Protein of unknown function (DUF1097) DO83_05050 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DO83_05050 PF07992 Pyridine nucleotide-disulphide oxidoreductase DO83_05055 PF01180 Dihydroorotate dehydrogenase DO83_05060 PF01979 Amidohydrolase family DO83_05075 PF01546 Peptidase family M20/M25/M40 DO83_05075 PF07687 Peptidase dimerisation domain DO83_05090 PF03061 Thioesterase superfamily DO83_05095 PF02515 CoA-transferase family III DO83_05100 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DO83_05100 PF02770 Acyl-CoA dehydrogenase, middle domain DO83_05100 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DO83_05110 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DO83_05110 PF02874 ATP synthase alpha/beta family, beta-barrel domain DO83_05120 PF00306 ATP synthase alpha/beta chain, C terminal domain DO83_05120 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DO83_05120 PF02874 ATP synthase alpha/beta family, beta-barrel domain DO83_05130 PF00430 ATP synthase B/B' CF(0) DO83_05135 PF00137 ATP synthase subunit C DO83_05140 PF00119 ATP synthase A chain DO83_05145 PF02502 Ribose/Galactose Isomerase DO83_05150 PF01300 Telomere recombination DO83_05150 PF03481 Putative GTP-binding controlling metal-binding DO83_05155 PF01520 N-acetylmuramoyl-L-alanine amidase DO83_05165 PF05389 Negative regulator of genetic competence (MecA) DO83_05170 PF00465 Iron-containing alcohol dehydrogenase DO83_05180 PF02733 Dak1 domain DO83_05185 PF00596 Class II Aldolase and Adducin N-terminal domain DO83_05195 PF02733 Dak1 domain DO83_05200 PF03611 PTS system sugar-specific permease component DO83_05225 PF00294 pfkB family carbohydrate kinase DO83_05235 PF13538 UvrD-like helicase C-terminal domain DO83_05235 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain DO83_05235 PF14490 Helix-hairpin-helix containing domain DO83_05245 PF10672 S-adenosylmethionine-dependent methyltransferase DO83_05245 PF01170 Putative RNA methylase family UPF0020 DO83_05245 PF02926 THUMP domain DO83_05265 PF00689 Cation transporting ATPase, C-terminus DO83_05265 PF00690 Cation transporter/ATPase, N-terminus DO83_05270 PF07282 Putative transposase DNA-binding domain DO83_05270 PF01385 Probable transposase DO83_05270 PF12323 Helix-turn-helix domain DO83_05285 PF04011 LemA family DO83_05320 PF00009 Elongation factor Tu GTP binding domain DO83_05320 PF03144 Elongation factor Tu domain 2 DO83_05320 PF03143 Elongation factor Tu C-terminal domain DO83_05325 PF00009 Elongation factor Tu GTP binding domain DO83_05325 PF00679 Elongation factor G C-terminus DO83_05325 PF03144 Elongation factor Tu domain 2 DO83_05325 PF03764 Elongation factor G, domain IV DO83_05325 PF14492 Elongation Factor G, domain II DO83_05330 PF00177 Ribosomal protein S7p/S5e DO83_05335 PF00164 Ribosomal protein S12/S23 DO83_05340 PF00623 RNA polymerase Rpb1, domain 2 DO83_05340 PF04997 RNA polymerase Rpb1, domain 1 DO83_05340 PF04998 RNA polymerase Rpb1, domain 5 DO83_05340 PF04983 RNA polymerase Rpb1, domain 3 DO83_05340 PF05000 RNA polymerase Rpb1, domain 4 DO83_05355 PF13419 Haloacid dehalogenase-like hydrolase DO83_05360 PF12323 Helix-turn-helix domain DO83_05360 PF01385 Probable transposase DO83_05360 PF07282 Putative transposase DNA-binding domain DO83_05370 PF00209 Sodium:neurotransmitter symporter family DO83_05375 PF01964 Radical SAM ThiC family DO83_05385 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DO83_05385 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DO83_05390 PF00542 Ribosomal protein L7/L12 C-terminal domain DO83_05390 PF16320 Ribosomal protein L7/L12 dimerisation domain DO83_05395 PF00466 Ribosomal protein L10 DO83_05400 PF00687 Ribosomal protein L1p/L10e family DO83_05405 PF03946 Ribosomal protein L11, N-terminal domain DO83_05405 PF00298 Ribosomal protein L11, RNA binding domain DO83_05410 PF02357 Transcription termination factor nusG DO83_05410 PF00467 KOW motif DO83_05420 PF00471 Ribosomal protein L33 DO83_05440 PF00990 Diguanylate cyclase, GGDEF domain DO83_05440 PF00563 EAL domain DO83_05440 PF00498 FHA domain DO83_05450 PF00293 NUDIX domain DO83_05465 PF00664 ABC transporter transmembrane region DO83_05465 PF00005 ABC transporter DO83_05475 PF07085 DRTGG domain DO83_05475 PF00571 CBS domain DO83_05475 PF01368 DHH family DO83_05475 PF02833 DHHA2 domain DO83_05480 PF00512 His Kinase A (phospho-acceptor) domain DO83_05480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DO83_05485 PF00486 Transcriptional regulatory protein, C terminal DO83_05485 PF00072 Response regulator receiver domain DO83_05500 PF00072 Response regulator receiver domain DO83_05500 PF01627 Hpt domain DO83_05500 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DO83_05500 PF00512 His Kinase A (phospho-acceptor) domain DO83_05500 PF00672 HAMP domain DO83_05500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DO83_05510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DO83_05510 PF17149 Periplasmic sensor domain found in signal transduction proteins DO83_05510 PF00672 HAMP domain DO83_05510 PF01627 Hpt domain DO83_05510 PF00512 His Kinase A (phospho-acceptor) domain DO83_05510 PF00072 Response regulator receiver domain DO83_05520 PF00072 Response regulator receiver domain DO83_05520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DO83_05520 PF09308 LuxQ, periplasmic DO83_05520 PF00512 His Kinase A (phospho-acceptor) domain DO83_05530 PF01235 Sodium:alanine symporter family DO83_05535 PF01554 MatE DO83_05545 PF03063 Prismane/CO dehydrogenase family DO83_05585 PF01047 MarR family DO83_05590 PF01638 HxlR-like helix-turn-helix DO83_05600 PF00248 Aldo/keto reductase family DO83_05605 PF00132 Bacterial transferase hexapeptide (six repeats) DO83_05605 PF12464 Maltose acetyltransferase DO83_05615 PF13411 MerR HTH family regulatory protein DO83_05625 PF01381 Helix-turn-helix DO83_05635 PF03575 Peptidase family S51 DO83_05650 PF08241 Methyltransferase domain DO83_05655 PF01588 Putative tRNA binding domain DO83_05655 PF09334 tRNA synthetases class I (M) DO83_05660 PF00589 Phage integrase family DO83_05660 PF02899 Phage integrase, N-terminal SAM-like domain DO83_05710 PF02920 DNA binding domain of tn916 integrase DO83_05710 PF00589 Phage integrase family DO83_05730 PF00005 ABC transporter DO83_05735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DO83_05735 PF00512 His Kinase A (phospho-acceptor) domain DO83_05740 PF00072 Response regulator receiver domain DO83_05740 PF00486 Transcriptional regulatory protein, C terminal DO83_05755 PF00005 ABC transporter DO83_05770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DO83_05770 PF00512 His Kinase A (phospho-acceptor) domain DO83_05770 PF07689 KaiB domain DO83_05775 PF00486 Transcriptional regulatory protein, C terminal DO83_05775 PF00072 Response regulator receiver domain DO83_05785 PF00486 Transcriptional regulatory protein, C terminal DO83_05785 PF00072 Response regulator receiver domain DO83_05805 PF00005 ABC transporter DO83_05810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DO83_05815 PF00486 Transcriptional regulatory protein, C terminal DO83_05815 PF00072 Response regulator receiver domain DO83_05845 PF00486 Transcriptional regulatory protein, C terminal DO83_05845 PF00072 Response regulator receiver domain DO83_05850 PF00005 ABC transporter DO83_05860 PF00512 His Kinase A (phospho-acceptor) domain DO83_05860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DO83_05885 PF02581 Thiamine monophosphate synthase DO83_05895 PF03070 TENA/THI-4/PQQC family DO83_05945 PF01726 LexA DNA binding domain DO83_05945 PF00717 Peptidase S24-like DO83_05970 PF09334 tRNA synthetases class I (M) DO83_05970 PF01588 Putative tRNA binding domain DO83_05990 PF00005 ABC transporter DO83_06060 PF00005 ABC transporter DO83_06060 PF12848 ABC transporter DO83_06115 PF03432 Relaxase/Mobilisation nuclease domain DO83_06140 PF04002 RadC-like JAB domain DO83_06150 PF16569 Gram-positive pilin backbone subunit 2, Cna-B-like domain DO83_06150 PF18002 T6 antigen Ig like domain DO83_06150 PF17802 Prealbumin-like fold domain DO83_06150 PF00746 LPXTG cell wall anchor motif DO83_06200 PF01336 OB-fold nucleic acid binding domain DO83_06200 PF00152 tRNA synthetases class II (D, K and N) DO83_06205 PF01272 Transcription elongation factor, GreA/GreB, C-term DO83_06205 PF03449 Transcription elongation factor, N-terminal DO83_06210 PF01207 Dihydrouridine synthase (Dus) DO83_06215 PF03309 Type III pantothenate kinase DO83_06225 PF03099 Biotin/lipoate A/B protein ligase family DO83_06225 PF08279 HTH domain DO83_06225 PF02237 Biotin protein ligase C terminal domain DO83_06230 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DO83_06230 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DO83_06240 PF01145 SPFH domain / Band 7 family DO83_06250 PF00588 SpoU rRNA Methylase family DO83_06250 PF08032 RNA 2'-O ribose methyltransferase substrate binding DO83_06255 PF02080 TrkA-C domain DO83_06255 PF02254 TrkA-N domain DO83_06260 PF02386 Cation transport protein DO83_06265 PF00365 Phosphofructokinase DO83_06270 PF14579 Helix-hairpin-helix motif DO83_06270 PF02811 PHP domain DO83_06270 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DO83_06270 PF07733 Bacterial DNA polymerase III alpha NTPase domain DO83_06270 PF01336 OB-fold nucleic acid binding domain DO83_06275 PF08245 Mur ligase middle domain DO83_06275 PF02875 Mur ligase family, glutamate ligase domain DO83_06275 PF01225 Mur ligase family, catalytic domain DO83_06280 PF02554 Carbon starvation protein CstA DO83_06280 PF13722 5TM C-terminal transporter carbon starvation CstA DO83_06285 PF00209 Sodium:neurotransmitter symporter family DO83_06295 PF00342 Phosphoglucose isomerase DO83_06310 PF00381 PTS HPr component phosphorylation site DO83_06315 PF14527 WhiA LAGLIDADG-like domain DO83_06315 PF10298 WhiA N-terminal LAGLIDADG-like domain DO83_06315 PF02650 WhiA C-terminal HTH domain DO83_06320 PF03668 P-loop ATPase protein family DO83_06325 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain DO83_06325 PF01565 FAD binding domain DO83_06330 PF00480 ROK family DO83_06335 PF07475 HPr Serine kinase C-terminal domain DO83_06335 PF02603 HPr Serine kinase N terminus DO83_06340 PF08459 UvrC Helix-hairpin-helix N-terminal DO83_06340 PF01541 GIY-YIG catalytic domain DO83_06340 PF02151 UvrB/uvrC motif DO83_06340 PF12826 Helix-hairpin-helix motif DO83_06345 PF04055 Radical SAM superfamily DO83_06350 PF13597 Anaerobic ribonucleoside-triphosphate reductase DO83_06350 PF03477 ATP cone domain DO83_06365 PF03323 Bacillus/Clostridium GerA spore germination protein DO83_06375 PF00664 ABC transporter transmembrane region DO83_06375 PF00005 ABC transporter DO83_06380 PF08021 Siderophore-interacting FAD-binding domain DO83_06380 PF00664 ABC transporter transmembrane region DO83_06380 PF04954 Siderophore-interacting protein DO83_06380 PF00005 ABC transporter DO83_06385 PF12833 Helix-turn-helix domain DO83_06390 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain DO83_06390 PF01522 Polysaccharide deacetylase DO83_06395 PF01979 Amidohydrolase family DO83_06395 PF13382 Adenine deaminase C-terminal domain DO83_06425 PF00392 Bacterial regulatory proteins, gntR family DO83_06425 PF07729 FCD domain DO83_06430 PF00288 GHMP kinases N terminal domain DO83_06430 PF08544 GHMP kinases C terminal DO83_06435 PF01471 Putative peptidoglycan binding domain DO83_06435 PF01510 N-acetylmuramoyl-L-alanine amidase DO83_06435 PF01476 LysM domain DO83_06440 PF06257 Biofilm formation stimulator VEG DO83_06445 PF00375 Sodium:dicarboxylate symporter family DO83_06450 PF00455 DeoR C terminal sensor domain DO83_06450 PF08220 DeoR-like helix-turn-helix domain DO83_06455 PF00248 Aldo/keto reductase family DO83_06460 PF00294 pfkB family carbohydrate kinase DO83_06465 PF01116 Fructose-bisphosphate aldolase class-II DO83_06470 PF00107 Zinc-binding dehydrogenase DO83_06470 PF08240 Alcohol dehydrogenase GroES-like domain DO83_06475 PF00083 Sugar (and other) transporter DO83_06480 PF00834 Ribulose-phosphate 3 epimerase family DO83_06485 PF00107 Zinc-binding dehydrogenase DO83_06485 PF08240 Alcohol dehydrogenase GroES-like domain DO83_06495 PF01434 Peptidase family M41 DO83_06495 PF17862 AAA+ lid domain DO83_06495 PF06480 FtsH Extracellular DO83_06495 PF00004 ATPase family associated with various cellular activities (AAA) DO83_06505 PF00591 Glycosyl transferase family, a/b domain DO83_06505 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain DO83_06505 PF02885 Glycosyl transferase family, helical bundle domain DO83_06515 PF02371 Transposase IS116/IS110/IS902 family DO83_06515 PF01548 Transposase DO83_06520 PF00005 ABC transporter DO83_06520 PF00664 ABC transporter transmembrane region DO83_06525 PF00005 ABC transporter DO83_06525 PF00664 ABC transporter transmembrane region DO83_06535 PF06968 Biotin and Thiamin Synthesis associated domain DO83_06535 PF04055 Radical SAM superfamily DO83_06540 PF10688 Bacterial inner membrane protein DO83_06545 PF01791 DeoC/LacD family aldolase DO83_06555 PF02574 Homocysteine S-methyltransferase DO83_06560 PF01235 Sodium:alanine symporter family DO83_06565 PF13411 MerR HTH family regulatory protein DO83_06570 PF01869 BadF/BadG/BcrA/BcrD ATPase family DO83_06580 PF01554 MatE DO83_06585 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DO83_06585 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DO83_06590 PF03613 PTS system mannose/fructose/sorbose family IID component DO83_06595 PF03609 PTS system sorbose-specific iic component DO83_06600 PF03830 PTS system sorbose subfamily IIB component DO83_06610 PF00874 PRD domain DO83_06610 PF00158 Sigma-54 interaction domain DO83_06615 PF00588 SpoU rRNA Methylase family DO83_06620 PF00155 Aminotransferase class I and II DO83_06625 PF01037 Lrp/AsnC ligand binding domain DO83_06630 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain DO83_06630 PF02769 AIR synthase related protein, C-terminal domain DO83_06630 PF00586 AIR synthase related protein, N-terminal domain DO83_06640 PF07733 Bacterial DNA polymerase III alpha NTPase domain DO83_06640 PF14579 Helix-hairpin-helix motif DO83_06640 PF02811 PHP domain DO83_06640 PF00929 Exonuclease DO83_06640 PF11490 DNA polymerase III polC-type N-terminus II DO83_06640 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DO83_06655 PF00440 Bacterial regulatory proteins, tetR family DO83_06655 PF17934 Tetracyclin repressor-like, C-terminal domain DO83_06670 PF00005 ABC transporter DO83_06675 PF13426 PAS domain DO83_06675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DO83_06675 PF00672 HAMP domain DO83_06675 PF00512 His Kinase A (phospho-acceptor) domain DO83_06680 PF00072 Response regulator receiver domain DO83_06680 PF00486 Transcriptional regulatory protein, C terminal DO83_06685 PF01938 TRAM domain DO83_06685 PF05958 tRNA (Uracil-5-)-methyltransferase DO83_06690 PF01966 HD domain DO83_06690 PF01336 OB-fold nucleic acid binding domain DO83_06695 PF00488 MutS domain V DO83_06695 PF01713 Smr domain DO83_06705 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DO83_06705 PF02378 Phosphotransferase system, EIIC DO83_06705 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DO83_06710 PF00990 Diguanylate cyclase, GGDEF domain DO83_06710 PF17155 Gammaproteobacterial periplasmic sensor domain DO83_06715 PF08546 Ketopantoate reductase PanE/ApbA C terminal DO83_06715 PF02558 Ketopantoate reductase PanE/ApbA DO83_06720 PF02881 SRP54-type protein, helical bundle domain DO83_06720 PF00448 SRP54-type protein, GTPase domain DO83_06725 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DO83_06725 PF02378 Phosphotransferase system, EIIC DO83_06725 PF00367 phosphotransferase system, EIIB DO83_06730 PF01380 SIS domain DO83_06730 PF01418 Helix-turn-helix domain, rpiR family DO83_06735 PF01380 SIS domain DO83_06735 PF01418 Helix-turn-helix domain, rpiR family DO83_06740 PF02378 Phosphotransferase system, EIIC DO83_06740 PF00367 phosphotransferase system, EIIB DO83_06745 PF11975 Family 4 glycosyl hydrolase C-terminal domain DO83_06745 PF02056 Family 4 glycosyl hydrolase DO83_06750 PF00958 GMP synthase C terminal domain DO83_06750 PF02540 NAD synthase DO83_06750 PF00117 Glutamine amidotransferase class-I DO83_06755 PF02772 S-adenosylmethionine synthetase, central domain DO83_06755 PF02773 S-adenosylmethionine synthetase, C-terminal domain DO83_06755 PF00438 S-adenosylmethionine synthetase, N-terminal domain DO83_06765 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DO83_06770 PF01202 Shikimate kinase DO83_06775 PF01613 Flavin reductase like domain DO83_06780 PF01230 HIT domain DO83_06785 PF02132 RecR protein DO83_06785 PF13662 Toprim domain DO83_06790 PF02575 YbaB/EbfC DNA-binding family DO83_06795 PF12169 DNA polymerase III subunits gamma and tau domain III DO83_06800 PF00989 PAS fold DO83_06800 PF17203 Single cache domain 3 DO83_06800 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain DO83_06800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DO83_06805 PF01694 Rhomboid family DO83_06840 PF00437 Type II/IV secretion system protein DO83_06860 PF06207 Protein of unknown function (DUF1002) DO83_06870 PF00535 Glycosyl transferase family 2 DO83_06875 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DO83_06875 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DO83_06880 PF01554 MatE DO83_06900 PF00005 ABC transporter DO83_06905 PF00392 Bacterial regulatory proteins, gntR family DO83_06920 PF09424 Yqey-like protein DO83_06930 PF00152 tRNA synthetases class II (D, K and N) DO83_06940 PF00230 Major intrinsic protein DO83_06945 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DO83_06945 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DO83_06950 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DO83_06950 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DO83_06960 PF07992 Pyridine nucleotide-disulphide oxidoreductase DO83_06960 PF04324 BFD-like [2Fe-2S] binding domain DO83_06965 PF01266 FAD dependent oxidoreductase DO83_06970 PF00356 Bacterial regulatory proteins, lacI family DO83_06975 PF00381 PTS HPr component phosphorylation site DO83_06975 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DO83_06980 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DO83_06980 PF02378 Phosphotransferase system, EIIC DO83_06985 PF01232 Mannitol dehydrogenase Rossmann domain DO83_06985 PF08125 Mannitol dehydrogenase C-terminal domain DO83_06990 PF08279 HTH domain DO83_06990 PF05043 Mga helix-turn-helix domain DO83_06990 PF00874 PRD domain DO83_06990 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DO83_06990 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DO83_07055 PF06866 Protein of unknown function (DUF1256) DO83_07075 PF00692 dUTPase DO83_07080 PF01522 Polysaccharide deacetylase DO83_07090 PF01048 Phosphorylase superfamily DO83_07100 PF04101 Glycosyltransferase family 28 C-terminal domain DO83_07100 PF03033 Glycosyltransferase family 28 N-terminal domain DO83_07115 PF12801 4Fe-4S binding domain DO83_07155 PF00294 pfkB family carbohydrate kinase DO83_07160 PF00455 DeoR C terminal sensor domain DO83_07160 PF08220 DeoR-like helix-turn-helix domain DO83_07170 PF00005 ABC transporter DO83_07175 PF07883 Cupin domain DO83_07180 PF02811 PHP domain DO83_07185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DO83_07190 PF00486 Transcriptional regulatory protein, C terminal DO83_07190 PF00072 Response regulator receiver domain DO83_07195 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DO83_07195 PF02403 Seryl-tRNA synthetase N-terminal domain DO83_07205 PF02195 ParB-like nuclease domain DO83_07205 PF17762 HTH domain found in ParB protein DO83_07210 PF13614 AAA domain DO83_07215 PF05746 DALR anticodon binding domain DO83_07215 PF00750 tRNA synthetases class I (R) DO83_07215 PF03485 Arginyl tRNA synthetase N terminal domain DO83_07225 PF02527 rRNA small subunit methyltransferase G DO83_07230 PF13932 GidA associated domain DO83_07230 PF01134 Glucose inhibited division protein A DO83_07235 PF10396 GTP-binding protein TrmE N-terminus DO83_07235 PF12631 MnmE helical domain DO83_07235 PF01926 50S ribosome-binding GTPase DO83_07245 PF02096 60Kd inner membrane protein DO83_07250 PF01809 Putative membrane protein insertion efficiency factor DO83_07255 PF00825 Ribonuclease P DO83_07260 PF00468 Ribosomal protein L34 DO83_07265 PF11638 DnaA N-terminal domain DO83_07265 PF08299 Bacterial dnaA protein helix-turn-helix DO83_07265 PF00308 Bacterial dnaA protein DO83_07270 PF02768 DNA polymerase III beta subunit, C-terminal domain DO83_07270 PF02767 DNA polymerase III beta subunit, central domain DO83_07270 PF00712 DNA polymerase III beta subunit, N-terminal domain DO83_07280 PF02463 RecF/RecN/SMC N terminal domain DO83_07285 PF00986 DNA gyrase B subunit, carboxyl terminus DO83_07285 PF01751 Toprim domain DO83_07285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DO83_07285 PF00204 DNA gyrase B DO83_07290 PF00521 DNA gyrase/topoisomerase IV, subunit A DO83_07290 PF03989 DNA gyrase C-terminal domain, beta-propeller DO83_07295 PF05681 Fumarate hydratase (Fumerase) DO83_07355 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain DO83_07355 PF01276 Orn/Lys/Arg decarboxylase, major domain DO83_07360 PF02223 Thymidylate kinase DO83_07365 PF09115 DNA polymerase III, delta subunit, C terminal DO83_07370 PF04468 PSP1 C-terminal conserved region DO83_07375 PF05175 Methyltransferase small domain DO83_07380 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DO83_07385 PF18277 AbrB C-terminal domain DO83_07385 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin DO83_07390 PF01588 Putative tRNA binding domain DO83_07390 PF09334 tRNA synthetases class I (M) DO83_07400 PF01293 Phosphoenolpyruvate carboxykinase DO83_07405 PF01047 MarR family DO83_07425 PF00266 Aminotransferase class-V DO83_07430 PF01740 STAS domain DO83_07430 PF00916 Sulfate permease family DO83_07440 PF07670 Nucleoside recognition DO83_07455 PF01026 TatD related DNase DO83_07460 PF00398 Ribosomal RNA adenine dimethylase DO83_07470 PF14437 MafB19-like deaminase DO83_07480 PF04607 Region found in RelA / SpoT proteins DO83_07495 PF00912 Transglycosylase DO83_07495 PF00905 Penicillin binding protein transpeptidase domain DO83_07500 PF14572 Phosphoribosyl synthetase-associated domain DO83_07500 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DO83_07515 PF01225 Mur ligase family, catalytic domain DO83_07515 PF02875 Mur ligase family, glutamate ligase domain DO83_07515 PF08245 Mur ligase middle domain DO83_07520 PF04026 SpoVG DO83_07530 PF01250 Ribosomal protein S6 DO83_07535 PF00436 Single-strand binding protein family DO83_07540 PF01084 Ribosomal protein S18 DO83_07550 PF03948 Ribosomal protein L9, C-terminal domain DO83_07550 PF01281 Ribosomal protein L9, N-terminal domain DO83_07555 PF03796 DnaB-like helicase C terminal domain DO83_07555 PF00772 DnaB-like helicase N terminal domain DO83_07560 PF00156 Phosphoribosyl transferase domain DO83_07565 PF00730 HhH-GPD superfamily base excision DNA repair protein DO83_07565 PF14815 NUDIX domain DO83_07570 PF00497 Bacterial extracellular solute-binding proteins, family 3 DO83_07575 PF00528 Binding-protein-dependent transport system inner membrane component DO83_07580 PF00005 ABC transporter DO83_07590 PF00497 Bacterial extracellular solute-binding proteins, family 3 DO83_07630 PF02874 ATP synthase alpha/beta family, beta-barrel domain DO83_07630 PF16886 ATPsynthase alpha/beta subunit N-term extension DO83_07630 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DO83_07635 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DO83_07635 PF02874 ATP synthase alpha/beta family, beta-barrel domain DO83_07640 PF01813 ATP synthase subunit D DO83_07645 PF01116 Fructose-bisphosphate aldolase class-II DO83_07650 PF01418 Helix-turn-helix domain, rpiR family DO83_07650 PF01380 SIS domain DO83_07655 PF00294 pfkB family carbohydrate kinase DO83_07660 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DO83_07660 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DO83_07665 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DO83_07665 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DO83_07685 PF00654 Voltage gated chloride channel DO83_07690 PF00293 NUDIX domain DO83_07705 PF03616 Sodium/glutamate symporter DO83_07715 PF13411 MerR HTH family regulatory protein DO83_07720 PF13292 1-deoxy-D-xylulose-5-phosphate synthase DO83_07720 PF02780 Transketolase, C-terminal domain DO83_07720 PF02779 Transketolase, pyrimidine binding domain DO83_07725 PF00365 Phosphofructokinase DO83_07730 PF13936 Helix-turn-helix domain DO83_07730 PF04198 Putative sugar-binding domain DO83_07735 PF08240 Alcohol dehydrogenase GroES-like domain DO83_07735 PF00107 Zinc-binding dehydrogenase DO83_07740 PF01116 Fructose-bisphosphate aldolase class-II DO83_07745 PF08264 Anticodon-binding domain of tRNA DO83_07745 PF00133 tRNA synthetases class I (I, L, M and V) DO83_07760 PF00069 Protein kinase domain DO83_07785 PF00224 Pyruvate kinase, barrel domain DO83_07785 PF02887 Pyruvate kinase, alpha/beta domain DO83_07785 PF00391 PEP-utilising enzyme, mobile domain DO83_07790 PF16657 Maltogenic Amylase, C-terminal domain DO83_07790 PF00128 Alpha amylase, catalytic domain DO83_07800 PF01209 ubiE/COQ5 methyltransferase family DO83_07810 PF13350 Tyrosine phosphatase family DO83_07835 PF00004 ATPase family associated with various cellular activities (AAA) DO83_07835 PF17862 AAA+ lid domain DO83_07835 PF01434 Peptidase family M41 DO83_07835 PF06480 FtsH Extracellular DO83_07840 PF01554 MatE DO83_07915 PF00899 ThiF family DO83_07920 PF03591 AzlC protein DO83_07925 PF05437 Branched-chain amino acid transport protein (AzlD) DO83_07930 PF01053 Cys/Met metabolism PLP-dependent enzyme DO83_07940 PF00291 Pyridoxal-phosphate dependent enzyme DO83_07945 PF00899 ThiF family DO83_07955 PF02378 Phosphotransferase system, EIIC DO83_07955 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DO83_07955 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DO83_07960 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DO83_07965 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DO83_07970 PF01116 Fructose-bisphosphate aldolase class-II DO83_07975 PF01116 Fructose-bisphosphate aldolase class-II DO83_07980 PF00480 ROK family DO83_07985 PF01380 SIS domain DO83_07985 PF01418 Helix-turn-helix domain, rpiR family DO83_07990 PF01380 SIS domain DO83_07990 PF01418 Helix-turn-helix domain, rpiR family DO83_07995 PF02056 Family 4 glycosyl hydrolase DO83_07995 PF11975 Family 4 glycosyl hydrolase C-terminal domain DO83_08000 PF02056 Family 4 glycosyl hydrolase DO83_08000 PF11975 Family 4 glycosyl hydrolase C-terminal domain DO83_08005 PF01263 Aldose 1-epimerase DO83_08010 PF00367 phosphotransferase system, EIIB DO83_08010 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DO83_08010 PF02378 Phosphotransferase system, EIIC DO83_08025 PF00072 Response regulator receiver domain DO83_08025 PF00486 Transcriptional regulatory protein, C terminal DO83_08030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DO83_08030 PF00512 His Kinase A (phospho-acceptor) domain DO83_08040 PF00877 NlpC/P60 family DO83_08040 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain DO83_08065 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DO83_08065 PF02142 MGS-like domain DO83_08065 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DO83_08075 PF13419 Haloacid dehalogenase-like hydrolase DO83_08090 PF01554 MatE DO83_08100 PF00633 Helix-hairpin-helix motif DO83_08100 PF00730 HhH-GPD superfamily base excision DNA repair protein DO83_08115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DO83_08115 PF03466 LysR substrate binding domain DO83_08125 PF00482 Type II secretion system (T2SS), protein F DO83_08150 PF00437 Type II/IV secretion system protein DO83_08165 PF01799 [2Fe-2S] binding domain DO83_08165 PF00111 2Fe-2S iron-sulfur cluster binding domain DO83_08170 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DO83_08170 PF01799 [2Fe-2S] binding domain DO83_08170 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase DO83_08180 PF00156 Phosphoribosyl transferase domain DO83_08185 PF00793 DAHP synthetase I family DO83_08185 PF18152 DAHP synthase ferredoxin-like domain DO83_08190 PF01195 Peptidyl-tRNA hydrolase DO83_08195 PF17757 UvrB interaction domain DO83_08195 PF03461 TRCF domain DO83_08195 PF00271 Helicase conserved C-terminal domain DO83_08195 PF02559 CarD-like/TRCF domain DO83_08195 PF00270 DEAD/DEAH box helicase DO83_08210 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DO83_08210 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DO83_08215 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DO83_08230 PF03611 PTS system sugar-specific permease component DO83_08235 PF13685 Iron-containing alcohol dehydrogenase DO83_08240 PF00596 Class II Aldolase and Adducin N-terminal domain DO83_08245 PF13344 Haloacid dehalogenase-like hydrolase DO83_08250 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DO83_08250 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DO83_08250 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DO83_08250 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DO83_08265 PF07702 UTRA domain DO83_08265 PF00392 Bacterial regulatory proteins, gntR family DO83_08285 PF01232 Mannitol dehydrogenase Rossmann domain DO83_08285 PF08125 Mannitol dehydrogenase C-terminal domain DO83_08290 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DO83_08290 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DO83_08325 PF00248 Aldo/keto reductase family DO83_08330 PF04073 Aminoacyl-tRNA editing domain DO83_08340 PF01548 Transposase DO83_08340 PF02371 Transposase IS116/IS110/IS902 family DO83_08345 PF00375 Sodium:dicarboxylate symporter family DO83_08360 PF02386 Cation transport protein DO83_08365 PF02080 TrkA-C domain DO83_08365 PF02254 TrkA-N domain DO83_08370 PF02702 Osmosensitive K+ channel His kinase sensor domain DO83_08370 PF13493 Domain of unknown function (DUF4118) DO83_08370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DO83_08370 PF00512 His Kinase A (phospho-acceptor) domain DO83_08375 PF00486 Transcriptional regulatory protein, C terminal DO83_08375 PF00072 Response regulator receiver domain DO83_08380 PF03313 Serine dehydratase alpha chain DO83_08385 PF03315 Serine dehydratase beta chain DO83_08390 PF00375 Sodium:dicarboxylate symporter family DO83_08395 PF03466 LysR substrate binding domain DO83_08395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DO83_08420 PF00684 DnaJ central domain DO83_08420 PF01556 DnaJ C terminal domain DO83_08420 PF00226 DnaJ domain DO83_08430 PF00465 Iron-containing alcohol dehydrogenase DO83_08435 PF05043 Mga helix-turn-helix domain DO83_08435 PF00874 PRD domain DO83_08435 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DO83_08435 PF08279 HTH domain DO83_08440 PF02126 Phosphotriesterase family DO83_08455 PF03611 PTS system sugar-specific permease component DO83_08460 PF13378 Enolase C-terminal domain-like DO83_08460 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DO83_08465 PF01081 KDPG and KHG aldolase DO83_08470 PF01554 MatE DO83_08475 PF03129 Anticodon binding domain DO83_08475 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DO83_08475 PF09180 Prolyl-tRNA synthetase, C-terminal DO83_08480 PF01743 Poly A polymerase head domain DO83_08480 PF13735 tRNA nucleotidyltransferase domain 2 putative DO83_08480 PF12627 Probable RNA and SrmB- binding site of polymerase A DO83_08485 PF03009 Glycerophosphoryl diester phosphodiesterase family DO83_08495 PF01177 Asp/Glu/Hydantoin racemase DO83_08505 PF13493 Domain of unknown function (DUF4118) DO83_08505 PF02702 Osmosensitive K+ channel His kinase sensor domain DO83_08505 PF00512 His Kinase A (phospho-acceptor) domain DO83_08505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DO83_08510 PF00486 Transcriptional regulatory protein, C terminal DO83_08510 PF00072 Response regulator receiver domain DO83_08515 PF00909 Ammonium Transporter Family DO83_08520 PF00909 Ammonium Transporter Family DO83_08525 PF00543 Nitrogen regulatory protein P-II DO83_08550 PF01116 Fructose-bisphosphate aldolase class-II DO83_08565 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DO83_08565 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DO83_08570 PF01842 ACT domain DO83_08570 PF03315 Serine dehydratase beta chain DO83_08575 PF03313 Serine dehydratase alpha chain DO83_08580 PF03932 CutC family DO83_08585 PF01758 Sodium Bile acid symporter family DO83_08590 PF09297 NADH pyrophosphatase zinc ribbon domain DO83_08590 PF00293 NUDIX domain DO83_08595 PF00535 Glycosyl transferase family 2 DO83_08600 PF09586 Bacterial membrane protein YfhO DO83_08610 PF11924 Inverse autotransporter, beta-domain DO83_08610 PF02368 Bacterial Ig-like domain (group 2) DO83_08610 PF07979 Intimin C-type lectin domain DO83_08610 PF01476 LysM domain DO83_08610 PF02369 Bacterial Ig-like domain (group 1) DO83_08630 PF00072 Response regulator receiver domain DO83_08630 PF04397 LytTr DNA-binding domain DO83_08660 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DO83_08665 PF02618 YceG-like family DO83_08670 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DO83_08670 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg DO83_08670 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase DO83_08670 PF10371 Domain of unknown function DO83_08670 PF12838 4Fe-4S dicluster domain DO83_08670 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II DO83_08675 PF00152 tRNA synthetases class II (D, K and N) DO83_08675 PF02938 GAD domain DO83_08675 PF01336 OB-fold nucleic acid binding domain DO83_08680 PF04963 Sigma-54 factor, core binding domain DO83_08680 PF00309 Sigma-54 factor, Activator interacting domain (AID) DO83_08680 PF04552 Sigma-54, DNA binding domain DO83_08685 PF03610 PTS system fructose IIA component DO83_08690 PF00158 Sigma-54 interaction domain DO83_08690 PF00874 PRD domain DO83_08690 PF03610 PTS system fructose IIA component DO83_08695 PF01116 Fructose-bisphosphate aldolase class-II DO83_08705 PF00107 Zinc-binding dehydrogenase DO83_08705 PF08240 Alcohol dehydrogenase GroES-like domain DO83_08710 PF03830 PTS system sorbose subfamily IIB component DO83_08715 PF03609 PTS system sorbose-specific iic component DO83_08720 PF03613 PTS system mannose/fructose/sorbose family IID component DO83_08725 PF01232 Mannitol dehydrogenase Rossmann domain DO83_08725 PF08125 Mannitol dehydrogenase C-terminal domain DO83_08730 PF00248 Aldo/keto reductase family DO83_08735 PF00665 Integrase core domain DO83_08735 PF13333 Integrase core domain DO83_08760 PF00392 Bacterial regulatory proteins, gntR family DO83_08765 PF00005 ABC transporter DO83_08780 PF02690 Na+/Pi-cotransporter DO83_08785 PF00834 Ribulose-phosphate 3 epimerase family DO83_08790 PF10609 NUBPL iron-transfer P-loop NTPase DO83_08810 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DO83_08810 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DO83_08820 PF00301 Rubredoxin DO83_08830 PF02915 Rubrerythrin DO83_08835 PF00270 DEAD/DEAH box helicase DO83_08835 PF13749 Putative ATP-dependent DNA helicase recG C-terminal DO83_08835 PF17191 RecG wedge domain DO83_08840 PF02445 Quinolinate synthetase A protein DO83_08845 PF00890 FAD binding domain DO83_08850 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain DO83_08850 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain DO83_08855 PF07228 Stage II sporulation protein E (SpoIIE) DO83_08860 PF01171 PP-loop family DO83_08860 PF11734 TilS substrate C-terminal domain DO83_08865 PF00156 Phosphoribosyl transferase domain DO83_08870 PF01434 Peptidase family M41 DO83_08870 PF06480 FtsH Extracellular DO83_08870 PF00004 ATPase family associated with various cellular activities (AAA) DO83_08870 PF17862 AAA+ lid domain DO83_08900 PF00005 ABC transporter DO83_08905 PF00550 Phosphopantetheine attachment site DO83_08910 PF00698 Acyl transferase domain DO83_08920 PF00109 Beta-ketoacyl synthase, N-terminal domain DO83_08920 PF02801 Beta-ketoacyl synthase, C-terminal domain DO83_08925 PF00364 Biotin-requiring enzyme DO83_08930 PF07977 FabA-like domain DO83_08935 PF00289 Biotin carboxylase, N-terminal domain DO83_08935 PF02785 Biotin carboxylase C-terminal domain DO83_08935 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DO83_08940 PF01039 Carboxyl transferase domain DO83_08940 PF17848 Acetyl-coA carboxylase zinc finger domain DO83_08945 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DO83_08955 PF00338 Ribosomal protein S10p/S20e DO83_08960 PF00297 Ribosomal protein L3 DO83_08965 PF00573 Ribosomal protein L4/L1 family DO83_08970 PF00276 Ribosomal protein L23 DO83_08975 PF03947 Ribosomal Proteins L2, C-terminal domain DO83_08975 PF00181 Ribosomal Proteins L2, RNA binding domain DO83_08980 PF00203 Ribosomal protein S19 DO83_08985 PF00237 Ribosomal protein L22p/L17e DO83_08990 PF07650 KH domain DO83_08990 PF00189 Ribosomal protein S3, C-terminal domain DO83_08995 PF00252 Ribosomal protein L16p/L10e DO83_09000 PF00831 Ribosomal L29 protein DO83_09005 PF00366 Ribosomal protein S17 DO83_09010 PF00238 Ribosomal protein L14p/L23e DO83_09015 PF00467 KOW motif DO83_09015 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 DO83_09020 PF00673 ribosomal L5P family C-terminus DO83_09020 PF00281 Ribosomal protein L5 DO83_09025 PF00253 Ribosomal protein S14p/S29e DO83_09030 PF00410 Ribosomal protein S8 DO83_09035 PF00347 Ribosomal protein L6 DO83_09040 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast DO83_09045 PF00333 Ribosomal protein S5, N-terminal domain DO83_09045 PF03719 Ribosomal protein S5, C-terminal domain DO83_09050 PF00327 Ribosomal protein L30p/L7e DO83_09055 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DO83_09060 PF00344 SecY translocase DO83_09065 PF05191 Adenylate kinase, active site lid DO83_09070 PF00557 Metallopeptidase family M24 DO83_09075 PF01176 Translation initiation factor 1A / IF-1 DO83_09080 PF00444 Ribosomal protein L36 DO83_09085 PF00416 Ribosomal protein S13/S18 DO83_09090 PF00411 Ribosomal protein S11 DO83_09095 PF01479 S4 domain DO83_09095 PF00163 Ribosomal protein S4/S9 N-terminal domain DO83_09105 PF01196 Ribosomal protein L17 DO83_09110 PF00005 ABC transporter DO83_09115 PF00005 ABC transporter DO83_09120 PF02361 Cobalt transport protein DO83_09125 PF01416 tRNA pseudouridine synthase DO83_09135 PF00572 Ribosomal protein L13 DO83_09140 PF00380 Ribosomal protein S9/S16 DO83_09150 PF03952 Enolase, N-terminal domain DO83_09150 PF00113 Enolase, C-terminal TIM barrel domain DO83_09165 PF01717 Cobalamin-independent synthase, Catalytic domain DO83_09175 PF00753 Metallo-beta-lactamase superfamily DO83_09175 PF00258 Flavodoxin DO83_09180 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DO83_09185 PF04055 Radical SAM superfamily DO83_09195 PF00302 Chloramphenicol acetyltransferase DO83_09205 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DO83_09205 PF02806 Alpha amylase, C-terminal all-beta domain DO83_09205 PF00128 Alpha amylase, catalytic domain DO83_09210 PF07992 Pyridine nucleotide-disulphide oxidoreductase DO83_09215 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DO83_09215 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus DO83_09220 PF07517 SecA DEAD-like domain DO83_09220 PF07516 SecA Wing and Scaffold domain DO83_09220 PF01043 SecA preprotein cross-linking domain DO83_09220 PF02810 SEC-C motif DO83_09225 PF00472 RF-1 domain DO83_09225 PF03462 PCRF domain DO83_09235 PF01676 Metalloenzyme superfamily DO83_09235 PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase DO83_09240 PF13840 ACT domain DO83_09240 PF00696 Amino acid kinase family DO83_09245 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DO83_09250 PF16921 Tex protein YqgF-like domain DO83_09250 PF00575 S1 RNA binding domain DO83_09250 PF09371 Tex-like protein N-terminal domain DO83_09250 PF17674 HHH domain DO83_09265 PF17853 GGDEF-like domain DO83_09265 PF05651 Putative sugar diacid recognition DO83_09265 PF13556 PucR C-terminal helix-turn-helix domain DO83_09270 PF00005 ABC transporter DO83_09275 PF02687 FtsX-like permease family DO83_09275 PF18075 FtsX extracellular domain DO83_09285 PF00595 PDZ domain DO83_09285 PF03572 Peptidase family S41 DO83_09290 PF00266 Aminotransferase class-V DO83_09300 PF00589 Phage integrase family DO83_09300 PF02920 DNA binding domain of tn916 integrase DO83_09305 PF09035 Excisionase from transposon Tn916 DO83_09345 PF06308 23S rRNA methylastransferase leader peptide (ErmCL) DO83_09350 PF00398 Ribosomal RNA adenine dimethylase DO83_09370 PF00877 NlpC/P60 family DO83_09415 PF18106 Rolling Circle replication initiation protein N-terminal domain DO83_09415 PF02486 Replication initiation factor DO83_09460 PF00271 Helicase conserved C-terminal domain DO83_09460 PF04851 Type III restriction enzyme, res subunit DO83_09460 PF12344 Ultra-violet resistance protein B DO83_09460 PF02151 UvrB/uvrC motif DO83_09460 PF17757 UvrB interaction domain DO83_09465 PF17755 UvrA DNA-binding domain DO83_09465 PF17760 UvrA interaction domain DO83_09470 PF00455 DeoR C terminal sensor domain DO83_09470 PF08220 DeoR-like helix-turn-helix domain DO83_09480 PF13187 4Fe-4S dicluster domain DO83_09480 PF04055 Radical SAM superfamily DO83_09485 PF15714 Stage V sporulation protein T C-terminal, transcription factor DO83_09485 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin DO83_09495 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE DO83_09500 PF00814 Glycoprotease family DO83_09505 PF00583 Acetyltransferase (GNAT) family DO83_09510 PF00753 Metallo-beta-lactamase superfamily DO83_09515 PF00814 Glycoprotease family DO83_09520 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DO83_09600 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain DO83_09600 PF00877 NlpC/P60 family DO83_09610 PF01116 Fructose-bisphosphate aldolase class-II DO83_09615 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DO83_09615 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DO83_09615 PF02378 Phosphotransferase system, EIIC DO83_09620 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DO83_09625 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DO83_09625 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DO83_09635 PF13419 Haloacid dehalogenase-like hydrolase DO83_09640 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DO83_09645 PF02502 Ribose/Galactose Isomerase DO83_09650 PF01261 Xylose isomerase-like TIM barrel DO83_09655 PF02733 Dak1 domain DO83_09660 PF02734 DAK2 domain DO83_09670 PF00005 ABC transporter DO83_09705 PF00107 Zinc-binding dehydrogenase DO83_09705 PF08240 Alcohol dehydrogenase GroES-like domain DO83_09710 PF00403 Heavy-metal-associated domain DO83_09715 PF01022 Bacterial regulatory protein, arsR family DO83_09720 PF03447 Homoserine dehydrogenase, NAD binding domain DO83_09720 PF00742 Homoserine dehydrogenase DO83_09720 PF01842 ACT domain DO83_09725 PF17922 Tetracyclin repressor-like, C-terminal domain DO83_09725 PF00440 Bacterial regulatory proteins, tetR family DO83_09760 PF02885 Glycosyl transferase family, helical bundle domain DO83_09760 PF00591 Glycosyl transferase family, a/b domain DO83_09760 PF00117 Glutamine amidotransferase class-I DO83_09765 PF00218 Indole-3-glycerol phosphate synthase DO83_09770 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase DO83_09775 PF00291 Pyridoxal-phosphate dependent enzyme DO83_09780 PF00290 Tryptophan synthase alpha chain DO83_09785 PF00155 Aminotransferase class I and II DO83_09790 PF00155 Aminotransferase class I and II DO83_09800 PF01594 AI-2E family transporter DO83_09805 PF00303 Thymidylate synthase DO83_09810 PF00186 Dihydrofolate reductase DO83_09825 PF01381 Helix-turn-helix DO83_09850 PF01510 N-acetylmuramoyl-L-alanine amidase DO83_09850 PF01471 Putative peptidoglycan binding domain DO83_09855 PF07508 Recombinase DO83_09855 PF13408 Recombinase zinc beta ribbon domain DO83_09855 PF00239 Resolvase, N terminal domain DO83_09865 PF14579 Helix-hairpin-helix motif DO83_09865 PF00929 Exonuclease DO83_09865 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DO83_09865 PF07733 Bacterial DNA polymerase III alpha NTPase domain DO83_09865 PF11490 DNA polymerase III polC-type N-terminus II DO83_09865 PF02811 PHP domain DO83_09865 PF01336 OB-fold nucleic acid binding domain DO83_09865 PF14480 DNA polymerase III polC-type N-terminus I DO83_10010 PF00574 Clp protease DO83_10070 PF01476 LysM domain DO83_10070 PF00877 NlpC/P60 family DO83_10085 PF04865 Baseplate J-like protein DO83_10150 PF04073 Aminoacyl-tRNA editing domain DO83_10155 PF00484 Carbonic anhydrase DO83_10190 PF00005 ABC transporter DO83_10205 PF00128 Alpha amylase, catalytic domain DO83_10205 PF02903 Alpha amylase, N-terminal ig-like domain DO83_10205 PF16657 Maltogenic Amylase, C-terminal domain DO83_10210 PF00013 KH domain DO83_10210 PF01966 HD domain DO83_10210 PF12072 Domain of unknown function (DUF3552) DO83_10215 PF00293 NUDIX domain DO83_10225 PF00793 DAHP synthetase I family DO83_10230 PF12822 ECF transporter, substrate-specific component DO83_10240 PF00300 Histidine phosphatase superfamily (branch 1) DO83_10250 PF07687 Peptidase dimerisation domain DO83_10250 PF01546 Peptidase family M20/M25/M40 DO83_10255 PF00291 Pyridoxal-phosphate dependent enzyme DO83_10255 PF14821 Threonine synthase N terminus DO83_10275 PF00069 Protein kinase domain DO83_10275 PF03793 PASTA domain DO83_10285 PF00575 S1 RNA binding domain DO83_10290 PF01264 Chorismate synthase DO83_10295 PF01702 Queuine tRNA-ribosyltransferase DO83_10305 PF02811 PHP domain DO83_10320 PF04055 Radical SAM superfamily DO83_10325 PF07549 SecD/SecF GG Motif DO83_10325 PF02355 Protein export membrane protein DO83_10330 PF10141 Single-strand DNA-specific exonuclease, C terminal domain DO83_10330 PF17768 RecJ OB domain DO83_10330 PF02272 DHHA1 domain DO83_10330 PF01368 DHH family DO83_10380 PF02542 YgbB family DO83_10390 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain DO83_10390 PF10996 Beta-Casp domain DO83_10390 PF00753 Metallo-beta-lactamase superfamily DO83_10395 PF00849 RNA pseudouridylate synthase DO83_10395 PF01479 S4 domain DO83_10405 PF04204 Homoserine O-succinyltransferase DO83_10415 PF08245 Mur ligase middle domain DO83_10415 PF02875 Mur ligase family, glutamate ligase domain DO83_10425 PF01740 STAS domain DO83_10430 PF13581 Histidine kinase-like ATPase domain DO83_10435 PF04545 Sigma-70, region 4 DO83_10435 PF04542 Sigma-70 region 2 DO83_10435 PF04539 Sigma-70 region 3 DO83_10440 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DO83_10440 PF07498 Rho termination factor, N-terminal domain DO83_10440 PF07497 Rho termination factor, RNA-binding domain DO83_10445 PF01197 Ribosomal protein L31 DO83_10450 PF07136 Protein of unknown function (DUF1385) DO83_10455 PF05175 Methyltransferase small domain DO83_10455 PF17827 PrmC N-terminal domain DO83_10460 PF03462 PCRF domain DO83_10460 PF00472 RF-1 domain DO83_10465 PF00795 Carbon-nitrogen hydrolase DO83_10465 PF02540 NAD synthase DO83_10470 PF13407 Periplasmic binding protein domain DO83_10475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DO83_10475 PF07730 Histidine kinase DO83_10480 PF00072 Response regulator receiver domain DO83_10480 PF00196 Bacterial regulatory proteins, luxR family DO83_10505 PF03613 PTS system mannose/fructose/sorbose family IID component DO83_10515 PF02368 Bacterial Ig-like domain (group 2) DO83_10515 PF08244 Glycosyl hydrolases family 32 C terminal DO83_10515 PF00251 Glycosyl hydrolases family 32 N-terminal domain DO83_10515 PF02210 Laminin G domain DO83_10545 PF00072 Response regulator receiver domain DO83_10545 PF00486 Transcriptional regulatory protein, C terminal DO83_10550 PF00512 His Kinase A (phospho-acceptor) domain DO83_10550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DO83_10555 PF01915 Glycosyl hydrolase family 3 C-terminal domain DO83_10555 PF00933 Glycosyl hydrolase family 3 N terminal domain DO83_10560 PF13537 Glutamine amidotransferase domain DO83_10560 PF00156 Phosphoribosyl transferase domain DO83_10565 PF10397 Adenylosuccinate lyase C-terminus DO83_10565 PF00206 Lyase DO83_10585 PF00990 Diguanylate cyclase, GGDEF domain DO83_10585 PF17151 Periplasmic sensor domain DO83_10600 PF16199 Radical_SAM C-terminal domain DO83_10600 PF04055 Radical SAM superfamily DO83_10605 PF01263 Aldose 1-epimerase DO83_10610 PF03144 Elongation factor Tu domain 2 DO83_10610 PF16658 Class II release factor RF3, C-terminal domain DO83_10610 PF00009 Elongation factor Tu GTP binding domain DO83_10620 PF02706 Chain length determinant protein DO83_10625 PF13614 AAA domain DO83_10640 PF00707 Translation initiation factor IF-3, C-terminal domain DO83_10640 PF05198 Translation initiation factor IF-3, N-terminal domain DO83_10645 PF01632 Ribosomal protein L35 DO83_10650 PF00453 Ribosomal protein L20 DO83_10660 PF04397 LytTr DNA-binding domain DO83_10660 PF00072 Response regulator receiver domain DO83_10665 PF01048 Phosphorylase superfamily DO83_10670 PF01979 Amidohydrolase family DO83_10695 PF01261 Xylose isomerase-like TIM barrel DO83_10700 PF12706 Beta-lactamase superfamily domain DO83_10710 PF03419 Sporulation factor SpoIIGA DO83_10715 PF04542 Sigma-70 region 2 DO83_10715 PF04545 Sigma-70, region 4 DO83_10725 PF08367 Peptidase M16C associated DO83_10725 PF00675 Insulinase (Peptidase family M16) DO83_10725 PF05193 Peptidase M16 inactive domain DO83_10730 PF01926 50S ribosome-binding GTPase DO83_10730 PF07650 KH domain DO83_10745 PF03129 Anticodon binding domain DO83_10745 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DO83_10750 PF13090 Polyphosphate kinase C-terminal domain 2 DO83_10750 PF13089 Polyphosphate kinase N-terminal domain DO83_10750 PF02503 Polyphosphate kinase middle domain DO83_10750 PF17941 Polyphosphate kinase C-terminal domain 1 DO83_10775 PF12849 PBP superfamily domain DO83_10780 PF00528 Binding-protein-dependent transport system inner membrane component DO83_10785 PF00528 Binding-protein-dependent transport system inner membrane component DO83_10790 PF00005 ABC transporter DO83_10795 PF01895 PhoU domain DO83_10800 PF00072 Response regulator receiver domain DO83_10800 PF00486 Transcriptional regulatory protein, C terminal DO83_10805 PF16736 Single Cache-like DO83_10805 PF00989 PAS fold DO83_10805 PF00512 His Kinase A (phospho-acceptor) domain DO83_10805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DO83_10810 PF08239 Bacterial SH3 domain DO83_10810 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DO83_10810 PF05036 Sporulation related domain DO83_10815 PF00497 Bacterial extracellular solute-binding proteins, family 3 DO83_10820 PF00528 Binding-protein-dependent transport system inner membrane component DO83_10830 PF00285 Citrate synthase, C-terminal domain DO83_10840 PF00149 Calcineurin-like phosphoesterase DO83_10870 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DO83_10870 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DO83_10875 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DO83_10880 PF03611 PTS system sugar-specific permease component DO83_10885 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DO83_10890 PF01261 Xylose isomerase-like TIM barrel DO83_10900 PF00596 Class II Aldolase and Adducin N-terminal domain DO83_10915 PF04198 Putative sugar-binding domain DO83_10930 PF00512 His Kinase A (phospho-acceptor) domain DO83_10930 PF01627 Hpt domain DO83_10930 PF00072 Response regulator receiver domain DO83_10930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DO83_10935 PF00072 Response regulator receiver domain DO83_10940 PF01566 Natural resistance-associated macrophage protein DO83_10945 PF02682 Carboxyltransferase domain, subdomain C and D DO83_10950 PF02626 Carboxyltransferase domain, subdomain A and B DO83_10955 PF00364 Biotin-requiring enzyme DO83_10960 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DO83_10960 PF02785 Biotin carboxylase C-terminal domain DO83_10960 PF00289 Biotin carboxylase, N-terminal domain DO83_10965 PF03746 LamB/YcsF family DO83_10970 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase DO83_10975 PF02441 Flavoprotein DO83_10980 PF00294 pfkB family carbohydrate kinase DO83_10985 PF10431 C-terminal, D2-small domain, of ClpB protein DO83_10985 PF02861 Clp amino terminal domain, pathogenicity island component DO83_10985 PF17871 AAA lid domain DO83_10985 PF07724 AAA domain (Cdc48 subfamily) DO83_10985 PF00004 ATPase family associated with various cellular activities (AAA) DO83_10995 PF00248 Aldo/keto reductase family DO83_11005 PF00654 Voltage gated chloride channel DO83_11010 PF03167 Uracil DNA glycosylase superfamily DO83_11020 PF00768 D-alanyl-D-alanine carboxypeptidase DO83_11020 PF07943 Penicillin-binding protein 5, C-terminal domain DO83_11025 PF00781 Diacylglycerol kinase catalytic domain DO83_11050 PF02926 THUMP domain DO83_11050 PF01170 Putative RNA methylase family UPF0020 DO83_11055 PF01725 Ham1 family DO83_11060 PF12850 Calcineurin-like phosphoesterase superfamily domain DO83_11065 PF01938 TRAM domain DO83_11065 PF05958 tRNA (Uracil-5-)-methyltransferase DO83_11070 PF08534 Redoxin DO83_11080 PF04205 FMN-binding domain DO83_11080 PF12801 4Fe-4S binding domain DO83_11090 PF00005 ABC transporter DO83_11100 PF00486 Transcriptional regulatory protein, C terminal DO83_11100 PF00072 Response regulator receiver domain DO83_11105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DO83_11105 PF00512 His Kinase A (phospho-acceptor) domain DO83_11105 PF00672 HAMP domain DO83_11125 PF02311 AraC-like ligand binding domain DO83_11125 PF12833 Helix-turn-helix domain DO83_11135 PF00703 Glycosyl hydrolases family 2 DO83_11135 PF02836 Glycosyl hydrolases family 2, TIM barrel domain DO83_11135 PF02837 Glycosyl hydrolases family 2, sugar binding domain DO83_11140 PF02929 Beta galactosidase small chain DO83_11150 PF01022 Bacterial regulatory protein, arsR family DO83_11155 PF03773 Predicted permease DO83_11165 PF01758 Sodium Bile acid symporter family DO83_11200 PF03448 MgtE intracellular N domain DO83_11200 PF01769 Divalent cation transporter DO83_11200 PF00571 CBS domain DO83_11210 PF01699 Sodium/calcium exchanger protein DO83_11215 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DO83_11215 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DO83_11220 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DO83_11225 PF00392 Bacterial regulatory proteins, gntR family DO83_11225 PF00155 Aminotransferase class I and II DO83_11230 PF07724 AAA domain (Cdc48 subfamily) DO83_11230 PF06689 ClpX C4-type zinc finger DO83_11230 PF10431 C-terminal, D2-small domain, of ClpB protein DO83_11235 PF01063 Amino-transferase class IV DO83_11245 PF06874 Firmicute fructose-1,6-bisphosphatase DO83_11250 PF00082 Subtilase family DO83_11265 PF00266 Aminotransferase class-V DO83_11270 PF01592 NifU-like N terminal domain DO83_11285 PF00486 Transcriptional regulatory protein, C terminal DO83_11285 PF00072 Response regulator receiver domain DO83_11290 PF00989 PAS fold DO83_11290 PF00512 His Kinase A (phospho-acceptor) domain DO83_11290 PF18698 Histidine kinase sensor domain DO83_11290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DO83_11290 PF00672 HAMP domain DO83_11300 PF00117 Glutamine amidotransferase class-I DO83_11305 PF00977 Histidine biosynthesis protein DO83_11315 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system DO83_11340 PF01544 CorA-like Mg2+ transporter protein DO83_11350 PF00391 PEP-utilising enzyme, mobile domain DO83_11350 PF00224 Pyruvate kinase, barrel domain DO83_11350 PF02887 Pyruvate kinase, alpha/beta domain DO83_11375 PF00830 Ribosomal L28 family DO83_11385 PF13684 Dihydroxyacetone kinase family DO83_11385 PF02734 DAK2 domain DO83_11390 PF17191 RecG wedge domain DO83_11390 PF00270 DEAD/DEAH box helicase DO83_11390 PF00271 Helicase conserved C-terminal domain DO83_11395 PF00708 Acylphosphatase DO83_11400 PF00269 Small, acid-soluble spore proteins, alpha/beta type DO83_11410 PF01467 Cytidylyltransferase-like DO83_11425 PF05636 HIGH Nucleotidyl Transferase DO83_11435 PF00871 Acetokinase family DO83_11445 PF01783 Ribosomal L32p protein family DO83_11450 PF02504 Fatty acid synthesis protein DO83_11455 PF14622 Ribonuclease-III-like DO83_11455 PF00035 Double-stranded RNA binding motif DO83_11465 PF00448 SRP54-type protein, GTPase domain DO83_11465 PF02881 SRP54-type protein, helical bundle domain DO83_11470 PF13291 ACT domain DO83_11470 PF00291 Pyridoxal-phosphate dependent enzyme DO83_11475 PF00128 Alpha amylase, catalytic domain DO83_11475 PF02806 Alpha amylase, C-terminal all-beta domain DO83_11475 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DO83_11485 PF00483 Nucleotidyl transferase DO83_11490 PF08323 Starch synthase catalytic domain DO83_11490 PF00534 Glycosyl transferases group 1 DO83_11495 PF00343 Carbohydrate phosphorylase DO83_11500 PF02903 Alpha amylase, N-terminal ig-like domain DO83_11500 PF00128 Alpha amylase, catalytic domain DO83_11505 PF02690 Na+/Pi-cotransporter DO83_11510 PF04055 Radical SAM superfamily DO83_11510 PF01938 TRAM domain DO83_11510 PF00919 Uncharacterized protein family UPF0004 DO83_11515 PF00488 MutS domain V DO83_11515 PF05190 MutS family domain IV DO83_11515 PF01624 MutS domain I DO83_11515 PF05192 MutS domain III DO83_11515 PF05188 MutS domain II DO83_11520 PF08676 MutL C terminal dimerisation domain DO83_11520 PF01119 DNA mismatch repair protein, C-terminal domain DO83_11525 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DO83_11535 PF06838 Methionine gamma-lyase DO83_11540 PF04002 RadC-like JAB domain DO83_11560 PF03717 Penicillin-binding Protein dimerisation domain DO83_11560 PF00905 Penicillin binding protein transpeptidase domain DO83_11565 PF03775 Septum formation inhibitor MinC, C-terminal domain DO83_11570 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DO83_11575 PF03776 Septum formation topological specificity factor MinE DO83_11580 PF01098 Cell cycle protein DO83_11585 PF02142 MGS-like domain DO83_11590 PF00768 D-alanyl-D-alanine carboxypeptidase DO83_11590 PF07943 Penicillin-binding protein 5, C-terminal domain DO83_11595 PF04055 Radical SAM superfamily DO83_11595 PF16199 Radical_SAM C-terminal domain DO83_11605 PF01168 Alanine racemase, N-terminal domain DO83_11615 PF01479 S4 domain DO83_11615 PF17774 Putative RNA-binding domain in YlmH DO83_11620 PF05103 DivIVA protein DO83_11625 PF01761 3-dehydroquinate synthase DO83_11630 PF01252 Signal peptidase (SPase) II DO83_11635 PF00849 RNA pseudouridylate synthase DO83_11635 PF01479 S4 domain DO83_11640 PF14748 Pyrroline-5-carboxylate reductase dimerisation DO83_11640 PF03807 NADP oxidoreductase coenzyme F420-dependent DO83_11650 PF00575 S1 RNA binding domain DO83_11650 PF01138 3' exoribonuclease family, domain 1 DO83_11650 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain DO83_11650 PF00013 KH domain DO83_11650 PF03725 3' exoribonuclease family, domain 2 DO83_11665 PF02545 Maf-like protein DO83_11670 PF02645 Uncharacterised protein, DegV family COG1307 DO83_11685 PF05922 Peptidase inhibitor I9 DO83_11685 PF13860 FlgD Ig-like domain DO83_11685 PF00082 Subtilase family DO83_11685 PF02225 PA domain DO83_11690 PF00343 Carbohydrate phosphorylase DO83_11700 PF16123 Hydroxyacylglutathione hydrolase C-terminus DO83_11700 PF00753 Metallo-beta-lactamase superfamily DO83_11710 PF03610 PTS system fructose IIA component DO83_11715 PF03830 PTS system sorbose subfamily IIB component DO83_11720 PF03609 PTS system sorbose-specific iic component DO83_11725 PF03613 PTS system mannose/fructose/sorbose family IID component DO83_11730 PF08240 Alcohol dehydrogenase GroES-like domain DO83_11730 PF00107 Zinc-binding dehydrogenase DO83_11735 PF01418 Helix-turn-helix domain, rpiR family DO83_11735 PF01380 SIS domain DO83_11740 PF00106 short chain dehydrogenase DO83_11750 PF16360 GTP-binding GTPase Middle Region DO83_11750 PF13167 GTP-binding GTPase N-terminal DO83_11750 PF01926 50S ribosome-binding GTPase DO83_11755 PF03123 CAT RNA binding domain DO83_11755 PF00874 PRD domain DO83_11760 PF00381 PTS HPr component phosphorylation site DO83_11765 PF05524 PEP-utilising enzyme, N-terminal DO83_11765 PF02896 PEP-utilising enzyme, TIM barrel domain DO83_11765 PF00391 PEP-utilising enzyme, mobile domain DO83_11890 PF12631 MnmE helical domain DO83_11890 PF10396 GTP-binding protein TrmE N-terminus DO83_11890 PF01926 50S ribosome-binding GTPase DO83_11895 PF00749 tRNA synthetases class I (E and Q), catalytic domain DO83_11900 PF00580 UvrD/REP helicase N-terminal domain DO83_11900 PF13361 UvrD-like helicase C-terminal domain DO83_11915 PF00999 Sodium/hydrogen exchanger family DO83_11930 PF00586 AIR synthase related protein, N-terminal domain DO83_11930 PF02769 AIR synthase related protein, C-terminal domain DO83_11930 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain DO83_11940 PF00571 CBS domain DO83_11940 PF03471 Transporter associated domain DO83_11940 PF01595 Cyclin M transmembrane N-terminal domain DO83_11945 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DO83_11945 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DO83_11950 PF02659 Putative manganese efflux pump DO83_11955 PF13597 Anaerobic ribonucleoside-triphosphate reductase DO83_11955 PF03477 ATP cone domain DO83_11965 PF00392 Bacterial regulatory proteins, gntR family DO83_11965 PF07729 FCD domain DO83_11970 PF07724 AAA domain (Cdc48 subfamily) DO83_11970 PF10431 C-terminal, D2-small domain, of ClpB protein DO83_11970 PF02861 Clp amino terminal domain, pathogenicity island component DO83_11970 PF17871 AAA lid domain DO83_11970 PF00004 ATPase family associated with various cellular activities (AAA) DO83_11980 PF18073 Rubredoxin metal binding domain DO83_11985 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain DO83_11985 PF00749 tRNA synthetases class I (E and Q), catalytic domain DO83_11990 PF03830 PTS system sorbose subfamily IIB component DO83_11990 PF03610 PTS system fructose IIA component DO83_11995 PF03830 PTS system sorbose subfamily IIB component DO83_12000 PF00166 Chaperonin 10 Kd subunit DO83_12005 PF00118 TCP-1/cpn60 chaperonin family DO83_12010 PF01116 Fructose-bisphosphate aldolase class-II DO83_12015 PF00107 Zinc-binding dehydrogenase DO83_12015 PF08240 Alcohol dehydrogenase GroES-like domain DO83_12020 PF00465 Iron-containing alcohol dehydrogenase DO83_12025 PF00175 Oxidoreductase NAD-binding domain DO83_12025 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B DO83_12030 PF13247 4Fe-4S dicluster domain DO83_12030 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DO83_12030 PF07992 Pyridine nucleotide-disulphide oxidoreductase DO83_12040 PF00478 IMP dehydrogenase / GMP reductase domain DO83_12040 PF00571 CBS domain DO83_12045 PF00873 AcrB/AcrD/AcrF family DO83_12060 PF01066 CDP-alcohol phosphatidyltransferase DO83_12065 PF02666 Phosphatidylserine decarboxylase DO83_12070 PF01235 Sodium:alanine symporter family DO83_12075 PF04552 Sigma-54, DNA binding domain DO83_12075 PF00309 Sigma-54 factor, Activator interacting domain (AID) DO83_12075 PF04963 Sigma-54 factor, core binding domain DO83_12085 PF03123 CAT RNA binding domain DO83_12085 PF00874 PRD domain DO83_12090 PF02378 Phosphotransferase system, EIIC DO83_12090 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DO83_12090 PF00367 phosphotransferase system, EIIB DO83_12095 PF00232 Glycosyl hydrolase family 1 DO83_12100 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain DO83_12100 PF00391 PEP-utilising enzyme, mobile domain DO83_12100 PF02896 PEP-utilising enzyme, TIM barrel domain DO83_12105 PF13419 Haloacid dehalogenase-like hydrolase DO83_12110 PF13091 PLD-like domain DO83_12125 PF02535 ZIP Zinc transporter DO83_12140 PF13091 PLD-like domain DO83_12160 PF00512 His Kinase A (phospho-acceptor) domain DO83_12160 PF09308 LuxQ, periplasmic DO83_12160 PF00072 Response regulator receiver domain DO83_12160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DO83_12175 PF01554 MatE DO83_12185 PF00440 Bacterial regulatory proteins, tetR family DO83_12205 PF18665 Tetracyclin repressor-like, C-terminal domain DO83_12205 PF00440 Bacterial regulatory proteins, tetR family DO83_12225 PF00512 His Kinase A (phospho-acceptor) domain DO83_12225 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DO83_12225 PF00072 Response regulator receiver domain DO83_12225 PF01627 Hpt domain DO83_12225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DO83_12225 PF00672 HAMP domain DO83_12230 PF00072 Response regulator receiver domain DO83_12235 PF03466 LysR substrate binding domain DO83_12235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DO83_12250 PF00248 Aldo/keto reductase family DO83_12270 PF01979 Amidohydrolase family DO83_12275 PF03553 Na+/H+ antiporter family DO83_12280 PF00485 Phosphoribulokinase / Uridine kinase family DO83_12305 PF01451 Low molecular weight phosphotyrosine protein phosphatase DO83_12315 PF07499 RuvA, C-terminal domain DO83_12315 PF01330 RuvA N terminal domain DO83_12320 PF02378 Phosphotransferase system, EIIC DO83_12320 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DO83_12320 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DO83_12325 PF00392 Bacterial regulatory proteins, gntR family DO83_12330 PF02610 L-arabinose isomerase DO83_12330 PF11762 L-arabinose isomerase C-terminal domain DO83_12340 PF00596 Class II Aldolase and Adducin N-terminal domain DO83_12345 PF01263 Aldose 1-epimerase DO83_12350 PF00072 Response regulator receiver domain DO83_12350 PF12833 Helix-turn-helix domain DO83_12355 PF06580 Histidine kinase DO83_12355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DO83_12355 PF00672 HAMP domain DO83_12355 PF02743 Cache domain DO83_12360 PF13407 Periplasmic binding protein domain DO83_12365 PF00005 ABC transporter DO83_12370 PF02653 Branched-chain amino acid transport system / permease component DO83_12375 PF02653 Branched-chain amino acid transport system / permease component DO83_12385 PF12833 Helix-turn-helix domain DO83_12395 PF16874 Glycosyl hydrolase family 36 C-terminal domain DO83_12395 PF16875 Glycosyl hydrolase family 36 N-terminal domain DO83_12410 PF01797 Transposase IS200 like DO83_12415 PF00356 Bacterial regulatory proteins, lacI family DO83_12425 PF08544 GHMP kinases C terminal DO83_12425 PF00288 GHMP kinases N terminal domain DO83_12425 PF10509 Galactokinase galactose-binding signature DO83_12430 PF01263 Aldose 1-epimerase DO83_12435 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain DO83_12435 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain DO83_12440 PF16363 GDP-mannose 4,6 dehydratase DO83_12445 PF00664 ABC transporter transmembrane region DO83_12445 PF00005 ABC transporter DO83_12450 PF00005 ABC transporter DO83_12450 PF00664 ABC transporter transmembrane region DO83_12455 PF02417 Chromate transporter DO83_12460 PF02417 Chromate transporter DO83_12465 PF00570 HRDC domain DO83_12465 PF00271 Helicase conserved C-terminal domain DO83_12465 PF00270 DEAD/DEAH box helicase DO83_12465 PF16124 RecQ zinc-binding DO83_12465 PF09382 RQC domain DO83_12475 PF14693 Ribosomal protein TL5, C-terminal domain DO83_12475 PF01386 Ribosomal L25p family DO83_12485 PF02441 Flavoprotein DO83_12490 PF00733 Asparagine synthase DO83_12490 PF13537 Glutamine amidotransferase domain DO83_12505 PF00183 Hsp90 protein DO83_12510 PF02677 Epoxyqueuosine reductase QueH DO83_12515 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain DO83_12515 PF00117 Glutamine amidotransferase class-I DO83_12520 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DO83_12520 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DO83_12520 PF02142 MGS-like domain DO83_12525 PF03951 Glutamine synthetase, beta-Grasp domain DO83_12525 PF00120 Glutamine synthetase, catalytic domain DO83_12535 PF00155 Aminotransferase class I and II DO83_12545 PF02142 MGS-like domain DO83_12545 PF01808 AICARFT/IMPCHase bienzyme DO83_12550 PF02901 Pyruvate formate lyase-like DO83_12550 PF01228 Glycine radical DO83_12555 PF04055 Radical SAM superfamily DO83_12560 PF01797 Transposase IS200 like DO83_12590 PF01926 50S ribosome-binding GTPase DO83_12590 PF06071 Protein of unknown function (DUF933) DO83_12595 PF01790 Prolipoprotein diacylglyceryl transferase DO83_12600 PF02381 MraZ protein, putative antitoxin-like DO83_12605 PF01795 MraW methylase family DO83_12615 PF00905 Penicillin binding protein transpeptidase domain DO83_12615 PF03717 Penicillin-binding Protein dimerisation domain DO83_12615 PF03793 PASTA domain DO83_12620 PF00905 Penicillin binding protein transpeptidase domain DO83_12620 PF03793 PASTA domain DO83_12620 PF03717 Penicillin-binding Protein dimerisation domain DO83_12625 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 DO83_12625 PF00953 Glycosyl transferase family 4 DO83_12630 PF08245 Mur ligase middle domain DO83_12630 PF02875 Mur ligase family, glutamate ligase domain DO83_12635 PF01098 Cell cycle protein DO83_12645 PF00091 Tubulin/FtsZ family, GTPase domain DO83_12645 PF12327 FtsZ family, C-terminal domain DO83_12650 PF04055 Radical SAM superfamily DO83_12650 PF06968 Biotin and Thiamin Synthesis associated domain DO83_12665 PF12557 Cob(I)alamin adenosyltransferase N terminal DO83_12665 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP DO83_12670 PF00701 Dihydrodipicolinate synthetase family DO83_12675 PF05173 Dihydrodipicolinate reductase, C-terminus DO83_12675 PF01113 Dihydrodipicolinate reductase, N-terminus DO83_12685 PF00465 Iron-containing alcohol dehydrogenase DO83_12715 PF01380 SIS domain DO83_12735 PF13193 AMP-binding enzyme C-terminal domain DO83_12735 PF00501 AMP-binding enzyme DO83_12800 PF00589 Phage integrase family DO83_12800 PF14659 Phage integrase, N-terminal SAM-like domain DO83_12810 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DO83_12810 PF05698 Bacterial trigger factor protein (TF) C-terminus DO83_12810 PF05697 Bacterial trigger factor protein (TF) DO83_12815 PF00574 Clp protease DO83_12820 PF07724 AAA domain (Cdc48 subfamily) DO83_12820 PF10431 C-terminal, D2-small domain, of ClpB protein DO83_12820 PF06689 ClpX C4-type zinc finger DO83_12825 PF05362 Lon protease (S16) C-terminal proteolytic domain DO83_12825 PF02190 ATP-dependent protease La (LON) substrate-binding domain DO83_12825 PF00004 ATPase family associated with various cellular activities (AAA) DO83_12830 PF02875 Mur ligase family, glutamate ligase domain DO83_12830 PF08245 Mur ligase middle domain DO83_12835 PF01966 HD domain DO83_12840 PF00809 Pterin binding enzyme DO83_12845 PF02152 Dihydroneopterin aldolase DO83_12845 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DO83_12850 PF00800 Prephenate dehydratase DO83_12850 PF01817 Chorismate mutase type II DO83_12850 PF01842 ACT domain DO83_12855 PF00884 Sulfatase DO83_12860 PF00709 Adenylosuccinate synthetase DO83_12865 PF10502 Signal peptidase, peptidase S26 DO83_12870 PF01042 Endoribonuclease L-PSP DO83_12875 PF00155 Aminotransferase class I and II DO83_12900 PF10458 Valyl tRNA synthetase tRNA binding arm DO83_12900 PF00133 tRNA synthetases class I (I, L, M and V) DO83_12900 PF08264 Anticodon-binding domain of tRNA DO83_12915 PF01330 RuvA N terminal domain DO83_12915 PF07499 RuvA, C-terminal domain DO83_12920 PF17864 RuvB AAA lid domain DO83_12920 PF05491 RuvB C-terminal winged helix domain DO83_12920 PF05496 Holliday junction DNA helicase RuvB P-loop domain DO83_12930 PF01098 Cell cycle protein DO83_12935 PF00905 Penicillin binding protein transpeptidase domain DO83_12940 PF00293 NUDIX domain DO83_12945 PF00768 D-alanyl-D-alanine carboxypeptidase DO83_12945 PF07943 Penicillin-binding protein 5, C-terminal domain DO83_12950 PF00106 short chain dehydrogenase DO83_12955 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DO83_12955 PF00874 PRD domain DO83_12955 PF05043 Mga helix-turn-helix domain DO83_12955 PF08279 HTH domain DO83_12965 PF03608 PTS system enzyme II sorbitol-specific factor DO83_12970 PF03612 Sorbitol phosphotransferase enzyme II N-terminus DO83_12970 PF07663 Sorbitol phosphotransferase enzyme II C-terminus DO83_12975 PF03829 PTS system glucitol/sorbitol-specific IIA component DO83_12985 PF02616 Segregation and condensation protein ScpA DO83_12990 PF04079 Segregation and condensation complex subunit ScpB DO83_12995 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DO83_12995 PF00205 Thiamine pyrophosphate enzyme, central domain DO83_12995 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DO83_13000 PF10369 Small subunit of acetolactate synthase DO83_13005 PF02803 Thiolase, C-terminal domain DO83_13005 PF00108 Thiolase, N-terminal domain DO83_13010 PF00378 Enoyl-CoA hydratase/isomerase DO83_13015 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DO83_13015 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DO83_13020 PF02770 Acyl-CoA dehydrogenase, middle domain DO83_13020 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DO83_13020 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DO83_13025 PF01012 Electron transfer flavoprotein domain DO83_13030 PF01012 Electron transfer flavoprotein domain DO83_13030 PF00766 Electron transfer flavoprotein FAD-binding domain DO83_13040 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain DO83_13040 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain DO83_13055 PF07943 Penicillin-binding protein 5, C-terminal domain DO83_13055 PF00768 D-alanyl-D-alanine carboxypeptidase DO83_13060 PF03960 ArsC family DO83_13065 PF02127 Aminopeptidase I zinc metalloprotease (M18) DO83_13070 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DO83_13075 PF03734 L,D-transpeptidase catalytic domain DO83_13080 PF09334 tRNA synthetases class I (M) DO83_13080 PF13603 Leucyl-tRNA synthetase, Domain 2 DO83_13080 PF00133 tRNA synthetases class I (I, L, M and V) DO83_13080 PF08264 Anticodon-binding domain of tRNA DO83_13090 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DO83_13090 PF00056 lactate/malate dehydrogenase, NAD binding domain DO83_13115 PF02110 Hydroxyethylthiazole kinase family DO83_13120 PF02581 Thiamine monophosphate synthase DO83_13125 PF00953 Glycosyl transferase family 4 DO83_13130 PF00694 Aconitase C-terminal domain DO83_13130 PF00330 Aconitase family (aconitate hydratase) DO83_13135 PF03553 Na+/H+ antiporter family DO83_13140 PF07726 ATPase family associated with various cellular activities (AAA) DO83_13140 PF17863 AAA lid domain DO83_13155 PF00877 NlpC/P60 family DO83_13160 PF12241 Trans-2-enoyl-CoA reductase catalytic region DO83_13160 PF07055 Enoyl reductase FAD binding domain DO83_13160 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase DO83_13165 PF10150 Ribonuclease E/G family DO83_13170 PF00829 Ribosomal prokaryotic L21 protein DO83_13180 PF01016 Ribosomal L27 protein DO83_13185 PF01926 50S ribosome-binding GTPase DO83_13185 PF01018 GTP1/OBG DO83_13185 PF09269 Domain of unknown function (DUF1967) DO83_13190 PF01985 CRS1 / YhbY (CRM) domain DO83_13195 PF01467 Cytidylyltransferase-like DO83_13200 PF01966 HD domain DO83_13210 PF00717 Peptidase S24-like DO83_13210 PF01726 LexA DNA binding domain DO83_13215 PF01476 LysM domain DO83_13220 PF01520 N-acetylmuramoyl-L-alanine amidase DO83_13220 PF05036 Sporulation related domain DO83_13225 PF01520 N-acetylmuramoyl-L-alanine amidase DO83_13240 PF00180 Isocitrate/isopropylmalate dehydrogenase DO83_13245 PF00920 Dehydratase family DO83_13250 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DO83_13250 PF00205 Thiamine pyrophosphate enzyme, central domain DO83_13250 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DO83_13255 PF00266 Aminotransferase class-V DO83_13260 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DO83_13260 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DO83_13265 PF02774 Semialdehyde dehydrogenase, dimerisation domain DO83_13265 PF01118 Semialdehyde dehydrogenase, NAD binding domain DO83_13270 PF00924 Mechanosensitive ion channel DO83_13270 PF05552 Conserved TM helix DO83_13280 PF01063 Amino-transferase class IV DO83_13290 PF00117 Glutamine amidotransferase class-I DO83_13355 PF04452 RNA methyltransferase DO83_13360 PF00266 Aminotransferase class-V DO83_13365 PF02568 Thiamine biosynthesis protein (ThiI) DO83_13365 PF02926 THUMP domain DO83_13375 PF04055 Radical SAM superfamily DO83_13375 PF01938 TRAM domain DO83_13375 PF00919 Uncharacterized protein family UPF0004 DO83_13380 PF06135 IreB regulatory phosphoprotein DO83_13385 PF03652 Holliday junction resolvase DO83_13395 PF00753 Metallo-beta-lactamase superfamily DO83_13395 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain DO83_13395 PF17770 Ribonuclease J C-terminal domain DO83_13415 PF04542 Sigma-70 region 2 DO83_13415 PF04545 Sigma-70, region 4 DO83_13450 PF00082 Subtilase family DO83_13505 PF00486 Transcriptional regulatory protein, C terminal DO83_13505 PF00072 Response regulator receiver domain DO83_13510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DO83_13510 PF00512 His Kinase A (phospho-acceptor) domain DO83_13510 PF11808 Phosphate regulon sensor protein PhoR DO83_13510 PF00989 PAS fold DO83_13525 PF03466 LysR substrate binding domain DO83_13525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DO83_13530 PF01053 Cys/Met metabolism PLP-dependent enzyme DO83_13540 PF07992 Pyridine nucleotide-disulphide oxidoreductase DO83_13540 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DO83_13545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DO83_13545 PF03466 LysR substrate binding domain DO83_13550 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DO83_13550 PF08501 Shikimate dehydrogenase substrate binding domain DO83_13555 PF07690 Major Facilitator Superfamily DO83_13560 PF01487 Type I 3-dehydroquinase DO83_13570 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DO83_13575 PF03480 Bacterial extracellular solute-binding protein, family 7 DO83_13585 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DO83_13585 PF07992 Pyridine nucleotide-disulphide oxidoreductase DO83_13590 PF03466 LysR substrate binding domain DO83_13590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DO83_13595 PF01202 Shikimate kinase DO83_13600 PF00465 Iron-containing alcohol dehydrogenase DO83_13605 PF08207 Elongation factor P (EF-P) KOW-like domain DO83_13605 PF01132 Elongation factor P (EF-P) OB domain DO83_13605 PF09285 Elongation factor P, C-terminal DO83_13615 PF03372 Endonuclease/Exonuclease/phosphatase family DO83_13620 PF00132 Bacterial transferase hexapeptide (six repeats) DO83_13620 PF14602 Hexapeptide repeat of succinyl-transferase DO83_13620 PF12804 MobA-like NTP transferase domain DO83_13635 PF00528 Binding-protein-dependent transport system inner membrane component DO83_13640 PF00528 Binding-protein-dependent transport system inner membrane component DO83_13645 PF00005 ABC transporter DO83_13645 PF08402 TOBE domain DO83_13655 PF12838 4Fe-4S dicluster domain DO83_13660 PF01507 Phosphoadenosine phosphosulfate reductase family DO83_13675 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DO83_13675 PF02378 Phosphotransferase system, EIIC DO83_13675 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DO83_13680 PF08125 Mannitol dehydrogenase C-terminal domain DO83_13680 PF01232 Mannitol dehydrogenase Rossmann domain DO83_13685 PF01228 Glycine radical DO83_13685 PF02901 Pyruvate formate lyase-like DO83_13695 PF00202 Aminotransferase class-III DO83_13700 PF00528 Binding-protein-dependent transport system inner membrane component DO83_13705 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DO83_13710 PF00005 ABC transporter DO83_13715 PF00465 Iron-containing alcohol dehydrogenase DO83_13720 PF00925 GTP cyclohydrolase II DO83_13720 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase DO83_13740 PF01634 ATP phosphoribosyltransferase DO83_13745 PF00815 Histidinol dehydrogenase DO83_13750 PF00475 Imidazoleglycerol-phosphate dehydratase DO83_13755 PF01502 Phosphoribosyl-AMP cyclohydrolase DO83_13755 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase DO83_13760 PF01411 tRNA synthetases class II (A) DO83_13760 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DO83_13760 PF02272 DHHA1 domain DO83_13765 PF01165 Ribosomal protein S21 DO83_13780 PF02562 PhoH-like protein DO83_13785 PF02130 Uncharacterized protein family UPF0054 DO83_13790 PF14667 Polysaccharide biosynthesis C-terminal domain DO83_13790 PF01943 Polysaccharide biosynthesis protein DO83_13810 PF01472 PUA domain DO83_13810 PF00696 Amino acid kinase family DO83_13815 PF05979 Bacterial protein of unknown function (DUF896) DO83_13820 PF00171 Aldehyde dehydrogenase family DO83_13825 PF10531 SLBB domain DO83_13825 PF13237 4Fe-4S dicluster domain DO83_13825 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DO83_13825 PF13375 RnfC Barrel sandwich hybrid domain DO83_13830 PF03116 NQR2, RnfD, RnfE family DO83_13835 PF04205 FMN-binding domain DO83_13840 PF02508 Rnf-Nqr subunit, membrane protein DO83_13845 PF02508 Rnf-Nqr subunit, membrane protein DO83_13850 PF04060 Putative Fe-S cluster DO83_13855 PF05239 PRC-barrel domain DO83_13860 PF03477 ATP cone domain DO83_13865 PF01078 Magnesium chelatase, subunit ChlI DO83_13865 PF13335 Magnesium chelatase, subunit ChlI C-terminal DO83_13870 PF02481 DNA recombination-mediator protein A DO83_13875 PF01751 Toprim domain DO83_13875 PF01396 Topoisomerase DNA binding C4 zinc finger DO83_13875 PF01131 DNA topoisomerase DO83_13880 PF08222 CodY helix-turn-helix domain DO83_13880 PF06018 CodY GAF-like domain DO83_13885 PF00318 Ribosomal protein S2 DO83_13895 PF13614 AAA domain DO83_13900 PF02195 ParB-like nuclease domain DO83_13900 PF17762 HTH domain found in ParB protein DO83_13945 PF03432 Relaxase/Mobilisation nuclease domain DO83_14000 PF04203 Sortase domain DO83_14135 PF00239 Resolvase, N terminal domain DO83_14135 PF02796 Helix-turn-helix domain of resolvase DO83_14145 PF00589 Phage integrase family DO83_14145 PF14659 Phage integrase, N-terminal SAM-like domain DO83_14165 PF00293 NUDIX domain DO83_14275 PF03358 NADPH-dependent FMN reductase DO83_14310 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system DO83_14325 PF00580 UvrD/REP helicase N-terminal domain DO83_14325 PF13361 UvrD-like helicase C-terminal domain DO83_14335 PF00202 Aminotransferase class-III DO83_14345 PF00465 Iron-containing alcohol dehydrogenase DO83_14360 PF01012 Electron transfer flavoprotein domain DO83_14365 PF00766 Electron transfer flavoprotein FAD-binding domain DO83_14365 PF01012 Electron transfer flavoprotein domain DO83_14370 PF01565 FAD binding domain DO83_14370 PF02913 FAD linked oxidases, C-terminal domain DO83_14380 PF08543 Phosphomethylpyrimidine kinase DO83_14380 PF02581 Thiamine monophosphate synthase DO83_14400 PF14824 Sirohaem biosynthesis protein central DO83_14400 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DO83_14400 PF10414 Sirohaem synthase dimerisation region DO83_14405 PF00490 Delta-aminolevulinic acid dehydratase DO83_14410 PF00202 Aminotransferase class-III DO83_14415 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain DO83_14415 PF01488 Shikimate / quinate 5-dehydrogenase DO83_14415 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain DO83_14420 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain DO83_14420 PF03900 Porphobilinogen deaminase, C-terminal domain DO83_14425 PF01569 PAP2 superfamily DO83_14435 PF01554 MatE DO83_14440 PF02769 AIR synthase related protein, C-terminal domain DO83_14440 PF00586 AIR synthase related protein, N-terminal domain DO83_14445 PF06463 Molybdenum Cofactor Synthesis C DO83_14445 PF04055 Radical SAM superfamily DO83_14450 PF01967 MoaC family DO83_14455 PF00994 Probable molybdopterin binding domain DO83_14460 PF00528 Binding-protein-dependent transport system inner membrane component DO83_14465 PF08402 TOBE domain DO83_14465 PF00005 ABC transporter DO83_14480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DO83_14480 PF03459 TOBE domain DO83_14495 PF02625 XdhC and CoxI family DO83_14495 PF13478 XdhC Rossmann domain DO83_14500 PF02625 XdhC and CoxI family DO83_14500 PF13478 XdhC Rossmann domain DO83_14505 PF00155 Aminotransferase class I and II DO83_14525 PF00005 ABC transporter DO83_14540 PF00375 Sodium:dicarboxylate symporter family DO83_14545 PF00579 tRNA synthetases class I (W and Y) DO83_14550 PF04397 LytTr DNA-binding domain DO83_14550 PF00072 Response regulator receiver domain DO83_14555 PF17203 Single cache domain 3 DO83_14555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DO83_14555 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain DO83_14555 PF00989 PAS fold DO83_14565 PF02920 DNA binding domain of tn916 integrase DO83_14565 PF00589 Phage integrase family DO83_14570 PF09035 Excisionase from transposon Tn916 DO83_14590 PF14492 Elongation Factor G, domain II DO83_14590 PF00009 Elongation factor Tu GTP binding domain DO83_14590 PF03764 Elongation factor G, domain IV DO83_14590 PF00679 Elongation factor G C-terminus DO83_14600 PF00877 NlpC/P60 family DO83_14630 PF18106 Rolling Circle replication initiation protein N-terminal domain DO83_14630 PF02486 Replication initiation factor DO83_14645 PF06125 Bacterial protein of unknown function (DUF961) DO83_14655 PF00005 ABC transporter DO83_14655 PF13732 Domain of unknown function (DUF4162) DO83_14670 PF01717 Cobalamin-independent synthase, Catalytic domain DO83_14675 PF01416 tRNA pseudouridine synthase DO83_14680 PF00171 Aldehyde dehydrogenase family DO83_14690 PF00860 Permease family DO83_14695 PF12850 Calcineurin-like phosphoesterase superfamily domain DO83_14700 PF01131 DNA topoisomerase DO83_14700 PF01751 Toprim domain DO83_14715 PF04298 Putative neutral zinc metallopeptidase DO83_14720 PF00075 RNase H DO83_14735 PF02590 Predicted SPOUT methyltransferase DO83_14740 PF03061 Thioesterase superfamily DO83_14745 PF01554 MatE DO83_14760 PF02590 Predicted SPOUT methyltransferase DO83_14770 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DO83_14770 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DO83_14775 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain DO83_14775 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain DO83_14780 PF02824 TGS domain DO83_14780 PF13291 ACT domain DO83_14780 PF04607 Region found in RelA / SpoT proteins DO83_14785 PF00753 Metallo-beta-lactamase superfamily DO83_14790 PF04055 Radical SAM superfamily DO83_14800 PF13393 Histidyl-tRNA synthetase DO83_14800 PF03129 Anticodon binding domain DO83_14810 PF01336 OB-fold nucleic acid binding domain DO83_14810 PF00152 tRNA synthetases class II (D, K and N) DO83_14810 PF02938 GAD domain DO83_14815 PF00696 Amino acid kinase family DO83_14815 PF01842 ACT domain DO83_14815 PF13840 ACT domain DO83_14820 PF00464 Serine hydroxymethyltransferase DO83_14835 PF02311 AraC-like ligand binding domain DO83_14835 PF12833 Helix-turn-helix domain DO83_14845 PF01751 Toprim domain DO83_14845 PF01131 DNA topoisomerase DO83_14870 PF09546 Stage III sporulation protein AE (spore_III_AE) DO83_14890 PF00872 Transposase, Mutator family DO83_14925 PF01867 CRISPR associated protein Cas1 DO83_14930 PF09827 CRISPR associated protein Cas2 DO83_14985 PF12102 Domain of unknown function (DUF3578) DO83_14985 PF07728 AAA domain (dynein-related subfamily) DO83_15010 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DO83_15010 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DO83_15035 PF01327 Polypeptide deformylase DO83_15095 PF11798 IMS family HHH motif DO83_15095 PF11799 impB/mucB/samB family C-terminal domain DO83_15095 PF00817 impB/mucB/samB family DO83_15105 PF02901 Pyruvate formate lyase-like DO83_15105 PF01228 Glycine radical DO83_15110 PF04055 Radical SAM superfamily DO83_15115 PF00378 Enoyl-CoA hydratase/isomerase DO83_15120 PF01144 Coenzyme A transferase DO83_15125 PF01144 Coenzyme A transferase DO83_15130 PF00860 Permease family DO83_15135 PF01869 BadF/BadG/BcrA/BcrD ATPase family DO83_15140 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component DO83_15150 PF01385 Probable transposase DO83_15150 PF07282 Putative transposase DNA-binding domain DO83_15150 PF12323 Helix-turn-helix domain DO83_15155 PF00005 ABC transporter DO83_15155 PF08402 TOBE domain DO83_15160 PF00528 Binding-protein-dependent transport system inner membrane component DO83_15165 PF00528 Binding-protein-dependent transport system inner membrane component DO83_15175 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase DO83_15185 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II DO83_15185 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg DO83_15190 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DO83_15195 PF03466 LysR substrate binding domain DO83_15195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DO83_15200 PF00107 Zinc-binding dehydrogenase DO83_15200 PF08240 Alcohol dehydrogenase GroES-like domain DO83_15210 PF00588 SpoU rRNA Methylase family DO83_15215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DO83_15215 PF03466 LysR substrate binding domain DO83_15220 PF03816 Cell envelope-related transcriptional attenuator domain DO83_15245 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family DO83_15255 PF05362 Lon protease (S16) C-terminal proteolytic domain DO83_15255 PF00004 ATPase family associated with various cellular activities (AAA) DO83_15255 PF02190 ATP-dependent protease La (LON) substrate-binding domain DO83_15265 PF07670 Nucleoside recognition DO83_15265 PF04023 FeoA domain DO83_15265 PF02421 Ferrous iron transport protein B DO83_15265 PF07664 Ferrous iron transport protein B C terminus DO83_15265 PF17910 FeoB cytosolic helical domain DO83_15270 PF00403 Heavy-metal-associated domain DO83_15275 PF02583 Metal-sensitive transcriptional repressor DO83_15300 PF13302 Acetyltransferase (GNAT) domain DO83_15300 PF00958 GMP synthase C terminal domain DO83_15300 PF00117 Glutamine amidotransferase class-I DO83_15300 PF03352 Methyladenine glycosylase DO83_15300 PF13673 Acetyltransferase (GNAT) domain DO83_15305 PF00149 Calcineurin-like phosphoesterase DO83_15320 PF00795 Carbon-nitrogen hydrolase DO83_15325 PF01566 Natural resistance-associated macrophage protein DO83_15330 PF02899 Phage integrase, N-terminal SAM-like domain DO83_15330 PF00589 Phage integrase family DO83_15375 PF01925 Sulfite exporter TauE/SafE DO83_15380 PF02810 SEC-C motif DO83_15380 PF00557 Metallopeptidase family M24