locus-tag class description CPRO_00010 PF11638 DnaA N-terminal domain CPRO_00010 PF08299 Bacterial dnaA protein helix-turn-helix CPRO_00010 PF00308 Bacterial dnaA protein CPRO_00020 PF02768 DNA polymerase III beta subunit, C-terminal domain CPRO_00020 PF00712 DNA polymerase III beta subunit, N-terminal domain CPRO_00020 PF02767 DNA polymerase III beta subunit, central domain CPRO_00040 PF02463 RecF/RecN/SMC N terminal domain CPRO_00050 PF00204 DNA gyrase B CPRO_00050 PF00986 DNA gyrase B subunit, carboxyl terminus CPRO_00050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPRO_00050 PF01751 Toprim domain CPRO_00060 PF03989 DNA gyrase C-terminal domain, beta-propeller CPRO_00060 PF00521 DNA gyrase/topoisomerase IV, subunit A CPRO_00120 PF00781 Diacylglycerol kinase catalytic domain CPRO_00130 PF13614 AAA domain CPRO_00140 PF17762 HTH domain found in ParB protein CPRO_00140 PF02195 ParB-like nuclease domain CPRO_00170 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CPRO_00170 PF02403 Seryl-tRNA synthetase N-terminal domain CPRO_00190 PF00893 Small Multidrug Resistance protein CPRO_00210 PF00294 pfkB family carbohydrate kinase CPRO_00230 PF12116 Stage III sporulation protein D CPRO_00250 PF01880 Desulfoferrodoxin CPRO_00250 PF06397 Desulfoferrodoxin, N-terminal domain CPRO_00260 PF00258 Flavodoxin CPRO_00260 PF00753 Metallo-beta-lactamase superfamily CPRO_00270 PF02915 Rubrerythrin CPRO_00280 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CPRO_00280 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CPRO_00280 PF02142 MGS-like domain CPRO_00290 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CPRO_00290 PF00117 Glutamine amidotransferase class-I CPRO_00300 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CPRO_00300 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CPRO_00310 PF00202 Aminotransferase class-III CPRO_00320 PF00696 Amino acid kinase family CPRO_00330 PF01960 ArgJ family CPRO_00340 PF01118 Semialdehyde dehydrogenase, NAD binding domain CPRO_00350 PF00248 Aldo/keto reductase family CPRO_00360 PF01070 FMN-dependent dehydrogenase CPRO_00390 PF01625 Peptide methionine sulfoxide reductase CPRO_00390 PF01641 SelR domain CPRO_00400 PF00795 Carbon-nitrogen hydrolase CPRO_00410 PF00209 Sodium:neurotransmitter symporter family CPRO_00420 PF03313 Serine dehydratase alpha chain CPRO_00430 PF01235 Sodium:alanine symporter family CPRO_00470 PF00478 IMP dehydrogenase / GMP reductase domain CPRO_00470 PF00571 CBS domain CPRO_00510 PF00690 Cation transporter/ATPase, N-terminus CPRO_00510 PF00689 Cation transporting ATPase, C-terminus CPRO_00520 PF09371 Tex-like protein N-terminal domain CPRO_00520 PF17674 HHH domain CPRO_00520 PF00575 S1 RNA binding domain CPRO_00520 PF16921 Tex protein YqgF-like domain CPRO_00540 PF01381 Helix-turn-helix CPRO_00570 PF01250 Ribosomal protein S6 CPRO_00580 PF00436 Single-strand binding protein family CPRO_00590 PF01084 Ribosomal protein S18 CPRO_00600 PF12822 ECF transporter, substrate-specific component CPRO_00610 PF07478 D-ala D-ala ligase C-terminus CPRO_00610 PF01820 D-ala D-ala ligase N-terminus CPRO_00620 PF01177 Asp/Glu/Hydantoin racemase CPRO_00630 PF00072 Response regulator receiver domain CPRO_00650 PF00085 Thioredoxin CPRO_00670 PF02652 L-lactate permease CPRO_00680 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CPRO_00680 PF00056 lactate/malate dehydrogenase, NAD binding domain CPRO_00700 PF00004 ATPase family associated with various cellular activities (AAA) CPRO_00700 PF17862 AAA+ lid domain CPRO_00700 PF01434 Peptidase family M41 CPRO_00710 PF18277 AbrB C-terminal domain CPRO_00710 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CPRO_00730 PF07670 Nucleoside recognition CPRO_00750 PF14437 MafB19-like deaminase CPRO_00770 PF12169 DNA polymerase III subunits gamma and tau domain III CPRO_00820 PF03070 TENA/THI-4/PQQC family CPRO_00830 PF00005 ABC transporter CPRO_00840 PF00528 Binding-protein-dependent transport system inner membrane component CPRO_00850 PF09084 NMT1/THI5 like CPRO_00910 PF03323 Bacillus/Clostridium GerA spore germination protein CPRO_00940 PF09551 Stage II sporulation protein R (spore_II_R) CPRO_00960 PF02142 MGS-like domain CPRO_00970 PF01098 Cell cycle protein CPRO_00980 PF03776 Septum formation topological specificity factor MinE CPRO_00990 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CPRO_01010 PF00905 Penicillin binding protein transpeptidase domain CPRO_01010 PF03717 Penicillin-binding Protein dimerisation domain CPRO_01030 PF04085 rod shape-determining protein MreC CPRO_01060 PF04060 Putative Fe-S cluster CPRO_01060 PF13187 4Fe-4S dicluster domain CPRO_01060 PF00037 4Fe-4S binding domain CPRO_01070 PF02508 Rnf-Nqr subunit, membrane protein CPRO_01080 PF02508 Rnf-Nqr subunit, membrane protein CPRO_01100 PF03116 NQR2, RnfD, RnfE family CPRO_01110 PF10531 SLBB domain CPRO_01110 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CPRO_01110 PF13375 RnfC Barrel sandwich hybrid domain CPRO_01110 PF13237 4Fe-4S dicluster domain CPRO_01120 PF04963 Sigma-54 factor, core binding domain CPRO_01120 PF04552 Sigma-54, DNA binding domain CPRO_01120 PF00309 Sigma-54 factor, Activator interacting domain (AID) CPRO_01130 PF00155 Aminotransferase class I and II CPRO_01130 PF00392 Bacterial regulatory proteins, gntR family CPRO_01150 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CPRO_01150 PF01411 tRNA synthetases class II (A) CPRO_01150 PF02272 DHHA1 domain CPRO_01170 PF05525 Branched-chain amino acid transport protein CPRO_01200 PF00082 Subtilase family CPRO_01230 PF02110 Hydroxyethylthiazole kinase family CPRO_01240 PF02581 Thiamine monophosphate synthase CPRO_01250 PF00392 Bacterial regulatory proteins, gntR family CPRO_01250 PF07729 FCD domain CPRO_01260 PF03480 Bacterial extracellular solute-binding protein, family 7 CPRO_01280 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CPRO_01290 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CPRO_01300 PF00082 Subtilase family CPRO_01340 PF00149 Calcineurin-like phosphoesterase CPRO_01350 PF01966 HD domain CPRO_01350 PF13286 Phosphohydrolase-associated domain CPRO_01360 PF01807 CHC2 zinc finger CPRO_01360 PF08275 DNA primase catalytic core, N-terminal domain CPRO_01360 PF10410 DnaB-helicase binding domain of primase CPRO_01370 PF03979 Sigma-70 factor, region 1.1 CPRO_01370 PF00140 Sigma-70 factor, region 1.2 CPRO_01370 PF04545 Sigma-70, region 4 CPRO_01370 PF04542 Sigma-70 region 2 CPRO_01370 PF04539 Sigma-70 region 3 CPRO_01380 PF04816 tRNA (adenine(22)-N(1))-methyltransferase CPRO_01390 PF01784 NIF3 (NGG1p interacting factor 3) CPRO_01400 PF02824 TGS domain CPRO_01400 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CPRO_01400 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CPRO_01400 PF03129 Anticodon binding domain CPRO_01430 PF00589 Phage integrase family CPRO_01560 PF00589 Phage integrase family CPRO_01560 PF13495 Phage integrase, N-terminal SAM-like domain CPRO_01590 PF00484 Carbonic anhydrase CPRO_01630 PF01594 AI-2E family transporter CPRO_01640 PF13492 GAF domain CPRO_01640 PF07694 5TMR of 5TMR-LYT CPRO_01640 PF06580 Histidine kinase CPRO_01640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPRO_01650 PF00072 Response regulator receiver domain CPRO_01650 PF04397 LytTr DNA-binding domain CPRO_01660 PF02554 Carbon starvation protein CstA CPRO_01670 PF00749 tRNA synthetases class I (E and Q), catalytic domain CPRO_01680 PF17785 PUA-like domain CPRO_01680 PF10672 S-adenosylmethionine-dependent methyltransferase CPRO_01690 PF01048 Phosphorylase superfamily CPRO_01700 PF03553 Na+/H+ antiporter family CPRO_01720 PF01261 Xylose isomerase-like TIM barrel CPRO_01730 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CPRO_01730 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CPRO_01740 PF12822 ECF transporter, substrate-specific component CPRO_01760 PF00005 ABC transporter CPRO_01760 PF08402 TOBE domain CPRO_01770 PF01458 Uncharacterized protein family (UPF0051) CPRO_01780 PF10502 Signal peptidase, peptidase S26 CPRO_01830 PF16326 ABC transporter C-terminal domain CPRO_01830 PF00005 ABC transporter CPRO_01830 PF12848 ABC transporter CPRO_01840 PF06971 Putative DNA-binding protein N-terminus CPRO_01840 PF02629 CoA binding domain CPRO_01860 PF01554 MatE CPRO_01870 PF09278 MerR, DNA binding CPRO_01870 PF00376 MerR family regulatory protein CPRO_01880 PF00005 ABC transporter CPRO_01890 PF00005 ABC transporter CPRO_01890 PF12399 Branched-chain amino acid ATP-binding cassette transporter CPRO_01900 PF02653 Branched-chain amino acid transport system / permease component CPRO_01900 PF11862 Domain of unknown function (DUF3382) CPRO_01910 PF02653 Branched-chain amino acid transport system / permease component CPRO_01930 PF00303 Thymidylate synthase CPRO_01940 PF00186 Dihydrofolate reductase CPRO_01950 PF12627 Probable RNA and SrmB- binding site of polymerase A CPRO_01950 PF01743 Poly A polymerase head domain CPRO_01950 PF13735 tRNA nucleotidyltransferase domain 2 putative CPRO_01990 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CPRO_01990 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CPRO_01990 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CPRO_01990 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CPRO_02000 PF00474 Sodium:solute symporter family CPRO_02010 PF00440 Bacterial regulatory proteins, tetR family CPRO_02010 PF08361 MAATS-type transcriptional repressor, C-terminal region CPRO_02070 PF01925 Sulfite exporter TauE/SafE CPRO_02080 PF01925 Sulfite exporter TauE/SafE CPRO_02100 PF02446 4-alpha-glucanotransferase CPRO_02110 PF00733 Asparagine synthase CPRO_02110 PF13537 Glutamine amidotransferase domain CPRO_02140 PF00465 Iron-containing alcohol dehydrogenase CPRO_02150 PF06071 Protein of unknown function (DUF933) CPRO_02150 PF01926 50S ribosome-binding GTPase CPRO_02210 PF08486 Stage II sporulation protein CPRO_02230 PF01661 Macro domain CPRO_02240 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus CPRO_02240 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CPRO_02250 PF00265 Thymidine kinase CPRO_02270 PF02386 Cation transport protein CPRO_02280 PF02080 TrkA-C domain CPRO_02280 PF02254 TrkA-N domain CPRO_02290 PF02810 SEC-C motif CPRO_02290 PF07516 SecA Wing and Scaffold domain CPRO_02290 PF07517 SecA DEAD-like domain CPRO_02290 PF01043 SecA preprotein cross-linking domain CPRO_02310 PF03462 PCRF domain CPRO_02310 PF00472 RF-1 domain CPRO_02320 PF00849 RNA pseudouridylate synthase CPRO_02320 PF01479 S4 domain CPRO_02330 PF00483 Nucleotidyl transferase CPRO_02360 PF04452 RNA methyltransferase CPRO_02370 PF00266 Aminotransferase class-V CPRO_02380 PF02926 THUMP domain CPRO_02380 PF02568 Thiamine biosynthesis protein (ThiI) CPRO_02410 PF01476 LysM domain CPRO_02410 PF06725 3D domain CPRO_02420 PF01026 TatD related DNase CPRO_02430 PF01588 Putative tRNA binding domain CPRO_02430 PF09334 tRNA synthetases class I (M) CPRO_02430 PF08264 Anticodon-binding domain of tRNA CPRO_02440 PF02073 Thermophilic metalloprotease (M29) CPRO_02490 PF00672 HAMP domain CPRO_02490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CPRO_02490 PF02203 Tar ligand binding domain homologue CPRO_02500 PF00291 Pyridoxal-phosphate dependent enzyme CPRO_02520 PF01740 STAS domain CPRO_02520 PF00916 Sulfate permease family CPRO_02560 PF02608 ABC transporter substrate-binding protein PnrA-like CPRO_02600 PF01554 MatE CPRO_02610 PF04748 Divergent polysaccharide deacetylase CPRO_02620 PF03838 Recombination protein U CPRO_02630 PF01523 Putative modulator of DNA gyrase CPRO_02640 PF01523 Putative modulator of DNA gyrase CPRO_02660 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CPRO_02660 PF00753 Metallo-beta-lactamase superfamily CPRO_02660 PF10996 Beta-Casp domain CPRO_02670 PF02806 Alpha amylase, C-terminal all-beta domain CPRO_02670 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CPRO_02670 PF00128 Alpha amylase, catalytic domain CPRO_02690 PF09424 Yqey-like protein CPRO_02720 PF00005 ABC transporter CPRO_02730 PF07873 YabP family CPRO_02750 PF02562 PhoH-like protein CPRO_02760 PF01966 HD domain CPRO_02760 PF07698 7TM receptor with intracellular HD hydrolase CPRO_02760 PF07697 7TM-HD extracellular CPRO_02770 PF02130 Uncharacterized protein family UPF0054 CPRO_02780 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CPRO_02790 PF03167 Uracil DNA glycosylase superfamily CPRO_02810 PF01926 50S ribosome-binding GTPase CPRO_02810 PF07650 KH domain CPRO_02860 PF00302 Chloramphenicol acetyltransferase CPRO_02870 PF00391 PEP-utilising enzyme, mobile domain CPRO_02870 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CPRO_02870 PF02896 PEP-utilising enzyme, TIM barrel domain CPRO_02890 PF00460 Flagella basal body rod protein CPRO_02890 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CPRO_02900 PF02049 Flagellar hook-basal body complex protein FliE CPRO_02920 PF14842 FliG N-terminal domain CPRO_02920 PF14841 FliG middle domain CPRO_02920 PF01706 FliG C-terminal domain CPRO_02940 PF02874 ATP synthase alpha/beta family, beta-barrel domain CPRO_02940 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CPRO_02940 PF18269 T3SS EscN ATPase C-terminal domain CPRO_02980 PF16868 NMT1-like family CPRO_03010 PF13411 MerR HTH family regulatory protein CPRO_03010 PF07739 TipAS antibiotic-recognition domain CPRO_03030 PF01381 Helix-turn-helix CPRO_03060 PF00689 Cation transporting ATPase, C-terminus CPRO_03060 PF00690 Cation transporter/ATPase, N-terminus CPRO_03070 PF00155 Aminotransferase class I and II CPRO_03090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CPRO_03100 PF00588 SpoU rRNA Methylase family CPRO_03110 PF01475 Ferric uptake regulator family CPRO_03140 PF00486 Transcriptional regulatory protein, C terminal CPRO_03140 PF00072 Response regulator receiver domain CPRO_03150 PF00512 His Kinase A (phospho-acceptor) domain CPRO_03150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPRO_03170 PF03477 ATP cone domain CPRO_03170 PF13597 Anaerobic ribonucleoside-triphosphate reductase CPRO_03190 PF03477 ATP cone domain CPRO_03230 PF13361 UvrD-like helicase C-terminal domain CPRO_03230 PF12705 PD-(D/E)XK nuclease superfamily CPRO_03230 PF00580 UvrD/REP helicase N-terminal domain CPRO_03270 PF18665 Tetracyclin repressor-like, C-terminal domain CPRO_03270 PF00440 Bacterial regulatory proteins, tetR family CPRO_03310 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CPRO_03320 PF00814 Glycoprotease family CPRO_03330 PF00583 Acetyltransferase (GNAT) family CPRO_03340 PF05362 Lon protease (S16) C-terminal proteolytic domain CPRO_03340 PF13654 AAA domain CPRO_03360 PF01520 N-acetylmuramoyl-L-alanine amidase CPRO_03360 PF04122 Putative cell wall binding repeat 2 CPRO_03380 PF01138 3' exoribonuclease family, domain 1 CPRO_03380 PF03725 3' exoribonuclease family, domain 2 CPRO_03390 PF01725 Ham1 family CPRO_03490 PF01255 Putative undecaprenyl diphosphate synthase CPRO_03500 PF01432 Peptidase family M3 CPRO_03500 PF08439 Oligopeptidase F CPRO_03510 PF08323 Starch synthase catalytic domain CPRO_03510 PF00534 Glycosyl transferases group 1 CPRO_03600 PF01184 GPR1/FUN34/yaaH family CPRO_03620 PF01381 Helix-turn-helix CPRO_03630 PF00302 Chloramphenicol acetyltransferase CPRO_03640 PF01022 Bacterial regulatory protein, arsR family CPRO_03660 PF00571 CBS domain CPRO_03660 PF02833 DHHA2 domain CPRO_03660 PF07085 DRTGG domain CPRO_03660 PF01368 DHH family CPRO_03670 PF01416 tRNA pseudouridine synthase CPRO_03710 PF01380 SIS domain CPRO_03750 PF00005 ABC transporter CPRO_03770 PF02421 Ferrous iron transport protein B CPRO_03770 PF17910 FeoB cytosolic helical domain CPRO_03770 PF07670 Nucleoside recognition CPRO_03770 PF07664 Ferrous iron transport protein B C terminus CPRO_03770 PF04023 FeoA domain CPRO_03790 PF07883 Cupin domain CPRO_03790 PF01381 Helix-turn-helix CPRO_03810 PF00188 Cysteine-rich secretory protein family CPRO_03850 PF04055 Radical SAM superfamily CPRO_03870 PF05697 Bacterial trigger factor protein (TF) CPRO_03870 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CPRO_03870 PF05698 Bacterial trigger factor protein (TF) C-terminus CPRO_03880 PF00574 Clp protease CPRO_03900 PF13291 ACT domain CPRO_03900 PF00291 Pyridoxal-phosphate dependent enzyme CPRO_03910 PF00892 EamA-like transporter family CPRO_03930 PF01580 FtsK/SpoIIIE family CPRO_03930 PF09397 Ftsk gamma domain CPRO_03930 PF17854 FtsK alpha domain CPRO_03940 PF01268 Formate--tetrahydrofolate ligase CPRO_03950 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CPRO_03950 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CPRO_03960 PF00919 Uncharacterized protein family UPF0004 CPRO_03960 PF04055 Radical SAM superfamily CPRO_03960 PF18693 TRAM domain CPRO_03970 PF01066 CDP-alcohol phosphatidyltransferase CPRO_03980 PF02464 Competence-damaged protein CPRO_03980 PF18146 Damage-inducible protein CinA KH domain CPRO_03980 PF00994 Probable molybdopterin binding domain CPRO_04000 PF00154 recA bacterial DNA recombination protein CPRO_04010 PF02631 RecX family CPRO_04030 PF00829 Ribosomal prokaryotic L21 protein CPRO_04040 PF04327 Cysteine protease Prp CPRO_04050 PF01016 Ribosomal L27 protein CPRO_04080 PF17152 Periplasmic sensor domain CPRO_04080 PF00990 Diguanylate cyclase, GGDEF domain CPRO_04100 PF05193 Peptidase M16 inactive domain CPRO_04100 PF00675 Insulinase (Peptidase family M16) CPRO_04110 PF01790 Prolipoprotein diacylglyceryl transferase CPRO_04120 PF00005 ABC transporter CPRO_04120 PF16326 ABC transporter C-terminal domain CPRO_04120 PF12848 ABC transporter CPRO_04130 PF01595 Cyclin M transmembrane N-terminal domain CPRO_04130 PF00571 CBS domain CPRO_04130 PF03471 Transporter associated domain CPRO_04140 PF00704 Glycosyl hydrolases family 18 CPRO_04140 PF01476 LysM domain CPRO_04160 PF00486 Transcriptional regulatory protein, C terminal CPRO_04160 PF00072 Response regulator receiver domain CPRO_04170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPRO_04170 PF00672 HAMP domain CPRO_04170 PF00512 His Kinase A (phospho-acceptor) domain CPRO_04210 PF02355 Protein export membrane protein CPRO_04210 PF07549 SecD/SecF GG Motif CPRO_04220 PF07549 SecD/SecF GG Motif CPRO_04220 PF02355 Protein export membrane protein CPRO_04230 PF01171 PP-loop family CPRO_04240 PF00589 Phage integrase family CPRO_04240 PF13495 Phage integrase, N-terminal SAM-like domain CPRO_04260 PF01926 50S ribosome-binding GTPase CPRO_04270 PF10502 Signal peptidase, peptidase S26 CPRO_04290 PF01245 Ribosomal protein L19 CPRO_04340 PF00156 Phosphoribosyl transferase domain CPRO_04350 PF10141 Single-strand DNA-specific exonuclease, C terminal domain CPRO_04350 PF17768 RecJ OB domain CPRO_04350 PF02272 DHHA1 domain CPRO_04350 PF01368 DHH family CPRO_04360 PF00933 Glycosyl hydrolase family 3 N terminal domain CPRO_04370 PF13291 ACT domain CPRO_04370 PF02824 TGS domain CPRO_04370 PF04607 Region found in RelA / SpoT proteins CPRO_04390 PF04055 Radical SAM superfamily CPRO_04410 PF02080 TrkA-C domain CPRO_04410 PF02254 TrkA-N domain CPRO_04420 PF02386 Cation transport protein CPRO_04440 PF00009 Elongation factor Tu GTP binding domain CPRO_04440 PF03144 Elongation factor Tu domain 2 CPRO_04440 PF06421 GTP-binding protein LepA C-terminus CPRO_04440 PF00679 Elongation factor G C-terminus CPRO_04450 PF00072 Response regulator receiver domain CPRO_04450 PF08769 Sporulation initiation factor Spo0A C terminal CPRO_04460 PF00398 Ribosomal RNA adenine dimethylase CPRO_04510 PF01965 DJ-1/PfpI family CPRO_04540 PF02390 Putative methyltransferase CPRO_04560 PF04055 Radical SAM superfamily CPRO_04560 PF16199 Radical_SAM C-terminal domain CPRO_04580 PF00155 Aminotransferase class I and II CPRO_04600 PF01842 ACT domain CPRO_04610 PF00288 GHMP kinases N terminal domain CPRO_04610 PF08544 GHMP kinases C terminal CPRO_04620 PF00696 Amino acid kinase family CPRO_04620 PF01842 ACT domain CPRO_04620 PF13840 ACT domain CPRO_04630 PF05067 Manganese containing catalase CPRO_04700 PF00857 Isochorismatase family CPRO_04710 PF05067 Manganese containing catalase CPRO_04740 PF02632 BioY family CPRO_04760 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CPRO_04760 PF02770 Acyl-CoA dehydrogenase, middle domain CPRO_04760 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CPRO_04770 PF01012 Electron transfer flavoprotein domain CPRO_04780 PF00766 Electron transfer flavoprotein FAD-binding domain CPRO_04780 PF01012 Electron transfer flavoprotein domain CPRO_04790 PF04607 Region found in RelA / SpoT proteins CPRO_04820 PF00773 RNB domain CPRO_04820 PF00575 S1 RNA binding domain CPRO_04820 PF17876 Cold shock domain CPRO_04820 PF08206 Ribonuclease B OB domain CPRO_04840 PF13520 Amino acid permease CPRO_04850 PF02001 Protein of unknown function DUF134 CPRO_04860 PF10609 NUBPL iron-transfer P-loop NTPase CPRO_04870 PF01235 Sodium:alanine symporter family CPRO_04880 PF01235 Sodium:alanine symporter family CPRO_04890 PF01235 Sodium:alanine symporter family CPRO_04910 PF13439 Glycosyltransferase Family 4 CPRO_04910 PF00534 Glycosyl transferases group 1 CPRO_04920 PF00580 UvrD/REP helicase N-terminal domain CPRO_04920 PF13361 UvrD-like helicase C-terminal domain CPRO_04940 PF00005 ABC transporter CPRO_04990 PF04294 VanW like protein CPRO_05010 PF00155 Aminotransferase class I and II CPRO_05030 PF00571 CBS domain CPRO_05030 PF01595 Cyclin M transmembrane N-terminal domain CPRO_05030 PF03471 Transporter associated domain CPRO_05050 PF02146 Sir2 family CPRO_05080 PF03551 Transcriptional regulator PadR-like family CPRO_05160 PF07670 Nucleoside recognition CPRO_05160 PF02421 Ferrous iron transport protein B CPRO_05160 PF17910 FeoB cytosolic helical domain CPRO_05160 PF07664 Ferrous iron transport protein B C terminus CPRO_05160 PF04023 FeoA domain CPRO_05190 PF02203 Tar ligand binding domain homologue CPRO_05190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CPRO_05190 PF00672 HAMP domain CPRO_05210 PF00258 Flavodoxin CPRO_05250 PF04607 Region found in RelA / SpoT proteins CPRO_05280 PF01613 Flavin reductase like domain CPRO_05290 PF17126 RsmF rRNA methyltransferase first C-terminal domain CPRO_05290 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF CPRO_05290 PF01189 16S rRNA methyltransferase RsmB/F CPRO_05300 PF00291 Pyridoxal-phosphate dependent enzyme CPRO_05300 PF14821 Threonine synthase N terminus CPRO_05310 PF00923 Transaldolase/Fructose-6-phosphate aldolase CPRO_05320 PF02779 Transketolase, pyrimidine binding domain CPRO_05320 PF02780 Transketolase, C-terminal domain CPRO_05320 PF00456 Transketolase, thiamine diphosphate binding domain CPRO_05350 PF05167 Uncharacterised ACR (DUF711) CPRO_05370 PF00338 Ribosomal protein S10p/S20e CPRO_05380 PF00297 Ribosomal protein L3 CPRO_05390 PF00573 Ribosomal protein L4/L1 family CPRO_05400 PF00276 Ribosomal protein L23 CPRO_05410 PF00181 Ribosomal Proteins L2, RNA binding domain CPRO_05410 PF03947 Ribosomal Proteins L2, C-terminal domain CPRO_05420 PF00203 Ribosomal protein S19 CPRO_05430 PF00237 Ribosomal protein L22p/L17e CPRO_05440 PF07650 KH domain CPRO_05440 PF00189 Ribosomal protein S3, C-terminal domain CPRO_05450 PF00252 Ribosomal protein L16p/L10e CPRO_05460 PF00831 Ribosomal L29 protein CPRO_05470 PF00366 Ribosomal protein S17 CPRO_05480 PF00238 Ribosomal protein L14p/L23e CPRO_05490 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CPRO_05490 PF00467 KOW motif CPRO_05510 PF00253 Ribosomal protein S14p/S29e CPRO_05520 PF00410 Ribosomal protein S8 CPRO_05530 PF00347 Ribosomal protein L6 CPRO_05540 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CPRO_05560 PF00327 Ribosomal protein L30p/L7e CPRO_05570 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CPRO_05580 PF00344 SecY translocase CPRO_05590 PF05191 Adenylate kinase, active site lid CPRO_05600 PF00557 Metallopeptidase family M24 CPRO_05620 PF01176 Translation initiation factor 1A / IF-1 CPRO_05630 PF00444 Ribosomal protein L36 CPRO_05640 PF00416 Ribosomal protein S13/S18 CPRO_05660 PF01479 S4 domain CPRO_05660 PF00163 Ribosomal protein S4/S9 N-terminal domain CPRO_05670 PF01479 S4 domain CPRO_05670 PF00163 Ribosomal protein S4/S9 N-terminal domain CPRO_05690 PF01196 Ribosomal protein L17 CPRO_05720 PF00005 ABC transporter CPRO_05730 PF00005 ABC transporter CPRO_05740 PF02361 Cobalt transport protein CPRO_05750 PF01416 tRNA pseudouridine synthase CPRO_05760 PF00572 Ribosomal protein L13 CPRO_05770 PF00380 Ribosomal protein S9/S16 CPRO_05780 PF05684 Protein of unknown function (DUF819) CPRO_05790 PF01244 Membrane dipeptidase (Peptidase family M19) CPRO_05810 PF01985 CRS1 / YhbY (CRM) domain CPRO_05830 PF01467 Cytidylyltransferase-like CPRO_05850 PF01645 Conserved region in glutamate synthase CPRO_05850 PF04898 Glutamate synthase central domain CPRO_05850 PF01493 GXGXG motif CPRO_05850 PF00310 Glutamine amidotransferases class-II CPRO_05860 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CPRO_05860 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPRO_05870 PF00672 HAMP domain CPRO_05870 PF02203 Tar ligand binding domain homologue CPRO_05870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CPRO_05900 PF00753 Metallo-beta-lactamase superfamily CPRO_05930 PF05958 tRNA (Uracil-5-)-methyltransferase CPRO_05940 PF00575 S1 RNA binding domain CPRO_05960 PF09383 NIL domain CPRO_05960 PF00005 ABC transporter CPRO_05970 PF00528 Binding-protein-dependent transport system inner membrane component CPRO_05980 PF03180 NLPA lipoprotein CPRO_06000 PF01554 MatE CPRO_06020 PF01116 Fructose-bisphosphate aldolase class-II CPRO_06030 PF01252 Signal peptidase (SPase) II CPRO_06040 PF01042 Endoribonuclease L-PSP CPRO_06050 PF00009 Elongation factor Tu GTP binding domain CPRO_06050 PF03144 Elongation factor Tu domain 2 CPRO_06050 PF16658 Class II release factor RF3, C-terminal domain CPRO_06070 PF04542 Sigma-70 region 2 CPRO_06070 PF08281 Sigma-70, region 4 CPRO_06090 PF13393 Histidyl-tRNA synthetase CPRO_06100 PF01634 ATP phosphoribosyltransferase CPRO_06110 PF00815 Histidinol dehydrogenase CPRO_06120 PF00155 Aminotransferase class I and II CPRO_06130 PF00475 Imidazoleglycerol-phosphate dehydratase CPRO_06140 PF00117 Glutamine amidotransferase class-I CPRO_06150 PF00977 Histidine biosynthesis protein CPRO_06160 PF00977 Histidine biosynthesis protein CPRO_06170 PF01502 Phosphoribosyl-AMP cyclohydrolase CPRO_06170 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CPRO_06190 PF00255 Glutathione peroxidase CPRO_06200 PF01047 MarR family CPRO_06270 PF08378 Nuclease-related domain CPRO_06350 PF02386 Cation transport protein CPRO_06370 PF02702 Osmosensitive K+ channel His kinase sensor domain CPRO_06370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPRO_06370 PF00512 His Kinase A (phospho-acceptor) domain CPRO_06370 PF13493 Domain of unknown function (DUF4118) CPRO_06380 PF00486 Transcriptional regulatory protein, C terminal CPRO_06380 PF00072 Response regulator receiver domain CPRO_06430 PF07833 Copper amine oxidase N-terminal domain CPRO_06450 PF01053 Cys/Met metabolism PLP-dependent enzyme CPRO_06460 PF03466 LysR substrate binding domain CPRO_06460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPRO_06500 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CPRO_06500 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CPRO_06510 PF00550 Phosphopantetheine attachment site CPRO_06520 PF03060 Nitronate monooxygenase CPRO_06530 PF00698 Acyl transferase domain CPRO_06550 PF02801 Beta-ketoacyl synthase, C-terminal domain CPRO_06550 PF00109 Beta-ketoacyl synthase, N-terminal domain CPRO_06560 PF00364 Biotin-requiring enzyme CPRO_06570 PF07977 FabA-like domain CPRO_06580 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CPRO_06580 PF00289 Biotin carboxylase, N-terminal domain CPRO_06580 PF02785 Biotin carboxylase C-terminal domain CPRO_06590 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CPRO_06590 PF17848 Acetyl-coA carboxylase zinc finger domain CPRO_06630 PF03418 Germination protease CPRO_06640 PF01649 Ribosomal protein S20 CPRO_06660 PF02885 Glycosyl transferase family, helical bundle domain CPRO_06660 PF00591 Glycosyl transferase family, a/b domain CPRO_06660 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CPRO_06690 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CPRO_06690 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CPRO_06690 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain CPRO_06700 PF08264 Anticodon-binding domain of tRNA CPRO_06700 PF00133 tRNA synthetases class I (I, L, M and V) CPRO_06710 PF02683 Cytochrome C biogenesis protein transmembrane region CPRO_06730 PF13411 MerR HTH family regulatory protein CPRO_06730 PF06445 GyrI-like small molecule binding domain CPRO_06740 PF02515 CoA-transferase family III CPRO_06750 PF03061 Thioesterase superfamily CPRO_06770 PF00730 HhH-GPD superfamily base excision DNA repair protein CPRO_06770 PF00633 Helix-hairpin-helix motif CPRO_06810 PF04073 Aminoacyl-tRNA editing domain CPRO_06820 PF13180 PDZ domain CPRO_06840 PF02421 Ferrous iron transport protein B CPRO_06840 PF07664 Ferrous iron transport protein B C terminus CPRO_06840 PF17910 FeoB cytosolic helical domain CPRO_06840 PF07670 Nucleoside recognition CPRO_06860 PF00480 ROK family CPRO_06880 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CPRO_06880 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CPRO_06890 PF14437 MafB19-like deaminase CPRO_06900 PF01327 Polypeptide deformylase CPRO_06910 PF07499 RuvA, C-terminal domain CPRO_06910 PF01330 RuvA N terminal domain CPRO_06920 PF05491 RuvB C-terminal winged helix domain CPRO_06920 PF05496 Holliday junction DNA helicase RuvB P-loop domain CPRO_06920 PF17864 RuvB AAA lid domain CPRO_06950 PF02915 Rubrerythrin CPRO_06960 PF17746 SfsA N-terminal OB domain CPRO_06960 PF03749 Sugar fermentation stimulation protein RE domain CPRO_06970 PF00768 D-alanyl-D-alanine carboxypeptidase CPRO_06970 PF07943 Penicillin-binding protein 5, C-terminal domain CPRO_06980 PF00990 Diguanylate cyclase, GGDEF domain CPRO_06980 PF17156 Gammaproteobacterial periplasmic sensor domain CPRO_06990 PF01810 LysE type translocator CPRO_07000 PF00269 Small, acid-soluble spore proteins, alpha/beta type CPRO_07040 PF00999 Sodium/hydrogen exchanger family CPRO_07050 PF00271 Helicase conserved C-terminal domain CPRO_07050 PF04851 Type III restriction enzyme, res subunit CPRO_07050 PF17757 UvrB interaction domain CPRO_07050 PF02151 UvrB/uvrC motif CPRO_07050 PF12344 Ultra-violet resistance protein B CPRO_07060 PF17755 UvrA DNA-binding domain CPRO_07060 PF17760 UvrA interaction domain CPRO_07070 PF17755 UvrA DNA-binding domain CPRO_07070 PF17760 UvrA interaction domain CPRO_07110 PF05173 Dihydrodipicolinate reductase, C-terminus CPRO_07110 PF01113 Dihydrodipicolinate reductase, N-terminus CPRO_07130 PF00701 Dihydrodipicolinate synthetase family CPRO_07140 PF02774 Semialdehyde dehydrogenase, dimerisation domain CPRO_07140 PF01118 Semialdehyde dehydrogenase, NAD binding domain CPRO_07160 PF13649 Methyltransferase domain CPRO_07170 PF01430 Hsp33 protein CPRO_07200 PF01496 V-type ATPase 116kDa subunit family CPRO_07210 PF00137 ATP synthase subunit C CPRO_07240 PF01990 ATP synthase (F/14-kDa) subunit CPRO_07280 PF00155 Aminotransferase class I and II CPRO_07300 PF00561 alpha/beta hydrolase fold CPRO_07300 PF08386 TAP-like protein CPRO_07310 PF03590 Aspartate-ammonia ligase CPRO_07340 PF04122 Putative cell wall binding repeat 2 CPRO_07340 PF08486 Stage II sporulation protein CPRO_07360 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CPRO_07360 PF00205 Thiamine pyrophosphate enzyme, central domain CPRO_07360 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CPRO_07370 PF10369 Small subunit of acetolactate synthase CPRO_07380 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CPRO_07380 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CPRO_07400 PF00152 tRNA synthetases class II (D, K and N) CPRO_07400 PF01336 OB-fold nucleic acid binding domain CPRO_07400 PF02938 GAD domain CPRO_07420 PF00589 Phage integrase family CPRO_07420 PF18644 Phage integrase SAM-like domain CPRO_07560 PF01612 3'-5' exonuclease CPRO_07560 PF01367 5'-3' exonuclease, C-terminal SAM fold CPRO_07560 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CPRO_07560 PF00476 DNA polymerase family A CPRO_07620 PF04542 Sigma-70 region 2 CPRO_07620 PF04539 Sigma-70 region 3 CPRO_07620 PF04545 Sigma-70, region 4 CPRO_07630 PF00313 'Cold-shock' DNA-binding domain CPRO_07680 PF03592 Terminase small subunit CPRO_07990 PF00149 Calcineurin-like phosphoesterase CPRO_07990 PF02872 5'-nucleotidase, C-terminal domain CPRO_08000 PF02872 5'-nucleotidase, C-terminal domain CPRO_08000 PF00149 Calcineurin-like phosphoesterase CPRO_08010 PF00892 EamA-like transporter family CPRO_08050 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CPRO_08070 PF03576 Peptidase family S58 CPRO_08080 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CPRO_08100 PF05949 Bacterial protein of unknown function (DUF881) CPRO_08110 PF06947 Protein of unknown function (DUF1290) CPRO_08120 PF00091 Tubulin/FtsZ family, GTPase domain CPRO_08120 PF12327 FtsZ family, C-terminal domain CPRO_08130 PF12849 PBP superfamily domain CPRO_08140 PF00528 Binding-protein-dependent transport system inner membrane component CPRO_08150 PF00528 Binding-protein-dependent transport system inner membrane component CPRO_08160 PF00005 ABC transporter CPRO_08170 PF01895 PhoU domain CPRO_08190 PF00072 Response regulator receiver domain CPRO_08190 PF00486 Transcriptional regulatory protein, C terminal CPRO_08200 PF00512 His Kinase A (phospho-acceptor) domain CPRO_08200 PF00989 PAS fold CPRO_08200 PF16736 Single Cache-like CPRO_08200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPRO_08230 PF02445 Quinolinate synthetase A protein CPRO_08240 PF00890 FAD binding domain CPRO_08250 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CPRO_08250 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CPRO_08270 PF18318 Glutamine synthetase C-terminal domain CPRO_08270 PF00120 Glutamine synthetase, catalytic domain CPRO_08270 PF12437 Glutamine synthetase type III N terminal CPRO_08330 PF05164 Cell division protein ZapA CPRO_08350 PF01098 Cell cycle protein CPRO_08360 PF00905 Penicillin binding protein transpeptidase domain CPRO_08400 PF01144 Coenzyme A transferase CPRO_08410 PF00072 Response regulator receiver domain CPRO_08420 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CPRO_08420 PF00512 His Kinase A (phospho-acceptor) domain CPRO_08420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPRO_08420 PF00072 Response regulator receiver domain CPRO_08420 PF01627 Hpt domain CPRO_08420 PF00672 HAMP domain CPRO_08440 PF04304 Protein of unknown function (DUF454) CPRO_08460 PF00664 ABC transporter transmembrane region CPRO_08460 PF00005 ABC transporter CPRO_08580 PF01476 LysM domain CPRO_08580 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CPRO_08610 PF10934 Protein of unknown function (DUF2634) CPRO_08620 PF04865 Baseplate J-like protein CPRO_08710 PF02574 Homocysteine S-methyltransferase CPRO_08790 PF17788 HypF Kae1-like domain CPRO_08790 PF00708 Acylphosphatase CPRO_08790 PF07503 HypF finger CPRO_08790 PF01300 Telomere recombination CPRO_08800 PF01455 HupF/HypC family CPRO_08810 PF01924 Hydrogenase formation hypA family CPRO_08820 PF02769 AIR synthase related protein, C-terminal domain CPRO_08820 PF00586 AIR synthase related protein, N-terminal domain CPRO_08840 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal CPRO_08840 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CPRO_08850 PF00374 Nickel-dependent hydrogenase CPRO_08860 PF18324 Hypothetical protein TT1725 CPRO_08860 PF00180 Isocitrate/isopropylmalate dehydrogenase CPRO_08870 PF00330 Aconitase family (aconitate hydratase) CPRO_08880 PF00682 HMGL-like CPRO_08910 PF00476 DNA polymerase family A CPRO_08910 PF01367 5'-3' exonuclease, C-terminal SAM fold CPRO_08910 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CPRO_08920 PF01121 Dephospho-CoA kinase CPRO_08940 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CPRO_08950 PF01230 HIT domain CPRO_08960 PF00239 Resolvase, N terminal domain CPRO_09090 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CPRO_09110 PF11799 impB/mucB/samB family C-terminal domain CPRO_09110 PF00817 impB/mucB/samB family CPRO_09130 PF00293 NUDIX domain CPRO_09160 PF04002 RadC-like JAB domain CPRO_09180 PF00579 tRNA synthetases class I (W and Y) CPRO_09190 PF13180 PDZ domain CPRO_09230 PF00733 Asparagine synthase CPRO_09230 PF13537 Glutamine amidotransferase domain CPRO_09240 PF18318 Glutamine synthetase C-terminal domain CPRO_09240 PF12437 Glutamine synthetase type III N terminal CPRO_09240 PF00120 Glutamine synthetase, catalytic domain CPRO_09260 PF00990 Diguanylate cyclase, GGDEF domain CPRO_09280 PF02548 Ketopantoate hydroxymethyltransferase CPRO_09290 PF02569 Pantoate-beta-alanine ligase CPRO_09320 PF00672 HAMP domain CPRO_09320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CPRO_09320 PF17200 Single Cache domain 2 CPRO_09370 PF03471 Transporter associated domain CPRO_09370 PF00999 Sodium/hydrogen exchanger family CPRO_09370 PF02080 TrkA-C domain CPRO_09380 PF00180 Isocitrate/isopropylmalate dehydrogenase CPRO_09400 PF00330 Aconitase family (aconitate hydratase) CPRO_09410 PF08502 LeuA allosteric (dimerisation) domain CPRO_09410 PF00682 HMGL-like CPRO_09420 PF00392 Bacterial regulatory proteins, gntR family CPRO_09420 PF07702 UTRA domain CPRO_09430 PF00920 Dehydratase family CPRO_09440 PF03480 Bacterial extracellular solute-binding protein, family 7 CPRO_09460 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CPRO_09480 PF01520 N-acetylmuramoyl-L-alanine amidase CPRO_09480 PF01471 Putative peptidoglycan binding domain CPRO_09490 PF00512 His Kinase A (phospho-acceptor) domain CPRO_09490 PF00072 Response regulator receiver domain CPRO_09490 PF09308 LuxQ, periplasmic CPRO_09490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPRO_09550 PF04055 Radical SAM superfamily CPRO_09560 PF10437 Bacterial lipoate protein ligase C-terminus CPRO_09560 PF03099 Biotin/lipoate A/B protein ligase family CPRO_09570 PF02954 Bacterial regulatory protein, Fis family CPRO_09570 PF13426 PAS domain CPRO_09570 PF00158 Sigma-54 interaction domain CPRO_09580 PF03313 Serine dehydratase alpha chain CPRO_09600 PF00521 DNA gyrase/topoisomerase IV, subunit A CPRO_09600 PF03989 DNA gyrase C-terminal domain, beta-propeller CPRO_09610 PF00986 DNA gyrase B subunit, carboxyl terminus CPRO_09610 PF00204 DNA gyrase B CPRO_09610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPRO_09610 PF01751 Toprim domain CPRO_09640 PF13673 Acetyltransferase (GNAT) domain CPRO_09640 PF00958 GMP synthase C terminal domain CPRO_09640 PF13302 Acetyltransferase (GNAT) domain CPRO_09640 PF03352 Methyladenine glycosylase CPRO_09640 PF00117 Glutamine amidotransferase class-I CPRO_09660 PF01081 KDPG and KHG aldolase CPRO_09680 PF03786 D-mannonate dehydratase (UxuA) CPRO_09690 PF08125 Mannitol dehydrogenase C-terminal domain CPRO_09690 PF01232 Mannitol dehydrogenase Rossmann domain CPRO_09700 PF03480 Bacterial extracellular solute-binding protein, family 7 CPRO_09710 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CPRO_09720 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CPRO_09730 PF08240 Alcohol dehydrogenase GroES-like domain CPRO_09730 PF00107 Zinc-binding dehydrogenase CPRO_09740 PF07729 FCD domain CPRO_09740 PF00392 Bacterial regulatory proteins, gntR family CPRO_09760 PF01565 FAD binding domain CPRO_09760 PF08031 Berberine and berberine like CPRO_09770 PF00072 Response regulator receiver domain CPRO_09770 PF09456 RcsC Alpha-Beta-Loop (ABL) CPRO_09770 PF00512 His Kinase A (phospho-acceptor) domain CPRO_09770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPRO_09780 PF00196 Bacterial regulatory proteins, luxR family CPRO_09780 PF00072 Response regulator receiver domain CPRO_09840 PF01380 SIS domain CPRO_09840 PF01418 Helix-turn-helix domain, rpiR family CPRO_09850 PF00294 pfkB family carbohydrate kinase CPRO_09870 PF00005 ABC transporter CPRO_09880 PF02653 Branched-chain amino acid transport system / permease component CPRO_09890 PF00480 ROK family CPRO_09900 PF01116 Fructose-bisphosphate aldolase class-II CPRO_09910 PF00365 Phosphofructokinase CPRO_09920 PF08013 Tagatose 6 phosphate kinase CPRO_09930 PF17932 Tetracyclin repressor-like, C-terminal domain CPRO_09930 PF00440 Bacterial regulatory proteins, tetR family CPRO_09940 PF00005 ABC transporter CPRO_10010 PF00440 Bacterial regulatory proteins, tetR family CPRO_10050 PF12833 Helix-turn-helix domain CPRO_10060 PF02810 SEC-C motif CPRO_10060 PF00557 Metallopeptidase family M24 CPRO_10100 PF07694 5TMR of 5TMR-LYT CPRO_10100 PF00990 Diguanylate cyclase, GGDEF domain CPRO_10120 PF00528 Binding-protein-dependent transport system inner membrane component CPRO_10130 PF00005 ABC transporter CPRO_10140 PF00497 Bacterial extracellular solute-binding proteins, family 3 CPRO_10150 PF00291 Pyridoxal-phosphate dependent enzyme CPRO_10170 PF04072 Leucine carboxyl methyltransferase CPRO_10180 PF02664 S-Ribosylhomocysteinase (LuxS) CPRO_10190 PF01053 Cys/Met metabolism PLP-dependent enzyme CPRO_10200 PF00291 Pyridoxal-phosphate dependent enzyme CPRO_10210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPRO_10210 PF03466 LysR substrate binding domain CPRO_10220 PF03180 NLPA lipoprotein CPRO_10230 PF00005 ABC transporter CPRO_10230 PF09383 NIL domain CPRO_10240 PF00528 Binding-protein-dependent transport system inner membrane component CPRO_10270 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CPRO_10270 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CPRO_10280 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CPRO_10290 PF00501 AMP-binding enzyme CPRO_10290 PF14535 AMP-binding enzyme C-terminal domain CPRO_10300 PF00155 Aminotransferase class I and II CPRO_10310 PF02082 Transcriptional regulator CPRO_10320 PF00291 Pyridoxal-phosphate dependent enzyme CPRO_10350 PF00899 ThiF family CPRO_10360 PF00266 Aminotransferase class-V CPRO_10370 PF01171 PP-loop family CPRO_10380 PF01842 ACT domain CPRO_10380 PF00742 Homoserine dehydrogenase CPRO_10380 PF03447 Homoserine dehydrogenase, NAD binding domain CPRO_10400 PF04545 Sigma-70, region 4 CPRO_10400 PF04542 Sigma-70 region 2 CPRO_10440 PF02954 Bacterial regulatory protein, Fis family CPRO_10440 PF00158 Sigma-54 interaction domain CPRO_10440 PF13426 PAS domain CPRO_10450 PF00676 Dehydrogenase E1 component CPRO_10460 PF02780 Transketolase, C-terminal domain CPRO_10460 PF02779 Transketolase, pyrimidine binding domain CPRO_10470 PF02817 e3 binding domain CPRO_10470 PF00364 Biotin-requiring enzyme CPRO_10470 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CPRO_10480 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CPRO_10480 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPRO_10490 PF00672 HAMP domain CPRO_10490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CPRO_10490 PF02743 Cache domain CPRO_10510 PF02653 Branched-chain amino acid transport system / permease component CPRO_10520 PF00005 ABC transporter CPRO_10540 PF02082 Transcriptional regulator CPRO_10550 PF04073 Aminoacyl-tRNA editing domain CPRO_10560 PF00668 Condensation domain CPRO_10560 PF00501 AMP-binding enzyme CPRO_10560 PF00550 Phosphopantetheine attachment site CPRO_10560 PF13193 AMP-binding enzyme C-terminal domain CPRO_10590 PF03062 MBOAT, membrane-bound O-acyltransferase family CPRO_10610 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CPRO_10610 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CPRO_10620 PF00733 Asparagine synthase CPRO_10620 PF13537 Glutamine amidotransferase domain CPRO_10640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPRO_10640 PF03466 LysR substrate binding domain CPRO_10650 PF00171 Aldehyde dehydrogenase family CPRO_10650 PF00465 Iron-containing alcohol dehydrogenase CPRO_10660 PF00271 Helicase conserved C-terminal domain CPRO_10660 PF00270 DEAD/DEAH box helicase CPRO_10670 PF02673 Bacitracin resistance protein BacA CPRO_10680 PF02308 MgtC family CPRO_10690 PF12164 Stage V sporulation protein AA CPRO_10700 PF13782 Stage V sporulation protein AB CPRO_10710 PF03862 SpoVAC/SpoVAEB sporulation membrane protein CPRO_10730 PF03862 SpoVAC/SpoVAEB sporulation membrane protein CPRO_10740 PF01709 Transcriptional regulator CPRO_10750 PF00589 Phage integrase family CPRO_10750 PF14659 Phage integrase, N-terminal SAM-like domain CPRO_10920 PF00589 Phage integrase family CPRO_10930 PF03592 Terminase small subunit CPRO_10930 PF10668 Phage terminase small subunit CPRO_11170 PF15975 Flotillin CPRO_11170 PF01145 SPFH domain / Band 7 family CPRO_11180 PF04892 VanZ like family CPRO_11220 PF00486 Transcriptional regulatory protein, C terminal CPRO_11220 PF00072 Response regulator receiver domain CPRO_11230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPRO_11230 PF00512 His Kinase A (phospho-acceptor) domain CPRO_11230 PF00672 HAMP domain CPRO_11240 PF00005 ABC transporter CPRO_11240 PF02687 FtsX-like permease family CPRO_11240 PF12704 MacB-like periplasmic core domain CPRO_11270 PF01795 MraW methylase family CPRO_11310 PF13538 UvrD-like helicase C-terminal domain CPRO_11320 PF12833 Helix-turn-helix domain CPRO_11370 PF12697 Alpha/beta hydrolase family CPRO_11390 PF13649 Methyltransferase domain CPRO_11400 PF00132 Bacterial transferase hexapeptide (six repeats) CPRO_11410 PF06445 GyrI-like small molecule binding domain CPRO_11410 PF12833 Helix-turn-helix domain CPRO_11450 PF00664 ABC transporter transmembrane region CPRO_11450 PF00005 ABC transporter CPRO_11460 PF00005 ABC transporter CPRO_11460 PF00664 ABC transporter transmembrane region CPRO_11490 PF04397 LytTr DNA-binding domain CPRO_11490 PF00072 Response regulator receiver domain CPRO_11510 PF04011 LemA family CPRO_11540 PF00072 Response regulator receiver domain CPRO_11540 PF00486 Transcriptional regulatory protein, C terminal CPRO_11550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPRO_11560 PF00005 ABC transporter CPRO_11570 PF02687 FtsX-like permease family CPRO_11580 PF00486 Transcriptional regulatory protein, C terminal CPRO_11580 PF00072 Response regulator receiver domain CPRO_11590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPRO_11590 PF00512 His Kinase A (phospho-acceptor) domain CPRO_11600 PF02557 D-alanyl-D-alanine carboxypeptidase CPRO_11630 PF08669 Glycine cleavage T-protein C-terminal barrel domain CPRO_11630 PF01571 Aminomethyltransferase folate-binding domain CPRO_11640 PF01597 Glycine cleavage H-protein CPRO_11670 PF02347 Glycine cleavage system P-protein CPRO_11680 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CPRO_11680 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPRO_11720 PF13419 Haloacid dehalogenase-like hydrolase CPRO_11730 PF01910 Thiamine-binding protein CPRO_11740 PF10415 Fumarase C C-terminus CPRO_11740 PF00206 Lyase CPRO_11760 PF00390 Malic enzyme, N-terminal domain CPRO_11760 PF03949 Malic enzyme, NAD binding domain CPRO_11770 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CPRO_11790 PF00588 SpoU rRNA Methylase family CPRO_11790 PF08032 RNA 2'-O ribose methyltransferase substrate binding CPRO_11810 PF00793 DAHP synthetase I family CPRO_11810 PF18152 DAHP synthase ferredoxin-like domain CPRO_11830 PF01761 3-dehydroquinate synthase CPRO_11840 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CPRO_11850 PF01264 Chorismate synthase CPRO_11860 PF01817 Chorismate mutase type II CPRO_11860 PF00800 Prephenate dehydratase CPRO_11870 PF01220 Dehydroquinase class II CPRO_11890 PF02381 MraZ protein, putative antitoxin-like CPRO_11910 PF01795 MraW methylase family CPRO_11930 PF03793 PASTA domain CPRO_11930 PF03717 Penicillin-binding Protein dimerisation domain CPRO_11930 PF00905 Penicillin binding protein transpeptidase domain CPRO_11940 PF00905 Penicillin binding protein transpeptidase domain CPRO_11940 PF03793 PASTA domain CPRO_11940 PF03717 Penicillin-binding Protein dimerisation domain CPRO_11950 PF08245 Mur ligase middle domain CPRO_11950 PF02875 Mur ligase family, glutamate ligase domain CPRO_11950 PF01225 Mur ligase family, catalytic domain CPRO_11960 PF02875 Mur ligase family, glutamate ligase domain CPRO_11960 PF01225 Mur ligase family, catalytic domain CPRO_11960 PF08245 Mur ligase middle domain CPRO_11970 PF00953 Glycosyl transferase family 4 CPRO_11970 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CPRO_11980 PF02875 Mur ligase family, glutamate ligase domain CPRO_11980 PF08245 Mur ligase middle domain CPRO_11990 PF01098 Cell cycle protein CPRO_12010 PF00133 tRNA synthetases class I (I, L, M and V) CPRO_12010 PF10458 Valyl tRNA synthetase tRNA binding arm CPRO_12010 PF08264 Anticodon-binding domain of tRNA CPRO_12030 PF00464 Serine hydroxymethyltransferase CPRO_12050 PF01371 Trp repressor protein CPRO_12060 PF00580 UvrD/REP helicase N-terminal domain CPRO_12060 PF13361 UvrD-like helicase C-terminal domain CPRO_12080 PF00528 Binding-protein-dependent transport system inner membrane component CPRO_12090 PF00005 ABC transporter CPRO_12120 PF03707 Bacterial signalling protein N terminal repeat CPRO_12120 PF00990 Diguanylate cyclase, GGDEF domain CPRO_12120 PF00563 EAL domain CPRO_12180 PF14659 Phage integrase, N-terminal SAM-like domain CPRO_12180 PF00589 Phage integrase family CPRO_12210 PF05525 Branched-chain amino acid transport protein CPRO_12230 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CPRO_12230 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPRO_12240 PF00842 Alanine racemase, C-terminal domain CPRO_12240 PF01168 Alanine racemase, N-terminal domain CPRO_12260 PF13686 DsrE/DsrF/DrsH-like family CPRO_12280 PF00072 Response regulator receiver domain CPRO_12320 PF03063 Prismane/CO dehydrogenase family CPRO_12360 PF00258 Flavodoxin CPRO_12360 PF00753 Metallo-beta-lactamase superfamily CPRO_12360 PF00301 Rubredoxin CPRO_12370 PF01235 Sodium:alanine symporter family CPRO_12390 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CPRO_12390 PF00512 His Kinase A (phospho-acceptor) domain CPRO_12390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPRO_12390 PF01627 Hpt domain CPRO_12390 PF00672 HAMP domain CPRO_12390 PF00072 Response regulator receiver domain CPRO_12400 PF00072 Response regulator receiver domain CPRO_12430 PF01381 Helix-turn-helix CPRO_12440 PF01494 FAD binding domain CPRO_12460 PF13344 Haloacid dehalogenase-like hydrolase CPRO_12470 PF02562 PhoH-like protein CPRO_12470 PF13638 PIN domain CPRO_12490 PF13597 Anaerobic ribonucleoside-triphosphate reductase CPRO_12490 PF03477 ATP cone domain CPRO_12500 PF06463 Molybdenum Cofactor Synthesis C CPRO_12500 PF04055 Radical SAM superfamily CPRO_12510 PF02645 Uncharacterised protein, DegV family COG1307 CPRO_12520 PF02559 CarD-like/TRCF domain CPRO_12540 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CPRO_12550 PF00075 RNase H CPRO_12560 PF00313 'Cold-shock' DNA-binding domain CPRO_12580 PF17871 AAA lid domain CPRO_12580 PF00004 ATPase family associated with various cellular activities (AAA) CPRO_12580 PF07724 AAA domain (Cdc48 subfamily) CPRO_12580 PF10431 C-terminal, D2-small domain, of ClpB protein CPRO_12580 PF02861 Clp amino terminal domain, pathogenicity island component CPRO_12590 PF00990 Diguanylate cyclase, GGDEF domain CPRO_12620 PF01205 Uncharacterized protein family UPF0029 CPRO_12620 PF09186 Domain of unknown function (DUF1949) CPRO_12630 PF02311 AraC-like ligand binding domain CPRO_12630 PF12833 Helix-turn-helix domain CPRO_12640 PF00892 EamA-like transporter family CPRO_12670 PF13280 WYL domain CPRO_12670 PF08279 HTH domain CPRO_12690 PF14268 YoaP-like CPRO_12690 PF00583 Acetyltransferase (GNAT) family CPRO_12720 PF05161 MOFRL family CPRO_12720 PF13660 Domain of unknown function (DUF4147) CPRO_12730 PF04073 Aminoacyl-tRNA editing domain CPRO_12740 PF01938 TRAM domain CPRO_12740 PF04055 Radical SAM superfamily CPRO_12740 PF00919 Uncharacterized protein family UPF0004 CPRO_12770 PF08676 MutL C terminal dimerisation domain CPRO_12770 PF01119 DNA mismatch repair protein, C-terminal domain CPRO_12800 PF00768 D-alanyl-D-alanine carboxypeptidase CPRO_12800 PF07943 Penicillin-binding protein 5, C-terminal domain CPRO_12810 PF02645 Uncharacterised protein, DegV family COG1307 CPRO_12820 PF01131 DNA topoisomerase CPRO_12820 PF01751 Toprim domain CPRO_12830 PF06838 Methionine gamma-lyase CPRO_12840 PF17726 Dam-replacing HTH domain CPRO_12840 PF06044 Dam-replacing family CPRO_12850 PF14667 Polysaccharide biosynthesis C-terminal domain CPRO_12850 PF01943 Polysaccharide biosynthesis protein CPRO_12860 PF13520 Amino acid permease CPRO_12870 PF01899 Na+/H+ ion antiporter subunit CPRO_12930 PF00361 Proton-conducting membrane transporter CPRO_12940 PF00361 Proton-conducting membrane transporter CPRO_12950 PF00361 Proton-conducting membrane transporter CPRO_12950 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CPRO_12960 PF00361 Proton-conducting membrane transporter CPRO_12970 PF02424 ApbE family CPRO_13010 PF17156 Gammaproteobacterial periplasmic sensor domain CPRO_13010 PF00990 Diguanylate cyclase, GGDEF domain CPRO_13040 PF02673 Bacitracin resistance protein BacA CPRO_13120 PF00027 Cyclic nucleotide-binding domain CPRO_13150 PF06908 YspA SLOG family CPRO_13180 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system CPRO_13190 PF02796 Helix-turn-helix domain of resolvase CPRO_13190 PF00239 Resolvase, N terminal domain CPRO_13360 PF02661 Fic/DOC family CPRO_13360 PF12728 Helix-turn-helix domain CPRO_13420 PF18073 Rubredoxin metal binding domain CPRO_13440 PF14659 Phage integrase, N-terminal SAM-like domain CPRO_13440 PF00589 Phage integrase family CPRO_13490 PF00860 Permease family CPRO_13500 PF00365 Phosphofructokinase CPRO_13520 PF00128 Alpha amylase, catalytic domain CPRO_13520 PF02903 Alpha amylase, N-terminal ig-like domain CPRO_13530 PF00849 RNA pseudouridylate synthase CPRO_13530 PF01479 S4 domain CPRO_13540 PF00004 ATPase family associated with various cellular activities (AAA) CPRO_13540 PF02861 Clp amino terminal domain, pathogenicity island component CPRO_13540 PF17871 AAA lid domain CPRO_13540 PF10431 C-terminal, D2-small domain, of ClpB protein CPRO_13540 PF07724 AAA domain (Cdc48 subfamily) CPRO_13560 PF18073 Rubredoxin metal binding domain CPRO_13570 PF02785 Biotin carboxylase C-terminal domain CPRO_13570 PF00289 Biotin carboxylase, N-terminal domain CPRO_13570 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CPRO_13570 PF00682 HMGL-like CPRO_13570 PF02436 Conserved carboxylase domain CPRO_13570 PF00364 Biotin-requiring enzyme CPRO_13600 PF00905 Penicillin binding protein transpeptidase domain CPRO_13600 PF00912 Transglycosylase CPRO_13610 PF03099 Biotin/lipoate A/B protein ligase family CPRO_13610 PF10437 Bacterial lipoate protein ligase C-terminus CPRO_13630 PF00239 Resolvase, N terminal domain CPRO_13630 PF02796 Helix-turn-helix domain of resolvase CPRO_13650 PF02811 PHP domain CPRO_13650 PF14579 Helix-hairpin-helix motif CPRO_13650 PF07733 Bacterial DNA polymerase III alpha NTPase domain CPRO_13650 PF11490 DNA polymerase III polC-type N-terminus II CPRO_13650 PF00929 Exonuclease CPRO_13650 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CPRO_13730 PF18277 AbrB C-terminal domain CPRO_13730 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CPRO_13970 PF01551 Peptidase family M23 CPRO_13970 PF01464 Transglycosylase SLT domain CPRO_13970 PF10145 Phage-related minor tail protein CPRO_14160 PF00183 Hsp90 protein CPRO_14260 PF02586 SOS response associated peptidase (SRAP) CPRO_14270 PF01522 Polysaccharide deacetylase CPRO_14280 PF00294 pfkB family carbohydrate kinase CPRO_14290 PF04227 Indigoidine synthase A like protein CPRO_14330 PF00571 CBS domain CPRO_14330 PF01595 Cyclin M transmembrane N-terminal domain CPRO_14330 PF03471 Transporter associated domain CPRO_14360 PF02441 Flavoprotein CPRO_14360 PF04127 DNA / pantothenate metabolism flavoprotein CPRO_14370 PF00437 Type II/IV secretion system protein CPRO_14390 PF00672 HAMP domain CPRO_14390 PF02743 Cache domain CPRO_14390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CPRO_14400 PF00085 Thioredoxin CPRO_14430 PF03466 LysR substrate binding domain CPRO_14430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPRO_14440 PF04055 Radical SAM superfamily CPRO_14450 PF01228 Glycine radical CPRO_14450 PF02901 Pyruvate formate lyase-like CPRO_14460 PF02421 Ferrous iron transport protein B CPRO_14460 PF07664 Ferrous iron transport protein B C terminus CPRO_14460 PF17910 FeoB cytosolic helical domain CPRO_14460 PF07670 Nucleoside recognition CPRO_14480 PF00239 Resolvase, N terminal domain CPRO_14480 PF02796 Helix-turn-helix domain of resolvase CPRO_14510 PF07995 Glucose / Sorbosone dehydrogenase CPRO_14520 PF10396 GTP-binding protein TrmE N-terminus CPRO_14520 PF12631 MnmE helical domain CPRO_14520 PF01926 50S ribosome-binding GTPase CPRO_14540 PF06968 Biotin and Thiamin Synthesis associated domain CPRO_14540 PF04055 Radical SAM superfamily CPRO_14560 PF02796 Helix-turn-helix domain of resolvase CPRO_14560 PF00239 Resolvase, N terminal domain CPRO_14580 PF00512 His Kinase A (phospho-acceptor) domain CPRO_14580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPRO_14590 PF00072 Response regulator receiver domain CPRO_14590 PF00486 Transcriptional regulatory protein, C terminal CPRO_14620 PF00005 ABC transporter CPRO_14630 PF00196 Bacterial regulatory proteins, luxR family CPRO_14640 PF00202 Aminotransferase class-III CPRO_14650 PF00171 Aldehyde dehydrogenase family CPRO_14660 PF03553 Na+/H+ antiporter family CPRO_14670 PF08281 Sigma-70, region 4 CPRO_14670 PF04542 Sigma-70 region 2 CPRO_14750 PF17910 FeoB cytosolic helical domain CPRO_14750 PF07664 Ferrous iron transport protein B C terminus CPRO_14750 PF02421 Ferrous iron transport protein B CPRO_14750 PF07670 Nucleoside recognition CPRO_14800 PF02638 Glycosyl hydrolase-like 10 CPRO_14810 PF08501 Shikimate dehydrogenase substrate binding domain CPRO_14840 PF01047 MarR family CPRO_14850 PF00672 HAMP domain CPRO_14850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CPRO_14870 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CPRO_14920 PF02073 Thermophilic metalloprotease (M29) CPRO_14930 PF00654 Voltage gated chloride channel CPRO_14940 PF00497 Bacterial extracellular solute-binding proteins, family 3 CPRO_14950 PF00528 Binding-protein-dependent transport system inner membrane component CPRO_14960 PF00005 ABC transporter CPRO_14970 PF01906 Putative heavy-metal-binding CPRO_14980 PF01544 CorA-like Mg2+ transporter protein CPRO_15000 PF05198 Translation initiation factor IF-3, N-terminal domain CPRO_15000 PF00707 Translation initiation factor IF-3, C-terminal domain CPRO_15010 PF01632 Ribosomal protein L35 CPRO_15020 PF00453 Ribosomal protein L20 CPRO_15040 PF00483 Nucleotidyl transferase CPRO_15040 PF01050 Mannose-6-phosphate isomerase CPRO_15060 PF00202 Aminotransferase class-III CPRO_15080 PF01048 Phosphorylase superfamily CPRO_15110 PF00294 pfkB family carbohydrate kinase CPRO_15120 PF02525 Flavodoxin-like fold CPRO_15130 PF13823 Alcohol dehydrogenase GroES-associated CPRO_15130 PF08240 Alcohol dehydrogenase GroES-like domain CPRO_15130 PF00107 Zinc-binding dehydrogenase CPRO_15140 PF12320 Type 5 capsule protein repressor C-terminal domain CPRO_15140 PF00149 Calcineurin-like phosphoesterase CPRO_15150 PF13476 AAA domain CPRO_15160 PF13476 AAA domain CPRO_15180 PF02441 Flavoprotein CPRO_15190 PF01053 Cys/Met metabolism PLP-dependent enzyme CPRO_15210 PF08486 Stage II sporulation protein CPRO_15230 PF02547 Queuosine biosynthesis protein CPRO_15240 PF12002 MgsA AAA+ ATPase C terminal CPRO_15240 PF00004 ATPase family associated with various cellular activities (AAA) CPRO_15240 PF16193 AAA C-terminal domain CPRO_15260 PF03483 B3/4 domain CPRO_15260 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CPRO_15260 PF01588 Putative tRNA binding domain CPRO_15260 PF03147 Ferredoxin-fold anticodon binding domain CPRO_15260 PF03484 tRNA synthetase B5 domain CPRO_15270 PF00700 Bacterial flagellin C-terminal helical region CPRO_15270 PF00669 Bacterial flagellin N-terminal helical region CPRO_15280 PF00563 EAL domain CPRO_15280 PF03707 Bacterial signalling protein N terminal repeat CPRO_15280 PF00990 Diguanylate cyclase, GGDEF domain CPRO_15300 PF14667 Polysaccharide biosynthesis C-terminal domain CPRO_15300 PF01943 Polysaccharide biosynthesis protein CPRO_15320 PF12826 Helix-hairpin-helix motif CPRO_15320 PF02151 UvrB/uvrC motif CPRO_15320 PF08459 UvrC Helix-hairpin-helix N-terminal CPRO_15320 PF01541 GIY-YIG catalytic domain CPRO_15330 PF02603 HPr Serine kinase N terminus CPRO_15330 PF07475 HPr Serine kinase C-terminal domain CPRO_15340 PF01565 FAD binding domain CPRO_15340 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CPRO_15350 PF03668 P-loop ATPase protein family CPRO_15360 PF14527 WhiA LAGLIDADG-like domain CPRO_15360 PF02650 WhiA C-terminal HTH domain CPRO_15360 PF10298 WhiA N-terminal LAGLIDADG-like domain CPRO_15370 PF00381 PTS HPr component phosphorylation site CPRO_15380 PF02926 THUMP domain CPRO_15380 PF01170 Putative RNA methylase family UPF0020 CPRO_15390 PF01702 Queuine tRNA-ribosyltransferase CPRO_15400 PF02699 Preprotein translocase subunit CPRO_15450 PF01156 Inosine-uridine preferring nucleoside hydrolase CPRO_15460 PF01156 Inosine-uridine preferring nucleoside hydrolase CPRO_15480 PF02915 Rubrerythrin CPRO_15490 PF08367 Peptidase M16C associated CPRO_15490 PF00675 Insulinase (Peptidase family M16) CPRO_15490 PF05193 Peptidase M16 inactive domain CPRO_15510 PF01551 Peptidase family M23 CPRO_15520 PF01648 4'-phosphopantetheinyl transferase superfamily CPRO_15530 PF08264 Anticodon-binding domain of tRNA CPRO_15530 PF00133 tRNA synthetases class I (I, L, M and V) CPRO_15530 PF13603 Leucyl-tRNA synthetase, Domain 2 CPRO_15530 PF09334 tRNA synthetases class I (M) CPRO_15540 PF00664 ABC transporter transmembrane region CPRO_15540 PF00005 ABC transporter CPRO_15550 PF00005 ABC transporter CPRO_15550 PF00664 ABC transporter transmembrane region CPRO_15560 PF01047 MarR family CPRO_15570 PF03006 Haemolysin-III related CPRO_15590 PF14579 Helix-hairpin-helix motif CPRO_15590 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CPRO_15590 PF07733 Bacterial DNA polymerase III alpha NTPase domain CPRO_15590 PF11490 DNA polymerase III polC-type N-terminus II CPRO_15590 PF02811 PHP domain CPRO_15590 PF00929 Exonuclease CPRO_15600 PF04551 GcpE protein CPRO_15610 PF02163 Peptidase family M50 CPRO_15610 PF13180 PDZ domain CPRO_15640 PF01255 Putative undecaprenyl diphosphate synthase CPRO_15650 PF01765 Ribosome recycling factor CPRO_15670 PF00889 Elongation factor TS CPRO_15680 PF00318 Ribosomal protein S2 CPRO_15690 PF01751 Toprim domain CPRO_15690 PF01396 Topoisomerase DNA binding C4 zinc finger CPRO_15690 PF01131 DNA topoisomerase CPRO_15700 PF02481 DNA recombination-mediator protein A CPRO_15700 PF17782 DprA winged helix domain CPRO_15710 PF13335 Magnesium chelatase, subunit ChlI C-terminal CPRO_15710 PF01078 Magnesium chelatase, subunit ChlI CPRO_15730 PF02743 Cache domain CPRO_15730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CPRO_15730 PF00672 HAMP domain CPRO_15740 PF00072 Response regulator receiver domain CPRO_15760 PF00082 Subtilase family CPRO_15790 PF05231 MASE1 CPRO_15790 PF00563 EAL domain CPRO_15800 PF00672 HAMP domain CPRO_15800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CPRO_15800 PF12729 Four helix bundle sensory module for signal transduction CPRO_15810 PF02666 Phosphatidylserine decarboxylase CPRO_15820 PF01066 CDP-alcohol phosphatidyltransferase CPRO_15850 PF05525 Branched-chain amino acid transport protein CPRO_15860 PF00155 Aminotransferase class I and II CPRO_15870 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CPRO_15870 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CPRO_15900 PF07729 FCD domain CPRO_15900 PF00392 Bacterial regulatory proteins, gntR family CPRO_15930 PF01964 Radical SAM ThiC family CPRO_15940 PF02581 Thiamine monophosphate synthase CPRO_15960 PF05690 Thiazole biosynthesis protein ThiG CPRO_15970 PF00899 ThiF family CPRO_15980 PF05690 Thiazole biosynthesis protein ThiG CPRO_15980 PF02597 ThiS family CPRO_15990 PF02632 BioY family CPRO_16000 PF06968 Biotin and Thiamin Synthesis associated domain CPRO_16000 PF04055 Radical SAM superfamily CPRO_16020 PF00202 Aminotransferase class-III CPRO_16030 PF00753 Metallo-beta-lactamase superfamily CPRO_16040 PF00873 AcrB/AcrD/AcrF family CPRO_16060 PF00440 Bacterial regulatory proteins, tetR family CPRO_16070 PF00578 AhpC/TSA family CPRO_16070 PF10417 C-terminal domain of 1-Cys peroxiredoxin CPRO_16130 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CPRO_16140 PF03063 Prismane/CO dehydrogenase family CPRO_16160 PF00378 Enoyl-CoA hydratase/isomerase CPRO_16170 PF01144 Coenzyme A transferase CPRO_16180 PF13426 PAS domain CPRO_16180 PF02954 Bacterial regulatory protein, Fis family CPRO_16180 PF00158 Sigma-54 interaction domain CPRO_16190 PF10371 Domain of unknown function CPRO_16190 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CPRO_16190 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CPRO_16190 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CPRO_16190 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CPRO_16210 PF01266 FAD dependent oxidoreductase CPRO_16210 PF00355 Rieske [2Fe-2S] domain CPRO_16220 PF05067 Manganese containing catalase CPRO_16260 PF03061 Thioesterase superfamily CPRO_16270 PF00171 Aldehyde dehydrogenase family CPRO_16290 PF00701 Dihydrodipicolinate synthetase family CPRO_16300 PF01266 FAD dependent oxidoreductase CPRO_16310 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPRO_16310 PF04324 BFD-like [2Fe-2S] binding domain CPRO_16320 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPRO_16320 PF04324 BFD-like [2Fe-2S] binding domain CPRO_16350 PF00209 Sodium:neurotransmitter symporter family CPRO_16370 PF14525 AraC-binding-like domain CPRO_16370 PF12833 Helix-turn-helix domain CPRO_16380 PF01613 Flavin reductase like domain CPRO_16390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CPRO_16390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CPRO_16390 PF02743 Cache domain CPRO_16390 PF02743 Cache domain CPRO_16390 PF00672 HAMP domain CPRO_16390 PF00672 HAMP domain CPRO_16410 PF00892 EamA-like transporter family CPRO_16420 PF01638 HxlR-like helix-turn-helix CPRO_16440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPRO_16440 PF13493 Domain of unknown function (DUF4118) CPRO_16440 PF02702 Osmosensitive K+ channel His kinase sensor domain CPRO_16440 PF00512 His Kinase A (phospho-acceptor) domain CPRO_16450 PF00072 Response regulator receiver domain CPRO_16450 PF00486 Transcriptional regulatory protein, C terminal CPRO_16470 PF02080 TrkA-C domain CPRO_16470 PF02254 TrkA-N domain CPRO_16480 PF02080 TrkA-C domain CPRO_16480 PF02254 TrkA-N domain CPRO_16490 PF02386 Cation transport protein CPRO_16500 PF00111 2Fe-2S iron-sulfur cluster binding domain CPRO_16500 PF01799 [2Fe-2S] binding domain CPRO_16520 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CPRO_16520 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CPRO_16560 PF01738 Dienelactone hydrolase family CPRO_16660 PF01565 FAD binding domain CPRO_16660 PF08031 Berberine and berberine like CPRO_16720 PF03773 Predicted permease CPRO_16740 PF01758 Sodium Bile acid symporter family CPRO_16760 PF03649 Uncharacterised protein family (UPF0014) CPRO_16770 PF00005 ABC transporter CPRO_16790 PF12833 Helix-turn-helix domain CPRO_16790 PF06445 GyrI-like small molecule binding domain CPRO_16820 PF00512 His Kinase A (phospho-acceptor) domain CPRO_16820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPRO_16830 PF00072 Response regulator receiver domain CPRO_16830 PF00486 Transcriptional regulatory protein, C terminal CPRO_16860 PF01554 MatE CPRO_16870 PF00334 Nucleoside diphosphate kinase CPRO_16880 PF00440 Bacterial regulatory proteins, tetR family CPRO_16880 PF13977 BetI-type transcriptional repressor, C-terminal CPRO_16890 PF00005 ABC transporter CPRO_16910 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CPRO_16930 PF03576 Peptidase family S58 CPRO_16950 PF07969 Amidohydrolase family CPRO_16960 PF00474 Sodium:solute symporter family CPRO_16980 PF02558 Ketopantoate reductase PanE/ApbA CPRO_16980 PF08546 Ketopantoate reductase PanE/ApbA C terminal CPRO_16990 PF02548 Ketopantoate hydroxymethyltransferase CPRO_17000 PF01614 Bacterial transcriptional regulator CPRO_17000 PF09339 IclR helix-turn-helix domain CPRO_17010 PF00563 EAL domain CPRO_17010 PF08668 HDOD domain CPRO_17040 PF02743 Cache domain CPRO_17040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CPRO_17040 PF00672 HAMP domain CPRO_17060 PF03424 Carbohydrate binding domain (family 17/28) CPRO_17060 PF00150 Cellulase (glycosyl hydrolase family 5) CPRO_17060 PF00395 S-layer homology domain CPRO_17140 PF00005 ABC transporter CPRO_17150 PF00072 Response regulator receiver domain CPRO_17150 PF00486 Transcriptional regulatory protein, C terminal CPRO_17160 PF00672 HAMP domain CPRO_17160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPRO_17160 PF00512 His Kinase A (phospho-acceptor) domain CPRO_17200 PF00672 HAMP domain CPRO_17200 PF07228 Stage II sporulation protein E (SpoIIE) CPRO_17230 PF00551 Formyl transferase CPRO_17230 PF02911 Formyl transferase, C-terminal domain CPRO_17230 PF01370 NAD dependent epimerase/dehydratase family CPRO_17240 PF01740 STAS domain CPRO_17250 PF04055 Radical SAM superfamily CPRO_17250 PF06463 Molybdenum Cofactor Synthesis C CPRO_17280 PF03412 Peptidase C39 family CPRO_17280 PF00005 ABC transporter CPRO_17280 PF00664 ABC transporter transmembrane region CPRO_17290 PF03412 Peptidase C39 family CPRO_17290 PF00005 ABC transporter CPRO_17290 PF00664 ABC transporter transmembrane region CPRO_17310 PF00990 Diguanylate cyclase, GGDEF domain CPRO_17310 PF17152 Periplasmic sensor domain CPRO_17370 PF00440 Bacterial regulatory proteins, tetR family CPRO_17370 PF17754 MftR C-terminal domain CPRO_17390 PF10057 Uncharacterized conserved protein (DUF2294) CPRO_17440 PF00994 Probable molybdopterin binding domain CPRO_17460 PF01967 MoaC family CPRO_17470 PF06463 Molybdenum Cofactor Synthesis C CPRO_17470 PF04055 Radical SAM superfamily CPRO_17480 PF00994 Probable molybdopterin binding domain CPRO_17480 PF03454 MoeA C-terminal region (domain IV) CPRO_17480 PF03453 MoeA N-terminal region (domain I and II) CPRO_17490 PF03453 MoeA N-terminal region (domain I and II) CPRO_17490 PF03454 MoeA C-terminal region (domain IV) CPRO_17490 PF00994 Probable molybdopterin binding domain CPRO_17500 PF00005 ABC transporter CPRO_17510 PF00528 Binding-protein-dependent transport system inner membrane component CPRO_17520 PF12849 PBP superfamily domain CPRO_17530 PF00581 Rhodanese-like domain CPRO_17530 PF00899 ThiF family CPRO_17580 PF00113 Enolase, C-terminal TIM barrel domain CPRO_17580 PF03952 Enolase, N-terminal domain CPRO_17600 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) CPRO_17600 PF12733 Cadherin-like beta sandwich domain CPRO_17720 PF13361 UvrD-like helicase C-terminal domain CPRO_17720 PF00580 UvrD/REP helicase N-terminal domain CPRO_17730 PF02463 RecF/RecN/SMC N terminal domain CPRO_17790 PF13408 Recombinase zinc beta ribbon domain CPRO_17790 PF07508 Recombinase CPRO_17840 PF01869 BadF/BadG/BcrA/BcrD ATPase family CPRO_17870 PF00005 ABC transporter CPRO_17920 PF00301 Rubredoxin CPRO_17960 PF00027 Cyclic nucleotide-binding domain CPRO_17960 PF13545 Crp-like helix-turn-helix domain CPRO_17980 PF00301 Rubredoxin CPRO_17980 PF00258 Flavodoxin CPRO_17980 PF00753 Metallo-beta-lactamase superfamily CPRO_18030 PF03063 Prismane/CO dehydrogenase family CPRO_18090 PF13276 HTH-like domain CPRO_18090 PF00665 Integrase core domain CPRO_18110 PF00350 Dynamin family CPRO_18120 PF01546 Peptidase family M20/M25/M40 CPRO_18120 PF07687 Peptidase dimerisation domain CPRO_18130 PF03606 C4-dicarboxylate anaerobic carrier CPRO_18140 PF01546 Peptidase family M20/M25/M40 CPRO_18150 PF00158 Sigma-54 interaction domain CPRO_18160 PF17158 Membrane-associated sensor, integral membrane domain CPRO_18160 PF00990 Diguanylate cyclase, GGDEF domain CPRO_18170 PF01966 HD domain CPRO_18180 PF10417 C-terminal domain of 1-Cys peroxiredoxin CPRO_18180 PF00578 AhpC/TSA family CPRO_18190 PF00892 EamA-like transporter family CPRO_18200 PF00158 Sigma-54 interaction domain CPRO_18200 PF02954 Bacterial regulatory protein, Fis family CPRO_18200 PF13426 PAS domain CPRO_18220 PF00872 Transposase, Mutator family CPRO_18230 PF07969 Amidohydrolase family CPRO_18270 PF00665 Integrase core domain CPRO_18270 PF13276 HTH-like domain CPRO_18290 PF01348 Type II intron maturase CPRO_18290 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CPRO_18310 PF02810 SEC-C motif CPRO_18330 PF13361 UvrD-like helicase C-terminal domain CPRO_18330 PF00580 UvrD/REP helicase N-terminal domain CPRO_18340 PF02463 RecF/RecN/SMC N terminal domain CPRO_18340 PF06470 SMC proteins Flexible Hinge Domain CPRO_18460 PF01527 Transposase CPRO_18520 PF00665 Integrase core domain CPRO_18520 PF13936 Helix-turn-helix domain CPRO_18550 PF02229 Transcriptional Coactivator p15 (PC4) CPRO_18560 PF08774 VRR-NUC domain CPRO_18560 PF04851 Type III restriction enzyme, res subunit CPRO_18570 PF18273 Type III R-M EcoP15I C-terminal domain CPRO_18570 PF01555 DNA methylase CPRO_18640 PF00565 Staphylococcal nuclease homologue CPRO_18660 PF03432 Relaxase/Mobilisation nuclease domain CPRO_18700 PF01348 Type II intron maturase CPRO_18700 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CPRO_18750 PF05973 Phage derived protein Gp49-like (DUF891) CPRO_18770 PF01751 Toprim domain CPRO_18770 PF01131 DNA topoisomerase CPRO_18810 PF00877 NlpC/P60 family CPRO_18830 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CPRO_18830 PF01348 Type II intron maturase CPRO_18950 PF17762 HTH domain found in ParB protein CPRO_18950 PF02195 ParB-like nuclease domain CPRO_18960 PF13614 AAA domain CPRO_18980 PF07508 Recombinase CPRO_18980 PF00239 Resolvase, N terminal domain CPRO_18980 PF13408 Recombinase zinc beta ribbon domain CPRO_19030 PF00873 AcrB/AcrD/AcrF family CPRO_19070 PF00440 Bacterial regulatory proteins, tetR family CPRO_19080 PF01797 Transposase IS200 like CPRO_19110 PF00753 Metallo-beta-lactamase superfamily CPRO_19180 PF00877 NlpC/P60 family CPRO_19190 PF01209 ubiE/COQ5 methyltransferase family CPRO_19230 PF00753 Metallo-beta-lactamase superfamily CPRO_19250 PF13411 MerR HTH family regulatory protein CPRO_19250 PF07739 TipAS antibiotic-recognition domain CPRO_19290 PF00145 C-5 cytosine-specific DNA methylase CPRO_19300 PF00145 C-5 cytosine-specific DNA methylase CPRO_19390 PF13280 WYL domain CPRO_19390 PF08279 HTH domain CPRO_19400 PF13280 WYL domain CPRO_19400 PF08279 HTH domain CPRO_19420 PF12848 ABC transporter CPRO_19420 PF16326 ABC transporter C-terminal domain CPRO_19420 PF00005 ABC transporter CPRO_19430 PF00005 ABC transporter CPRO_19430 PF12848 ABC transporter CPRO_19430 PF16326 ABC transporter C-terminal domain CPRO_19440 PF13411 MerR HTH family regulatory protein CPRO_19450 PF00005 ABC transporter CPRO_19540 PF00437 Type II/IV secretion system protein CPRO_19550 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CPRO_19640 PF04026 SpoVG CPRO_19700 PF00589 Phage integrase family CPRO_19710 PF02899 Phage integrase, N-terminal SAM-like domain CPRO_19710 PF00589 Phage integrase family CPRO_19720 PF00589 Phage integrase family CPRO_19720 PF02899 Phage integrase, N-terminal SAM-like domain CPRO_19840 PF00589 Phage integrase family CPRO_19840 PF02899 Phage integrase, N-terminal SAM-like domain CPRO_19850 PF14319 Transposase zinc-binding domain CPRO_19850 PF04986 Putative transposase CPRO_19900 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CPRO_19900 PF01348 Type II intron maturase CPRO_19920 PF00270 DEAD/DEAH box helicase CPRO_19920 PF13749 Putative ATP-dependent DNA helicase recG C-terminal CPRO_19920 PF17191 RecG wedge domain CPRO_20040 PF05958 tRNA (Uracil-5-)-methyltransferase CPRO_20040 PF01938 TRAM domain CPRO_20070 PF01336 OB-fold nucleic acid binding domain CPRO_20070 PF01966 HD domain CPRO_20120 PF00909 Ammonium Transporter Family CPRO_20130 PF04545 Sigma-70, region 4 CPRO_20130 PF04542 Sigma-70 region 2 CPRO_20130 PF04539 Sigma-70 region 3 CPRO_20180 PF02690 Na+/Pi-cotransporter CPRO_20190 PF00742 Homoserine dehydrogenase CPRO_20190 PF00696 Amino acid kinase family CPRO_20190 PF03447 Homoserine dehydrogenase, NAD binding domain CPRO_20200 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CPRO_20210 PF16653 Saccharopine dehydrogenase C-terminal domain CPRO_20210 PF03435 Saccharopine dehydrogenase NADP binding domain CPRO_20220 PF00491 Arginase family CPRO_20230 PF17284 Spermidine synthase tetramerisation domain CPRO_20240 PF01276 Orn/Lys/Arg decarboxylase, major domain CPRO_20240 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CPRO_20250 PF02675 S-adenosylmethionine decarboxylase CPRO_20260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPRO_20260 PF03466 LysR substrate binding domain CPRO_20270 PF08240 Alcohol dehydrogenase GroES-like domain CPRO_20270 PF00107 Zinc-binding dehydrogenase CPRO_20280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPRO_20280 PF00512 His Kinase A (phospho-acceptor) domain CPRO_20280 PF16736 Single Cache-like CPRO_20280 PF00989 PAS fold CPRO_20290 PF00486 Transcriptional regulatory protein, C terminal CPRO_20290 PF00072 Response regulator receiver domain CPRO_20310 PF00654 Voltage gated chloride channel CPRO_20320 PF08348 YheO-like PAS domain CPRO_20320 PF13309 HTH domain CPRO_20330 PF01184 GPR1/FUN34/yaaH family CPRO_20340 PF01746 tRNA (Guanine-1)-methyltransferase CPRO_20350 PF05239 PRC-barrel domain CPRO_20350 PF01782 RimM N-terminal domain CPRO_20370 PF00886 Ribosomal protein S16 CPRO_20380 PF02881 SRP54-type protein, helical bundle domain CPRO_20380 PF00448 SRP54-type protein, GTPase domain CPRO_20380 PF02978 Signal peptide binding domain CPRO_20390 PF04297 Putative helix-turn-helix protein, YlxM / p13 like CPRO_20400 PF00300 Histidine phosphatase superfamily (branch 1) CPRO_20430 PF02664 S-Ribosylhomocysteinase (LuxS) CPRO_20450 PF00375 Sodium:dicarboxylate symporter family CPRO_20460 PF03313 Serine dehydratase alpha chain CPRO_20470 PF01842 ACT domain CPRO_20470 PF03315 Serine dehydratase beta chain CPRO_20480 PF00118 TCP-1/cpn60 chaperonin family CPRO_20490 PF00166 Chaperonin 10 Kd subunit CPRO_20500 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPRO_20510 PF03144 Elongation factor Tu domain 2 CPRO_20510 PF00009 Elongation factor Tu GTP binding domain CPRO_20510 PF03764 Elongation factor G, domain IV CPRO_20510 PF00679 Elongation factor G C-terminus CPRO_20510 PF14492 Elongation Factor G, domain II CPRO_20520 PF01592 NifU-like N terminal domain CPRO_20530 PF00266 Aminotransferase class-V CPRO_20540 PF01381 Helix-turn-helix CPRO_20550 PF02463 RecF/RecN/SMC N terminal domain CPRO_20560 PF02863 Arginine repressor, C-terminal domain CPRO_20560 PF01316 Arginine repressor, DNA binding domain CPRO_20570 PF01513 ATP-NAD kinase CPRO_20580 PF01728 FtsJ-like methyltransferase CPRO_20580 PF01479 S4 domain CPRO_20590 PF02779 Transketolase, pyrimidine binding domain CPRO_20590 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CPRO_20590 PF02780 Transketolase, C-terminal domain CPRO_20600 PF02681 Divergent PAP2 family CPRO_20610 PF00348 Polyprenyl synthetase CPRO_20620 PF02609 Exonuclease VII small subunit CPRO_20630 PF13742 OB-fold nucleic acid binding domain CPRO_20630 PF02601 Exonuclease VII, large subunit CPRO_20640 PF01029 NusB family CPRO_20650 PF03780 Asp23 family, cell envelope-related function CPRO_20700 PF06686 Stage III sporulation protein AC/AD protein family CPRO_20710 PF06686 Stage III sporulation protein AC/AD protein family CPRO_20740 PF00072 Response regulator receiver domain CPRO_20740 PF04397 LytTr DNA-binding domain CPRO_20770 PF00465 Iron-containing alcohol dehydrogenase CPRO_20800 PF00709 Adenylosuccinate synthetase CPRO_20840 PF03772 Competence protein CPRO_20840 PF13567 Domain of unknown function (DUF4131) CPRO_20840 PF00753 Metallo-beta-lactamase superfamily CPRO_20860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPRO_20860 PF00512 His Kinase A (phospho-acceptor) domain CPRO_20860 PF00989 PAS fold CPRO_20860 PF16736 Single Cache-like CPRO_20870 PF00072 Response regulator receiver domain CPRO_20870 PF00486 Transcriptional regulatory protein, C terminal CPRO_20890 PF00768 D-alanyl-D-alanine carboxypeptidase CPRO_20890 PF07943 Penicillin-binding protein 5, C-terminal domain CPRO_20900 PF01476 LysM domain CPRO_20900 PF00877 NlpC/P60 family CPRO_20910 PF00664 ABC transporter transmembrane region CPRO_20910 PF00005 ABC transporter CPRO_20920 PF04954 Siderophore-interacting protein CPRO_20920 PF08021 Siderophore-interacting FAD-binding domain CPRO_20920 PF00005 ABC transporter CPRO_20920 PF00664 ABC transporter transmembrane region CPRO_20930 PF12833 Helix-turn-helix domain CPRO_20950 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CPRO_20950 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CPRO_20960 PF06029 AlkA N-terminal domain CPRO_20960 PF00730 HhH-GPD superfamily base excision DNA repair protein CPRO_20970 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CPRO_20970 PF02805 Metal binding domain of Ada CPRO_20970 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CPRO_20970 PF12833 Helix-turn-helix domain CPRO_20980 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family CPRO_21000 PF03707 Bacterial signalling protein N terminal repeat CPRO_21000 PF00563 EAL domain CPRO_21000 PF00990 Diguanylate cyclase, GGDEF domain CPRO_21210 PF02796 Helix-turn-helix domain of resolvase CPRO_21210 PF00239 Resolvase, N terminal domain CPRO_21370 PF02899 Phage integrase, N-terminal SAM-like domain CPRO_21370 PF00589 Phage integrase family CPRO_21380 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CPRO_21380 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CPRO_21390 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CPRO_21390 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CPRO_21420 PF04542 Sigma-70 region 2 CPRO_21420 PF04545 Sigma-70, region 4 CPRO_21420 PF04539 Sigma-70 region 3 CPRO_21430 PF13581 Histidine kinase-like ATPase domain CPRO_21440 PF01740 STAS domain CPRO_21450 PF04545 Sigma-70, region 4 CPRO_21450 PF04542 Sigma-70 region 2 CPRO_21510 PF01180 Dihydroorotate dehydrogenase CPRO_21520 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPRO_21520 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CPRO_21530 PF07687 Peptidase dimerisation domain CPRO_21530 PF01546 Peptidase family M20/M25/M40 CPRO_21540 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CPRO_21550 PF01979 Amidohydrolase family CPRO_21560 PF06445 GyrI-like small molecule binding domain CPRO_21560 PF13411 MerR HTH family regulatory protein CPRO_21590 PF03061 Thioesterase superfamily CPRO_21600 PF02515 CoA-transferase family III CPRO_21670 PF01478 Type IV leader peptidase family CPRO_21670 PF06750 Bacterial Peptidase A24 N-terminal domain CPRO_21680 PF07963 Prokaryotic N-terminal methylation motif CPRO_21680 PF00114 Pilin (bacterial filament) CPRO_21690 PF00482 Type II secretion system (T2SS), protein F CPRO_21700 PF00437 Type II/IV secretion system protein CPRO_21710 PF00437 Type II/IV secretion system protein CPRO_21770 PF01047 MarR family CPRO_21800 PF02618 YceG-like family CPRO_21810 PF02875 Mur ligase family, glutamate ligase domain CPRO_21810 PF08245 Mur ligase middle domain CPRO_21880 PF00730 HhH-GPD superfamily base excision DNA repair protein CPRO_21880 PF14815 NUDIX domain CPRO_21890 PF01226 Formate/nitrite transporter CPRO_21900 PF00291 Pyridoxal-phosphate dependent enzyme CPRO_21910 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CPRO_21910 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CPRO_21920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPRO_21920 PF02702 Osmosensitive K+ channel His kinase sensor domain CPRO_21920 PF00512 His Kinase A (phospho-acceptor) domain CPRO_21920 PF13493 Domain of unknown function (DUF4118) CPRO_21930 PF00072 Response regulator receiver domain CPRO_21930 PF00486 Transcriptional regulatory protein, C terminal CPRO_21990 PF02881 SRP54-type protein, helical bundle domain CPRO_21990 PF00448 SRP54-type protein, GTPase domain CPRO_22000 PF02463 RecF/RecN/SMC N terminal domain CPRO_22000 PF06470 SMC proteins Flexible Hinge Domain CPRO_22030 PF00849 RNA pseudouridylate synthase CPRO_22030 PF01479 S4 domain CPRO_22090 PF01168 Alanine racemase, N-terminal domain CPRO_22110 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CPRO_22110 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPRO_22120 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CPRO_22120 PF00364 Biotin-requiring enzyme CPRO_22120 PF02817 e3 binding domain CPRO_22130 PF01513 ATP-NAD kinase CPRO_22140 PF02779 Transketolase, pyrimidine binding domain CPRO_22140 PF02780 Transketolase, C-terminal domain CPRO_22150 PF00676 Dehydrogenase E1 component CPRO_22170 PF13426 PAS domain CPRO_22170 PF02954 Bacterial regulatory protein, Fis family CPRO_22170 PF00158 Sigma-54 interaction domain CPRO_22250 PF01638 HxlR-like helix-turn-helix CPRO_22290 PF07883 Cupin domain CPRO_22290 PF01381 Helix-turn-helix CPRO_22300 PF02901 Pyruvate formate lyase-like CPRO_22300 PF01228 Glycine radical CPRO_22320 PF11871 Domain of unknown function (DUF3391) CPRO_22320 PF01966 HD domain CPRO_22360 PF01168 Alanine racemase, N-terminal domain CPRO_22360 PF00842 Alanine racemase, C-terminal domain CPRO_22370 PF01235 Sodium:alanine symporter family CPRO_22380 PF01053 Cys/Met metabolism PLP-dependent enzyme CPRO_22390 PF13411 MerR HTH family regulatory protein CPRO_22410 PF08281 Sigma-70, region 4 CPRO_22410 PF04542 Sigma-70 region 2 CPRO_22420 PF05991 YacP-like NYN domain CPRO_22430 PF00588 SpoU rRNA Methylase family CPRO_22430 PF08032 RNA 2'-O ribose methyltransferase substrate binding CPRO_22440 PF00636 Ribonuclease III domain CPRO_22450 PF01406 tRNA synthetases class I (C) catalytic domain CPRO_22450 PF09190 DALR domain CPRO_22460 PF00132 Bacterial transferase hexapeptide (six repeats) CPRO_22460 PF06426 Serine acetyltransferase, N-terminal CPRO_22470 PF02542 YgbB family CPRO_22610 PF12127 SigmaW regulon antibacterial CPRO_22640 PF01726 LexA DNA binding domain CPRO_22640 PF00717 Peptidase S24-like CPRO_22650 PF02540 NAD synthase CPRO_22650 PF00795 Carbon-nitrogen hydrolase CPRO_22660 PF16736 Single Cache-like CPRO_22660 PF00989 PAS fold CPRO_22660 PF00512 His Kinase A (phospho-acceptor) domain CPRO_22660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPRO_22680 PF00486 Transcriptional regulatory protein, C terminal CPRO_22680 PF00072 Response regulator receiver domain CPRO_22690 PF00488 MutS domain V CPRO_22690 PF01713 Smr domain CPRO_22700 PF06874 Firmicute fructose-1,6-bisphosphatase CPRO_22730 PF13419 Haloacid dehalogenase-like hydrolase CPRO_22750 PF00814 Glycoprotease family CPRO_22760 PF00753 Metallo-beta-lactamase superfamily CPRO_22800 PF00834 Ribulose-phosphate 3 epimerase family CPRO_22810 PF16745 RsgA N-terminal domain CPRO_22810 PF03193 RsgA GTPase CPRO_22820 PF00069 Protein kinase domain CPRO_22820 PF03793 PASTA domain CPRO_22820 PF00069 Protein kinase domain CPRO_22820 PF03793 PASTA domain CPRO_22840 PF04055 Radical SAM superfamily CPRO_22850 PF01189 16S rRNA methyltransferase RsmB/F CPRO_22850 PF01029 NusB family CPRO_22860 PF04298 Putative neutral zinc metallopeptidase CPRO_22890 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CPRO_22890 PF00271 Helicase conserved C-terminal domain CPRO_22890 PF17764 3′ DNA-binding domain (3′BD) CPRO_22890 PF04851 Type III restriction enzyme, res subunit CPRO_22890 PF18074 Primosomal protein N C-terminal domain CPRO_22900 PF00270 DEAD/DEAH box helicase CPRO_22900 PF17764 3′ DNA-binding domain (3′BD) CPRO_22900 PF18074 Primosomal protein N C-terminal domain CPRO_22900 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CPRO_22900 PF00271 Helicase conserved C-terminal domain CPRO_22910 PF01192 RNA polymerase Rpb6 CPRO_22920 PF00625 Guanylate kinase CPRO_22930 PF04025 Domain of unknown function (DUF370) CPRO_22940 PF08340 Domain of unknown function (DUF1732) CPRO_22940 PF03755 YicC-like family, N-terminal region CPRO_22970 PF01966 HD domain CPRO_22970 PF12072 Domain of unknown function (DUF3552) CPRO_22970 PF00013 KH domain CPRO_22980 PF00575 S1 RNA binding domain CPRO_22980 PF10150 Ribonuclease E/G family CPRO_23000 PF01551 Peptidase family M23 CPRO_23020 PF03193 RsgA GTPase CPRO_23030 PF04463 Protein of unknown function (DUF523) CPRO_23050 PF12705 PD-(D/E)XK nuclease superfamily CPRO_23060 PF00005 ABC transporter CPRO_23060 PF00664 ABC transporter transmembrane region CPRO_23080 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CPRO_23360 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CPRO_23360 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CPRO_23370 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPRO_23370 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CPRO_23380 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CPRO_23380 PF02817 e3 binding domain CPRO_23380 PF00364 Biotin-requiring enzyme CPRO_23390 PF02780 Transketolase, C-terminal domain CPRO_23390 PF02779 Transketolase, pyrimidine binding domain CPRO_23400 PF00676 Dehydrogenase E1 component CPRO_23410 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CPRO_23430 PF03480 Bacterial extracellular solute-binding protein, family 7 CPRO_23430 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CPRO_23440 PF00392 Bacterial regulatory proteins, gntR family CPRO_23440 PF07702 UTRA domain CPRO_23460 PF00586 AIR synthase related protein, N-terminal domain CPRO_23460 PF02769 AIR synthase related protein, C-terminal domain CPRO_23460 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CPRO_23470 PF02843 Phosphoribosylglycinamide synthetase, C domain CPRO_23470 PF02844 Phosphoribosylglycinamide synthetase, N domain CPRO_23470 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CPRO_23480 PF01808 AICARFT/IMPCHase bienzyme CPRO_23480 PF02142 MGS-like domain CPRO_23490 PF00206 Lyase CPRO_23490 PF10397 Adenylosuccinate lyase C-terminus CPRO_23510 PF00551 Formyl transferase CPRO_23530 PF00156 Phosphoribosyl transferase domain CPRO_23540 PF01259 SAICAR synthetase CPRO_23550 PF00731 AIR carboxylase CPRO_23560 PF01979 Amidohydrolase family CPRO_23570 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CPRO_23570 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CPRO_23570 PF02142 MGS-like domain CPRO_23580 PF00175 Oxidoreductase NAD-binding domain CPRO_23580 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B CPRO_23590 PF01180 Dihydroorotate dehydrogenase CPRO_23600 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CPRO_23610 PF00156 Phosphoribosyl transferase domain CPRO_23620 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CPRO_23620 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CPRO_23630 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain CPRO_23630 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain CPRO_23680 PF01594 AI-2E family transporter CPRO_23690 PF01546 Peptidase family M20/M25/M40 CPRO_23690 PF07687 Peptidase dimerisation domain CPRO_23700 PF14622 Ribonuclease-III-like CPRO_23700 PF00035 Double-stranded RNA binding motif CPRO_23710 PF00550 Phosphopantetheine attachment site CPRO_23740 PF00072 Response regulator receiver domain CPRO_23740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPRO_23740 PF01584 CheW-like domain CPRO_23740 PF01627 Hpt domain CPRO_23750 PF01515 Phosphate acetyl/butaryl transferase CPRO_23760 PF00871 Acetokinase family CPRO_23780 PF01783 Ribosomal L32p protein family CPRO_23790 PF02504 Fatty acid synthesis protein CPRO_23810 PF07670 Nucleoside recognition CPRO_23830 PF01467 Cytidylyltransferase-like CPRO_23850 PF00224 Pyruvate kinase, barrel domain CPRO_23850 PF00391 PEP-utilising enzyme, mobile domain CPRO_23850 PF02887 Pyruvate kinase, alpha/beta domain CPRO_23860 PF00365 Phosphofructokinase CPRO_23870 PF02081 Tryptophan RNA-binding attenuator protein CPRO_23880 PF14579 Helix-hairpin-helix motif CPRO_23880 PF01336 OB-fold nucleic acid binding domain CPRO_23880 PF02811 PHP domain CPRO_23880 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CPRO_23880 PF07733 Bacterial DNA polymerase III alpha NTPase domain CPRO_23890 PF12704 MacB-like periplasmic core domain CPRO_23890 PF02687 FtsX-like permease family CPRO_23890 PF00005 ABC transporter CPRO_23900 PF00005 ABC transporter CPRO_23910 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CPRO_23920 PF10371 Domain of unknown function CPRO_23920 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CPRO_23920 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CPRO_23920 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CPRO_23920 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CPRO_23940 PF01668 SmpB protein CPRO_24000 PF00589 Phage integrase family CPRO_24000 PF02899 Phage integrase, N-terminal SAM-like domain CPRO_24030 PF02086 D12 class N6 adenine-specific DNA methyltransferase CPRO_24330 PF01171 PP-loop family CPRO_24330 PF09179 TilS substrate binding domain CPRO_24330 PF11734 TilS substrate C-terminal domain CPRO_24400 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CPRO_24400 PF18277 AbrB C-terminal domain CPRO_24480 PF06114 IrrE N-terminal-like domain CPRO_24520 PF00301 Rubredoxin CPRO_24540 PF00258 Flavodoxin CPRO_24540 PF00301 Rubredoxin CPRO_24540 PF00753 Metallo-beta-lactamase superfamily CPRO_24590 PF04055 Radical SAM superfamily CPRO_24590 PF13186 Iron-sulfur cluster-binding domain CPRO_24620 PF00313 'Cold-shock' DNA-binding domain CPRO_24630 PF00270 DEAD/DEAH box helicase CPRO_24630 PF17191 RecG wedge domain CPRO_24630 PF00271 Helicase conserved C-terminal domain CPRO_24660 PF13684 Dihydroxyacetone kinase family CPRO_24660 PF02734 DAK2 domain CPRO_24670 PF03780 Asp23 family, cell envelope-related function CPRO_24680 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CPRO_24690 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CPRO_24690 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CPRO_24700 PF03480 Bacterial extracellular solute-binding protein, family 7 CPRO_24720 PF01797 Transposase IS200 like CPRO_24880 PF01546 Peptidase family M20/M25/M40 CPRO_24880 PF07687 Peptidase dimerisation domain CPRO_24890 PF00579 tRNA synthetases class I (W and Y) CPRO_24900 PF01965 DJ-1/PfpI family CPRO_24910 PF02899 Phage integrase, N-terminal SAM-like domain CPRO_24910 PF00589 Phage integrase family CPRO_24920 PF01944 Stage II sporulation protein M CPRO_24930 PF00293 NUDIX domain CPRO_24940 PF00155 Aminotransferase class I and II CPRO_24950 PF01244 Membrane dipeptidase (Peptidase family M19) CPRO_24960 PF08769 Sporulation initiation factor Spo0A C terminal CPRO_24960 PF00072 Response regulator receiver domain CPRO_24970 PF05580 SpoIVB peptidase S55 CPRO_24970 PF17820 PDZ domain CPRO_25010 PF00113 Enolase, C-terminal TIM barrel domain CPRO_25010 PF03952 Enolase, N-terminal domain CPRO_25020 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CPRO_25020 PF01676 Metalloenzyme superfamily CPRO_25030 PF00121 Triosephosphate isomerase CPRO_25050 PF00162 Phosphoglycerate kinase CPRO_25060 PF04198 Putative sugar-binding domain CPRO_25090 PF13367 PrsW family intramembrane metalloprotease CPRO_25100 PF12704 MacB-like periplasmic core domain CPRO_25100 PF02687 FtsX-like permease family CPRO_25120 PF00005 ABC transporter CPRO_25140 PF16360 GTP-binding GTPase Middle Region CPRO_25140 PF13167 GTP-binding GTPase N-terminal CPRO_25140 PF01926 50S ribosome-binding GTPase CPRO_25160 PF04070 Domain of unknown function (DUF378) CPRO_25170 PF05193 Peptidase M16 inactive domain CPRO_25170 PF00675 Insulinase (Peptidase family M16) CPRO_25180 PF00013 KH domain CPRO_25180 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CPRO_25180 PF01138 3' exoribonuclease family, domain 1 CPRO_25180 PF03725 3' exoribonuclease family, domain 2 CPRO_25180 PF00575 S1 RNA binding domain CPRO_25190 PF00312 Ribosomal protein S15 CPRO_25210 PF06574 FAD synthetase CPRO_25210 PF01687 Riboflavin kinase CPRO_25220 PF01509 TruB family pseudouridylate synthase (N terminal domain) CPRO_25220 PF16198 tRNA pseudouridylate synthase B C-terminal domain CPRO_25240 PF02033 Ribosome-binding factor A CPRO_25250 PF00009 Elongation factor Tu GTP binding domain CPRO_25250 PF04760 Translation initiation factor IF-2, N-terminal region CPRO_25250 PF11987 Translation-initiation factor 2 CPRO_25270 PF04296 Protein of unknown function (DUF448) CPRO_25280 PF08529 NusA N-terminal domain CPRO_25280 PF00575 S1 RNA binding domain CPRO_25280 PF13184 NusA-like KH domain CPRO_25300 PF04474 Protein of unknown function (DUF554) CPRO_25310 PF00005 ABC transporter CPRO_25320 PF00528 Binding-protein-dependent transport system inner membrane component CPRO_25330 PF00497 Bacterial extracellular solute-binding proteins, family 3 CPRO_25350 PF00497 Bacterial extracellular solute-binding proteins, family 3 CPRO_25380 PF02401 LytB protein CPRO_25380 PF00575 S1 RNA binding domain CPRO_25390 PF01553 Acyltransferase CPRO_25400 PF02224 Cytidylate kinase CPRO_25420 PF00300 Histidine phosphatase superfamily (branch 1) CPRO_25430 PF01479 S4 domain CPRO_25430 PF00849 RNA pseudouridylate synthase CPRO_25440 PF00768 D-alanyl-D-alanine carboxypeptidase CPRO_25440 PF07943 Penicillin-binding protein 5, C-terminal domain CPRO_25460 PF04079 Segregation and condensation complex subunit ScpB CPRO_25470 PF02616 Segregation and condensation protein ScpA CPRO_25530 PF00171 Aldehyde dehydrogenase family CPRO_25570 PF01472 PUA domain CPRO_25570 PF00696 Amino acid kinase family CPRO_25600 PF00183 Hsp90 protein CPRO_25620 PF13722 5TM C-terminal transporter carbon starvation CstA CPRO_25620 PF02554 Carbon starvation protein CstA CPRO_25630 PF03372 Endonuclease/Exonuclease/phosphatase family CPRO_25650 PF00795 Carbon-nitrogen hydrolase CPRO_25660 PF01451 Low molecular weight phosphotyrosine protein phosphatase CPRO_25670 PF00290 Tryptophan synthase alpha chain CPRO_25680 PF00291 Pyridoxal-phosphate dependent enzyme CPRO_25690 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CPRO_25710 PF00591 Glycosyl transferase family, a/b domain CPRO_25710 PF02885 Glycosyl transferase family, helical bundle domain CPRO_25720 PF00117 Glutamine amidotransferase class-I CPRO_25740 PF02567 Phenazine biosynthesis-like protein CPRO_25750 PF00392 Bacterial regulatory proteins, gntR family CPRO_25750 PF00155 Aminotransferase class I and II CPRO_25760 PF01545 Cation efflux family CPRO_25760 PF16916 Dimerisation domain of Zinc Transporter CPRO_25770 PF00226 DnaJ domain CPRO_25770 PF01556 DnaJ C terminal domain CPRO_25770 PF00684 DnaJ central domain CPRO_25780 PF00012 Hsp70 protein CPRO_25790 PF01025 GrpE CPRO_25800 PF01628 HrcA protein C terminal domain CPRO_25810 PF04055 Radical SAM superfamily CPRO_25810 PF06969 HemN C-terminal domain CPRO_25820 PF00884 Sulfatase CPRO_25840 PF00291 Pyridoxal-phosphate dependent enzyme CPRO_25860 PF01381 Helix-turn-helix CPRO_25880 PF01906 Putative heavy-metal-binding CPRO_25910 PF00557 Metallopeptidase family M24 CPRO_25910 PF05195 Aminopeptidase P, N-terminal domain CPRO_25920 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CPRO_25920 PF02272 DHHA1 domain CPRO_25920 PF01411 tRNA synthetases class II (A) CPRO_25930 PF02645 Uncharacterised protein, DegV family COG1307 CPRO_25960 PF02190 ATP-dependent protease La (LON) substrate-binding domain CPRO_25960 PF00004 ATPase family associated with various cellular activities (AAA) CPRO_25960 PF05362 Lon protease (S16) C-terminal proteolytic domain CPRO_25970 PF00004 ATPase family associated with various cellular activities (AAA) CPRO_25970 PF05362 Lon protease (S16) C-terminal proteolytic domain CPRO_25980 PF00009 Elongation factor Tu GTP binding domain CPRO_25980 PF03143 Elongation factor Tu C-terminal domain CPRO_25980 PF03144 Elongation factor Tu domain 2 CPRO_25990 PF00679 Elongation factor G C-terminus CPRO_25990 PF03144 Elongation factor Tu domain 2 CPRO_25990 PF14492 Elongation Factor G, domain II CPRO_25990 PF03764 Elongation factor G, domain IV CPRO_25990 PF00009 Elongation factor Tu GTP binding domain CPRO_26000 PF00177 Ribosomal protein S7p/S5e CPRO_26020 PF12704 MacB-like periplasmic core domain CPRO_26020 PF00005 ABC transporter CPRO_26020 PF02687 FtsX-like permease family CPRO_26040 PF08361 MAATS-type transcriptional repressor, C-terminal region CPRO_26040 PF00440 Bacterial regulatory proteins, tetR family CPRO_26050 PF05000 RNA polymerase Rpb1, domain 4 CPRO_26050 PF04998 RNA polymerase Rpb1, domain 5 CPRO_26050 PF00623 RNA polymerase Rpb1, domain 2 CPRO_26050 PF04997 RNA polymerase Rpb1, domain 1 CPRO_26050 PF04983 RNA polymerase Rpb1, domain 3 CPRO_26070 PF02677 Epoxyqueuosine reductase QueH CPRO_26090 PF16320 Ribosomal protein L7/L12 dimerisation domain CPRO_26090 PF00542 Ribosomal protein L7/L12 C-terminal domain CPRO_26100 PF00466 Ribosomal protein L10 CPRO_26120 PF00298 Ribosomal protein L11, RNA binding domain CPRO_26120 PF03946 Ribosomal protein L11, N-terminal domain CPRO_26130 PF02357 Transcription termination factor nusG CPRO_26130 PF00467 KOW motif CPRO_26170 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CPRO_26170 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CPRO_26190 PF03572 Peptidase family S41 CPRO_26190 PF13180 PDZ domain CPRO_26200 PF18075 FtsX extracellular domain CPRO_26200 PF02687 FtsX-like permease family CPRO_26210 PF00005 ABC transporter CPRO_26220 PF07905 Purine catabolism regulatory protein-like family CPRO_26220 PF17853 GGDEF-like domain CPRO_26220 PF13556 PucR C-terminal helix-turn-helix domain CPRO_26230 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CPRO_26230 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CPRO_26240 PF03808 Glycosyl transferase WecB/TagA/CpsF family CPRO_26250 PF04101 Glycosyltransferase family 28 C-terminal domain CPRO_26250 PF03033 Glycosyltransferase family 28 N-terminal domain CPRO_26280 PF00534 Glycosyl transferases group 1 CPRO_26280 PF13439 Glycosyltransferase Family 4 CPRO_26290 PF03023 Lipid II flippase MurJ CPRO_26340 PF00485 Phosphoribulokinase / Uridine kinase family CPRO_26360 PF03816 Cell envelope-related transcriptional attenuator domain CPRO_26380 PF00209 Sodium:neurotransmitter symporter family CPRO_26390 PF00571 CBS domain CPRO_26390 PF03448 MgtE intracellular N domain CPRO_26390 PF01769 Divalent cation transporter CPRO_26410 PF00772 DnaB-like helicase N terminal domain CPRO_26410 PF03796 DnaB-like helicase C terminal domain CPRO_26420 PF01281 Ribosomal protein L9, N-terminal domain CPRO_26420 PF03948 Ribosomal protein L9, C-terminal domain CPRO_26430 PF01368 DHH family CPRO_26430 PF02272 DHHA1 domain CPRO_26470 PF07726 ATPase family associated with various cellular activities (AAA) CPRO_26470 PF17863 AAA lid domain CPRO_26480 PF01594 AI-2E family transporter CPRO_26510 PF15714 Stage V sporulation protein T C-terminal, transcription factor CPRO_26510 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CPRO_26520 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CPRO_26520 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CPRO_26530 PF02660 Glycerol-3-phosphate acyltransferase CPRO_26540 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CPRO_26540 PF01926 50S ribosome-binding GTPase CPRO_26560 PF01351 Ribonuclease HII CPRO_26580 PF00753 Metallo-beta-lactamase superfamily CPRO_26580 PF17770 Ribonuclease J C-terminal domain CPRO_26580 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CPRO_26590 PF06949 Protein of unknown function (DUF1292) CPRO_26600 PF03652 Holliday junction resolvase CPRO_26620 PF01938 TRAM domain CPRO_26620 PF04055 Radical SAM superfamily CPRO_26620 PF00919 Uncharacterized protein family UPF0004 CPRO_26660 PF01048 Phosphorylase superfamily CPRO_26670 PF07722 Peptidase C26 CPRO_26680 PF00924 Mechanosensitive ion channel CPRO_26730 PF00403 Heavy-metal-associated domain CPRO_26740 PF01022 Bacterial regulatory protein, arsR family CPRO_26750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPRO_26750 PF03466 LysR substrate binding domain CPRO_26780 PF03461 TRCF domain CPRO_26780 PF17757 UvrB interaction domain CPRO_26780 PF00270 DEAD/DEAH box helicase CPRO_26780 PF02559 CarD-like/TRCF domain CPRO_26780 PF00271 Helicase conserved C-terminal domain CPRO_26790 PF01195 Peptidyl-tRNA hydrolase CPRO_26800 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CPRO_26800 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CPRO_26820 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CPRO_26820 PF14572 Phosphoribosyl synthetase-associated domain CPRO_26830 PF00132 Bacterial transferase hexapeptide (six repeats) CPRO_26830 PF12804 MobA-like NTP transferase domain CPRO_26840 PF00483 Nucleotidyl transferase CPRO_26860 PF02875 Mur ligase family, glutamate ligase domain CPRO_26860 PF01225 Mur ligase family, catalytic domain CPRO_26860 PF08245 Mur ligase middle domain CPRO_26870 PF02590 Predicted SPOUT methyltransferase CPRO_26880 PF00753 Metallo-beta-lactamase superfamily CPRO_26890 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CPRO_26930 PF00672 HAMP domain CPRO_26930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPRO_26930 PF13426 PAS domain CPRO_26930 PF00512 His Kinase A (phospho-acceptor) domain CPRO_26940 PF00072 Response regulator receiver domain CPRO_26940 PF00486 Transcriptional regulatory protein, C terminal CPRO_26950 PF00072 Response regulator receiver domain CPRO_26950 PF09308 LuxQ, periplasmic CPRO_26950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPRO_26950 PF00512 His Kinase A (phospho-acceptor) domain CPRO_26960 PF01869 BadF/BadG/BcrA/BcrD ATPase family CPRO_26980 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CPRO_26990 PF05175 Methyltransferase small domain CPRO_27000 PF04468 PSP1 C-terminal conserved region CPRO_27010 PF12169 DNA polymerase III subunits gamma and tau domain III CPRO_27020 PF06153 Cyclic-di-AMP receptor CPRO_27030 PF02223 Thymidylate kinase CPRO_27040 PF11638 DnaA N-terminal domain CPRO_27040 PF00308 Bacterial dnaA protein CPRO_27040 PF08299 Bacterial dnaA protein helix-turn-helix CPRO_27060 PF00953 Glycosyl transferase family 4 CPRO_27080 PF02502 Ribose/Galactose Isomerase CPRO_27090 PF01300 Telomere recombination CPRO_27090 PF03481 Putative GTP-binding controlling metal-binding CPRO_27100 PF02810 SEC-C motif CPRO_27100 PF07517 SecA DEAD-like domain CPRO_27100 PF07516 SecA Wing and Scaffold domain CPRO_27100 PF01043 SecA preprotein cross-linking domain CPRO_27140 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CPRO_27150 PF04101 Glycosyltransferase family 28 C-terminal domain CPRO_27150 PF03033 Glycosyltransferase family 28 N-terminal domain CPRO_27170 PF01230 HIT domain CPRO_27210 PF13091 PLD-like domain CPRO_27210 PF13396 Phospholipase_D-nuclease N-terminal CPRO_27230 PF03073 TspO/MBR family CPRO_27240 PF00962 Adenosine/AMP deaminase CPRO_27250 PF08903 Domain of unknown function (DUF1846) CPRO_27260 PF00156 Phosphoribosyl transferase domain CPRO_27270 PF13538 UvrD-like helicase C-terminal domain CPRO_27270 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain CPRO_27270 PF14490 Helix-hairpin-helix containing domain CPRO_27280 PF00438 S-adenosylmethionine synthetase, N-terminal domain CPRO_27280 PF02772 S-adenosylmethionine synthetase, central domain CPRO_27280 PF02773 S-adenosylmethionine synthetase, C-terminal domain CPRO_27310 PF18357 Diphteria toxin repressor SH3 domain CPRO_27310 PF02742 Iron dependent repressor, metal binding and dimerisation domain CPRO_27310 PF01325 Iron dependent repressor, N-terminal DNA binding domain CPRO_27330 PF00563 EAL domain CPRO_27330 PF03707 Bacterial signalling protein N terminal repeat CPRO_27330 PF00990 Diguanylate cyclase, GGDEF domain CPRO_27350 PF05726 Pirin C-terminal cupin domain CPRO_27350 PF02678 Pirin CPRO_27360 PF12802 MarR family CPRO_27370 PF01522 Polysaccharide deacetylase CPRO_27370 PF11738 Protein of unknown function (DUF3298) CPRO_27370 PF13739 Deacetylase PdaC CPRO_27390 PF12838 4Fe-4S dicluster domain CPRO_27400 PF04607 Region found in RelA / SpoT proteins CPRO_27400 PF13291 ACT domain CPRO_27400 PF02824 TGS domain CPRO_27420 PF00860 Permease family CPRO_27430 PF01207 Dihydrouridine synthase (Dus) CPRO_27480 PF02237 Biotin protein ligase C terminal domain CPRO_27480 PF03099 Biotin/lipoate A/B protein ligase family CPRO_27480 PF08279 HTH domain CPRO_27500 PF01434 Peptidase family M41 CPRO_27500 PF17862 AAA+ lid domain CPRO_27500 PF06480 FtsH Extracellular CPRO_27500 PF00004 ATPase family associated with various cellular activities (AAA) CPRO_27510 PF00156 Phosphoribosyl transferase domain CPRO_27520 PF11734 TilS substrate C-terminal domain CPRO_27520 PF01171 PP-loop family CPRO_27560 PF00753 Metallo-beta-lactamase superfamily CPRO_27560 PF00301 Rubredoxin CPRO_27560 PF00258 Flavodoxin CPRO_27570 PF00342 Phosphoglucose isomerase CPRO_27590 PF00392 Bacterial regulatory proteins, gntR family CPRO_27590 PF07729 FCD domain CPRO_27600 PF08544 GHMP kinases C terminal CPRO_27600 PF00288 GHMP kinases N terminal domain CPRO_27610 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CPRO_27610 PF01872 RibD C-terminal domain CPRO_27620 PF00677 Lumazine binding domain CPRO_27630 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CPRO_27630 PF00925 GTP cyclohydrolase II CPRO_27640 PF00885 6,7-dimethyl-8-ribityllumazine synthase CPRO_27650 PF01594 AI-2E family transporter CPRO_27670 PF00291 Pyridoxal-phosphate dependent enzyme CPRO_27680 PF00557 Metallopeptidase family M24 CPRO_27690 PF12832 MFS_1 like family CPRO_27700 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CPRO_27700 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CPRO_27710 PF08447 PAS fold CPRO_27710 PF13426 PAS domain CPRO_27710 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CPRO_28060 PF13495 Phage integrase, N-terminal SAM-like domain CPRO_28060 PF00589 Phage integrase family CPRO_28080 PF03956 Lysine exporter LysO CPRO_28100 PF01212 Beta-eliminating lyase CPRO_28110 PF12848 ABC transporter CPRO_28110 PF00005 ABC transporter CPRO_28130 PF00899 ThiF family CPRO_28150 PF00465 Iron-containing alcohol dehydrogenase CPRO_28160 PF01012 Electron transfer flavoprotein domain CPRO_28160 PF00766 Electron transfer flavoprotein FAD-binding domain CPRO_28170 PF01012 Electron transfer flavoprotein domain CPRO_28180 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CPRO_28180 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CPRO_28180 PF02770 Acyl-CoA dehydrogenase, middle domain CPRO_28190 PF00158 Sigma-54 interaction domain CPRO_28190 PF00874 PRD domain CPRO_28190 PF03610 PTS system fructose IIA component CPRO_28200 PF03772 Competence protein CPRO_28200 PF13567 Domain of unknown function (DUF4131) CPRO_28200 PF00753 Metallo-beta-lactamase superfamily CPRO_28210 PF01434 Peptidase family M41 CPRO_28210 PF06480 FtsH Extracellular CPRO_28210 PF17862 AAA+ lid domain CPRO_28210 PF00004 ATPase family associated with various cellular activities (AAA) CPRO_28230 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CPRO_28250 PF01741 Large-conductance mechanosensitive channel, MscL CPRO_28260 PF00005 ABC transporter CPRO_28300 PF07195 Flagellar hook-associated protein 2 C-terminus CPRO_28300 PF02465 Flagellar hook-associated protein 2 N-terminus CPRO_28310 PF13614 AAA domain CPRO_28330 PF01584 CheW-like domain CPRO_28330 PF00072 Response regulator receiver domain CPRO_28340 PF03975 CheD chemotactic sensory transduction CPRO_28350 PF04509 CheC-like family CPRO_28360 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CPRO_28360 PF00460 Flagella basal body rod protein CPRO_28370 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CPRO_28370 PF00460 Flagella basal body rod protein CPRO_28380 PF04542 Sigma-70 region 2 CPRO_28380 PF04545 Sigma-70, region 4 CPRO_28380 PF04539 Sigma-70 region 3 CPRO_28390 PF00771 FHIPEP family CPRO_28400 PF01312 FlhB HrpN YscU SpaS Family CPRO_28410 PF01311 Bacterial export proteins, family 1 CPRO_28420 PF01313 Bacterial export proteins, family 3 CPRO_28430 PF00813 FliP family CPRO_28450 PF00072 Response regulator receiver domain CPRO_28460 PF04509 CheC-like family CPRO_28460 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CPRO_28480 PF00691 OmpA family CPRO_28480 PF13677 Membrane MotB of proton-channel complex MotA/MotB CPRO_28490 PF01618 MotA/TolQ/ExbB proton channel family CPRO_28510 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CPRO_28510 PF00460 Flagella basal body rod protein CPRO_28570 PF01312 FlhB HrpN YscU SpaS Family CPRO_28590 PF02895 Signal transducing histidine kinase, homodimeric domain CPRO_28590 PF09078 CheY binding CPRO_28590 PF01627 Hpt domain CPRO_28590 PF01584 CheW-like domain CPRO_28590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPRO_28600 PF01584 CheW-like domain CPRO_28610 PF03705 CheR methyltransferase, all-alpha domain CPRO_28610 PF01739 CheR methyltransferase, SAM binding domain CPRO_28620 PF00072 Response regulator receiver domain CPRO_28620 PF01339 CheB methylesterase CPRO_28630 PF04316 Anti-sigma-28 factor, FlgM CPRO_28680 PF02623 FliW protein CPRO_28690 PF02599 Global regulator protein family CPRO_28710 PF00005 ABC transporter CPRO_28720 PF00528 Binding-protein-dependent transport system inner membrane component CPRO_28730 PF00497 Bacterial extracellular solute-binding proteins, family 3 CPRO_28750 PF10502 Signal peptidase, peptidase S26 CPRO_28860 PF00343 Carbohydrate phosphorylase CPRO_28910 PF05175 Methyltransferase small domain CPRO_28910 PF17827 PrmC N-terminal domain CPRO_28920 PF07136 Protein of unknown function (DUF1385) CPRO_28930 PF01197 Ribosomal protein L31 CPRO_28940 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CPRO_28940 PF07498 Rho termination factor, N-terminal domain CPRO_28940 PF07497 Rho termination factor, RNA-binding domain CPRO_28990 PF03030 Inorganic H+ pyrophosphatase CPRO_29010 PF01569 PAP2 superfamily CPRO_29020 PF02659 Putative manganese efflux pump CPRO_29090 PF01479 S4 domain CPRO_29100 PF00216 Bacterial DNA-binding protein CPRO_29110 PF03819 MazG nucleotide pyrophosphohydrolase domain CPRO_29120 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B CPRO_29120 PF00175 Oxidoreductase NAD-binding domain CPRO_29130 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPRO_29130 PF13247 4Fe-4S dicluster domain CPRO_29130 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CPRO_29140 PF00753 Metallo-beta-lactamase superfamily CPRO_29150 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CPRO_29150 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CPRO_29180 PF00692 dUTPase CPRO_29190 PF04294 VanW like protein CPRO_29200 PF03180 NLPA lipoprotein CPRO_29210 PF00528 Binding-protein-dependent transport system inner membrane component CPRO_29220 PF00005 ABC transporter CPRO_29220 PF09383 NIL domain CPRO_29240 PF03816 Cell envelope-related transcriptional attenuator domain CPRO_29260 PF02581 Thiamine monophosphate synthase CPRO_29260 PF08543 Phosphomethylpyrimidine kinase CPRO_29300 PF00270 DEAD/DEAH box helicase CPRO_29300 PF00271 Helicase conserved C-terminal domain CPRO_29310 PF08239 Bacterial SH3 domain CPRO_29310 PF01520 N-acetylmuramoyl-L-alanine amidase CPRO_29320 PF00266 Aminotransferase class-V CPRO_29330 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CPRO_29330 PF01842 ACT domain CPRO_29330 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CPRO_29360 PF02350 UDP-N-acetylglucosamine 2-epimerase CPRO_29370 PF01557 Fumarylacetoacetate (FAA) hydrolase family CPRO_29380 PF00764 Arginosuccinate synthase CPRO_29430 PF13419 Haloacid dehalogenase-like hydrolase CPRO_29450 PF00155 Aminotransferase class I and II CPRO_29460 PF00155 Aminotransferase class I and II CPRO_29470 PF01381 Helix-turn-helix CPRO_29470 PF07883 Cupin domain CPRO_29480 PF08402 TOBE domain CPRO_29480 PF00005 ABC transporter CPRO_29490 PF00528 Binding-protein-dependent transport system inner membrane component CPRO_29500 PF00528 Binding-protein-dependent transport system inner membrane component CPRO_29510 PF13416 Bacterial extracellular solute-binding protein CPRO_29550 PF00004 ATPase family associated with various cellular activities (AAA) CPRO_29550 PF06480 FtsH Extracellular CPRO_29550 PF17862 AAA+ lid domain CPRO_29550 PF01434 Peptidase family M41 CPRO_29570 PF01925 Sulfite exporter TauE/SafE CPRO_29580 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CPRO_29580 PF01276 Orn/Lys/Arg decarboxylase, major domain CPRO_29600 PF07729 FCD domain CPRO_29600 PF00392 Bacterial regulatory proteins, gntR family CPRO_29610 PF00571 CBS domain CPRO_29610 PF00005 ABC transporter CPRO_29620 PF00528 Binding-protein-dependent transport system inner membrane component CPRO_29630 PF00528 Binding-protein-dependent transport system inner membrane component CPRO_29640 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CPRO_29650 PF01209 ubiE/COQ5 methyltransferase family CPRO_29660 PF02535 ZIP Zinc transporter CPRO_29670 PF00440 Bacterial regulatory proteins, tetR family CPRO_29670 PF08361 MAATS-type transcriptional repressor, C-terminal region CPRO_29680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPRO_29680 PF03466 LysR substrate binding domain CPRO_29690 PF03601 Conserved hypothetical protein 698 CPRO_29750 PF02457 DisA bacterial checkpoint controller nucleotide-binding CPRO_29760 PF01336 OB-fold nucleic acid binding domain CPRO_29760 PF00152 tRNA synthetases class II (D, K and N) CPRO_29770 PF03449 Transcription elongation factor, N-terminal CPRO_29770 PF01272 Transcription elongation factor, GreA/GreB, C-term CPRO_29790 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CPRO_29790 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CPRO_29790 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CPRO_29790 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CPRO_29790 PF10371 Domain of unknown function CPRO_29820 PF07883 Cupin domain CPRO_29830 PF03807 NADP oxidoreductase coenzyme F420-dependent CPRO_29830 PF14748 Pyrroline-5-carboxylate reductase dimerisation CPRO_29840 PF03960 ArsC family CPRO_29870 PF03167 Uracil DNA glycosylase superfamily CPRO_29880 PF01694 Rhomboid family CPRO_29930 PF14602 Hexapeptide repeat of succinyl-transferase CPRO_29930 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal CPRO_29930 PF00132 Bacterial transferase hexapeptide (six repeats) CPRO_29940 PF07687 Peptidase dimerisation domain CPRO_29940 PF01546 Peptidase family M20/M25/M40 CPRO_29970 PF00873 AcrB/AcrD/AcrF family CPRO_30060 PF00512 His Kinase A (phospho-acceptor) domain CPRO_30060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPRO_30070 PF00486 Transcriptional regulatory protein, C terminal CPRO_30070 PF00072 Response regulator receiver domain CPRO_30190 PF02195 ParB-like nuclease domain CPRO_30190 PF17762 HTH domain found in ParB protein CPRO_30200 PF02527 rRNA small subunit methyltransferase G CPRO_30230 PF12631 MnmE helical domain CPRO_30230 PF01926 50S ribosome-binding GTPase CPRO_30230 PF10396 GTP-binding protein TrmE N-terminus CPRO_30240 PF01424 R3H domain CPRO_30240 PF14804 Jag N-terminus CPRO_30250 PF02096 60Kd inner membrane protein CPRO_30260 PF01809 Putative membrane protein insertion efficiency factor CPRO_30280 PF00468 Ribosomal protein L34