locus-tag class description ACIS_00003 PF00731 AIR carboxylase ACIS_00006 PF01098 Cell cycle protein ACIS_00007 PF00216 Bacterial DNA-binding protein ACIS_00008 PF13411 MerR HTH family regulatory protein ACIS_00011 PF01225 Mur ligase family, catalytic domain ACIS_00011 PF02875 Mur ligase family, glutamate ligase domain ACIS_00011 PF08245 Mur ligase middle domain ACIS_00012 PF00579 tRNA synthetases class I (W and Y) ACIS_00013 PF01025 GrpE ACIS_00015 PF01872 RibD C-terminal domain ACIS_00015 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ACIS_00016 PF00117 Glutamine amidotransferase class-I ACIS_00016 PF06418 CTP synthase N-terminus ACIS_00019 PF02899 Phage integrase, N-terminal SAM-like domain ACIS_00019 PF00589 Phage integrase family ACIS_00020 PF00005 ABC transporter ACIS_00022 PF00390 Malic enzyme, N-terminal domain ACIS_00022 PF01515 Phosphate acetyl/butaryl transferase ACIS_00022 PF03949 Malic enzyme, NAD binding domain ACIS_00027 PF00361 Proton-conducting membrane transporter ACIS_00034 PF00083 Sugar (and other) transporter ACIS_00034 PF08946 Osmosensory transporter coiled coil ACIS_00035 PF00886 Ribosomal protein S16 ACIS_00037 PF14602 Hexapeptide repeat of succinyl-transferase ACIS_00037 PF00132 Bacterial transferase hexapeptide (six repeats) ACIS_00037 PF12804 MobA-like NTP transferase domain ACIS_00040 PF01409 tRNA synthetases class II core domain (F) ACIS_00040 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ACIS_00041 PF00453 Ribosomal protein L20 ACIS_00042 PF01632 Ribosomal protein L35 ACIS_00045 PF07497 Rho termination factor, RNA-binding domain ACIS_00045 PF07498 Rho termination factor, N-terminal domain ACIS_00045 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACIS_00054 PF00749 tRNA synthetases class I (E and Q), catalytic domain ACIS_00056 PF05690 Thiazole biosynthesis protein ThiG ACIS_00061 PF13416 Bacterial extracellular solute-binding protein ACIS_00066 PF03477 ATP cone domain ACIS_00068 PF01617 Surface antigen ACIS_00071 PF01386 Ribosomal L25p family ACIS_00071 PF14693 Ribosomal protein TL5, C-terminal domain ACIS_00072 PF01195 Peptidyl-tRNA hydrolase ACIS_00073 PF13537 Glutamine amidotransferase domain ACIS_00073 PF00156 Phosphoribosyl transferase domain ACIS_00074 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family ACIS_00075 PF00271 Helicase conserved C-terminal domain ACIS_00075 PF00270 DEAD/DEAH box helicase ACIS_00075 PF17191 RecG wedge domain ACIS_00076 PF02441 Flavoprotein ACIS_00076 PF04127 DNA / pantothenate metabolism flavoprotein ACIS_00077 PF12631 MnmE helical domain ACIS_00077 PF10396 GTP-binding protein TrmE N-terminus ACIS_00077 PF01926 50S ribosome-binding GTPase ACIS_00078 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal ACIS_00078 PF14602 Hexapeptide repeat of succinyl-transferase ACIS_00078 PF00132 Bacterial transferase hexapeptide (six repeats) ACIS_00080 PF13742 OB-fold nucleic acid binding domain ACIS_00080 PF02601 Exonuclease VII, large subunit ACIS_00081 PF00162 Phosphoglycerate kinase ACIS_00084 PF01678 Diaminopimelate epimerase ACIS_00088 PF01209 ubiE/COQ5 methyltransferase family ACIS_00089 PF00925 GTP cyclohydrolase II ACIS_00092 PF03743 Bacterial conjugation TrbI-like protein ACIS_00093 PF00437 Type II/IV secretion system protein ACIS_00094 PF02534 Type IV secretory system Conjugative DNA transfer ACIS_00095 PF00707 Translation initiation factor IF-3, C-terminal domain ACIS_00095 PF05198 Translation initiation factor IF-3, N-terminal domain ACIS_00096 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ACIS_00096 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ACIS_00097 PF11953 Domain of unknown function (DUF3470) ACIS_00097 PF00037 4Fe-4S binding domain ACIS_00098 PF02445 Quinolinate synthetase A protein ACIS_00099 PF08241 Methyltransferase domain ACIS_00100 PF04860 Phage portal protein ACIS_00102 PF00571 CBS domain ACIS_00102 PF03471 Transporter associated domain ACIS_00103 PF01208 Uroporphyrinogen decarboxylase (URO-D) ACIS_00104 PF00510 Cytochrome c oxidase subunit III ACIS_00105 PF02075 Crossover junction endodeoxyribonuclease RuvC ACIS_00106 PF02660 Glycerol-3-phosphate acyltransferase ACIS_00107 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ACIS_00107 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ACIS_00108 PF00226 DnaJ domain ACIS_00108 PF00684 DnaJ central domain ACIS_00108 PF01556 DnaJ C terminal domain ACIS_00109 PF02092 Glycyl-tRNA synthetase beta subunit ACIS_00109 PF05746 DALR anticodon binding domain ACIS_00110 PF02091 Glycyl-tRNA synthetase alpha subunit ACIS_00112 PF01494 FAD binding domain ACIS_00113 PF00438 S-adenosylmethionine synthetase, N-terminal domain ACIS_00113 PF02773 S-adenosylmethionine synthetase, C-terminal domain ACIS_00113 PF02772 S-adenosylmethionine synthetase, central domain ACIS_00114 PF01098 Cell cycle protein ACIS_00119 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ACIS_00119 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ACIS_00121 PF12170 DNA polymerase III tau subunit V interacting with alpha ACIS_00121 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding ACIS_00121 PF12169 DNA polymerase III subunits gamma and tau domain III ACIS_00123 PF02575 YbaB/EbfC DNA-binding family ACIS_00124 PF01118 Semialdehyde dehydrogenase, NAD binding domain ACIS_00124 PF02774 Semialdehyde dehydrogenase, dimerisation domain ACIS_00125 PF01027 Inhibitor of apoptosis-promoting Bax1 ACIS_00126 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ACIS_00127 PF00707 Translation initiation factor IF-3, C-terminal domain ACIS_00127 PF05198 Translation initiation factor IF-3, N-terminal domain ACIS_00128 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ACIS_00128 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ACIS_00128 PF03129 Anticodon binding domain ACIS_00129 PF00994 Probable molybdopterin binding domain ACIS_00129 PF18146 Damage-inducible protein CinA KH domain ACIS_00129 PF02464 Competence-damaged protein ACIS_00130 PF01245 Ribosomal protein L19 ACIS_00131 PF01746 tRNA (Guanine-1)-methyltransferase ACIS_00132 PF01782 RimM N-terminal domain ACIS_00132 PF05239 PRC-barrel domain ACIS_00133 PF17762 HTH domain found in ParB protein ACIS_00133 PF02195 ParB-like nuclease domain ACIS_00134 PF13614 AAA domain ACIS_00135 PF02130 Uncharacterized protein family UPF0054 ACIS_00137 PF12327 FtsZ family, C-terminal domain ACIS_00137 PF00091 Tubulin/FtsZ family, GTPase domain ACIS_00141 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ACIS_00154 PF02355 Protein export membrane protein ACIS_00155 PF02151 UvrB/uvrC motif ACIS_00155 PF12344 Ultra-violet resistance protein B ACIS_00155 PF00271 Helicase conserved C-terminal domain ACIS_00155 PF17757 UvrB interaction domain ACIS_00155 PF04851 Type III restriction enzyme, res subunit ACIS_00164 PF03167 Uracil DNA glycosylase superfamily ACIS_00165 PF01327 Polypeptide deformylase ACIS_00167 PF01649 Ribosomal protein S20 ACIS_00169 PF01790 Prolipoprotein diacylglyceryl transferase ACIS_00170 PF03023 Lipid II flippase MurJ ACIS_00180 PF02463 RecF/RecN/SMC N terminal domain ACIS_00181 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ACIS_00181 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ACIS_00186 PF01367 5'-3' exonuclease, C-terminal SAM fold ACIS_00186 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ACIS_00186 PF00476 DNA polymerase family A ACIS_00187 PF00834 Ribulose-phosphate 3 epimerase family ACIS_00188 PF02405 Permease MlaE ACIS_00189 PF00005 ABC transporter ACIS_00192 PF00348 Polyprenyl synthetase ACIS_00193 PF00953 Glycosyl transferase family 4 ACIS_00193 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ACIS_00194 PF00120 Glutamine synthetase, catalytic domain ACIS_00194 PF03951 Glutamine synthetase, beta-Grasp domain ACIS_00196 PF00579 tRNA synthetases class I (W and Y) ACIS_00197 PF00155 Aminotransferase class I and II ACIS_00199 PF02021 Uncharacterised protein family UPF0102 ACIS_00200 PF07549 SecD/SecF GG Motif ACIS_00200 PF02355 Protein export membrane protein ACIS_00201 PF00905 Penicillin binding protein transpeptidase domain ACIS_00201 PF03717 Penicillin-binding Protein dimerisation domain ACIS_00202 PF01791 DeoC/LacD family aldolase ACIS_00204 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ACIS_00204 PF00364 Biotin-requiring enzyme ACIS_00204 PF02817 e3 binding domain ACIS_00208 PF00117 Glutamine amidotransferase class-I ACIS_00208 PF00958 GMP synthase C terminal domain ACIS_00209 PF00285 Citrate synthase, C-terminal domain ACIS_00212 PF12704 MacB-like periplasmic core domain ACIS_00212 PF02687 FtsX-like permease family ACIS_00217 PF00213 ATP synthase delta (OSCP) subunit ACIS_00219 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACIS_00219 PF00306 ATP synthase alpha/beta chain, C terminal domain ACIS_00219 PF02874 ATP synthase alpha/beta family, beta-barrel domain ACIS_00220 PF01272 Transcription elongation factor, GreA/GreB, C-term ACIS_00220 PF03449 Transcription elongation factor, N-terminal ACIS_00221 PF00925 GTP cyclohydrolase II ACIS_00221 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ACIS_00222 PF01668 SmpB protein ACIS_00223 PF00133 tRNA synthetases class I (I, L, M and V) ACIS_00223 PF08264 Anticodon-binding domain of tRNA ACIS_00224 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal ACIS_00224 PF01578 Cytochrome C assembly protein ACIS_00225 PF01571 Aminomethyltransferase folate-binding domain ACIS_00228 PF00154 recA bacterial DNA recombination protein ACIS_00229 PF01617 Surface antigen ACIS_00235 PF01381 Helix-turn-helix ACIS_00236 PF00334 Nucleoside diphosphate kinase ACIS_00237 PF13735 tRNA nucleotidyltransferase domain 2 putative ACIS_00237 PF12627 Probable RNA and SrmB- binding site of polymerase A ACIS_00237 PF01743 Poly A polymerase head domain ACIS_00240 PF01368 DHH family ACIS_00240 PF02272 DHHA1 domain ACIS_00240 PF17768 RecJ OB domain ACIS_00240 PF10141 Single-strand DNA-specific exonuclease, C terminal domain ACIS_00241 PF00180 Isocitrate/isopropylmalate dehydrogenase ACIS_00241 PF18324 Hypothetical protein TT1725 ACIS_00243 PF02881 SRP54-type protein, helical bundle domain ACIS_00243 PF00448 SRP54-type protein, GTPase domain ACIS_00245 PF01258 Prokaryotic dksA/traR C4-type zinc finger ACIS_00247 PF01545 Cation efflux family ACIS_00249 PF07517 SecA DEAD-like domain ACIS_00249 PF01043 SecA preprotein cross-linking domain ACIS_00249 PF07516 SecA Wing and Scaffold domain ACIS_00249 PF02810 SEC-C motif ACIS_00250 PF06480 FtsH Extracellular ACIS_00250 PF01434 Peptidase family M41 ACIS_00250 PF00004 ATPase family associated with various cellular activities (AAA) ACIS_00250 PF17862 AAA+ lid domain ACIS_00251 PF01171 PP-loop family ACIS_00252 PF02386 Cation transport protein ACIS_00253 PF02491 SHS2 domain inserted in FTSA ACIS_00256 PF00137 ATP synthase subunit C ACIS_00258 PF00119 ATP synthase A chain ACIS_00259 PF13685 Iron-containing alcohol dehydrogenase ACIS_00261 PF02104 SURF1 family ACIS_00262 PF01464 Transglycosylase SLT domain ACIS_00263 PF00115 Cytochrome C and Quinol oxidase polypeptide I ACIS_00264 PF01066 CDP-alcohol phosphatidyltransferase ACIS_00265 PF02142 MGS-like domain ACIS_00265 PF01808 AICARFT/IMPCHase bienzyme ACIS_00266 PF07977 FabA-like domain ACIS_00268 PF01103 Surface antigen ACIS_00268 PF07244 Surface antigen variable number repeat ACIS_00269 PF02163 Peptidase family M50 ACIS_00269 PF17820 PDZ domain ACIS_00272 PF00768 D-alanyl-D-alanine carboxypeptidase ACIS_00272 PF07943 Penicillin-binding protein 5, C-terminal domain ACIS_00273 PF02569 Pantoate-beta-alanine ligase ACIS_00274 PF00132 Bacterial transferase hexapeptide (six repeats) ACIS_00275 PF02817 e3 binding domain ACIS_00275 PF00364 Biotin-requiring enzyme ACIS_00275 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ACIS_00276 PF00557 Metallopeptidase family M24 ACIS_00279 PF17827 PrmC N-terminal domain ACIS_00279 PF05175 Methyltransferase small domain ACIS_00280 PF00462 Glutaredoxin ACIS_00281 PF01687 Riboflavin kinase ACIS_00281 PF06574 FAD synthetase ACIS_00282 PF01252 Signal peptidase (SPase) II ACIS_00283 PF05193 Peptidase M16 inactive domain ACIS_00283 PF00675 Insulinase (Peptidase family M16) ACIS_00290 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 ACIS_00291 PF00035 Double-stranded RNA binding motif ACIS_00291 PF14622 Ribonuclease-III-like ACIS_00293 PF17820 PDZ domain ACIS_00293 PF13180 PDZ domain ACIS_00294 PF01145 SPFH domain / Band 7 family ACIS_00296 PF12221 Bacterial membrane protein N terminal ACIS_00296 PF01145 SPFH domain / Band 7 family ACIS_00318 PF02222 ATP-grasp domain ACIS_00318 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain ACIS_00319 PF04379 ApaG domain ACIS_00321 PF00330 Aconitase family (aconitate hydratase) ACIS_00321 PF00694 Aconitase C-terminal domain ACIS_00322 PF02686 Glu-tRNAGln amidotransferase C subunit ACIS_00323 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ACIS_00323 PF14572 Phosphoribosyl synthetase-associated domain ACIS_00324 PF10609 NUBPL iron-transfer P-loop NTPase ACIS_00326 PF10691 Protein of unknown function (DUF2497) ACIS_00327 PF02321 Outer membrane efflux protein ACIS_00328 PF00572 Ribosomal protein L13 ACIS_00329 PF00380 Ribosomal protein S9/S16 ACIS_00330 PF00719 Inorganic pyrophosphatase ACIS_00333 PF00072 Response regulator receiver domain ACIS_00333 PF00486 Transcriptional regulatory protein, C terminal ACIS_00336 PF00712 DNA polymerase III beta subunit, N-terminal domain ACIS_00336 PF02767 DNA polymerase III beta subunit, central domain ACIS_00336 PF02768 DNA polymerase III beta subunit, C-terminal domain ACIS_00337 PF01380 SIS domain ACIS_00338 PF02699 Preprotein translocase subunit ACIS_00340 PF02844 Phosphoribosylglycinamide synthetase, N domain ACIS_00340 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ACIS_00340 PF02843 Phosphoribosylglycinamide synthetase, C domain ACIS_00341 PF13525 Outer membrane lipoprotein ACIS_00343 PF01040 UbiA prenyltransferase family ACIS_00344 PF00115 Cytochrome C and Quinol oxidase polypeptide I ACIS_00345 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ACIS_00345 PF02790 Cytochrome C oxidase subunit II, transmembrane domain ACIS_00346 PF13840 ACT domain ACIS_00346 PF00696 Amino acid kinase family ACIS_00347 PF09334 tRNA synthetases class I (M) ACIS_00347 PF08264 Anticodon-binding domain of tRNA ACIS_00348 PF01209 ubiE/COQ5 methyltransferase family ACIS_00350 PF00004 ATPase family associated with various cellular activities (AAA) ACIS_00350 PF07724 AAA domain (Cdc48 subfamily) ACIS_00350 PF10431 C-terminal, D2-small domain, of ClpB protein ACIS_00351 PF00227 Proteasome subunit ACIS_00352 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACIS_00352 PF07498 Rho termination factor, N-terminal domain ACIS_00352 PF07497 Rho termination factor, RNA-binding domain ACIS_00355 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ACIS_00355 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ACIS_00356 PF02899 Phage integrase, N-terminal SAM-like domain ACIS_00356 PF00589 Phage integrase family ACIS_00357 PF02769 AIR synthase related protein, C-terminal domain ACIS_00357 PF00586 AIR synthase related protein, N-terminal domain ACIS_00365 PF00809 Pterin binding enzyme ACIS_00365 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ACIS_00367 PF00586 AIR synthase related protein, N-terminal domain ACIS_00367 PF02769 AIR synthase related protein, C-terminal domain ACIS_00367 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ACIS_00369 PF04055 Radical SAM superfamily ACIS_00369 PF06968 Biotin and Thiamin Synthesis associated domain ACIS_00373 PF01476 LysM domain ACIS_00373 PF01551 Peptidase family M23 ACIS_00374 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded ACIS_00376 PF13932 GidA associated domain ACIS_00376 PF01134 Glucose inhibited division protein A ACIS_00384 PF00551 Formyl transferase ACIS_00385 PF00883 Cytosol aminopeptidase family, catalytic domain ACIS_00385 PF02789 Cytosol aminopeptidase family, N-terminal domain ACIS_00386 PF00775 Dioxygenase ACIS_00390 PF00004 ATPase family associated with various cellular activities (AAA) ACIS_00390 PF07724 AAA domain (Cdc48 subfamily) ACIS_00390 PF17871 AAA lid domain ACIS_00390 PF02861 Clp amino terminal domain, pathogenicity island component ACIS_00390 PF10431 C-terminal, D2-small domain, of ClpB protein ACIS_00394 PF00118 TCP-1/cpn60 chaperonin family ACIS_00395 PF00166 Chaperonin 10 Kd subunit ACIS_00396 PF04002 RadC-like JAB domain ACIS_00397 PF03099 Biotin/lipoate A/B protein ligase family ACIS_00398 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ACIS_00398 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ACIS_00398 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ACIS_00398 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ACIS_00399 PF01979 Amidohydrolase family ACIS_00401 PF04127 DNA / pantothenate metabolism flavoprotein ACIS_00401 PF02441 Flavoprotein ACIS_00402 PF10415 Fumarase C C-terminus ACIS_00402 PF00206 Lyase ACIS_00404 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ACIS_00404 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ACIS_00404 PF02142 MGS-like domain ACIS_00406 PF00809 Pterin binding enzyme ACIS_00408 PF00005 ABC transporter ACIS_00408 PF00664 ABC transporter transmembrane region ACIS_00411 PF00107 Zinc-binding dehydrogenase ACIS_00412 PF13361 UvrD-like helicase C-terminal domain ACIS_00412 PF00580 UvrD/REP helicase N-terminal domain ACIS_00412 PF12705 PD-(D/E)XK nuclease superfamily ACIS_00417 PF03969 AFG1-like ATPase ACIS_00418 PF00762 Ferrochelatase ACIS_00422 PF00216 Bacterial DNA-binding protein ACIS_00423 PF01343 Peptidase family S49 ACIS_00424 PF00575 S1 RNA binding domain ACIS_00425 PF02224 Cytidylate kinase ACIS_00426 PF00588 SpoU rRNA Methylase family ACIS_00426 PF08032 RNA 2'-O ribose methyltransferase substrate binding ACIS_00427 PF00009 Elongation factor Tu GTP binding domain ACIS_00427 PF03143 Elongation factor Tu C-terminal domain ACIS_00427 PF03144 Elongation factor Tu domain 2 ACIS_00428 PF00338 Ribosomal protein S10p/S20e ACIS_00430 PF00297 Ribosomal protein L3 ACIS_00431 PF00573 Ribosomal protein L4/L1 family ACIS_00432 PF00276 Ribosomal protein L23 ACIS_00433 PF03947 Ribosomal Proteins L2, C-terminal domain ACIS_00433 PF00181 Ribosomal Proteins L2, RNA binding domain ACIS_00434 PF00203 Ribosomal protein S19 ACIS_00435 PF00237 Ribosomal protein L22p/L17e ACIS_00436 PF00189 Ribosomal protein S3, C-terminal domain ACIS_00436 PF07650 KH domain ACIS_00437 PF00252 Ribosomal protein L16p/L10e ACIS_00438 PF00831 Ribosomal L29 protein ACIS_00439 PF00366 Ribosomal protein S17 ACIS_00440 PF00238 Ribosomal protein L14p/L23e ACIS_00441 PF00467 KOW motif ACIS_00441 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ACIS_00442 PF00281 Ribosomal protein L5 ACIS_00442 PF00673 ribosomal L5P family C-terminus ACIS_00443 PF00253 Ribosomal protein S14p/S29e ACIS_00444 PF00410 Ribosomal protein S8 ACIS_00445 PF00347 Ribosomal protein L6 ACIS_00446 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ACIS_00447 PF03719 Ribosomal protein S5, C-terminal domain ACIS_00447 PF00333 Ribosomal protein S5, N-terminal domain ACIS_00448 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ACIS_00449 PF00344 SecY translocase ACIS_00450 PF05191 Adenylate kinase, active site lid ACIS_00451 PF00416 Ribosomal protein S13/S18 ACIS_00452 PF00411 Ribosomal protein S11 ACIS_00454 PF01000 RNA polymerase Rpb3/RpoA insert domain ACIS_00454 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ACIS_00454 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ACIS_00455 PF01196 Ribosomal protein L17 ACIS_00456 PF03483 B3/4 domain ACIS_00456 PF03484 tRNA synthetase B5 domain ACIS_00456 PF01588 Putative tRNA binding domain ACIS_00456 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ACIS_00456 PF03147 Ferredoxin-fold anticodon binding domain ACIS_00460 PF00825 Ribonuclease P ACIS_00461 PF00468 Ribosomal protein L34 ACIS_00466 PF01040 UbiA prenyltransferase family ACIS_00467 PF01613 Flavin reductase like domain ACIS_00468 PF01113 Dihydrodipicolinate reductase, N-terminus ACIS_00468 PF05173 Dihydrodipicolinate reductase, C-terminus ACIS_00469 PF00005 ABC transporter ACIS_00471 PF01702 Queuine tRNA-ribosyltransferase ACIS_00472 PF01783 Ribosomal L32p protein family ACIS_00473 PF02504 Fatty acid synthesis protein ACIS_00474 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ACIS_00474 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACIS_00475 PF14437 MafB19-like deaminase ACIS_00478 PF00772 DnaB-like helicase N terminal domain ACIS_00478 PF03796 DnaB-like helicase C terminal domain ACIS_00479 PF01266 FAD dependent oxidoreductase ACIS_00481 PF00348 Polyprenyl synthetase ACIS_00482 PF00317 Ribonucleotide reductase, all-alpha domain ACIS_00482 PF02867 Ribonucleotide reductase, barrel domain ACIS_00482 PF03477 ATP cone domain ACIS_00483 PF03652 Holliday junction resolvase ACIS_00484 PF01926 50S ribosome-binding GTPase ACIS_00484 PF01018 GTP1/OBG ACIS_00485 PF00709 Adenylosuccinate synthetase ACIS_00486 PF00691 OmpA family ACIS_00488 PF00456 Transketolase, thiamine diphosphate binding domain ACIS_00488 PF02780 Transketolase, C-terminal domain ACIS_00488 PF02779 Transketolase, pyrimidine binding domain ACIS_00492 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter ACIS_00494 PF12111 Polyribonucleotide phosphorylase C terminal ACIS_00494 PF00575 S1 RNA binding domain ACIS_00494 PF10150 Ribonuclease E/G family ACIS_00495 PF00012 Hsp70 protein ACIS_00499 PF02881 SRP54-type protein, helical bundle domain ACIS_00499 PF00448 SRP54-type protein, GTPase domain ACIS_00499 PF02978 Signal peptide binding domain ACIS_00500 PF01926 50S ribosome-binding GTPase ACIS_00500 PF07650 KH domain ACIS_00507 PF17764 3′ DNA-binding domain (3′BD) ACIS_00507 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ACIS_00507 PF00271 Helicase conserved C-terminal domain ACIS_00507 PF00270 DEAD/DEAH box helicase ACIS_00507 PF18074 Primosomal protein N C-terminal domain ACIS_00508 PF00830 Ribosomal L28 family ACIS_00509 PF00849 RNA pseudouridylate synthase ACIS_00511 PF02785 Biotin carboxylase C-terminal domain ACIS_00511 PF00364 Biotin-requiring enzyme ACIS_00511 PF00289 Biotin carboxylase, N-terminal domain ACIS_00511 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ACIS_00515 PF04055 Radical SAM superfamily ACIS_00518 PF00528 Binding-protein-dependent transport system inner membrane component ACIS_00520 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ACIS_00520 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ACIS_00522 PF03135 CagE, TrbE, VirB family, component of type IV transporter system ACIS_00524 PF04610 TrbL/VirB6 plasmid conjugal transfer protein ACIS_00526 PF04610 TrbL/VirB6 plasmid conjugal transfer protein ACIS_00533 PF01225 Mur ligase family, catalytic domain ACIS_00533 PF02875 Mur ligase family, glutamate ligase domain ACIS_00533 PF08245 Mur ligase middle domain ACIS_00534 PF00692 dUTPase ACIS_00535 PF02401 LytB protein ACIS_00537 PF00117 Glutamine amidotransferase class-I ACIS_00537 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ACIS_00539 PF01676 Metalloenzyme superfamily ACIS_00539 PF06415 BPG-independent PGAM N-terminus (iPGM_N) ACIS_00540 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ACIS_00540 PF01926 50S ribosome-binding GTPase ACIS_00543 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ACIS_00543 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACIS_00545 PF01176 Translation initiation factor 1A / IF-1 ACIS_00546 PF02545 Maf-like protein ACIS_00547 PF00318 Ribosomal protein S2 ACIS_00548 PF00889 Elongation factor TS ACIS_00550 PF00950 ABC 3 transport family ACIS_00553 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal ACIS_00553 PF00355 Rieske [2Fe-2S] domain ACIS_00554 PF00032 Cytochrome b(C-terminal)/b6/petD ACIS_00554 PF00033 Cytochrome b/b6/petB ACIS_00555 PF02167 Cytochrome C1 family ACIS_00560 PF00749 tRNA synthetases class I (E and Q), catalytic domain ACIS_00562 PF01039 Carboxyl transferase domain ACIS_00563 PF00472 RF-1 domain ACIS_00563 PF03462 PCRF domain ACIS_00565 PF01926 50S ribosome-binding GTPase ACIS_00566 PF00696 Amino acid kinase family ACIS_00567 PF01218 Coproporphyrinogen III oxidase ACIS_00569 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ACIS_00569 PF02403 Seryl-tRNA synthetase N-terminal domain ACIS_00570 PF02646 RmuC family ACIS_00577 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ACIS_00577 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ACIS_00577 PF10531 SLBB domain ACIS_00578 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ACIS_00579 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ACIS_00580 PF00361 Proton-conducting membrane transporter ACIS_00580 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ACIS_00582 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus ACIS_00582 PF00361 Proton-conducting membrane transporter ACIS_00583 PF00361 Proton-conducting membrane transporter ACIS_00584 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ACIS_00584 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ACIS_00584 PF13288 DXP reductoisomerase C-terminal domain ACIS_00588 PF04551 GcpE protein ACIS_00589 PF00902 Sec-independent protein translocase protein (TatC) ACIS_00590 PF00873 AcrB/AcrD/AcrF family ACIS_00592 PF13184 NusA-like KH domain ACIS_00592 PF08529 NusA N-terminal domain ACIS_00592 PF00575 S1 RNA binding domain ACIS_00594 PF11987 Translation-initiation factor 2 ACIS_00594 PF00009 Elongation factor Tu GTP binding domain ACIS_00595 PF02033 Ribosome-binding factor A ACIS_00597 PF03741 Integral membrane protein TerC family ACIS_00599 PF17871 AAA lid domain ACIS_00599 PF10431 C-terminal, D2-small domain, of ClpB protein ACIS_00599 PF02861 Clp amino terminal domain, pathogenicity island component ACIS_00599 PF00004 ATPase family associated with various cellular activities (AAA) ACIS_00599 PF07724 AAA domain (Cdc48 subfamily) ACIS_00613 PF01521 Iron-sulphur cluster biosynthesis ACIS_00614 PF10502 Signal peptidase, peptidase S26 ACIS_00615 PF12838 4Fe-4S dicluster domain ACIS_00619 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ACIS_00619 PF01565 FAD binding domain ACIS_00620 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ACIS_00620 PF03900 Porphobilinogen deaminase, C-terminal domain ACIS_00621 PF02875 Mur ligase family, glutamate ligase domain ACIS_00621 PF08245 Mur ligase middle domain ACIS_00622 PF01425 Amidase ACIS_00624 PF01709 Transcriptional regulator ACIS_00625 PF00472 RF-1 domain ACIS_00625 PF03462 PCRF domain ACIS_00628 PF04452 RNA methyltransferase ACIS_00629 PF00578 AhpC/TSA family ACIS_00630 PF00133 tRNA synthetases class I (I, L, M and V) ACIS_00630 PF08264 Anticodon-binding domain of tRNA ACIS_00635 PF11967 Recombination protein O N terminal ACIS_00635 PF02565 Recombination protein O C terminal ACIS_00636 PF00750 tRNA synthetases class I (R) ACIS_00636 PF05746 DALR anticodon binding domain ACIS_00636 PF03485 Arginyl tRNA synthetase N terminal domain ACIS_00639 PF02874 ATP synthase alpha/beta family, beta-barrel domain ACIS_00639 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACIS_00640 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ACIS_00641 PF00923 Transaldolase/Fructose-6-phosphate aldolase ACIS_00644 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ACIS_00644 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ACIS_00645 PF01416 tRNA pseudouridine synthase ACIS_00647 PF01921 tRNA synthetases class I (K) ACIS_00649 PF02129 X-Pro dipeptidyl-peptidase (S15 family) ACIS_00651 PF00266 Aminotransferase class-V ACIS_00652 PF01592 NifU-like N terminal domain ACIS_00653 PF01521 Iron-sulphur cluster biosynthesis ACIS_00654 PF07743 HSCB C-terminal oligomerisation domain ACIS_00654 PF00226 DnaJ domain ACIS_00655 PF00012 Hsp70 protein ACIS_00656 PF00111 2Fe-2S iron-sulfur cluster binding domain ACIS_00658 PF03918 Cytochrome C biogenesis protein ACIS_00660 PF02441 Flavoprotein ACIS_00662 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIS_00662 PF01751 Toprim domain ACIS_00662 PF00204 DNA gyrase B ACIS_00662 PF00986 DNA gyrase B subunit, carboxyl terminus ACIS_00664 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal ACIS_00664 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ACIS_00664 PF00384 Molybdopterin oxidoreductase ACIS_00665 PF00146 NADH dehydrogenase ACIS_00671 PF00140 Sigma-70 factor, region 1.2 ACIS_00671 PF04542 Sigma-70 region 2 ACIS_00671 PF04545 Sigma-70, region 4 ACIS_00676 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ACIS_00676 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ACIS_00676 PF06827 Zinc finger found in FPG and IleRS ACIS_00681 PF01728 FtsJ-like methyltransferase ACIS_00689 PF13335 Magnesium chelatase, subunit ChlI C-terminal ACIS_00689 PF01078 Magnesium chelatase, subunit ChlI ACIS_00690 PF00929 Exonuclease ACIS_00692 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ACIS_00694 PF00231 ATP synthase ACIS_00695 PF01227 GTP cyclohydrolase I ACIS_00696 PF01523 Putative modulator of DNA gyrase ACIS_00697 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACIS_00710 PF01812 5-formyltetrahydrofolate cyclo-ligase family ACIS_00712 PF01795 MraW methylase family ACIS_00714 PF01926 50S ribosome-binding GTPase ACIS_00714 PF01018 GTP1/OBG ACIS_00715 PF00113 Enolase, C-terminal TIM barrel domain ACIS_00715 PF03952 Enolase, N-terminal domain ACIS_00716 PF00829 Ribosomal prokaryotic L21 protein ACIS_00718 PF01016 Ribosomal L27 protein ACIS_00721 PF00444 Ribosomal protein L36 ACIS_00724 PF03372 Endonuclease/Exonuclease/phosphatase family ACIS_00725 PF03330 Lytic transglycolase ACIS_00730 PF14850 DNA-binding domain of Proline dehydrogenase ACIS_00730 PF01619 Proline dehydrogenase ACIS_00730 PF00171 Aldehyde dehydrogenase family ACIS_00730 PF18327 Proline utilization A proline dehydrogenase N-terminal domain ACIS_00739 PF00814 Glycoprotease family ACIS_00740 PF08241 Methyltransferase domain ACIS_00742 PF02502 Ribose/Galactose Isomerase ACIS_00745 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ACIS_00745 PF00056 lactate/malate dehydrogenase, NAD binding domain ACIS_00748 PF00814 Glycoprotease family ACIS_00749 PF16868 NMT1-like family ACIS_00750 PF00121 Triosephosphate isomerase ACIS_00751 PF00398 Ribosomal RNA adenine dimethylase ACIS_00753 PF00202 Aminotransferase class-III ACIS_00756 PF00586 AIR synthase related protein, N-terminal domain ACIS_00756 PF02769 AIR synthase related protein, C-terminal domain ACIS_00776 PF06421 GTP-binding protein LepA C-terminus ACIS_00776 PF00679 Elongation factor G C-terminus ACIS_00776 PF00009 Elongation factor Tu GTP binding domain ACIS_00776 PF03144 Elongation factor Tu domain 2 ACIS_00779 PF03725 3' exoribonuclease family, domain 2 ACIS_00779 PF01138 3' exoribonuclease family, domain 1 ACIS_00779 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ACIS_00779 PF00013 KH domain ACIS_00779 PF00575 S1 RNA binding domain ACIS_00780 PF00312 Ribosomal protein S15 ACIS_00781 PF01509 TruB family pseudouridylate synthase (N terminal domain) ACIS_00781 PF16198 tRNA pseudouridylate synthase B C-terminal domain ACIS_00790 PF13145 PPIC-type PPIASE domain ACIS_00793 PF10417 C-terminal domain of 1-Cys peroxiredoxin ACIS_00793 PF00578 AhpC/TSA family ACIS_00794 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACIS_00795 PF01467 Cytidylyltransferase-like ACIS_00798 PF03129 Anticodon binding domain ACIS_00798 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ACIS_00799 PF01648 4'-phosphopantetheinyl transferase superfamily ACIS_00802 PF13368 Topoisomerase C-terminal repeat ACIS_00802 PF01396 Topoisomerase DNA binding C4 zinc finger ACIS_00802 PF01131 DNA topoisomerase ACIS_00802 PF01751 Toprim domain ACIS_00803 PF01256 Carbohydrate kinase ACIS_00803 PF03853 YjeF-related protein N-terminus ACIS_00807 PF00512 His Kinase A (phospho-acceptor) domain ACIS_00807 PF13188 PAS domain ACIS_00807 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIS_00807 PF08448 PAS fold ACIS_00807 PF00072 Response regulator receiver domain ACIS_00811 PF00288 GHMP kinases N terminal domain ACIS_00811 PF08544 GHMP kinases C terminal ACIS_00813 PF01207 Dihydrouridine synthase (Dus) ACIS_00814 PF00140 Sigma-70 factor, region 1.2 ACIS_00814 PF03979 Sigma-70 factor, region 1.1 ACIS_00814 PF04542 Sigma-70 region 2 ACIS_00814 PF04539 Sigma-70 region 3 ACIS_00814 PF04545 Sigma-70, region 4 ACIS_00814 PF04546 Sigma-70, non-essential region ACIS_00815 PF13662 Toprim domain ACIS_00815 PF08275 DNA primase catalytic core, N-terminal domain ACIS_00815 PF01807 CHC2 zinc finger ACIS_00820 PF00268 Ribonucleotide reductase, small chain ACIS_00821 PF09190 DALR domain ACIS_00821 PF01406 tRNA synthetases class I (C) catalytic domain ACIS_00822 PF06055 Exopolysaccharide synthesis, ExoD ACIS_00825 PF05088 Bacterial NAD-glutamate dehydrogenase ACIS_00827 PF00990 Diguanylate cyclase, GGDEF domain ACIS_00827 PF00072 Response regulator receiver domain ACIS_00828 PF01479 S4 domain ACIS_00828 PF00849 RNA pseudouridylate synthase ACIS_00830 PF08207 Elongation factor P (EF-P) KOW-like domain ACIS_00830 PF01132 Elongation factor P (EF-P) OB domain ACIS_00830 PF09285 Elongation factor P, C-terminal ACIS_00831 PF04101 Glycosyltransferase family 28 C-terminal domain ACIS_00831 PF03033 Glycosyltransferase family 28 N-terminal domain ACIS_00837 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACIS_00839 PF02666 Phosphatidylserine decarboxylase ACIS_00840 PF01066 CDP-alcohol phosphatidyltransferase ACIS_00841 PF14849 YidC periplasmic domain ACIS_00841 PF02096 60Kd inner membrane protein ACIS_00842 PF00885 6,7-dimethyl-8-ribityllumazine synthase ACIS_00843 PF01029 NusB family ACIS_00844 PF17760 UvrA interaction domain ACIS_00844 PF17755 UvrA DNA-binding domain ACIS_00846 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ACIS_00847 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ACIS_00848 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ACIS_00849 PF01975 Survival protein SurE ACIS_00850 PF03100 CcmE ACIS_00851 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ACIS_00852 PF01026 TatD related DNase ACIS_00854 PF13603 Leucyl-tRNA synthetase, Domain 2 ACIS_00854 PF08264 Anticodon-binding domain of tRNA ACIS_00854 PF00133 tRNA synthetases class I (I, L, M and V) ACIS_00854 PF09334 tRNA synthetases class I (M) ACIS_00858 PF01192 RNA polymerase Rpb6 ACIS_00860 PF13667 ThiC-associated domain ACIS_00860 PF01964 Radical SAM ThiC family ACIS_00861 PF01121 Dephospho-CoA kinase ACIS_00862 PF01300 Telomere recombination ACIS_00862 PF03481 Putative GTP-binding controlling metal-binding ACIS_00863 PF12169 DNA polymerase III subunits gamma and tau domain III ACIS_00863 PF12170 DNA polymerase III tau subunit V interacting with alpha ACIS_00863 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding ACIS_00866 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ ACIS_00867 PF01467 Cytidylyltransferase-like ACIS_00869 PF08299 Bacterial dnaA protein helix-turn-helix ACIS_00869 PF00308 Bacterial dnaA protein ACIS_00869 PF11638 DnaA N-terminal domain ACIS_00871 PF02934 GatB/GatE catalytic domain ACIS_00871 PF02637 GatB domain ACIS_00873 PF00436 Single-strand binding protein family ACIS_00875 PF07690 Major Facilitator Superfamily ACIS_00875 PF00083 Sugar (and other) transporter ACIS_00877 PF07690 Major Facilitator Superfamily ACIS_00877 PF00083 Sugar (and other) transporter ACIS_00879 PF03717 Penicillin-binding Protein dimerisation domain ACIS_00879 PF00905 Penicillin binding protein transpeptidase domain ACIS_00880 PF00490 Delta-aminolevulinic acid dehydratase ACIS_00881 PF00795 Carbon-nitrogen hydrolase ACIS_00881 PF02540 NAD synthase ACIS_00883 PF07690 Major Facilitator Superfamily ACIS_00883 PF00083 Sugar (and other) transporter ACIS_00884 PF07690 Major Facilitator Superfamily ACIS_00887 PF05190 MutS family domain IV ACIS_00887 PF00488 MutS domain V ACIS_00887 PF05192 MutS domain III ACIS_00887 PF05188 MutS domain II ACIS_00887 PF01624 MutS domain I ACIS_00890 PF01230 HIT domain ACIS_00892 PF00701 Dihydrodipicolinate synthetase family ACIS_00895 PF16870 2-oxoglutarate dehydrogenase C-terminal ACIS_00895 PF02779 Transketolase, pyrimidine binding domain ACIS_00895 PF00676 Dehydrogenase E1 component ACIS_00895 PF16078 2-oxoglutarate dehydrogenase N-terminus ACIS_00900 PF00919 Uncharacterized protein family UPF0004 ACIS_00900 PF04055 Radical SAM superfamily ACIS_00902 PF03109 ABC1 family ACIS_00904 PF00005 ABC transporter ACIS_00905 PF01297 Zinc-uptake complex component A periplasmic ACIS_00907 PF02132 RecR protein ACIS_00907 PF13662 Toprim domain ACIS_00908 PF00005 ABC transporter ACIS_00908 PF12857 TOBE-like domain ACIS_00911 PF02237 Biotin protein ligase C terminal domain ACIS_00911 PF03099 Biotin/lipoate A/B protein ligase family ACIS_00916 PF08459 UvrC Helix-hairpin-helix N-terminal ACIS_00916 PF01541 GIY-YIG catalytic domain ACIS_00916 PF02151 UvrB/uvrC motif ACIS_00917 PF00206 Lyase ACIS_00917 PF10397 Adenylosuccinate lyase C-terminus ACIS_00918 PF13662 Toprim domain ACIS_00918 PF02132 RecR protein ACIS_00921 PF01541 GIY-YIG catalytic domain ACIS_00921 PF02151 UvrB/uvrC motif ACIS_00921 PF08459 UvrC Helix-hairpin-helix N-terminal ACIS_00922 PF00183 Hsp90 protein ACIS_00922 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIS_00924 PF10576 Iron-sulfur binding domain of endonuclease III ACIS_00924 PF00633 Helix-hairpin-helix motif ACIS_00924 PF00730 HhH-GPD superfamily base excision DNA repair protein ACIS_00926 PF00521 DNA gyrase/topoisomerase IV, subunit A ACIS_00926 PF03989 DNA gyrase C-terminal domain, beta-propeller ACIS_00935 PF00580 UvrD/REP helicase N-terminal domain ACIS_00935 PF13361 UvrD-like helicase C-terminal domain ACIS_00956 PF00471 Ribosomal protein L33 ACIS_00958 PF00550 Phosphopantetheine attachment site ACIS_00959 PF00109 Beta-ketoacyl synthase, N-terminal domain ACIS_00959 PF02801 Beta-ketoacyl synthase, C-terminal domain ACIS_00963 PF02481 DNA recombination-mediator protein A ACIS_00966 PF01119 DNA mismatch repair protein, C-terminal domain ACIS_00966 PF08676 MutL C terminal dimerisation domain ACIS_00969 PF01618 MotA/TolQ/ExbB proton channel family ACIS_00970 PF02472 Biopolymer transport protein ExbD/TolR ACIS_00973 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIS_00973 PF00512 His Kinase A (phospho-acceptor) domain ACIS_00973 PF00989 PAS fold ACIS_00974 PF00202 Aminotransferase class-III ACIS_00980 PF09397 Ftsk gamma domain ACIS_00980 PF13491 4TM region of DNA translocase FtsK/SpoIIIE ACIS_00980 PF17854 FtsK alpha domain ACIS_00980 PF01580 FtsK/SpoIIIE family ACIS_00984 PF00571 CBS domain ACIS_00984 PF03471 Transporter associated domain ACIS_00984 PF01595 Cyclin M transmembrane N-terminal domain ACIS_00985 PF02581 Thiamine monophosphate synthase ACIS_00986 PF03618 Kinase/pyrophosphorylase ACIS_00988 PF02911 Formyl transferase, C-terminal domain ACIS_00988 PF00551 Formyl transferase ACIS_00989 PF02190 ATP-dependent protease La (LON) substrate-binding domain ACIS_00989 PF05362 Lon protease (S16) C-terminal proteolytic domain ACIS_00989 PF00004 ATPase family associated with various cellular activities (AAA) ACIS_00990 PF06689 ClpX C4-type zinc finger ACIS_00990 PF10431 C-terminal, D2-small domain, of ClpB protein ACIS_00990 PF07724 AAA domain (Cdc48 subfamily) ACIS_00991 PF00574 Clp protease ACIS_00992 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ACIS_00992 PF05698 Bacterial trigger factor protein (TF) C-terminus ACIS_00992 PF05697 Bacterial trigger factor protein (TF) ACIS_00997 PF01479 S4 domain ACIS_00997 PF00163 Ribosomal protein S4/S9 N-terminal domain ACIS_00999 PF01594 AI-2E family transporter ACIS_01001 PF08543 Phosphomethylpyrimidine kinase ACIS_01004 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ACIS_01005 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ACIS_01006 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ACIS_01007 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ACIS_01007 PF14579 Helix-hairpin-helix motif ACIS_01007 PF07733 Bacterial DNA polymerase III alpha NTPase domain ACIS_01007 PF02811 PHP domain ACIS_01011 PF01053 Cys/Met metabolism PLP-dependent enzyme ACIS_01012 PF02875 Mur ligase family, glutamate ligase domain ACIS_01012 PF08245 Mur ligase middle domain ACIS_01013 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ACIS_01013 PF01243 Pyridoxamine 5'-phosphate oxidase ACIS_01016 PF02230 Phospholipase/Carboxylesterase ACIS_01017 PF01327 Polypeptide deformylase ACIS_01019 PF01180 Dihydroorotate dehydrogenase ACIS_01021 PF03309 Type III pantothenate kinase ACIS_01024 PF00155 Aminotransferase class I and II ACIS_01029 PF01351 Ribonuclease HII ACIS_01030 PF04998 RNA polymerase Rpb1, domain 5 ACIS_01030 PF05000 RNA polymerase Rpb1, domain 4 ACIS_01030 PF04983 RNA polymerase Rpb1, domain 3 ACIS_01030 PF04997 RNA polymerase Rpb1, domain 1 ACIS_01030 PF00623 RNA polymerase Rpb1, domain 2 ACIS_01032 PF04563 RNA polymerase beta subunit ACIS_01032 PF04561 RNA polymerase Rpb2, domain 2 ACIS_01032 PF04565 RNA polymerase Rpb2, domain 3 ACIS_01032 PF10385 RNA polymerase beta subunit external 1 domain ACIS_01032 PF00562 RNA polymerase Rpb2, domain 6 ACIS_01032 PF04560 RNA polymerase Rpb2, domain 7 ACIS_01033 PF00542 Ribosomal protein L7/L12 C-terminal domain ACIS_01034 PF00466 Ribosomal protein L10 ACIS_01035 PF00687 Ribosomal protein L1p/L10e family ACIS_01036 PF03946 Ribosomal protein L11, N-terminal domain ACIS_01036 PF00298 Ribosomal protein L11, RNA binding domain ACIS_01038 PF02357 Transcription termination factor nusG ACIS_01038 PF00467 KOW motif ACIS_01040 PF00009 Elongation factor Tu GTP binding domain ACIS_01040 PF03144 Elongation factor Tu domain 2 ACIS_01040 PF03143 Elongation factor Tu C-terminal domain ACIS_01042 PF00679 Elongation factor G C-terminus ACIS_01042 PF14492 Elongation Factor G, domain II ACIS_01042 PF03764 Elongation factor G, domain IV ACIS_01042 PF00009 Elongation factor Tu GTP binding domain ACIS_01042 PF03144 Elongation factor Tu domain 2 ACIS_01044 PF00177 Ribosomal protein S7p/S5e ACIS_01045 PF00164 Ribosomal protein S12/S23 ACIS_01048 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain ACIS_01048 PF17770 Ribonuclease J C-terminal domain ACIS_01048 PF12706 Beta-lactamase superfamily domain ACIS_01049 PF07676 WD40-like Beta Propeller Repeat ACIS_01049 PF04052 TolB amino-terminal domain ACIS_01050 PF08245 Mur ligase middle domain ACIS_01052 PF00529 HlyD membrane-fusion protein of T1SS ACIS_01052 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACIS_01053 PF00528 Binding-protein-dependent transport system inner membrane component ACIS_01056 PF03060 Nitronate monooxygenase ACIS_01059 PF01165 Ribosomal protein S21 ACIS_01060 PF00549 CoA-ligase ACIS_01060 PF08442 ATP-grasp domain ACIS_01062 PF00549 CoA-ligase ACIS_01062 PF02629 CoA binding domain ACIS_01064 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ACIS_01064 PF01411 tRNA synthetases class II (A) ACIS_01065 PF00528 Binding-protein-dependent transport system inner membrane component ACIS_01074 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ACIS_01074 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACIS_01077 PF00158 Sigma-54 interaction domain ACIS_01077 PF02954 Bacterial regulatory protein, Fis family ACIS_01077 PF00072 Response regulator receiver domain ACIS_01079 PF01820 D-ala D-ala ligase N-terminus ACIS_01079 PF07478 D-ala D-ala ligase C-terminus ACIS_01080 PF02951 Prokaryotic glutathione synthetase, N-terminal domain ACIS_01080 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain ACIS_01081 PF04972 BON domain ACIS_01082 PF01336 OB-fold nucleic acid binding domain ACIS_01082 PF02938 GAD domain ACIS_01082 PF00152 tRNA synthetases class II (D, K and N) ACIS_01083 PF13419 Haloacid dehalogenase-like hydrolase ACIS_01086 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ACIS_01086 PF02896 PEP-utilising enzyme, TIM barrel domain ACIS_01086 PF00391 PEP-utilising enzyme, mobile domain ACIS_01088 PF00361 Proton-conducting membrane transporter ACIS_01090 PF00034 Cytochrome c ACIS_01098 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ACIS_01098 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ACIS_01101 PF00625 Guanylate kinase ACIS_01102 PF01578 Cytochrome C assembly protein ACIS_01103 PF01330 RuvA N terminal domain ACIS_01103 PF07499 RuvA, C-terminal domain ACIS_01104 PF17864 RuvB AAA lid domain ACIS_01104 PF05491 RuvB C-terminal winged helix domain ACIS_01104 PF05496 Holliday junction DNA helicase RuvB P-loop domain ACIS_01105 PF07690 Major Facilitator Superfamily ACIS_01106 PF02511 Thymidylate synthase complementing protein ACIS_01107 PF13085 2Fe-2S iron-sulfur cluster binding domain ACIS_01108 PF00890 FAD binding domain ACIS_01108 PF02910 Fumarate reductase flavoprotein C-term ACIS_01111 PF00464 Serine hydroxymethyltransferase ACIS_01113 PF03948 Ribosomal protein L9, C-terminal domain ACIS_01113 PF01281 Ribosomal protein L9, N-terminal domain ACIS_01114 PF01084 Ribosomal protein S18 ACIS_01115 PF01250 Ribosomal protein S6 ACIS_01119 PF18073 Rubredoxin metal binding domain ACIS_01122 PF00462 Glutaredoxin ACIS_01124 PF03120 NAD-dependent DNA ligase OB-fold domain ACIS_01124 PF12826 Helix-hairpin-helix motif ACIS_01124 PF00533 BRCA1 C Terminus (BRCT) domain ACIS_01124 PF01653 NAD-dependent DNA ligase adenylation domain ACIS_01124 PF03119 NAD-dependent DNA ligase C4 zinc finger domain ACIS_01126 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIS_01126 PF00672 HAMP domain ACIS_01126 PF00512 His Kinase A (phospho-acceptor) domain ACIS_01126 PF00989 PAS fold ACIS_01127 PF00313 'Cold-shock' DNA-binding domain ACIS_01131 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ACIS_01132 PF00005 ABC transporter ACIS_01133 PF02548 Ketopantoate hydroxymethyltransferase ACIS_01134 PF02628 Cytochrome oxidase assembly protein ACIS_01136 PF13393 Histidyl-tRNA synthetase ACIS_01136 PF03129 Anticodon binding domain ACIS_01137 PF01259 SAICAR synthetase ACIS_01143 PF01255 Putative undecaprenyl diphosphate synthase ACIS_01144 PF01765 Ribosome recycling factor ACIS_01145 PF00696 Amino acid kinase family ACIS_01147 PF00075 RNase H ACIS_01148 PF02559 CarD-like/TRCF domain ACIS_01148 PF00270 DEAD/DEAH box helicase ACIS_01148 PF00271 Helicase conserved C-terminal domain ACIS_01148 PF03461 TRCF domain ACIS_01148 PF17757 UvrB interaction domain ACIS_01151 PF00677 Lumazine binding domain ACIS_01153 PF04225 Opacity-associated protein A LysM-like domain ACIS_01153 PF01551 Peptidase family M23 ACIS_01154 PF00675 Insulinase (Peptidase family M16) ACIS_01154 PF05193 Peptidase M16 inactive domain ACIS_01155 PF13462 Thioredoxin ACIS_01156 PF02556 Preprotein translocase subunit SecB ACIS_01159 PF02223 Thymidylate kinase ACIS_01160 PF00698 Acyl transferase domain ACIS_01163 PF01513 ATP-NAD kinase ACIS_01164 PF00478 IMP dehydrogenase / GMP reductase domain ACIS_01164 PF00571 CBS domain ACIS_01167 PF00676 Dehydrogenase E1 component ACIS_01169 PF00085 Thioredoxin ACIS_01170 PF02609 Exonuclease VII small subunit ACIS_01178 PF00226 DnaJ domain ACIS_01178 PF01556 DnaJ C terminal domain ACIS_01178 PF00684 DnaJ central domain ACIS_01184 PF00154 recA bacterial DNA recombination protein ACIS_01185 PF00156 Phosphoribosyl transferase domain ACIS_01186 PF00899 ThiF family ACIS_01187 PF01617 Surface antigen ACIS_01191 PF00156 Phosphoribosyl transferase domain ACIS_01192 PF07687 Peptidase dimerisation domain ACIS_01192 PF01546 Peptidase family M20/M25/M40 ACIS_01194 PF00999 Sodium/hydrogen exchanger family ACIS_01194 PF02254 TrkA-N domain ACIS_01197 PF00364 Biotin-requiring enzyme ACIS_01197 PF02779 Transketolase, pyrimidine binding domain ACIS_01197 PF02780 Transketolase, C-terminal domain ACIS_01199 PF01523 Putative modulator of DNA gyrase ACIS_01200 PF01926 50S ribosome-binding GTPase ACIS_01200 PF06071 Protein of unknown function (DUF933) ACIS_01201 PF02542 YgbB family ACIS_01202 PF02542 YgbB family ACIS_01202 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase