locus-tag class description AMF_001 PF00731 AIR carboxylase AMF_005 PF01098 Cell cycle protein AMF_006 PF00216 Bacterial DNA-binding protein AMF_007 PF13411 MerR HTH family regulatory protein AMF_010 PF01225 Mur ligase family, catalytic domain AMF_010 PF02875 Mur ligase family, glutamate ligase domain AMF_010 PF08245 Mur ligase middle domain AMF_011 PF00579 tRNA synthetases class I (W and Y) AMF_012 PF01025 GrpE AMF_013 PF01872 RibD C-terminal domain AMF_013 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMF_015 PF06418 CTP synthase N-terminus AMF_015 PF00117 Glutamine amidotransferase class-I AMF_018 PF00589 Phage integrase family AMF_018 PF02899 Phage integrase, N-terminal SAM-like domain AMF_019 PF00005 ABC transporter AMF_020 PF03949 Malic enzyme, NAD binding domain AMF_020 PF01515 Phosphate acetyl/butaryl transferase AMF_020 PF00390 Malic enzyme, N-terminal domain AMF_022 PF00361 Proton-conducting membrane transporter AMF_028 PF05690 Thiazole biosynthesis protein ThiG AMF_030 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMF_031 PF13145 PPIC-type PPIASE domain AMF_035 PF08946 Osmosensory transporter coiled coil AMF_035 PF00083 Sugar (and other) transporter AMF_037 PF00886 Ribosomal protein S16 AMF_038 PF14602 Hexapeptide repeat of succinyl-transferase AMF_038 PF12804 MobA-like NTP transferase domain AMF_038 PF00132 Bacterial transferase hexapeptide (six repeats) AMF_042 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AMF_042 PF01409 tRNA synthetases class II core domain (F) AMF_043 PF00453 Ribosomal protein L20 AMF_045 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMF_045 PF07498 Rho termination factor, N-terminal domain AMF_045 PF07497 Rho termination factor, RNA-binding domain AMF_053 PF03477 ATP cone domain AMF_056 PF01617 Surface antigen AMF_061 PF00154 recA bacterial DNA recombination protein AMF_062 PF00156 Phosphoribosyl transferase domain AMF_063 PF00899 ThiF family AMF_064 PF01617 Surface antigen AMF_069 PF00085 Thioredoxin AMF_071 PF00676 Dehydrogenase E1 component AMF_073 PF00478 IMP dehydrogenase / GMP reductase domain AMF_073 PF00571 CBS domain AMF_074 PF01513 ATP-NAD kinase AMF_077 PF00698 Acyl transferase domain AMF_078 PF02223 Thymidylate kinase AMF_081 PF02556 Preprotein translocase subunit SecB AMF_083 PF13462 Thioredoxin AMF_084 PF05193 Peptidase M16 inactive domain AMF_084 PF00675 Insulinase (Peptidase family M16) AMF_085 PF04225 Opacity-associated protein A LysM-like domain AMF_085 PF01551 Peptidase family M23 AMF_087 PF00677 Lumazine binding domain AMF_091 PF02559 CarD-like/TRCF domain AMF_091 PF00270 DEAD/DEAH box helicase AMF_091 PF17757 UvrB interaction domain AMF_091 PF00271 Helicase conserved C-terminal domain AMF_091 PF03461 TRCF domain AMF_092 PF00075 RNase H AMF_094 PF00696 Amino acid kinase family AMF_095 PF01765 Ribosome recycling factor AMF_096 PF01255 Putative undecaprenyl diphosphate synthase AMF_100 PF01259 SAICAR synthetase AMF_1002 PF01678 Diaminopimelate epimerase AMF_1005 PF00162 Phosphoglycerate kinase AMF_1006 PF13742 OB-fold nucleic acid binding domain AMF_1006 PF02601 Exonuclease VII, large subunit AMF_1009 PF00132 Bacterial transferase hexapeptide (six repeats) AMF_1009 PF14602 Hexapeptide repeat of succinyl-transferase AMF_1009 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AMF_101 PF13393 Histidyl-tRNA synthetase AMF_101 PF03129 Anticodon binding domain AMF_1010 PF10396 GTP-binding protein TrmE N-terminus AMF_1010 PF12631 MnmE helical domain AMF_1010 PF01926 50S ribosome-binding GTPase AMF_1011 PF04127 DNA / pantothenate metabolism flavoprotein AMF_1011 PF02441 Flavoprotein AMF_1012 PF00270 DEAD/DEAH box helicase AMF_1012 PF17191 RecG wedge domain AMF_1012 PF00271 Helicase conserved C-terminal domain AMF_1013 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family AMF_1014 PF13537 Glutamine amidotransferase domain AMF_1014 PF00156 Phosphoribosyl transferase domain AMF_1015 PF01195 Peptidyl-tRNA hydrolase AMF_1016 PF01386 Ribosomal L25p family AMF_1016 PF14693 Ribosomal protein TL5, C-terminal domain AMF_1020 PF00156 Phosphoribosyl transferase domain AMF_1021 PF07687 Peptidase dimerisation domain AMF_1021 PF01546 Peptidase family M20/M25/M40 AMF_1022 PF00999 Sodium/hydrogen exchanger family AMF_1022 PF02254 TrkA-N domain AMF_1025 PF02779 Transketolase, pyrimidine binding domain AMF_1025 PF02780 Transketolase, C-terminal domain AMF_1025 PF00364 Biotin-requiring enzyme AMF_1027 PF01523 Putative modulator of DNA gyrase AMF_1028 PF01926 50S ribosome-binding GTPase AMF_1028 PF06071 Protein of unknown function (DUF933) AMF_1029 PF02542 YgbB family AMF_103 PF02628 Cytochrome oxidase assembly protein AMF_1030 PF02542 YgbB family AMF_1030 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AMF_1033 PF01632 Ribosomal protein L35 AMF_1034 PF03966 Trm112p-like protein AMF_1036 PF00471 Ribosomal protein L33 AMF_104 PF02548 Ketopantoate hydroxymethyltransferase AMF_1047 PF01783 Ribosomal L32p protein family AMF_1048 PF00468 Ribosomal protein L34 AMF_105 PF00005 ABC transporter AMF_1057 PF00883 Cytosol aminopeptidase family, catalytic domain AMF_1057 PF02789 Cytosol aminopeptidase family, N-terminal domain AMF_106 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMF_109 PF00313 'Cold-shock' DNA-binding domain AMF_110 PF00989 PAS fold AMF_110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMF_110 PF00672 HAMP domain AMF_110 PF00512 His Kinase A (phospho-acceptor) domain AMF_112 PF12826 Helix-hairpin-helix motif AMF_112 PF00533 BRCA1 C Terminus (BRCT) domain AMF_112 PF03120 NAD-dependent DNA ligase OB-fold domain AMF_112 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AMF_112 PF01653 NAD-dependent DNA ligase adenylation domain AMF_113 PF00462 Glutaredoxin AMF_116 PF18073 Rubredoxin metal binding domain AMF_119 PF01250 Ribosomal protein S6 AMF_120 PF01084 Ribosomal protein S18 AMF_121 PF01281 Ribosomal protein L9, N-terminal domain AMF_121 PF03948 Ribosomal protein L9, C-terminal domain AMF_122 PF00464 Serine hydroxymethyltransferase AMF_125 PF00890 FAD binding domain AMF_125 PF02910 Fumarate reductase flavoprotein C-term AMF_126 PF13085 2Fe-2S iron-sulfur cluster binding domain AMF_127 PF02511 Thymidylate synthase complementing protein AMF_128 PF07690 Major Facilitator Superfamily AMF_129 PF05496 Holliday junction DNA helicase RuvB P-loop domain AMF_129 PF17864 RuvB AAA lid domain AMF_129 PF05491 RuvB C-terminal winged helix domain AMF_130 PF01330 RuvA N terminal domain AMF_130 PF07499 RuvA, C-terminal domain AMF_131 PF01578 Cytochrome C assembly protein AMF_132 PF00625 Guanylate kinase AMF_134 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AMF_134 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AMF_142 PF00034 Cytochrome c AMF_144 PF00361 Proton-conducting membrane transporter AMF_145 PF02896 PEP-utilising enzyme, TIM barrel domain AMF_145 PF00391 PEP-utilising enzyme, mobile domain AMF_145 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AMF_147 PF13419 Haloacid dehalogenase-like hydrolase AMF_148 PF01336 OB-fold nucleic acid binding domain AMF_148 PF02938 GAD domain AMF_148 PF00152 tRNA synthetases class II (D, K and N) AMF_149 PF04972 BON domain AMF_150 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AMF_150 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AMF_151 PF07478 D-ala D-ala ligase C-terminus AMF_151 PF01820 D-ala D-ala ligase N-terminus AMF_153 PF00158 Sigma-54 interaction domain AMF_153 PF00072 Response regulator receiver domain AMF_153 PF02954 Bacterial regulatory protein, Fis family AMF_156 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMF_156 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMF_163 PF00528 Binding-protein-dependent transport system inner membrane component AMF_164 PF01411 tRNA synthetases class II (A) AMF_164 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMF_167 PF00549 CoA-ligase AMF_167 PF02629 CoA binding domain AMF_168 PF08442 ATP-grasp domain AMF_168 PF00549 CoA-ligase AMF_169 PF01165 Ribosomal protein S21 AMF_172 PF03060 Nitronate monooxygenase AMF_173 PF01292 Prokaryotic cytochrome b561 AMF_174 PF00528 Binding-protein-dependent transport system inner membrane component AMF_175 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMF_175 PF00529 HlyD membrane-fusion protein of T1SS AMF_177 PF08245 Mur ligase middle domain AMF_178 PF04052 TolB amino-terminal domain AMF_178 PF07676 WD40-like Beta Propeller Repeat AMF_179 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AMF_179 PF17770 Ribonuclease J C-terminal domain AMF_179 PF12706 Beta-lactamase superfamily domain AMF_182 PF00164 Ribosomal protein S12/S23 AMF_183 PF00177 Ribosomal protein S7p/S5e AMF_185 PF03144 Elongation factor Tu domain 2 AMF_185 PF00009 Elongation factor Tu GTP binding domain AMF_185 PF03764 Elongation factor G, domain IV AMF_185 PF00679 Elongation factor G C-terminus AMF_185 PF14492 Elongation Factor G, domain II AMF_186 PF03143 Elongation factor Tu C-terminal domain AMF_186 PF03144 Elongation factor Tu domain 2 AMF_186 PF00009 Elongation factor Tu GTP binding domain AMF_188 PF00467 KOW motif AMF_188 PF02357 Transcription termination factor nusG AMF_190 PF03946 Ribosomal protein L11, N-terminal domain AMF_190 PF00298 Ribosomal protein L11, RNA binding domain AMF_191 PF00687 Ribosomal protein L1p/L10e family AMF_192 PF00466 Ribosomal protein L10 AMF_193 PF00542 Ribosomal protein L7/L12 C-terminal domain AMF_194 PF04565 RNA polymerase Rpb2, domain 3 AMF_194 PF04560 RNA polymerase Rpb2, domain 7 AMF_194 PF00562 RNA polymerase Rpb2, domain 6 AMF_194 PF10385 RNA polymerase beta subunit external 1 domain AMF_194 PF04563 RNA polymerase beta subunit AMF_194 PF04561 RNA polymerase Rpb2, domain 2 AMF_195 PF04998 RNA polymerase Rpb1, domain 5 AMF_195 PF05000 RNA polymerase Rpb1, domain 4 AMF_195 PF04983 RNA polymerase Rpb1, domain 3 AMF_195 PF00623 RNA polymerase Rpb1, domain 2 AMF_195 PF04997 RNA polymerase Rpb1, domain 1 AMF_196 PF01351 Ribonuclease HII AMF_199 PF00155 Aminotransferase class I and II AMF_201 PF03309 Type III pantothenate kinase AMF_203 PF01180 Dihydroorotate dehydrogenase AMF_204 PF01327 Polypeptide deformylase AMF_205 PF02230 Phospholipase/Carboxylesterase AMF_207 PF01243 Pyridoxamine 5'-phosphate oxidase AMF_207 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AMF_208 PF02875 Mur ligase family, glutamate ligase domain AMF_208 PF08245 Mur ligase middle domain AMF_210 PF01053 Cys/Met metabolism PLP-dependent enzyme AMF_213 PF07733 Bacterial DNA polymerase III alpha NTPase domain AMF_213 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AMF_213 PF02811 PHP domain AMF_213 PF14579 Helix-hairpin-helix motif AMF_214 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMF_215 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AMF_217 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AMF_219 PF02581 Thiamine monophosphate synthase AMF_219 PF08543 Phosphomethylpyrimidine kinase AMF_221 PF01594 AI-2E family transporter AMF_223 PF01479 S4 domain AMF_223 PF00163 Ribosomal protein S4/S9 N-terminal domain AMF_229 PF05697 Bacterial trigger factor protein (TF) AMF_229 PF05698 Bacterial trigger factor protein (TF) C-terminus AMF_229 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMF_230 PF00574 Clp protease AMF_231 PF06689 ClpX C4-type zinc finger AMF_231 PF10431 C-terminal, D2-small domain, of ClpB protein AMF_231 PF07724 AAA domain (Cdc48 subfamily) AMF_232 PF00004 ATPase family associated with various cellular activities (AAA) AMF_232 PF05362 Lon protease (S16) C-terminal proteolytic domain AMF_232 PF02190 ATP-dependent protease La (LON) substrate-binding domain AMF_233 PF00551 Formyl transferase AMF_233 PF02911 Formyl transferase, C-terminal domain AMF_235 PF03618 Kinase/pyrophosphorylase AMF_236 PF02581 Thiamine monophosphate synthase AMF_237 PF00571 CBS domain AMF_237 PF03471 Transporter associated domain AMF_237 PF01595 Cyclin M transmembrane N-terminal domain AMF_240 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AMF_240 PF01580 FtsK/SpoIIIE family AMF_240 PF09397 Ftsk gamma domain AMF_240 PF17854 FtsK alpha domain AMF_243 PF00202 Aminotransferase class-III AMF_244 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMF_244 PF00989 PAS fold AMF_244 PF00512 His Kinase A (phospho-acceptor) domain AMF_246 PF02472 Biopolymer transport protein ExbD/TolR AMF_247 PF01618 MotA/TolQ/ExbB proton channel family AMF_248 PF08676 MutL C terminal dimerisation domain AMF_248 PF01119 DNA mismatch repair protein, C-terminal domain AMF_249 PF17782 DprA winged helix domain AMF_249 PF02481 DNA recombination-mediator protein A AMF_252 PF02801 Beta-ketoacyl synthase, C-terminal domain AMF_252 PF00109 Beta-ketoacyl synthase, N-terminal domain AMF_253 PF00550 Phosphopantetheine attachment site AMF_256 PF02600 Disulfide bond formation protein DsbB AMF_271 PF00580 UvrD/REP helicase N-terminal domain AMF_271 PF13361 UvrD-like helicase C-terminal domain AMF_273 PF03989 DNA gyrase C-terminal domain, beta-propeller AMF_273 PF00521 DNA gyrase/topoisomerase IV, subunit A AMF_274 PF00730 HhH-GPD superfamily base excision DNA repair protein AMF_274 PF00633 Helix-hairpin-helix motif AMF_274 PF10576 Iron-sulfur binding domain of endonuclease III AMF_276 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMF_276 PF00183 Hsp90 protein AMF_279 PF10397 Adenylosuccinate lyase C-terminus AMF_279 PF00206 Lyase AMF_280 PF08459 UvrC Helix-hairpin-helix N-terminal AMF_280 PF01541 GIY-YIG catalytic domain AMF_280 PF02151 UvrB/uvrC motif AMF_282 PF03099 Biotin/lipoate A/B protein ligase family AMF_282 PF02237 Biotin protein ligase C terminal domain AMF_285 PF12857 TOBE-like domain AMF_285 PF00005 ABC transporter AMF_286 PF02132 RecR protein AMF_286 PF13662 Toprim domain AMF_287 PF01297 Zinc-uptake complex component A periplasmic AMF_288 PF00005 ABC transporter AMF_289 PF03109 ABC1 family AMF_291 PF00919 Uncharacterized protein family UPF0004 AMF_291 PF04055 Radical SAM superfamily AMF_295 PF16078 2-oxoglutarate dehydrogenase N-terminus AMF_295 PF00676 Dehydrogenase E1 component AMF_295 PF02779 Transketolase, pyrimidine binding domain AMF_295 PF16870 2-oxoglutarate dehydrogenase C-terminal AMF_297 PF00701 Dihydrodipicolinate synthetase family AMF_299 PF01230 HIT domain AMF_301 PF00488 MutS domain V AMF_301 PF01624 MutS domain I AMF_301 PF05188 MutS domain II AMF_301 PF05192 MutS domain III AMF_301 PF05190 MutS family domain IV AMF_303 PF07690 Major Facilitator Superfamily AMF_304 PF00083 Sugar (and other) transporter AMF_304 PF07690 Major Facilitator Superfamily AMF_305 PF02540 NAD synthase AMF_305 PF00795 Carbon-nitrogen hydrolase AMF_306 PF00490 Delta-aminolevulinic acid dehydratase AMF_307 PF00905 Penicillin binding protein transpeptidase domain AMF_307 PF03717 Penicillin-binding Protein dimerisation domain AMF_309 PF07690 Major Facilitator Superfamily AMF_310 PF00436 Single-strand binding protein family AMF_312 PF02637 GatB domain AMF_312 PF02934 GatB/GatE catalytic domain AMF_314 PF08299 Bacterial dnaA protein helix-turn-helix AMF_314 PF00308 Bacterial dnaA protein AMF_314 PF11638 DnaA N-terminal domain AMF_316 PF01467 Cytidylyltransferase-like AMF_318 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AMF_319 PF12170 DNA polymerase III tau subunit V interacting with alpha AMF_319 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AMF_319 PF12169 DNA polymerase III subunits gamma and tau domain III AMF_320 PF03481 Putative GTP-binding controlling metal-binding AMF_320 PF01300 Telomere recombination AMF_321 PF01121 Dephospho-CoA kinase AMF_322 PF13667 ThiC-associated domain AMF_322 PF01964 Radical SAM ThiC family AMF_324 PF01192 RNA polymerase Rpb6 AMF_327 PF09334 tRNA synthetases class I (M) AMF_327 PF13603 Leucyl-tRNA synthetase, Domain 2 AMF_327 PF08264 Anticodon-binding domain of tRNA AMF_327 PF00133 tRNA synthetases class I (I, L, M and V) AMF_328 PF01026 TatD related DNase AMF_329 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AMF_330 PF03100 CcmE AMF_331 PF01975 Survival protein SurE AMF_332 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AMF_333 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AMF_334 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AMF_335 PF17755 UvrA DNA-binding domain AMF_335 PF17760 UvrA interaction domain AMF_337 PF00885 6,7-dimethyl-8-ribityllumazine synthase AMF_339 PF02096 60Kd inner membrane protein AMF_339 PF14849 YidC periplasmic domain AMF_340 PF01066 CDP-alcohol phosphatidyltransferase AMF_341 PF02666 Phosphatidylserine decarboxylase AMF_342 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMF_344 PF03033 Glycosyltransferase family 28 N-terminal domain AMF_344 PF04101 Glycosyltransferase family 28 C-terminal domain AMF_345 PF08207 Elongation factor P (EF-P) KOW-like domain AMF_345 PF09285 Elongation factor P, C-terminal AMF_345 PF01132 Elongation factor P (EF-P) OB domain AMF_347 PF00849 RNA pseudouridylate synthase AMF_347 PF01479 S4 domain AMF_349 PF00990 Diguanylate cyclase, GGDEF domain AMF_349 PF00072 Response regulator receiver domain AMF_352 PF05088 Bacterial NAD-glutamate dehydrogenase AMF_353 PF06055 Exopolysaccharide synthesis, ExoD AMF_354 PF01406 tRNA synthetases class I (C) catalytic domain AMF_354 PF09190 DALR domain AMF_355 PF00268 Ribonucleotide reductase, small chain AMF_361 PF08275 DNA primase catalytic core, N-terminal domain AMF_361 PF01807 CHC2 zinc finger AMF_361 PF13662 Toprim domain AMF_363 PF04539 Sigma-70 region 3 AMF_363 PF04545 Sigma-70, region 4 AMF_363 PF04542 Sigma-70 region 2 AMF_363 PF00140 Sigma-70 factor, region 1.2 AMF_363 PF03979 Sigma-70 factor, region 1.1 AMF_363 PF04546 Sigma-70, non-essential region AMF_365 PF01207 Dihydrouridine synthase (Dus) AMF_366 PF08544 GHMP kinases C terminal AMF_366 PF00288 GHMP kinases N terminal domain AMF_369 PF00512 His Kinase A (phospho-acceptor) domain AMF_369 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMF_369 PF13188 PAS domain AMF_369 PF00072 Response regulator receiver domain AMF_369 PF08448 PAS fold AMF_372 PF03853 YjeF-related protein N-terminus AMF_372 PF01256 Carbohydrate kinase AMF_373 PF01751 Toprim domain AMF_373 PF13368 Topoisomerase C-terminal repeat AMF_373 PF01396 Topoisomerase DNA binding C4 zinc finger AMF_373 PF01131 DNA topoisomerase AMF_375 PF01648 4'-phosphopantetheinyl transferase superfamily AMF_377 PF03129 Anticodon binding domain AMF_377 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMF_379 PF01467 Cytidylyltransferase-like AMF_380 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMF_381 PF00578 AhpC/TSA family AMF_381 PF10417 C-terminal domain of 1-Cys peroxiredoxin AMF_383 PF13145 PPIC-type PPIASE domain AMF_389 PF16198 tRNA pseudouridylate synthase B C-terminal domain AMF_389 PF01509 TruB family pseudouridylate synthase (N terminal domain) AMF_390 PF00312 Ribosomal protein S15 AMF_391 PF00013 KH domain AMF_391 PF01138 3' exoribonuclease family, domain 1 AMF_391 PF03725 3' exoribonuclease family, domain 2 AMF_391 PF00575 S1 RNA binding domain AMF_393 PF00009 Elongation factor Tu GTP binding domain AMF_393 PF03144 Elongation factor Tu domain 2 AMF_393 PF06421 GTP-binding protein LepA C-terminus AMF_393 PF00679 Elongation factor G C-terminus AMF_409 PF00586 AIR synthase related protein, N-terminal domain AMF_409 PF02769 AIR synthase related protein, C-terminal domain AMF_413 PF00202 Aminotransferase class-III AMF_415 PF00398 Ribosomal RNA adenine dimethylase AMF_416 PF00121 Triosephosphate isomerase AMF_417 PF16868 NMT1-like family AMF_418 PF00814 Glycoprotease family AMF_420 PF02152 Dihydroneopterin aldolase AMF_421 PF00056 lactate/malate dehydrogenase, NAD binding domain AMF_421 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AMF_423 PF00009 Elongation factor Tu GTP binding domain AMF_423 PF11987 Translation-initiation factor 2 AMF_425 PF02502 Ribose/Galactose Isomerase AMF_426 PF08241 Methyltransferase domain AMF_427 PF00814 Glycoprotease family AMF_435 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AMF_435 PF14850 DNA-binding domain of Proline dehydrogenase AMF_435 PF01619 Proline dehydrogenase AMF_435 PF00171 Aldehyde dehydrogenase family AMF_438 PF00171 Aldehyde dehydrogenase family AMF_438 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AMF_438 PF01619 Proline dehydrogenase AMF_438 PF14850 DNA-binding domain of Proline dehydrogenase AMF_440 PF03330 Lytic transglycolase AMF_441 PF03372 Endonuclease/Exonuclease/phosphatase family AMF_443 PF00444 Ribosomal protein L36 AMF_446 PF01016 Ribosomal L27 protein AMF_447 PF00829 Ribosomal prokaryotic L21 protein AMF_448 PF03952 Enolase, N-terminal domain AMF_448 PF00113 Enolase, C-terminal TIM barrel domain AMF_449 PF01926 50S ribosome-binding GTPase AMF_449 PF01018 GTP1/OBG AMF_450 PF00709 Adenylosuccinate synthetase AMF_452 PF01795 MraW methylase family AMF_453 PF01812 5-formyltetrahydrofolate cyclo-ligase family AMF_461 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMF_462 PF01523 Putative modulator of DNA gyrase AMF_463 PF01227 GTP cyclohydrolase I AMF_464 PF00231 ATP synthase AMF_465 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AMF_467 PF00929 Exonuclease AMF_468 PF13335 Magnesium chelatase, subunit ChlI C-terminal AMF_468 PF01078 Magnesium chelatase, subunit ChlI AMF_473 PF00140 Sigma-70 factor, region 1.2 AMF_473 PF04545 Sigma-70, region 4 AMF_473 PF04542 Sigma-70 region 2 AMF_477 PF00146 NADH dehydrogenase AMF_478 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal AMF_478 PF00384 Molybdopterin oxidoreductase AMF_478 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMF_480 PF01751 Toprim domain AMF_480 PF00986 DNA gyrase B subunit, carboxyl terminus AMF_480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMF_480 PF00204 DNA gyrase B AMF_481 PF02441 Flavoprotein AMF_482 PF03918 Cytochrome C biogenesis protein AMF_484 PF00111 2Fe-2S iron-sulfur cluster binding domain AMF_485 PF00012 Hsp70 protein AMF_486 PF00226 DnaJ domain AMF_486 PF07743 HSCB C-terminal oligomerisation domain AMF_487 PF01521 Iron-sulphur cluster biosynthesis AMF_488 PF01592 NifU-like N terminal domain AMF_489 PF00266 Aminotransferase class-V AMF_491 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AMF_492 PF01921 tRNA synthetases class I (K) AMF_494 PF01416 tRNA pseudouridine synthase AMF_495 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMF_495 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMF_498 PF00923 Transaldolase/Fructose-6-phosphate aldolase AMF_499 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AMF_500 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMF_500 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMF_502 PF01728 FtsJ-like methyltransferase AMF_510 PF00750 tRNA synthetases class I (R) AMF_510 PF03485 Arginyl tRNA synthetase N terminal domain AMF_510 PF05746 DALR anticodon binding domain AMF_511 PF11967 Recombination protein O N terminal AMF_511 PF02565 Recombination protein O C terminal AMF_514 PF08264 Anticodon-binding domain of tRNA AMF_514 PF00133 tRNA synthetases class I (I, L, M and V) AMF_515 PF00578 AhpC/TSA family AMF_516 PF04452 RNA methyltransferase AMF_519 PF00472 RF-1 domain AMF_519 PF03462 PCRF domain AMF_520 PF01709 Transcriptional regulator AMF_521 PF01425 Amidase AMF_522 PF02875 Mur ligase family, glutamate ligase domain AMF_522 PF08245 Mur ligase middle domain AMF_523 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AMF_523 PF03900 Porphobilinogen deaminase, C-terminal domain AMF_524 PF01565 FAD binding domain AMF_524 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AMF_527 PF12838 4Fe-4S dicluster domain AMF_528 PF10502 Signal peptidase, peptidase S26 AMF_529 PF01521 Iron-sulphur cluster biosynthesis AMF_538 PF00004 ATPase family associated with various cellular activities (AAA) AMF_538 PF07724 AAA domain (Cdc48 subfamily) AMF_538 PF17871 AAA lid domain AMF_538 PF02861 Clp amino terminal domain, pathogenicity island component AMF_538 PF10431 C-terminal, D2-small domain, of ClpB protein AMF_540 PF03741 Integral membrane protein TerC family AMF_541 PF02033 Ribosome-binding factor A AMF_542 PF00009 Elongation factor Tu GTP binding domain AMF_542 PF11987 Translation-initiation factor 2 AMF_543 PF00575 S1 RNA binding domain AMF_543 PF08529 NusA N-terminal domain AMF_543 PF13184 NusA-like KH domain AMF_544 PF00873 AcrB/AcrD/AcrF family AMF_545 PF00902 Sec-independent protein translocase protein (TatC) AMF_546 PF04551 GcpE protein AMF_548 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AMF_548 PF13288 DXP reductoisomerase C-terminal domain AMF_548 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AMF_549 PF00361 Proton-conducting membrane transporter AMF_550 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus AMF_550 PF00361 Proton-conducting membrane transporter AMF_551 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AMF_551 PF00361 Proton-conducting membrane transporter AMF_552 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AMF_553 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AMF_555 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AMF_555 PF10531 SLBB domain AMF_555 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMF_561 PF02646 RmuC family AMF_562 PF02403 Seryl-tRNA synthetase N-terminal domain AMF_562 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMF_564 PF01218 Coproporphyrinogen III oxidase AMF_565 PF00696 Amino acid kinase family AMF_566 PF01926 50S ribosome-binding GTPase AMF_568 PF00472 RF-1 domain AMF_568 PF03462 PCRF domain AMF_569 PF01039 Carboxyl transferase domain AMF_570 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMF_570 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AMF_570 PF06827 Zinc finger found in FPG and IleRS AMF_572 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMF_578 PF02167 Cytochrome C1 family AMF_580 PF00033 Cytochrome b/b6/petB AMF_580 PF00032 Cytochrome b(C-terminal)/b6/petD AMF_581 PF00355 Rieske [2Fe-2S] domain AMF_581 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AMF_582 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AMF_582 PF00355 Rieske [2Fe-2S] domain AMF_584 PF00950 ABC 3 transport family AMF_586 PF00889 Elongation factor TS AMF_587 PF00318 Ribosomal protein S2 AMF_588 PF02545 Maf-like protein AMF_589 PF01176 Translation initiation factor 1A / IF-1 AMF_591 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMF_591 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMF_592 PF13360 PQQ-like domain AMF_593 PF01926 50S ribosome-binding GTPase AMF_593 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AMF_594 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AMF_594 PF01676 Metalloenzyme superfamily AMF_595 PF00117 Glutamine amidotransferase class-I AMF_595 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AMF_597 PF02401 LytB protein AMF_598 PF00692 dUTPase AMF_599 PF01225 Mur ligase family, catalytic domain AMF_599 PF02875 Mur ligase family, glutamate ligase domain AMF_599 PF08245 Mur ligase middle domain AMF_603 PF04610 TrbL/VirB6 plasmid conjugal transfer protein AMF_604 PF04610 TrbL/VirB6 plasmid conjugal transfer protein AMF_606 PF03135 CagE, TrbE, VirB family, component of type IV transporter system AMF_608 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AMF_608 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AMF_609 PF00528 Binding-protein-dependent transport system inner membrane component AMF_610 PF04055 Radical SAM superfamily AMF_614 PF00289 Biotin carboxylase, N-terminal domain AMF_614 PF02785 Biotin carboxylase C-terminal domain AMF_614 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMF_616 PF00849 RNA pseudouridylate synthase AMF_617 PF00830 Ribosomal L28 family AMF_618 PF17764 3′ DNA-binding domain (3′BD) AMF_618 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AMF_618 PF00270 DEAD/DEAH box helicase AMF_618 PF18074 Primosomal protein N C-terminal domain AMF_618 PF00271 Helicase conserved C-terminal domain AMF_625 PF07650 KH domain AMF_625 PF01926 50S ribosome-binding GTPase AMF_626 PF02978 Signal peptide binding domain AMF_626 PF00448 SRP54-type protein, GTPase domain AMF_626 PF02881 SRP54-type protein, helical bundle domain AMF_629 PF03364 Polyketide cyclase / dehydrase and lipid transport AMF_630 PF00012 Hsp70 protein AMF_631 PF12111 Polyribonucleotide phosphorylase C terminal AMF_631 PF10150 Ribonuclease E/G family AMF_631 PF00575 S1 RNA binding domain AMF_638 PF00456 Transketolase, thiamine diphosphate binding domain AMF_638 PF02780 Transketolase, C-terminal domain AMF_638 PF02779 Transketolase, pyrimidine binding domain AMF_640 PF00691 OmpA family AMF_641 PF00709 Adenylosuccinate synthetase AMF_642 PF01926 50S ribosome-binding GTPase AMF_642 PF01018 GTP1/OBG AMF_643 PF03652 Holliday junction resolvase AMF_644 PF00317 Ribonucleotide reductase, all-alpha domain AMF_644 PF02867 Ribonucleotide reductase, barrel domain AMF_644 PF03477 ATP cone domain AMF_645 PF00348 Polyprenyl synthetase AMF_647 PF01266 FAD dependent oxidoreductase AMF_648 PF03796 DnaB-like helicase C terminal domain AMF_648 PF00772 DnaB-like helicase N terminal domain AMF_650 PF14437 MafB19-like deaminase AMF_651 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMF_651 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMF_652 PF02504 Fatty acid synthesis protein AMF_654 PF01702 Queuine tRNA-ribosyltransferase AMF_655 PF00005 ABC transporter AMF_656 PF05173 Dihydrodipicolinate reductase, C-terminus AMF_656 PF01113 Dihydrodipicolinate reductase, N-terminus AMF_657 PF01613 Flavin reductase like domain AMF_658 PF01040 UbiA prenyltransferase family AMF_665 PF00825 Ribonuclease P AMF_670 PF03484 tRNA synthetase B5 domain AMF_670 PF03147 Ferredoxin-fold anticodon binding domain AMF_670 PF01588 Putative tRNA binding domain AMF_670 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AMF_670 PF03483 B3/4 domain AMF_671 PF01196 Ribosomal protein L17 AMF_672 PF01000 RNA polymerase Rpb3/RpoA insert domain AMF_672 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AMF_672 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AMF_673 PF00411 Ribosomal protein S11 AMF_675 PF00416 Ribosomal protein S13/S18 AMF_677 PF00344 SecY translocase AMF_678 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AMF_679 PF00333 Ribosomal protein S5, N-terminal domain AMF_679 PF03719 Ribosomal protein S5, C-terminal domain AMF_680 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AMF_681 PF00347 Ribosomal protein L6 AMF_682 PF00410 Ribosomal protein S8 AMF_683 PF00253 Ribosomal protein S14p/S29e AMF_684 PF00673 ribosomal L5P family C-terminus AMF_684 PF00281 Ribosomal protein L5 AMF_685 PF00467 KOW motif AMF_685 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AMF_686 PF00238 Ribosomal protein L14p/L23e AMF_687 PF00366 Ribosomal protein S17 AMF_688 PF00831 Ribosomal L29 protein AMF_689 PF00252 Ribosomal protein L16p/L10e AMF_690 PF07650 KH domain AMF_690 PF00189 Ribosomal protein S3, C-terminal domain AMF_691 PF00237 Ribosomal protein L22p/L17e AMF_692 PF00203 Ribosomal protein S19 AMF_693 PF00181 Ribosomal Proteins L2, RNA binding domain AMF_693 PF03947 Ribosomal Proteins L2, C-terminal domain AMF_694 PF00276 Ribosomal protein L23 AMF_695 PF00573 Ribosomal protein L4/L1 family AMF_696 PF00297 Ribosomal protein L3 AMF_697 PF00338 Ribosomal protein S10p/S20e AMF_698 PF00009 Elongation factor Tu GTP binding domain AMF_698 PF03144 Elongation factor Tu domain 2 AMF_698 PF03143 Elongation factor Tu C-terminal domain AMF_699 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMF_699 PF00588 SpoU rRNA Methylase family AMF_700 PF02224 Cytidylate kinase AMF_701 PF00575 S1 RNA binding domain AMF_702 PF01343 Peptidase family S49 AMF_706 PF00762 Ferrochelatase AMF_707 PF03969 AFG1-like ATPase AMF_711 PF13361 UvrD-like helicase C-terminal domain AMF_711 PF00580 UvrD/REP helicase N-terminal domain AMF_711 PF12705 PD-(D/E)XK nuclease superfamily AMF_712 PF00107 Zinc-binding dehydrogenase AMF_713 PF00005 ABC transporter AMF_713 PF00664 ABC transporter transmembrane region AMF_714 PF00809 Pterin binding enzyme AMF_716 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMF_716 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AMF_716 PF02142 MGS-like domain AMF_718 PF00206 Lyase AMF_718 PF10415 Fumarase C C-terminus AMF_719 PF04127 DNA / pantothenate metabolism flavoprotein AMF_719 PF02441 Flavoprotein AMF_720 PF01979 Amidohydrolase family AMF_721 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMF_721 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMF_721 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMF_721 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMF_722 PF03099 Biotin/lipoate A/B protein ligase family AMF_723 PF04002 RadC-like JAB domain AMF_724 PF00166 Chaperonin 10 Kd subunit AMF_725 PF00118 TCP-1/cpn60 chaperonin family AMF_728 PF17871 AAA lid domain AMF_728 PF00004 ATPase family associated with various cellular activities (AAA) AMF_728 PF10431 C-terminal, D2-small domain, of ClpB protein AMF_728 PF02861 Clp amino terminal domain, pathogenicity island component AMF_728 PF07724 AAA domain (Cdc48 subfamily) AMF_731 PF00775 Dioxygenase AMF_733 PF00551 Formyl transferase AMF_737 PF01134 Glucose inhibited division protein A AMF_737 PF13932 GidA associated domain AMF_738 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AMF_739 PF01476 LysM domain AMF_739 PF01551 Peptidase family M23 AMF_742 PF04055 Radical SAM superfamily AMF_742 PF06968 Biotin and Thiamin Synthesis associated domain AMF_743 PF00586 AIR synthase related protein, N-terminal domain AMF_743 PF02769 AIR synthase related protein, C-terminal domain AMF_743 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AMF_744 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AMF_744 PF00809 Pterin binding enzyme AMF_747 PF01435 Peptidase family M48 AMF_751 PF02769 AIR synthase related protein, C-terminal domain AMF_751 PF00586 AIR synthase related protein, N-terminal domain AMF_752 PF02899 Phage integrase, N-terminal SAM-like domain AMF_752 PF00589 Phage integrase family AMF_753 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AMF_753 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AMF_758 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMF_758 PF07498 Rho termination factor, N-terminal domain AMF_758 PF07497 Rho termination factor, RNA-binding domain AMF_759 PF00227 Proteasome subunit AMF_760 PF10431 C-terminal, D2-small domain, of ClpB protein AMF_760 PF07724 AAA domain (Cdc48 subfamily) AMF_760 PF00004 ATPase family associated with various cellular activities (AAA) AMF_761 PF01209 ubiE/COQ5 methyltransferase family AMF_762 PF09334 tRNA synthetases class I (M) AMF_762 PF08264 Anticodon-binding domain of tRNA AMF_764 PF13840 ACT domain AMF_764 PF00696 Amino acid kinase family AMF_766 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AMF_766 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AMF_767 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMF_768 PF01040 UbiA prenyltransferase family AMF_769 PF13525 Outer membrane lipoprotein AMF_770 PF02844 Phosphoribosylglycinamide synthetase, N domain AMF_770 PF02843 Phosphoribosylglycinamide synthetase, C domain AMF_770 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AMF_771 PF02699 Preprotein translocase subunit AMF_772 PF01380 SIS domain AMF_773 PF02767 DNA polymerase III beta subunit, central domain AMF_773 PF02768 DNA polymerase III beta subunit, C-terminal domain AMF_773 PF00712 DNA polymerase III beta subunit, N-terminal domain AMF_775 PF00072 Response regulator receiver domain AMF_775 PF00486 Transcriptional regulatory protein, C terminal AMF_777 PF00719 Inorganic pyrophosphatase AMF_778 PF00380 Ribosomal protein S9/S16 AMF_779 PF00572 Ribosomal protein L13 AMF_780 PF02321 Outer membrane efflux protein AMF_782 PF10609 NUBPL iron-transfer P-loop NTPase AMF_784 PF14572 Phosphoribosyl synthetase-associated domain AMF_784 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AMF_785 PF02686 Glu-tRNAGln amidotransferase C subunit AMF_786 PF00330 Aconitase family (aconitate hydratase) AMF_786 PF00694 Aconitase C-terminal domain AMF_787 PF04379 ApaG domain AMF_788 PF02222 ATP-grasp domain AMF_788 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AMF_803 PF12221 Bacterial membrane protein N terminal AMF_803 PF01145 SPFH domain / Band 7 family AMF_804 PF01145 SPFH domain / Band 7 family AMF_805 PF13180 PDZ domain AMF_807 PF14622 Ribonuclease-III-like AMF_807 PF00035 Double-stranded RNA binding motif AMF_808 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 AMF_815 PF00675 Insulinase (Peptidase family M16) AMF_815 PF05193 Peptidase M16 inactive domain AMF_816 PF01252 Signal peptidase (SPase) II AMF_817 PF01687 Riboflavin kinase AMF_817 PF06574 FAD synthetase AMF_818 PF00462 Glutaredoxin AMF_819 PF05175 Methyltransferase small domain AMF_819 PF17827 PrmC N-terminal domain AMF_820 PF00557 Metallopeptidase family M24 AMF_821 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMF_821 PF00364 Biotin-requiring enzyme AMF_821 PF02817 e3 binding domain AMF_822 PF00132 Bacterial transferase hexapeptide (six repeats) AMF_823 PF02569 Pantoate-beta-alanine ligase AMF_824 PF00768 D-alanyl-D-alanine carboxypeptidase AMF_824 PF07943 Penicillin-binding protein 5, C-terminal domain AMF_827 PF17820 PDZ domain AMF_827 PF02163 Peptidase family M50 AMF_828 PF01103 Surface antigen AMF_828 PF07244 Surface antigen variable number repeat AMF_830 PF07977 FabA-like domain AMF_831 PF01808 AICARFT/IMPCHase bienzyme AMF_831 PF02142 MGS-like domain AMF_832 PF01066 CDP-alcohol phosphatidyltransferase AMF_834 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMF_835 PF01464 Transglycosylase SLT domain AMF_836 PF02104 SURF1 family AMF_838 PF13685 Iron-containing alcohol dehydrogenase AMF_839 PF00119 ATP synthase A chain AMF_841 PF00137 ATP synthase subunit C AMF_844 PF02491 SHS2 domain inserted in FTSA AMF_845 PF02386 Cation transport protein AMF_846 PF01171 PP-loop family AMF_847 PF06480 FtsH Extracellular AMF_847 PF17862 AAA+ lid domain AMF_847 PF00004 ATPase family associated with various cellular activities (AAA) AMF_847 PF01434 Peptidase family M41 AMF_848 PF07517 SecA DEAD-like domain AMF_848 PF01043 SecA preprotein cross-linking domain AMF_848 PF07516 SecA Wing and Scaffold domain AMF_848 PF02810 SEC-C motif AMF_850 PF01545 Cation efflux family AMF_852 PF01258 Prokaryotic dksA/traR C4-type zinc finger AMF_854 PF00448 SRP54-type protein, GTPase domain AMF_854 PF02881 SRP54-type protein, helical bundle domain AMF_855 PF00180 Isocitrate/isopropylmalate dehydrogenase AMF_855 PF18324 Hypothetical protein TT1725 AMF_856 PF17768 RecJ OB domain AMF_856 PF02272 DHHA1 domain AMF_856 PF01368 DHH family AMF_856 PF10141 Single-strand DNA-specific exonuclease, C terminal domain AMF_858 PF01743 Poly A polymerase head domain AMF_858 PF12627 Probable RNA and SrmB- binding site of polymerase A AMF_858 PF13735 tRNA nucleotidyltransferase domain 2 putative AMF_859 PF00334 Nucleoside diphosphate kinase AMF_860 PF01381 Helix-turn-helix AMF_866 PF01617 Surface antigen AMF_882 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AMF_882 PF01578 Cytochrome C assembly protein AMF_883 PF08264 Anticodon-binding domain of tRNA AMF_883 PF00133 tRNA synthetases class I (I, L, M and V) AMF_884 PF01668 SmpB protein AMF_885 PF00925 GTP cyclohydrolase II AMF_885 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AMF_886 PF01272 Transcription elongation factor, GreA/GreB, C-term AMF_886 PF03449 Transcription elongation factor, N-terminal AMF_887 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMF_887 PF00306 ATP synthase alpha/beta chain, C terminal domain AMF_887 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMF_888 PF00213 ATP synthase delta (OSCP) subunit AMF_893 PF02687 FtsX-like permease family AMF_893 PF12704 MacB-like periplasmic core domain AMF_896 PF00285 Citrate synthase, C-terminal domain AMF_897 PF00117 Glutamine amidotransferase class-I AMF_897 PF00958 GMP synthase C terminal domain AMF_900 PF00364 Biotin-requiring enzyme AMF_900 PF02817 e3 binding domain AMF_900 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMF_901 PF01791 DeoC/LacD family aldolase AMF_902 PF03717 Penicillin-binding Protein dimerisation domain AMF_902 PF00905 Penicillin binding protein transpeptidase domain AMF_903 PF02355 Protein export membrane protein AMF_903 PF07549 SecD/SecF GG Motif AMF_904 PF02021 Uncharacterised protein family UPF0102 AMF_905 PF00155 Aminotransferase class I and II AMF_906 PF00579 tRNA synthetases class I (W and Y) AMF_907 PF00120 Glutamine synthetase, catalytic domain AMF_907 PF03951 Glutamine synthetase, beta-Grasp domain AMF_908 PF00953 Glycosyl transferase family 4 AMF_908 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AMF_909 PF00348 Polyprenyl synthetase AMF_911 PF00005 ABC transporter AMF_912 PF02405 Permease MlaE AMF_913 PF00834 Ribulose-phosphate 3 epimerase family AMF_914 PF00476 DNA polymerase family A AMF_914 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AMF_914 PF01367 5'-3' exonuclease, C-terminal SAM fold AMF_916 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMF_916 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMF_917 PF02463 RecF/RecN/SMC N terminal domain AMF_929 PF03023 Lipid II flippase MurJ AMF_930 PF01790 Prolipoprotein diacylglyceryl transferase AMF_931 PF01649 Ribosomal protein S20 AMF_933 PF01327 Polypeptide deformylase AMF_934 PF03167 Uracil DNA glycosylase superfamily AMF_941 PF17757 UvrB interaction domain AMF_941 PF02151 UvrB/uvrC motif AMF_941 PF04851 Type III restriction enzyme, res subunit AMF_941 PF12344 Ultra-violet resistance protein B AMF_941 PF00271 Helicase conserved C-terminal domain AMF_942 PF02355 Protein export membrane protein AMF_948 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AMF_952 PF12327 FtsZ family, C-terminal domain AMF_952 PF00091 Tubulin/FtsZ family, GTPase domain AMF_953 PF02130 Uncharacterized protein family UPF0054 AMF_954 PF13614 AAA domain AMF_955 PF17762 HTH domain found in ParB protein AMF_955 PF02195 ParB-like nuclease domain AMF_957 PF05239 PRC-barrel domain AMF_957 PF01782 RimM N-terminal domain AMF_958 PF01746 tRNA (Guanine-1)-methyltransferase AMF_959 PF01245 Ribosomal protein L19 AMF_960 PF00994 Probable molybdopterin binding domain AMF_960 PF18146 Damage-inducible protein CinA KH domain AMF_960 PF02464 Competence-damaged protein AMF_961 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMF_961 PF03129 Anticodon binding domain AMF_961 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMF_962 PF00707 Translation initiation factor IF-3, C-terminal domain AMF_962 PF05198 Translation initiation factor IF-3, N-terminal domain AMF_963 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AMF_964 PF01027 Inhibitor of apoptosis-promoting Bax1 AMF_965 PF02774 Semialdehyde dehydrogenase, dimerisation domain AMF_965 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMF_966 PF02575 YbaB/EbfC DNA-binding family AMF_967 PF12170 DNA polymerase III tau subunit V interacting with alpha AMF_967 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AMF_967 PF12169 DNA polymerase III subunits gamma and tau domain III AMF_968 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMF_968 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AMF_972 PF01098 Cell cycle protein AMF_973 PF00438 S-adenosylmethionine synthetase, N-terminal domain AMF_973 PF02772 S-adenosylmethionine synthetase, central domain AMF_973 PF02773 S-adenosylmethionine synthetase, C-terminal domain AMF_974 PF01494 FAD binding domain AMF_976 PF02091 Glycyl-tRNA synthetase alpha subunit AMF_977 PF05746 DALR anticodon binding domain AMF_977 PF02092 Glycyl-tRNA synthetase beta subunit AMF_978 PF00684 DnaJ central domain AMF_978 PF00226 DnaJ domain AMF_978 PF01556 DnaJ C terminal domain AMF_979 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AMF_979 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AMF_980 PF02660 Glycerol-3-phosphate acyltransferase AMF_981 PF02075 Crossover junction endodeoxyribonuclease RuvC AMF_982 PF00510 Cytochrome c oxidase subunit III AMF_983 PF01208 Uroporphyrinogen decarboxylase (URO-D) AMF_984 PF03471 Transporter associated domain AMF_984 PF00571 CBS domain AMF_986 PF04860 Phage portal protein AMF_988 PF02445 Quinolinate synthetase A protein AMF_989 PF00037 4Fe-4S binding domain AMF_989 PF11953 Domain of unknown function (DUF3470) AMF_990 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AMF_990 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AMF_991 PF00707 Translation initiation factor IF-3, C-terminal domain AMF_991 PF05198 Translation initiation factor IF-3, N-terminal domain AMF_992 PF02534 Type IV secretory system Conjugative DNA transfer AMF_993 PF00437 Type II/IV secretion system protein AMF_994 PF03743 Bacterial conjugation TrbI-like protein AMF_997 PF00925 GTP cyclohydrolase II AMF_998 PF01209 ubiE/COQ5 methyltransferase family