DO83_00085 SM00904 Riboflavin kinase DO83_00120 SM00316 Ribosomal protein S1-like RNA-binding domain DO83_00130 SM00479 DO83_00130 DO83_00130 SM00481 DNA polymerase alpha chain like domain DO83_00225 SM00434 DNA Topoisomerase IV DO83_00230 SM00387 Histidine kinase-like ATPases DO83_00230 SM00433 TopoisomeraseII DO83_00250 SM00448 cheY-homologous receiver domain DO83_00255 SM00448 cheY-homologous receiver domain DO83_00260 SM00448 cheY-homologous receiver domain DO83_00300 SM00363 S4 RNA-binding domain DO83_00305 SM00861 Transketolase, pyrimidine binding domain DO83_00420 SM00382 ATPases associated with a variety of cellular activities DO83_00435 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DO83_00435 SM00387 Histidine kinase-like ATPases DO83_00435 SM00388 His Kinase A (phosphoacceptor) domain DO83_00440 SM00448 cheY-homologous receiver domain DO83_00440 SM00862 Transcriptional regulatory protein, C terminal DO83_00475 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DO83_00475 SM00387 Histidine kinase-like ATPases DO83_00475 SM00388 His Kinase A (phosphoacceptor) domain DO83_00480 SM00448 cheY-homologous receiver domain DO83_00480 SM00862 Transcriptional regulatory protein, C terminal DO83_00485 SM00155 Phospholipase D. Active site motifs. DO83_00500 SM00155 Phospholipase D. Active site motifs. DO83_00505 SM00954 Region found in RelA / SpoT proteins DO83_00530 SM00470 ParB-like nuclease domain DO83_00540 SM00470 ParB-like nuclease domain DO83_00565 SM00422 helix_turn_helix, mercury resistance DO83_00610 SM00116 Domain in cystathionine beta-synthase and other proteins. DO83_00610 SM01091 Transporter associated domain DO83_00620 SM01005 Alanine racemase, C-terminal domain DO83_00635 SM00881 CoA binding domain DO83_00640 SM00382 ATPases associated with a variety of cellular activities DO83_00655 SM00729 Elongator protein 3, MiaB family, Radical SAM DO83_00660 SM00838 Elongation factor G C-terminus DO83_00685 SM00849 Metallo-beta-lactamase superfamily DO83_00690 SM00909 Sporulation and spore germination DO83_00695 SM00387 Histidine kinase-like ATPases DO83_00695 SM00388 His Kinase A (phosphoacceptor) domain DO83_00700 SM00448 cheY-homologous receiver domain DO83_00700 SM00862 Transcriptional regulatory protein, C terminal DO83_00730 SM00859 Semialdehyde dehydrogenase, NAD binding domain DO83_00790 SM00345 helix_turn_helix gluconate operon transcriptional repressor DO83_00820 SM00271 DnaJ molecular chaperone homology domain DO83_00850 SM00420 helix_turn_helix, Deoxyribose operon repressor DO83_00850 SM01134 DO83_00850 DO83_00875 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DO83_00920 SM00849 Metallo-beta-lactamase superfamily DO83_00930 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs DO83_00930 SM00475 5'-3' exonuclease DO83_00930 SM00482 DNA polymerase A domain DO83_01030 SM00487 DEAD-like helicases superfamily DO83_01070 SM00382 ATPases associated with a variety of cellular activities DO83_01075 SM00382 ATPases associated with a variety of cellular activities DO83_01140 SM00400 zinc finger DO83_01140 SM00493 DO83_01140 DO83_01145 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DO83_01160 SM01409 DO83_01160 DO83_01165 SM00072 Guanylate kinase homologues. DO83_01180 SM00363 S4 RNA-binding domain DO83_01195 SM00363 S4 RNA-binding domain DO83_01205 SM00954 Region found in RelA / SpoT proteins DO83_01245 SM01207 DO83_01245 DO83_01595 SM00530 Helix-turn-helix XRE-family like proteins DO83_01610 SM00530 Helix-turn-helix XRE-family like proteins DO83_01615 SM00530 Helix-turn-helix XRE-family like proteins DO83_01670 SM00316 Ribosomal protein S1-like RNA-binding domain DO83_01670 SM00357 Cold shock protein domain DO83_01670 SM00955 DO83_01670 DO83_01680 SM01192 DO83_01680 DO83_01680 SM01193 DO83_01680 DO83_01765 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DO83_01775 SM00481 DNA polymerase alpha chain like domain DO83_01780 SM00729 Elongator protein 3, MiaB family, Radical SAM DO83_01785 SM00287 Bacterial SH3 domain homologues DO83_01875 SM00382 ATPases associated with a variety of cellular activities DO83_01875 SM00962 SRP54-type protein, GTPase domain DO83_01875 SM00963 SRP54-type protein, helical bundle domain DO83_01885 SM00382 ATPases associated with a variety of cellular activities DO83_01890 SM00450 Rhodanese Homology Domain DO83_01900 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DO83_01900 SM00387 Histidine kinase-like ATPases DO83_01900 SM00388 His Kinase A (phosphoacceptor) domain DO83_01905 SM00448 cheY-homologous receiver domain DO83_01905 SM00862 Transcriptional regulatory protein, C terminal DO83_01920 SM00382 ATPases associated with a variety of cellular activities DO83_01925 SM00852 Probable molybdopterin binding domain DO83_01935 SM00729 Elongator protein 3, MiaB family, Radical SAM DO83_01950 SM00382 ATPases associated with a variety of cellular activities DO83_01950 SM00843 DO83_01950 DO83_01965 SM00878 Biotin carboxylase C-terminal domain DO83_01990 SM00422 helix_turn_helix, mercury resistance DO83_02015 SM00287 Bacterial SH3 domain homologues DO83_02075 SM00873 B3/4 domain DO83_02075 SM00874 tRNA synthetase B5 domain DO83_02075 SM00896 Ferredoxin-fold anticodon binding domain DO83_02120 SM01061 CAT RNA binding domain DO83_02140 SM00062 Bacterial periplasmic substrate-binding proteins DO83_02140 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. DO83_02140 SM00918 Ligated ion channel L-glutamate- and glycine-binding site DO83_02185 SM00155 Phospholipase D. Active site motifs. DO83_02225 SM00382 ATPases associated with a variety of cellular activities DO83_02225 SM00930 DO83_02225 DO83_02235 SM00635 Bacterial Ig-like domain 2 DO83_02360 SM01209 DO83_02360 DO83_02360 SM01210 DO83_02360 DO83_02375 SM00646 DO83_02375 DO83_02380 SM01001 AIR carboxylase DO83_02405 SM00116 Domain in cystathionine beta-synthase and other proteins. DO83_02420 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family DO83_02435 SM00876 Biotin and Thiamin Synthesis associated domain DO83_02705 SM00530 Helix-turn-helix XRE-family like proteins DO83_02775 SM00967 RNA 2'-O ribose methyltransferase substrate binding DO83_02785 SM00840 DO83_02785 DO83_02805 SM01266 DO83_02805 DO83_02840 SM00917 LeuA allosteric (dimerisation) domain DO83_02845 SM01018 B12 binding domain DO83_02915 SM01230 DO83_02915 DO83_02920 SM00564 beta-propeller repeat DO83_02930 SM00382 ATPases associated with a variety of cellular activities DO83_02965 SM01061 CAT RNA binding domain DO83_02970 SM00646 DO83_02970 DO83_03015 SM00422 helix_turn_helix, mercury resistance DO83_03105 SM00954 Region found in RelA / SpoT proteins DO83_03115 SM00347 helix_turn_helix multiple antibiotic resistance protein DO83_03190 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DO83_03215 SM00420 helix_turn_helix, Deoxyribose operon repressor DO83_03215 SM01134 DO83_03215 DO83_03230 SM01133 DO83_03230 DO83_03265 SM00354 helix_turn _helix lactose operon repressor DO83_03270 SM00420 helix_turn_helix, Deoxyribose operon repressor DO83_03270 SM01134 DO83_03270 DO83_03305 SM00354 helix_turn _helix lactose operon repressor DO83_03340 SM00354 helix_turn _helix lactose operon repressor DO83_03345 SM00347 helix_turn_helix multiple antibiotic resistance protein DO83_03360 SM00882 Coenzyme A transferase DO83_03370 SM00893 Electron transfer flavoprotein domain DO83_03375 SM00893 Electron transfer flavoprotein domain DO83_03380 SM00893 Electron transfer flavoprotein domain DO83_03385 SM00893 Electron transfer flavoprotein domain DO83_03400 SM00640 Glycosyl hydrolases family 32 DO83_03410 SM00354 helix_turn _helix lactose operon repressor DO83_03445 SM00382 ATPases associated with a variety of cellular activities DO83_03575 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DO83_03650 SM00530 Helix-turn-helix XRE-family like proteins DO83_03685 SM00382 ATPases associated with a variety of cellular activities DO83_03760 SM00347 helix_turn_helix multiple antibiotic resistance protein DO83_03765 SM00481 DNA polymerase alpha chain like domain DO83_03820 SM00642 Alpha-amylase domain DO83_03840 SM00382 ATPases associated with a variety of cellular activities DO83_03845 SM00382 ATPases associated with a variety of cellular activities DO83_03850 SM00347 helix_turn_helix multiple antibiotic resistance protein DO83_03850 SM00529 Helix-turn-helix diphteria tox regulatory element DO83_03865 SM00382 ATPases associated with a variety of cellular activities DO83_03920 SM00357 Cold shock protein domain DO83_03945 SM00845 GatB domain DO83_03965 SM00640 Glycosyl hydrolases family 32 DO83_03975 SM00640 Glycosyl hydrolases family 32 DO83_03980 SM00354 helix_turn _helix lactose operon repressor DO83_03995 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain DO83_04005 SM00220 Serine/Threonine protein kinases, catalytic domain DO83_04005 SM00740 DO83_04005 DO83_04010 SM00331 Sigma factor PP2C-like phosphatases DO83_04010 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain DO83_04035 SM00487 DEAD-like helicases superfamily DO83_04035 SM00490 helicase superfamily c-terminal domain DO83_04050 SM00861 Transketolase, pyrimidine binding domain DO83_04065 SM00354 helix_turn _helix lactose operon repressor DO83_04075 SM01329 DO83_04075 DO83_04080 SM00345 helix_turn_helix gluconate operon transcriptional repressor DO83_04080 SM00866 DO83_04080 DO83_04085 SM01133 DO83_04085 DO83_04095 SM00902 Iron hydrogenase small subunit DO83_04095 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DO83_04100 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DO83_04115 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. DO83_04155 SM00382 ATPases associated with a variety of cellular activities DO83_04190 SM00635 Bacterial Ig-like domain 2 DO83_04320 SM01321 DO83_04320 DO83_04330 SM00635 Bacterial Ig-like domain 2 DO83_04385 SM00893 Electron transfer flavoprotein domain DO83_04390 SM00893 Electron transfer flavoprotein domain DO83_04395 SM00345 helix_turn_helix gluconate operon transcriptional repressor DO83_04395 SM00895 DO83_04395 DO83_04405 SM00465 GIY-YIG type nucleases (URI domain) DO83_04430 SM00563 Phosphate acyltransferases DO83_04455 SM00448 cheY-homologous receiver domain DO83_04455 SM00862 Transcriptional regulatory protein, C terminal DO83_04460 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DO83_04460 SM00387 Histidine kinase-like ATPases DO83_04460 SM00388 His Kinase A (phosphoacceptor) domain DO83_04510 SM00919 Malic enzyme, NAD binding domain DO83_04510 SM01274 DO83_04510 DO83_04515 SM00861 Transketolase, pyrimidine binding domain DO83_04570 SM00893 Electron transfer flavoprotein domain DO83_04575 SM00893 Electron transfer flavoprotein domain DO83_04600 SM00382 ATPases associated with a variety of cellular activities DO83_04605 SM00382 ATPases associated with a variety of cellular activities DO83_04615 SM00382 ATPases associated with a variety of cellular activities DO83_04635 SM00725 NEAr Transporter domain DO83_04645 SM00369 Leucine-rich repeats, typical (most populated) subfamily DO83_04660 SM00530 Helix-turn-helix XRE-family like proteins DO83_04675 SM01133 DO83_04675 DO83_04695 SM00028 Tetratricopeptide repeats DO83_04735 SM00363 S4 RNA-binding domain DO83_04740 SM00411 bacterial (prokaryotic) histone like domain DO83_04745 SM00316 Ribosomal protein S1-like RNA-binding domain DO83_04770 SM00529 Helix-turn-helix diphteria tox regulatory element DO83_04785 SM00899 DO83_04785 DO83_04790 SM00899 DO83_04790 DO83_04815 SM00271 DnaJ molecular chaperone homology domain DO83_04850 SM00382 ATPases associated with a variety of cellular activities DO83_04865 SM01118 DO83_04865 DO83_04885 SM00382 ATPases associated with a variety of cellular activities DO83_04920 SM00382 ATPases associated with a variety of cellular activities DO83_04985 SM00382 ATPases associated with a variety of cellular activities DO83_05030 SM00354 helix_turn _helix lactose operon repressor DO83_05035 SM00346 helix_turn_helix isocitrate lyase regulation DO83_05110 SM00382 ATPases associated with a variety of cellular activities DO83_05155 SM00646 DO83_05155 DO83_05175 SM01120 DO83_05175 DO83_05185 SM01007 Class II Aldolase and Adducin N-terminal domain DO83_05230 SM00422 helix_turn_helix, mercury resistance DO83_05235 SM00382 ATPases associated with a variety of cellular activities DO83_05265 SM00831 Cation transporter/ATPase, N-terminus DO83_05295 SM00530 Helix-turn-helix XRE-family like proteins DO83_05325 SM00838 Elongation factor G C-terminus DO83_05325 SM00889 Elongation factor G, domain IV DO83_05340 SM00663 RNA polymerase I subunit A N-terminus DO83_05365 SM00422 helix_turn_helix, mercury resistance DO83_05365 SM00857 Resolvase, N terminal domain DO83_05405 SM00649 Ribosomal protein L11/L12 DO83_05410 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. DO83_05440 SM00052 Putative diguanylate phosphodiesterase DO83_05440 SM00267 diguanylate cyclase DO83_05445 SM00876 Biotin and Thiamin Synthesis associated domain DO83_05460 SM00530 Helix-turn-helix XRE-family like proteins DO83_05465 SM00382 ATPases associated with a variety of cellular activities DO83_05475 SM00116 Domain in cystathionine beta-synthase and other proteins. DO83_05475 SM01131 DO83_05475 DO83_05480 SM00387 Histidine kinase-like ATPases DO83_05480 SM00388 His Kinase A (phosphoacceptor) domain DO83_05485 SM00448 cheY-homologous receiver domain DO83_05485 SM00862 Transcriptional regulatory protein, C terminal DO83_05500 SM00387 Histidine kinase-like ATPases DO83_05500 SM00388 His Kinase A (phosphoacceptor) domain DO83_05500 SM00448 cheY-homologous receiver domain DO83_05510 SM00387 Histidine kinase-like ATPases DO83_05510 SM00388 His Kinase A (phosphoacceptor) domain DO83_05510 SM00448 cheY-homologous receiver domain DO83_05515 SM00062 Bacterial periplasmic substrate-binding proteins DO83_05520 SM00387 Histidine kinase-like ATPases DO83_05520 SM00388 His Kinase A (phosphoacceptor) domain DO83_05520 SM00448 cheY-homologous receiver domain DO83_05540 SM00100 Cyclic nucleotide-monophosphate binding domain DO83_05575 SM00729 Elongator protein 3, MiaB family, Radical SAM DO83_05585 SM00347 helix_turn_helix multiple antibiotic resistance protein DO83_05615 SM00422 helix_turn_helix, mercury resistance DO83_05625 SM00530 Helix-turn-helix XRE-family like proteins DO83_05685 SM00530 Helix-turn-helix XRE-family like proteins DO83_05730 SM00382 ATPases associated with a variety of cellular activities DO83_05735 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DO83_05735 SM00387 Histidine kinase-like ATPases DO83_05735 SM00388 His Kinase A (phosphoacceptor) domain DO83_05740 SM00448 cheY-homologous receiver domain DO83_05740 SM00862 Transcriptional regulatory protein, C terminal DO83_05745 SM00448 cheY-homologous receiver domain DO83_05755 SM00382 ATPases associated with a variety of cellular activities DO83_05770 SM00387 Histidine kinase-like ATPases DO83_05770 SM00388 His Kinase A (phosphoacceptor) domain DO83_05775 SM00448 cheY-homologous receiver domain DO83_05775 SM00862 Transcriptional regulatory protein, C terminal DO83_05785 SM00862 Transcriptional regulatory protein, C terminal DO83_05805 SM00382 ATPases associated with a variety of cellular activities DO83_05810 SM00387 Histidine kinase-like ATPases DO83_05815 SM00448 cheY-homologous receiver domain DO83_05815 SM00862 Transcriptional regulatory protein, C terminal DO83_05845 SM00448 cheY-homologous receiver domain DO83_05845 SM00862 Transcriptional regulatory protein, C terminal DO83_05850 SM00382 ATPases associated with a variety of cellular activities DO83_05860 SM00387 Histidine kinase-like ATPases DO83_05860 SM00388 His Kinase A (phosphoacceptor) domain DO83_05910 SM00530 Helix-turn-helix XRE-family like proteins DO83_05960 SM00530 Helix-turn-helix XRE-family like proteins DO83_05965 SM00422 helix_turn_helix, mercury resistance DO83_05990 SM00382 ATPases associated with a variety of cellular activities DO83_05995 SM00345 helix_turn_helix gluconate operon transcriptional repressor DO83_06030 SM00487 DEAD-like helicases superfamily DO83_06030 SM00490 helicase superfamily c-terminal domain DO83_06060 SM00382 ATPases associated with a variety of cellular activities DO83_06090 SM00530 Helix-turn-helix XRE-family like proteins DO83_06240 SM00244 prohibitin homologues DO83_06250 SM00967 RNA 2'-O ribose methyltransferase substrate binding DO83_06270 SM00481 DNA polymerase alpha chain like domain DO83_06300 SM00060 Fibronectin type 3 domain DO83_06340 SM00278 Helix-hairpin-helix DNA-binding motif class 1 DO83_06340 SM00465 GIY-YIG type nucleases (URI domain) DO83_06375 SM00382 ATPases associated with a variety of cellular activities DO83_06380 SM00382 ATPases associated with a variety of cellular activities DO83_06385 SM00342 helix_turn_helix, arabinose operon control protein DO83_06425 SM00345 helix_turn_helix gluconate operon transcriptional repressor DO83_06425 SM00895 DO83_06425 DO83_06435 SM00257 Lysin motif DO83_06450 SM00420 helix_turn_helix, Deoxyribose operon repressor DO83_06450 SM01134 DO83_06450 DO83_06485 SM00829 Enoylreductase DO83_06495 SM00382 ATPases associated with a variety of cellular activities DO83_06505 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain DO83_06520 SM00382 ATPases associated with a variety of cellular activities DO83_06525 SM00382 ATPases associated with a variety of cellular activities DO83_06530 SM00347 helix_turn_helix multiple antibiotic resistance protein DO83_06535 SM00729 Elongator protein 3, MiaB family, Radical SAM DO83_06535 SM00876 Biotin and Thiamin Synthesis associated domain DO83_06545 SM01133 DO83_06545 DO83_06565 SM00422 helix_turn_helix, mercury resistance DO83_06610 SM00382 ATPases associated with a variety of cellular activities DO83_06625 SM00344 helix_turn_helix ASNC type DO83_06640 SM00479 DO83_06640 DO83_06660 SM00060 Fibronectin type 3 domain DO83_06670 SM00382 ATPases associated with a variety of cellular activities DO83_06675 SM00387 Histidine kinase-like ATPases DO83_06675 SM00388 His Kinase A (phosphoacceptor) domain DO83_06680 SM00448 cheY-homologous receiver domain DO83_06680 SM00862 Transcriptional regulatory protein, C terminal DO83_06690 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DO83_06695 SM00463 Small MutS-related domain DO83_06695 SM00533 DNA-binding domain of DNA mismatch repair MUTS family DO83_06695 SM00534 ATPase domain of DNA mismatch repair MUTS family DO83_06710 SM00267 diguanylate cyclase DO83_06775 SM00903 Flavin reductase like domain DO83_06785 SM00493 DO83_06785 DO83_06795 SM00382 ATPases associated with a variety of cellular activities DO83_06800 SM00387 Histidine kinase-like ATPases DO83_06810 SM00240 Forkhead associated domain DO83_06875 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DO83_06900 SM00382 ATPases associated with a variety of cellular activities DO83_06905 SM00345 helix_turn_helix gluconate operon transcriptional repressor DO83_06970 SM00354 helix_turn _helix lactose operon repressor DO83_07050 SM00257 Lysin motif DO83_07110 SM00635 Bacterial Ig-like domain 2 DO83_07120 SM00900 DO83_07120 DO83_07160 SM00420 helix_turn_helix, Deoxyribose operon repressor DO83_07160 SM01134 DO83_07160 DO83_07170 SM00382 ATPases associated with a variety of cellular activities DO83_07180 SM00481 DNA polymerase alpha chain like domain DO83_07185 SM00387 Histidine kinase-like ATPases DO83_07190 SM00448 cheY-homologous receiver domain DO83_07190 SM00862 Transcriptional regulatory protein, C terminal DO83_07205 SM00470 ParB-like nuclease domain DO83_07215 SM00836 DALR anticodon binding domain DO83_07215 SM01016 Arginyl tRNA synthetase N terminal dom DO83_07230 SM01228 DO83_07230 DO83_07250 SM01234 DO83_07250 DO83_07265 SM00382 ATPases associated with a variety of cellular activities DO83_07265 SM00760 Bacterial dnaA protein helix-turn-helix domain DO83_07270 SM00480 DNA polymerase III beta subunit DO83_07285 SM00387 Histidine kinase-like ATPases DO83_07285 SM00433 TopoisomeraseII DO83_07290 SM00434 DNA Topoisomerase IV DO83_07385 SM00966 SpoVT / AbrB like domain DO83_07405 SM00347 helix_turn_helix multiple antibiotic resistance protein DO83_07460 SM00650 Ribosomal RNA adenine dimethylases DO83_07475 SM00645 Papain family cysteine protease DO83_07480 SM00954 Region found in RelA / SpoT proteins DO83_07565 SM00478 endonuclease III DO83_07570 SM00062 Bacterial periplasmic substrate-binding proteins DO83_07580 SM00382 ATPases associated with a variety of cellular activities DO83_07590 SM00062 Bacterial periplasmic substrate-binding proteins DO83_07715 SM00422 helix_turn_helix, mercury resistance DO83_07720 SM00861 Transketolase, pyrimidine binding domain DO83_07760 SM00220 Serine/Threonine protein kinases, catalytic domain DO83_07790 SM00642 Alpha-amylase domain DO83_07835 SM00382 ATPases associated with a variety of cellular activities DO83_07855 SM00347 helix_turn_helix multiple antibiotic resistance protein DO83_07945 SM00450 Rhodanese Homology Domain DO83_08025 SM00862 Transcriptional regulatory protein, C terminal DO83_08030 SM00387 Histidine kinase-like ATPases DO83_08030 SM00388 His Kinase A (phosphoacceptor) domain DO83_08040 SM00287 Bacterial SH3 domain homologues DO83_08065 SM00851 MGS-like domain DO83_08065 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DO83_08100 SM00478 endonuclease III DO83_08105 SM00635 Bacterial Ig-like domain 2 DO83_08120 SM00460 Transglutaminase/protease-like homologues DO83_08150 SM00382 ATPases associated with a variety of cellular activities DO83_08160 SM01092 CO dehydrogenase flavoprotein C-terminal domain DO83_08170 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DO83_08195 SM00487 DEAD-like helicases superfamily DO83_08195 SM00490 helicase superfamily c-terminal domain DO83_08195 SM00982 DO83_08195 DO83_08195 SM01058 CarD-like/TRCF domain DO83_08240 SM01007 Class II Aldolase and Adducin N-terminal domain DO83_08265 SM00345 helix_turn_helix gluconate operon transcriptional repressor DO83_08265 SM00866 DO83_08265 DO83_08370 SM00387 Histidine kinase-like ATPases DO83_08370 SM00388 His Kinase A (phosphoacceptor) domain DO83_08375 SM00448 cheY-homologous receiver domain DO83_08375 SM00862 Transcriptional regulatory protein, C terminal DO83_08400 SM00382 ATPases associated with a variety of cellular activities DO83_08420 SM00271 DnaJ molecular chaperone homology domain DO83_08460 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain DO83_08475 SM00946 Prolyl-tRNA synthetase, C-terminal DO83_08505 SM00387 Histidine kinase-like ATPases DO83_08505 SM00388 His Kinase A (phosphoacceptor) domain DO83_08510 SM00448 cheY-homologous receiver domain DO83_08510 SM00862 Transcriptional regulatory protein, C terminal DO83_08515 SM00938 Nitrogen regulatory protein P-II DO83_08525 SM00938 Nitrogen regulatory protein P-II DO83_08610 SM00635 Bacterial Ig-like domain 2 DO83_08630 SM00448 cheY-homologous receiver domain DO83_08630 SM00850 LytTr DNA-binding domain DO83_08670 SM00890 Domain of unknown function DO83_08690 SM00382 ATPases associated with a variety of cellular activities DO83_08705 SM00829 Enoylreductase DO83_08760 SM00345 helix_turn_helix gluconate operon transcriptional repressor DO83_08765 SM00382 ATPases associated with a variety of cellular activities DO83_08805 SM00342 helix_turn_helix, arabinose operon control protein DO83_08855 SM00331 Sigma factor PP2C-like phosphatases DO83_08860 SM00977 TilS substrate C-terminal domain DO83_08870 SM00382 ATPases associated with a variety of cellular activities DO83_08900 SM00382 ATPases associated with a variety of cellular activities DO83_08910 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. DO83_08915 SM00822 DO83_08915 DO83_08920 SM00825 Beta-ketoacyl synthase DO83_08935 SM00878 Biotin carboxylase C-terminal domain DO83_08955 SM01403 DO83_08955 DO83_08975 SM01382 DO83_08975 DO83_08975 SM01383 DO83_08975 DO83_08990 SM00322 K homology RNA-binding domain DO83_09010 SM01374 DO83_09010 DO83_09015 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. DO83_09075 SM00316 Ribosomal protein S1-like RNA-binding domain DO83_09095 SM00363 S4 RNA-binding domain DO83_09095 SM01390 DO83_09095 DO83_09100 SM00662 RNA polymerases D DO83_09110 SM00382 ATPases associated with a variety of cellular activities DO83_09115 SM00382 ATPases associated with a variety of cellular activities DO83_09150 SM01192 DO83_09150 DO83_09150 SM01193 DO83_09150 DO83_09175 SM00849 Metallo-beta-lactamase superfamily DO83_09195 SM01059 Chloramphenicol acetyltransferase DO83_09205 SM00642 Alpha-amylase domain DO83_09220 SM00957 SecA DEAD-like domain DO83_09220 SM00958 SecA preprotein cross-linking domain DO83_09225 SM00937 DO83_09225 DO83_09250 SM00316 Ribosomal protein S1-like RNA-binding domain DO83_09250 SM00732 Likely ribonuclease with RNase H fold. DO83_09270 SM00382 ATPases associated with a variety of cellular activities DO83_09285 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. DO83_09285 SM00245 tail specific protease DO83_09350 SM00650 Ribosomal RNA adenine dimethylases DO83_09360 SM00530 Helix-turn-helix XRE-family like proteins DO83_09415 SM00530 Helix-turn-helix XRE-family like proteins DO83_09460 SM00487 DEAD-like helicases superfamily DO83_09460 SM00490 helicase superfamily c-terminal domain DO83_09470 SM00420 helix_turn_helix, Deoxyribose operon repressor DO83_09470 SM01134 DO83_09470 DO83_09485 SM00966 SpoVT / AbrB like domain DO83_09660 SM01120 DO83_09660 DO83_09665 SM00345 helix_turn_helix gluconate operon transcriptional repressor DO83_09670 SM00382 ATPases associated with a variety of cellular activities DO83_09715 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DO83_09825 SM00530 Helix-turn-helix XRE-family like proteins DO83_09835 SM01324 DO83_09835 DO83_09855 SM00857 Resolvase, N terminal domain DO83_09860 SM00530 Helix-turn-helix XRE-family like proteins DO83_09865 SM00292 breast cancer carboxy-terminal domain DO83_09865 SM00479 DO83_09865 DO83_09870 SM00530 Helix-turn-helix XRE-family like proteins DO83_09925 SM00990 DO83_09925 DO83_10065 SM00257 Lysin motif DO83_10155 SM00947 Carbonic anhydrase DO83_10160 SM00646 DO83_10160 DO83_10175 SM00857 Resolvase, N terminal domain DO83_10190 SM00382 ATPases associated with a variety of cellular activities DO83_10205 SM00642 Alpha-amylase domain DO83_10210 SM00322 K homology RNA-binding domain DO83_10210 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DO83_10240 SM00855 Phosphoglycerate mutase family DO83_10270 SM00331 Sigma factor PP2C-like phosphatases DO83_10270 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain DO83_10275 SM00220 Serine/Threonine protein kinases, catalytic domain DO83_10285 SM00316 Ribosomal protein S1-like RNA-binding domain DO83_10300 SM01323 DO83_10300 DO83_10305 SM00481 DNA polymerase alpha chain like domain DO83_10390 SM00849 Metallo-beta-lactamase superfamily DO83_10390 SM01027 Beta-Casp domain DO83_10395 SM00363 S4 RNA-binding domain DO83_10400 SM00278 Helix-hairpin-helix DNA-binding motif class 1 DO83_10400 SM00292 breast cancer carboxy-terminal domain DO83_10400 SM00532 Ligase N family DO83_10420 SM00028 Tetratricopeptide repeats DO83_10430 SM00387 Histidine kinase-like ATPases DO83_10440 SM00357 Cold shock protein domain DO83_10440 SM00382 ATPases associated with a variety of cellular activities DO83_10440 SM00959 Rho termination factor, N-terminal domain DO83_10460 SM00937 DO83_10460 DO83_10475 SM00387 Histidine kinase-like ATPases DO83_10480 SM00421 helix_turn_helix, Lux Regulon DO83_10480 SM00448 cheY-homologous receiver domain DO83_10515 SM00635 Bacterial Ig-like domain 2 DO83_10515 SM00640 Glycosyl hydrolases family 32 DO83_10545 SM00448 cheY-homologous receiver domain DO83_10545 SM00862 Transcriptional regulatory protein, C terminal DO83_10550 SM00387 Histidine kinase-like ATPases DO83_10550 SM00388 His Kinase A (phosphoacceptor) domain DO83_10565 SM00998 Adenylosuccinate lyase C-terminus DO83_10585 SM00267 diguanylate cyclase DO83_10600 SM00729 Elongator protein 3, MiaB family, Radical SAM DO83_10630 SM00635 Bacterial Ig-like domain 2 DO83_10635 SM00635 Bacterial Ig-like domain 2 DO83_10660 SM00448 cheY-homologous receiver domain DO83_10660 SM00850 LytTr DNA-binding domain DO83_10680 SM00530 Helix-turn-helix XRE-family like proteins DO83_10695 SM00518 AP endonuclease family 2 DO83_10705 SM00986 Uracil DNA glycosylase superfamily DO83_10705 SM00987 UreE urease accessory protein, C-terminal domain DO83_10725 SM01264 DO83_10725 DO83_10740 SM00530 Helix-turn-helix XRE-family like proteins DO83_10790 SM00382 ATPases associated with a variety of cellular activities DO83_10800 SM00448 cheY-homologous receiver domain DO83_10800 SM00862 Transcriptional regulatory protein, C terminal DO83_10805 SM00387 Histidine kinase-like ATPases DO83_10805 SM00388 His Kinase A (phosphoacceptor) domain DO83_10810 SM00047 Lysozyme subfamily 2 DO83_10815 SM00062 Bacterial periplasmic substrate-binding proteins DO83_10825 SM00382 ATPases associated with a variety of cellular activities DO83_10855 SM00954 Region found in RelA / SpoT proteins DO83_10900 SM01007 Class II Aldolase and Adducin N-terminal domain DO83_10905 SM00849 Metallo-beta-lactamase superfamily DO83_10930 SM00387 Histidine kinase-like ATPases DO83_10930 SM00388 His Kinase A (phosphoacceptor) domain DO83_10930 SM00448 cheY-homologous receiver domain DO83_10935 SM00421 helix_turn_helix, Lux Regulon DO83_10935 SM00448 cheY-homologous receiver domain DO83_10945 SM00796 Allophanate hydrolase subunit 1 DO83_10950 SM00797 Allophanate hydrolase subunit 2 DO83_10960 SM00878 Biotin carboxylase C-terminal domain DO83_10985 SM00382 ATPases associated with a variety of cellular activities DO83_10985 SM01086 C-terminal, D2-small domain, of ClpB protein DO83_11010 SM00986 Uracil DNA glycosylase superfamily DO83_11010 SM00987 UreE urease accessory protein, C-terminal domain DO83_11025 SM00046 Diacylglycerol kinase catalytic domain (presumed) DO83_11045 SM00450 Rhodanese Homology Domain DO83_11050 SM00981 DO83_11050 DO83_11090 SM00382 ATPases associated with a variety of cellular activities DO83_11100 SM00448 cheY-homologous receiver domain DO83_11100 SM00862 Transcriptional regulatory protein, C terminal DO83_11105 SM00388 His Kinase A (phosphoacceptor) domain DO83_11125 SM00342 helix_turn_helix, arabinose operon control protein DO83_11140 SM01038 Beta galactosidase small chain DO83_11150 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DO83_11170 SM00226 Low molecular weight phosphatase family DO83_11200 SM00116 Domain in cystathionine beta-synthase and other proteins. DO83_11200 SM00924 MgtE intracellular N domain DO83_11225 SM00345 helix_turn_helix gluconate operon transcriptional repressor DO83_11230 SM00382 ATPases associated with a variety of cellular activities DO83_11230 SM01086 C-terminal, D2-small domain, of ClpB protein DO83_11285 SM00448 cheY-homologous receiver domain DO83_11285 SM00862 Transcriptional regulatory protein, C terminal DO83_11290 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DO83_11290 SM00387 Histidine kinase-like ATPases DO83_11290 SM00388 His Kinase A (phosphoacceptor) domain DO83_11335 SM00257 Lysin motif DO83_11385 SM01120 DO83_11385 DO83_11385 SM01121 DO83_11385 DO83_11390 SM00487 DEAD-like helicases superfamily DO83_11390 SM00490 helicase superfamily c-terminal domain DO83_11455 SM00358 Double-stranded RNA binding motif DO83_11455 SM00535 Ribonuclease III family DO83_11465 SM00382 ATPases associated with a variety of cellular activities DO83_11465 SM00962 SRP54-type protein, GTPase domain DO83_11465 SM00963 SRP54-type protein, helical bundle domain DO83_11475 SM00642 Alpha-amylase domain DO83_11500 SM00642 Alpha-amylase domain DO83_11510 SM00729 Elongator protein 3, MiaB family, Radical SAM DO83_11515 SM00533 DNA-binding domain of DNA mismatch repair MUTS family DO83_11515 SM00534 ATPase domain of DNA mismatch repair MUTS family DO83_11520 SM00853 MutL C terminal dimerisation domain DO83_11520 SM01340 DO83_11520 DO83_11585 SM00851 MGS-like domain DO83_11595 SM00729 Elongator protein 3, MiaB family, Radical SAM DO83_11615 SM00363 S4 RNA-binding domain DO83_11635 SM00363 S4 RNA-binding domain DO83_11645 SM01387 DO83_11645 DO83_11650 SM00316 Ribosomal protein S1-like RNA-binding domain DO83_11650 SM00322 K homology RNA-binding domain DO83_11655 SM01321 DO83_11655 DO83_11695 SM00849 Metallo-beta-lactamase superfamily DO83_11705 SM00028 Tetratricopeptide repeats DO83_11740 SM00822 DO83_11740 DO83_11755 SM01061 CAT RNA binding domain DO83_11930 SM01211 DO83_11930 DO83_11940 SM00116 Domain in cystathionine beta-synthase and other proteins. DO83_11940 SM01091 Transporter associated domain DO83_11965 SM00345 helix_turn_helix gluconate operon transcriptional repressor DO83_11970 SM00382 ATPases associated with a variety of cellular activities DO83_11970 SM01086 C-terminal, D2-small domain, of ClpB protein DO83_11980 SM00382 ATPases associated with a variety of cellular activities DO83_12000 SM00883 Chaperonin 10 Kd subunit DO83_12040 SM00116 Domain in cystathionine beta-synthase and other proteins. DO83_12040 SM01240 DO83_12040 DO83_12085 SM01061 CAT RNA binding domain DO83_12115 SM01007 Class II Aldolase and Adducin N-terminal domain DO83_12140 SM00155 Phospholipase D. Active site motifs. DO83_12160 SM00267 diguanylate cyclase DO83_12160 SM00387 Histidine kinase-like ATPases DO83_12160 SM00388 His Kinase A (phosphoacceptor) domain DO83_12160 SM00448 cheY-homologous receiver domain DO83_12225 SM00062 Bacterial periplasmic substrate-binding proteins DO83_12225 SM00387 Histidine kinase-like ATPases DO83_12225 SM00388 His Kinase A (phosphoacceptor) domain DO83_12305 SM00226 Low molecular weight phosphatase family DO83_12325 SM00345 helix_turn_helix gluconate operon transcriptional repressor DO83_12340 SM01007 Class II Aldolase and Adducin N-terminal domain DO83_12350 SM00342 helix_turn_helix, arabinose operon control protein DO83_12350 SM00448 cheY-homologous receiver domain DO83_12355 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DO83_12355 SM00387 Histidine kinase-like ATPases DO83_12365 SM00382 ATPases associated with a variety of cellular activities DO83_12385 SM00342 helix_turn_helix, arabinose operon control protein DO83_12410 SM01321 DO83_12410 DO83_12415 SM00354 helix_turn _helix lactose operon repressor DO83_12445 SM00382 ATPases associated with a variety of cellular activities DO83_12450 SM00382 ATPases associated with a variety of cellular activities DO83_12465 SM00341 Helicase and RNase D C-terminal DO83_12465 SM00487 DEAD-like helicases superfamily DO83_12465 SM00490 helicase superfamily c-terminal domain DO83_12465 SM00956 DO83_12465 DO83_12515 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain DO83_12520 SM00851 MGS-like domain DO83_12520 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DO83_12520 SM01209 DO83_12520 DO83_12525 SM01230 DO83_12525 DO83_12545 SM00798 AICARFT/IMPCHase bienzyme DO83_12560 SM01321 DO83_12560 DO83_12645 SM00864 Tubulin/FtsZ family, GTPase domain DO83_12645 SM00865 Tubulin/FtsZ family, C-terminal domain DO83_12650 SM00729 Elongator protein 3, MiaB family, Radical SAM DO83_12655 SM00838 Elongation factor G C-terminus DO83_12670 SM01130 DO83_12670 DO83_12690 SM00448 cheY-homologous receiver domain DO83_12690 SM00850 LytTr DNA-binding domain DO83_12820 SM00382 ATPases associated with a variety of cellular activities DO83_12820 SM00994 ClpX C4-type zinc finger DO83_12820 SM01086 C-terminal, D2-small domain, of ClpB protein DO83_12825 SM00382 ATPases associated with a variety of cellular activities DO83_12825 SM00464 Found in ATP-dependent protease La (LON) DO83_12835 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DO83_12845 SM00905 Dihydroneopterin aldolase DO83_12850 SM00830 Chorismate mutase type II DO83_12860 SM00788 Adenylosuccinate synthetase DO83_12905 SM00481 DNA polymerase alpha chain like domain DO83_12920 SM00382 ATPases associated with a variety of cellular activities DO83_12945 SM00936 Penicillin-binding protein 5, C-terminal domain DO83_12950 SM00822 DO83_12950 DO83_12955 SM00420 helix_turn_helix, Deoxyribose operon repressor DO83_13025 SM00893 Electron transfer flavoprotein domain DO83_13030 SM00893 Electron transfer flavoprotein domain DO83_13055 SM00936 Penicillin-binding protein 5, C-terminal domain DO83_13150 SM00460 Transglutaminase/protease-like homologues DO83_13165 SM00316 Ribosomal protein S1-like RNA-binding domain DO83_13190 SM01103 DO83_13190 DO83_13200 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DO83_13220 SM00646 DO83_13220 DO83_13225 SM00646 DO83_13225 DO83_13240 SM01329 DO83_13240 DO83_13265 SM00859 Semialdehyde dehydrogenase, NAD binding domain DO83_13365 SM00981 DO83_13365 DO83_13375 SM00729 Elongator protein 3, MiaB family, Radical SAM DO83_13385 SM00732 Likely ribonuclease with RNase H fold. DO83_13395 SM00849 Metallo-beta-lactamase superfamily DO83_13430 SM00530 Helix-turn-helix XRE-family like proteins DO83_13490 SM00507 HNH nucleases DO83_13505 SM00448 cheY-homologous receiver domain DO83_13505 SM00862 Transcriptional regulatory protein, C terminal DO83_13510 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DO83_13510 SM00387 Histidine kinase-like ATPases DO83_13510 SM00388 His Kinase A (phosphoacceptor) domain DO83_13520 SM00347 helix_turn_helix multiple antibiotic resistance protein DO83_13595 SM00830 Chorismate mutase type II DO83_13605 SM00841 Elongation factor P, C-terminal DO83_13605 SM01185 DO83_13605 DO83_13645 SM00382 ATPases associated with a variety of cellular activities DO83_13705 SM00062 Bacterial periplasmic substrate-binding proteins DO83_13710 SM00382 ATPases associated with a variety of cellular activities DO83_13760 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain DO83_13835 SM00900 DO83_13835 DO83_13865 SM00382 ATPases associated with a variety of cellular activities DO83_13875 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain DO83_13875 SM00437 Bacterial DNA topoisomerase I DNA-binding domain DO83_13875 SM00493 DO83_13875 DO83_13900 SM00470 ParB-like nuclease domain DO83_14065 SM00635 Bacterial Ig-like domain 2 DO83_14135 SM00857 Resolvase, N terminal domain DO83_14160 SM00487 DEAD-like helicases superfamily DO83_14160 SM00490 helicase superfamily c-terminal domain DO83_14330 SM00530 Helix-turn-helix XRE-family like proteins DO83_14360 SM00893 Electron transfer flavoprotein domain DO83_14365 SM00893 Electron transfer flavoprotein domain DO83_14405 SM01004 Delta-aminolevulinic acid dehydratase DO83_14425 SM00014 Acid phosphatase homologues DO83_14445 SM00729 Elongator protein 3, MiaB family, Radical SAM DO83_14455 SM00852 Probable molybdopterin binding domain DO83_14465 SM00382 ATPases associated with a variety of cellular activities DO83_14475 SM00852 Probable molybdopterin binding domain DO83_14520 SM00345 helix_turn_helix gluconate operon transcriptional repressor DO83_14525 SM00382 ATPases associated with a variety of cellular activities DO83_14550 SM00448 cheY-homologous receiver domain DO83_14550 SM00850 LytTr DNA-binding domain DO83_14585 SM00530 Helix-turn-helix XRE-family like proteins DO83_14590 SM00889 Elongation factor G, domain IV DO83_14630 SM00530 Helix-turn-helix XRE-family like proteins DO83_14655 SM00382 ATPases associated with a variety of cellular activities DO83_14700 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain DO83_14700 SM00437 Bacterial DNA topoisomerase I DNA-binding domain DO83_14700 SM00493 DO83_14700 DO83_14780 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DO83_14780 SM00954 Region found in RelA / SpoT proteins DO83_14785 SM00849 Metallo-beta-lactamase superfamily DO83_14790 SM00729 Elongator protein 3, MiaB family, Radical SAM DO83_14795 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DO83_14835 SM00342 helix_turn_helix, arabinose operon control protein DO83_14845 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain DO83_14845 SM00437 Bacterial DNA topoisomerase I DNA-binding domain DO83_14845 SM00493 DO83_14845 DO83_14850 SM00382 ATPases associated with a variety of cellular activities DO83_14915 SM00487 DEAD-like helicases superfamily DO83_14915 SM00490 helicase superfamily c-terminal domain DO83_14985 SM00382 ATPases associated with a variety of cellular activities DO83_15070 SM01321 DO83_15070 DO83_15120 SM00882 Coenzyme A transferase DO83_15125 SM00882 Coenzyme A transferase DO83_15155 SM00382 ATPases associated with a variety of cellular activities DO83_15255 SM00382 ATPases associated with a variety of cellular activities DO83_15265 SM00899 DO83_15265 DO83_15290 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain DO83_15310 SM00729 Elongator protein 3, MiaB family, Radical SAM