ACIS_00003	SM01001	AIR carboxylase
ACIS_00007	SM00411	bacterial (prokaryotic) histone like domain
ACIS_00008	SM00422	helix_turn_helix, mercury resistance
ACIS_00020	SM00382	ATPases associated with a variety of cellular activities
ACIS_00022	SM00919	Malic enzyme, NAD binding domain
ACIS_00022	SM01274	ACIS_00022
ACIS_00045	SM00357	Cold shock protein domain
ACIS_00045	SM00382	ATPases associated with a variety of cellular activities
ACIS_00045	SM00959	Rho termination factor, N-terminal domain
ACIS_00075	SM00487	DEAD-like helicases superfamily
ACIS_00075	SM00490	helicase superfamily c-terminal domain
ACIS_00088	SM00028	Tetratricopeptide repeats
ACIS_00102	SM01091	Transporter associated domain
ACIS_00106	SM01207	ACIS_00106
ACIS_00108	SM00271	DnaJ molecular chaperone homology domain
ACIS_00119	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
ACIS_00121	SM00382	ATPases associated with a variety of cellular activities
ACIS_00124	SM00859	Semialdehyde dehydrogenase, NAD binding domain
ACIS_00128	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
ACIS_00133	SM00470	ParB-like nuclease domain
ACIS_00137	SM00864	Tubulin/FtsZ family, GTPase domain
ACIS_00137	SM00865	Tubulin/FtsZ family, C-terminal domain
ACIS_00155	SM00487	DEAD-like helicases superfamily
ACIS_00155	SM00490	helicase superfamily c-terminal domain
ACIS_00164	SM00986	Uracil DNA glycosylase superfamily
ACIS_00164	SM00987	UreE urease accessory protein, C-terminal domain 
ACIS_00166	SM00563	Phosphate acyltransferases
ACIS_00186	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
ACIS_00186	SM00475	5'-3' exonuclease
ACIS_00186	SM00482	DNA polymerase A domain
ACIS_00189	SM00382	ATPases associated with a variety of cellular activities
ACIS_00194	SM01230	ACIS_00194
ACIS_00202	SM01133	ACIS_00202
ACIS_00235	SM00530	Helix-turn-helix XRE-family like proteins 
ACIS_00236	SM00562	ACIS_00236
ACIS_00241	SM01329	ACIS_00241
ACIS_00243	SM00382	ATPases associated with a variety of cellular activities
ACIS_00243	SM00962	SRP54-type protein, GTPase domain
ACIS_00243	SM00963	SRP54-type protein, helical bundle domain
ACIS_00249	SM00957	SecA DEAD-like domain
ACIS_00249	SM00958	SecA preprotein cross-linking domain
ACIS_00250	SM00382	ATPases associated with a variety of cellular activities
ACIS_00253	SM00842	Cell division protein FtsA
ACIS_00265	SM00798	AICARFT/IMPCHase bienzyme
ACIS_00265	SM00851	MGS-like domain
ACIS_00267	SM00935	Outer membrane protein (OmpH-like)
ACIS_00269	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ACIS_00272	SM00936	Penicillin-binding protein 5, C-terminal domain 
ACIS_00281	SM00904	Riboflavin kinase
ACIS_00291	SM00358	Double-stranded RNA binding motif
ACIS_00291	SM00535	Ribonuclease III family
ACIS_00293	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ACIS_00294	SM00244	prohibitin homologues
ACIS_00296	SM00244	prohibitin homologues
ACIS_00323	SM01400	ACIS_00323
ACIS_00331	SM00530	Helix-turn-helix XRE-family like proteins 
ACIS_00333	SM00448	cheY-homologous receiver domain
ACIS_00333	SM00862	Transcriptional regulatory protein, C terminal
ACIS_00335	SM00474	3'-5' exonuclease
ACIS_00336	SM00480	DNA polymerase III beta subunit
ACIS_00338	SM01323	ACIS_00338
ACIS_00340	SM01209	ACIS_00340
ACIS_00340	SM01210	ACIS_00340
ACIS_00350	SM00382	ATPases associated with a variety of cellular activities
ACIS_00350	SM01086	C-terminal, D2-small domain, of ClpB protein
ACIS_00352	SM00357	Cold shock protein domain
ACIS_00352	SM00382	ATPases associated with a variety of cellular activities
ACIS_00352	SM00959	Rho termination factor, N-terminal domain
ACIS_00363	SM00028	Tetratricopeptide repeats
ACIS_00369	SM00729	Elongator protein 3, MiaB family, Radical SAM
ACIS_00369	SM00876	Biotin and Thiamin Synthesis associated domain
ACIS_00376	SM01228	ACIS_00376
ACIS_00378	SM01211	ACIS_00378
ACIS_00390	SM00382	ATPases associated with a variety of cellular activities
ACIS_00390	SM01086	C-terminal, D2-small domain, of ClpB protein
ACIS_00395	SM00883	Chaperonin 10 Kd subunit
ACIS_00404	SM00851	MGS-like domain
ACIS_00404	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
ACIS_00408	SM00382	ATPases associated with a variety of cellular activities
ACIS_00411	SM00829	Enoylreductase
ACIS_00414	SM00248	ankyrin repeats
ACIS_00415	SM00244	prohibitin homologues
ACIS_00424	SM00316	Ribosomal protein S1-like RNA-binding domain
ACIS_00426	SM00967	RNA 2'-O ribose methyltransferase substrate binding
ACIS_00428	SM01403	ACIS_00428
ACIS_00433	SM01382	ACIS_00433
ACIS_00433	SM01383	ACIS_00433
ACIS_00436	SM00322	K homology RNA-binding domain
ACIS_00440	SM01374	ACIS_00440
ACIS_00454	SM00662	RNA polymerases D
ACIS_00456	SM00873	B3/4 domain
ACIS_00456	SM00874	tRNA synthetase B5 domain
ACIS_00456	SM00896	Ferredoxin-fold anticodon binding domain
ACIS_00467	SM00903	Flavin reductase like domain
ACIS_00469	SM00382	ATPases associated with a variety of cellular activities
ACIS_00483	SM00732	Likely ribonuclease with RNase H fold.
ACIS_00485	SM00788	Adenylosuccinate synthetase
ACIS_00488	SM00861	Transketolase, pyrimidine binding domain
ACIS_00499	SM00382	ATPases associated with a variety of cellular activities
ACIS_00499	SM00962	SRP54-type protein, GTPase domain
ACIS_00499	SM00963	SRP54-type protein, helical bundle domain
ACIS_00507	SM00487	DEAD-like helicases superfamily
ACIS_00507	SM00490	helicase superfamily c-terminal domain
ACIS_00509	SM00363	S4 RNA-binding domain
ACIS_00511	SM00878	Biotin carboxylase C-terminal domain
ACIS_00515	SM00729	Elongator protein 3, MiaB family, Radical SAM
ACIS_00522	SM00382	ATPases associated with a variety of cellular activities
ACIS_00537	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
ACIS_00541	SM00564	beta-propeller repeat
ACIS_00563	SM00937	ACIS_00563
ACIS_00577	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
ACIS_00592	SM00316	Ribosomal protein S1-like RNA-binding domain
ACIS_00592	SM00322	K homology RNA-binding domain
ACIS_00599	SM00382	ATPases associated with a variety of cellular activities
ACIS_00599	SM01086	C-terminal, D2-small domain, of ClpB protein
ACIS_00600	SM00838	Elongation factor G C-terminus
ACIS_00618	SM00248	ankyrin repeats
ACIS_00625	SM00937	ACIS_00625
ACIS_00636	SM00836	DALR anticodon binding domain
ACIS_00636	SM01016	Arginyl tRNA synthetase N terminal dom
ACIS_00639	SM00382	ATPases associated with a variety of cellular activities
ACIS_00654	SM00271	DnaJ molecular chaperone homology domain
ACIS_00662	SM00387	Histidine kinase-like ATPases
ACIS_00662	SM00433	TopoisomeraseII
ACIS_00664	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
ACIS_00669	SM00248	ankyrin repeats
ACIS_00676	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
ACIS_00676	SM01232	ACIS_00676
ACIS_00685	SM00116	Domain in cystathionine beta-synthase and other proteins.
ACIS_00685	SM00924	MgtE intracellular N domain
ACIS_00689	SM00382	ATPases associated with a variety of cellular activities
ACIS_00690	SM00479	ACIS_00690
ACIS_00715	SM01192	ACIS_00715
ACIS_00715	SM01193	ACIS_00715
ACIS_00728	SM00822	ACIS_00728
ACIS_00746	SM00905	Dihydroneopterin aldolase
ACIS_00751	SM00650	Ribosomal RNA adenine dimethylases
ACIS_00776	SM00838	Elongation factor G C-terminus
ACIS_00779	SM00316	Ribosomal protein S1-like RNA-binding domain
ACIS_00779	SM00322	K homology RNA-binding domain
ACIS_00780	SM01387	ACIS_00780
ACIS_00802	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
ACIS_00802	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
ACIS_00802	SM00493	ACIS_00802
ACIS_00807	SM00387	Histidine kinase-like ATPases
ACIS_00807	SM00388	His Kinase A (phosphoacceptor) domain
ACIS_00807	SM00448	cheY-homologous receiver domain
ACIS_00815	SM00400	zinc finger
ACIS_00815	SM00493	ACIS_00815
ACIS_00821	SM00840	ACIS_00821
ACIS_00827	SM00267	diguanylate cyclase
ACIS_00827	SM00448	cheY-homologous receiver domain
ACIS_00828	SM00363	S4 RNA-binding domain
ACIS_00830	SM00841	Elongation factor P, C-terminal
ACIS_00830	SM01185	ACIS_00830
ACIS_00851	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
ACIS_00864	SM00411	bacterial (prokaryotic) histone like domain
ACIS_00869	SM00382	ATPases associated with a variety of cellular activities
ACIS_00869	SM00760	Bacterial dnaA protein helix-turn-helix domain
ACIS_00871	SM00845	GatB domain
ACIS_00880	SM01004	Delta-aminolevulinic acid dehydratase
ACIS_00887	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
ACIS_00887	SM00534	ATPase domain of DNA mismatch repair MUTS family
ACIS_00892	SM01130	ACIS_00892
ACIS_00895	SM00861	Transketolase, pyrimidine binding domain
ACIS_00900	SM00729	Elongator protein 3, MiaB family, Radical SAM
ACIS_00904	SM00382	ATPases associated with a variety of cellular activities
ACIS_00907	SM00493	ACIS_00907
ACIS_00908	SM00382	ATPases associated with a variety of cellular activities
ACIS_00916	SM00278	Helix-hairpin-helix DNA-binding motif class 1
ACIS_00916	SM00465	GIY-YIG type nucleases (URI domain)
ACIS_00917	SM00998	Adenylosuccinate lyase C-terminus
ACIS_00924	SM00478	endonuclease III
ACIS_00924	SM00525	ACIS_00924
ACIS_00926	SM00434	DNA Topoisomerase IV
ACIS_00959	SM00825	Beta-ketoacyl synthase
ACIS_00966	SM00853	MutL C terminal dimerisation domain
ACIS_00966	SM01340	ACIS_00966
ACIS_00973	SM00387	Histidine kinase-like ATPases
ACIS_00973	SM00388	His Kinase A (phosphoacceptor) domain
ACIS_00980	SM00843	ACIS_00980
ACIS_00984	SM01091	Transporter associated domain
ACIS_00987	SM00450	Rhodanese Homology Domain
ACIS_00989	SM00382	ATPases associated with a variety of cellular activities
ACIS_00989	SM00464	Found in ATP-dependent protease La (LON)
ACIS_00990	SM00382	ATPases associated with a variety of cellular activities
ACIS_00990	SM00994	ClpX C4-type zinc finger
ACIS_00990	SM01086	C-terminal, D2-small domain, of ClpB protein
ACIS_00997	SM00363	S4 RNA-binding domain
ACIS_00997	SM01390	ACIS_00997
ACIS_01007	SM00481	DNA polymerase alpha chain like domain
ACIS_01030	SM00663	RNA polymerase I subunit A N-terminus
ACIS_01036	SM00649	Ribosomal protein L11/L12
ACIS_01038	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
ACIS_01042	SM00838	Elongation factor G C-terminus
ACIS_01042	SM00889	Elongation factor G, domain IV
ACIS_01048	SM00849	Metallo-beta-lactamase superfamily
ACIS_01062	SM00881	CoA binding domain
ACIS_01064	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
ACIS_01066	SM01230	ACIS_01066
ACIS_01067	SM00849	Metallo-beta-lactamase superfamily
ACIS_01077	SM00382	ATPases associated with a variety of cellular activities
ACIS_01077	SM00448	cheY-homologous receiver domain
ACIS_01081	SM00749	bacterial OsmY and nodulation domain
ACIS_01101	SM00072	Guanylate kinase homologues.
ACIS_01104	SM00382	ATPases associated with a variety of cellular activities
ACIS_01109	SM00382	ATPases associated with a variety of cellular activities
ACIS_01110	SM01219	ACIS_01110
ACIS_01119	SM00382	ATPases associated with a variety of cellular activities
ACIS_01124	SM00292	breast cancer carboxy-terminal domain
ACIS_01124	SM00532	Ligase N family
ACIS_01125	SM00474	3'-5' exonuclease
ACIS_01126	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ACIS_01126	SM00387	Histidine kinase-like ATPases
ACIS_01126	SM00388	His Kinase A (phosphoacceptor) domain
ACIS_01127	SM00357	Cold shock protein domain
ACIS_01132	SM00382	ATPases associated with a variety of cellular activities
ACIS_01148	SM00487	DEAD-like helicases superfamily
ACIS_01148	SM00490	helicase superfamily c-terminal domain
ACIS_01148	SM00982	ACIS_01148
ACIS_01148	SM01058	CarD-like/TRCF domain
ACIS_01157	SM00978	ACIS_01157
ACIS_01160	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
ACIS_01164	SM00116	Domain in cystathionine beta-synthase and other proteins.
ACIS_01164	SM01240	ACIS_01164
ACIS_01177	SM00932	Scaffold protein Nfu/NifU N terminal
ACIS_01184	SM00382	ATPases associated with a variety of cellular activities
ACIS_01197	SM00861	Transketolase, pyrimidine binding domain
